BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] (245 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] Length = 245 Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust. Identities = 245/245 (100%), Positives = 245/245 (100%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL Sbjct: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP Sbjct: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ Sbjct: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY Sbjct: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 Query: 241 ISSNQ 245 ISSNQ Sbjct: 241 ISSNQ 245 >gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 244 Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/242 (82%), Positives = 221/242 (91%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 KNKMRKI+FDIETTGLD KNDRIIEIGAVELLDYSKT RTFQVFL P+G+K +PEALKLH Sbjct: 3 KNKMRKIIFDIETTGLDKKNDRIIEIGAVELLDYSKTGRTFQVFLSPDGKKVNPEALKLH 62 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITDEFL+DKP FS+IF EFWDFFN++NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI Sbjct: 63 GITDEFLRDKPFFSAIFPEFWDFFNDKNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 122 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL+DVY++MMVGGSQI+F Sbjct: 123 VDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLADVYVQMMVGGSQIDF 182 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 GFK NED F +++ NIS LKR+KPL RIT+EE+ EH KTIQ +GKN+IW+RY SS Sbjct: 183 GFKANEDFLFGKDENIAQNISFLKREKPLSLRITEEEIAEHTKTIQMIGKNSIWNRYTSS 242 Query: 244 NQ 245 NQ Sbjct: 243 NQ 244 >gi|150398405|ref|YP_001328872.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419] gi|150029920|gb|ABR62037.1| DNA polymerase III, epsilon subunit [Sinorhizobium medicae WSM419] Length = 242 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 119/234 (50%), Positives = 160/234 (68%), Gaps = 4/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DR+IEIG +EL + T RT +++ P RK PEAL +HGIT Sbjct: 1 MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGDRKVHPEALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FLKDKPSF+ I E DFF +A W+AHNA FD+GFINAE +R+ P+ R+IDT Sbjct: 61 DDFLKDKPSFAEIAQEIVDFFG--DARWVAHNATFDMGFINAEFERLGLPPVGSDRVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR++HGALLDS LL++VYI+ M+GG Q G Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTRHGALLDSELLAEVYIE-MIGGRQAALGLV 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E E P I ++ R++PL R+T+ E+ H + +G NAIW ++ Sbjct: 178 MTETGGRSLEADDGPVI-IVGRERPLRPRLTEAEIAAHAALVSKIGANAIWAKF 230 >gi|15963758|ref|NP_384111.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021] gi|307302561|ref|ZP_07582318.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C] gi|307316108|ref|ZP_07595552.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83] gi|15072933|emb|CAC41392.1| Probable DNA polymerase III, epsilon chain [Sinorhizobium meliloti 1021] gi|306897948|gb|EFN28690.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83] gi|306903231|gb|EFN33821.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C] Length = 242 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 117/236 (49%), Positives = 161/236 (68%), Gaps = 8/236 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DR+IEIG +EL + T RT +++ P RK PEAL +HGIT Sbjct: 1 MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGERKVHPEALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDKP F+ + E DFF +A W+AHNA FD+GFINAE +R+ P+ R+IDT Sbjct: 61 DEFLKDKPPFADVAQEIVDFFG--DARWVAHNATFDIGFINAEFERLGLPPIGSDRVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYG+ SHR++HGALLDS LL++VYI+ M+GG Q G Sbjct: 119 LALARRKHPMGPNSLDALCRRYGVDNSHRTRHGALLDSELLAEVYIE-MIGGRQAALGLV 177 Query: 187 TNE--DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E DR + + V ++ R++PL R+T+ E+ H + +G NAIW +Y Sbjct: 178 VTEAGDRPIEADDGPV---VVVTRERPLRPRLTEAEIAAHAALVAKIGANAIWSKY 230 >gi|209551510|ref|YP_002283427.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537266|gb|ACI57201.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 245 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 120/244 (49%), Positives = 162/244 (66%), Gaps = 8/244 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNVIHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK F+ + E FF +A+WIAHNA FD+GFINAEL RI P+ P R++DT Sbjct: 61 DEFLKDKKPFAEVAEEILTFFG--DAKWIAHNATFDMGFINAELARIGLPPILPERVLDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+ M+GG Q FG Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIE-MIGGRQAAFGLS 177 Query: 187 TNE-----DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 R E+ V S+L+R +PL R+++ E H+ + LG+ IW +Y Sbjct: 178 MTATSGQNGRGDATEEDDVVIASVLERPRPLAPRLSQSEAQAHEALVAKLGEKGIWAKYA 237 Query: 242 SSNQ 245 S +Q Sbjct: 238 SLDQ 241 >gi|227823864|ref|YP_002827837.1| DNA polymerase III subunit epsilon [Sinorhizobium fredii NGR234] gi|227342866|gb|ACP27084.1| DNA polymerase III, epsilon subunit [Sinorhizobium fredii NGR234] Length = 232 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 117/234 (50%), Positives = 159/234 (67%), Gaps = 4/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLDS+ DR+IEIG VEL + T RT +++ P RK P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDSREDRVIEIGGVELENQFPTGRTIHIYINPGDRKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FLKDKPSF+ + E DFF +A W+AHNA FD+GFINAE R+ P+ R+ DT Sbjct: 61 DDFLKDKPSFADVVEEIVDFFG--DARWVAHNATFDIGFINAEFDRLGLPPVVIDRVTDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+ M+GG Q G Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNSHRAKHGALLDSELLAEVYIE-MIGGRQAALGLV 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 T+E + P I +++R++ L R+T+ E+ H + +G AIW +Y Sbjct: 178 TSEIGGLAVQADDGP-IIVMQRERLLAPRLTEAEIAAHAALVSKIGAKAIWMKY 230 >gi|86355674|ref|YP_467566.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42] gi|86279776|gb|ABC88839.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CFN 42] Length = 240 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 117/243 (48%), Positives = 162/243 (66%), Gaps = 8/243 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK F+++ E FF + +WIAHNA FD+GFINAE RI P+ P ++IDT Sbjct: 61 DEFLKDKKPFAAVADEILAFFG--DGKWIAHNATFDMGFINAEFARIGLPPILPDKVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+ M+GG Q FG Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIE-MIGGRQAAFGLS 177 Query: 187 TN-----EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 + R + + + L+R +PL +R+++ E H+ + LG+ IW +Y Sbjct: 178 ISGQPGQAARGEMAMEDDMAFAAALERPRPLGSRLSRSEAQAHEALVAKLGEKGIWAKYA 237 Query: 242 SSN 244 SSN Sbjct: 238 SSN 240 >gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4] gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4] Length = 236 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 118/236 (50%), Positives = 162/236 (68%), Gaps = 6/236 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+SK DR+IEIG +EL ++ T R+F V++ P R P+AL +HGIT Sbjct: 1 MREIVFDTETTGLESKLDRVIEIGGIELFNHFPTGRSFHVYINPADRAIHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 EFLKDKP F+ I + FF+ A+W+AHNA FD+GFINAE +R+ + + P +IDT Sbjct: 61 PEFLKDKPVFADIVEDLVAFFD--GAKWVAHNATFDMGFINAEFERLGRPLVGPEHVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ GG Q FG + Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEML-GGRQATFGLE 177 Query: 187 T--NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 N D+ + + V + + R K L +R+T+ E + H ++ LG+ AIW Y Sbjct: 178 QSGNSDKRSRTQDSNV-TVEIAARPKTLASRLTEAEQERHAALVKRLGQKAIWAHY 232 >gi|325291458|ref|YP_004277322.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3] gi|325059311|gb|ADY63002.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3] Length = 233 Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 117/235 (49%), Positives = 160/235 (68%), Gaps = 5/235 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+SK DR+IEIG +EL ++ T RT +++ P RK P+AL +HGIT Sbjct: 1 MREIIFDTETTGLESKLDRVIEIGGIELNNHFPTGRTLHIYINPEDRKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FLKDKP F+ + E +FF + A W+AHNA FD+GFINAE R+ P+ + DT Sbjct: 61 DDFLKDKPKFAEVVDEIREFF--EGARWVAHNATFDMGFINAEFARLGIAPVSSELVTDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+ M+GG Q GF Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIE-MIGGRQTALGFG 177 Query: 187 T-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + ++ + E VP+ L+R PL +R+ E + H K + +G AIW+RY Sbjct: 178 SGSKQQAVTIEDDDVPH-EPLQRPHPLPSRLDAETIAAHGKLVLGMGDKAIWNRY 231 >gi|218660611|ref|ZP_03516541.1| DNA polymerase III subunit epsilon [Rhizobium etli IE4771] Length = 238 Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 113/241 (46%), Positives = 161/241 (66%), Gaps = 9/241 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK +F+ + E FF +A+WIAHNA FD+GFINAE RI P+ P R++DT Sbjct: 61 DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF- 185 LS+ARRK+P N L++LC+RYG+ SHR+KHGALLDS LL++VYI+ M+GG Q G Sbjct: 119 LSMARRKNPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIE-MIGGRQAALGLG 177 Query: 186 ---KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + E+ + + +L+R +PL R+++ E H+ + LG+ IW ++ S Sbjct: 178 QSGQAAGGEMAMEDDGAI--LEVLERPRPLAPRLSQAEAQAHEALVAKLGEKGIWSKFAS 235 Query: 243 S 243 S Sbjct: 236 S 236 >gi|116249771|ref|YP_765609.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. viciae 3841] gi|115254419|emb|CAK05493.1| putative DNA polymerase subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 240 Score = 238 bits (606), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 117/239 (48%), Positives = 162/239 (67%), Gaps = 8/239 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +F+ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK F+ + + FF +A+WIAHNA FD+GFINAE RI P+ P R++DT Sbjct: 61 DEFLKDKQPFAEVAEQILTFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVLDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF- 185 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+ M+GG Q G Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIE-MIGGRQAALGLG 177 Query: 186 ---KTNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 K+N+ R + V +LL+R +PL R+++ E H+ + LG+ ++W +Y Sbjct: 178 MVGKSNQAARGEMGMEDDVVIAALLERPRPLAPRLSQTEEQAHEALVAKLGEKSVWAKY 236 >gi|190889645|ref|YP_001976187.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652] gi|190694924|gb|ACE89009.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652] Length = 241 Score = 237 bits (605), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 114/243 (46%), Positives = 159/243 (65%), Gaps = 12/243 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK +F+ + E FF +A+WIAHNA FD+GFINAE RI P+ P R++DT Sbjct: 61 DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF- 185 LS+ARRKHP N L++LC+RYG+ SHR+KHGALLDS LL++VYI+ M+GG Q G Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIE-MIGGRQAALGLG 177 Query: 186 ------KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 +T E+ + ++L+R +PL R+++ E H + LG IW + Sbjct: 178 LSGQSGQTARGEMAMEDDGVIS--AVLERPRPLAPRLSQAEAQAHAALVSKLGDKGIWSK 235 Query: 240 YIS 242 + S Sbjct: 236 FAS 238 >gi|327191192|gb|EGE58235.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CNPAF512] Length = 241 Score = 237 bits (605), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 114/243 (46%), Positives = 160/243 (65%), Gaps = 12/243 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK +F+ + E FF +A+WIAHNA FD+GFINAE RI P+ P R++DT Sbjct: 61 DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF- 185 LS+ARRKHP N L++LC+RYG+ SHR+KHGALLDS LL++VYI+ M+GG Q G Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIE-MIGGRQAALGLG 177 Query: 186 ------KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 +T E+ + ++L+R +PL R+++ E H + LG+ IW + Sbjct: 178 LSGQSGQTARGDMAMEDDGVIS--AVLERPRPLAPRLSQAEAQAHAALVSKLGEKGIWSK 235 Query: 240 YIS 242 + S Sbjct: 236 FAS 238 >gi|15887364|ref|NP_353045.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str. C58] gi|15154863|gb|AAK85830.1| DNA polymerase III, epsilon chain [Agrobacterium tumefaciens str. C58] Length = 232 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 114/237 (48%), Positives = 159/237 (67%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+SK DR+IEIG +EL+++ T RT +++ P RK P+AL +HGIT Sbjct: 1 MREIIFDTETTGLESKLDRVIEIGGIELINHFPTGRTLHLYISPEDRKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDKP F+ + + +FF+ A W+AHNA FD+GFINAE R+ +P+ + DT Sbjct: 61 DEFLKDKPKFAEVIDQIREFFD--GARWVAHNATFDMGFINAEFARLGIEPVSAELVTDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRK+P N L++LC+RYGI SHR+KHGALLDS LL++VYI+ M+GG Q GF Sbjct: 119 LSLARRKNPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIE-MIGGRQTALGFG 177 Query: 187 T---NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + E +E+ P L+R L +R+ + + H K + +G AIW+RY Sbjct: 178 SAARQETIIIEEDVPLAP----LQRPSALPSRLDADTIAAHGKLVLGMGDKAIWNRY 230 >gi|222084205|ref|YP_002542731.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84] gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84] Length = 236 Score = 235 bits (599), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 111/237 (46%), Positives = 157/237 (66%), Gaps = 6/237 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD+K DRIIEIG +EL ++ T +T +++ P RK P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNKADRIIEIGGIELFNHFPTGKTLHLYINPGDRKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE LKDKP F+ + E FF + A+WIAHNA FD+GF+NAE R+ + P+ P +IDT Sbjct: 61 DESLKDKPPFADVADEILAFF--EGAKWIAHNATFDMGFVNAEFNRLGRPPILPDMVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYGI SHR++HGALLDS LL++VYI+ M+GG Q G Sbjct: 119 LAMARRKHPMGPNSLDALCRRYGIDNSHRTRHGALLDSELLAEVYIE-MIGGRQTALGLG 177 Query: 187 TNEDRFFKEEKKTVPN---ISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++ + + + +L R +PL R+++ E H + LG+ IW +Y Sbjct: 178 SSNGSSARSRQNNDVEEVVVEILARPQPLPGRVSETEEAAHAALVAKLGEKGIWSKY 234 >gi|241206948|ref|YP_002978044.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860838|gb|ACS58505.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 240 Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 116/239 (48%), Positives = 161/239 (67%), Gaps = 8/239 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +F+ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK F + + FF +A+WIAHNA FD+GFINAEL RI P+ P R++DT Sbjct: 61 DEFLKDKQPFGEVAEQILTFFG--DAKWIAHNATFDMGFINAELARIGLPPILPERVLDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF- 185 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+ M+GG Q G Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIE-MIGGRQAALGLG 177 Query: 186 ---KTNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++N+ R + V ++L+R +PL R++ E H+ + LG+ ++W +Y Sbjct: 178 MVGRSNQAARGDMGMEDDVVIAAVLERPRPLAPRVSDIEEQAHEALVAKLGEKSVWAKY 236 >gi|163757474|ref|ZP_02164563.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43] gi|162284976|gb|EDQ35258.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43] Length = 233 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 115/231 (49%), Positives = 156/231 (67%), Gaps = 4/231 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGLD+K DRIIEIG VEL + T R+ +F+ P+GR P+AL +HGIT Sbjct: 1 MREIVFDTETTGLDNKVDRIIEIGCVELENQFPTGRSLHLFINPDGRAVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FL DKP F+ + E FF+ A ++AHNA FD+GF+NAE RI P+DP +IDT Sbjct: 61 DQFLADKPVFADLADEIAAFFD--GAHYVAHNANFDMGFLNAEFDRIGLPPVDPGLVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARR+HP N L++LC+RYGI +HR+KHGALLD+ LL+DVYI+M GG Q G Sbjct: 119 LALARRRHPMGPNSLDALCRRYGIDNAHRTKHGALLDAELLTDVYIEMR-GGRQAALGLS 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + E EE ++V I + +R L R+T EL+ H + +G +A+W Sbjct: 178 SAEAGNKTEESESV-VIEIGERPGKLPERLTAGELEAHSTLVNRIGADALW 227 >gi|239833112|ref|ZP_04681441.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG 3301] gi|239825379|gb|EEQ96947.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG 3301] Length = 233 Score = 231 bits (588), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 112/236 (47%), Positives = 152/236 (64%), Gaps = 3/236 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF ++ P GR+ EAL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHAEALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP+F+ I EF +FF+ A+ +AHNA FD+GFINAEL R+ + + R++DT Sbjct: 61 NEQLLDKPTFAEILDEFLEFFD--GAKLVAHNAMFDLGFINAELARLGQAEIQVERVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI HR+ HGALLDS +L++VYI+ ++GG Q G Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENGHRTLHGALLDSEILAEVYIE-LIGGKQTALGLS 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + I L R +PL RI+ EE H + LG AIW +Y+S Sbjct: 178 IGGTASGSNAGDSGAAIILAARPRPLAPRISDEERAAHAALVAGLGDKAIWKKYLS 233 >gi|153008185|ref|YP_001369400.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC 49188] gi|151560073|gb|ABS13571.1| DNA polymerase III, epsilon subunit [Ochrobactrum anthropi ATCC 49188] Length = 231 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 112/234 (47%), Positives = 151/234 (64%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF ++ P GR+ PEAL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHPEALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP+F+ + EF +FF+ A+ +AHNA FD+GFINAEL R+ + + RIIDT Sbjct: 61 NEQLLDKPTFAEVLDEFLEFFD--GAKLVAHNAMFDLGFINAELARLGQAEIQSERIIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI HR+ HGALLDS +L++VYI+ ++GG Q G Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENGHRTLHGALLDSEILAEVYIE-LIGGKQTALGLS 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++ I L R +PL RI+ E H + LG AIW +Y Sbjct: 178 MGGAVSGNNAGESGAAIVLAARPRPLAPRISDAERAAHAALVDKLGDKAIWKKY 231 >gi|114706065|ref|ZP_01438968.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506] gi|114538911|gb|EAU42032.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506] Length = 242 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 111/235 (47%), Positives = 158/235 (67%), Gaps = 4/235 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGLD+ DR+IEIG VEL ++ T +T+ ++ P GRK P A +HGI+ Sbjct: 1 MREIVFDTETTGLDNTIDRVIEIGGVELWNHIPTGKTYHQYIRPAGRKVDPAAFDVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFL DKP F I EF FF+ +A+ IAHNA FD+GF+NAELQR+ P++PS +IDT Sbjct: 61 DEFLLDKPLFEEIADEFVAFFS--DAKLIAHNANFDIGFLNAELQRLRHPPIEPSLVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRK P + L++LC R+ + S R KHGALLDS LL+DVYI+ ++GG Q + G Sbjct: 119 LAMARRKFPMAPASLDALCSRFAVDTSKREKHGALLDSELLADVYIE-LIGGRQSSLGLI 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 D + + P +++ R+ PL R++++E H +++LG A+W RY+ Sbjct: 178 VEADETYASGEAGGP-VAVSAREAPLAPRLSEDEASRHLAFVESLGDEALWWRYL 231 >gi|110635810|ref|YP_676018.1| DNA polymerase III subunit epsilon [Mesorhizobium sp. BNC1] gi|110286794|gb|ABG64853.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1] Length = 242 Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 112/237 (47%), Positives = 160/237 (67%), Gaps = 4/237 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD + DR+IE+G VEL + T RT F+ P GR P+A +HGI+ Sbjct: 1 MREIIFDTETTGLDPREDRVIELGCVELANRFPTGRTLHYFINPQGRSVHPDAQAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D L KP F+ I EF +F + A+ +AHNA FD+GFINAE QR+ + +DP+R+IDT Sbjct: 61 DADLAGKPVFAEILDEFLEFID--GAKLVAHNANFDIGFINAEFQRVGQPYIDPARVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+IARRKHP N L++LC+RYGI SHR+KHGALLD+ LL++VYI+ + GG Q +FG + Sbjct: 119 LAIARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDAELLAEVYIE-LAGGKQASFGLE 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 +E +V ++L R +PL +R+T EE H+ + +G+NA+W + + + Sbjct: 178 IATQGVAEETSSSV-IVALPPRPRPLRSRLTPEEQQAHEALVAGIGENALWRKLMPA 233 >gi|225626451|ref|ZP_03784490.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo] gi|225618108|gb|EEH15151.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo] Length = 248 Score = 224 bits (572), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 110/242 (45%), Positives = 156/242 (64%), Gaps = 6/242 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL + Sbjct: 11 RGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++E L DKP F+ I EF +F + A +AHNA FD+GFINAEL R+++ + Sbjct: 71 HGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEH 128 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+ ++GG Q Sbjct: 129 IVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIE-LIGGKQTA 187 Query: 183 FGFKTNEDRFFKEEK--KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 G + + + P + L R +PL RI+ E H ++ +G A+W +Y Sbjct: 188 LGLTMESGSAGGDSRGNGSAP-VVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKY 246 Query: 241 IS 242 +S Sbjct: 247 LS 248 >gi|237816422|ref|ZP_04595415.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A] gi|237788489|gb|EEP62704.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A] Length = 248 Score = 224 bits (571), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 110/242 (45%), Positives = 156/242 (64%), Gaps = 6/242 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL + Sbjct: 11 RGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++E L DKP F+ I EF +F + A +AHNA FD+GFINAEL R+++ + Sbjct: 71 HGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEH 128 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+ ++GG Q Sbjct: 129 IVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIE-LIGGKQTA 187 Query: 183 FGFKTNEDRFFKEEK--KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 G + + + P + L R +PL RI+ E H ++ +G A+W +Y Sbjct: 188 LGLTMESGSAGGDSRGNGSAP-VVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKY 246 Query: 241 IS 242 +S Sbjct: 247 LS 248 >gi|17988339|ref|NP_540973.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. 16M] gi|17984115|gb|AAL53237.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str. 16M] Length = 248 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 110/242 (45%), Positives = 156/242 (64%), Gaps = 6/242 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL + Sbjct: 11 RGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++E L DKP F+ I EF +F + A +AHNA FD+GFINAEL R+++ + Sbjct: 71 HGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEH 128 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+ ++GG Q Sbjct: 129 IVDTLALARRKHPIGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIE-LIGGKQTA 187 Query: 183 FGFKTNEDRFFKEEK--KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 G + + + P + L R +PL RI+ E H ++ +G A+W +Y Sbjct: 188 LGLTMESGSAGGDSRGNGSAP-VVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKY 246 Query: 241 IS 242 +S Sbjct: 247 LS 248 >gi|256370469|ref|YP_003107980.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915] gi|256000632|gb|ACU49031.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915] Length = 234 Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 109/238 (45%), Positives = 154/238 (64%), Gaps = 6/238 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP F+ I EF +F + A +AHNA FD+GFINAEL R+++ + I+DT Sbjct: 61 NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+ ++GG Q G Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENSHRTLHGALLDAQILAEVYIE-LIGGKQTALGLT 177 Query: 187 TNEDRFFKEEK--KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + + P + L R +PL RI+ E H ++ +G A+W +Y+S Sbjct: 178 MESGSAGGDSRGNGSAP-VVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234 >gi|254718114|ref|ZP_05179925.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13] gi|265983066|ref|ZP_06095801.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13] gi|306839740|ref|ZP_07472542.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653] gi|306842813|ref|ZP_07475453.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2] gi|306843489|ref|ZP_07476090.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1] gi|264661658|gb|EEZ31919.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13] gi|306276180|gb|EFM57880.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1] gi|306287007|gb|EFM58518.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2] gi|306405200|gb|EFM61477.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653] Length = 234 Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 109/238 (45%), Positives = 154/238 (64%), Gaps = 6/238 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP F+ I EF +F + A +AHNA FD+GFINAEL R+++ + I+DT Sbjct: 61 NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEIASEHIVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+ ++GG Q G Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIE-LIGGKQTALGLT 177 Query: 187 TNEDRFFKEEK--KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + + P + L R +PL RI+ E H ++ +G A+W +Y+S Sbjct: 178 MESGSAGGDSRGNGSAP-VVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234 >gi|23502919|ref|NP_699046.1| DNA polymerase III subunit epsilon [Brucella suis 1330] gi|62290915|ref|YP_222708.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str. 9-941] gi|82700826|ref|YP_415400.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar Abortus 2308] gi|148559666|ref|YP_001259876.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840] gi|161619985|ref|YP_001593872.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365] gi|163844089|ref|YP_001628493.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445] gi|189025128|ref|YP_001935896.1| DNA polymerase III subunit epsilon [Brucella abortus S19] gi|254690204|ref|ZP_05153458.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str. 870] gi|254694694|ref|ZP_05156522.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str. Tulya] gi|254696321|ref|ZP_05158149.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str. 86/8/59] gi|254700703|ref|ZP_05162531.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513] gi|254705074|ref|ZP_05166902.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686] gi|254709049|ref|ZP_05170860.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94] gi|254713525|ref|ZP_05175336.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1] gi|254716120|ref|ZP_05177931.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1] gi|254731237|ref|ZP_05189815.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str. 292] gi|256030574|ref|ZP_05444188.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M292/94/1] gi|256060036|ref|ZP_05450218.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33] gi|256158570|ref|ZP_05456460.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1] gi|256253981|ref|ZP_05459517.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94] gi|256258458|ref|ZP_05463994.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str. C68] gi|260169479|ref|ZP_05756290.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99] gi|260546177|ref|ZP_05821917.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260567458|ref|ZP_05837928.1| DNA polymerase III [Brucella suis bv. 4 str. 40] gi|260755744|ref|ZP_05868092.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str. 870] gi|260758968|ref|ZP_05871316.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str. 292] gi|260760692|ref|ZP_05873035.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str. 86/8/59] gi|260884770|ref|ZP_05896384.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str. C68] gi|261215021|ref|ZP_05929302.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str. Tulya] gi|261217890|ref|ZP_05932171.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1] gi|261221121|ref|ZP_05935402.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94] gi|261316547|ref|ZP_05955744.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94] gi|261321260|ref|ZP_05960457.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1] gi|261324012|ref|ZP_05963209.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33] gi|261751212|ref|ZP_05994921.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513] gi|261755776|ref|ZP_05999485.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686] gi|261759005|ref|ZP_06002714.1| DNA polymerase III [Brucella sp. F5/99] gi|265987621|ref|ZP_06100178.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M292/94/1] gi|265997081|ref|ZP_06109638.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1] gi|294851300|ref|ZP_06791973.1| DNA polymerase III [Brucella sp. NVSL 07-0026] gi|297247299|ref|ZP_06931017.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str. B3196] gi|23348951|gb|AAN30961.1| DNA polymerase III, epsilon subunit [Brucella suis 1330] gi|62197047|gb|AAX75347.1| DnaQ, DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str. 9-941] gi|82616927|emb|CAJ12028.1| Beta tubulin:DNA polymerase III, epsilon subunit:Exonuclease:DNA polymerase 3, epsilon subunit [Brucella melitensis biovar Abortus 2308] gi|148370923|gb|ABQ60902.1| DNA polymerase III, epsilon subunit [Brucella ovis ATCC 25840] gi|161336796|gb|ABX63101.1| DNA polymerase III, epsilon subunit [Brucella canis ATCC 23365] gi|163674812|gb|ABY38923.1| DNA polymerase III, epsilon subunit [Brucella suis ATCC 23445] gi|189020700|gb|ACD73422.1| DNA polymerase III, epsilon subunit [Brucella abortus S19] gi|260096284|gb|EEW80160.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260156976|gb|EEW92056.1| DNA polymerase III [Brucella suis bv. 4 str. 40] gi|260669286|gb|EEX56226.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str. 292] gi|260671124|gb|EEX57945.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str. 86/8/59] gi|260675852|gb|EEX62673.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str. 870] gi|260874298|gb|EEX81367.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str. C68] gi|260916628|gb|EEX83489.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str. Tulya] gi|260919705|gb|EEX86358.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94] gi|260922979|gb|EEX89547.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1] gi|261293950|gb|EEX97446.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1] gi|261295770|gb|EEX99266.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94] gi|261299992|gb|EEY03489.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33] gi|261738989|gb|EEY26985.1| DNA polymerase III [Brucella sp. F5/99] gi|261740965|gb|EEY28891.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513] gi|261745529|gb|EEY33455.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686] gi|262551549|gb|EEZ07539.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1] gi|264659818|gb|EEZ30079.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M292/94/1] gi|294819889|gb|EFG36888.1| DNA polymerase III [Brucella sp. NVSL 07-0026] gi|297174468|gb|EFH33815.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str. B3196] Length = 234 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 109/238 (45%), Positives = 154/238 (64%), Gaps = 6/238 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP F+ I EF +F + A +AHNA FD+GFINAEL R+++ + I+DT Sbjct: 61 NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+ ++GG Q G Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIE-LIGGKQTALGLT 177 Query: 187 TNEDRFFKEEK--KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + + P + L R +PL RI+ E H ++ +G A+W +Y+S Sbjct: 178 MESGSAGGDSRGNGSAP-VVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234 >gi|225853502|ref|YP_002733735.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457] gi|256045675|ref|ZP_05448553.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. Rev.1] gi|256263016|ref|ZP_05465548.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|260562976|ref|ZP_05833462.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|265992096|ref|ZP_06104653.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. Rev.1] gi|225641867|gb|ACO01781.1| DNA polymerase III, epsilon subunit [Brucella melitensis ATCC 23457] gi|260152992|gb|EEW88084.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|263003162|gb|EEZ15455.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. Rev.1] gi|263092889|gb|EEZ17064.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|326410068|gb|ADZ67133.1| DNA polymerase III subunit epsilon [Brucella melitensis M28] gi|326539784|gb|ADZ87999.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90] Length = 234 Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 109/238 (45%), Positives = 154/238 (64%), Gaps = 6/238 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP F+ I EF +F + A +AHNA FD+GFINAEL R+++ + I+DT Sbjct: 61 NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+ ++GG Q G Sbjct: 119 LALARRKHPIGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIE-LIGGKQTALGLT 177 Query: 187 TNEDRFFKEEK--KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + + P + L R +PL RI+ E H ++ +G A+W +Y+S Sbjct: 178 MESGSAGGDSRGNGSAP-VVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234 >gi|90420992|ref|ZP_01228896.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans SI85-9A1] gi|90334770|gb|EAS48546.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans SI85-9A1] Length = 239 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 113/235 (48%), Positives = 155/235 (65%), Gaps = 6/235 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGLD +R+IEIG VEL ++ T + + F+ P GRK P A +HGI+ Sbjct: 1 MREIVFDTETTGLDPDVERVIEIGGVELWNHIPTGKNYHAFIRPAGRKVDPAAFDVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FL DKP FS I EF +FF+ A+ IAHNA FDV F+NAEL+RI++ P+DPS +IDT Sbjct: 61 DDFLADKPLFSEIADEFLEFFS--GAKLIAHNAAFDVRFLNAELKRIDQPPIDPSVVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +ARRK P + L++LC R+ + S R KHGALLDS LL++VYI+ ++GG Q G Sbjct: 119 LPMARRKFPMAPATLDALCSRFSVDTSRRDKHGALLDSELLAEVYIE-LIGGRQAALGLA 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 ED ++ V I+ R PL +R++++E+ H + TLG AIW Y+ Sbjct: 178 VEEDA-HEDADGNVWRIA--PRPVPLPSRLSQDEIVRHRAFVSTLGDEAIWWNYL 229 >gi|218513681|ref|ZP_03510521.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3] Length = 229 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 100/179 (55%), Positives = 132/179 (73%), Gaps = 3/179 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK +F+ + E FF +A+WIAHNA FD+GFINAE RI P+ P R++DT Sbjct: 61 DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 LS+ARRKHP N L++LC+RYG+ SHR+KHGALLDS LL++VYI+ M+GG Q G Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIE-MIGGRQAALGL 176 >gi|13473785|ref|NP_105353.1| DNA polymerase III subunit epsilon [Mesorhizobium loti MAFF303099] gi|14024536|dbj|BAB51139.1| DNA polymerase III epsilon chain [Mesorhizobium loti MAFF303099] Length = 240 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 104/239 (43%), Positives = 153/239 (64%), Gaps = 4/239 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLDS++DR+IE+G VEL++ T RTF ++ P GR EA +HGI+ Sbjct: 1 MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHEEAQAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L KP+F+ I E+ F + A+ +AHNA FD+GF+N E R+ +DP R++DT Sbjct: 61 AADLAGKPTFAEIAEEWLTFTD--GAKLVAHNATFDIGFLNVEFGRLGHPVVDPGRVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYGI + R+KHGALLDS LL++VYI+ ++GG Q Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNTKRTKHGALLDSELLAEVYIE-LIGGKQAALILD 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245 + E + + I + +R +PL R+T+ E H + TLG+ A+W + SS + Sbjct: 178 SATAPAQGENVRHI-EIIVAERPRPLLPRLTEAERAAHAAMVATLGEKALWLKANSSEK 235 >gi|323135821|ref|ZP_08070904.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242] gi|322398912|gb|EFY01431.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242] Length = 239 Score = 208 bits (529), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 110/238 (46%), Positives = 149/238 (62%), Gaps = 10/238 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD SK DR++EIGAVE+L+ T R F ++ P R EA ++HG+ Sbjct: 1 MREIVFDTETTGLDPSKGDRVVEIGAVEILNLIPTGRVFHAYIDPE-RDMPEEAFRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL F I EF DF +++ +AHNA+FDV FINAE +N PL P+RI+D Sbjct: 60 SREFLSQHRKFREIAEEFIDFI--EDSPMVAHNAEFDVRFINAEFSMLNFAPLAPARIVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARR HP S L++LC+RYGI +S R KHGALLD+ LL++VY ++M GG Q Sbjct: 118 TLAIARRLHPGSPASLDALCQRYGIDLSRRDKHGALLDAGLLAEVYAELM-GGRQAALSL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 +T ++ + L R PL R+T E + H + L K+AIWDRY++ Sbjct: 177 QT-----VSVSRRAQTSDLLRARPAPLEDRLTPAEDEAHRAFVAGLSKSAIWDRYLTG 229 >gi|260467189|ref|ZP_05813366.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum WSM2075] gi|259029042|gb|EEW30341.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum WSM2075] Length = 241 Score = 207 bits (528), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 103/237 (43%), Positives = 147/237 (62%), Gaps = 3/237 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLDS++DR+IE+G VEL++ T RTF ++ P GR EA +HGI+ Sbjct: 1 MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHAEAQAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L KP+F+ I E+ F + A+ +AHNA FD+GF+N E R+ +DP ++DT Sbjct: 61 AADLAGKPTFAEIVEEWLAFTD--GAKLVAHNATFDIGFLNVEFGRLGHPVIDPGLVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYGI + R+KHGALLDS LL++VYI+ ++GG Q Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNAKRTKHGALLDSELLAEVYIE-LIGGKQAALILD 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 + + E I R PL R+T+ E H + TLG+ A+W + SS Sbjct: 178 SATAPAQRGENVRHIEIIAAVRPGPLLPRLTEAERAAHAAMVATLGEKALWLKATSS 234 >gi|240849687|ref|YP_002971075.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup] gi|240266810|gb|ACS50398.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup] Length = 235 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 109/236 (46%), Positives = 154/236 (65%), Gaps = 7/236 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD + DRIIEIG VE++D T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRQFHVYLNPEGVIIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK++ SFS I EF +F + A IAHNA FD+GFINAEL+R+NK + I+DT Sbjct: 61 NERLKNEKSFSDIVDEFLEFI--KGATMIAHNASFDIGFINAELKRVNKPLISVDNILDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFG 184 L++ARRK P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+ ++GG Q + FG Sbjct: 119 LAMARRKFPMGPNSLDILCKRFGIDNSHRVLHGALLDAEILADVYIE-LIGGKQGVLGFG 177 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + D + +K T + + R + L +R++ +E H I T+G+ A+W+ + Sbjct: 178 NRRGVDEHIQNDKDTSYAVKI--RPQALPSRLSMQEKRLHADFINTMGEKALWNNF 231 >gi|220921281|ref|YP_002496582.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS 2060] gi|219945887|gb|ACL56279.1| DNA polymerase III, epsilon subunit [Methylobacterium nodulans ORS 2060] Length = 238 Score = 202 bits (513), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 100/239 (41%), Positives = 150/239 (62%), Gaps = 10/239 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +R+IV D ETTG D+K DR+IEIG +ELL++ T R F ++ P R S A +HG++ Sbjct: 2 LREIVLDTETTGTDAKTDRLIEIGGIELLNHIPTGREFHRYINPQ-RAVSQGAFAVHGLS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRI 123 D FL DKP F+ I +F DF +A ++ HNA FDVGF+NAE R+ + P++ S + Sbjct: 61 DAFLADKPLFAEILPDFLDFCG--DATFVIHNAAFDVGFLNAEYARLGETAPPPIELSAV 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL++ARRKHP++ N+L++LC RYGI S R+KHGALLD+ +L++VYI+++ GG Q + Sbjct: 119 VDTLALARRKHPNAANNLDALCARYGIDNSRRTKHGALLDAQILAEVYIELL-GGKQTSL 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G + ++ P + + + +R+T E H +LG NA+W YI Sbjct: 178 GLTLEAASIVRVTQEAGP---VAHGPRSVRSRLTDAERTAHAAFTASLGANAVWRDYIG 233 >gi|49473693|ref|YP_031735.1| DNA polymerase III epsilon chain [Bartonella quintana str. Toulouse] gi|49239196|emb|CAF25512.1| DNA polymerase III epsilon chain [Bartonella quintana str. Toulouse] Length = 235 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 152/234 (64%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD + DRIIEIG VE++D T + F V+L P G S EA+ +HG+T Sbjct: 1 MREIIFDTETTGLDKEKDRIIEIGCVEMIDRYLTGKRFHVYLNPQGVVISDEAVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK++ SFS I E +F + A +AHNA FD+GF+NAEL R+NK + I+DT Sbjct: 61 NERLKNEKSFSDIADELLEFIS--GATMVAHNASFDIGFLNAELGRVNKPLISVDNILDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRK P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+ ++GG Q GF+ Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGIDNSHRVFHGALLDAEILADVYIE-LIGGKQGVLGFE 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++ + +++ R +PL R++ +E H I+ +G+ A+W+ + Sbjct: 178 NSKSVEQDSQNDKNALLAVKVRPQPLSPRLSAQEKIMHADFIKKIGEKALWNFF 231 >gi|319404918|emb|CBI78518.1| DNA polymerase III epsilon chain [Bartonella sp. AR 15-3] Length = 235 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 106/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+ ++DRIIEIG +E+++ T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVIAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LKD+ +F I DF + NA +AHNA FD+GF+NAEL R+NK + +IDT Sbjct: 61 NEHLKDEKNFEDIVDALLDFID--NATIVAHNANFDIGFLNAELGRVNKPLVSSDNVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LSIARR+ P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+ ++GG Q F F Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIE-LIGGKQGIFSFD 177 Query: 187 TNE--DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E D ++ K V ++ R + L R++K+E + H I+ +G A+W+R+ Sbjct: 178 NYENFDVMNVQDSKNVF-YTVKMRSQALPQRLSKQEKNMHANLIKKIGDKALWNRF 232 >gi|121602632|ref|YP_988343.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis KC583] gi|120614809|gb|ABM45410.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis KC583] Length = 234 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 106/236 (44%), Positives = 149/236 (63%), Gaps = 7/236 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD NDRIIEIG VE++D T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLDKDNDRIIEIGCVEMVDRYLTGRQFHVYLNPQGVIIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK + F I E +F + A IAHNA FD+ F+NAEL+R+NK + +IDT Sbjct: 61 NERLKGEKKFDDIADELLEFID--GAMMIAHNANFDISFLNAELKRVNKPLISIDNVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRK P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+ ++GG Q GF Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGIDNSHRILHGALLDAEILADVYIE-LIGGKQGTLGFY 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + R E + NIS + + +P L R++++E H + +GK A+W+++ Sbjct: 178 NSNGRHLNTENGS--NISYVFKIRPQALPPRLSEQEKSMHADLVNQIGKKALWNQF 231 >gi|163867311|ref|YP_001608505.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476] gi|161016952|emb|CAK00510.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476] Length = 235 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 109/236 (46%), Positives = 149/236 (63%), Gaps = 7/236 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD + DRIIEIG VE++D T F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGCQFHVYLNPEGVIIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK++ SFS I EF +F N A IAHNA FD+GFINAEL+R+NK + IIDT Sbjct: 61 NERLKNEKSFSDIVDEFLEFIN--GATMIAHNASFDIGFINAELKRVNKPLISVDNIIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF- 185 L++ARRK P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+ ++GG Q GF Sbjct: 119 LAMARRKFPMGPNSLDILCKRFGIDNSHRVLHGALLDAEILADVYIE-LIGGKQGVLGFD 177 Query: 186 -KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 K N D + + + R + L +R++ +E H I +G+ A+W+ + Sbjct: 178 NKRNLDEHIQNDTDMSYAVKF--RPQALPSRLSAQEKKLHADFINKMGEKALWNTF 231 >gi|319406407|emb|CBI80047.1| DNA polymerase III epsilon chain [Bartonella sp. 1-1C] Length = 235 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 105/237 (44%), Positives = 150/237 (63%), Gaps = 8/237 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+ ++DRIIEIG +E+++ T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLNKESDRIIEIGCIEMVNRYLTGRRFHVYLNPQGVVIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LKD+ F I DF + A +AHNA FD+GF+NAEL+R+NK ++ +IDT Sbjct: 61 NERLKDEKKFDDIVDALLDFID--GATIVAHNANFDIGFLNAELERVNKPLINSDNVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LSIARR+ P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+ ++GG Q F F Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIE-LIGGKQGIFSFD 177 Query: 187 TNED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E ++ K P I + R + L R++K+E D H I+ +G A+W+ + Sbjct: 178 NYESCDVMNVQDNKNAFPTIKI--RSQALPQRLSKQEKDMHIDLIKKIGDKALWNHF 232 >gi|319898197|ref|YP_004158290.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73] gi|319402161|emb|CBI75687.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73] Length = 235 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 105/236 (44%), Positives = 153/236 (64%), Gaps = 6/236 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+ ++DRIIEIG +E+++ T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LKD+ F I DF + A +AHNA FD+GF+NAEL+R+NK + + +IDT Sbjct: 61 NERLKDEKKFDDIVDALLDFID--GATIVAHNANFDIGFLNAELERVNKPLVSINHVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+IARR+ P+ N L+ LCKR+GI SHR HGALLD+ +L+DVYI+ ++GG Q FGF Sbjct: 119 LAIARRRFPTGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIE-LIGGKQGIFGFD 177 Query: 187 TNE--DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E D ++ K + + + R PL R++K+E D H I+ +G A+W+ + Sbjct: 178 NCEDFDVMSVQDGKNAFHTTKI-RFHPLPQRLSKQEKDMHANLIKKIGDKALWNHF 232 >gi|304392717|ref|ZP_07374657.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130] gi|303295347|gb|EFL89707.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130] Length = 249 Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 99/240 (41%), Positives = 151/240 (62%), Gaps = 8/240 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M I+FD ETTGL +K+ DR+IEIGAVE+ D T RTF ++ P R+ P+AL++HGI Sbjct: 1 MHAIIFDTETTGLSAKDGDRVIEIGAVEMKDLIPTGRTFHQYIHPGDREIHPDALRVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E L D+P F ++ F DF +A +AHNA FD+GF+NAE R+N P DP ++D Sbjct: 61 TMERLADEPRFEAVGQSFIDFCG--DAMLVAHNAPFDIGFLNAEYARMNLPPCDPELVLD 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ AR+K P +R L+ LC R+ I+ ++R HGALLD+ LL++V+I++M GG+Q+ GF Sbjct: 119 TVQAARKKFPGARVSLDMLCDRFNISRANRVLHGALLDARLLAEVFIELM-GGAQVKMGF 177 Query: 186 ----KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 +T+ R ++ + +R + +T EE + H+ +GK A+W++Y+ Sbjct: 178 DDEAETDAQRADPRNRRQTQHPPQPQRPSAMVYELTPEERERHNAMRAKIGKGALWNQYL 237 >gi|328541691|ref|YP_004301800.1| DNA polymerase III, epsilon subunit [polymorphum gilvum SL003B-26A1] gi|326411443|gb|ADZ68506.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum SL003B-26A1] Length = 240 Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 103/242 (42%), Positives = 150/242 (61%), Gaps = 13/242 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHG 64 MR+I FD ETTGLD +N DR++EIG VEL ++ T T+ V++ P ++ PEA +HG Sbjct: 1 MREIAFDTETTGLDPRNGDRLVEIGGVELFNHVPTGNTYHVYINPE--RDMPEAAFNVHG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ++ EFL DKP F+ I EF F +A + HNA FD+GFIN EL R + P+ ++++ Sbjct: 59 LSAEFLADKPVFAEIVDEFLAFVG--DARLVIHNAAFDMGFINMELSRAGRLPIPRTQVL 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +ARRKHP N L++LC RYGI S R++HGALLDS LL++VY++ ++GG Q G Sbjct: 117 DTLELARRKHPMGPNSLDALCGRYGIDNSRRTRHGALLDSELLAEVYLE-LIGGRQTALG 175 Query: 185 FKTNED----RFFKEEKKTVPNI--SLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 E+ + + + + P S R PL + +T+EE H + +G+ AIW Sbjct: 176 LVLQEEVSGRSYGGQSEGSGPAQVRSAPPRPVPLASWLTEEEKAAHATFVAGMGETAIWS 235 Query: 239 RY 240 +Y Sbjct: 236 KY 237 >gi|170739343|ref|YP_001767998.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46] gi|168193617|gb|ACA15564.1| DNA polymerase III, epsilon subunit [Methylobacterium sp. 4-46] Length = 238 Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 99/241 (41%), Positives = 148/241 (61%), Gaps = 10/241 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +R+IV D ETTG D+K DR++EIG +ELL++ T R F ++ P R S AL +HG+ Sbjct: 2 LREIVLDTETTGTDAKTDRLVEIGGIELLNHIPTGREFHRYINPQ-RPVSQGALAVHGLA 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSRI 123 D FL DKP F++I F DF + A ++ HNA FDVGF+NAE R+ +D + + Sbjct: 61 DAFLADKPPFAAILPAFLDFCGD--ATFVIHNAAFDVGFLNAEYARLGDAAPPAIDLAGV 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL++ARRKHP++ N+L++LC RYGI S R+KHGALLD+ +L++VYI+++ GG Q + Sbjct: 119 VDTLALARRKHPNAANNLDALCARYGIDNSRRTKHGALLDAQILAEVYIELL-GGKQTSL 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 G + + P + + + +R+T+ E + H LG AIW YI Sbjct: 178 GLTLDVASTVRVATLGGPAAHV---PRAVRSRLTQAEREAHAAFTAGLGGGAIWRDYIGE 234 Query: 244 N 244 + Sbjct: 235 D 235 >gi|296444995|ref|ZP_06886956.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium OB3b] gi|296257416|gb|EFH04482.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium OB3b] Length = 242 Score = 197 bits (502), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 102/237 (43%), Positives = 147/237 (62%), Gaps = 9/237 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD +K RI+EIGAVE+ + T RTF +L P R EA ++HG+ Sbjct: 1 MREIVFDTETTGLDPAKGHRIVEIGAVEISNLIPTGRTFHFYLDPE-RDMPEEAFRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL + F I F +F +A+ +AHNA+FD+ F+NAEL + + + R++D Sbjct: 60 STAFLTGQKKFREIAEAFLEFV--ADAQLVAHNAEFDMRFVNAELAMLGLEAIAADRVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARR HP + N L++LC+RYG+ S R KHGALLDS+LL++VY ++M GG Q Sbjct: 118 TLTIARRLHPGAANSLDALCQRYGVDSSRRDKHGALLDSYLLAEVYAELM-GGRQSALVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 +T+ + + L R PL R+ +EE+ H++ TLGK IW RY++ Sbjct: 177 QTS----VAAAAQDLGADLLRSRPAPLAPRLAEEEIAAHERFAATLGKAPIWSRYLT 229 >gi|198282704|ref|YP_002219025.1| DNA polymerase III subunit epsilon [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665705|ref|YP_002424896.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247225|gb|ACH82818.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517918|gb|ACK78504.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 248 Score = 197 bits (502), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 105/241 (43%), Positives = 152/241 (63%), Gaps = 13/241 (5%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R++V D ETTG+D K R+IEIGAVEL+D T +Q +L P R + PEAL++HG+ Sbjct: 3 VRQVVLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQ-RSSDPEALRIHGL 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDEFL+D+P F+ + F +F +AE I HNA FD+GF+N ELQ K PL + ++D Sbjct: 62 TDEFLQDQPGFAEVADAFLEFLG--DAELIIHNAPFDLGFLNHELQLAGKAPLRQA-VMD 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM------MVGGS 179 TL+ ARR+HP +NDLNSLC+RY + SHR HGALLD+ +L++VY+ M M+G Sbjct: 119 TLADARRRHPGQKNDLNSLCRRYSVENSHRELHGALLDTRILAEVYLAMTGGQVDMMGML 178 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK-PL-FTRITKEELDEHDKTIQTLGKNAIW 237 G E R +++++ + L R + PL R + EE H + +Q +G NA+W Sbjct: 179 GAAGGSAATEMRSAGDDRRSEGIPAALSRPRGPLRVIRASAEECMLHRQYLQNMGGNALW 238 Query: 238 D 238 + Sbjct: 239 E 239 >gi|298293766|ref|YP_003695705.1| DNA polymerase III subunit epsilon [Starkeya novella DSM 506] gi|296930277|gb|ADH91086.1| DNA polymerase III, epsilon subunit [Starkeya novella DSM 506] Length = 232 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 102/238 (42%), Positives = 144/238 (60%), Gaps = 8/238 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ DR++EIG VE+ + T +TF V+L P R EA +HG+ Sbjct: 1 MREIVLDTETTGLNPLTGDRLVEIGCVEIFNRIPTGQTFHVYLNPE-RDMPLEAFNVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+++ +F F + HNA FD+GFINAEL R+ + L R++D Sbjct: 60 SAEFLSDKPLFAAVVDDFLAFI--AGDPLVIHNAAFDIGFINAELARLARPALTFDRVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TLS+ARR+HP + N L+ L RYGI S R+KHGALLDS LL+DVY + + GG Q G Sbjct: 118 TLSLARRRHPGASNRLDDLMNRYGIDGSRRTKHGALLDSELLADVYAE-LCGGRQTALGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 E E+++ + L+R +PL R+ ++ H+ + TLG +AIW Y + Sbjct: 177 TVVETTVVLAERQSA---APLQRPRPLAPRLDAAQVATHEAFVATLGDSAIWKDYAAG 231 >gi|182680101|ref|YP_001834247.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182635984|gb|ACB96758.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 236 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 104/237 (43%), Positives = 151/237 (63%), Gaps = 11/237 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64 MR+IV D ETTGLD ++ RIIEIG +E+L T + F V++ P +++ PE A+++HG Sbjct: 1 MREIVLDTETTGLDPAEGHRIIEIGCIEILHTIPTGQIFHVYIDP--QRDIPEDAVRVHG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT EFL KP F+ I SEF F +A+ +AHNA FD+ F+NAEL + +P+D R++ Sbjct: 59 ITAEFLAGKPVFADIASEFLAFIG--DAKLVAHNAAFDMRFLNAELGLLGLEPIDSERVV 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++ARR+HP + N L++LC RYGI + R+KHGALLDS +L+DVY +++ GG Q Sbjct: 117 DTLALARRRHPGASNSLDALCNRYGIDNTRRTKHGALLDSEILADVYAELL-GGRQAALT 175 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F+T ++ P +R PL + ++ +E D H I LG AIW Y+ Sbjct: 176 FET-ATALRQDNTHQTP---FRQRPVPLESALSSQERDAHRAFIAKLGDKAIWVSYL 228 >gi|49474836|ref|YP_032877.1| DNA polymerase III epsilon chain [Bartonella henselae str. Houston-1] gi|49237641|emb|CAF26821.1| DNA polymerase III epsilon chain [Bartonella henselae str. Houston-1] Length = 235 Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 147/234 (62%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD + DRIIEIG VE++D T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRRFHVYLNPQGVIIPDEVVAVHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK++ SFS I EF +F N A IAHNA FD+GF+NAEL R NK + I+DT Sbjct: 61 NERLKNEKSFSDIADEFLEFIN--GATMIAHNASFDIGFLNAELARANKPLISVDNILDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRK P + N L+ LCKR+GI SHR HGALLD+ +L+D+YI+ ++GG Q F Sbjct: 119 LAMARRKFPMAPNSLDVLCKRFGIDNSHRVFHGALLDAEILADIYIE-LIGGKQGVLVFG 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 N + E ++ R + L R++ +E H ++ +G+ A+W+ + Sbjct: 178 NNGSVHEESENDKNAFSAVKIRPQNLSPRLSVQEKTMHADFVKKMGEKALWNSF 231 >gi|319407879|emb|CBI81531.1| DNA polymerase III epsilon chain [Bartonella schoenbuchensis R1] Length = 235 Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 104/236 (44%), Positives = 148/236 (62%), Gaps = 7/236 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD +DRIIEIG VE++D T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLDKDSDRIIEIGCVEMVDRYLTKRQFHVYLNPQGVIIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK++ F I EF +F + A +AHNA FD+ F+NAEL RINK + +IDT Sbjct: 61 NERLKNEKKFEDIADEFLEFID--GATMVAHNASFDISFLNAELGRINKPLISVDNVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+IAR+K P N L+ LCKR+GI S+R HGALLD+ +L+DVYI+ ++GG Q F Sbjct: 119 LAIARQKFPMGPNSLDVLCKRFGIDNSNRVLHGALLDAEILADVYIE-LIGGKQGVLSFD 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIWDRY 240 N D E + N+S + +P L +R++ +E D H ++ +G A+W+ + Sbjct: 178 NNSD--LDENIQNGKNVSHTVKTRPHALPSRLSTQEKDMHADLVKKIGDKALWNNF 231 >gi|307943432|ref|ZP_07658776.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4] gi|307773062|gb|EFO32279.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4] Length = 239 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 100/243 (41%), Positives = 150/243 (61%), Gaps = 11/243 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I FD ETTGL+ + DR++EIG VEL ++ T +++ V++ P R EA ++HG+ Sbjct: 1 MREISFDTETTGLNPRGGDRLVEIGGVELWNHIPTGKSYHVYINPQ-RDMPEEAFRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL DK F + EF DF +A + HNA FD+GFIN EL+R + + +++D Sbjct: 60 SEEFLSDKQLFDQVADEFLDFVG--DATLVIHNAAFDMGFINMELERSGRRIISNDQVLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP+ N L++LC RYGI S R KHGALLD+ +L++VY++ ++GG Q G Sbjct: 118 TLDLARRKHPTGPNSLDALCSRYGIDNSKRVKHGALLDAEILAEVYLE-LIGGRQTALGL 176 Query: 186 KTNEDR------FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 +ED E + N + +R PL I++ E H I+ +G+NAIW++ Sbjct: 177 TADEDAQTASSGGSAAEPGELGNFNAKQRPSPLTRPISEAEFAAHKAFIEGMGENAIWNK 236 Query: 240 YIS 242 Y S Sbjct: 237 YGS 239 >gi|319403493|emb|CBI77072.1| DNA polymerase III epsilon chain [Bartonella rochalimae ATCC BAA-1498] Length = 235 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 103/236 (43%), Positives = 150/236 (63%), Gaps = 6/236 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+ ++DRIIEIG +E+++ T R F V+L P E + +HG+T Sbjct: 1 MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQDVIIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LKD+ F I DF ++ A +AHNA FD+GF+NAEL+R+NK ++ +IDT Sbjct: 61 NERLKDEKKFDDIVDALLDFIDD--ATIVAHNANFDIGFLNAELERVNKPLINSDNVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LSIARR+ P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+ ++GG Q F F Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIE-LIGGKQGIFSFD 177 Query: 187 TNE--DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E D ++ K ++ R + L R++K+E D H I+ +G A+W+ + Sbjct: 178 NYESCDVMNVQDNKNAF-YTIKTRSQALPQRLSKQEKDMHADLIKKIGDKALWNHF 232 >gi|192288734|ref|YP_001989339.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris TIE-1] gi|192282483|gb|ACE98863.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris TIE-1] Length = 232 Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 103/241 (42%), Positives = 145/241 (60%), Gaps = 13/241 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T RT+ +L P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF +F +A + HNA FD+GFINAEL R+++ P+ R++D Sbjct: 60 SSEFLADKPLFAHVADEFLEFIG--DAPLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG--SQINF 183 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++G SQ+ Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 E E + +R PL R+T+ +L+ H I T+G+ AIW Y+ + Sbjct: 177 ADVPAEVVGAASENRR------RQRPAPLPNRLTEADLEAHRAFIATMGEKAIWPDYLPA 230 Query: 244 N 244 Sbjct: 231 G 231 >gi|118591451|ref|ZP_01548849.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM 12614] gi|118436123|gb|EAV42766.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM 12614] Length = 237 Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 100/239 (41%), Positives = 150/239 (62%), Gaps = 9/239 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I FD ETTGL+ + DR++EIG VEL+++ T +++ V++ P R EA ++HG+ Sbjct: 1 MREISFDTETTGLNPRGGDRLVEIGGVELINHVATGKSYHVYINPQ-RDMPEEAFRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F + EF +F +A + HNA FD+GFIN EL+R + + S+++D Sbjct: 60 SVEFLSDKPLFEHVADEFLEFVG--DATLVIHNAAFDMGFINMELERAGRRTIPNSQVLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHPS N L++LC RYGI S R KHGALLD+ +L++VY++ ++GG Q G Sbjct: 118 TLDLARRKHPSGPNSLDALCSRYGIDNSKRIKHGALLDAEILAEVYLE-LIGGRQTALGL 176 Query: 186 KTNEDRFFKE----EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 T+E+ E + + KR PL + + EL+ H I+ +G +AIW +Y Sbjct: 177 ITDEEESSSASASFEPGELGTFNARKRPTPLQRLLQESELEAHKAFIEGMGDSAIWSKY 235 >gi|217978678|ref|YP_002362825.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2] gi|217504054|gb|ACK51463.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2] Length = 235 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 103/240 (42%), Positives = 147/240 (61%), Gaps = 16/240 (6%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD K RI+EIGAVELL+ T ++F V++ P R EA ++HGI Sbjct: 1 MREIVLDTETTGLDPKQGHRIVEIGAVELLNSIPTGQSFHVYIHPE-RDMPDEAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL KP F+ I DF E A+ IAHNA+FD F+NAE R +PL R++D Sbjct: 60 SLEFLTGKPLFAEIVPALIDFLGE--AKIIAHNAEFDFRFLNAEFLRAEAEPLAWERVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INF 183 TL++ARR+ P + N L++LC R+G+ S R KHGALLD+ +L++VY + + GG Q + F Sbjct: 118 TLALARRRFPGASNSLDALCARFGVDTSRRVKHGALLDAEILAEVYAE-LCGGRQAALVF 176 Query: 184 GFKTNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G D +L++ R +PL +++ +E+ H + TLG+ AIW Y+S Sbjct: 177 GGGLGSD--------AATEAALMRERPEPLAPQLSPQEVAAHAAFVATLGEKAIWQAYLS 228 >gi|209883542|ref|YP_002287399.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans OM5] gi|209871738|gb|ACI91534.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans OM5] Length = 230 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 99/235 (42%), Positives = 144/235 (61%), Gaps = 10/235 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD+ + DR++EIG VE+ ++ T +T+ V++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDALRGDRLVEIGCVEMFNHMPTGQTYHVYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+++ EF +F +A I HNA FD+GFIN EL R+ + + R++D Sbjct: 60 STEFLADKPLFAAVADEFLEFIG--DAPLIIHNASFDIGFINMELDRLKRAAIPCERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++G Q + Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSSLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E + V ++ R+ PL +RIT EE + H + TLG + +W + Sbjct: 177 AETE-----RTQIHVVEVTRRVREVPLASRITVEEREAHRAFVATLGDHPLWAEF 226 >gi|39933378|ref|NP_945654.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris CGA009] gi|39653003|emb|CAE25745.1| putative DNA polymerase III epsilon chain [Rhodopseudomonas palustris CGA009] Length = 232 Score = 191 bits (486), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 103/241 (42%), Positives = 144/241 (59%), Gaps = 13/241 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T RT+ +L P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF +F +A + HNA FD+GFINAEL R+++ P+ R++D Sbjct: 60 SSEFLADKPLFAHVADEFLEFIG--DAPLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG--SQINF 183 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++G SQ+ Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 E E + +R PL R+T +L+ H I T+G+ AIW Y+ + Sbjct: 177 ADVPVEVAGAASESRR------RQRPAPLPNRLTDADLEAHRTFIATMGEKAIWPDYLPA 230 Query: 244 N 244 Sbjct: 231 G 231 >gi|83953070|ref|ZP_00961792.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1] gi|83842038|gb|EAP81206.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1] Length = 228 Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 98/232 (42%), Positives = 150/232 (64%), Gaps = 8/232 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D ++ DRI+EIGAVEL+ + T T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPE-RSMPAEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP F+ I +F DF +++ + HNA FD+ F+NAEL+ + + + +D Sbjct: 60 GDEFLRDKPKFAQIGQDFLDFIG--DSKLVIHNAAFDIKFLNAELKWMGLPQIPWEQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++ P S L++LC+R+GI + R+ HGALLDS +L+DVY++ ++GG Q +FG Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILADVYLE-LIGGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 T + K+E T P+ + R PL +RIT +E H + + LG +A+W Sbjct: 177 STKPE---KKEGDTTPDWTPKPRPTPLPSRITPQEAAAHTEFVDKLGDSAVW 225 >gi|218680719|ref|ZP_03528616.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 894] Length = 186 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 93/183 (50%), Positives = 122/183 (66%), Gaps = 7/183 (3%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGITDEFLKDK F+ + E FF +A+WIAHNA FD+GFINAEL RI P+ P Sbjct: 1 MHGITDEFLKDKKPFAEVAEEILAFFG--DAKWIAHNATFDMGFINAELARIGLPPILPE 58 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R++DTLS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+ M+GG Q Sbjct: 59 RVVDTLSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIE-MIGGRQA 117 Query: 182 NFGFKT----NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 FG T R E+ V S+L+R +PL R+++ E H+ + LG+ IW Sbjct: 118 AFGLSTATSGQNGRGDMAEEDDVVIASVLERPRPLAPRLSQSEAQAHEALVAKLGEKGIW 177 Query: 238 DRY 240 +Y Sbjct: 178 AKY 180 >gi|319780604|ref|YP_004140080.1| DNA polymerase III, subunit epsilon [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166492|gb|ADV10030.1| DNA polymerase III, epsilon subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 233 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 102/231 (44%), Positives = 146/231 (63%), Gaps = 4/231 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLDS++DR+IE+G VEL++ T RTF ++ P GR EA +HGI+ Sbjct: 1 MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHVEAQAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L KP+F+ I E+ DF + A+ +AHNA FDVGF+N E R+ +D ++DT Sbjct: 61 AADLAGKPTFAEIVQEWLDFTD--GAKLVAHNATFDVGFLNVEFGRLGHPVIDNGVVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYGI + R+KHGALLDS LL++VYI+ ++GG Q Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNTKRTKHGALLDSELLAEVYIE-LIGGKQAALILD 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + E + + I + R PL R+T+ E H + TLG+ A+W Sbjct: 178 SATAPAQGENVRQI-EIVVAPRPAPLPPRVTEAERAAHAGMVGTLGEKALW 227 >gi|316931718|ref|YP_004106700.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris DX-1] gi|315599432|gb|ADU41967.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris DX-1] Length = 232 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 102/241 (42%), Positives = 144/241 (59%), Gaps = 13/241 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T RT+ +L P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHRYLNPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF +F + + HNA FD+GFINAEL R+++ P+ R++D Sbjct: 60 SAEFLADKPLFAQVADEFLEFIGDD--PLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG--SQINF 183 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++G SQ+ Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 E E + +R PL R+T +L+ H I T+G+ AIW Y+++ Sbjct: 177 ADVPAEVVGAASENRR------RQRPAPLPNRLTDADLEAHRAFIATMGEKAIWPDYLAA 230 Query: 244 N 244 Sbjct: 231 G 231 >gi|83942021|ref|ZP_00954483.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36] gi|83847841|gb|EAP85716.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36] Length = 228 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 97/232 (41%), Positives = 150/232 (64%), Gaps = 8/232 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D ++ DRI+EIGAVEL+ + T T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPE-RSMPAEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I +F DF +++ + HNA FD+ F+NAEL+ + + + +D Sbjct: 60 GDDFLRDKPKFAQIGQDFLDFIG--DSKLVIHNAAFDIKFLNAELKWMGLPQIPWEQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++ P S L++LC+R+GI + R+ HGALLDS +L+DVY++ ++GG Q +FG Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILADVYLE-LIGGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 T + K+E T P+ + R PL +RIT +E H + + LG +A+W Sbjct: 177 STKPE---KKEGDTTPDWTPKPRPTPLPSRITPQEAAAHTEFVDKLGDSAVW 225 >gi|158421629|ref|YP_001522921.1| DNA polymerase III [Azorhizobium caulinodans ORS 571] gi|158328518|dbj|BAF86003.1| DNA polymerase III [Azorhizobium caulinodans ORS 571] Length = 240 Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 95/242 (39%), Positives = 145/242 (59%), Gaps = 18/242 (7%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ K DR++EIG VE+++ T TF V++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLEANKGDRVVEIGCVEMVNRILTGNTFHVYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + F +F + HNA FD+GF+NAEL R++++P+ R++D Sbjct: 60 SSEFLSDKPKFAEVADAFLEFIAGDT--LVIHNAAFDIGFLNAELARLSREPIARDRVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+++ARRKHP + L+ L KRYGI S R KHGALLDS LL++VY +++ G + G Sbjct: 118 TVALARRKHPGASAKLDDLMKRYGIDASRRVKHGALLDSELLAEVYSELLGGRQAMLVG- 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK------PLFTRITKEELDEHDKTIQTLGKNAIWDR 239 +E P + + PL +R++ EE+ H + I +G+ IW++ Sbjct: 177 -------LADETSEAPRLVVEVAVAARARPVPLPSRLSAEEIAAHREFIGGMGEKGIWNQ 229 Query: 240 YI 241 Y+ Sbjct: 230 YL 231 >gi|87119404|ref|ZP_01075302.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Marinomonas sp. MED121] gi|86165795|gb|EAQ67062.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Marinomonas sp. MED121] Length = 235 Score = 187 bits (476), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 145/234 (61%), Gaps = 13/234 (5%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTG+D K RIIEIG VE+LD T F V++ P+ R+ EA ++HGI Sbjct: 2 MRQIILDTETTGIDPKQGHRIIEIGCVEMLDRKLTKNHFHVYINPD-RQVEEEAFQVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRI 123 +DEFL DKP F + +F ++ Q AE + HNA FDVGFI+ E ++ P D + Sbjct: 61 SDEFLADKPRFHQVAQDFLNYI--QGAELVIHNAPFDVGFIDHEFAKLGNFPKVADICSV 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL+ AR KHP +N+L++LCKRYGI SHR HGALLDS +L+DVY+ +M GG Q + Sbjct: 119 FDTLAFARSKHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYL-LMTGG-QTSL 176 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTLGKNA 235 G +ED + +VP I L D+P+ + + ELD H++ + + K A Sbjct: 177 GLGDDED---GADGMSVPTIRRLSPDRPMIKVLKANQAELDLHNERLDLIEKQA 227 >gi|254502882|ref|ZP_05115033.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11] gi|222438953|gb|EEE45632.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11] Length = 239 Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 97/244 (39%), Positives = 146/244 (59%), Gaps = 13/244 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64 MR+I FD ETTGL+ + DR++EIG VEL+++ T + V++ P +++ PE A K+HG Sbjct: 1 MREISFDTETTGLNPRGGDRLVEIGGVELINHVPTGNAYHVYINP--QRDMPEGAFKVHG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +++EFL DKP F + EF +F + + HNA FD+GFIN EL+R + + +++I Sbjct: 59 LSEEFLSDKPLFEQVADEFLEFVG--DGTLVIHNAAFDMGFINMELERCGRRTISNTQVI 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL IARRKHPS N L++LC RYGI S R KHGALLD+ +L++VY++ M+GG Q Sbjct: 117 DTLEIARRKHPSGPNSLDALCSRYGIDNSKRVKHGALLDAEILAEVYLE-MIGGKQRALI 175 Query: 185 FKTNEDRFF------KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 +E+ E + + R PL + EE H + +G +A+W Sbjct: 176 LDPDEEDGLIGSGDAGSEPGELGSFKARPRPTPLSALLRGEEFAAHKAFVAGMGDSALWK 235 Query: 239 RYIS 242 +Y+ Sbjct: 236 KYVG 239 >gi|148251776|ref|YP_001236361.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. BTAi1] gi|146403949|gb|ABQ32455.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. BTAi1] Length = 232 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 98/239 (41%), Positives = 137/239 (57%), Gaps = 8/239 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD+ + DR++EIG VE+++ T + F ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F I EF +F +A + HNA FD+GFINAEL R+ + + R++D Sbjct: 60 SSEFLADKPLFHEIVEEFLEFIG--DAPLVIHNASFDIGFINAELDRVKRAAIPRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VY+ +VG Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVD-LVGARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 + P +R+ PL R+T E + H I TLG IW +++ Sbjct: 177 TQDTQEIRVGAAGDTPR---RQRETPLAARVTDAEREAHRAFIATLGDKPIWMEFLAGT 232 >gi|163850914|ref|YP_001638957.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens PA1] gi|163662519|gb|ABY29886.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens PA1] Length = 241 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/251 (39%), Positives = 149/251 (59%), Gaps = 22/251 (8%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + +R+IV D ETTG +++N DR+IEIG VEL+++ +T TF + P R S A Sbjct: 1 MESQKMLREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGI+D L DKP F+ + F +F +A + HNA FDVGF+N E R+ P Sbjct: 60 FAVHGISDAMLADKPVFAEVVDAFLEFCG--DARLVIHNAPFDVGFLNMEFARLG--PAA 115 Query: 120 PSRI-----IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P I +DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY+++ Sbjct: 116 PKAIALEDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVEL 175 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQT 230 + GG Q + G E +TV +L +P+ +R+T+ E HD +++ Sbjct: 176 L-GGKQTSLGLS------IAEPAETVALGALTDSGPVGPRPIRSRLTEGERLRHDSFVES 228 Query: 231 LGKNAIWDRYI 241 LG NA+W Y+ Sbjct: 229 LGTNAVWREYM 239 >gi|103488315|ref|YP_617876.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis RB2256] gi|98978392|gb|ABF54543.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis RB2256] Length = 231 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 102/240 (42%), Positives = 144/240 (60%), Gaps = 22/240 (9%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTG D +N DR++EIG VEL+D +T TF + P R A +HG+ Sbjct: 1 MREIIFDTETTGFDPRNGDRLVEIGCVELIDRRETGVTFHAYFNPE-RDMPAAAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F++ E DFF +A IAHNA FD GF+NAEL+RI + PLD +R+ Sbjct: 60 SSQFLSDKPLFAARVDELLDFFG--DAPLIAHNAAFDFGFVNAELERIGRPPLDMARMCC 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +AR+ HP +++ L++LC RYGI SHR KHGALLD+ LL+ +YI+ M GG QI G Sbjct: 118 TVQMARKLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAHLYIE-MTGGRQIGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLL--KRD------KPLFTRITKEELDEHDKTIQTLGKNAIW 237 ++ +P SLL +RD +P + EL H + + L + +W Sbjct: 177 ASS--------SAALPTASLLAARRDPARPFREPRPHMASAAELARHAEFVAGLNQ-PLW 227 >gi|91974903|ref|YP_567562.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB5] gi|91681359|gb|ABE37661.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB5] Length = 231 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/235 (42%), Positives = 136/235 (57%), Gaps = 9/235 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T + F ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQAFHRYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF DF +A + HNA FD GF+NAEL R+++ + R++D Sbjct: 60 SAEFLADKPLFAQVVDEFLDFIG--DAPLVIHNASFDAGFLNAELARLSRAAIPRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++G Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E + +R PL R+T+ +LD H I T+G AIW Y Sbjct: 177 A----EVPSERAGQGGDKPRRQRSTPLAARVTELDLDAHRAFIATMGDKAIWKEY 227 >gi|126730109|ref|ZP_01745921.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37] gi|126709489|gb|EBA08543.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37] Length = 229 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 102/234 (43%), Positives = 145/234 (61%), Gaps = 7/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL ++ T T+ ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGFEPEQGDRIVEIGAVELFNHVPTGETYHQYINPE-RSMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I EF F +++ + HNA FDV F+NAEL+ N+ L ID Sbjct: 60 GDDFLRDKPVFAKIVDEFRTFIG--DSKLVIHNAAFDVKFLNAELRWANRPTLAKDCAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARRK P S L++LC+R+GI S R+ HGALLDS +L++VY++ ++GG Q +FG Sbjct: 118 TLDIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLE-LIGGKQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + +TV N R PL +R+T E H ++ LG+NAIW+R Sbjct: 177 TSASNT--PSVGETVTNWRPKPRSTPLPSRLTDTEKAAHAAFVEKLGENAIWNR 228 >gi|218529738|ref|YP_002420554.1| DNA polymerase III subunit epsilon [Methylobacterium chloromethanicum CM4] gi|218522041|gb|ACK82626.1| DNA polymerase III, epsilon subunit [Methylobacterium chloromethanicum CM4] Length = 236 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 98/245 (40%), Positives = 148/245 (60%), Gaps = 22/245 (8%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+IV D ETTG +++N DR+IEIG VEL+++ +T TF + P R S A +HGI Sbjct: 2 LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123 +D L DKP F+ + F +F + +A + HNA FDVGF+N E R+ P P I Sbjct: 61 SDAMLADKPVFAEVVDAFLEFCS--DARLVIHNAPFDVGFLNMEFARLG--PAAPKAIAL 116 Query: 124 ---IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ GG Q Sbjct: 117 EDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQ 175 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQTLGKNAI 236 + G E +TV +L +P+ +R+T+ E HD +++LG NA+ Sbjct: 176 TSLGLS------IAEPAETVALGALTDSGPVGPRPIRSRLTEGERLRHDSFVESLGTNAV 229 Query: 237 WDRYI 241 W Y+ Sbjct: 230 WREYM 234 >gi|240138045|ref|YP_002962517.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] gi|240008014|gb|ACS39240.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] Length = 236 Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 98/245 (40%), Positives = 147/245 (60%), Gaps = 22/245 (8%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+IV D ETTG +++N DR+IEIG VEL+++ +T TF + P R S A +HGI Sbjct: 2 LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123 +D L DKP F+ + F +F +A + HNA FDVGF+N E R+ P P I Sbjct: 61 SDAMLADKPVFAEVVDAFLEFCG--DARLVIHNAPFDVGFLNMEFARLG--PAAPKAIAL 116 Query: 124 ---IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ GG Q Sbjct: 117 EDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQ 175 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQTLGKNAI 236 + G E +TV +L +P+ +R+T+ E HD +++LG NA+ Sbjct: 176 TSLGLS------IAEPAETVALGALTDSGPVGPRPIRSRLTEGERLRHDSFVESLGTNAV 229 Query: 237 WDRYI 241 W Y+ Sbjct: 230 WREYM 234 >gi|254560605|ref|YP_003067700.1| DNA polymerase III subunit epsilon [Methylobacterium extorquens DM4] gi|254267883|emb|CAX23749.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens DM4] Length = 236 Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 98/245 (40%), Positives = 147/245 (60%), Gaps = 22/245 (8%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+IV D ETTG +++N DR+IEIG VEL+++ +T TF + P R S A +HGI Sbjct: 2 LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123 +D L DKP F+ + F +F +A + HNA FDVGF+N E R+ P P I Sbjct: 61 SDAMLADKPVFAEVVDAFLEFCG--DARLVIHNAPFDVGFLNMEFARLG--PAAPKAIAL 116 Query: 124 ---IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ GG Q Sbjct: 117 EDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQ 175 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQTLGKNAI 236 + G E +TV +L +P+ +R+T+ E HD +++LG NA+ Sbjct: 176 TSLGLS------IAEPAETVTLGALTDSGPVGPRPMRSRLTEGERLRHDSFVESLGTNAV 229 Query: 237 WDRYI 241 W Y+ Sbjct: 230 WREYM 234 >gi|332306364|ref|YP_004434215.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173693|gb|AEE22947.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 235 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 103/241 (42%), Positives = 149/241 (61%), Gaps = 18/241 (7%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D + RIIEIG VEL++ T TF V++ P R EA+++HGI Sbjct: 1 MRQIVLDTETTGIDPRQGHRIIEIGCVELVNRRLTGNTFHVYINPQ-RLIEQEAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPS 121 T+E+L DKP F+ I ++F F N A+ + HNA FDVGF++ E R+ K D Sbjct: 60 TNEYLLDKPVFADIAADFAQFIN--GAQLVIHNAPFDVGFMDHEFDRVASMVGKKTADMC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR+ HP +N+L++LCKRYGI SHR HGALLDS +L+DVY+ M G + + Sbjct: 118 TVLDTLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTAL 177 Query: 182 NFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 N K+N D + E ++ P+++ LK R T +EL EH+K + + G + + Sbjct: 178 NLSGKSNSDGGSQVEPIRRLDPSLNQLK-----VLRATADELAEHEKRLDLVTKEGGSCL 232 Query: 237 W 237 W Sbjct: 233 W 233 >gi|299133202|ref|ZP_07026397.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2] gi|298593339|gb|EFI53539.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2] Length = 230 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 100/238 (42%), Positives = 144/238 (60%), Gaps = 16/238 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD+ + DR++EIG VE+ ++ T +T+ V++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDALRGDRLVEIGCVEMFNHMPTGQTYHVYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+++ +F F +A I HNA FD+GFIN EL+R+ + + R++D Sbjct: 60 SSEFLSDKPLFAAVAEDFLTFIG--DAPLIIHNASFDIGFINMELERVKRAAIPRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++G Q + Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSSL-- 174 Query: 186 KTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E + T V + R+ PL R+T EE++ H + TLG N IW + Sbjct: 175 ------ILAETRTTSIRVVEVERRVREVPLPPRMTPEEIEAHRAFVATLGDNPIWREF 226 >gi|85714087|ref|ZP_01045076.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A] gi|85699213|gb|EAQ37081.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A] Length = 230 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 140/237 (59%), Gaps = 9/237 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++E+G VE+ + T +TF ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPVRGDRLVELGCVEIFNRMPTGQTFHCYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF +F +A I HNA FD+ FINAEL+R+ + + R++D Sbjct: 60 SSEFLADKPLFAQVVDEFLEFIG--DAPLIIHNASFDISFINAELERLKRQVIGRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++G Q Sbjct: 118 TLLIARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 R + + +R PL +R+T+ + H + TLG+ AIW +++ Sbjct: 177 TETTSR----QLGGTLELPRRQRTVPLASRVTEADRIAHRNFVATLGEKAIWTEFLA 229 >gi|254472171|ref|ZP_05085571.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062] gi|211958454|gb|EEA93654.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062] Length = 236 Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 99/241 (41%), Positives = 148/241 (61%), Gaps = 12/241 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I FD ETTGL+ DR++EIG VEL+++ T RT +++ P R EA ++HG+ Sbjct: 1 MREISFDTETTGLNPLDGDRLVEIGGVELINFIPTGRTCHLYVNPQ-RDMPEEAFRIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF DF + A + HNA FD+GFIN EL R NK + ++++D Sbjct: 60 SAEFLSDKPVFADVADEFLDFVGD--ARLVIHNAPFDMGFINMELARCNKPKISNTQVLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRK P+ L++LC RYGI S R HGALLD+ LL++VY++M GG Q N G Sbjct: 118 TLKLARRKFPTGSVSLDALCSRYGIDNSKRVYHGALLDAELLAEVYLEMN-GGKQKNLGL 176 Query: 186 KTNE-----DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++ D ++ K I+ +R PL +++EE++ H K I + + W++Y Sbjct: 177 MPDDEAIDLDNIGDDQPKQ--RIAAKQRPVPLSPALSEEEIEAHAKFIAGMKTDPAWNKY 234 Query: 241 I 241 + Sbjct: 235 L 235 >gi|21328725|gb|AAM48731.1| DNA polymerase III, epsilon subunit [uncultured marine proteobacterium] Length = 231 Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 101/235 (42%), Positives = 151/235 (64%), Gaps = 8/235 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHG 64 MR+IV D ETTG + S+ DRI+EIGAVEL ++ T RT+ ++ P +N PEA +HG Sbjct: 1 MREIVLDTETTGFEPSEGDRIVEIGAVELFNHLPTGRTYHQYINP--ERNMPEAAFNVHG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +++EFL DKP F +I EF DF +++ + HNA FD+ F+NAEL +N+ L + I Sbjct: 59 LSEEFLSDKPIFKNIAQEFIDFI--ADSKLVIHNASFDMKFLNAELGWVNRPALPNDQTI 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL+IARRK P S L++LC+R+GI S R+ HGALLDS +L++VY++ +VGG Q + Sbjct: 117 DTLAIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLE-LVGGRQPDLV 175 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 E + + ++ P+ R KPL +R++ +E H+ I LG +A+W + Sbjct: 176 LSGPEVKTSTDGSQS-PDWRPAPRPKPLASRLSDKEKAAHETFIAALGSDALWTK 229 >gi|254707409|ref|ZP_05169237.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M163/99/10] gi|261314895|ref|ZP_05954092.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M163/99/10] gi|261303921|gb|EEY07418.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M163/99/10] Length = 201 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 89/205 (43%), Positives = 129/205 (62%), Gaps = 6/205 (2%) Query: 40 TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 T RTF F+ P GR+ P+AL +HGI++E L DKP F+ I EF +F + A +AHNA Sbjct: 1 TGRTFHKFINPQGRQVHPDALAVHGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNA 58 Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 FD+GFINAEL R+++ + I+DTL++ARRKHP N L++LCKRYGI SHR+ HG Sbjct: 59 MFDLGFINAELARLDQAEITSEHIVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHG 118 Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEK--KTVPNISLLKRDKPLFTRIT 217 ALLD+ +L++VYI+ ++GG Q G + + + P + L R +PL RI+ Sbjct: 119 ALLDAQILAEVYIE-LIGGKQTALGLTMESGSAGGDSRGNGSAP-VVLAARPRPLPPRIS 176 Query: 218 KEELDEHDKTIQTLGKNAIWDRYIS 242 E H ++ +G A+W +Y+S Sbjct: 177 DAERAAHAALVEKMGDKAVWKKYLS 201 >gi|146337369|ref|YP_001202417.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. ORS278] gi|146190175|emb|CAL74167.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Bradyrhizobium sp. ORS278] Length = 232 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 96/238 (40%), Positives = 137/238 (57%), Gaps = 8/238 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD+ + DR++EIG VE+++ T + F ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPQ-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F + +F F +A + HNA FD+GFINAEL R+ + + R++D Sbjct: 60 STEFLSDKPLFHEVVEDFLAFIG--DAPLVIHNASFDIGFINAELDRVKRAAIPRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VY+ +VG Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVD-LVGARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 + P +RD PL R+T+ E + H + TLG IW +++ Sbjct: 177 TQDAQEIRIGNAGDTPR---RQRDVPLAPRVTEAEREAHRAFVATLGDKPIWMDFLTG 231 >gi|255264769|ref|ZP_05344111.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62] gi|255107104|gb|EET49778.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62] Length = 231 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/237 (42%), Positives = 149/237 (62%), Gaps = 12/237 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + ++ DRI+EIGAVELL++ T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPNEGDRIVEIGAVELLNHVPTGRTYHQYINPK-RSMPKEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I F DF + I HNA FD+ F+NAEL +N+ L + +D Sbjct: 60 GDDFLRDKPFFADIAQAFVDFVGTD--KMIIHNAAFDMKFLNAELGWVNRPLLPMDQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARR+ P S L++LC+R+GI S R+ HGALLDS +L++VY++ ++GG Q +FG Sbjct: 118 TLAIARRRFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLE-LIGGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNIS---LLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 T KEEKK V + + R PL + +++EE H + LG + +W + Sbjct: 177 NTAP----KEEKKFVTSTTDNRPKSRSTPLVSLLSEEEATAHSAFVDKLGDDVLWKK 229 >gi|188580742|ref|YP_001924187.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001] gi|179344240|gb|ACB79652.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001] Length = 236 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 96/241 (39%), Positives = 144/241 (59%), Gaps = 14/241 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+IV D ETTG D+KN DR+IEIG VEL+++ +T + + + P R S A +HGI Sbjct: 2 LREIVLDTETTGTDAKNGDRLIEIGCVELINHVQTGKFYHQLINPQ-RAVSEGAFAVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123 +D L DKP F+ + F F +A + HNA FDVGF+N E R+ P P I Sbjct: 61 SDAMLADKPVFADVVDAFVAFCG--DARLVIHNAPFDVGFLNMEFARLG--PAAPKAIPL 116 Query: 124 ---IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ GG Q Sbjct: 117 EDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQ 175 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + G E + + + R P+ +R+T+ E HD +++LG NA+W Y Sbjct: 176 TSLGLSIAEPTEAIAIESATDSGPVGPR--PMRSRLTESERLRHDSFVESLGTNAVWREY 233 Query: 241 I 241 + Sbjct: 234 L 234 >gi|109898679|ref|YP_661934.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] gi|109700960|gb|ABG40880.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] Length = 235 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 102/241 (42%), Positives = 148/241 (61%), Gaps = 18/241 (7%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D + RIIEIG VELL+ T TF V++ P R EA+++HGI Sbjct: 1 MRQIVLDTETTGIDPRQGHRIIEIGCVELLNRRLTGNTFHVYVNPQ-RLIEQEAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPS 121 T+E+L DKP F+ + ++F F + A+ + HNA FDVGF++ E R+ K D Sbjct: 60 TNEYLLDKPLFADVAADFVKFIS--GAQLVIHNAPFDVGFMDHEFARVAAMAGKKTSDMC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR+ HP +N+L++LCKRYGI SHR HGALLDS +L+DVY+ M G + + Sbjct: 118 TVLDTLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTDL 177 Query: 182 NFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 N K+N D + E ++ P ++ LK R T +EL EH+K + + G + + Sbjct: 178 NLSGKSNSDGGSQVERIRRLDPQLNQLK-----VLRATADELVEHEKRLDLVNKEGGSCL 232 Query: 237 W 237 W Sbjct: 233 W 233 >gi|90421821|ref|YP_530191.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB18] gi|90103835|gb|ABD85872.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB18] Length = 231 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 98/239 (41%), Positives = 139/239 (58%), Gaps = 17/239 (7%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T +TF ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL KP F+ + EF +F E A + HNA FD+GFINAEL +I + P+ R++D Sbjct: 60 SAEFLSTKPLFAEVVDEFLEFIAE--APLVIHNASFDIGFINAELGKIARPPIPRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-- 183 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++G Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176 Query: 184 --GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + +R ++ +R+ PL R+T + H + + TLG IW+ Y Sbjct: 177 AEAAPSRSNRPGDAPRR--------QRETPLAARVTDADRIAHREFVATLGDKPIWNEY 227 >gi|27375751|ref|NP_767280.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] gi|27348889|dbj|BAC45905.1| DNA polymerase III epsilon chain [Bradyrhizobium japonicum USDA 110] Length = 239 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 96/238 (40%), Positives = 136/238 (57%), Gaps = 8/238 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T +T+ V++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEMFNRMPTGQTYHVYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL KP F + F +F +A + HNA FD+ FINAEL RI + + +++D Sbjct: 60 SAEFLSTKPVFHEVADAFLEFIG--DAPLVIHNASFDISFINAELDRIKRAAIPREQLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VY+ +VG Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVD-LVGARQSQLLL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 + + P +R PL RI+ E + H I TLG AIW+ ++ + Sbjct: 177 ASEAEEIRINAAGDTPR---RQRPTPLAPRISDAEREAHRAFIATLGDKAIWNEFLPA 231 >gi|115522405|ref|YP_779316.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisA53] gi|115516352|gb|ABJ04336.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisA53] Length = 229 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 93/236 (39%), Positives = 136/236 (57%), Gaps = 9/236 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+L+ T + + ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEILNRMPTGQIYHCYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL KP F+ + EF F +A + HNA FD+GFINAEL R+++ P+ R++D Sbjct: 60 SAEFLSTKPLFAEVAEEFLAFI--ADAPLVIHNASFDIGFINAELARLSQPPIPRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VY+ ++G Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVD-LIGARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 E + +R+ L R++ + + H + TLG IW+ Y+ Sbjct: 177 AETG----SERASRAADAPRRQRETALVARVSDADREAHRAFVATLGDKPIWNEYL 228 >gi|84514924|ref|ZP_01002287.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Loktanella vestfoldensis SKA53] gi|84511083|gb|EAQ07537.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Loktanella vestfoldensis SKA53] Length = 228 Score = 181 bits (460), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 97/234 (41%), Positives = 140/234 (59%), Gaps = 8/234 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + S+ DRI+EIGAVEL+ + T RT+ ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGFEPSEGDRIVEIGAVELIGHMPTGRTYHQYINPQ-RTMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL DKP F I +F F +A+ + HNA FD+ F+NAEL ++K L +R +D Sbjct: 60 GDDFLADKPLFKDIADDFLTFIG--DAKLVIHNAAFDMKFLNAELGWLHKPALPMNRAVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARRK P S L++LC+R+GI + R+ HGALLDS +L++VY++ ++GG Q +F Sbjct: 118 TLMIARRKFPGSPASLDALCRRFGIDNAARTLHGALLDSEILAEVYLE-LIGGRQPDFAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 +K R PL +R+T EE H + +G +A+W R Sbjct: 177 AQGSA---DSTQKNGAAWRAGPRPAPLASRLTAEETAAHTAFVNAMGDDAVWKR 227 >gi|255019824|ref|ZP_05291900.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] gi|254970753|gb|EET28239.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] Length = 243 Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 99/248 (39%), Positives = 144/248 (58%), Gaps = 31/248 (12%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG+D + R+IEIGAVEL+D T +Q +L P GR + PEAL++HGI Sbjct: 1 MRQVVLDTETTGIDPRQGHRVIEIGAVELVDREITEGRYQQYLNP-GRSSDPEALRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRII 124 D+FL D+P F+ I +F F +AE I HNA FD+ F+NAEL+R+ + L +P R Sbjct: 60 RDDFLADQPDFADIVEDFLAFLG--DAELIIHNAPFDLAFLNAELERVGRPALQNPVR-- 115 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL ARR+HP +NDL++LC+RYG+ S R +HGALLD +L++VY++M G G Sbjct: 116 DTLVEARRRHPGQKNDLDALCRRYGVDNSRRQQHGALLDCEILAEVYLRMSGG----QLG 171 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK---------------EELDEHDKTIQ 229 + DR + P+++ + F + EL H+ ++ Sbjct: 172 MRLAADR-----EAQGPSVAEEGQAGAPFQAHAQAADRRRPLRLRRADAAELAAHEAYLR 226 Query: 230 TLGKNAIW 237 LG A+W Sbjct: 227 GLGGKALW 234 >gi|332186931|ref|ZP_08388672.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17] gi|332012941|gb|EGI55005.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17] Length = 232 Score = 181 bits (458), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 101/233 (43%), Positives = 141/233 (60%), Gaps = 9/233 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTG S+ DR++EIG VEL++ +T RT+ + P R EA +HG+ Sbjct: 1 MREIVFDTETTGFKFSEGDRLVEIGCVELVNRVETGRTYHAYFNPE-RSMPAEAQAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRII 124 +D FLKDKP F+ +EF DF +A IAHNA FD GFIN EL + + +R++ Sbjct: 60 SDAFLKDKPVFAEGVAEFLDFIG--DAPLIAHNATFDFGFINGELGALGFPHVCEKTRMV 117 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL+IAR KHP +++ L++LC RYGI SHR HGALLD+ LL+ VY+++M GG QI G Sbjct: 118 DTLAIARSKHPGAKHTLDALCSRYGIDRSHRVLHGALLDAQLLAQVYVELM-GGRQIGLG 176 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + D + TV + R +F R + EL H ++ + + IW Sbjct: 177 LLAD-DAGQGTQTITVTRAPAIVRPPRVF-RPSDAELAAHAAFLKGI-ADPIW 226 >gi|75674304|ref|YP_316725.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi Nb-255] gi|74419174|gb|ABA03373.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi Nb-255] Length = 239 Score = 181 bits (458), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 96/239 (40%), Positives = 140/239 (58%), Gaps = 9/239 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T +TF ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEMFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F+ + EF +F +A + HNA FD+ FINAEL R+ + + R++D Sbjct: 60 SSDFLADKPLFAHVVDEFLEFIG--DAPLVIHNASFDISFINAELDRLKRQAIGRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++G Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 R ++ + +R PL +R+T + H + I TLG+ AIW ++ + Sbjct: 177 VETAPR----QRGGSLEMPRRQRTVPLASRVTAADRIAHREFIATLGEKAIWMEFLEQD 231 >gi|170750672|ref|YP_001756932.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans JCM 2831] gi|170657194|gb|ACB26249.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans JCM 2831] Length = 240 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 99/248 (39%), Positives = 141/248 (56%), Gaps = 22/248 (8%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+IV D ETTG ++K DR+IEIGAVELL++ T RTF + P R S A +HG+ Sbjct: 2 LREIVLDTETTGTEAKGGDRLIEIGAVELLNHIPTGRTFHRYCNPQ-RPVSEGAFNVHGL 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 +D FL DKP F+ I E F + + HNA FDVGF+N E R+ + P+ Sbjct: 61 SDAFLADKPVFAEIVGELLAFL--ADGRLVIHNAPFDVGFLNMEYARLGANAPPPIQLED 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +ARRKHP + N+L++LC RYGI + R+KHGALLD+ +L++VY++++ GG Q + Sbjct: 119 VVDTLPMARRKHPGAANNLDALCARYGIDNTRRTKHGALLDAQILAEVYVELL-GGKQTS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLF------TRITKEELDEHDKTIQTLGKNAI 236 G E +K P +R+T E HD +LG AI Sbjct: 178 LG--------LLEAEKAAPAAGSTALAAAPAAPRPYRSRLTDAERARHDSFRASLGPAAI 229 Query: 237 WDRYISSN 244 W YI ++ Sbjct: 230 WADYIGAD 237 >gi|154251704|ref|YP_001412528.1| DNA polymerase III subunit epsilon [Parvibaculum lavamentivorans DS-1] gi|154155654|gb|ABS62871.1| DNA polymerase III, epsilon subunit [Parvibaculum lavamentivorans DS-1] Length = 228 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 98/234 (41%), Positives = 142/234 (60%), Gaps = 15/234 (6%) Query: 7 MRKIVFDIETTGLDSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLH 63 MR+IV D ETTG+ S ND R++EIG +EL ++ T + F ++ P ++ PE A ++H Sbjct: 1 MREIVLDTETTGI-SPNDGHRLVEIGCLELFNHVVTGKYFHAYIDPE--RDMPEGAFRIH 57 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 G++ +FL+ KP F+ + +F F E + HNA FD+GFINAEL+RI + L SR Sbjct: 58 GLSSDFLRGKPKFAEVADDFLAFIGED--PLVIHNAAFDMGFINAELKRIGRPALPVSRA 115 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL IARRK P ++N L++LC+R+G+ S R+KHGALLDS LL++VY+++M GG Q Sbjct: 116 TDTLDIARRKFPGAQNSLDALCRRFGVDNSGRTKHGALLDSELLAEVYLELM-GGRQPGL 174 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + + E P RD L R+T+ E HD + TLG +W Sbjct: 175 VLQADYAGMKGERVTRAP------RDIALPPRLTEAEKAAHDAFVATLGGEPLW 222 >gi|86747524|ref|YP_484020.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris HaA2] gi|86570552|gb|ABD05109.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris HaA2] Length = 231 Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 95/238 (39%), Positives = 136/238 (57%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T + + ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQVYHQYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + F DF +A + HNA FD+GFINAEL R+++ + R++D Sbjct: 60 SSEFLADKPVFAQVADAFIDFIG--DAPLVIHNASFDIGFINAELARLSRAAIPRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++G Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 E + +R L R+T +L+ H I +G AIW+ Y ++ Sbjct: 177 A----EVPSERSGAGGDTPRRQRSIALTPRVTDADLEAHRAFIALMGDKAIWNEYTAA 230 >gi|90416118|ref|ZP_01224051.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] gi|90332492|gb|EAS47689.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] Length = 239 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 98/240 (40%), Positives = 147/240 (61%), Gaps = 15/240 (6%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ D RIIEIG VEL+ T R + ++ P RK A+++HGI Sbjct: 1 MRQIVLDTETTGLETSQDHRIIEIGCVELVGRKLTGRHYHQYVNPQ-RKVDVGAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 TD+FL+DKP F ++ EF +F + A+ + HNA FDVGFIN E+ ++N + R Sbjct: 60 TDQFLEDKPLFETVAREFLEFVD--GADLVIHNAPFDVGFINHEIAKLNGAYQAIESGCR 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IIDTL++AR+KHP +N+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G +N Sbjct: 118 IIDTLALARQKHPGQKNNLDALCKRYGVDNSQRDLHGALLDAEILADVYLLMTGGQVNLN 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT--KEELDEHDKTIQTLGK---NAIW 237 + D + + I L +D+ +T +EE++ H + ++ + K N +W Sbjct: 178 ISGQQASD---GGQDNSRSGIRRLAQDRQPLRVVTASREEIERHQQKLEAINKSSGNCLW 234 >gi|294009991|ref|YP_003543451.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S] gi|292673321|dbj|BAI94839.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S] Length = 230 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 99/239 (41%), Positives = 142/239 (59%), Gaps = 21/239 (8%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTG D + DR++EIG +ELL+ T RTF + P R A +HG+ Sbjct: 1 MREIIFDTETTGFDPASGDRLVEIGCIELLNRVPTGRTFHAYYNPQ-RSMPAAAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D FL+DKP FS E F +++ +AHNA+FD GF+N EL+ + +R+ID Sbjct: 60 SDSFLRDKPLFSHGVEELLAFL--EDSHLVAHNARFDFGFLNHELRLCGLPEVSMARMID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IAR+ HP +++ L++LC RYGI SHR KHGALLD+ LL+ +YI+ + GG QI G Sbjct: 118 TVAIARQLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIE-LTGGRQIGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLK-------RDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 +EE+K V N+ L R +F + EEL+ H + TL K +W Sbjct: 177 A-------QEEEKRVANMELAAEVAVRPVRPARVFA-ASAEELERHAAFVATLEK-PLW 226 >gi|254485580|ref|ZP_05098785.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101] gi|214042449|gb|EEB83087.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101] Length = 228 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 93/232 (40%), Positives = 148/232 (63%), Gaps = 8/232 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D ++ DRI+EIGAVEL+ + T +T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMGHMATGKTYHQYINPE-RGMPDEAFQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I +F DF +++ I HNA FD+ F+NAEL+ + + ++ +D Sbjct: 60 GDDFLRDKPKFAQIGQDFLDFIG--DSKLIIHNAAFDIKFLNAELKWMGLPQIPWAQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++ P S L++LC+R+ I + R+ HGALLDS +L++VY++ ++GG Q +FG Sbjct: 118 TLAIARKRFPGSPASLDALCRRFNIDNTSRTLHGALLDSEILAEVYLE-LIGGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 R +E T + + R PL +RI+++E H + + LG A+W Sbjct: 177 SNQPQR---KEGDTSVDWTPKPRPNPLPSRISQDEAAAHAEFVSKLGDGAVW 225 >gi|315497200|ref|YP_004086004.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB 48] gi|315415212|gb|ADU11853.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB 48] Length = 232 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 97/233 (41%), Positives = 140/233 (60%), Gaps = 8/233 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D K R+IE+G +E+ D T +TF + P R P+A+++HGI Sbjct: 1 MRQIVLDTETTGIDPKKGHRLIEVGCIEIEDLLPTGKTFHHYFNPE-RLIEPDAIRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE + DKP F+ + F DF +A IAHNA FD GFIN EL+R+ DP DP R +D Sbjct: 60 TDEMVADKPKFADLAQAFIDFVG--DAPIIAHNASFDRGFINMELERLGLDPTDPDRWVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR K P N L++LCKRY I+++ R KHGALLD+ LL+ VY++ + GG + Sbjct: 118 TLELARYKFPGMANSLDALCKRYNISLAERDKHGALLDARLLAGVYLE-LSGGKERGLDL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK-TIQTLGKNAIW 237 K + E+ + ++ +R +PL + I EE + H ++ L +W Sbjct: 177 KMH--GMVSEDGTEIRVMNHGQRPRPLPSHIHPEEAEAHKAFCLKYLKDQNMW 227 >gi|92115747|ref|YP_575476.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14] gi|91798641|gb|ABE61016.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14] Length = 239 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 97/240 (40%), Positives = 139/240 (57%), Gaps = 13/240 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV DIETTGLD + DR++EIG VE+ + T +TF ++ P R EA +HG+ Sbjct: 1 MREIVLDIETTGLDPLRGDRVVEIGCVEIFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL +KP F+ I +F +F +A + HNA FD+ FINAEL R+ + R++D Sbjct: 60 SSEFLAEKPLFTHIVDDFLEFIG--DAPLVIHNASFDISFINAELDRLKMRTIGRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++G Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYID-LIGARQPQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 R +T + + +R + PL R+T + H + TLG+ AIW + + Sbjct: 177 AETASR------RTGGTLDMPRRQRTVPLAPRVTDADRIAHRDFVATLGEKAIWKEFAGT 230 >gi|33591629|ref|NP_879273.1| DNA polymerase III subunit epsilon [Bordetella pertussis Tohama I] gi|33598340|ref|NP_885983.1| DNA polymerase III subunit epsilon [Bordetella parapertussis 12822] gi|33603250|ref|NP_890810.1| DNA polymerase III subunit epsilon [Bordetella bronchiseptica RB50] gi|33566898|emb|CAE39114.1| DNA polymerase III, epsilon chain [Bordetella parapertussis] gi|33571272|emb|CAE44737.1| DNA polymerase III, epsilon chain [Bordetella pertussis Tohama I] gi|33577374|emb|CAE34639.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica RB50] gi|332381049|gb|AEE65896.1| DNA polymerase III subunit epsilon [Bordetella pertussis CS] Length = 244 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 102/232 (43%), Positives = 141/232 (60%), Gaps = 15/232 (6%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD ++ RI+EIG VE+++ T ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ + +F F +AE IAHNA FDV F NAELQRI +DPL+ I Sbjct: 60 TTEFLADKPRFAEVAEQFLAFI--ADAELIAHNAAFDVKFFNAELQRIGRDPLNTHCENI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +D+L AR HP RN L++LC RYGI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 118 VDSLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDKTIQTLGK 233 +D+ V L K D + T + ++ EL EH +Q L K Sbjct: 178 DV---DDQGANANGALV----LGKFDASVLTVLAASEAELAEHAAYLQALDK 222 >gi|310817168|ref|YP_003965132.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare Y25] gi|308755903|gb|ADO43832.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare Y25] Length = 224 Score = 178 bits (451), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 95/229 (41%), Positives = 142/229 (62%), Gaps = 8/229 (3%) Query: 12 FDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDEF 69 D ETTG + + DRI+EIG VELL++ T RT+ ++ P +++ PE A K+HG++ EF Sbjct: 1 MDTETTGFEPETGDRIVEIGCVELLNHLPTGRTYHQYINP--QRDMPEDAFKVHGLSAEF 58 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L DKP F+ + +F DF + N + HNA FDV F+NAEL + K + P+R +DTL I Sbjct: 59 LSDKPLFAQVAQDFLDFIGDAN--LVIHNAAFDVKFLNAELGWVKKPLIAPARAVDTLLI 116 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 ARR+ P ++N L++LC+R+GI S R+ HGALLDS +L++VY++ ++GG Q +FG Sbjct: 117 ARRRFPGAQNSLDALCRRFGIDNSKRTLHGALLDSEILAEVYLE-LIGGRQPDFGLSAAA 175 Query: 190 DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + T R PL TR+T++E H ++ LG A W+ Sbjct: 176 ST-PAQGNVTRSAWRPQPRPNPLPTRLTEDEAKAHAAFVEKLGPEAAWN 223 >gi|85709813|ref|ZP_01040878.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1] gi|85688523|gb|EAQ28527.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1] Length = 234 Score = 178 bits (451), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 98/240 (40%), Positives = 145/240 (60%), Gaps = 13/240 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++FD ETTGLD K DR++EIG VE++ +T R++ + P R A +HG+ Sbjct: 1 MREVIFDTETTGLDPKTGDRMVEIGCVEMVGRVETGRSYHAYYNPE-RDMPSAAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL+ KP FS E +F +A +AHNA FD GF+NAEL+RI ++ + R++D Sbjct: 60 SISFLETKPRFSETADELLEFLG--DAPLVAHNAGFDFGFLNAELERIGRESIAMDRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IAR+KHP ++ L++LC RYGI SHR KHGALLD+ LL+ VY++ + GG QI Sbjct: 118 TVAIARKKHPGAKLSLDALCTRYGIDRSHRVKHGALLDAELLAQVYVE-LTGGRQIGLEL 176 Query: 186 K--TNEDRFFKEEKKTVPNISLLKRDKPLFT----RITKEELDEHDKTIQTLGKNAIWDR 239 T ED E K V + + D+P ++ EL H + ++ + K+AIW R Sbjct: 177 AADTVEDPHAAAE-KVVETVIGRRSDQPFREPRPHAASENELARHREFVEGI-KDAIWAR 234 >gi|126667360|ref|ZP_01738332.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] gi|126628116|gb|EAZ98741.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] Length = 236 Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 86/175 (49%), Positives = 127/175 (72%), Gaps = 7/175 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D ++ RIIEIG VEL++ + T R + V++ P GR+ EA+ +HGI Sbjct: 1 MRQIVLDTETTGIDPNEGHRIIEIGCVELVERTLTGRNYHVYVNP-GREVEAEAVAIHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123 T+EFL DKP F+ + EF++F + AE + HNA FDVGF++AE R++ + + I Sbjct: 60 TNEFLADKPLFAVVADEFFEFI--RGAELVIHNAAFDVGFMDAEFGRLDGGRKTAEHCGI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +DTL+IAR++HP +N+LN+LCKRYG+ S+R HGALLD+ +L+DVY+ ++ GG Sbjct: 118 VDTLAIARKRHPGQKNNLNALCKRYGVDNSNRELHGALLDAEILADVYL-LLTGG 171 >gi|254448791|ref|ZP_05062248.1| DNA polymerase III, epsilon subunit [gamma proteobacterium HTCC5015] gi|198261632|gb|EDY85920.1| DNA polymerase III, epsilon subunit [gamma proteobacterium HTCC5015] Length = 239 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 105/244 (43%), Positives = 150/244 (61%), Gaps = 19/244 (7%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGLD K RIIEIG VEL + T ++L P+ R+ A+++H I Sbjct: 1 MRQVVLDTETTGLDPKQGHRIIEIGCVELENRRLTGNKLHMYLQPD-REIDDGAIEVHQI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T+EFL DKP F + EF DF + +E + HNA FDVGFI++EL ++++ D Sbjct: 60 TNEFLADKPRFGDVVDEFLDFV--KGSELVIHNAAFDVGFIDSELNLLDRNLGQTKDYCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL++AR+ HP RNDL+SLCKRY I SHR+ HGALLD+ +L+DVY+ MM GG Q++ Sbjct: 118 VLDTLAMARKMHPGKRNDLDSLCKRYDINNSHRTLHGALLDAEILADVYL-MMTGG-QVS 175 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK--EELDEHDKTIQTL-GKNA---- 235 GF + + E+ IS +D+ IT EE + H+K + L GK+ Sbjct: 176 LGFDAKQKQEADAEQGGAHRIS---QDRAPLQVITASPEEQERHEKLLANLRGKDGDQPC 232 Query: 236 IWDR 239 +WD+ Sbjct: 233 LWDQ 236 >gi|312115401|ref|YP_004012997.1| DNA polymerase III subunit epsilon [Rhodomicrobium vannielii ATCC 17100] gi|311220530|gb|ADP71898.1| DNA polymerase III, epsilon subunit [Rhodomicrobium vannielii ATCC 17100] Length = 241 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 104/238 (43%), Positives = 144/238 (60%), Gaps = 14/238 (5%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGLD K+ RIIE+ VEL +Y T + + P R EA +HG+ Sbjct: 1 MRELVLDTETTGLDPKSGHRIIELACVELHNYIPTGVFWHWYFNPE-RSVPREATAIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRII 124 TD FL DKP F +I + + A I HNA FDVGF+N E Q++ + P+ R+ Sbjct: 60 TDGFLADKPLFGAIAPDIVKVL--EGARLIIHNASFDVGFLNFEFQKLGYQQPISMERVT 117 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--IN 182 DTL++ARRKHP S N+L++LC+RYGI S R+KHGALLDS LL+DVY++ ++G Q ++ Sbjct: 118 DTLALARRKHPGSPNNLDALCRRYGIDNSTRTKHGALLDSELLADVYLR-LIGAEQAGLD 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 G ++ E + ++ R KPL +R+T EE H + TLG AIW RY Sbjct: 177 LGARSAEVTVAGQAA------AVQVRLKPLPSRLTAEEAAAHAAFVATLGDKAIWKRY 228 >gi|307824649|ref|ZP_07654873.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum SV96] gi|307734303|gb|EFO05156.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum SV96] Length = 241 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 101/241 (41%), Positives = 143/241 (59%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTGL+ + RIIEIG VEL++ T + F ++ P R A+++HGIT Sbjct: 9 RLVVLDTETTGLNPQEGHRIIEIGCVELVNRRLTGKRFHTYINPE-RIIDDGAIEVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRI 123 ++FL+DKP F+ + +F F Q+AE + HNA FDVGFIN E R+N D S++ Sbjct: 68 NQFLEDKPCFADVVKDFIAFI--QDAELVIHNAPFDVGFINYEFSRLNSQTGTVTDYSKV 125 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL+ AR+KHP RN L++LCKRYGI SHR HGALLD+ +L+DV++ M G S + Sbjct: 126 FDTLTYARKKHPGQRNSLDALCKRYGIDNSHRDLHGALLDAEILADVFLLMTGGQSSL-- 183 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDK---TIQTLGKNAIWD 238 +E + +E I L D+P R T+EEL+ H + I+ G IW+ Sbjct: 184 ---LDEGQGRQEGAAVNREIKHLSADRPALKIIRCTEEELNAHQQRLEAIEKAGGGCIWN 240 Query: 239 R 239 + Sbjct: 241 Q 241 >gi|161170263|gb|ABX59233.1| polymerase III epsilon subunit uncultured proteobacterium [uncultured marine bacterium EB000_55B11] gi|297183792|gb|ADI19915.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 230 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 148/234 (63%), Gaps = 7/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV+D ETTG D DRI+EIGAVEL + T R + ++ P R P A ++HG+ Sbjct: 1 MREIVWDTETTGFDPFAGDRIVEIGAVELNQHLPTGRVYHQYINPE-RDMPPGAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FLKD P FS+I +F DF + A IAHNAKFD+ FINAEL+ N + ++ +D Sbjct: 60 SIDFLKDFPVFSNIARDFIDFVGD--ATLIAHNAKFDMKFINAELKNANLPQVPLNQSLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR+K P ++N L++LC+R+ I S R KHGALLDS +L++VY++ +VGG Q +F Sbjct: 118 TLEIARKKFPGAQNSLDALCRRFNIDNSSRQKHGALLDSEILAEVYLE-LVGGRQPDFSL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 K E + + + L R K L + +T E H+ I++LG +A+W++ Sbjct: 177 SLVGQS--KLESTSDSSYAALSRPKKLNSLVTDVEKKAHNDFIKSLGTSAVWNK 228 >gi|83645320|ref|YP_433755.1| DNA polymerase III subunit epsilon [Hahella chejuensis KCTC 2396] gi|83633363|gb|ABC29330.1| DNA polymerase III, epsilon subunit [Hahella chejuensis KCTC 2396] Length = 240 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 144/239 (60%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ RIIEIG VE++D S T + V++ P R+ A ++HGI Sbjct: 1 MRQIVLDTETTGLETSQGHRIIEIGCVEVIDRSLTGNHYHVYINPE-REVDAGAFEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL----DPS 121 ++EFL DKP F + +F DF + AE + HNA FDVGFI+ E + P D Sbjct: 60 SNEFLADKPKFKQVAQDFLDFIS--GAELVIHNAAFDVGFIDYEFSLLGA-PFGKVSDYC 116 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR+KHP +N+L++LCKRYGI SHR HGALLDS +L+DVY+ M G + + Sbjct: 117 SVVDTLMMARKKHPGQKNNLDALCKRYGIDNSHRDLHGALLDSEILADVYLAMTGGQTSL 176 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IW 237 + +ED +EE V I+ +R R ++ EL EH + + + K A +W Sbjct: 177 SL---HSEDGGTEEEASEVRRIN-TQRPSLRVIRASEAELAEHARQLDAVEKAAGFSLW 231 >gi|217970689|ref|YP_002355923.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|217508016|gb|ACK55027.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 239 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 96/231 (41%), Positives = 143/231 (61%), Gaps = 13/231 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD +N DR+IEIG VELLD S T R + V++ P GR EA+ +HGI Sbjct: 1 MRQIVLDTETTGLDWRNGDRVIEIGCVELLDRSLTGRHYHVYINP-GRGIDAEAVAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T+EFL DKP F+ I ++F DF ++AE + HNA FDVGF++AEL+R+ + L + + Sbjct: 60 TEEFLADKPKFADIVADFEDFV--RDAELVIHNASFDVGFLDAELERLGRAKLGALCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +A+ ++P + L++LC RY I +HR HGALLD+ LL++V++ M G + Sbjct: 118 VDTLKLAKEQNPGKKASLDALCDRYEIDNAHRELHGALLDAELLAEVFLAMTRGQESLMI 177 Query: 184 GFKTNEDRFFKE-EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 G +E+ +E + + P + R R + +E HD + + K Sbjct: 178 GL--DEEAAPRESDSEGTPVLRAAVR----VLRASADECAAHDAALADIAK 222 >gi|84684641|ref|ZP_01012542.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Maritimibacter alkaliphilus HTCC2654] gi|84667620|gb|EAQ14089.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Rhodobacterales bacterium HTCC2654] Length = 230 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 99/239 (41%), Positives = 148/239 (61%), Gaps = 17/239 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64 MR+IV D ETTG D K DR++EIGAVEL ++ T RT+ ++ P +++ PE A +HG Sbjct: 1 MREIVLDTETTGFDPKTGDRMVEIGAVELFNHMPTGRTYHQYINP--QRDMPEGAFAVHG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +++EFLKD P F+ I F +F +A+ + HNA FDV F+NAEL + + + I Sbjct: 59 LSEEFLKDYPVFADIADAFLEFIG--DAKLVIHNASFDVPFLNAELGWCKRRQIPMDQSI 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ---- 180 DTL IAR+K P + N L++LC+R+GI SHR+ HGALLDS +L++VY++ ++GG Q Sbjct: 117 DTLLIARKKFPGAGNSLDALCRRFGIDNSHRTLHGALLDSEILAEVYLE-LIGGRQPDLV 175 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + G D E+ + P R + L +RIT+EE H ++ LG +A+W + Sbjct: 176 LGGGGSQTSDTTQNEDWRPRP------RPEALPSRITEEERAAHQAFVEKLGASALWSK 228 >gi|326796075|ref|YP_004313895.1| DNA polymerase III subunit epsilon [Marinomonas mediterranea MMB-1] gi|326546839|gb|ADZ92059.1| DNA polymerase III, epsilon subunit [Marinomonas mediterranea MMB-1] Length = 235 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 143/239 (59%), Gaps = 14/239 (5%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG+D K RIIEIG VE++ T R F V++ P+ R+ EA ++HGI Sbjct: 1 MRQVVLDTETTGIDPKQGHRIIEIGCVEMIGRKLTKRHFHVYINPD-REVEEEAFQVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRI 123 ++EFL DKP F I EF DF + AE I HNA FDVGF++ E + P D I Sbjct: 60 SNEFLADKPRFHEIAQEFLDFI--RGAELIIHNAPFDVGFMDHEFSMLGNFPKTRDVCEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR+KHP ++N+L++LC+RYGI SHR HGALLDS +L+DVY+ +M GG Q + Sbjct: 118 FDSLVFARKKHPGAKNNLDALCRRYGIDNSHRELHGALLDSEILADVYL-LMTGG-QTSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTLGK---NAIW 237 G N D + V I L D+P+ R + E+ H++ + + K ++W Sbjct: 176 GLSMN-DGSEGGDSDNVGEIRRLSPDRPMLKVLRANETEMAAHEERLDLIDKKSGQSLW 233 >gi|83950782|ref|ZP_00959515.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius nubinhibens ISM] gi|83838681|gb|EAP77977.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius nubinhibens ISM] Length = 231 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 98/235 (41%), Positives = 140/235 (59%), Gaps = 7/235 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVEL ++ T T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPHSGDRIVEIGAVELFNHMPTGETYHQYINPE-RSMPQEAFQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F I F DF +A+ I HNA FD+ F+NAEL + + + ID Sbjct: 60 GDDFLRDKPVFKRIGQAFLDFIG--DAKLIIHNAAFDMKFLNAELGWMGLPQIPWEQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARR+ P S L++LC+R+ I S R+ HGALLDS +L++VY++ ++GG Q +F Sbjct: 118 TLEIARRRFPGSPASLDALCRRFNIDNSSRTLHGALLDSEILAEVYLE-LIGGRQPDFSL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 K E E + + N R PL +R+T+ E + H + +G AIW +Y Sbjct: 177 KVVEKA--PEPGEDMGNWRPKPRPTPLPSRLTEAEKNAHATFVGGMGDTAIWRKY 229 >gi|328474397|gb|EGF45202.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329] Length = 240 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 101/241 (41%), Positives = 148/241 (61%), Gaps = 24/241 (9%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ PEA++ Sbjct: 11 RIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQ 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 +HGITDEFL DKP ++SI EF DF + AE +AHNA FD GF++ E +++ DP Sbjct: 70 VHGITDEFLVDKPEYASIHQEFLDFI--KGAELVAHNASFDTGFMDYEFEKL--DPTIGK 125 Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ +M Sbjct: 126 TDDYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYL-LMT 184 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236 GG Q + F N+ E + + LK R T +EL+ H K ++ L + I Sbjct: 185 GG-QTSLEFNANKQEGGVETIRRIEGRKALK-----VLRATADELEAHQKRLE-LVNDCI 237 Query: 237 W 237 W Sbjct: 238 W 238 >gi|119385539|ref|YP_916595.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] gi|119375306|gb|ABL70899.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] Length = 239 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 147/243 (60%), Gaps = 9/243 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVEL+++ T RTF V++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPDTGDRIVEIGAVELMNHLPTGRTFHVYINPE-RPMPQEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I ++F F + +A+ + HNA FD+ F+NAEL+ + + SR +D Sbjct: 60 GDDFLRDKPKFAEIAADFVAFIGD-DAKLVIHNASFDMKFLNAELRMVGHATMPYSRAVD 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG---GSQIN 182 TL IAR P ++N L++LC+R+ I S+R+ HGALLDS LL++VY+ + G G + Sbjct: 119 TLEIARSMFPGAQNSLDALCRRFRIDNSNRTLHGALLDSELLAEVYLALRGGRQPGLVLE 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G + + P +R +PL RIT+ E + H + +G+ A+W RY Sbjct: 179 SGPMHGGTGTGAQAEGGTPRG---QRPRPLAPRITEAEAEAHAAFVAKMGEKAVWLRYGD 235 Query: 243 SNQ 245 +N Sbjct: 236 ANH 238 >gi|23010300|ref|ZP_00051037.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 236 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 142/241 (58%), Gaps = 14/241 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+IV D ETTG D+KN DR+IEIG VEL+++ +T + + P R S A +HGI Sbjct: 2 LREIVLDTETTGTDAKNGDRLIEIGCVELINHVQTGAYYHQLINPQ-RPVSEGAFAVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124 +D L DKP F+ + F F +A + HNA FDVGF+N E ++ P P I+ Sbjct: 61 SDAMLADKPVFADVVDAFVAFCG--DARLVIHNAPFDVGFLNMEFAKLG--PAAPPLIVL 116 Query: 125 ----DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ GG Q Sbjct: 117 EDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQ 175 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + G E + + + R + +R+T++E H +++LG NA+W Y Sbjct: 176 TSLGLSIAEPAGSVAVEAVADSGPIAPR--AMRSRLTEDERLRHVSFVESLGTNAVWRDY 233 Query: 241 I 241 + Sbjct: 234 L 234 >gi|70730658|ref|YP_260399.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf-5] gi|68344957|gb|AAY92563.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens Pf-5] Length = 249 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 98/249 (39%), Positives = 140/249 (56%), Gaps = 14/249 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ + RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122 +EFL KP F+ + EF+DF Q A+ I HNA FDVGFIN E + + D Sbjct: 63 NEFLVGKPRFAEVADEFFDFI--QGAQLIIHNAAFDVGFINNEFALMGQHERADITQHCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 121 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLS 180 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKN----AI 236 ++ E I L D+P + + EL EH ++ + K+ A+ Sbjct: 181 LAGNASDGNGSGEGAGQASEIRRLPADRPRGRIIQASDAELAEHQVRLEIIAKSAGAPAL 240 Query: 237 WDRYISSNQ 245 W + + + Q Sbjct: 241 WTQLLETQQ 249 >gi|300024773|ref|YP_003757384.1| DNA polymerase III subunit epsilon [Hyphomicrobium denitrificans ATCC 51888] gi|299526594|gb|ADJ25063.1| DNA polymerase III, epsilon subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 237 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 99/236 (41%), Positives = 149/236 (63%), Gaps = 7/236 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHG 64 MR+IV D ETTGLD K DR+IEIG +E+++ T F F+ P +N P EA +HG Sbjct: 1 MREIVLDTETTGLDPKTGDRLIEIGGIEIINRIPTGVEFHRFINPE--RNVPMEAQNVHG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ EFL KP F ++ +F F + + HNA+FDV F+N EL + + PL R++ Sbjct: 59 ISTEFLIGKPLFREVYRDFLAFIGDDI--LVIHNAQFDVNFLNHELGLVGEKPLSFDRVV 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++ARR+HP+ N L++LCKRYGI S R+KHGA++DS LL++VY++++ G Q FG Sbjct: 117 DTLALARRRHPAGPNSLDALCKRYGIDTSQRTKHGAIVDSLLLAEVYVELL-GERQATFG 175 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 +T E++ + +R +PL +R+T+ +L H I+ +G AIW+R+ Sbjct: 176 LQTIGSGAATSERRNGKRAAAKQRPEPLPSRLTEADLVAHRSFIEKMGAKAIWNRF 231 >gi|28899066|ref|NP_798671.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD 2210633] gi|153837020|ref|ZP_01989687.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] gi|260361704|ref|ZP_05774731.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|260876852|ref|ZP_05889207.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|260897333|ref|ZP_05905829.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|260899809|ref|ZP_05908204.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|28807290|dbj|BAC60555.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] gi|149749793|gb|EDM60538.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] gi|308088283|gb|EFO37978.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308091367|gb|EFO41062.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|308107229|gb|EFO44769.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|308113581|gb|EFO51121.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] Length = 240 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 101/241 (41%), Positives = 148/241 (61%), Gaps = 24/241 (9%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ PEA++ Sbjct: 11 RIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQ 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 +HGITDEFL DKP ++SI EF DF + AE +AHNA FD GF++ E +++ DP Sbjct: 70 VHGITDEFLVDKPEYASIHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEKL--DPTIGK 125 Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ +M Sbjct: 126 TDDYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYL-LMT 184 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236 GG Q + F N+ E + + LK R T +EL+ H K ++ L + I Sbjct: 185 GG-QTSLEFNANKQEGGVETIRRIEGRKALK-----VLRATADELEAHQKRLE-LVNDCI 237 Query: 237 W 237 W Sbjct: 238 W 238 >gi|114762190|ref|ZP_01441658.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Pelagibaca bermudensis HTCC2601] gi|114545214|gb|EAU48217.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Roseovarius sp. HTCC2601] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 101/235 (42%), Positives = 143/235 (60%), Gaps = 9/235 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL ++ T T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPETGDRIVEIGAVELYNHVPTGETYHQYINPE-RSMPQEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-I 124 D+FL+DKP F+ I EF +F +++ + HNA FDV F+NAEL +K PL P + Sbjct: 60 GDDFLRDKPLFAQIVDEFLEFIG--DSKLVIHNATFDVKFLNAELG-WSKRPLLPKDCAV 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL+IARRK P S L++LC+R+GI S R+ HGALLDS +L+DVY++ ++GG Q + Sbjct: 117 DTLAIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILADVYLE-LIGGKQPDLV 175 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 R N +R +PL RIT EE H ++ LG+ A+W R Sbjct: 176 LSPV--RQGGGSDGGDDNWRPQRRPEPLSPRITDEEKAAHAAFVEKLGEAALWSR 228 >gi|154245775|ref|YP_001416733.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] gi|154159860|gb|ABS67076.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] Length = 240 Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 97/235 (41%), Positives = 141/235 (60%), Gaps = 7/235 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR++EIG VE+++ T F V++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLEAYGGDRLVEIGCVEMVNRILTGTVFHVYINPE-RDMPVEAFNVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F + EF +F E + HNA FD+GF+NAEL+R+ + + R++D Sbjct: 60 SAEFLSDKPKFKDVADEFLNFIAEDT--LVIHNAAFDIGFLNAELERLGRPTIARDRVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++ARRKHP N L+ L RYGI S R KHGALLD+ LL++VY +++ GG Q + Sbjct: 118 TLALARRKHPGGGNRLDDLMNRYGIDSSRRVKHGALLDAELLAEVYGELL-GGKQASL-I 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ED + + V + R PL R+T E + H I ++G+ A+W +Y Sbjct: 176 GLVEDT-SEAPRLVVAAAAAHPRPVPLAPRLTAAEAEAHAAFIASMGEKALWLKY 229 >gi|99082698|ref|YP_614852.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040] gi|99038978|gb|ABF65590.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040] Length = 243 Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 144/245 (58%), Gaps = 21/245 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVELL++ T TF V++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPQ-RSMPHEAFGVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L KDKP F+ + F DF ++++ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQPPAPGQVILKDKPLFAEVGQAFLDFV--RDSKMVIHNASFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +N L + IDTL++AR++ P S L++LC+R+GI S+R+ HGALLDS +L+DVY+ Sbjct: 118 MNLPQLPMDQAIDTLAMARKRFPGSPATLDALCRRFGIDNSNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 + ++GG Q +FG + N R+ PL +R+T EE HD+ + LG Sbjct: 178 E-LIGGRQPDFGLSAQSS---GGQNAVDTNWRPAPRETPLPSRLTAEEKAAHDEFVGKLG 233 Query: 233 KNAIW 237 ++A+W Sbjct: 234 EDALW 238 >gi|159045988|ref|YP_001534782.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] gi|157913748|gb|ABV95181.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] Length = 230 Score = 175 bits (443), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 93/234 (39%), Positives = 144/234 (61%), Gaps = 11/234 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + S+ DR++EIG VEL ++ T R + ++ P R A ++HG+ Sbjct: 1 MREIVLDTETTGFEPSEGDRLVEIGGVELFNHVPTGRVYHQYINPQ-RSMPQSAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL DKP F+ + F DF +A+ + HNA FD+ F+NAEL + K L + ID Sbjct: 60 GDDFLADKPLFAEVAEAFLDFIG--DAKLVIHNAAFDMKFLNAELGWLGKPLLPMEQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARRK P S L++LC+R+G+ S R KHGALLDS +L++VY++ ++GG Q Sbjct: 118 TLAIARRKFPGSPASLDALCRRFGVDNSAREKHGALLDSEILAEVYLE-LIGGQQPGLEL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKNAIW 237 + + + V N L R + PL +R++++E H +++LG++A+W Sbjct: 177 SSVQ----TPSTQNVDNGHLRARPRPAPLPSRVSEKEKAAHAAFVESLGQSALW 226 >gi|110677834|ref|YP_680841.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh 114] gi|109453950|gb|ABG30155.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh 114] Length = 228 Score = 175 bits (443), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 98/232 (42%), Positives = 144/232 (62%), Gaps = 8/232 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D ++ DRI+EIGAVEL+ + T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGRTYHQYINPE-RSMPEEAFQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ + F DF +A+ + HNA FD+ F+NAEL IN + + ID Sbjct: 60 GDDFLRDKPKFAEVGQAFLDFIG--DAKLVIHNAAFDIKFLNAELGWINLPKIPWEQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR++ P S L++LC+R+GI + R+ HGALLDS +L++VY++ ++GG Q +FG Sbjct: 118 TLDIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLE-LIGGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 K T + + R PL +RIT+EE H + LG +A+W Sbjct: 177 SNIPQ---KSAGDTSVDWTPRPRPTPLPSRITEEEAAAHADFVAKLGDDAVW 225 >gi|153840553|ref|ZP_01993220.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] gi|149745784|gb|EDM56914.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] Length = 229 Score = 175 bits (443), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 99/239 (41%), Positives = 146/239 (61%), Gaps = 24/239 (10%) Query: 10 IVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ PEA+++H Sbjct: 2 VVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQVH 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL----- 118 GITDEFL DKP ++SI EF DF + AE +AHNA FD GF++ E +++ DP+ Sbjct: 61 GITDEFLVDKPEYASIHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEKL--DPIIGKTD 116 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 117 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMT--G 174 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 Q + F N+ E + + LK R T +EL+ H K ++ L + IW Sbjct: 175 GQTSLEFNANKQEGGVETIRRIEGRKALK-----VLRATADELEAHQKRLE-LVNDCIW 227 >gi|114769767|ref|ZP_01447377.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [alpha proteobacterium HTCC2255] gi|114549472|gb|EAU52354.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [alpha proteobacterium HTCC2255] Length = 230 Score = 174 bits (442), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 147/234 (62%), Gaps = 7/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV+D ETTG D DRI+EIGAVEL + T R + ++ P R P A ++HG+ Sbjct: 1 MREIVWDTETTGFDPFAGDRIVEIGAVELNQHLPTGRVYHQYINPE-RDMPPGAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FLKD P FS+I +F DF + A IAHNAKFD+ FINAEL+ N + ++ +D Sbjct: 60 SIDFLKDFPVFSNIARDFIDFVGD--ATLIAHNAKFDMKFINAELKNANLPQVPLNQSLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR+K P ++N L++LC+R+ I S R KHGALLDS +L++VY++ +VGG Q +F Sbjct: 118 TLEIARKKFPGAQNSLDALCRRFNIDNSSRQKHGALLDSEILAEVYLE-LVGGRQPDFSL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 K E + + + L R K L + +T E H+ I++L +AIW++ Sbjct: 177 SLVGQS--KLESTSDSSYAALSRPKKLNSLVTDVEKKAHNDFIKSLCASAIWNK 228 >gi|120554453|ref|YP_958804.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8] gi|120324302|gb|ABM18617.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8] Length = 236 Score = 174 bits (442), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 147/239 (61%), Gaps = 14/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D ++ RIIEIG VE+++ T R + V++ P R+ EA+ +HGI Sbjct: 1 MRQIVLDTETTGIDPNEGHRIIEIGCVEVIERELTGRNYHVYINPE-REVEAEAITVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123 T+EFL DKP F+ + EF++F + AE + HNA FDVGF+++E R+ + D I Sbjct: 60 TNEFLADKPKFAEVADEFFEFI--KGAELVIHNAAFDVGFMDSEFARLKPVRKTADHCGI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +D+L+IAR+KHP +N+L++LCKRYG+ S+R HGALLD+ +L+DVY+ M G + ++ Sbjct: 118 VDSLAIARKKHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVYLLMTGGQTALSL 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDR 239 + + + + IS +R R T +E HD+ + + K A +W R Sbjct: 178 DAGSGD----EGGDGGIRRIS-GERAPLAVVRATSDEASAHDEFMAMMEKQAGETVWSR 231 >gi|152995731|ref|YP_001340566.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1] gi|150836655|gb|ABR70631.1| DNA polymerase III, epsilon subunit [Marinomonas sp. MWYL1] Length = 237 Score = 174 bits (442), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 146/239 (61%), Gaps = 14/239 (5%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG+D K RIIEIG VE++ TNR F V++ P+ R+ EA ++HGI Sbjct: 1 MRQVVLDTETTGIDPKQGHRIIEIGCVEMIGRKLTNRHFHVYINPD-REVEEEAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRI 123 ++EFL DKP F I EF+DF + AE I HNA FD+GF++ E RI P + + Sbjct: 60 SNEFLADKPRFHEIAQEFFDFI--KGAELIIHNAPFDIGFMDHEFARIGGYPKTAEVCGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR+KHP +N+L+ LC+RYGI SHR HGALLDS +L+DVY+ +M GG Q + Sbjct: 118 FDSLVYARKKHPGQKNNLDILCRRYGIDNSHRELHGALLDSEILADVYL-LMTGG-QTSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTLGK---NAIW 237 G ++ + +E+ V I D+P R + EEL H++ + + K ++W Sbjct: 176 GLASSSES-ESKEEGGVEEIRRFSADRPALKVIRASSEELKLHEERLDLIDKKSGQSLW 233 >gi|254480788|ref|ZP_05094035.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2148] gi|214039371|gb|EEB80031.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2148] Length = 244 Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 96/239 (40%), Positives = 141/239 (58%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ RIIEIG VEL T + ++ PN R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEVSQGHRIIEIGCVELDTRRLTGNHYHQYINPN-REIDQGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122 T+EFLKDKPSF +F EF +F + +E + HNA FD+GF+N+E+QR+ D D + Sbjct: 60 TNEFLKDKPSFERVFREFLEFV--EGSELVIHNAPFDLGFLNSEIQRLEPDAPRLEDRCK 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR KHP RN L++LC+RYG+ S R HGALLDS +L+DVY+ M G + + Sbjct: 118 IVDTLVMARGKHPGQRNSLDALCQRYGVDNSQRDLHGALLDSEILADVYLLMTGGQTALQ 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237 + + + + ++ P+ T EEL H+ ++ + G +W Sbjct: 178 LSDNDSGAESGASRSERIIRLDAGRQALPVIAAST-EELAAHEAQLEAISSASGGKVLW 235 >gi|56479129|ref|YP_160718.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum EbN1] gi|56315172|emb|CAI09817.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum EbN1] Length = 239 Score = 174 bits (441), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 98/236 (41%), Positives = 145/236 (61%), Gaps = 22/236 (9%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD +N DR+IEIG VELL+ + T R + V++ P R EA+ +HGI Sbjct: 1 MRQIVLDTETTGLDWRNGDRVIEIGCVELLNRNLTGRHYHVYINPE-RGIDAEAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T++FL DKP+FS+I +EF DF ++AE I HNA FDVGF+N EL R+ + LD + + Sbjct: 60 TEDFLADKPTFSAIAAEFEDFI--RDAELIIHNASFDVGFLNHELSRLGRGKLDSLCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +A+ ++P + L++LC R+ I + R+ HGALLD+ LL++VY+ M G Sbjct: 118 IDTLKMAKEQNPGKKASLDALCDRHQIDNASRTLHGALLDAELLAEVYLAMTRG------ 171 Query: 184 GFKTNEDRFFKEEKKTVPNIS-----LLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++ ++ VP + L+ R R + EEL EH++ +Q + K Sbjct: 172 -----QESLIMVLEEPVPGSAEAGGVLVDRPPLKVLRASGEELAEHERVLQDIAKG 222 >gi|118161395|gb|ABK64077.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum] Length = 238 Score = 174 bits (441), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 102/241 (42%), Positives = 140/241 (58%), Gaps = 23/241 (9%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + DRI+EIGAVEL + T F ++ P R + AL +HG+ Sbjct: 1 MRQIVLDTETTGLNPRTGDRILEIGAVELNNRMLTGNNFHHYINPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T EFL DKP F+ I EF F AE I HNA FD+GF+NAE +R+N P+ + Sbjct: 60 TTEFLSDKPKFAEIAEEFRAFI--AGAELIIHNAPFDIGFLNAEFKRLNLPPVHEQVHGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A+ HP RN L++LC RYG++ +HR HGALLDS LL+DVY+ M G + ++ Sbjct: 118 IDTLVQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQNSLS- 176 Query: 184 GFKTNEDRFFKEEKKTVPNISLLK---RDKPLFTRITKEELDEHDKTIQTLGKNA----I 236 +EE + + ++L+ + +F T +EL H+ TI L K A I Sbjct: 177 ---------MEEEVEVAADGAVLEIVPLAEVIFQSATADELAAHEATIAGLDKAAKGQCI 227 Query: 237 W 237 W Sbjct: 228 W 228 >gi|229590113|ref|YP_002872232.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens SBW25] gi|229361979|emb|CAY48879.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens SBW25] Length = 248 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 101/237 (42%), Positives = 142/237 (59%), Gaps = 11/237 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R +V D ETTG+ + RIIEIG VEL+ T R F V+L P+ R + A+ +HGI Sbjct: 3 IRSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPD-RDSDEGAIGVHGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSR-- 122 TDEFLK KP F+ + EF++F N A+ I HNA FDVGFIN E + + D D S+ Sbjct: 62 TDEFLKGKPRFAEVADEFFEFIN--GAQLIIHNAAFDVGFINNEFALMGQTDRADISKHC 119 Query: 123 -IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + + Sbjct: 120 SILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSL 179 Query: 182 NFGFKTNEDRFFKEEKKTVPN-ISLLKRD-KPL-FTRITKEELDEHDKTIQTLGKNA 235 + ++ E P+ I L D KP R ++++L EH ++ + K+A Sbjct: 180 SLAGNASDGTGSAEGSGNRPSEIRRLPADRKPTPIIRASEQDLAEHAARLEAIAKSA 236 >gi|77464814|ref|YP_354318.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Rhodobacter sphaeroides 2.4.1] gi|221640733|ref|YP_002526995.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131] gi|77389232|gb|ABA80417.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Rhodobacter sphaeroides 2.4.1] gi|221161514|gb|ACM02494.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides KD131] Length = 229 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 98/234 (41%), Positives = 142/234 (60%), Gaps = 12/234 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + S+ RI+EIGAVEL ++ T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP F++I F DF E A + HNA FD+ F+N EL R L P + +D Sbjct: 60 GDEFLRDKPVFAAIGRAFLDFVGE--ARLVIHNAAFDMKFLNFELGRAGLPRLAPDQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR++ P + L++LC+R+G+ S R KHGALLDS +L++VY++ ++GG Q +FG Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLE-LIGGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIW 237 ++ + P R +P L RIT+EE H + LG AIW Sbjct: 177 ASSAG-----ARPGSPEGEWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIW 225 >gi|254283824|ref|ZP_04958792.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B] gi|219680027|gb|EED36376.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B] Length = 244 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 97/241 (40%), Positives = 138/241 (57%), Gaps = 15/241 (6%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTGL+ ++ RIIEIG VEL++ T + ++ P R+ P A+++HGI Sbjct: 1 MRHVVLDTETTGLEVTQGHRIIEIGCVELVNRKLTGNHYHQYVQPQ-REIDPGAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122 T +FL DKP+F + EF F + AE I HNA FDVGFI+AEL R+ D R Sbjct: 60 TPDFLADKPTFDRVADEFLAFID--GAELIIHNAPFDVGFIDAELDRLGARRTAVADHCR 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + D+L +ARRKHP RN L++LC+RYG+ S R+ HGALLD+ +L+DV++ M G Q + Sbjct: 118 VTDSLVLARRKHPGQRNSLDALCQRYGVDNSTRTLHGALLDAEILADVFLLMT--GGQTS 175 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTL----GKNAI 236 G +E+ I L +P R + EEL H++ + + G I Sbjct: 176 LGLSDDEEGSLDTADNPDGGIRRLPTSRPPLRVMRASAEELARHEQRLDAIAAASGGPVI 235 Query: 237 W 237 W Sbjct: 236 W 236 >gi|149204383|ref|ZP_01881350.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035] gi|149142268|gb|EDM30315.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035] Length = 231 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 96/235 (40%), Positives = 140/235 (59%), Gaps = 6/235 (2%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + ++ DRI+EIGAVEL ++ T RTF ++ P R A +HG+ Sbjct: 1 MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQ-RAMPEAAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I EF DF Q+A + HNA FD+ F+NAEL + L + +D Sbjct: 60 GDDFLRDKPLFAEIAQEFLDFV--QDARLVIHNAAFDMKFLNAELGWLKLPQLPWDQAVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR+K P S L++LC+R+ I S R+ HGALLDS +L++VY++ ++GG Q +F Sbjct: 118 TLAIARKKFPGSPASLDALCRRFQIDNSARTLHGALLDSEILAEVYLE-LIGGRQPDFVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 T T + R PL +R+T E D H + +G A+W ++ Sbjct: 177 ATGPTAKSGGSTDTA-HWRPQPRPTPLASRLTATENDAHQAFVAKMGDAALWRKF 230 >gi|149377452|ref|ZP_01895195.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893] gi|149358293|gb|EDM46772.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893] Length = 236 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 97/244 (39%), Positives = 151/244 (61%), Gaps = 18/244 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D ++ RIIEIG VEL++ T R + V++ P R+ EA+ +HGI Sbjct: 1 MRQIVLDTETTGIDPAEGHRIIEIGCVELMERQITGRHYHVYINPE-REVEAEAITVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123 T+EFL DKP F++I EF++F + AE + HNA FD+GF+++E R+ + + + Sbjct: 60 TNEFLADKPKFAAIADEFFEFI--KGAELVIHNAAFDIGFMDSEFARLKPVRRTTEHCGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +D+L+IAR+KHP +N+L++LCKRYGI S+R HGALLD+ +L+DVY+ + G + ++ Sbjct: 118 VDSLAIARKKHPGQKNNLDALCKRYGIDNSNRELHGALLDAEILADVYLLLTGGQTALSL 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDK-PL-FTRITKEELDEHDKTIQTLGKNA---IWD 238 + E I L D+ PL R + +E + HD+ + L K A +WD Sbjct: 178 DAGGD-------EAGGEGGIRRLADDRNPLPVPRASDDERNAHDEFMALLAKQAGTTVWD 230 Query: 239 RYIS 242 + + Sbjct: 231 KLTT 234 >gi|85375423|ref|YP_459485.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis HTCC2594] gi|84788506|gb|ABC64688.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis HTCC2594] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/233 (39%), Positives = 133/233 (57%), Gaps = 6/233 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD K DR++EIG VEL++ T TF + P R P A ++HG+ Sbjct: 1 MREIVFDTETTGLDPKTGDRMVEIGCVELMNRVPTGETFHAYYNPE-RDMPPAAEEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL DKP F +F +A +AHNA FD GF+N EL+ I ++ + R++D Sbjct: 60 SAAFLSDKPLFRDTADALLEFLG--DAPLVAHNAGFDFGFLNTELELIEREAISLDRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ IAR+KHP ++ L++LC RYG+ SHR KHGALLD+ LL+ VY++++ GG QI G Sbjct: 118 TVQIARKKHPGAKVSLDALCSRYGVDRSHRVKHGALLDAELLAQVYVELL-GGRQIGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 E P P + EEL H ++ + ++ +W+ Sbjct: 177 DPEAADTDPSEAAWKPETVARAFRTPRPHAASAEELARHKVFLEGI-ESPLWN 228 >gi|311694693|gb|ADP97566.1| DNA polymerase 3, epsilon subunit [marine bacterium HP15] Length = 239 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 98/246 (39%), Positives = 145/246 (58%), Gaps = 18/246 (7%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 MR+IV D ETTG+D ++ RIIEIG VEL++ T R + V++ P+ R+ EA+ +H Sbjct: 2 QAMRQIVLDTETTGIDPAEGHRIIEIGCVELMERQLTGRNYHVYINPD-REVEAEAITVH 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPS 121 GIT+EFL DKP F+ I EF++F + AE + HNA FDVGF+++E R+ + D Sbjct: 61 GITNEFLADKPRFAEIADEFFEFI--KGAELVIHNAAFDVGFMDSEFARLKPVRKTADHC 118 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I+D+L+IAR +HP +N+L++LCKRYG+ S+R HGALLD+ +L+DVY +++ G Q Sbjct: 119 GIVDSLAIARARHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVY--LLLTGGQT 176 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDK-PL-FTRITKEELDEHDKTIQTLGKNA---I 236 E I L D+ PL R + E + H + + L K A + Sbjct: 177 ALSLDAG-----SENGGGNGGIRRLPADRAPLSVVRASSSEAEAHQEFMSLLEKQAGETV 231 Query: 237 WDRYIS 242 W + S Sbjct: 232 WGKLQS 237 >gi|326386170|ref|ZP_08207794.1| DNA polymerase III, epsilon subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326209395|gb|EGD60188.1| DNA polymerase III, epsilon subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 230 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 91/202 (45%), Positives = 127/202 (62%), Gaps = 10/202 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD +N DR++EIG VEL++ T F + P+ R EA +HG+ Sbjct: 1 MREIVFDTETTGLDPRNGDRLVEIGCVELVNRIATGSVFHCYFNPD-RDMPAEAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL DKP FS +E DF +A +AHNA FD GF+N+EL + R++D Sbjct: 60 SAAFLSDKPKFSERAAELLDFLG--DAPLVAHNAGFDFGFLNSELTFCGMGEVSRDRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IARRKHP ++ L++LC RYGI SHR+KHGALLD+ LL+ +Y+++M GG QI G Sbjct: 118 TVAIARRKHPGAKLSLDALCSRYGIDRSHRTKHGALLDAELLAQLYVELM-GGRQI--GL 174 Query: 186 KTNEDRF---FKEEKKTVPNIS 204 + D E+ T P ++ Sbjct: 175 ELAADTLTVAVSEDAPTRPQLA 196 >gi|126463657|ref|YP_001044771.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] gi|126105321|gb|ABN77999.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 98/234 (41%), Positives = 142/234 (60%), Gaps = 12/234 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + S+ RI+EIGAVEL ++ T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP F++I F DF E A + HNA FD+ F+N EL R L P + +D Sbjct: 60 GDEFLRDKPVFAAIGRAFLDFVGE--ARLVIHNAAFDMKFLNFELGRSGLPRLAPDQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR++ P + L++LC+R+G+ S R KHGALLDS +L++VY++ ++GG Q +FG Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLE-LIGGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIW 237 ++ + P R +P L RIT+EE H + LG AIW Sbjct: 177 ASSAG-----ARPGSPEGEWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIW 225 >gi|254511557|ref|ZP_05123624.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium KLH11] gi|221535268|gb|EEE38256.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium KLH11] Length = 240 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 98/247 (39%), Positives = 146/247 (59%), Gaps = 22/247 (8%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D ++ DRI+EIGAVEL ++ T T+ V++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELWNHVATGETYHVYINPE-RGMPDEAFGVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L KDKP F+ + F DF +A+ + HNA FD+ F+NAEL Sbjct: 60 GPDLLENPRPPEKGEVTLKDKPVFAKVGQGFRDFVG--DAQLVIHNASFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + ++ IDTL+IAR++ P S L++LC+R+GI S+R HGALLDS +L++VY+ Sbjct: 118 MGVPLIPMAQAIDTLAIARKRFPGSPASLDALCRRFGIDNSNRVLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 + ++GG Q +FG T+ + P R PL +RIT++E H K ++ LG Sbjct: 178 E-LIGGRQPDFGLSTSASNAAGGGDEWRPT----ARPTPLSSRITEDERAAHQKFVEGLG 232 Query: 233 KNAIWDR 239 ++A+W R Sbjct: 233 ESALWTR 239 >gi|260429270|ref|ZP_05783247.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] gi|260419893|gb|EEX13146.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] Length = 230 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 144/234 (61%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL ++ T +T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPETGDRIVEIGAVELYNHVPTGKTYHQYINPE-RSMPNEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I +F +F +A+ + HNA FDV F+NAEL+ + L ID Sbjct: 60 GDDFLRDKPLFAQIVDDFLEFIG--DAKLVIHNAAFDVKFLNAELRWSKRPQLPRDCAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARRK P S L++LC+R+GI S R+ HGALLDS +L+DVY++ ++GG Q + Sbjct: 118 TLEIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILADVYLE-LIGGKQPDLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 T + + + + +R L +R+++EE H ++ LG NA+W R Sbjct: 177 -TPAGQKSGADSASAGDWRPQRRAVALPSRLSEEEKAAHAAFVEKLGANALWTR 229 >gi|307297035|ref|ZP_07576851.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum L-1] gi|306877561|gb|EFN08789.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum L-1] Length = 230 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 95/238 (39%), Positives = 138/238 (57%), Gaps = 19/238 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTG D + DR++EIG +EL + T RTF + P R A +HG+ Sbjct: 1 MREIIFDTETTGFDPASGDRLVEIGCIELFNRVPTGRTFHAYYNPQ-RSMPAAAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D FL+DKP F E F +++ +AHNA+FD GF+N EL+ + R+ID Sbjct: 60 SDGFLRDKPLFGHGVQELLAFL--EDSHLVAHNARFDFGFLNHELKLCGLPEVSMDRMID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IAR+ HP +++ L++LC RYGI SHR KHGALLD+ LL+ +YI+ + GG QI G Sbjct: 118 TVAIARQIHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIE-LTGGRQIGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTR------ITKEELDEHDKTIQTLGKNAIW 237 +EE+K + N+ L + R + EEL+ H + TL K +W Sbjct: 177 A-------QEEEKLIVNMELAAKAAVRPVRPARVFAASAEELERHAAFVATLEK-PLW 226 >gi|332559710|ref|ZP_08414032.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N] gi|332277422|gb|EGJ22737.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N] Length = 229 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 98/234 (41%), Positives = 142/234 (60%), Gaps = 12/234 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + S+ RI+EIGAVEL ++ T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP F++I F DF E A + HNA FD+ F+N EL R L P + +D Sbjct: 60 GDEFLRDKPVFAAIGRAFLDFVGE--ARLVIHNAVFDMKFLNFELGRAGLPRLAPDQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR++ P + L++LC+R+G+ S R KHGALLDS +L++VY++ ++GG Q +FG Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLE-LIGGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIW 237 ++ + P R +P L RIT+EE H + LG AIW Sbjct: 177 ASSAG-----ARPGSPEGEWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIW 225 >gi|262276480|ref|ZP_06054289.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] gi|262220288|gb|EEY71604.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] Length = 247 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 100/248 (40%), Positives = 148/248 (59%), Gaps = 31/248 (12%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ PEA+ Sbjct: 7 RIIVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIDPEAIS 65 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGITDEFL+DKPS++ I +EF +F + AE +AHNA FD GF++ E Q LDPS Sbjct: 66 VHGITDEFLRDKPSYADIHAEFLEFI--KGAELVAHNAPFDTGFMDHEFQM-----LDPS 118 Query: 122 --------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 119 IGKTGDFCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLL 178 Query: 174 MMVGGSQINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 M G + + FG + D+ E ++ LK R + +EL EH+ + + Sbjct: 179 MTGGQTTLKFGGSESSDQDSGGEAIRRVEAGTKKLK-----IIRASADELKEHEAQLDVI 233 Query: 232 GK--NAIW 237 K + +W Sbjct: 234 EKKGSCLW 241 >gi|254477303|ref|ZP_05090689.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11] gi|214031546|gb|EEB72381.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11] Length = 244 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 144/246 (58%), Gaps = 20/246 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVELL++ T TF V++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPAEAFGVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F+ + F DF ++++ I HNA FD+ F+N EL+R Sbjct: 60 GPDLLEPPQQPAPGAVTLRDKPVFAKVGKAFVDFV--RDSKMIIHNASFDMKFLNYELER 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L + +DTL+IAR++ P S L++LC+R+ I S+R+ HGALLDS +L+DVY+ Sbjct: 118 MGLAALPMDQAVDTLAIARKRFPGSPATLDALCRRFNIDNSNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 + ++GG Q +FG T + K V + R PL RIT++E + H + +G Sbjct: 178 E-LIGGRQPDFGLSTAKSE--KSSTVQVDDWRPTARPSPLPPRITEQEKEAHAAFVAKMG 234 Query: 233 KNAIWD 238 + A+W+ Sbjct: 235 EGALWN 240 >gi|269101978|ref|ZP_06154675.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268161876|gb|EEZ40372.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 241 Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 101/240 (42%), Positives = 145/240 (60%), Gaps = 17/240 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R IVFD ETTG++ + RIIEIGAVE+++ T TF V++ P+ R PEA+++ Sbjct: 7 RIIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPD-RAIDPEAIEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119 HGITDEFL KP+++ I EF DF Q AE +AHNA FD+GF++ E +++ L + Sbjct: 66 HGITDEFLVGKPTYAEIHQEFMDFI--QGAELVAHNAPFDIGFMDYEFRKLGLKDLKTDE 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ DTL +A+R P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ MM GG Sbjct: 124 MCKVTDTLDMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYL-MMTGG- 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--IW 237 Q + + E E + S K K + R + +E+ H+ + +GK A IW Sbjct: 182 QTSLQLSSGESSAAGAENEIRRLTSGRKALKVI--RASADEIAAHEDRLDLIGKKADVIW 239 >gi|163745117|ref|ZP_02152477.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45] gi|161381935|gb|EDQ06344.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45] Length = 229 Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 93/233 (39%), Positives = 143/233 (61%), Gaps = 10/233 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D ++ DRI+EIGAVEL+++ T T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMNHMATGETYHQYINPE-RGMPEEAFQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I F DF ++ I HNA FD+ F+NAEL+ + + + +D Sbjct: 60 GDDFLRDKPKFAQIGKSFLDFIG--TSKLIIHNAAFDIKFLNAELRWMGLPQIPWEQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR++ P S L++LC+R+GI + R+ HGALLDS +L++VY++ ++GG Q +F Sbjct: 118 TLEIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLE-LIGGRQPDFAL 176 Query: 186 KTNEDRFFKE-EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + +R E + + P R PL +R+T+ E H I LG + +W Sbjct: 177 SSAPERKSGEPDTRWTPK----ARPNPLPSRLTEAEAAAHADFIGKLGDDVLW 225 >gi|134095496|ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans] gi|133739399|emb|CAL62449.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans] Length = 234 Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 99/233 (42%), Positives = 139/233 (59%), Gaps = 18/233 (7%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ ++ DRIIEIG VEL+D T F ++ P R + AL +HG+ Sbjct: 1 MRQIVLDTETTGLNPRSGDRIIEIGCVELIDRRLTGNNFHHYINPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122 T EFL DKP F+ I EF D+ + AE + HNA FDVGF++AEL+R+ PL Sbjct: 60 TTEFLSDKPKFAEIVDEFRDYIS--GAEVVIHNAPFDVGFLDAELKRVEM-PLFKDHVGG 116 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI- 181 I+DTL A+ HP RN L++LC RYG++ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 117 ILDTLQQAKELHPGKRNSLDALCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLS 176 Query: 182 -NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + G + + E + +I L T EEL EH+ +Q+L K Sbjct: 177 MDLGGQDADSDGIALEVVAIADI--------LLQPATAEELAEHELLMQSLDK 221 >gi|307610085|emb|CBW99626.1| hypothetical protein LPW_13941 [Legionella pneumophila 130b] Length = 233 Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 97/232 (41%), Positives = 140/232 (60%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTG+ + R+IEIG +EL+D T + F ++L P R+ A ++HGI Sbjct: 1 MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRI 123 + EFL+DKP F I +EF F + +E I HNA FDVGF+N+EL+ + NK D RI Sbjct: 60 STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR KHP RN L++LCKRY I +R HGALLD+ +L+ VY+ M G S + Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 F E F + + KT I L KP+ + +EEL +H ++ + K + Sbjct: 176 -FTEVESSFSQSKIKT-QEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 225 >gi|54294270|ref|YP_126685.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens] gi|53754102|emb|CAH15575.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens] Length = 233 Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 97/232 (41%), Positives = 140/232 (60%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTG+ + R+IEIG +EL+D T + F ++L P R+ A ++HGI Sbjct: 1 MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRI 123 + EFL+DKP F I +EF F + +E I HNA FDVGF+N+EL+ + NK D RI Sbjct: 60 STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR KHP RN L++LCKRY I +R HGALLD+ +L+ VY+ M G S + Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 F E F + + KT I L KP+ + +EEL +H ++ + K + Sbjct: 176 -FTEVESSFSQSKIKT-QEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 225 >gi|71726088|gb|AAZ39211.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum] Length = 238 Score = 171 bits (434), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 99/241 (41%), Positives = 138/241 (57%), Gaps = 23/241 (9%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + DRI+EIG VEL + T F ++ P R + AL +HG+ Sbjct: 1 MRQIVLDTETTGLNPRTGDRILEIGGVELNNRMLTGNNFHQYINPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T EFL DKP F+ I EF F AE I HNA FD+GF+NAE +R+N P+ + Sbjct: 60 TTEFLSDKPKFAEIAEEFRAFI--AGAELIIHNAPFDIGFLNAEFKRLNLPPVHEQVHGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A+ HP RN L++LC RYG++ +HR HGALLDS LL+DVY+ M G + ++ Sbjct: 118 IDTLVQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQNSLS- 176 Query: 184 GFKTNEDRFFKEEKKTVPN---ISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----I 236 +EE + + + ++ + +F T +EL H+ +I L K A I Sbjct: 177 ---------MEEEVEVAADGAALEIVPLAEVIFQSATADELAAHEASIAGLDKAAKGQCI 227 Query: 237 W 237 W Sbjct: 228 W 228 >gi|329900785|ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] gi|327549374|gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] Length = 235 Score = 171 bits (433), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 142/231 (61%), Gaps = 13/231 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ ++ DR+IEIG VE+++ T + F +L P R + AL +HG+ Sbjct: 1 MRQIVLDTETTGLNPRSGDRVIEIGCVEMINRRLTGKNFHCYLNPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122 T EFL+DKP F+++ +E D+ + AE I HNA FDVGF++AE +R++ PL S Sbjct: 60 TTEFLRDKPKFAAVAAELRDYIS--GAEVIIHNAPFDVGFLDAEFKRLDI-PLFNTQVSG 116 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL A+ HP RN L+SLC RYG++ +HR+ HGALLD+ LL++VY+ M G + ++ Sbjct: 117 VIDTLVQAKEMHPGKRNSLDSLCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLS 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + ++ ++ L+ L + EEL EH+ + L K Sbjct: 177 MELDDGD-----QAGESGAHLELVPLADILVLPASAEELGEHELALTALDK 222 >gi|89075025|ref|ZP_01161470.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34] gi|89049264|gb|EAR54828.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34] Length = 241 Score = 171 bits (433), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 100/246 (40%), Positives = 145/246 (58%), Gaps = 17/246 (6%) Query: 2 IRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IVFD ETTG++ + RI+EIGAVE+++ T +TF V++ P+ R Sbjct: 1 MKATNQRIIVFDTETTGMNMTGPHYEGHRIVEIGAVEIINRKLTGKTFHVYIKPD-RPID 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA+ +HGITDEFL KPS++ I EF DF + AE +AHNA FD+GF++ E Q + D Sbjct: 60 PEAIDVHGITDEFLIGKPSYADIHQEFIDFID--GAELVAHNASFDIGFMDYEFQLMGSD 117 Query: 117 ---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D ++ DTL +A+R P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYL- 176 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 MM GG K + D EK+ + +R + +EL H++ + +GK Sbjct: 177 MMTGGQT---SLKLSGDNEGDSEKEFAIKRLVGERKGLKVICASADELVSHEERLDLIGK 233 Query: 234 NA--IW 237 A +W Sbjct: 234 KADVLW 239 >gi|256823144|ref|YP_003147107.1| DNA polymerase III subunit epsilon [Kangiella koreensis DSM 16069] gi|256796683|gb|ACV27339.1| DNA polymerase III, epsilon subunit [Kangiella koreensis DSM 16069] Length = 233 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 101/238 (42%), Positives = 149/238 (62%), Gaps = 13/238 (5%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VEL++ T + +L P+ R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEPYDGHRIIEIGCVELVNRKFTGNHYHQYLQPD-REIDQGAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPL-DPSR 122 T+EFL+DKP F + EF +F + AE + HNA FDVGF++ EL ++ K L D Sbjct: 60 TNEFLEDKPRFVDVVDEFLEFI--EGAELVIHNAPFDVGFLDHELSMLDSSKGKLSDYCT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+ HP RN L++LCKRY I SHR HGALLDS +L+DVY++M G + + Sbjct: 118 VLDTLVLARQMHPGQRNSLDALCKRYEIDNSHRELHGALLDSEILADVYLRMTGGQTSLT 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKNAIWDR 239 G + ++ E TV IS + +PL + T++E EH + + +L +AIW++ Sbjct: 178 LGRQNAANQQTTE--TTVRRISANR--QPLKVIKATEQESKEHQQKLSSL-NDAIWNQ 230 >gi|153835770|ref|ZP_01988437.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01] gi|156975479|ref|YP_001446386.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116] gi|148867537|gb|EDL66875.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01] gi|156527073|gb|ABU72159.1| hypothetical protein VIBHAR_03210 [Vibrio harveyi ATCC BAA-1116] Length = 238 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 99/239 (41%), Positives = 146/239 (61%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ P+A+ Sbjct: 11 RIVVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAIG 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PL 118 +HGITDEFL DKP +S++ EF DF + AE +AHNA FD GF++ E + +N Sbjct: 70 VHGITDEFLVDKPEYSAVHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEMLNPSIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ +M GG Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYL-LMTGG 186 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 Q + F N+ E + V LK R T +E++ H K ++ L ++IW Sbjct: 187 -QTSLEFNANKKDGEAEGIRRVEGRKALK-----VLRATADEVEAHQKRLE-LVNDSIW 238 >gi|146278706|ref|YP_001168865.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] gi|145556947|gb|ABP71560.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] Length = 237 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/233 (42%), Positives = 140/233 (60%), Gaps = 10/233 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + S+ RI+EIGAVEL ++ T RT+ ++ P R EA ++HG+ Sbjct: 9 MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 67 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP FS I S F +F E A + HNA FD+ F+N EL R+ L R +D Sbjct: 68 GDEFLRDKPVFSEIGSAFLEFVGE--ARLVIHNAAFDMKFLNFELGRVGLPRLPFERALD 125 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR++ P + L++LC+R+G+ S R KHGALLDS +L++VY++ ++GG Q +FG Sbjct: 126 TLALARKRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLE-LIGGRQPDFGL 184 Query: 186 KTNED-RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 R E + P R L RIT+EE H + LG AIW Sbjct: 185 SAASGTRSGGAEGEWRPR----PRPVALPPRITEEEAAAHAAFVAKLGDGAIW 233 >gi|90581658|ref|ZP_01237447.1| DNA polymerase III subunit epsilon [Vibrio angustum S14] gi|90437142|gb|EAS62344.1| DNA polymerase III subunit epsilon [Vibrio angustum S14] Length = 241 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/246 (40%), Positives = 145/246 (58%), Gaps = 17/246 (6%) Query: 2 IRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IVFD ETTG++ + RIIEIGAVE+++ T +TF V++ P+ R Sbjct: 1 MKATNQRIIVFDTETTGMNMTGPHYEGHRIIEIGAVEIINRKLTGKTFHVYIKPD-RPID 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA+ +HGITDEFL KPS++ I EF DF + AE +AHNA FD+GF++ E Q + D Sbjct: 60 PEAIDVHGITDEFLIGKPSYADIHQEFIDFID--GAELVAHNASFDIGFMDYEFQLMGSD 117 Query: 117 ---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D ++ DTL +A+R P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYL- 176 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 MM GG K + D EK+ + +R + +EL H++ + +GK Sbjct: 177 MMTGGQT---SLKLSGDDEGDSEKEFAIKRLVSERKGLKVICASADELVSHEERLDLIGK 233 Query: 234 --NAIW 237 + +W Sbjct: 234 KTDVLW 239 >gi|259417863|ref|ZP_05741782.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] gi|259346769|gb|EEW58583.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] Length = 243 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 98/246 (39%), Positives = 142/246 (57%), Gaps = 21/246 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVELL++ T TF V++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPHEAFGVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L KDKP F+ + F DF ++++ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQPAAPGQVTLKDKPLFAEVGQAFLDFV--RDSKMVIHNASFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +N L + IDTL++AR++ P S L++LC+R+ I S+R+ HGALLDS +L+DVY+ Sbjct: 118 MNLRQLPMEQAIDTLAMARKRFPGSPATLDALCRRFSIDNSNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 + ++GG Q +FG T + N R PL +R+T EE H++ + LG Sbjct: 178 E-LIGGRQPDFGLSTQSG---SGQNAADTNWRPSPRATPLPSRLTSEEKTAHEEFVAKLG 233 Query: 233 KNAIWD 238 A+W+ Sbjct: 234 AEALWN 239 >gi|261856413|ref|YP_003263696.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus c2] gi|261836882|gb|ACX96649.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus c2] Length = 237 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 99/234 (42%), Positives = 138/234 (58%), Gaps = 13/234 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+ + + R++EIGAVE+++ T +TF +L P R A +HG++ Sbjct: 4 RQIVLDTETTGMPAADGHRLVEIGAVEMIERRVTGKTFHCYLNPE-RLVDEGAFNVHGLS 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLD--PSRI 123 D FL DKP F+ + EF F AE I HNA+FDVGF++AEL R+ N L + Sbjct: 63 DAFLADKPKFADVVDEFLAFI--AGAELIIHNAEFDVGFLDAELARLANGGRLADVAGSV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L+IAR+KHP RN L++LC+RY I S R+ HGALLDS +L+DVY+ + G Q Sbjct: 121 TDSLAIARKKHPGQRNSLDALCRRYSIDNSARTLHGALLDSEILADVYLALT--GGQKTL 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT--KEELDEHDKTIQTLGKNA 235 GF + + +E K +I L D+P IT +EE H + TLGK Sbjct: 179 GFDSEHGQ--GDEHKQAASIIRLPADRPPLRVITANEEERAAHAAWLVTLGKEG 230 >gi|312883833|ref|ZP_07743552.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC BAA-2122] gi|309368582|gb|EFP96115.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC BAA-2122] Length = 244 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 19/244 (7%) Query: 5 NKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++ R IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R E Sbjct: 8 DQHRIIVLDTETTGMNLEGGPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQAE 66 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-- 116 A+ +HGITDEFL+DKP + + +EF F N AE +AHNA FDVGF++ E ++ Sbjct: 67 AVGVHGITDEFLRDKPEYKDVHAEFLAFIN--GAELVAHNASFDVGFMDYEFSMLDASIG 124 Query: 117 -PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 125 KTAQYCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMT 184 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G + + F + + + K+ LK R T +E+D H+K ++ + KN Sbjct: 185 GGQTSLQFNAGSASEEGVESIKRAAQGRKALK-----VLRATADEIDAHEKRLELIEKNG 239 Query: 236 --IW 237 +W Sbjct: 240 HCLW 243 >gi|269960617|ref|ZP_06174989.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3] gi|269834694|gb|EEZ88781.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3] Length = 238 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 98/239 (41%), Positives = 146/239 (61%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RI+EIGAVE+++ T R F V+L P+ R+ P+A+ Sbjct: 11 RIVVLDTETTGMNLEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAIG 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PL 118 +HGITDEFL DKP +S++ EF DF + AE +AHNA FD GF++ E + +N Sbjct: 70 VHGITDEFLVDKPEYSAVHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEMLNPSIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ +M GG Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYL-LMTGG 186 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 Q + F N+ E + V LK R T +E++ H K ++ L ++IW Sbjct: 187 -QTSLEFNANKKDGEAEGIRRVEGRKALK-----VLRATADEVEAHQKRLE-LVNDSIW 238 >gi|87198139|ref|YP_495396.1| DNA polymerase III, epsilon subunit [Novosphingobium aromaticivorans DSM 12444] gi|87133820|gb|ABD24562.1| DNA polymerase III, epsilon subunit [Novosphingobium aromaticivorans DSM 12444] Length = 230 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 92/234 (39%), Positives = 133/234 (56%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD ++ DR++EIG +E+ + T F + P R EA +HG+ Sbjct: 2 MREIVFDTETTGLDPRSGDRLVEIGCIEMFNRVPTGAVFHCYFNPE-RDMPAEAEAVHGL 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL DKP F+ + F ++ +AHNA FD GFIN EL+ ++P+ R++D Sbjct: 61 SIAFLSDKPKFAEKADDLLAFI--ADSPMVAHNAGFDFGFINNELELCGREPVSRDRMVD 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IARRKHP ++ L++LC RYGI SHR+KHGALLD+ LL+ +Y+++ GG QI Sbjct: 119 TVAIARRKHPGAKLSLDALCSRYGIDRSHRTKHGALLDAELLAQLYVELQ-GGRQIGLEL 177 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 EE TV + P + EEL H + + + IW R Sbjct: 178 AAQSAIAVTEEVVTVTSSVTRVFRSPRPHSASAEELARHAEFMAGFSE-PIWSR 230 >gi|187479401|ref|YP_787426.1| DNA polymerase III subunit epsilon [Bordetella avium 197N] gi|115423988|emb|CAJ50541.1| DNA polymerase III, epsilon chain [Bordetella avium 197N] Length = 243 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 97/240 (40%), Positives = 138/240 (57%), Gaps = 20/240 (8%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD ++ RI+EIG VEL++ T R ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPAQGHRIVEIGCVELVNRMVTGRNLHLYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T FL DKP F I F F + AE IAHNA FDV F NAELQ++ + LD + + Sbjct: 60 TTAFLSDKPRFGDIAEAFIQFI--EGAELIAHNASFDVKFFNAELQKVGRKTLDNYCASV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L+ AR P RN L++LC RYGI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 118 TDSLAHARTLFPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK--EELDEHDKTIQTL----GKNAIW 237 N+ + I+L D + + E+L EH+ + L G + +W Sbjct: 178 DVDDNQAGGNR--------IALAAFDASVLPVVAAAGEDLTEHEAYLAALDKAVGGSCLW 229 >gi|126724532|ref|ZP_01740375.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Rhodobacterales bacterium HTCC2150] gi|126705696|gb|EBA04786.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Rhodobacterales bacterium HTCC2150] Length = 230 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 137/240 (57%), Gaps = 18/240 (7%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG D DRI+EIGAVEL ++ T +T+ ++ P R EA ++HG+ Sbjct: 1 MRELVLDTETTGFDPFSGDRIVEIGAVELFNHMPTGKTYHQYINPQ-RAMPAEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL +P F+ I F DF + HNA FD+ F+NAEL + + L + +D Sbjct: 60 GDEFLARQPVFADIAQAFVDFVGTDL--LVIHNASFDMKFLNAELDWLGRAKLPMEQSLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR+K P S L++LC+R+G+ R KHGALLDS +L++VY++ ++GG Q +FG Sbjct: 118 TLAIARKKFPGSPASLDALCRRFGVNNDAREKHGALLDSEILAEVYLE-LIGGRQPDFGL 176 Query: 186 KT------NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 T D F E + R PL RI++EE H + ++ L +W + Sbjct: 177 NTAAAASSGTDAGFSEWRAQ-------PRPNPLAPRISEEEAKAHREFVEKLADGGLWPK 229 >gi|163801804|ref|ZP_02195701.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4] gi|159174312|gb|EDP59116.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4] Length = 238 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 102/241 (42%), Positives = 146/241 (60%), Gaps = 24/241 (9%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ PEA+ Sbjct: 11 RIIVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPEAIG 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 +HGITDEFL DKP +S + EF DF + AE +AHNA FD GF++ E + + DP Sbjct: 70 VHGITDEFLVDKPDYSHVHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEML--DPAIGK 125 Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ +M Sbjct: 126 TDDFCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYL-LMT 184 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236 GG Q + F N+ E + V LK R T +E++ H K ++ L ++I Sbjct: 185 GG-QTSLEFNANKKNGEPEGIRRVQGRKALK-----VLRATADEVEAHQKRLE-LVNDSI 237 Query: 237 W 237 W Sbjct: 238 W 238 >gi|126738511|ref|ZP_01754216.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6] gi|126720310|gb|EBA17016.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6] Length = 242 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 146/245 (59%), Gaps = 20/245 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVEL ++ T +T+ ++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELFNHMPTGKTYHEYINPE-RSMPHEAFGVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F+ + F DF Q+++ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQQPEKGQVTLRDKPVFAKVGQSFLDFV--QDSKLVIHNASFDMKFLNAELDW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L ++ IDTL++AR++ P + L++LC+R+ I S+R+ HGALLDS +L++VY+ Sbjct: 118 MGLPKLPLNQAIDTLAVARKRFPGAPATLDALCRRFQIDNSNRTLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 + ++GG Q +FG T+ +E + + +R PL +R+T+EEL HD ++ +G Sbjct: 178 E-LIGGRQPDFGLSTSTSG--SKEGQVAEDWRPTQRATPLPSRLTQEELSAHDAFVEKMG 234 Query: 233 KNAIW 237 A+W Sbjct: 235 DAALW 239 >gi|209966072|ref|YP_002298987.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW] gi|209959538|gb|ACJ00175.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW] Length = 227 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 139/242 (57%), Gaps = 31/242 (12%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D+ N DR++EIG VEL+++ T RT+ ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGIDALNGDRVVEIGCVELMNHVATGRTYHQYINPE-RDMPIEAFNVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL +P+F+ I F DF Q++ + HNA FDVGF+NAEL R+ L +R ID Sbjct: 60 STEFLSGQPTFAEIVGPFLDFI--QDSPLVIHNATFDVGFLNAELTRLGMRTLPAARAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-------- 177 T+ +ARR+ P + L++LC+R+ I S RS HGALLD+ LL++VY++++ G Sbjct: 118 TVVLARRRFPGAPASLDALCRRFEIDNSARSYHGALLDAQLLAEVYLELLGGRQPDLVLA 177 Query: 178 --GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G+Q F+T+ R +E + P EEL+ H+ ++ Sbjct: 178 PTGAQAAASFRTDRPR--REPRPHAP---------------LPEELEAHEAFLKGFKTPP 220 Query: 236 IW 237 +W Sbjct: 221 LW 222 >gi|54297294|ref|YP_123663.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris] gi|53751079|emb|CAH12490.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris] Length = 233 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 139/232 (59%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTG+ + R+IEIG +EL+D T + F ++L P R+ A ++HGI Sbjct: 1 MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRI 123 + EFL+DKP F I +EF F + +E I HNA FDVGF+N+EL+ + NK D RI Sbjct: 60 STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR KHP RN L++LCKRY I +R HGALLD+ +L+ VY+ M G S + Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 F E + + KT I L KP+ + +EEL +H ++ + K + Sbjct: 176 -FTEVESSLSQSKIKT-QEIKSLSLKKPVIMKANEEELIQHQSFVEFISKKS 225 >gi|304311305|ref|YP_003810903.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1] gi|301797038|emb|CBL45251.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1] Length = 246 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 148/251 (58%), Gaps = 22/251 (8%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+IV D ETTGL+ ++ RIIEIG VEL+D T R + ++ P R A+ +HGI Sbjct: 4 LRQIVLDTETTGLEPAEGHRIIEIGCVELVDRRHTGRHYHQYINPE-RLVDAGAMAVHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLDPSRI 123 T+EFL DKP F+ I F++F N AE + HNA FDVGFIN E + + + + Sbjct: 63 TNEFLADKPKFAEIADAFFEFIN--GAELVIHNAAFDVGFINHEFNLLKRFGTVGEHCSV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR+KHP +N+L++LC+RY I S R HGALLD+ +L+DVY+ M G Q Sbjct: 121 LDTLLMARKKHPGQKNNLDALCRRYEIDNSQRELHGALLDAQILADVYLAMT--GGQTAL 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTLGK----N 234 F + + E + +++ ++R PL R ++ E++ H++ +Q L K N Sbjct: 179 SFSSGD-----EGQSGAASVATVQRFSDNRAPLKVIRASQAEIEAHEQYVQLLDKRSSGN 233 Query: 235 AIWDRYISSNQ 245 ++ +Y S++ Sbjct: 234 TVYRKYSPSSE 244 >gi|52841614|ref|YP_095413.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628725|gb|AAU27466.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 251 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 139/232 (59%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTG+ + R+IEIG +EL+D T + F ++L P R+ A ++HGI Sbjct: 19 MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 77 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRI 123 + EFL+DKP F I +EF F + +E I HNA FDVGF+N+EL+ + NK D RI Sbjct: 78 STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 135 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR KHP RN L++LCKRY I +R HGALLD+ +L+ VY+ M G S + Sbjct: 136 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 193 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 F E + + KT I L KP+ + +EEL +H ++ + K + Sbjct: 194 -FTEVESSLSQSKIKT-QEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 243 >gi|330445182|ref|ZP_08308834.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489373|dbj|GAA03331.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 241 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 89/185 (48%), Positives = 121/185 (65%), Gaps = 12/185 (6%) Query: 2 IRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IVFD ETTG++ + RIIEIGAVE+++ T TF V++ P+ R Sbjct: 1 MKATNQRIIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPD-RPID 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA+ +HGITDEFL KPS++ I EF DF + AE +AHNA FD+GF++ E Q + D Sbjct: 60 PEAIDVHGITDEFLVGKPSYAEIHQEFIDFID--GAELVAHNASFDIGFMDYEFQLMGSD 117 Query: 117 ---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D ++ DTL +A+R P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYL- 176 Query: 174 MMVGG 178 MM GG Sbjct: 177 MMTGG 181 >gi|330878790|gb|EGH12939.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 259 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 101/249 (40%), Positives = 143/249 (57%), Gaps = 15/249 (6%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ + RI+EIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSR--- 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E I +D D +R Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALIGAQDKADITRHCK 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 185 Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRD-KPL-FTRITKEELDEHDKTIQTL----GKNA 235 ++ E I L D KP R ++ EL EH+ + T+ G A Sbjct: 186 LAGNASDGNGSAEGSSNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTIAKATGAPA 245 Query: 236 IWDRYISSN 244 +W + + + Sbjct: 246 LWVQMLEAG 254 >gi|94502173|ref|ZP_01308671.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65] gi|94425698|gb|EAT10708.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65] Length = 237 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 83/180 (46%), Positives = 120/180 (66%), Gaps = 6/180 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR++V D ETTG+ + RIIEIG VEL+ T R + ++ P R+ PEA+++HGIT Sbjct: 1 MRQVVLDTETTGIGDGH-RIIEIGCVELVGRKLTGRHYHQYINPQ-REVDPEAMEVHGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRII 124 DEFL DKP F+ + +EF DF N AE + HNA FDVGF++ E +++ P + ++ Sbjct: 59 DEFLADKPVFAQVANEFLDFIN--GAELVIHNAPFDVGFMDMEFAKLSNFPKTAEVCGVL 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR+ +P RN L++LC+R GI SHR HGALLDS +L+DVY+ M G + ++ Sbjct: 117 DTLTLARKMYPGQRNSLDALCRRLGIDNSHRELHGALLDSEILADVYLLMTGGQTALSLA 176 >gi|77458414|ref|YP_347919.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf0-1] gi|77382417|gb|ABA73930.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens Pf0-1] Length = 252 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 97/248 (39%), Positives = 140/248 (56%), Gaps = 15/248 (6%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ + RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIAVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122 +EFL KP F+ + EF++F N A+ I HNA FDVGFIN E + + D Sbjct: 63 NEFLVGKPRFAEVADEFFEFIN--GAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 121 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLS 180 Query: 183 FGFKTNEDRFFKEEK-KTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKN----A 235 ++ E + I L D+ R T+ EL EH ++ + K+ A Sbjct: 181 LAGNASDGNGTGEGADNSATEIRRLPADRQPGRIIRATEAELAEHQVRLEIIAKSAGAPA 240 Query: 236 IWDRYISS 243 +W + + + Sbjct: 241 LWTQLLEA 248 >gi|254491084|ref|ZP_05104265.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxidans DMS010] gi|224463597|gb|EEF79865.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxydans DMS010] Length = 245 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 143/245 (58%), Gaps = 14/245 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + R+++ D ETTG+ + +D RIIEIG VE+++ T +TF ++ P R A Sbjct: 1 MAELTQKRQVILDTETTGISTADDHRIIEIGCVEMVNRRLTGQTFHQYINPQ-RDIDAGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +++HGIT+EFL DKP F+ I EF F + AE + HNA FDVGFIN EL +++ + Sbjct: 60 IEVHGITNEFLADKPLFTEIAEEFLSFI--EGAELVIHNAPFDVGFINHELAKLDGETRR 117 Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 S ++DTL +AR KHP +N+L++LCKRY + ++R HGALLD+ +L+DVY+ M Sbjct: 118 VETLSTVLDTLKMARDKHPGQKNNLDALCKRYDVNNANRELHGALLDAEILADVYLAMT- 176 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233 G Q++ ED K+ I+ LKR+ + + +EL H ++ + K Sbjct: 177 -GGQVSLTLMAKEDATPKKGDGQA-EITQLKRESLMVLKANDDELAAHQDMLEKVNKASD 234 Query: 234 -NAIW 237 +W Sbjct: 235 GQCVW 239 >gi|148358915|ref|YP_001250122.1| DNA polymerase III subunit epsilon [Legionella pneumophila str. Corby] gi|296106963|ref|YP_003618663.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99 Alcoy] gi|148280688|gb|ABQ54776.1| DNA polymerase III, epsilon subunit [Legionella pneumophila str. Corby] gi|295648864|gb|ADG24711.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99 Alcoy] Length = 233 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 138/232 (59%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTG+ + R+IEIG +EL+D T + F ++L P R+ A ++HGI Sbjct: 1 MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRI 123 + EFL+DKP F I +EF F + +E I HNA FDVGF+N+EL+ + NK D RI Sbjct: 60 STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR KHP RN L++LCKRY I +R HGALLD+ +L+ VY+ M G S + Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 F E + KT I L KP+ + +EEL +H ++ + K + Sbjct: 176 -FTEVESSMSHSKIKT-QEIKSLSLKKPVIMKANEEELIQHQSFVEFISKKS 225 >gi|296284843|ref|ZP_06862841.1| DNA polymerase III epsilon subunit [Citromicrobium bathyomarinum JL354] Length = 240 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 84/180 (46%), Positives = 116/180 (64%), Gaps = 5/180 (2%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTG+D + R++EIG VEL+D T TF + P R EA +HG+ Sbjct: 8 MREIIFDTETTGIDPRQGHRMVEIGCVELVDRMPTGETFHAYYNPE-RDMPAEAEAIHGL 66 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F+ EF DF + +AHNA FD F+NAEL+ ++P+ +R ID Sbjct: 67 SAQFLADKPRFADAVDEFLDFVRDDM--LVAHNAGFDFAFLNAELELCTREPICLTRKID 124 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRK+P ++ L++LC RYG+ SHR HGALLD+ LL+ VYI+ + GG QI G Sbjct: 125 TLEMARRKNPGGKHSLDALCSRYGVDRSHRVFHGALLDAELLAQVYIE-LTGGRQIAMGL 183 >gi|317490808|ref|ZP_07949244.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920355|gb|EFV41678.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] Length = 244 Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 146/243 (60%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+D+FL DKP+F+ I EF +F + AE + HNA FD+GF++ E +++N+D P + Sbjct: 66 HGISDDFLLDKPTFADIADEFLEFI--RGAELVIHNAPFDIGFMDYEFRKLNRDIPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +ARR P RN L++LC RY I + R+ HGALLDS +L+DVY+ M G + Sbjct: 124 FCKITDSLVMARRLFPGKRNSLDALCNRYEIDNTKRTLHGALLDSQILADVYLTMTGGQT 183 Query: 180 QINFGFKTNED--RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234 + F ++ + R E +K V + LK R + EEL EH+ +Q G + Sbjct: 184 SLTFSMESEGEKPRPTGEVQKIVRKMQALK-----VVRASAEELAEHEHRLDLVQKKGGS 238 Query: 235 AIW 237 +W Sbjct: 239 CLW 241 >gi|330829021|ref|YP_004391973.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565] gi|328804157|gb|AEB49356.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565] Length = 244 Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 143/243 (58%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG+++ RIIEIG VE+++ T + V++ P+ R PEA++ Sbjct: 8 RQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHYHVYIKPD-RLVDPEAIQ 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLD 119 +HGITDEFL+DKPSFS I EF +F + AE IAHNA FDV F++ E ++ N D Sbjct: 67 VHGITDEFLRDKPSFSQIADEFLEFI--RGAELIAHNAPFDVSFMDYEFSKLGLNFKTAD 124 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I DTL++AR P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G + Sbjct: 125 ICTITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDK---TIQTLGKN 234 ++N ++NE+ E +I L+ ++P R E H+ +Q G + Sbjct: 185 KLNLATESNEN-----ENNQDTSIRRLESNRPAIKVVRACAEVQALHEARLDLVQKKGGS 239 Query: 235 AIW 237 +W Sbjct: 240 CLW 242 >gi|121605184|ref|YP_982513.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans CJ2] gi|120594153|gb|ABM37592.1| DNA polymerase III, epsilon subunit [Polaromonas naphthalenivorans CJ2] Length = 240 Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 97/238 (40%), Positives = 144/238 (60%), Gaps = 16/238 (6%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL ++N DRIIEIG VEL+ T +L P GR + +ALK+HGI Sbjct: 1 MRQIVLDTETTGLSAENGDRIIEIGCVELVRRKLTGNNKHFYLNP-GRNSHEDALKVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 ++EFLKDKP FS++ E D+ Q AE I HNA FDV F+N EL+ I ++PL +++ Sbjct: 60 SNEFLKDKPKFSAVVDELLDYL--QGAEIIIHNAPFDVSFLNKELEIIGREPLMHCVAKV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L +A+ P RN LN+LC R + S R+ HGALLD+ LL+DVYI + G + + Sbjct: 118 TDSLMMAKEMFPGKRNSLNALCDRLEVDNSGRTLHGALLDAELLADVYINLTRGQNSLMM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237 + + ++ P + L + P+ + +++E+D H+K + TL K + +W Sbjct: 178 DIGSP-----VQTGESEPLVDLRLFELPVLSA-SEQEMDAHEKVLLTLDKASRGKTVW 229 >gi|237746089|ref|ZP_04576569.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS] gi|229377440|gb|EEO27531.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS] Length = 248 Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 100/239 (41%), Positives = 141/239 (58%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL + + DRIIEIG VE+L+ T+ F ++ P R + P+AL +HG+ Sbjct: 1 MRQIVLDTETTGLYANDGDRIIEIGCVEVLNRRVTDHHFHQYINPE-RDSHPDALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F+ I F DF + AE + HNA FDVGF+NAEL R+N P++ S I Sbjct: 60 TTEFLSDKPKFAEIAQAFCDFI--KGAELVIHNAPFDVGFLNAELARLNLPPVEELASCI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR P RN L++LC+R+ I +HR+ HGALLD+ LL++VY+ M G + Sbjct: 118 TDSLLKARDMFPGRRNSLDALCERFEIDNTHRTLHGALLDAELLAEVYLAMTRGQETLEI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-----GKNAIW 237 K +E +K P SL + L T+EEL +H++ + + G +W Sbjct: 178 E-KLTLSAAEEEARKNHPLSSL----RILVLAPTEEELQKHEEVLDDIEKGNKGAPCVW 231 >gi|220934132|ref|YP_002513031.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219995442|gb|ACL72044.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 235 Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 98/241 (40%), Positives = 141/241 (58%), Gaps = 17/241 (7%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N R++V D ETTGL+ ++ RIIEIG VEL+ T RTF +L P+ R+ AL +H Sbjct: 4 NNHRQVVLDTETTGLEPAQGHRIIEIGCVELVGRRITRRTFHHYLQPD-REIDEGALAVH 62 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDP 120 GI++EFL DKP F+ + EF +F + AE + HNA FDVGF++ EL+ ++ D Sbjct: 63 GISNEFLADKPRFADVVDEFLEFI--RGAELVIHNAPFDVGFLDHELKLLDAARGQVTDY 120 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 S I+DTL +ARR HP RN L++LCKRY I S R HGALLD+ +L+DVY+ M G + Sbjct: 121 SSILDTLDLARRMHPGQRNSLDALCKRYQIDNSGRELHGALLDARILADVYLAMTGGQTT 180 Query: 181 INFGFKT----NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236 ++ G + E R E + +P R + R ++ EL H + ++ L + Sbjct: 181 LSLGGEAAGVNGEAR--AESIRRLPE----ARARLRVIRPSEAELQAHTRLLEKLNPPSP 234 Query: 237 W 237 W Sbjct: 235 W 235 >gi|213968849|ref|ZP_03396990.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. tomato T1] gi|301384105|ref|ZP_07232523.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato Max13] gi|302059179|ref|ZP_07250720.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato K40] gi|302135017|ref|ZP_07261007.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926452|gb|EEB60006.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. tomato T1] Length = 259 Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 100/249 (40%), Positives = 143/249 (57%), Gaps = 15/249 (6%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ + RI+EIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSR--- 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + +D D +R Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCK 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 185 Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRD-KPL-FTRITKEELDEHDKTIQTL----GKNA 235 ++ E I L D KP R ++ EL EH+ + T+ G A Sbjct: 186 LAGNASDGNGSAEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTIAKATGAPA 245 Query: 236 IWDRYISSN 244 +W + + + Sbjct: 246 LWVQMLEAG 254 >gi|91223500|ref|ZP_01258765.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|254228411|ref|ZP_04921837.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25] gi|262393546|ref|YP_003285400.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|269966277|ref|ZP_06180366.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] gi|91191586|gb|EAS77850.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|151938999|gb|EDN57831.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25] gi|262337140|gb|ACY50935.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|269829192|gb|EEZ83437.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] Length = 240 Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 96/239 (40%), Positives = 144/239 (60%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ PEA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPEAVE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PL 118 +HGITDEFL DKP ++S+ EF +F + AE +AHNA FD GF++ E ++ + Sbjct: 70 VHGITDEFLVDKPEYASVHQEFLEFI--KGAELVAHNAPFDTGFMDYEFGMLDPNIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLFMT--G 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 Q + F N+ E + + LK R + +EL+ H K ++ L + IW Sbjct: 186 GQTSLEFNANKQEGGVETIRRIEGRKALK-----VLRASADELEAHQKRLE-LVNDCIW 238 >gi|330963305|gb|EGH63565.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. actinidiae str. M302091] Length = 259 Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 100/249 (40%), Positives = 143/249 (57%), Gaps = 15/249 (6%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ + RI+EIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSR--- 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + +D D +R Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCK 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 185 Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRD-KPL-FTRITKEELDEHDKTIQTL----GKNA 235 ++ E I L D KP R ++ EL EH+ + T+ G A Sbjct: 186 LAGNASDGNGSAEGSSNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTIAKATGAPA 245 Query: 236 IWDRYISSN 244 +W + + + Sbjct: 246 LWVQMLEAG 254 >gi|86136750|ref|ZP_01055328.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193] gi|85826074|gb|EAQ46271.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193] Length = 243 Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 144/247 (58%), Gaps = 21/247 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVELL++ T TF V++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPQEAFGVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F+ F DF +++ + HNA FD+ F+N EL R Sbjct: 60 GPDLLEPPQKPEKGQVTLRDKPVFAKFGQAFLDFV--RDSRMVIHNASFDMKFLNFELDR 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L + +DTL++AR++ P S L++LC+R+ I S+R+ HGALLDS +L+DVY+ Sbjct: 118 MGLRTLPMEQALDTLAMARKRFPGSPATLDALCRRFQIDNSNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 + + GG Q +FG TN + V + R PL +R+T +E + H+ ++ +G Sbjct: 178 E-LSGGRQPDFGLSTNAT---AGGGQVVEDWRPAPRHTPLPSRLTAKEAEAHEAFVEKMG 233 Query: 233 KNAIWDR 239 ++A+W++ Sbjct: 234 EDALWNQ 240 >gi|237803575|ref|ZP_04591160.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025557|gb|EGI05613.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae str. 1_6] Length = 257 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 101/251 (40%), Positives = 145/251 (57%), Gaps = 19/251 (7%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ + RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + ++D D +R Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGDQDRSDITRHCS 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G Q + Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTL----GK 233 N + + S ++R KP R ++ EL EH+ + T+ G Sbjct: 184 LSLAGNASDGNGSGEGSGNRGSEIRRLPANRKPCRVIRASESELAEHEVRMSTIAKASGA 243 Query: 234 NAIWDRYISSN 244 +A+W + + + Sbjct: 244 SALWVQMLEAG 254 >gi|331019245|gb|EGH99301.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 259 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 100/249 (40%), Positives = 143/249 (57%), Gaps = 15/249 (6%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ + RI+EIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSR--- 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + +D D +R Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCK 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 185 Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRD-KPL-FTRITKEELDEHDKTIQTL----GKNA 235 ++ E I L D KP R ++ EL EH+ + T+ G A Sbjct: 186 LAGNASDGNGSAEGSGNRGSEIRRLPADRKPCRVIRASESELAEHEVRMTTIAKATGAPA 245 Query: 236 IWDRYISSN 244 +W + + + Sbjct: 246 LWVQMLEAG 254 >gi|28870866|ref|NP_793485.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato str. DC3000] gi|28854115|gb|AAO57180.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. tomato str. DC3000] Length = 257 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 100/249 (40%), Positives = 143/249 (57%), Gaps = 15/249 (6%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ + RI+EIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 7 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 65 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSR--- 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + +D D +R Sbjct: 66 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCK 123 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 124 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 183 Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRD-KPL-FTRITKEELDEHDKTIQTL----GKNA 235 ++ E I L D KP R ++ EL EH+ + T+ G A Sbjct: 184 LAGNASDGNGSAEGSGNRGSEIRRLPADRKPCRVIRASESELAEHEVRMTTIAKATGAPA 243 Query: 236 IWDRYISSN 244 +W + + + Sbjct: 244 LWVQMLEAG 252 >gi|260753374|ref|YP_003226267.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552737|gb|ACV75683.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 234 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/240 (40%), Positives = 140/240 (58%), Gaps = 14/240 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGL N DR++EIG VEL++ +T +F + P R A +HG+ Sbjct: 1 MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPQ-RPMDAVAESIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D FL DKP F+ E F + + +AHNA FD GF+N EL + + +R++D Sbjct: 60 SDAFLADKPLFADKAQELLSFI--KLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR KHP +++ L++LC RYGI SHR KHGALLD+ LL+ +Y++ + GG QI Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVE-LTGGRQIGMAL 176 Query: 186 KTNEDRFFKEEKKTVPN-ISLLKRDK-----PLFTRITKEELDEHDKTIQTLGKNAIWDR 239 N + + + +VPN +S L R+K P + +EL H I + N +W R Sbjct: 177 DDNNGQ--SDGRLSVPNTVSGLPRNKKVKRQPRPHEASPQELLRHGAFIDKI-SNPVWRR 233 >gi|332141113|ref|YP_004426851.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327551135|gb|AEA97853.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 239 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 147/249 (59%), Gaps = 36/249 (14%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D K RIIEIG VE+++ T F V++ P GR EA+++HGI Sbjct: 1 MRQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINP-GRHIEQEAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122 T+EFL DKP+F+ + EF +F + A+ + HNA FDVGF++ E ++PS Sbjct: 60 TNEFLTDKPTFAQVAQEFVNFI--KGAQLVIHNAPFDVGFMDHEF------GMEPSTKGV 111 Query: 123 -------IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL++AR+ HP +N+L++LCKRYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 112 ITNQICDVLDTLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYLLMT 171 Query: 176 VGGSQINF----GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TI 228 G +++ G +T+ + ++KT +K + + +EL +H+ + Sbjct: 172 GGQTKLKLASSGGSETDSTAIRRVQRKT---------NKLKVIKASADELTQHEARLDIV 222 Query: 229 QTLGKNAIW 237 + G +W Sbjct: 223 EKAGGKCLW 231 >gi|254295485|ref|YP_003061508.1| DNA polymerase III subunit epsilon [Hirschia baltica ATCC 49814] gi|254044016|gb|ACT60811.1| DNA polymerase III, epsilon subunit [Hirschia baltica ATCC 49814] Length = 233 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 94/243 (38%), Positives = 150/243 (61%), Gaps = 18/243 (7%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGL +K+ DRIIE+GAVE++D T R F + P R+ S + +++ GI Sbjct: 1 MREIVFDTETTGLSAKDGDRIIELGAVEIVDLLPTGREFHRLIYPE-RQVSEDTIRITGI 59 Query: 66 TDEFLKDKPSFS--SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 TDE LK KP FS S++ EF DF +++ +AHNA+FD GF+N E++R+ R Sbjct: 60 TDEMLKGKPVFSDPSVYKEFLDFI--EDSPLVAHNAEFDRGFLNEEMRRVGGPDFPKERC 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL++AR K P + L++LCKR+ I+++ R H A++DS LL+ VY+++ GG +F Sbjct: 118 VDTLALAREKFPGASATLDALCKRFDISLAKRDVHTAVVDSQLLASVYLELR-GGRAHSF 176 Query: 184 GF----KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 F +++ + FK ++ +R K L + +T+EE H I T + +W++ Sbjct: 177 EFENEGQSDAEVAFKRTQRR-------QRPKKLRSFLTEEENAAHQSFIATFDETPVWNK 229 Query: 240 YIS 242 ++ Sbjct: 230 ILT 232 >gi|241761459|ref|ZP_04759547.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374366|gb|EER63863.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 234 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/240 (40%), Positives = 140/240 (58%), Gaps = 14/240 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGL N DR++EIG VEL++ +T +F + P R A +HG+ Sbjct: 1 MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPE-RPMDAVAESIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D FL DKP F+ E F + + +AHNA FD GF+N EL + + +R++D Sbjct: 60 SDAFLADKPLFADKAQELLSFI--KLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR KHP +++ L++LC RYGI SHR KHGALLD+ LL+ +Y++ + GG QI Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVE-LTGGRQIGMAL 176 Query: 186 KTNEDRFFKEEKKTVPN-ISLLKRDK-----PLFTRITKEELDEHDKTIQTLGKNAIWDR 239 N + + + +VPN +S L R+K P + +EL H I + N +W R Sbjct: 177 DDNNGQ--SDGRLSVPNTVSGLPRNKKVKRQPRPHEASPQELLRHGAFIDKI-SNPVWRR 233 >gi|163738000|ref|ZP_02145416.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis BS107] gi|163742604|ref|ZP_02149990.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis 2.10] gi|161384189|gb|EDQ08572.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis 2.10] gi|161388616|gb|EDQ12969.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis BS107] Length = 245 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 145/246 (58%), Gaps = 19/246 (7%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVELL++ T TF V++ P R +A K+HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPQ-RSMPQDAFKVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F+ + +F DF ++++ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQQPGPGAVTLRDKPVFAKVGQKFLDFV--RDSKMVIHNAAFDMKFLNAELDW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L + +DTL+IAR++ P S L++LC+R+ I S+R+ HGALLDS +L+DVY+ Sbjct: 118 MGLPKLPMDQAVDTLAIARKRFPGSPATLDALCRRFNIDNSNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 + ++GG Q +FG + D+ T + R PL +R+T++E + H + +G Sbjct: 178 E-LIGGRQPDFGLSASNDKSSSGSVVTD-DWRPTARPSPLPSRLTEQEQEAHANFVAKMG 235 Query: 233 KNAIWD 238 A+W+ Sbjct: 236 DAALWN 241 >gi|149908875|ref|ZP_01897535.1| DNA polymerase III subunit epsilon [Moritella sp. PE36] gi|149808149|gb|EDM68090.1| DNA polymerase III subunit epsilon [Moritella sp. PE36] Length = 245 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/239 (40%), Positives = 146/239 (61%), Gaps = 19/239 (7%) Query: 8 RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IVFD ETTG++ R+IEIG +EL++ T RT+ V++ P+ R PEA+ Sbjct: 14 RVIVFDTETTGMNMGAGGVHIGHRVIEIGCIELINRRPTGRTYHVYIKPD-RLVDPEAIA 72 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PL-- 118 +HGITDEFL+DKPSF++I EF F AE +AHNA FD F++ E + +NK P Sbjct: 73 VHGITDEFLQDKPSFATIADEFIAFI--VGAELVAHNASFDTNFLDHEFRLLNKGLPATK 130 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + +I DTL+IA++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 131 EICKITDTLAIAKKLFPGKRNNLDVLCTRYGIDNSHRTLHGALLDAEILADVYLFMTGGQ 190 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 +++N + + + ++ + + LK + T +EL HD+ + +G +A+W Sbjct: 191 TKLNLS-QDSANSQGGGIRRVAASRAPLK-----VVQATDDELKAHDERLGIVG-DALW 242 >gi|71276291|ref|ZP_00652569.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Dixon] gi|71898480|ref|ZP_00680652.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|170730488|ref|YP_001775921.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M12] gi|71162899|gb|EAO12623.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Dixon] gi|71731793|gb|EAO33852.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|167965281|gb|ACA12291.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 239 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 143/243 (58%), Gaps = 15/243 (6%) Query: 4 KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +NK R+IV D ETTGL+ SK +RI+EIGAVELLD + F +L P+ S A ++ Sbjct: 2 RNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFESG-AQEV 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119 G+T EFL DKP FS I EF + N AE I HNA FD+GF++ EL R+ D Sbjct: 61 TGLTMEFLADKPEFSMIADEFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKITD 118 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++DTL +AR ++P RN L++LCKR G+ +HR HGALLD+ +L+DVYI + G Sbjct: 119 RASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTCGQE 178 Query: 180 QINFGF-KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--- 235 +I F +++ +P++ L +P +++ EL+ H+ + L K A Sbjct: 179 EIGFALPESSCGGVDAASAAFMPDVLL---TRPCVV-VSQSELEAHEARLAKLRKIAGHV 234 Query: 236 IWD 238 +WD Sbjct: 235 LWD 237 >gi|85707524|ref|ZP_01038599.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius sp. 217] gi|85667957|gb|EAQ22843.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius sp. 217] Length = 231 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/233 (40%), Positives = 141/233 (60%), Gaps = 8/233 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + ++ DRI+EIGAVEL ++ T RTF ++ P R A +HG+ Sbjct: 1 MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQ-RAMPEAAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL++KP F+ I EF DF +A+ + HNA FD+ F+NAEL + L + ID Sbjct: 60 GDDFLRNKPLFAEIAQEFLDFV--LDAKLVIHNAAFDMKFLNAELGWLKLPHLPWEQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR+K P S L++LC+R+ I S R+ HGALLDS +L++VY++ ++GG Q +F Sbjct: 118 TLAIARQKFPGSPASLDALCRRFQIDNSARTLHGALLDSEILAEVYLE-LIGGRQPDFAL 176 Query: 186 KTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + + T P++ R PL R+T+ E H + +G+ A+W Sbjct: 177 SSTSSTRSSD--MTEPDVWRPHPRPTPLAPRLTESEAAAHQAFVARMGEAALW 227 >gi|59712542|ref|YP_205318.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114] gi|59480643|gb|AAW86430.1| DNA polymerase III epsilon subunit [Vibrio fischeri ES114] Length = 243 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/239 (40%), Positives = 148/239 (61%), Gaps = 16/239 (6%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++ + RI+EIGAVE+++ T F V++ P+ R EA+ Sbjct: 10 RIIVLDTETTGMNFSGGPVYEGHRIVEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAID 68 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLD 119 +HGITDEFL DKP + I EF +F + AE +AHNA FDVGF++ E ++NK D Sbjct: 69 VHGITDEFLYDKPEYKDIHDEFLEFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIGTTD 126 Query: 120 P-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +I DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ +M GG Sbjct: 127 QYCKITDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYL-LMTGG 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 Q + F + E+ +E +T+ ++ ++ + R T +EL+ H+K + +G +W Sbjct: 186 -QTSLSFSSGENSSDSDE-ETIKRLNSGRKGLKVL-RATADELEAHEKRLDIVGDACLW 241 >gi|332993503|gb|AEF03558.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2] Length = 238 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 93/239 (38%), Positives = 142/239 (59%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D K R+IEIG VEL++ T F V++ P GR+ EA+ +HGI Sbjct: 1 MRQIVLDTETTGIDPKEGHRVIEIGCVELVNRKLTGNHFHVYINP-GRQIEQEAIDVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD----PLDPS 121 T+EFL DKP+F + +F +F + A+ + HNA FDVGF++ E K D Sbjct: 60 TNEFLTDKPTFRDVAEDFVNFI--RGAQLVIHNAPFDVGFMDHEFGMEPKTRGVITKDIC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL++AR+ HP +N+L++LCKRYGI SHR HGALLD+ +L+DVY+ M G +++ Sbjct: 118 SVLDTLAVARKMHPGQKNNLDALCKRYGIDNSHRELHGALLDAEILADVYLLMTGGQTKL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAIW 237 N K + + ++ N + LK + + +EL +H+ ++ G +W Sbjct: 178 NLASKGSGENQSDALRRLNRNGNKLK-----VIKASADELAQHESRLDIVEKAGGKCLW 231 >gi|89052685|ref|YP_508136.1| DNA polymerase III, epsilon subunit [Jannaschia sp. CCS1] gi|88862234|gb|ABD53111.1| DNA polymerase III epsilon subunit [Jannaschia sp. CCS1] Length = 231 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 138/237 (58%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGL---DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 MR+IV D ETTGL D RI+EIGAVE+ + T +T+ ++ P R EA +H Sbjct: 1 MREIVLDTETTGLNPYDMPRHRIVEIGAVEIFNQVPTGKTYHQYIQPE-RDMPKEAFDVH 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI ++FL DKP F+ I +F DF + + HNA+FD+ F+NAEL+ K L + Sbjct: 60 GIGEDFLADKPIFADIAQDFLDFVG--GDQMVIHNAEFDMRFLNAELEWAGKHALPNDQA 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL IAR+K P S L++LC+R+GI S R KHGALLDS +L++VY++ + GG Q +F Sbjct: 118 LDTLKIARQKFPGSPASLDALCRRFGIDNSAREKHGALLDSEILAEVYLE-LTGGKQPDF 176 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 G ++ +++ + N R L TR++ E H + LG +W ++ Sbjct: 177 GLSQSKSTPTQQQDE---NWRPRPRPSALPTRLSDVEKAAHAAFVDALGDQTVWSKF 230 >gi|15838748|ref|NP_299436.1| DNA polymerase III subunit epsilon [Xylella fastidiosa 9a5c] gi|9107294|gb|AAF84956.1|AE004030_2 DNA polymerase III, epsilon chain [Xylella fastidiosa 9a5c] Length = 239 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 100/246 (40%), Positives = 141/246 (57%), Gaps = 21/246 (8%) Query: 4 KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +NK R+IV D ETTGL+ SK +RI+EIGAVELLD + F +L P+ S A ++ Sbjct: 2 RNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFESG-AQEV 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119 G+T EFL DKP FS I EF + N AE I HNA FD+GF++ EL R+ D Sbjct: 61 TGLTMEFLADKPEFSMIADEFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKITD 118 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++DTL +AR ++P RN L++LCKR G+ +HR HGALLD+ +L+DVYI + G Sbjct: 119 RASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQE 178 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR----ITKEELDEHDKTIQTLGKNA 235 +I F + + V S+ L TR +++ EL+ H+ + L K A Sbjct: 179 EIGFALP-------ESSRGGVDAASVAFMPDVLLTRPCVVVSQSELEAHEARLAKLRKIA 231 Query: 236 ---IWD 238 +WD Sbjct: 232 GHVLWD 237 >gi|331007390|ref|ZP_08330576.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989] gi|330418798|gb|EGG93278.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989] Length = 239 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 98/247 (39%), Positives = 143/247 (57%), Gaps = 28/247 (11%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ SK RIIEIG VEL + T R + ++ P R+ +A+++HGI Sbjct: 1 MRQIVLDTETTGLEPSKGHRIIEIGCVELENRKLTGRHYHQYIQPE-REIEAQAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPS 121 T+E+LK KP+F I EF F + AE I HNA FDVGFIN EL + ++ Sbjct: 60 TNEYLKGKPTFVQIMDEFMAFVD--GAELIIHNAPFDVGFINNELAKYGDKKYQNITHYC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR+KHP +N+L++LCKRYG+ S R HGALLDS +L+DVY+ +M GG + Sbjct: 118 GVIDTLVMARQKHPGQKNNLDALCKRYGVDNSQRDLHGALLDSEILADVYL-LMTGGQRA 176 Query: 182 NFGFKTNEDRFFKEEKKT-------VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 + + + T VPN+ +++ + EEL +H++ + + K Sbjct: 177 LSLSSASSEDDSGSRQVTGIRRLAEVPNLPIIQ--------ASPEELAQHEQKLAAIDKA 228 Query: 234 ---NAIW 237 +W Sbjct: 229 SQGQCVW 235 >gi|254462819|ref|ZP_05076235.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium HTCC2083] gi|206679408|gb|EDZ43895.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium HTCC2083] Length = 224 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/229 (39%), Positives = 137/229 (59%), Gaps = 8/229 (3%) Query: 12 FDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ETTG D + DRI+EIGAVEL++ T RT+ ++ P R +A ++HG+ D+FL Sbjct: 1 MDTETTGFDPQQGDRIVEIGAVELINQMPTGRTYHQYINPE-RAMPDDAFQVHGLGDDFL 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +DKP F I EF DF + + HNA FD+ F+NAEL +N L + +DTL+IA Sbjct: 60 RDKPVFKQIAQEFLDFVKDDTM--VIHNASFDMKFLNAELGWLNMKQLPMEQALDTLAIA 117 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R++ P S L++LC+R+ I S+R+ HGALLDS +L++VY++++ GG Q Sbjct: 118 RKRFPGSPASLDALCRRFNIDNSNRTLHGALLDSEILAEVYLELL-GGRQPGLVLANTGG 176 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 ++T KR PL +RIT+EE H ++ LG++A+W + Sbjct: 177 SASGGSEET---WRASKRPTPLPSRITEEEAKAHTAFVEKLGEDALWSK 222 >gi|294675627|ref|YP_003576242.1| DNA polymerase III subunit epsilon [Rhodobacter capsulatus SB 1003] gi|294474447|gb|ADE83835.1| DNA polymerase III, epsilon subunit [Rhodobacter capsulatus SB 1003] Length = 231 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 84/180 (46%), Positives = 123/180 (68%), Gaps = 4/180 (2%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + S+ RI+EIGAVEL+++ T RT+ ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGFEPSEGHRIVEIGAVELMNHVPTGRTYHQYINPE-RAMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F +I +F DF + +++ + HNA FD+ F+NAEL + K L R +D Sbjct: 60 GDDFLRDKPKFGAIAQDFLDFIGD-DSKLVIHNAAFDMKFLNAELGWVQKPLLPMDRALD 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++ARRK P S L++LC+R+GI S R+ HGALLDS +L++VY++ ++GG Q FG Sbjct: 119 TLAMARRKFPGSPATLDALCRRFGIDNSARTLHGALLDSEILAEVYLE-LIGGRQPGFGL 177 >gi|254786149|ref|YP_003073578.1| DNA polymerase III subunit epsilon [Teredinibacter turnerae T7901] gi|237685417|gb|ACR12681.1| DNA polymerase III, epsilon subunit [Teredinibacter turnerae T7901] Length = 239 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 98/242 (40%), Positives = 143/242 (59%), Gaps = 19/242 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VEL + T + F ++ P+ R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEPEQGHRIIEIGCVELFNRKLTGKHFHQYIRPD-REIDEGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122 T+EFL DKP F+ I +F F +AE + HNA FDVGF++ EL+ +N+ L P R Sbjct: 60 TNEFLADKPVFAQIADDFLTFIG--DAELVIHNAPFDVGFLDHELRLLNRG-LAPIRERC 116 Query: 123 -IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL ARRKHP +N+L++LCKRY + S R HGALLD+ +L+DVY+ M G + + Sbjct: 117 GVLDTLVYARRKHPGQKNNLDALCKRYMVDNSQRDLHGALLDAEILADVYLAMTGGQTAL 176 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTL----GKNA 235 G + + E++ + L D+P R EE++ H + TL G N Sbjct: 177 ALGGQQGDGSGGDGEEQIIR----LSADRPRLKVLRANDEEIEAHKAKLATLDKASGGNC 232 Query: 236 IW 237 +W Sbjct: 233 LW 234 >gi|163732957|ref|ZP_02140401.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149] gi|161393492|gb|EDQ17817.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149] Length = 228 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 147/232 (63%), Gaps = 8/232 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D ++ DRI+EIGAVEL+ + T +T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGKTYHQYINPE-RMMPDEAFQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP F+ + F DF +A+ + HNA FD+ F+NAEL+ +N + + ID Sbjct: 60 GDEFLRDKPKFAEVGQAFLDFIG--DAKLVIHNAAFDIKFLNAELKWMNLPQIPWEQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++ P S L++LC+R+GI + R+ HGALLDS +L++VY++ ++GG Q +FG Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNASRTLHGALLDSEILAEVYLE-LIGGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 K T + + R PL +R+T+EE H + + LG +A+W Sbjct: 177 SNIPQ---KSAGDTSVDWTPRPRPTPLPSRMTEEEAAAHAEFVAKLGDDAVW 225 >gi|119476004|ref|ZP_01616356.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2143] gi|119450631|gb|EAW31865.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2143] Length = 236 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 100/234 (42%), Positives = 140/234 (59%), Gaps = 14/234 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGL+ S+ RIIEIG VEL+D T R + ++ P R+ A+++HGI Sbjct: 1 MRQVVLDTETTGLEPSQGHRIIEIGCVELVDRKLTGRHYHQYINPK-REIDTGAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSR-- 122 T+EFL DKP FS + EF DF AE I HNA FD+GFIN+E + ++ K P Sbjct: 60 TNEFLADKPLFSQVAQEFLDFVT--GAELIIHNAPFDIGFINSEFKLLDSKSPGTMESYC 117 Query: 123 -IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR+KHP RN L++LC RY + S R HGALLDS +L+DVY+ M G +++ Sbjct: 118 GVVDTLVMARQKHPGQRNSLDALCSRYEVDNSQRDLHGALLDSEILADVYLLMTGGQTKL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDK-PL-FTRITKEELDEHDKTIQTLGK 233 NE+ + NI L ++ PL EEL EH++ +Q + K Sbjct: 178 LLAGDDNEEGSGHSDN----NIRRLSTNRQPLKIILANDEELAEHEERMQKIDK 227 >gi|293603370|ref|ZP_06685798.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter piechaudii ATCC 43553] gi|292818280|gb|EFF77333.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter piechaudii ATCC 43553] Length = 239 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 134/240 (55%), Gaps = 19/240 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD ++ RI+EIG VE+++ T ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPAQGHRIVEIGCVEMVNRMSTGNNLHIYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ + EF F Q AE IAHNA FDV F NAEL + + P+ + Sbjct: 60 TTEFLSDKPRFADVVDEFVKFI--QGAELIAHNAAFDVKFFNAELAKTGRGPITEYCETV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR P RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL----GKNAIW 237 N + I L K D + + +EL EH+ + L G +W Sbjct: 178 DVDDN-------DGAGSDGIVLAKFDASGLVVIKAADDELAEHEAYLAALDKSVGGECVW 230 >gi|94496604|ref|ZP_01303180.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58] gi|94423964|gb|EAT08989.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58] Length = 230 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/232 (38%), Positives = 134/232 (57%), Gaps = 7/232 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTG D + DR++EIG +EL++ T RTF + P R A +HG+ Sbjct: 1 MREIIFDTETTGFDPASGDRMVEIGCIELVNRVPTGRTFHAYYHPE-RDMPAAAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL P FS E DF +++ +AHNA+FD GF+N EL + R+ID Sbjct: 60 SADFLAKHPVFSLGALELLDFL--EDSPLVAHNARFDFGFLNHELTLCGHPQVGMHRMID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IAR+ HP +++ L++LC RYGI SHR KHGALLD+ LL+ +YI+ + GG QI G Sbjct: 118 TVAIARQLHPGAKHSLDALCTRYGIDRSHRVKHGALLDAELLAQLYIE-LTGGRQIGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E + + T + R +F + +EL+ H + TL + +W Sbjct: 177 AQEEAKEIVRVELTESPVVRPVRPARVFM-ASAQELERHAAFVATLDRP-LW 226 >gi|119898345|ref|YP_933558.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] gi|119670758|emb|CAL94671.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 239 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/230 (41%), Positives = 136/230 (59%), Gaps = 12/230 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR+IEIG VEL++ S T R F V++ P+ R EA+ +HGI Sbjct: 1 MRQIVLDTETTGLDWRTGDRVIEIGCVELVNRSLTGRHFHVYINPD-RGIDAEAVAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T+EFL DKP F+ I F DF ++AE + HNA FDVGF+N EL + + LD + + Sbjct: 60 TEEFLADKPRFAGIVEAFEDFV--RDAELVIHNANFDVGFLNCELGLLGRPKLDVLCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +A+ ++P + L++LC RY I HR+ HGALLD+ LL++VY+ M G Q + Sbjct: 118 IDTLRMAKEQNPGKKASLDALCDRYEIDNGHRTLHGALLDAELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 +E + E +P + R R T+ E + H + + K Sbjct: 176 MIALDEPAPGQVETDGLP----VMRVGVKVVRATEAECEAHAANLADIAK 221 >gi|292493431|ref|YP_003528870.1| DNA polymerase III subunit epsilon [Nitrosococcus halophilus Nc4] gi|291582026|gb|ADE16483.1| DNA polymerase III, epsilon subunit [Nitrosococcus halophilus Nc4] Length = 242 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 138/240 (57%), Gaps = 14/240 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K RIIEIG VEL++ +T +TF +L P R+ ALK+HG+ Sbjct: 1 MRQIILDTETTGLEPKEGHRIIEIGGVELINRRRTGQTFHCYLNPE-RRVDEGALKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS---R 122 ++EFL DKP F + EF F E AE + HNA FDVGF++ EL + S + Sbjct: 60 SNEFLSDKPRFVEVAEEFLAFIRE--AELVIHNAPFDVGFLDHELSLLGSQWGKVSLYCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR++HP +N L++LCKRYG+ S R HGALLD+ +L+ VY+ M G + ++ Sbjct: 118 VLDTLVLARQRHPGQKNSLDALCKRYGVDNSRRDLHGALLDAEILAGVYLAMTGGQASLS 177 Query: 183 F-GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237 G+ + + E K P + KR R ++EE H + + G +W Sbjct: 178 LRGYGGEDSQSQPGEGKYRPVAA--KRPPLKVVRASEEERSAHQARLAAIDKVSGGACLW 235 >gi|90021666|ref|YP_527493.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40] gi|89951266|gb|ABD81281.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40] Length = 238 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 138/239 (57%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ RIIEIG VEL++ T R + ++ P R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPE-REIDEGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122 T+EFL DKP F I EF F + AE + HNA FDVGF+N E + + D Sbjct: 60 TNEFLADKPVFKDIADEFMAFVD--GAELVIHNAPFDVGFLNHEFNLLGRGSTVINDRCS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL++AR KHP +N+L++LCKRYG S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 ILDTLALARNKHPGQKNNLDALCKRYGADNSARDLHGALLDAEILADVYLLMTGGQTNLA 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237 G + + + +S ++ P+ R + EEL H+K + + G +W Sbjct: 178 LG-GAGSSSGMDDGGEELVRVSADRKPLPII-RASAEELALHEKKLAEIDKASGGECLW 234 >gi|163854939|ref|YP_001629237.1| DNA polymerase III subunit epsilon [Bordetella petrii DSM 12804] gi|163258667|emb|CAP40966.1| DNA polymerase III, epsilon chain [Bordetella petrii] Length = 241 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 95/238 (39%), Positives = 137/238 (57%), Gaps = 15/238 (6%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD S+ RI+EIG VE+++ T ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPSQGHRIVEIGCVEIVNRVVTGNHLHIYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ + +F +F Q AE IAHNA FDV F NAEL I + L + + Sbjct: 60 TTEFLADKPRFADVAQQFLEFI--QGAELIAHNAAFDVKFFNAELSMIGRGDLSQYCALV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR +P RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 118 TDSLQHARTLYPGKRNSLDALCDRHGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237 + S+L P+ T +EL EH++ + +L G +W Sbjct: 178 DVDDASQGGGAGIALGAFDSSVL----PVLAA-TADELAEHEEYLASLDKSVGGACVW 230 >gi|42520014|ref|NP_965929.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034422|ref|ZP_01314429.1| hypothetical protein Wendoof_01000768 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|42409751|gb|AAS13863.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 231 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 145/239 (60%), Gaps = 11/239 (4%) Query: 4 KNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 ++K+R+IV D ETTGLD+++ RIIEIG VEL++ T + F +L P R + K+ Sbjct: 2 ESKLREIVLDTETTGLDTESGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFKI 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++EFL+DKP FS + EF DF + N + HNA+FDV F+N EL ++N + R Sbjct: 61 HGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELSKLNARLISSDR 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+K S LN+LCKR+ I++ +R HGAL+D+ LL+ VY+++ G Sbjct: 119 VLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFL 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F + N+D + V N++ P EE+DEH K + + N +W++YI Sbjct: 179 FDNECNQDSNSTFVQHKVRNLT------PREHLPNSEEIDEHKKLLDKIN-NTLWNKYI 230 >gi|330503134|ref|YP_004380003.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] gi|328917420|gb|AEB58251.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] Length = 252 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 95/235 (40%), Positives = 133/235 (56%), Gaps = 12/235 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ + RIIEIG VELL T R F V+L P+ R+ A+ +HGIT Sbjct: 9 RYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPD-REIDEGAIAVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122 +E++ DKP F + EF++F + A+ I HNA FDVGFIN E + + D D Sbjct: 68 NEYVADKPRFREVADEFYEFI--KGAQLIIHNAAFDVGFINNEFALLGQSERADVSDYCS 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR +HP RN L++LCKRYG+ S+R HGALLDS +L+DVY+ M G Q N Sbjct: 126 VLDTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLAMT--GGQTN 183 Query: 183 FGFKTNEDRFFKEEKKTVPNISLL--KRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + ++ I L R + R ++EEL H + + K+A Sbjct: 184 LSLAGDGADGDGSGRQQATPIRRLDPSRARTRVIRASEEELAAHMARLAVIEKSA 238 >gi|315634676|ref|ZP_07889960.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter segnis ATCC 33393] gi|315476624|gb|EFU67372.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter segnis ATCC 33393] Length = 253 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 97/251 (38%), Positives = 150/251 (59%), Gaps = 21/251 (8%) Query: 2 IRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 I+ N R+IV D ETTG++ + IIEIGAVE+++ T F +++ PN R Sbjct: 3 IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA+K+HGITDE L DKP FS I +EF ++ + AE + HNA FDVGF++ E ++N Sbjct: 62 PEAIKVHGITDEMLADKPDFSQIANEFIEYI--KGAELLIHNAPFDVGFMDYEFAKLNL- 118 Query: 117 PL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P+ D ++ DTL++AR+ +P +N+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 119 PIKTNDICQVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLA 178 Query: 174 MMVGGSQINFGFKTNEDRFFKE-EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + + F NE ++ ++ + + + L T T+EEL H + ++ + Sbjct: 179 MTGGQTSL---FDENESEIIQQVNEQQIQSAVAFSHNLRLLTP-TEEELQAHLEYLKLIN 234 Query: 233 K----NAIWDR 239 K N +W R Sbjct: 235 KKSKDNCLWTR 245 >gi|58696733|ref|ZP_00372277.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58698126|ref|ZP_00373049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225629990|ref|YP_002726781.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi] gi|58535372|gb|EAL59448.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58537085|gb|EAL60207.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila simulans] gi|225591971|gb|ACN94990.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi] Length = 231 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 145/239 (60%), Gaps = 11/239 (4%) Query: 4 KNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 ++K+R++V D ETTGLD+++ RIIEIG VEL++ T + F +L P R + K+ Sbjct: 2 ESKLRELVLDTETTGLDTESGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFKI 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++EFL+DKP FS + EF DF + N + HNA+FDV F+N EL ++N + R Sbjct: 61 HGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELSKLNAGLISSDR 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+K S LN+LCKR+ I++ +R HGAL+D+ LL+ VY+++ G Sbjct: 119 VLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFL 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F + N+D + V N++ P EE+DEH K + + N +W++YI Sbjct: 179 FDNECNQDSNSTFVQHKVRNLT------PREHSPNSEEIDEHKKLLDKIN-NTLWNKYI 230 >gi|317402511|gb|EFV83078.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54] Length = 240 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 135/240 (56%), Gaps = 19/240 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD ++ RI+EIG VEL++ T ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPAQGHRIVEIGCVELVNRMATGNNLHIYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ + EF F Q AE IAHNA FDV F NAEL + + P+ + + Sbjct: 60 TTEFLSDKPRFAEVADEFVKFI--QGAELIAHNAAFDVKFFNAELAKTGRGPITEYCATV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR P RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTL----GKNAIW 237 N + + L + D + ++ EL EH+ + L G +W Sbjct: 178 DVDDN-------DTGAGGGVVLARFDASGLPVVKASEAELAEHETYLAALDKSVGGECVW 230 >gi|300312711|ref|YP_003776803.1| DNA polymerase III subunit epsilon [Herbaspirillum seropedicae SmR1] gi|300075496|gb|ADJ64895.1| DNA polymerase III, epsilon subunit, protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 136/238 (57%), Gaps = 15/238 (6%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL +N +RI+EIG VE+L+ + + ++ P R + AL +HG+ Sbjct: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123 T EFL DKP+F I +EF D+ + A+ I HNA FDVGF++AEL + P I Sbjct: 60 TTEFLADKPTFKQIAAEFLDYV--RGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +D+L +A+ HP RN L++LC RYGI+ +HR HGALLD+ LL++VY+ M G + + Sbjct: 118 VDSLQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237 ED E K + L + + ++EEL H+ + L K A +W Sbjct: 178 DLGAEEDVSEGEGK-----LELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVW 230 >gi|183601084|ref|ZP_02962577.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827] gi|188019425|gb|EDU57465.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827] Length = 253 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 97/244 (39%), Positives = 147/244 (60%), Gaps = 22/244 (9%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P+ R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119 HGI+DEFL+DKP F+ I EF +F + AE I HNA FD+GF++ E ++NKD D Sbjct: 66 HGISDEFLQDKPVFADIADEFIEFI--RGAELIIHNAPFDIGFMDYEFSKLNKDIPPTAD 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN+L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCQITDSLVMARQIFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILADVYLAMTGGQT 183 Query: 180 QINFGFK--TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GK 233 + F + T+ + + +E ++ +S L+ T EEL EH+K + + GK Sbjct: 184 SLAFSMEADTSNESYVEEVQRIDRPVSGLR-----VLYATDEELIEHEKRLDIVDKKGGK 238 Query: 234 NAIW 237 +W Sbjct: 239 PCLW 242 >gi|144899676|emb|CAM76540.1| DNA polymerase III, epsilon subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 228 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 95/234 (40%), Positives = 141/234 (60%), Gaps = 10/234 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D RI+EIG VEL ++ T + + ++ P R EA K+HG+ Sbjct: 1 MREIVLDTETTGFDPLTGHRIVEIGCVELFNHLPTGKVYHQYVNPE-RDMPEEAFKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +++FL DKP F+ I ++F DF +A + HNA+FD+ FINAEL R+ PL SR ID Sbjct: 60 SEQFLSDKPVFAEIVADFMDFIG--DAILVIHNAEFDMRFINAELSRLGFQPLPMSRSID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+++AR+K P ++ +L++LC+R+ I +HRS HGALLDS LL++VY++ ++GG Q Sbjct: 118 TVAMARKKFPGAQANLDALCRRFEIDNTHRSFHGALLDSELLAEVYLQ-LIGGRQPG--- 173 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + P + +KR+ P EEL+ H + L K A+W R Sbjct: 174 LELGLLGGNGKGGGGPVLERVKRE-PRPHAALPEELEAHAAFVGKL-KKALWLR 225 >gi|330810139|ref|YP_004354601.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378247|gb|AEA69597.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 253 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 96/248 (38%), Positives = 138/248 (55%), Gaps = 15/248 (6%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ + RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122 +EFL KP F+ + EF++F Q A+ I HNA FDVGFIN E + + D Sbjct: 63 NEFLVGKPRFAEVADEFFEFI--QGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 121 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLS 180 Query: 183 FGFKTNEDRFFKE-EKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKN----A 235 ++ E I L D+ R ++ +L EH ++ + K+ A Sbjct: 181 LAGNASDGNGTGEGSGNQATEIRRLPADRQPSRIIRASESDLAEHAARLEAIAKSAGAPA 240 Query: 236 IWDRYISS 243 +W + S Sbjct: 241 LWTQLAES 248 >gi|262404569|ref|ZP_06081124.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] gi|262349601|gb|EEY98739.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] Length = 247 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 85/189 (44%), Positives = 123/189 (65%), Gaps = 12/189 (6%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 +HGITDEFL+DKP + + EF DF + AE +AHNA FDVGF++ E ++ + Sbjct: 70 VHGITDEFLRDKPEYKQVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGSVIKTT 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKT 187 + + F T Sbjct: 188 TSLQFSAST 196 >gi|114798147|ref|YP_758739.1| DNA polymerase III subunit epsilon [Hyphomonas neptunium ATCC 15444] gi|114738321|gb|ABI76446.1| DNA polymerase III, epsilon subunit [Hyphomonas neptunium ATCC 15444] Length = 232 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 92/235 (39%), Positives = 144/235 (61%), Gaps = 13/235 (5%) Query: 6 KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 ++R+I FD ETTGL+ ++ DRIIEIGAVE++++ T +TF+ + P G S +++ G Sbjct: 4 RVREIAFDTETTGLNPNEGDRIIEIGAVEMINHIPTGKTFRRLINP-GMAVSEATIRITG 62 Query: 65 ITDEFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 ITD+ L+DKP F I F +F +A +AHNA FD GF+N ELQR +D + R Sbjct: 63 ITDDHLRDKPPFEHPDIIDAFLEFTG--DAIIVAHNASFDRGFLNMELQRCGRDIIPEDR 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +DT+ +AR+++P + L++LCKR+ I++ R+ HGALLDS LL+ VY++++ GG Sbjct: 121 WVDTVQMARKRYPGAPASLDALCKRFDISLESRTFHGALLDSQLLASVYLELL-GGRARA 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 F F+ E P + +R PL + +T E H + ++ LG +A+W Sbjct: 180 FSFEPT----LGGEGYQRP--AARQRPAPLASLVTDAERAAHAELVEKLGADALW 228 >gi|114571517|ref|YP_758197.1| DNA polymerase III subunit epsilon [Maricaulis maris MCS10] gi|114341979|gb|ABI67259.1| DNA polymerase III, epsilon subunit [Maricaulis maris MCS10] Length = 230 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 94/232 (40%), Positives = 133/232 (57%), Gaps = 9/232 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD + DR+ E+G VE++D+ T +TF ++ P R E +++ G+ Sbjct: 1 MREIVFDTETTGLDPNTGDRVTELGCVEIIDFIPTGKTFHAYVNPQ-RSVPKEVVEITGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F + +F +F +A +AHNA FD GFIN EL R+ D R D Sbjct: 60 TTEFLADKPLFDEVGPQFVEFVG--DATMVAHNAPFDRGFINMELARLGLDIYPDDRFKD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T IAR K P S L++LCKR+ I++ R KHGAL+DS LL++VY+++M G ++ Sbjct: 118 TARIARAKFPGSYVSLDALCKRFDISLDTRDKHGALIDSLLLAEVYLELMGGRTR---AL 174 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + K P S R +PL R T E H + +G+NA+W Sbjct: 175 DLSGQGSGGGGKVVFPARS--PRAEPLTGRQTDSERAAHAAFVDEMGENALW 224 >gi|319787627|ref|YP_004147102.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas suwonensis 11-1] gi|317466139|gb|ADV27871.1| DNA polymerase III, epsilon subunit [Pseudoxanthomonas suwonensis 11-1] Length = 247 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 143/241 (59%), Gaps = 14/241 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIG VELL+ + R F +L P+ + A ++ G+ Sbjct: 1 MRQIILDTETTGLEWKKGNRVVEIGCVELLERRPSGRNFHRYLKPDCDFEA-GAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 T EFL DKP+F I EF ++ + AE I HNA FD+GF++ EL R +D Sbjct: 60 TLEFLADKPAFEEIVDEFLEYID--GAELIIHNAAFDLGFLDYELSRCGAHLGRIVDRCS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLLLARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWDR 239 FG + + + T + + + ++P + EEL+ H + ++ L K A+WD+ Sbjct: 178 FG---DVEAASRGPVVTTVSFAPVSGERPRIS-AQPEELEAHARRLERLRKKAGRALWDQ 233 Query: 240 Y 240 Y Sbjct: 234 Y 234 >gi|114332140|ref|YP_748362.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91] gi|114309154|gb|ABI60397.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91] Length = 234 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 94/245 (38%), Positives = 147/245 (60%), Gaps = 27/245 (11%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR + D ETTGLD + RI+EI AVE+ + T R F +L P GR++ AL++HG+ Sbjct: 1 MRYVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNP-GRESDEGALRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 + EFL+DKP+F I SEF +F ++AE + HNA FDVGFIN EL I +P+ +I Sbjct: 60 SREFLQDKPAFQEICSEFLEFI--EDAEILIHNAPFDVGFINRELGLIRLEPMHNYCLQI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS---- 179 +DTL +A+ HP RN+L++LC+RY I +HR+ HGALLD+ LL++VY+ M G Sbjct: 118 VDTLMLAKELHPGKRNNLDALCERYQIDNAHRTLHGALLDAELLAEVYLAMTRGQESLLM 177 Query: 180 --QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---- 233 ++ K+ + R + N++L+ + +++ EL+ HD+ ++ + Sbjct: 178 EPEVPEAGKSGDSRL-----RATENLTLIVQP------VSQTELELHDRLLERINTESKG 226 Query: 234 NAIWD 238 N +W+ Sbjct: 227 NCLWN 231 >gi|88608300|ref|YP_506355.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str. Miyayama] gi|88600469|gb|ABD45937.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str. Miyayama] Length = 228 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 99/241 (41%), Positives = 144/241 (59%), Gaps = 27/241 (11%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 RK++ D ETTGLD KN DR+IEIG VE++D+ T F ++L P R+ S EA ++HGIT Sbjct: 5 RKVILDTETTGLDMKNGDRVIEIGCVEVVDFRITGEIFHIYLNPE-REISKEATRVHGIT 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 E L D P F I +F F + ++E +AHNA FD+ F+N+EL R + L +ID Sbjct: 64 FEQLADSPKFIDIADDFLKFID--SSEIVAHNASFDIRFLNSELIRARQRRLIKLENVID 121 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR+ P S L++LC+R+ I++ R HGALLD+ LL+ VYI++ GSQ++ F Sbjct: 122 TLAMARKIFPGSPASLDALCRRFRISLEQRELHGALLDAQLLARVYIELS-KGSQVSMSF 180 Query: 186 -----KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++E + FKE +K + IT EE EH + I+ L KN +WD Sbjct: 181 LEGSSVSSEKKMFKEREKLI---------------ITPEESLEHSELIRRL-KNPLWDEI 224 Query: 241 I 241 + Sbjct: 225 L 225 >gi|323495336|ref|ZP_08100414.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] gi|323310407|gb|EGA63593.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] Length = 245 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 146/246 (59%), Gaps = 23/246 (9%) Query: 5 NKMRKIVFDIETTGLDS------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 N+ R +V D ETTG++ ++ RIIEIGAVE+++ T R F V++ P+ R+ P+ Sbjct: 8 NQHRIVVLDTETTGMNREGGPHYQDHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPD 66 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP- 117 A+++HGITDEFL DKP + + +EF +F + AE +AHNA FDVGF++ E + DP Sbjct: 67 AVEVHGITDEFLVDKPDYRDVHAEFLEFI--KGAELVAHNAPFDVGFMDHEFGML--DPS 122 Query: 118 ----LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 123 IGKTVDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLL 182 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G + + F + + + K+ LK R T +EL+ H + + K Sbjct: 183 MTGGQTSLQFNAGNSSEDGGEAIKRVASGRKSLK-----VLRATADELEAHQSRLDIVEK 237 Query: 234 NA--IW 237 + +W Sbjct: 238 SGSCLW 243 >gi|209695823|ref|YP_002263753.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238] gi|208009776|emb|CAQ80082.1| DNA polymerase III, epsilon chain [Aliivibrio salmonicida LFI1238] Length = 243 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 143/239 (59%), Gaps = 16/239 (6%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++ + RIIEIGAVE+++ T F V++ P+ R EA+ Sbjct: 10 RIIVLDTETTGMNLSGGPIYEGHRIIEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAID 68 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLD 119 +HGITDEFL KP + I EF F + AE +AHNA FDVGF++ E ++NK D Sbjct: 69 VHGITDEFLYGKPEYKDIHDEFLAFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIGTTD 126 Query: 120 P-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +I DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 127 QYCKITDTLAMAKKISPGKRNNLDVLCGRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 186 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + ++F NE ++++ ++L ++ + R T +EL+ H+K + +G +W Sbjct: 187 TSLSFSAGGNES---DSSEESINRLNLGRKGLKVL-RATADELEAHEKRLDIVGDACLW 241 >gi|83594940|ref|YP_428692.1| DNA polymerase III, subunit epsilon [Rhodospirillum rubrum ATCC 11170] gi|83577854|gb|ABC24405.1| DNA polymerase III, epsilon subunit [Rhodospirillum rubrum ATCC 11170] Length = 230 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 141/234 (60%), Gaps = 12/234 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG +EL+++ + +++ P R PEA ++HG+ Sbjct: 1 MREIVLDTETTGLDPATGDRLVEIGCIELINHMPSGNDLHLYVNPE-RDMPPEAFRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ FL DKP F+ + EF F E I HNA FD+ F+NAEL R+ + PL SR +D Sbjct: 60 SEAFLADKPLFAEVVDEFLAFIGEDR--LIIHNAAFDMKFLNAELARLKRPPLPMSRALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ + P ++ L++LC+R+G+ S R+KHGAL+D LL++VY++ ++GG + Sbjct: 118 TLRMAQARFPGAQASLDALCRRFGVDTSSRTKHGALIDCVLLAEVYLE-LIGGREPGLAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 ++ R + V + +P + EEL H++ ++ + K+ IW R Sbjct: 177 SADKRR----DGAAVQVARPFRAPRP--HAASPEELAAHEEFLKKV-KDPIWRR 223 >gi|262170796|ref|ZP_06038474.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] gi|261891872|gb|EEY37858.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] Length = 247 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 85/190 (44%), Positives = 124/190 (65%), Gaps = 12/190 (6%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 +HGITDEFL+DKP + + EF DF ++AE +AHNA FDVGF++ E ++ + Sbjct: 70 VHGITDEFLRDKPEYKDVHDEFLDFI--KDAELVAHNAPFDVGFMDYEFAKLGGSVVKTT 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTN 188 + + F T Sbjct: 188 TSLQFSAATQ 197 >gi|91775831|ref|YP_545587.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] gi|91709818|gb|ABE49746.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] Length = 231 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 99/237 (41%), Positives = 138/237 (58%), Gaps = 16/237 (6%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL ++ RIIEI VEL++ TN F V+L P+ R+ A ++HGI Sbjct: 3 MRQIFLDTETTGLYHAQGHRIIEIAGVELVNRRLTNNHFHVYLNPD-REIDEAAQEVHGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T EFL+DKP F+ I EF F + A+ I HNA FD+GF+NAEL R+ + ++ S I Sbjct: 62 TLEFLQDKPRFADIVDEFLQFVS--GADLIIHNAPFDIGFLNAELNRVGRQNIEHSVLEI 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +A+ P RN+L++LC+ YGI S R+ HGALLD+ LL+DVY+ M G + Sbjct: 120 IDTLKMAKEMRPGQRNNLDALCRHYGIDNSSRTLHGALLDAELLADVYMAMTRGQESLMI 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHDKTIQTLGKNA--IW 237 D + + I L R KPL E EL H++ +Q + K+ +W Sbjct: 180 ------DMLDQGPIEGSGEIR-LTRSKPLLVLTASEAELAAHEEYLQAMSKSGACVW 229 >gi|153876055|ref|ZP_02003569.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS] gi|152067479|gb|EDN66429.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS] Length = 239 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 98/239 (41%), Positives = 144/239 (60%), Gaps = 15/239 (6%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL K+ RIIEIG +E+L+ TN+ + FL P+ RK+ EAL +HGI Sbjct: 1 MRQIALDTETTGLSVKDGHRIIEIGCIEILNRRVTNKYYHQFLQPD-RKSDTEALAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDP-SR 122 T EFLKDKP F I ++F +F + AE + HNA FD+ FIN EL+ +++D PL+ + Sbjct: 60 THEFLKDKPRFREIVNDFMNFI--KGAELLIHNAAFDMSFINRELELLHQDWQPLEHYCK 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I D+L +A+ +HP +N+L++LCKRYG+ S+R HGALLD+ +L++VY+ M + Sbjct: 118 ITDSLVLAKERHPGQKNNLDALCKRYGVDNSNRQLHGALLDAEILAEVYLTMTAEQVSL- 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237 + N F K T+ IS + L T T+ EL H + + + G +W Sbjct: 177 LASEGNNIEFLK--NNTIKRISSKRASLTLITP-TEGELQAHKQRLTAINKACGGKCLW 232 >gi|258627375|ref|ZP_05722159.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603] gi|258580413|gb|EEW05378.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603] Length = 247 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 85/189 (44%), Positives = 124/189 (65%), Gaps = 12/189 (6%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 +HGITDEFL+DKP + + EF DF ++AE +AHNA FDVGF++ E ++ + Sbjct: 70 VHGITDEFLRDKPEYKDVHDEFLDFI--KDAELVAHNAPFDVGFMDYEFAKLGGSVVKTT 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKT 187 + + F T Sbjct: 188 TSLQFSAAT 196 >gi|152986464|ref|YP_001348839.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7] gi|150961622|gb|ABR83647.1| DNA polymerase III, epsilon subunit [Pseudomonas aeruginosa PA7] Length = 246 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 137/239 (57%), Gaps = 18/239 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ + RIIEIG VEL T R F V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121 T+E+LKDKP F + ++F++F + A+ I HNA FD+GFIN E Q+ D + Sbjct: 60 TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR +HP RN+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 TVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-----FTRITKEELDEHDKTIQTLGKNA 235 + E + P +S ++R P R + EEL H + + K+A Sbjct: 178 SLAGSGAEG-----DGSGRPMVSPIRRLDPARVATPVLRASAEELAAHAARLAVIEKSA 231 >gi|71733799|ref|YP_273952.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. phaseolicola 1448A] gi|289627521|ref|ZP_06460475.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649928|ref|ZP_06481271.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aesculi str. 2250] gi|298486280|ref|ZP_07004343.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554352|gb|AAZ33563.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159287|gb|EFI00345.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868357|gb|EGH03066.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330985658|gb|EGH83761.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012696|gb|EGH92752.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 259 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 100/250 (40%), Positives = 144/250 (57%), Gaps = 19/250 (7%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ + RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + ++D D ++ Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G Q + Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTL----GK 233 N + + S ++R KP R ++ EL EH+ + T+ G Sbjct: 184 LSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGA 243 Query: 234 NAIWDRYISS 243 A+W + + + Sbjct: 244 PALWVQMLEA 253 >gi|285017397|ref|YP_003375108.1| DNA polymerase III, epsilon subunit protein [Xanthomonas albilineans GPE PC73] gi|283472615|emb|CBA15120.1| probable dna polymerase III, epsilon subunit protein [Xanthomonas albilineans] Length = 244 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 98/241 (40%), Positives = 141/241 (58%), Gaps = 17/241 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + R F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWKKGNRVVEIGAVELLERRPSGRHFHRYLRPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T EFL DKP F + EF +F + AE + HNA FD+GF++ EL R+ + LD + Sbjct: 60 TLEFLADKPEFHEVVDEFLEFID--GAELVIHNASFDLGFLDYELSRLGESYGCILDRAS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR + P RN L++LCKR G+ +HR HGALLD+ +L +VYI + G +I Sbjct: 118 VVDTLLLARERFPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILCEVYIALTSGQEEI- 176 Query: 183 FGFKTNEDRFFKEEKKTVP--NISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIW 237 GF E+ K + V +LL R + L T EL+ H + TL K A+W Sbjct: 177 -GFALVEETTGKTDAHGVAFDMATLLPRPQVL---PTASELEAHQARLDTLRKKAGRALW 232 Query: 238 D 238 D Sbjct: 233 D 233 >gi|258621021|ref|ZP_05716055.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573] gi|262166312|ref|ZP_06034049.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223] gi|258586409|gb|EEW11124.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573] gi|262026028|gb|EEY44696.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223] Length = 247 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 85/190 (44%), Positives = 123/190 (64%), Gaps = 12/190 (6%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 +HGITDEFL+DKP + + EF DF + AE +AHNA FDVGF++ E ++ + Sbjct: 70 VHGITDEFLRDKPEYKDVHDEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGSVVKTT 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTN 188 + + F T Sbjct: 188 TSLQFSAATQ 197 >gi|261211353|ref|ZP_05925641.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] gi|260839308|gb|EEX65934.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] Length = 247 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 84/185 (45%), Positives = 122/185 (65%), Gaps = 12/185 (6%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PL 118 +HGITDEFL+DKP + + +EF DF + AE +AHNA FDVGF++ E ++ Sbjct: 70 VHGITDEFLRDKPEYKEVHAEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGSSIGKTT 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINF 183 + + F Sbjct: 188 TSLQF 192 >gi|117619304|ref|YP_856106.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560711|gb|ABK37659.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 244 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 88/191 (46%), Positives = 125/191 (65%), Gaps = 11/191 (5%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG+++ RIIEIG VE+++ T F V++ P+ R PEA++ Sbjct: 8 RQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHFHVYIKPD-RLVDPEAIQ 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLD 119 +HGITDEFL+DKPSFS I EF +F + AE IAHNA FDV F++ E ++ N D Sbjct: 67 VHGITDEFLRDKPSFSQIADEFIEFI--RGAELIAHNAPFDVSFMDYEFGKLGLNFKTAD 124 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I DTL++AR P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G + Sbjct: 125 ICGITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 184 Query: 180 QINFGFKTNED 190 ++N +++E+ Sbjct: 185 KLNLATESSEN 195 >gi|119503277|ref|ZP_01625361.1| response regulator receiver domain protein (CheY-like) [marine gamma proteobacterium HTCC2080] gi|119460923|gb|EAW42014.1| response regulator receiver domain protein (CheY-like) [marine gamma proteobacterium HTCC2080] Length = 239 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 12/238 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++V D ETTGL+ S+ RIIEIG VEL++ T R F ++ P R AL +HGIT Sbjct: 3 RQVVLDTETTGLEVSQGHRIIEIGCVELINRRLTGRHFHQYIQPE-RDIDAGALAVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS---RI 123 EFL DKP+F I ++F F + AE I HNA FDVGFI+AEL R N+D S I Sbjct: 62 PEFLADKPTFDRIANDFVTFID--GAELIIHNAPFDVGFIDAELARFNRDHPSTSALCSI 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL++AR KHP RN L++LC+RY + + R+ HGALLD+ +L+DV++ M G + + Sbjct: 120 VDTLTLARSKHPGQRNSLDALCQRYHVDNASRTLHGALLDAEILADVFLIMTGGQTSLGL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237 + +E+ + + +S ++ P+ T EL H+ + + G +W Sbjct: 180 HDEPSEEGGSGLGARGIRRLSSERKPLPVIN-ATAAELSRHENRLDQIATHSGGAVLW 236 >gi|238897890|ref|YP_002923569.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465647|gb|ACQ67421.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 241 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 99/243 (40%), Positives = 143/243 (58%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTGL+ + IIEIGAVE+++ T +TF ++ PN R+ PEA ++ Sbjct: 3 RQIVLDTETTGLNKTGPHYEGHNIIEIGAVEVINRRLTGKTFHTYVRPN-RQVDPEAYQI 61 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP FS IFS+F++F + +E I HNA FD+GF++ E + ++ Sbjct: 62 HGISDEFLSDKPRFSEIFSQFFEFI--RGSELIIHNAAFDIGFMDYEFSALQQNIPKTNT 119 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + DTL++ARR P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 120 FCTVTDTLALARRLFPGKRNSLDALCDRYQIDNSKRTLHGALLDAQILAEVYLAMTGGQT 179 Query: 180 QINFGFKTNED--RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---N 234 +F +T+E R K V S LK + +ELDEH ++ L K + Sbjct: 180 LFSFSDETDETDIRNMTVRPKRVKTSSQLK-----IIYASCDELDEHQASLDLLEKKEGS 234 Query: 235 AIW 237 IW Sbjct: 235 CIW 237 >gi|27365234|ref|NP_760762.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6] gi|37680713|ref|NP_935322.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016] gi|320155618|ref|YP_004187997.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O] gi|27361381|gb|AAO10289.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus CMCP6] gi|37199462|dbj|BAC95293.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016] gi|319930930|gb|ADV85794.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O] Length = 243 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 94/241 (39%), Positives = 141/241 (58%), Gaps = 21/241 (8%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ P+A+ Sbjct: 11 RIVVLDTETTGMNREGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAID 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITD+FL DKP + + EF +F + AE +AHNA FDVGF++ E +++ Sbjct: 70 VHGITDQFLVDKPEYRQVHQEFLEFI--KGAELVAHNAPFDVGFMDYEFGKLDAAIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMT--G 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--I 236 Q + F N E+ + V LK R T +EL+ H + + K+ + Sbjct: 186 GQTSLEFNANSQEGGGEDIRRVAGRKSLK-----VLRATADELEAHQSRLDIVEKSGTCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|89094533|ref|ZP_01167472.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Oceanospirillum sp. MED92] gi|89081269|gb|EAR60502.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Oceanospirillum sp. MED92] Length = 236 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 96/239 (40%), Positives = 144/239 (60%), Gaps = 17/239 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ IIEIG VE+ + T +T+ ++ P+ R EA+++HGI Sbjct: 1 MRQIVLDTETTGLEPSEGHNIIEIGCVEMFNRRLTGKTYHQYIKPD-RDVDAEAIQVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122 T+EFL+DKP F + EF +F + AE I HNA FD+GF++ EL R N P + S Sbjct: 60 TNEFLEDKPKFHEVMEEFVEFV--RGAELIIHNAAFDIGFLDTELDR-NGYPERMENFSL 116 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + D+L +AR+KHP +N+L++LC RYGI SHR HGALLDS +L+DVY+ + G + ++ Sbjct: 117 VTDSLKLARKKHPGQKNNLDALCNRYGINNSHRELHGALLDSEILADVYLALTGGQTNLS 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237 + ++ K + D PL +I++ + EHDK ++ L G +W Sbjct: 177 LAGEGDDGEGAGAVIKRLSGAD----DLPL-VQISENDQQEHDKFLKMLDKKSGGECLW 230 >gi|260576103|ref|ZP_05844096.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2] gi|259021583|gb|EEW24886.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2] Length = 231 Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 93/232 (40%), Positives = 138/232 (59%), Gaps = 6/232 (2%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + S+ RI+EIGA+EL ++ T RTF +L P R EA +HG+ Sbjct: 1 MREIVLDTETTGFEPSEGHRIVEIGALELFNHLPTGRTFHKYLNPE-RSMPKEAFDVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+ KP F ++ EF +F +A + HNA FD+ F+NAEL N L R +D Sbjct: 60 GDDFLRGKPLFRAVAREFLEFIG--DATLVIHNASFDMKFLNAELAAANLPLLPFERALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +AR+K P S L++LC+R+G+ S R KHGALLDS +L++VY++ ++GG Q + Sbjct: 118 TVLMARKKFPGSPASLDALCRRFGVDNSGREKHGALLDSEILAEVYLE-LIGGRQPDLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 ++ + +T + R PL +T+EE H + LG +AIW Sbjct: 177 AQHQSTKSGDTLETF-DWRPRPRSVPLPPGLTQEEAAAHTAFVARLGDDAIW 227 >gi|260772249|ref|ZP_05881165.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] gi|260611388|gb|EEX36591.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] Length = 246 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 140/242 (57%), Gaps = 24/242 (9%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE++D T R F V+L P+ R+ P+A++ Sbjct: 11 RIVVLDTETTGMNFEGGPHYEGHRIIEIGAVEIIDRKLTGRHFHVYLKPD-REIQPQAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITD FL DKP + + EF DF + AE +AHNA FDVGF++ E ++N Sbjct: 70 VHGITDAFLVDKPQYKEVHQEFLDFI--KGAELVAHNASFDVGFMDYEFAKVNPAIGKTE 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +I DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 QYCKITDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDR----FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + + F + F + + N+ +L R + +E++ H + + + K+ Sbjct: 188 TSLQFSASSQSGEPAGSFVQRVQGERKNLKVL--------RASADEIEAHQQRLDVVEKS 239 Query: 235 AI 236 I Sbjct: 240 GI 241 >gi|146310412|ref|YP_001175486.1| DNA polymerase III subunit epsilon [Enterobacter sp. 638] gi|145317288|gb|ABP59435.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638] Length = 245 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 146/242 (60%), Gaps = 20/242 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGRNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF ++ N AE + HNA FD+GF++ E ++N++ Sbjct: 69 HGIADEFLLDKPTFADVADEFIEYIN--GAELVIHNASFDIGFMDYEFSKLNRNIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ +P RN L++LC RY I S R+ HGALLD+ +L+DVY+ +M GG Sbjct: 127 FCKVTDSLALARKMYPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYL-LMTGG- 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDK---TIQTLGKNA 235 Q + F T D +++ ++++D L ++EEL EH+ +Q G + Sbjct: 185 QTSMAFSTESD---SQQQANGGIQRVVRQDSRLRVILASEEELAEHESRLDIVQKKGGSC 241 Query: 236 IW 237 +W Sbjct: 242 LW 243 >gi|56550935|ref|YP_161774.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp. mobilis ZM4] gi|56542509|gb|AAV88663.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 234 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 141/240 (58%), Gaps = 14/240 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGL N DR++EIG VEL++ +T +F + P R A +HG+ Sbjct: 1 MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPE-RPMDAVAESIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D FL DKP F+ E F + + +AHNA FD GF+N EL + + +R++D Sbjct: 60 SDAFLADKPLFADKAQELLSFI--KLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR KHP +++ L++LC RYGI SHR KHGALLD+ LL+ +Y++ + GG QI G Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVE-LTGGRQI--GM 174 Query: 186 KTNEDRFFKEEKKTVPN-ISLLKRDK-----PLFTRITKEELDEHDKTIQTLGKNAIWDR 239 +++ + + + PN +S L R+K P + +EL H I + N +W R Sbjct: 175 ALDDNNGPSDGRLSAPNTVSGLPRNKKVKRQPRPHEASPQELLRHGAFIDKI-SNPVWRR 233 >gi|152980051|ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthinobacterium sp. Marseille] gi|151280128|gb|ABR88538.1| DNA polymerase III epsilon subunit [Janthinobacterium sp. Marseille] Length = 235 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 84/180 (46%), Positives = 119/180 (66%), Gaps = 6/180 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ ++ DRIIEIG VEL++ T F ++ P R + AL +HG+ Sbjct: 1 MRQIVLDTETTGLNPRSGDRIIEIGCVELVNRRLTGNNFHHYINPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ I +EF D+ + A+ I HNA FD+GF++AEL+R+N + Sbjct: 60 TTEFLSDKPKFAEIAAEFRDYIS--GADVIIHNAPFDIGFLDAELKRVNTPSFKEHVGEV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A+ HP RN L++LC RYGI+ +HR+ HGALLD+ LL++VY+ M G + ++ Sbjct: 118 IDTLVQAKEMHPGKRNSLDALCDRYGISNAHRALHGALLDAELLAEVYLAMTRGQNSLSM 177 >gi|330882898|gb|EGH17047.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. glycinea str. race 4] Length = 259 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 99/250 (39%), Positives = 144/250 (57%), Gaps = 19/250 (7%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ + RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + ++D D ++ Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G Q + Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTL----GK 233 N + + S ++R KP R ++ EL EH+ + T+ G Sbjct: 184 LSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGA 243 Query: 234 NAIWDRYISS 243 A+W + + + Sbjct: 244 PALWVQMLEA 253 >gi|330889978|gb|EGH22639.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. mori str. 301020] Length = 259 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 100/250 (40%), Positives = 143/250 (57%), Gaps = 19/250 (7%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ + RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPS---R 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + ++D D + Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITLHCS 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G Q + Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTL----GK 233 N + + S ++R KP R ++ EL EH+ + T+ G Sbjct: 184 LSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGA 243 Query: 234 NAIWDRYISS 243 A+W + + + Sbjct: 244 PALWVQMLEA 253 >gi|330959421|gb|EGH59681.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. maculicola str. ES4326] Length = 259 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 101/256 (39%), Positives = 149/256 (58%), Gaps = 16/256 (6%) Query: 1 MIRKNKM-RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M+ KN R +V D ETTG+ + RIIEIG VEL+ T R F V+L P+ R++ Sbjct: 1 MVDKNGTHRAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDP 117 A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + +D Sbjct: 60 AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDK 117 Query: 118 LDPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D +R I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L++VY+ M Sbjct: 118 ADITRHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILAEVYLAM 177 Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDK-PL-FTRITKEELDEHDKTIQTL 231 G + ++ G ++ + + I L D+ P R ++ EL EH+ + T+ Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGGSSRGSEIRRLPADRLPCRVIRASESELAEHEVRMNTI 237 Query: 232 ----GKNAIWDRYISS 243 G A+W + + + Sbjct: 238 AKASGAPALWVQMLEA 253 >gi|149185255|ref|ZP_01863572.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21] gi|148831366|gb|EDL49800.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21] Length = 229 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 83/178 (46%), Positives = 114/178 (64%), Gaps = 5/178 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD + DR++EIG VE++ T TF + P R A +HG+ Sbjct: 1 MREIVFDTETTGLDPRTGDRMVEIGCVEMVSLVPTGNTFHAYYNPE-RDMPAGAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL DKP F E DF +A IAHNA FD GF+NAEL ++ + SR+ID Sbjct: 60 SAAFLSDKPLFRDTAHELLDFIG--DAPLIAHNAGFDFGFLNAELALCEREAVCMSRMID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 T+++A+++HP ++ L++LC RYGI SHR KHGALLD+ LL+ VY+++ GG QI Sbjct: 118 TVALAKKRHPGAKLSLDALCTRYGIDRSHRVKHGALLDAELLAQVYVELK-GGRQIGL 174 >gi|320325171|gb|EFW81239.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. glycinea str. B076] Length = 259 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 99/250 (39%), Positives = 144/250 (57%), Gaps = 19/250 (7%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ + RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + ++D D ++ Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G Q + Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTL----GK 233 N + + S ++R KP R ++ EL EH+ + T+ G Sbjct: 184 LSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGA 243 Query: 234 NAIWDRYISS 243 A+W + + + Sbjct: 244 PALWVQMLEA 253 >gi|49082166|gb|AAT50483.1| PA1816 [synthetic construct] Length = 247 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 136/239 (56%), Gaps = 18/239 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ + RIIEIG VEL T R F V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121 T+E+LKDKP F + ++F++F + A+ I HNA FD+GFIN E Q+ D + Sbjct: 60 TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR +HP RN+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-----FTRITKEELDEHDKTIQTLGKNA 235 + E + P +S ++R P R EEL H + + K+A Sbjct: 178 SLAGSGAEG-----DGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSA 231 >gi|15597013|ref|NP_250507.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1] gi|107101248|ref|ZP_01365166.1| hypothetical protein PaerPA_01002281 [Pseudomonas aeruginosa PACS2] gi|218892230|ref|YP_002441097.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58] gi|254234910|ref|ZP_04928233.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719] gi|296389793|ref|ZP_06879268.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1] gi|313110514|ref|ZP_07796399.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016] gi|9947801|gb|AAG05205.1|AE004608_4 DNA polymerase III, epsilon chain [Pseudomonas aeruginosa PAO1] gi|7229492|gb|AAF42851.1| mismatch repair protein MutD [Pseudomonas aeruginosa PAO1] gi|126166841|gb|EAZ52352.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719] gi|218772456|emb|CAW28238.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa LESB58] gi|310882901|gb|EFQ41495.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016] Length = 246 Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 136/239 (56%), Gaps = 18/239 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ + RIIEIG VEL T R F V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121 T+E+LKDKP F + ++F++F + A+ I HNA FD+GFIN E Q+ D + Sbjct: 60 TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR +HP RN+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-----FTRITKEELDEHDKTIQTLGKNA 235 + E + P +S ++R P R EEL H + + K+A Sbjct: 178 SLAGSGAEG-----DGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSA 231 >gi|126734401|ref|ZP_01750148.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2] gi|126717267|gb|EBA14131.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2] Length = 241 Score = 164 bits (415), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 96/247 (38%), Positives = 140/247 (56%), Gaps = 24/247 (9%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL+ + T RT+ ++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFEPHEGDRIVEIGAVELMGHVPTGRTYHQYINPQ-RSMPAEAFGVHGI 59 Query: 66 T-------------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 E L+DKP F + +F DF +A+ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQDPKPGQETLRDKPLFKDVAQDFVDFVG--DAKLVIHNAAFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +N+ L + +DTL+IARRK P S L++LC+R+ I S R+ HGALLDS +L++VY+ Sbjct: 118 LNRPLLPMDQALDTLAIARRKFPGSPASLDALCRRFAIDNSSRTLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINFGFK--TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 + ++GG Q +F T + + P+ R +PL ++T EE H ++ Sbjct: 178 E-LIGGRQPDFALAADTRSQSAGGQSDEWRPS----ARPEPLAPKLTIEEAAAHAAFVEQ 232 Query: 231 LGKNAIW 237 LG AIW Sbjct: 233 LGDGAIW 239 >gi|254240209|ref|ZP_04933531.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192] gi|126193587|gb|EAZ57650.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192] Length = 246 Score = 164 bits (415), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 136/239 (56%), Gaps = 18/239 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ + RIIEIG VEL T R F V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRHLTGRHFHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121 T+E+LKDKP F + ++F++F + A+ I HNA FD+GFIN E Q+ D + Sbjct: 60 TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR +HP RN+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-----FTRITKEELDEHDKTIQTLGKNA 235 + E + P +S ++R P R EEL H + + K+A Sbjct: 178 SLAGSGAEG-----DGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSA 231 >gi|56698700|ref|YP_169077.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3] gi|56680437|gb|AAV97103.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3] Length = 241 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 97/249 (38%), Positives = 141/249 (56%), Gaps = 25/249 (10%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL ++ T T+ ++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPETGDRIVEIGAVELWNHIATGNTYHQYINPE-RMMPAEAFGVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F+ + F DF ++ + HNA FD+ F+NAEL+ Sbjct: 60 GPDILEPPQQPEPGQVTLRDKPVFAKVGQAFRDFV--ADSHLVIHNASFDMKFLNAELRW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + R IDTL +ARRK P S L++LC+R+GI S+R HGALLD+ +L++VY+ Sbjct: 118 MGLPEIPFDRAIDTLGMARRKFPGSPATLDALCRRFGIDNSNRVLHGALLDAEILAEVYL 177 Query: 173 KMMVGGSQINFGFK--TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 + ++GG Q +FG T D +E + R PL RIT+ E H + ++ Sbjct: 178 E-LIGGKQPDFGLSTVTTGDGPGQETAWRA-----MPRPTPLPARITEAERTAHAEFVEK 231 Query: 231 LGKNAIWDR 239 LG+NA+W R Sbjct: 232 LGENAVWKR 240 >gi|257095469|ref|YP_003169110.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047993|gb|ACV37181.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 238 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 131/229 (57%), Gaps = 11/229 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL+ K RIIEI VE+ + TNR F +L P+ R AL +HGI Sbjct: 1 MRQIFLDTETTGLEHKFGHRIIEIACVEMRNRRLTNRHFHRYLNPD-RDIDAGALSVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 + EFL DKP F+ + EF DF + AE + HNA FDVGF+NAEL ++ P+D + Sbjct: 60 SREFLLDKPRFADVAVEFLDFV--RGAELVIHNAAFDVGFLNAELALLDMAPVDTVCHGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL +A+ HP +N+LN+LC+RYG+ SHR+ HGALLD+ +L++VY+ M G + Sbjct: 118 CDTLRMAKDLHPGKKNNLNALCERYGVDNSHRTLHGALLDAEILAEVYLAMTRGQESLIM 177 Query: 184 GFK-TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 N R + P +R R + EEL EH + + + Sbjct: 178 DLGDDNGGRLDTAGRTPSPG----RRQTLQVKRASPEELAEHQQVLTAI 222 >gi|289207686|ref|YP_003459752.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. K90mix] gi|288943317|gb|ADC71016.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. K90mix] Length = 238 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/185 (46%), Positives = 121/185 (65%), Gaps = 11/185 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ R+IEIG +EL + T R +L P+ R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEPSEGHRVIEIGCLELDNRRPTGRKLHEYLQPD-REIDAGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-----DPLDP 120 T+EFL DKP F+ + EF +F + AE I HNA FDVGFIN EL+ + + + ++ Sbjct: 60 TNEFLADKPRFADVVGEFIEFV--RGAELIIHNAPFDVGFINHELRLLGEAAPVTELVEV 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++D+L +ARR HP +RN L++LCKRY I S R+ HGALLD+ LL+DVY+ M G Q Sbjct: 118 CTVLDSLVMARRMHPGTRNSLDALCKRYEIDASGRTLHGALLDAELLADVYLAMT--GGQ 175 Query: 181 INFGF 185 + G Sbjct: 176 VALGL 180 >gi|116049766|ref|YP_791427.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa UCBPP-PA14] gi|115584987|gb|ABJ11002.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa UCBPP-PA14] Length = 246 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 136/239 (56%), Gaps = 18/239 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ + RIIEIG VEL T R F V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121 T+E+LKDKP F + ++F++F + A+ I HNA FD+GFIN E Q+ D + Sbjct: 60 TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVSEYC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR +HP RN+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-----FTRITKEELDEHDKTIQTLGKNA 235 + E + P +S ++R P R EEL H + + K+A Sbjct: 178 SLAGSGAEG-----DGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSA 231 >gi|88857806|ref|ZP_01132448.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudoalteromonas tunicata D2] gi|88819423|gb|EAR29236.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudoalteromonas tunicata D2] Length = 252 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 85/184 (46%), Positives = 117/184 (63%), Gaps = 7/184 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+D K RIIEIG VEL++ T F V++ P R EA+ +HGIT Sbjct: 19 RQIVLDTETTGIDPKLGHRIIEIGCVELINRRFTGNNFHVYINPE-RDIEDEAIDVHGIT 77 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRI 123 ++FL+DKP F I EF+D+ Q AE + HNA FDVGF+++E QR+ ++ Sbjct: 78 NQFLRDKPKFHHIAQEFFDYI--QGAELVIHNAAFDVGFMDSEFQRLRTGYPKTAQFCQV 135 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR HP +N+L++LC+RY I R+ HGALLDS +LSDVY+ M G +N Sbjct: 136 LDTLKMARELHPGQKNNLDALCRRYNIDNGKRTMHGALLDSEILSDVYLAMTGGQVSLNL 195 Query: 184 GFKT 187 +T Sbjct: 196 NTQT 199 >gi|153829952|ref|ZP_01982619.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] gi|148874587|gb|EDL72722.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] Length = 247 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/190 (45%), Positives = 122/190 (64%), Gaps = 12/190 (6%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITDEFLKDKP + + EF DF + AE +AHNA FDVGF++ E +++ Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLSGAIGKTS 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTN 188 + + F T Sbjct: 188 TSLQFSSATQ 197 >gi|239993463|ref|ZP_04713987.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC 27126] Length = 239 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 85/178 (47%), Positives = 121/178 (67%), Gaps = 9/178 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D K RIIEIG VE+++ T F V++ P GR EA+++HGI Sbjct: 1 MRQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINP-GRHIEQEAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE--LQRINKDPL--DPS 121 T+EFL DKP+FS + EF F + A+ + HNA FDVGF++ E ++ K + Sbjct: 60 TNEFLADKPTFSQVAQEFVSFI--KGAQLVIHNAPFDVGFMDHEFGMEASTKGVITNQIC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++DTL++AR+ HP +N+L++LCKRYGI SHR+ HGALLD+ +L+DVY+ +M GG Sbjct: 118 DVLDTLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYL-LMTGGQ 174 >gi|323498002|ref|ZP_08103011.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] gi|323317047|gb|EGA70049.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] Length = 247 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/242 (38%), Positives = 141/242 (58%), Gaps = 19/242 (7%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ PEA+ Sbjct: 11 RIIVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RQIQPEAVL 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PL 118 +HGITDEFL DKP + + EF +F + AE +AHNA FD GF++ E + +N Sbjct: 70 VHGITDEFLVDKPEYQDVHQEFLEFI--KGAELVAHNAPFDTGFMDYEFEMLNAQIGKTE 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA-- 235 + + F ++ D E K V + R R + +EL+ H + + K+ Sbjct: 188 TSLQFNPGASDSDAVGGESIKRVAS----GRKALKVIRASADELEAHQSRLDIVEKSGSC 243 Query: 236 IW 237 +W Sbjct: 244 LW 245 >gi|153825368|ref|ZP_01978035.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2] gi|183179467|ref|ZP_02957678.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3] gi|229524236|ref|ZP_04413641.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] gi|229528763|ref|ZP_04418153.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] gi|254225776|ref|ZP_04919381.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51] gi|254286458|ref|ZP_04961415.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226] gi|262192140|ref|ZP_06050301.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] gi|297580875|ref|ZP_06942800.1| DNA polymerase III [Vibrio cholerae RC385] gi|125621682|gb|EAZ50011.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51] gi|149741052|gb|EDM55121.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2] gi|150423407|gb|EDN15351.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226] gi|183012878|gb|EDT88178.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3] gi|229332537|gb|EEN98023.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] gi|229337817|gb|EEO02834.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] gi|262031989|gb|EEY50566.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] gi|297534701|gb|EFH73537.1| DNA polymerase III [Vibrio cholerae RC385] gi|327484751|gb|AEA79158.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4] Length = 247 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/190 (45%), Positives = 121/190 (63%), Gaps = 12/190 (6%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITDEFLKDKP + + EF DF + AE +AHNA FDVGF++ E ++ Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKTS 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTN 188 + + F T Sbjct: 188 TSLQFSSATQ 197 >gi|302187967|ref|ZP_07264640.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. syringae 642] gi|330952814|gb|EGH53074.1| DNA polymerase III subunit epsilon [Pseudomonas syringae Cit 7] gi|330972572|gb|EGH72638.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aceris str. M302273PT] Length = 259 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/236 (41%), Positives = 138/236 (58%), Gaps = 15/236 (6%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ + RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + ++D D ++ Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G Q + Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTLGK 233 N + + S ++R KP R ++ EL EH+ + T+ K Sbjct: 184 LSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAK 239 >gi|289679441|ref|ZP_06500331.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. syringae FF5] gi|330975085|gb|EGH75151.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 259 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 15/236 (6%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ + RI+EIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + ++D D ++ Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G Q + Sbjct: 126 VLDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTLGK 233 N + + S ++R KP R ++ EL EH+ + T+ K Sbjct: 184 LSLAGNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHEVRMSTIAK 239 >gi|84389766|ref|ZP_00991318.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] gi|84376867|gb|EAP93741.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] Length = 255 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/244 (38%), Positives = 142/244 (58%), Gaps = 26/244 (10%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++++ RI+EIGAVE+++ T R F V++ P+ R EA+ Sbjct: 22 RIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRRLTGRHFHVYIKPD-RAIQEEAIG 80 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITDEFL DKP + I EF DF + AE +AHNA FD GF++ E +++N Sbjct: 81 VHGITDEFLIDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLNSAIGKTD 138 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ +M GG Sbjct: 139 DYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYL-LMTGG 197 Query: 179 S---QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 Q N G K E + + ++ +L R T +E++ H + + K+ Sbjct: 198 QTSLQFNAGQKEGEGESIRRAESGRKSLKVL--------RATADEVEAHQSRLDLVEKSG 249 Query: 236 --IW 237 +W Sbjct: 250 SCLW 253 >gi|307545281|ref|YP_003897760.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581] gi|307217305|emb|CBV42575.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581] Length = 255 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 83/193 (43%), Positives = 120/193 (62%), Gaps = 12/193 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTG+D + R+IEIGAVE+++ T T+ ++ P R EA+++HGI Sbjct: 1 MRQIILDTETTGIDPREGHRLIEIGAVEMVNRRLTGNTYHQYINPE-RDIEAEAVEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----- 120 T+E + D+P F+ + FW F + AE + HNA FDVGFI+ E R+N+ P Sbjct: 60 TNEKVADEPVFAEVADAFWAFI--KGAELVIHNAPFDVGFIDHEFARLNEARGGPVLGPV 117 Query: 121 ---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 RI+DTL +AR KHP RN+L++LCKRY I HR HGALLD+ +L+DVY+ M G Sbjct: 118 AEHCRILDTLQLARDKHPGQRNNLDALCKRYEIQNGHRVLHGALLDAEILADVYLAMTGG 177 Query: 178 GSQINFGFKTNED 190 + ++ +D Sbjct: 178 QTALSLDASAGDD 190 >gi|66045009|ref|YP_234850.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. syringae B728a] gi|63255716|gb|AAY36812.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Pseudomonas syringae pv. syringae B728a] Length = 259 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 98/236 (41%), Positives = 138/236 (58%), Gaps = 15/236 (6%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ + RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + ++D D ++ Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G Q + Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTLGK 233 N + + S ++R KP R ++ EL EH+ + T+ K Sbjct: 184 LSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAK 239 >gi|46201693|ref|ZP_00054536.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 230 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/236 (40%), Positives = 140/236 (59%), Gaps = 10/236 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D R++EIG VEL ++ T F + P R EA K+HG+ Sbjct: 1 MREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGEVFHRYCNPE-RDMPEEAFKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ I ++F +F +A + HNA+FD+ FINAEL R+ L SR ID Sbjct: 60 SVEFLSDKPLFAEIVADFLEFIG--DAPLVIHNAEFDMRFINAELARLGFPALPMSRSID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +AR+K P ++ +L++LC+R+ I +HR+KHGALLDS LL++VY++ ++GG Q G Sbjct: 118 TVMMARKKFPGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQ-LIGGRQP--GL 174 Query: 186 KTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + +KRD +P T+EE H + L KNA+W R Sbjct: 175 ELGGGKGNGAGSAASASTQEVKRDFREPRPHGPTEEETAAHTAFVAKL-KNAVWLR 229 >gi|28199104|ref|NP_779418.1| DNA polymerase III subunit epsilon [Xylella fastidiosa Temecula1] gi|71901532|ref|ZP_00683617.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|182681831|ref|YP_001829991.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M23] gi|28057202|gb|AAO29067.1| DNA polymerase III epsilon chain [Xylella fastidiosa Temecula1] gi|71728719|gb|EAO30865.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|182631941|gb|ACB92717.1| DNA polymerase III, epsilon subunit [Xylella fastidiosa M23] gi|307578082|gb|ADN62051.1| DNA polymerase III subunit epsilon [Xylella fastidiosa subsp. fastidiosa GB514] Length = 239 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/246 (40%), Positives = 140/246 (56%), Gaps = 21/246 (8%) Query: 4 KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +NK R+IV D ETTGL+ SK +RI+EIGAVELLD + F +L P+ S A ++ Sbjct: 2 RNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFESG-AQEV 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119 G+T EFL DKP FS I +F + N AE I HNA FD+GF++ EL R+ D Sbjct: 61 TGLTMEFLADKPEFSMIADKFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKITD 118 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++DTL +AR ++P RN L++LCKR G+ +HR HGALLD+ +L+DVYI + G Sbjct: 119 RASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQE 178 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR----ITKEELDEHDKTIQTLGKNA 235 +I F + + V S+ L TR ++ EL+ H+ + L K A Sbjct: 179 EIGFALP-------ESSRGGVDAASVAFMPDVLLTRPCVVASQSELEAHEARLAKLRKIA 231 Query: 236 ---IWD 238 +WD Sbjct: 232 GHVLWD 237 >gi|190571471|ref|YP_001975829.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018874|ref|ZP_03334682.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357743|emb|CAQ55194.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995825|gb|EEB56465.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 234 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/241 (39%), Positives = 144/241 (59%), Gaps = 11/241 (4%) Query: 4 KNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K+++R+IV D ETTGLD+K+ RIIEIG VEL++ T +TF +L P R + K+ Sbjct: 2 KSRLREIVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPE-RDIPYHSFKI 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++EFL+DKP FS + EF DF + N + HNA+FDV F+N EL ++N + R Sbjct: 61 HGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELGKLNAGLISSDR 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+K S LN+LCKR+ I++ R HGAL+D+ LL+ VY+++ G Sbjct: 119 VLDTLPLARKKFVGSPASLNALCKRFDISLEGRELHGALVDAQLLAKVYVELTGGLQTFL 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 F + +D + V N++ + + +E+DEH K + + N +W YI Sbjct: 179 FNNECAQDNNSTFIQHKVRNLARREHSPSI------KEIDEHKKLLDKIN-NPLWKEYIE 231 Query: 243 S 243 S Sbjct: 232 S 232 >gi|330939732|gb|EGH43019.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. pisi str. 1704B] Length = 259 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/236 (40%), Positives = 138/236 (58%), Gaps = 15/236 (6%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ + RI+EIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RAVVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR--- 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + ++D D ++ Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G Q + Sbjct: 126 VLDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT--GGQTS 183 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR----DKPL-FTRITKEELDEHDKTIQTLGK 233 N + + S ++R KP R ++ EL EH+ + T+ K Sbjct: 184 LSLAGNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHEVRMSTIAK 239 >gi|229513876|ref|ZP_04403338.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] gi|229349057|gb|EEO14014.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] Length = 247 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 85/185 (45%), Positives = 120/185 (64%), Gaps = 12/185 (6%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITDEFLKDKP + + EF DF + AE +AHNA FDVGF++ E ++ Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKTS 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINF 183 + + F Sbjct: 188 TSLQF 192 >gi|229522180|ref|ZP_04411597.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] gi|229341105|gb|EEO06110.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] Length = 247 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 85/185 (45%), Positives = 120/185 (64%), Gaps = 12/185 (6%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITDEFLKDKP + + EF DF + AE +AHNA FDVGF++ E ++ Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKTS 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINF 183 + + F Sbjct: 188 TSLQF 192 >gi|238026771|ref|YP_002911002.1| DNA polymerase III subunit epsilon [Burkholderia glumae BGR1] gi|237875965|gb|ACR28298.1| DNA polymerase III, epsilon subunit [Burkholderia glumae BGR1] Length = 240 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/238 (39%), Positives = 135/238 (56%), Gaps = 13/238 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VE+L+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEIGCVEMLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ I DF + E I HNA FD+GFI+AEL+R+ PL + + Sbjct: 60 TTEFLSDKPKFAEIAQALCDFV--RGGELIIHNAPFDIGFIDAELERLGMPPLLEHCNGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A+ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 D + + +S D P+ +++EL H + L K+ +W Sbjct: 176 VIDMLGDTGDRGGETGGSRVSFASLDLPVIAA-SEQELAAHQAQLDDLDKSVKGACVW 232 >gi|226328903|ref|ZP_03804421.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198] gi|225202089|gb|EEG84443.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198] Length = 250 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 146/246 (59%), Gaps = 27/246 (10%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS- 121 HGI+DEFL+D PSF+ I EF ++ + AE I HNA FD+GF++ E +++N+D + P+ Sbjct: 66 HGISDEFLEDCPSFADIADEFLEYI--RGAELIIHNASFDIGFMDYEFRKLNRD-IPPTE 122 Query: 122 ---RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +I D+L++AR P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G Sbjct: 123 TFCQITDSLAMARALFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMT--G 180 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL----FTRITKEELDEHDKTIQTL--- 231 Q F + ++E+ + I ++P+ R T EEL EH+ + + Sbjct: 181 GQTALAFSMEGESNNEQEQNDIQRI-----ERPVSGLRVIRATAEELAEHESRLDLVEKK 235 Query: 232 GKNAIW 237 G + +W Sbjct: 236 GGHCLW 241 >gi|311103923|ref|YP_003976776.1| DNA polymerase III subunit epsilon [Achromobacter xylosoxidans A8] gi|310758612|gb|ADP14061.1| DNA polymerase III, epsilon subunit [Achromobacter xylosoxidans A8] Length = 240 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 83/174 (47%), Positives = 114/174 (65%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD ++ RI+EIG VE+++ T ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPAQGHRIVEIGCVEMVNRMSTGNNLHIYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F+ + EF F Q AE IAHNA FDV F NAEL + + P+ + Sbjct: 60 TTEFLSDKPRFADVADEFVKFI--QGAELIAHNAAFDVKFFNAELAKTGRGPVTDYCETV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D+L AR P RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M G Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRG 171 >gi|15642231|ref|NP_231864.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586228|ref|ZP_01676018.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80] gi|121726541|ref|ZP_01679790.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52] gi|147674786|ref|YP_001217749.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395] gi|153213799|ref|ZP_01949007.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587] gi|153817083|ref|ZP_01969750.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457] gi|153820811|ref|ZP_01973478.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33] gi|227082357|ref|YP_002810908.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|229507692|ref|ZP_04397197.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229512113|ref|ZP_04401592.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229519248|ref|ZP_04408691.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229607196|ref|YP_002877844.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236] gi|254849364|ref|ZP_05238714.1| DNA polymerase III [Vibrio cholerae MO10] gi|255747069|ref|ZP_05421014.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] gi|262161386|ref|ZP_06030496.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] gi|262167744|ref|ZP_06035446.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|298500392|ref|ZP_07010197.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757] gi|9656792|gb|AAF95377.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549494|gb|EAX59520.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80] gi|121630994|gb|EAX63373.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52] gi|124115723|gb|EAY34543.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587] gi|126512351|gb|EAZ74945.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457] gi|126521603|gb|EAZ78826.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33] gi|146316669|gb|ABQ21208.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|227010245|gb|ACP06457.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|227014129|gb|ACP10339.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|229343937|gb|EEO08912.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229352078|gb|EEO17019.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229355197|gb|EEO20118.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229369851|gb|ACQ60274.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236] gi|254845069|gb|EET23483.1| DNA polymerase III [Vibrio cholerae MO10] gi|255735471|gb|EET90871.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] gi|262023809|gb|EEY42508.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|262028697|gb|EEY47351.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] gi|297541085|gb|EFH77139.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757] Length = 247 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/185 (45%), Positives = 120/185 (64%), Gaps = 12/185 (6%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITDEFLKDKP + + EF DF + AE +AHNA FDVGF++ E ++ Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFVDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKTS 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINF 183 + + F Sbjct: 188 TSLQF 192 >gi|225677154|ref|ZP_03788153.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590821|gb|EEH12049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 231 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 142/239 (59%), Gaps = 11/239 (4%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 ++K+R+IV D ETTGLD+ RIIEIG VEL++ T + F +L P R + K+ Sbjct: 2 ESKLREIVLDTETTGLDTGSGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFKI 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++EFL+DKP FS + EF DF + N + HNA+FDV F+N EL ++N + R Sbjct: 61 HGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELSKLNAGLISSDR 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+K S LN+LCKR+ I++ +R HGAL+D+ LL+ VY+++ G Sbjct: 119 VLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFL 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F + N+D + V N++ P EE+DEH K + + N +W++ I Sbjct: 179 FDNECNQDSNSTFVQHKVRNLT------PREHSPNSEEIDEHKKLLDKIN-NTLWNKCI 230 >gi|237748501|ref|ZP_04578981.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13] gi|229379863|gb|EEO29954.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13] Length = 247 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 136/239 (56%), Gaps = 17/239 (7%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL + N DRIIEIG VE+L T F ++ P R + P+AL +HG+ Sbjct: 1 MRQIVLDTETTGLYANNGDRIIEIGCVEVLSRHVTENHFHQYINPE-RDSHPDALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F+ I F D+ + AE I HNA FD+GF+NAEL R+ ++ I Sbjct: 60 TTEFLSDKPKFAEIAQAFCDYI--RGAELIIHNAPFDIGFLNAELARLGMPKVEEIAECI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR P RN L++LC+R+ I+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 118 TDSLVKARDMFPGRRNSLDALCERFEISNAHRTLHGALLDSELLAEVYLAMTRGQETLEI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-----GKNAIW 237 G + E+ + + NI + + T+EEL H++ + + G +W Sbjct: 178 GGMSIEEEEAAAKAAPLSNIHI------VVLAATEEELARHEEVLDDIEKSNKGAPCVW 230 >gi|114321140|ref|YP_742823.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227534|gb|ABI57333.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 243 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 93/243 (38%), Positives = 138/243 (56%), Gaps = 17/243 (6%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ DR+IEIG VEL+D T F +L P+ R+ EA+++HGI Sbjct: 1 MRQIVLDTETTGLEWSQGDRVIEIGCVELVDRRPTGNNFHQYLNPD-REVPQEAVEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T++FL DKP F + F ++ + +E + HNA FDVGF++ EL R+ + D + Sbjct: 60 TNDFLADKPRFHEVAERFVEYI--RGSELVIHNAAFDVGFLDYELSRLGRGWGRVEDFAS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR++HP RN L++LCKRY + + R HGALLD+ +L+DVY+ M GG + Sbjct: 118 VLDTLLLARQRHPGQRNSLDALCKRYDVDNTQRELHGALLDARILADVYLA-MTGGQKAL 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH------DKTIQTLGKNAI 236 F E + + E I L D+P + E + D+ + G Sbjct: 177 FTLDEEEAQAHEGEGG---GIRRLPSDRPRLAVVRAGEAERRAHEALLDRIDKASGGGCR 233 Query: 237 WDR 239 W R Sbjct: 234 WRR 236 >gi|88813349|ref|ZP_01128587.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231] gi|88789407|gb|EAR20536.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231] Length = 245 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 135/241 (56%), Gaps = 17/241 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + R+IEIG EL + RTF +L P+ R+ P A+++HGI Sbjct: 1 MRQIVLDTETTGLEPADGHRVIEIGCYELCYRRASGRTFHHYLNPD-REVEPGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T+EFL DKP F I ++F +F ++AE I HNA FDVGF++ E R+ D + Sbjct: 60 TNEFLADKPRFCDIATDFIEFI--RDAELIIHNAPFDVGFLDYEFSRLTGSWGRLADYCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR +HP RN L++LC RY + + RS HGALLD+ LL++VY+ M G Q Sbjct: 118 VTDTLALARERHPGQRNSLDALCTRYAVDNAQRSLHGALLDAQLLAEVYLLMT--GGQTA 175 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEH----DKTIQTLGKNAI 236 ++ + V + L +P R + E EH D+ Q +G + Sbjct: 176 LSLESGAG--LSADLALVGGVRRLDPARPRLPVVRASSAEQAEHRHWLDELDQAVGGCCV 233 Query: 237 W 237 W Sbjct: 234 W 234 >gi|253999157|ref|YP_003051220.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4] gi|253985836|gb|ACT50693.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4] Length = 234 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 86/174 (49%), Positives = 119/174 (68%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL ++ RIIEI AVE+++ T++ + V+L P+ R+ A ++HGI Sbjct: 1 MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPD-REIDAGAQEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL+DKP F+ + EF DF Q++E I HNA FDVGF+NAEL RI K ++ S I Sbjct: 60 TLEFLQDKPRFADVVGEFLDFV--QDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL +A+ P RN+L++LC+ +GI S R+ HGALLD+ LL+DVY+ M G Sbjct: 118 IDTLKMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLDAELLADVYLAMTRG 171 >gi|254429095|ref|ZP_05042802.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881] gi|196195264|gb|EDX90223.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881] Length = 246 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 137/241 (56%), Gaps = 16/241 (6%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGL+ + R+IEIG VE+ + T ++L P R+ AL +HGI Sbjct: 1 MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNNLHLYLNPE-REIDAGALAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122 + EFL DKP+F + EF F + AE + HNA FDVGF+N EL+R+ + Sbjct: 60 STEFLADKPTFDKVVDEFLAFVD--GAELVIHNAPFDVGFLNHELRRLGARYGTIEQRCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+KHP +N+L++LC+RY + HR HGALLD+ +L+DVY+ M G ++++ Sbjct: 118 VLDTLVMARQKHPGQKNNLDALCRRYFVENGHRELHGALLDAEILADVYLAMTGGQTRLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT--RITKEELDEH-DKTIQTLGKNA---I 236 G D + T I L D+P R ++ E+ H DK GKN + Sbjct: 178 LG---GNDGSEQGGDATAEAIRRLSADRPALAVVRPSESEMQRHNDKLTAIAGKNGEPTV 234 Query: 237 W 237 W Sbjct: 235 W 235 >gi|88703294|ref|ZP_01101010.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71] gi|88702008|gb|EAQ99111.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71] Length = 240 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 97/240 (40%), Positives = 136/240 (56%), Gaps = 16/240 (6%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ RIIEIG VE+ + T R F ++ P R A+++HGI Sbjct: 1 MRQIVLDTETTGLEVSQGHRIIEIGCVEMENRQLTGRHFHRYINPE-RDIDAGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122 T FL DKP FS++ +F DF + AE I HNA FD+GF+++EL R + L ++ Sbjct: 60 TATFLADKPVFSAVAKDFIDFVD--GAELIIHNAPFDIGFLDSELSRWDASALPLAQRCD 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I DTL +AR +HP RN L++LC RYG+ S R HGALLD+ +L+DVY+ M G Q Sbjct: 118 ITDTLIMARSRHPGQRNSLDALCGRYGVDNSSRELHGALLDAEILADVYLTMT--GGQTA 175 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDK---TIQTLGKNAIW 237 N+D + + V + L D+ I + EEL H+ +I G +W Sbjct: 176 LALGGNDDD--NQGRARVRGLRRLPADRVRLPVIQPSDEELAAHEGQLDSIAAAGAEPLW 233 >gi|254466659|ref|ZP_05080070.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I] gi|206687567|gb|EDZ48049.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I] Length = 241 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 95/248 (38%), Positives = 142/248 (57%), Gaps = 27/248 (10%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVEL ++ T +TF ++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELYNHMPTGKTFHEYINPE-RSMPAEAFSVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F+ I +F DF Q++ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQKPEPGAVTLRDKPVFAKIGRKFLDFV--QDSRLVIHNASFDMKFLNAELDW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L + +DTL++AR++ P S L++LC+R+ I ++R+ HGALLDS +L+DVY+ Sbjct: 118 MGLPKLPMDQALDTLAMARKRFPGSPATLDALCRRFNIDNTNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGF---KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 + ++GG Q +FG ++ +++ + VP R PL RIT EE H+ + Sbjct: 178 E-LIGGRQPDFGLSAQSSSSSAQVEDDWRPVP------RSAPLPARITAEEQAAHEAFVA 230 Query: 230 TLGKNAIW 237 LG A+W Sbjct: 231 KLGDAALW 238 >gi|313201259|ref|YP_004039917.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688] gi|312440575|gb|ADQ84681.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688] Length = 234 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 86/174 (49%), Positives = 119/174 (68%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL ++ RIIEI AVE+++ T++ + V+L P+ R+ A ++HGI Sbjct: 1 MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPD-REIDAGAQEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL+DKP F+ + EF DF Q++E I HNA FDVGF+NAEL RI K ++ S I Sbjct: 60 TLEFLQDKPRFADVVGEFLDFV--QDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL +A+ P RN+L++LC+ +GI S R+ HGALLD+ LL+DVY+ M G Sbjct: 118 IDTLKMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLDAELLADVYLAMTRG 171 >gi|254499192|ref|ZP_05111872.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12] gi|254351582|gb|EET10437.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12] Length = 232 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 132/232 (56%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+ + R+IEIG VEL+D T R F V+L P R A ++HGI Sbjct: 1 MRQIVLDTETTGIGHEQGHRVIEIGCVELIDRKLTGRHFHVYLNPE-RLVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123 +DEFL+DKP F+ SEF F AE I HNA FD+GF+N+EL+ + K D + Sbjct: 60 SDEFLQDKPLFADKVSEFLQFVG--GAELIIHNAAFDMGFLNSELRHVQWKKKLEDYCDV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL+ AR K P RN L++LCKR+GI +R HGALLD+ +L+ VY+ M G S + Sbjct: 118 FDTLTYARDKFPGQRNSLDALCKRFGIDHFNRQLHGALLDAEILAFVYLAMTGGQSSLFA 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + N + V I+ L+ P+ ELD+H ++ L K + Sbjct: 178 DVEENANN----TTVKVQEIAALRLANPIVVLAEANELDQHQIFVEFLTKKS 225 >gi|218710290|ref|YP_002417911.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32] gi|218323309|emb|CAV19486.1| DNA polymerase III, epsilon subunit [Vibrio splendidus LGP32] Length = 255 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 26/244 (10%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++++ RI+EIGAVE+++ T R F V++ P+ R EA+ Sbjct: 22 RIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYIKPD-RAIQEEAIG 80 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITDEFL DKP + I EF DF + AE +AHNA FD GF++ E +++N Sbjct: 81 VHGITDEFLIDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLNPAIGKTD 138 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ +M GG Sbjct: 139 DYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYL-LMTGG 197 Query: 179 S---QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 Q N G + E + + ++ +L R T +E++ H + + K+ Sbjct: 198 QTSLQFNAGQQEGEGESIRRAESGRKSLKVL--------RATADEVEAHQSRLDLVEKSG 249 Query: 236 --IW 237 +W Sbjct: 250 SCLW 253 >gi|330816255|ref|YP_004359960.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] gi|327368648|gb|AEA60004.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] Length = 240 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 135/240 (56%), Gaps = 17/240 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VE+L+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRIIEIGCVEMLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ + DF + AE I HNA FD+GFI+AE +R+ PL+ + Sbjct: 60 TTEFLSDKPKFAEVAHAICDFV--RGAELIIHNAPFDIGFIDAEFERVGLPPLNQHCDGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237 + D + +SL P+ E +LD+ DK+++ +W Sbjct: 178 DMLGDGDD--EGGASGAARVSLATLALPVLAASEDELAAHLAQLDDLDKSVK---GACVW 232 >gi|197284137|ref|YP_002150009.1| DNA polymerase III subunit epsilon [Proteus mirabilis HI4320] gi|194681624|emb|CAR40653.1| DNA polymerase III, epsilon subunit [Proteus mirabilis HI4320] Length = 252 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 96/250 (38%), Positives = 150/250 (60%), Gaps = 21/250 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL+D PSF+ I EF + + AE I HNA FD+GF++ E Q++N+D PL + Sbjct: 66 HGISDEFLEDCPSFAEIADEFLAYI--RGAELIIHNASFDIGFMDYEFQKLNRDIPLTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR P RN+L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCQITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTGGQT 183 Query: 180 QINFGF--KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKN 234 + F ++NE++ + ++ V + L+ + + EEL H+ + + G + Sbjct: 184 ALAFSMEGESNEEQKGDDIQRIVRPVRGLR-----VIKASAEELVAHEARLDLVVKKGGH 238 Query: 235 AIWDRYISSN 244 +W +SN Sbjct: 239 CLWRPAPASN 248 >gi|270156747|ref|ZP_06185404.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968] gi|289164806|ref|YP_003454944.1| DNA polymerase III, epsilon chain [Legionella longbeachae NSW150] gi|269988772|gb|EEZ95026.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968] gi|288857979|emb|CBJ11839.1| putative DNA polymerase III, epsilon chain [Legionella longbeachae NSW150] Length = 233 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 136/232 (58%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG+ ++ R+IEIG VEL+D T F V+L P R A ++HGI Sbjct: 1 MRQVVLDTETTGIGHEHGHRVIEIGCVELIDRKLTGNHFHVYLNPQ-RLVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123 ++EFL+DKP F+ + +FW F + AE I HNA FDVGF+N+ELQ IN K +I Sbjct: 60 SNEFLQDKPLFADVAEKFWRFIS--GAELIIHNAPFDVGFLNSELQLINWNKKLEVYCKI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL +AR K+P RN L++LCKRYGI +R HGALLD+ +L+ VY+ M G + + Sbjct: 118 TDTLVLAREKYPGQRNSLDALCKRYGIDHFNRELHGALLDAEILAFVYLAMTGGQTSL-- 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 F E+ K+ ++ L + + + EEL+ H I L K + Sbjct: 176 -FAEVEETSLHVNSKSQETVA-LHLENSVVLPASAEELESHQLFIDFLHKKS 225 >gi|254514367|ref|ZP_05126428.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3] gi|219676610|gb|EED32975.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3] Length = 240 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 96/241 (39%), Positives = 138/241 (57%), Gaps = 18/241 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ RIIEIG VEL + T R F ++ P R A+++HGI Sbjct: 1 MRQIVLDTETTGLEVSQGHRIIEIGCVELQNRLLTGRHFHRYINPE-RDIDAGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122 T FL DKP FS++ +F DF + AE I HNA FD+GF+++EL RI+ L ++ Sbjct: 60 TATFLADKPVFSAVAKDFVDFVD--GAELIIHNAPFDIGFLDSELSRIDPAALPLAQRCE 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I DTL +AR +HP RN L++LC+RY + S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 ITDTLVMARSRHPGQRNSLDALCQRYAVDNSSRDLHGALLDAEILADVYLTMTGGQTALA 177 Query: 183 FGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRI--TKEELDEHDK---TIQTLGKNAI 236 G + + +T P + L ++P I + EL H+ +I G + Sbjct: 178 LGGDDGD-----SQGRTRPRGLIRLPENRPRLPVIEPSDSELAAHEAQLDSIAAAGTEPL 232 Query: 237 W 237 W Sbjct: 233 W 233 >gi|161525206|ref|YP_001580218.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC 17616] gi|189350055|ref|YP_001945683.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC 17616] gi|160342635|gb|ABX15721.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC 17616] gi|189334077|dbj|BAG43147.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 244 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 96/238 (40%), Positives = 135/238 (56%), Gaps = 13/238 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL++++ DRIIEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARSGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ I + DF + AE I HNA FD+GF++AE + P + + Sbjct: 60 TTEFLSDKPKFAEIAHQILDFV--KGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 +D +SL D P+ T EEL EH + L K+ +W Sbjct: 176 VIDMLDDDAGGAGAANGQRVSLAALDLPVLAA-TAEELAEHQAQLDDLDKSVKGACVW 232 >gi|134295347|ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4] gi|134138504|gb|ABO54247.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 244 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 136/240 (56%), Gaps = 17/240 (7%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ ++ DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRSGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + + DF + AE I HNA FD+GF++AE R+ P + Sbjct: 60 TTEFLSDKPKFAEVADQIRDFV--KGAELIIHNAPFDLGFLDAEFARLGLPPFIEHCDGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLAEAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237 +D ISL D P+ E +LDE DK+++ +W Sbjct: 176 VIDMLDDAGADGGTANGQRISLASLDLPVVAASDDELAAHQAQLDELDKSVK---GTCVW 232 >gi|221201955|ref|ZP_03574991.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] gi|221204915|ref|ZP_03577932.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] gi|221213892|ref|ZP_03586865.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] gi|221166069|gb|EED98542.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] gi|221175772|gb|EEE08202.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] gi|221178038|gb|EEE10449.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] Length = 244 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 96/238 (40%), Positives = 134/238 (56%), Gaps = 13/238 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ I + DF + AE I HNA FD+GF++AE + P + + Sbjct: 60 TTEFLSDKPKFAEIAHQILDFV--KGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 +D +SL D P+ T EEL EH + L K+ +W Sbjct: 176 VIDMLDDDAGGAGAANGQRVSLAALDLPVLAA-TAEELAEHQAQLDDLDKSVKGACVW 232 >gi|88800079|ref|ZP_01115649.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297] gi|88777205|gb|EAR08410.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297] Length = 238 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 117/180 (65%), Gaps = 12/180 (6%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGL+ +K DRI+E+G VE++D T R F ++ P R E + +HGI Sbjct: 1 MRQVVLDTETTGLNPTKGDRIVEVGCVEMVDRKLTGRHFHYYINPE-RDIPDEVVAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----- 120 ++ +KD P F I E W + + AE + HNA FD+GF+NAE +R ++ +P Sbjct: 60 DNDKVKDSPKFRDIAVELWTWL--EGAELVIHNAAFDMGFLNAEFERFAQEQREPFEKLE 117 Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++DTL +AR KHP S+ L++LCKRYGI SHR+ HGALLDS +L+DVY+ M+ GG Sbjct: 118 TVCGVLDTLKVARDKHPGSKVSLDALCKRYGIDNSHRTLHGALLDSEILADVYL-MLTGG 176 >gi|254796828|ref|YP_003081665.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str. Illinois] gi|254590057|gb|ACT69419.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str. Illinois] Length = 228 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 97/241 (40%), Positives = 142/241 (58%), Gaps = 27/241 (11%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 RK++ D ETTGLD KN DR+IEIG VE++D+ T F ++L P R+ S EA ++HGIT Sbjct: 5 RKVILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPE-REISKEATRVHGIT 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 E L D P F I +F F ++E +AHNA FD+ F+N+EL R + L +ID Sbjct: 64 FEQLADSPKFIDIADDFLQFIG--SSEIVAHNASFDIRFLNSELIRARQRRLIKLENVID 121 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR+ P S L++LC+R+ I++ R HGALLD+ LL+ VYI++ GSQ++ F Sbjct: 122 TLAMARKIFPGSPASLDALCRRFRISLEQREFHGALLDAQLLARVYIELS-KGSQVSMSF 180 Query: 186 -----KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++E + FKE +K + IT EE H + I+ L K+ +WD Sbjct: 181 LEGSSASSEKKMFKEREKLI---------------ITPEESLAHSELIKRL-KDPLWDEI 224 Query: 241 I 241 + Sbjct: 225 L 225 >gi|58040389|ref|YP_192353.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H] gi|58002803|gb|AAW61697.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H] Length = 228 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 97/235 (41%), Positives = 134/235 (57%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTG D DRIIEI A+EL+D T + V + P R EA K+HG Sbjct: 3 RSILFDTETTGFDPDMGDRIIEIAALELIDDLPTGEAYHVLIHPE-RDIPAEATKVHGFR 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIID 125 E L+ KP FS + F +F ++ IAHNA+FD F+NAEL+ ++PLD SR ID Sbjct: 62 IEDLEGKPIFSEVADGFLEFIG--DSPMIAHNARFDFKFVNAELKACGREPLDYASRAID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +AR+K+P L++LC+R+GI +S R H ALLD LL++VY+++M GG Q G Sbjct: 120 TVEMARKKYPGLPASLDALCRRFGIDLSQRGTHNALLDCKLLAEVYVELM-GGRQRGLGL 178 Query: 186 K-TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + R E + N K P T EEL H+ + T+ K+A+W R Sbjct: 179 AGPSRSRSMTEGINALANRKPRKMAPP-----TAEELQAHEAFVSTI-KDAVWLR 227 >gi|227357997|ref|ZP_03842339.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906] gi|227161732|gb|EEI46764.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906] Length = 252 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 96/250 (38%), Positives = 149/250 (59%), Gaps = 21/250 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL+D PSF+ I EF + + AE I HNA FD+GF++ E Q++N+D PL + Sbjct: 66 HGISDEFLEDCPSFAEIADEFLAYI--RGAELIIHNASFDIGFMDYEFQKLNRDIPLTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR P RN+L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCQITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTGGQT 183 Query: 180 QINFGF--KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKN 234 + F + NE++ + ++ V + L+ + + EEL H+ + + G + Sbjct: 184 ALAFSMEGEPNEEQKGDDIQRIVRPVRGLR-----VIKASAEELVAHEARLDLVVKKGGH 238 Query: 235 AIWDRYISSN 244 +W +SN Sbjct: 239 CLWRPAPASN 248 >gi|86146863|ref|ZP_01065182.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] gi|85835315|gb|EAQ53454.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] Length = 255 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 93/244 (38%), Positives = 142/244 (58%), Gaps = 26/244 (10%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++++ RI+EIGAVE+++ T R F V++ P+ R EA+ Sbjct: 22 RIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRRLTGRHFHVYIKPD-RAIQEEAIG 80 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITDEFL DKP + I EF DF + AE +AHNA FD GF++ E +++N Sbjct: 81 VHGITDEFLIDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLNPAIGKTD 138 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ +M GG Sbjct: 139 DYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYL-LMTGG 197 Query: 179 S---QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 Q N G + E + + ++ +L R T +E++ H + + K+ Sbjct: 198 QTSLQFNAGQQEGEGESIRRAESGRKSLKVL--------RATADEVEAHQSRLDLVEKSG 249 Query: 236 --IW 237 +W Sbjct: 250 SCLW 253 >gi|21230449|ref|NP_636366.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769557|ref|YP_244319.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. campestris str. 8004] gi|188992765|ref|YP_001904775.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. campestris str. B100] gi|21112012|gb|AAM40290.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574889|gb|AAY50299.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. campestris str. 8004] gi|167734525|emb|CAP52735.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. campestris] Length = 245 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 137/239 (57%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLRPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T EFL DKP F+ + EF + + AE I HNA FD+GF++ EL + +D + Sbjct: 60 TLEFLADKPVFAEVVEEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDQFGRIIDRAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 FG E + SLL +P +T EL H+ ++ L K A+WD Sbjct: 178 FGAMDAGQHAEGGEGMIAFDPSLLL-PRPRVV-VTPSELQAHEARLERLRKKAGRALWD 234 >gi|319775991|ref|YP_004138479.1| DNA polymerase III subunit epsilon [Haemophilus influenzae F3047] gi|329123857|ref|ZP_08252414.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus aegyptius ATCC 11116] gi|317450582|emb|CBY86799.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3047] gi|327468820|gb|EGF14294.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus aegyptius ATCC 11116] Length = 256 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 99/260 (38%), Positives = 146/260 (56%), Gaps = 29/260 (11%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG+ + RIIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMSQLGAHYEGHRIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E ++N + Sbjct: 62 IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFHKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINF---------GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 G F + +++ +E K V LK +P T +EL H + + Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQP-----TNDELQAHLEFL 233 Query: 229 QTL----GKNAIWDRYISSN 244 + + G N +WD+ +N Sbjct: 234 KMMNKKSGNNCLWDKRFGNN 253 >gi|167949084|ref|ZP_02536158.1| DNA polymerase III, epsilon subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 203 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 82/181 (45%), Positives = 120/181 (66%), Gaps = 7/181 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VE++D + F +L P+ R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEPQQGHRIIEIGCVEMIDRRLSGNNFHQYLQPD-REIDAGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PL-DPSR 122 T+EFL DKP F+ + ++F D+ + AE I HNA FDVGF+N ELQ + D P+ + Sbjct: 60 TNEFLADKPRFADLAADFLDYI--RGAELIIHNAPFDVGFLNHELQLMGADSPPIGELCA 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL +A++ HP RN L++LCKRY + + R HGALLD+ +L+DVY+ M G + ++ Sbjct: 118 VIDTLVMAKKMHPGQRNSLDALCKRYDVDNTQRELHGALLDAEILADVYLAMTGGQATLS 177 Query: 183 F 183 Sbjct: 178 L 178 >gi|254508645|ref|ZP_05120760.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16] gi|219548402|gb|EED25412.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16] Length = 247 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 97/252 (38%), Positives = 143/252 (56%), Gaps = 33/252 (13%) Query: 5 NKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 N+ R +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R E Sbjct: 8 NQHRIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQAE 66 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A+++HGITDEFL DKP + + +EF +F + AE +AHNA FD GF++ E + L Sbjct: 67 AVQVHGITDEFLVDKPEYQDVHAEFLEFI--KGAELVAHNAPFDTGFMDYEFEM-----L 119 Query: 119 DPS--------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 DPS ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DV Sbjct: 120 DPSIGKTDDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADV 179 Query: 171 YIKMMVGGS---QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 Y+ +M GG Q N G D + K+ LK R + +EL+ H Sbjct: 180 YL-LMTGGQTSLQFNAGNSDGSDVGGESIKRVASGRKALK-----VIRASADELEAHQNR 233 Query: 228 IQTLGKNA--IW 237 + + K+ +W Sbjct: 234 LDIVEKSGSCLW 245 >gi|192359256|ref|YP_001982513.1| DNA polymerase III subunit epsilon [Cellvibrio japonicus Ueda107] gi|190685421|gb|ACE83099.1| DNA polymerase III, epsilon subunit [Cellvibrio japonicus Ueda107] Length = 237 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 94/241 (39%), Positives = 134/241 (55%), Gaps = 17/241 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ RIIEIG VEL++ T R + ++ P R+ A +HGI Sbjct: 1 MRQIVLDTETTGLEYSQGHRIIEIGCVELMNRRLTGRHYHQYINPE-REVDAGAFAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 ++ L DKP F+ I +F +F + AE I HNA FD+GFI+ EL + Sbjct: 60 SNAMLNDKPVFARIVDDFLNFVGD--AELIIHNAAFDIGFIDHELNMLRPGFGSIKGRCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL +AR KHP +N+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G Q + Sbjct: 118 VIDTLLLARNKHPGQKNNLDALCKRYGVDNSQRDLHGALLDAEILADVYLAMT--GGQTS 175 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDKTIQTL----GKNAI 236 N+ + E I L +P I + EEL H++ + + G N + Sbjct: 176 LSLGGNQAK--AEGGGNQEGIRRLSSQRPALRVISASAEELQAHEEKLAAIARSSGDNCL 233 Query: 237 W 237 W Sbjct: 234 W 234 >gi|145299712|ref|YP_001142553.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp. salmonicida A449] gi|142852484|gb|ABO90805.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp. salmonicida A449] Length = 244 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 87/190 (45%), Positives = 123/190 (64%), Gaps = 11/190 (5%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG+++ RIIEIG VE+++ T + V++ P+ R PEA++ Sbjct: 8 RQIILDTETTGMNTAGGPIYLGHRIIEIGCVEVINRKLTGNHYHVYIKPD-RLVDPEAIQ 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLD 119 +HGITD FL DKPSFS I ++F DF + AE IAHNA FDV F++ E ++ N D Sbjct: 67 VHGITDVFLADKPSFSQIANDFIDFI--RGAELIAHNAPFDVSFMDYEFGKLGLNFKTRD 124 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I DTL+IAR P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G + Sbjct: 125 ICSITDTLAIARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 184 Query: 180 QINFGFKTNE 189 ++N +++E Sbjct: 185 KLNLATESSE 194 >gi|104782586|ref|YP_609084.1| DNA polymerase III subunit epsilon [Pseudomonas entomophila L48] gi|95111573|emb|CAK16293.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudomonas entomophila L48] Length = 251 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 95/241 (39%), Positives = 133/241 (55%), Gaps = 11/241 (4%) Query: 1 MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDQRLVILDTETTGMPVGDGHRIIEIGCVEVMGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPL 118 + +HGITD FL KP F + EF++F + A + HNA FDVGFIN E + + D Sbjct: 60 IGVHGITDAFLVGKPRFGDVAQEFFEFI--EGATLVIHNAAFDVGFINNEFALLGQHDRA 117 Query: 119 DPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D S+ I+DTL +AR +HP RN L++LCKRYGI S R HGALLDS LL+DVY+ M Sbjct: 118 DISQHCSILDTLMMARSRHPGQRNSLDALCKRYGIDNSGRELHGALLDSELLADVYLAMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTLGKN 234 G Q + + + + T I + R +EEL H + + + K+ Sbjct: 178 --GGQTSLSLAGDGAQSEDGQGGTGSEIRRISGRAAGRVIMANEEELQAHAERLAAIAKS 235 Query: 235 A 235 A Sbjct: 236 A 236 >gi|152978551|ref|YP_001344180.1| DNA polymerase III subunit epsilon [Actinobacillus succinogenes 130Z] gi|150840274|gb|ABR74245.1| DNA polymerase III, epsilon subunit [Actinobacillus succinogenes 130Z] Length = 259 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 99/250 (39%), Positives = 145/250 (58%), Gaps = 16/250 (6%) Query: 7 MRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R+IV D ETTG++ + IIEIGAVEL++ T R +++ P+ R PEA+K Sbjct: 8 IRQIVLDTETTGMNQFGAHYEGHCIIEIGAVELINRKYTGRKLHLYVKPD-RPIDPEAIK 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLD 119 +HGITDE L DKP FS++ EF DF ++AE + HNA FDVGF++ E ++ I+ D Sbjct: 67 VHGITDEMLADKPDFSTVAQEFIDFI--KDAELLIHNAPFDVGFMDYEFRKHHIDIKTAD 124 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + DTL +ARR++P RN+L++LC R I S R+ HGALLD+ +L DVY+ M GG Sbjct: 125 ICTVTDTLQMARRQYPGKRNNLDALCDRLHIDNSKRTLHGALLDAEILGDVYLA-MTGGQ 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT-RITKEELDEHDKTIQTLGK----N 234 F + E K E+ I + + L +T+EEL H + + + K N Sbjct: 184 VSLFAEEETEISVQKTEEIEEEFIPVQVSSEGLIALPLTEEELAAHTEYLSLINKKSKDN 243 Query: 235 AIWDRYISSN 244 IW + +S + Sbjct: 244 CIWIKRLSPD 253 >gi|83720697|ref|YP_443303.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis E264] gi|257139540|ref|ZP_05587802.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis E264] gi|83654522|gb|ABC38585.1| DNA polymerase III, epsilon subunit [Burkholderia thailandensis E264] Length = 241 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 137/238 (57%), Gaps = 13/238 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIE+G VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL+DKP F+ I + DF ++AE I HNA FD+GF++AE + + + Sbjct: 60 TTEFLRDKPKFADIVDQLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPAFSDHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 ++ K P ++ D P+ T EEL +H+ + L K+ +W Sbjct: 176 VIDMLDEAGDAHRKGDEPQMAFSGLDLPVLA-ATDEELADHEAQLDALDKSVKGACVW 232 >gi|170722630|ref|YP_001750318.1| DNA polymerase III subunit epsilon [Pseudomonas putida W619] gi|169760633|gb|ACA73949.1| DNA polymerase III, epsilon subunit [Pseudomonas putida W619] Length = 254 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 1 MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ S+ RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRLVILDTETTGMPVSEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINK 115 + +HGITD FL KP F + EF++F Q A + HNA FDVGFIN E QR Sbjct: 60 INVHGITDAFLVGKPRFGDVAEEFFEFI--QGATLVIHNAAFDVGFINNEFALLGQRDRA 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D I+DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M Sbjct: 118 DISQHCTILDTLLLARARHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G + ++ + + + R T EEL+ H + + + K+A Sbjct: 178 GGQTSLSLAGNGADGDNEGQGSGGSEIRRITGRAPGRVIMATAEELEAHAERLAAIAKSA 237 >gi|206559631|ref|YP_002230392.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia J2315] gi|198035669|emb|CAR51556.1| DNA polymerase III, epsilon chain [Burkholderia cenocepacia J2315] Length = 244 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 17/240 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ + + DF ++AE I HNA FD+GF++AE R+ P + Sbjct: 60 TTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237 +D +SL D P+ E +LDE DK+++ +W Sbjct: 176 VIDMLDDASADGGAANGKRVSLAALDLPVVVASDDELAAHQAQLDELDKSVK---GTCVW 232 >gi|290476066|ref|YP_003468963.1| DNA polymerase III subunit epsilon [Xenorhabdus bovienii SS-2004] gi|289175396|emb|CBJ82199.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Xenorhabdus bovienii SS-2004] Length = 249 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 95/244 (38%), Positives = 145/244 (59%), Gaps = 23/244 (9%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F +++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHLYIKPE-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119 HGI+DEFL+DKP+F+ I EF +F + AE I HNA FD+GF++ E +++N+D D Sbjct: 66 HGISDEFLQDKPTFADIADEFIEFI--RGAELIIHNATFDIGFMDYEFRKLNRDIPPTAD 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +AR+ P RN+LN+LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCTITDSLVLARQLFPGKRNNLNALCDRYQIDNSKRTLHGALLDAEILSDVYLTMTGGQT 183 Query: 180 QINFGFK---TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GK 233 + F + + + + +K T P L K ++ + EEL +H+ + + G Sbjct: 184 SLTFSMEGEISGGAQMAEIQKITRPQTGL----KVIYA--SDEELLQHESRLDLVEKKGG 237 Query: 234 NAIW 237 + +W Sbjct: 238 SCLW 241 >gi|77166266|ref|YP_344791.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC 19707] gi|254435200|ref|ZP_05048707.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27] gi|76884580|gb|ABA59261.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC 19707] gi|207088311|gb|EDZ65583.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27] Length = 243 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 99/251 (39%), Positives = 140/251 (55%), Gaps = 24/251 (9%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K RIIEIG VEL +T RTF +L P R+ ALK+HG+ Sbjct: 1 MRQIILDTETTGLEPKEGHRIIEIGGVELSCRRRTGRTFHCYLNPE-REVDKGALKIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-------QRINKDPL 118 ++EFL DKP F I EF F + AE + HNA FDVGF++ EL +I+ D Sbjct: 60 SNEFLSDKPRFIEIAEEFLAFI--EGAELVIHNAPFDVGFLDHELCLLGSKWGKISTD-- 115 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +++DTL +AR++HP +N+L++LCKRYGI S R HGALLD+ +L+ VY+ M G Sbjct: 116 --CQVLDTLQLARQRHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILAGVYLAMT--G 171 Query: 179 SQINFGFKTNEDRF--FKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----G 232 Q++ D F+ +S +R R ++EE HD + + G Sbjct: 172 GQVSLSLHEYGDNGLPFRVGGGNYRPVS-AERASLTIARASREERMAHDARLTAIDKASG 230 Query: 233 KNAIWDRYISS 243 +W + SS Sbjct: 231 GACLWRQLDSS 241 >gi|167582322|ref|ZP_02375196.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis TXDOH] gi|167620419|ref|ZP_02389050.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis Bt4] Length = 241 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 137/238 (57%), Gaps = 13/238 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIE+G VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL+DKP F+ I + DF ++AE I HNA FD+GF++AE + + + Sbjct: 60 TTEFLRDKPKFADIVDQLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPAFSDHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 ++ K P ++ D P+ T EEL +H+ + L K+ +W Sbjct: 176 VIDMLDEAGDAHRKGDEPRMAFSGLDLPVLA-ATDEELADHEAQLDALDKSVKGACVW 232 >gi|301168790|emb|CBW28381.1| DNA polymerase III epsilon subunit [Haemophilus influenzae 10810] Length = 255 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 100/259 (38%), Positives = 149/259 (57%), Gaps = 28/259 (10%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC+R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINFGFKTNEDRFF-------KEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQ 229 G F ++ E EE K+ + S LK +P T +EL H + ++ Sbjct: 179 GQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLEFLK 233 Query: 230 TL----GKNAIWDRYISSN 244 + G N +WD+ +N Sbjct: 234 MMNKKSGNNCLWDKRFGNN 252 >gi|167034708|ref|YP_001669939.1| DNA polymerase III subunit epsilon [Pseudomonas putida GB-1] gi|166861196|gb|ABY99603.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1] Length = 252 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 132/240 (55%), Gaps = 8/240 (3%) Query: 1 MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPL 118 + +HGITD FL KP F + EF++F Q A + HNA FDVGFIN E I + D Sbjct: 60 INVHGITDAFLVGKPRFGDVAEEFFEFI--QGATLVIHNAAFDVGFINNEFALIGQQDRA 117 Query: 119 DPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D S+ I+DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M Sbjct: 118 DVSQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G + ++ + E + R + EEL+ H + + + K+A Sbjct: 178 GGQTSLSLAGHGADAEGEGSEAGGSEIRRITGRTPGRVIMASAEELEAHAERLAAIAKSA 237 >gi|119471754|ref|ZP_01614114.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Alteromonadales bacterium TW-7] gi|119445377|gb|EAW26665.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Alteromonadales bacterium TW-7] Length = 237 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 142/237 (59%), Gaps = 13/237 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+D K RIIEIG VEL++ T F V++ P R EA+ +HGIT Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RSIEEEAIDVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSRI 123 +EFL+DKP + I EF+D+ + AE + HNA FDVG ++ E +N+ + D ++ Sbjct: 63 NEFLRDKPLYRDIAQEFFDYI--KGAELVIHNAPFDVGHMDNEFALLNQGFPNTHDYCQV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR HP +N+L++LC+RY I + R+ HGALLDS +L+DVY+ M G +++N Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDIDNAKRTLHGALLDSEILADVYLAMTGGQTKLN- 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIW 237 N+D ++++ + ++ +R + R T EE H+ + + G +W Sbjct: 180 -LNQNKDDGSEQQQGGIRRLN-SERAPLVVLRATDEEQSAHEARLDLVNKEGGQCLW 234 >gi|260767799|ref|ZP_05876734.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|260617308|gb|EEX42492.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] Length = 246 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/243 (38%), Positives = 138/243 (56%), Gaps = 22/243 (9%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA++ Sbjct: 11 RIVVLDTETTGMNLEGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RAIQDEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-----KD 116 +HGITDEFL DKP + + EF DF + AE +AHNA FDVGF++ E +++ D Sbjct: 70 VHGITDEFLVDKPEYKDVHEEFLDFI--RGAELVAHNAPFDVGFMDYEFSKLSIPTAKTD 127 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 L ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 128 EL--CKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTG 185 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA- 235 G + + F + E+ K V R R T +E+ H + + K+ Sbjct: 186 GQTSLQFSGSSQENGMGAGAIKRVAE----GRKALKVLRATADEIQAHQDRLDIVEKSGT 241 Query: 236 -IW 237 +W Sbjct: 242 CLW 244 >gi|323526835|ref|YP_004228988.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001] gi|323383837|gb|ADX55928.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001] Length = 244 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/174 (46%), Positives = 114/174 (65%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRIIE+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRIIEVGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ I EF DF Q A+ I HNA FD+GF++AE + P+ I Sbjct: 60 TTEFLSDKPKFAEIADEFRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171 >gi|30248167|ref|NP_840237.1| DNA polymerase III (epsilon chain) protein [Nitrosomonas europaea ATCC 19718] gi|30180052|emb|CAD84052.1| probable DNA polymerase III (epsilon chain) protein [Nitrosomonas europaea ATCC 19718] Length = 232 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/239 (38%), Positives = 137/239 (57%), Gaps = 15/239 (6%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR + D ETTGLD + RI+EI AVE+ + T+R F +L P GR++ AL++HG+ Sbjct: 1 MRYVFLDTETTGLDPALGHRIVEIAAVEVCNRRLTDRHFHRYLNP-GRESDEGALRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T EFL+DKP F + SEF +F +AE HNA FDVGFIN EL I + + +I Sbjct: 60 TREFLRDKPVFQDVCSEFLEFI--ADAEIFIHNAPFDVGFINRELDLIRFESMQNHCLQI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +A+ HP RN+L++LC+RY I SHR+ HGALLD+ LL++VY+ M G + Sbjct: 118 IDTLVLAKELHPGKRNNLDALCERYQIDNSHRTLHGALLDAELLAEVYLAMTRGQESLLM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 R + P + ++ + T+ EL+ H + ++ + N +W+ Sbjct: 178 EMDAPASR-----QADNPAVGKVENLALIVQPATQAELELHSRLVERINAESKGNCLWN 231 >gi|167562346|ref|ZP_02355262.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis EO147] gi|167574356|ref|ZP_02367230.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis C6786] Length = 240 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/244 (38%), Positives = 137/244 (56%), Gaps = 13/244 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P GR + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRVIEIGCVELLNRRLTGNNLHFYVNP-GRDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F+ I E DF ++AE I HNA FD+GF++AE + + + Sbjct: 60 TTEFLSDKPKFAEIVDELRDFV--RDAELIIHNAPFDLGFLDAEFSLLGLPTFTDHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 ++ P ++ D P+ T +EL H+ + L K+ +W + Sbjct: 176 VIDMLDEGGDAHRNGDAPRMAFSGLDLPVLA-ATDDELAAHEAQLDALDKSVKGACVWRK 234 Query: 240 YISS 243 S Sbjct: 235 EAGS 238 >gi|146307095|ref|YP_001187560.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp] gi|145575296|gb|ABP84828.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] Length = 252 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/221 (41%), Positives = 130/221 (58%), Gaps = 11/221 (4%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ + RIIEIG VELL T R F V+L P+ R+ A+ +HGIT Sbjct: 9 RYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPD-REIDEGAIAVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122 +E++ DKP F + EF++F + A+ I HNA FDVGFIN E + + D D Sbjct: 68 NEYVADKPRFRDVADEFYEFI--KGAQLIIHNAAFDVGFINNEFALLGQSERADVSDYCS 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR +HP RN L++LCKRYG+ S+R HGALLDS +L+DVY+ M G + ++ Sbjct: 126 VLDTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLAMTGGQTHLS 185 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 + D ++ P I L +P TR+ + DE Sbjct: 186 LAGE-GADSDGSGRQQATP-IRRLDAARPR-TRVIRASEDE 223 >gi|37524935|ref|NP_928279.1| DNA polymerase III subunit epsilon [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784361|emb|CAE13238.1| DNA polymerase III epsilon chain [Photorhabdus luminescens subsp. laumondii TTO1] Length = 248 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 143/246 (58%), Gaps = 27/246 (10%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA ++ Sbjct: 7 RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIQPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119 HGI+DEFL+DKP F+ I EF +F + AE I HNA FD+GFI+ E ++N+D D Sbjct: 66 HGISDEFLQDKPLFADIADEFIEFI--RGAELIIHNAPFDIGFIDYEFGKLNRDIPPTAD 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCKITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLDAEILSDVYLIMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKR-DKPLFT----RITKEELDEHDKTIQTL--- 231 + F + E + N+S ++R +P T EEL H+ + + Sbjct: 184 SLAFSMEG--------EIASGANVSEIQRITRPQMALKVIYATDEELAAHESRLDLVEKK 235 Query: 232 GKNAIW 237 G + +W Sbjct: 236 GGSCLW 241 >gi|145628970|ref|ZP_01784769.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21] gi|144978473|gb|EDJ88196.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21] Length = 256 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 99/260 (38%), Positives = 147/260 (56%), Gaps = 29/260 (11%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINF---------GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 G F + +++ +E K V LK +P T +EL H + + Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKAAEEIKSAVDFSHNLKLLQP-----TNDELQAHLELL 233 Query: 229 QTL----GKNAIWDRYISSN 244 + L G N +WD+ +N Sbjct: 234 KMLNKKSGNNCLWDKRFGNN 253 >gi|329894914|ref|ZP_08270713.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088] gi|328922643|gb|EGG29978.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088] Length = 247 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/185 (45%), Positives = 118/185 (63%), Gaps = 11/185 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S R+IEIG VEL++ + R F ++ P R+ P A+++HGI Sbjct: 1 MRQIVLDTETTGLETSDGHRVIEIGCVELINRRLSGRHFHQYINPQ-REVDPGAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----- 120 ++EFL+DKP FS+I EF +F + AE I HNA FD+GF++ EL ++ P Sbjct: 60 SNEFLQDKPLFSAIADEFLEFI--KGAELIIHNAPFDIGFLDYELSLESERRAAPMPTVE 117 Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +IDTL +ARRKHP RN L++LC RY + S R HGALLDS +L+DVY+ M G Sbjct: 118 SLCGVIDTLVMARRKHPGQRNTLDALCTRYDVDNSSRDLHGALLDSEILADVYLAMTGGQ 177 Query: 179 SQINF 183 + + Sbjct: 178 TALTL 182 >gi|254437617|ref|ZP_05051111.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 307] gi|198253063|gb|EDY77377.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 307] Length = 242 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 146/251 (58%), Gaps = 28/251 (11%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + S+ DRI+EIGA+EL ++ T RT+ ++ P R A +HGI Sbjct: 1 MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPK-RSMPAGAFGIHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F+ I F DF +A+ + HNA FD+ F+NAEL Sbjct: 60 GPDLLDPPQTPTAGQVILRDKPVFADIAQAFVDFIG--DAKLVIHNAAFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +N+ L + +DTL IAR+K P S L++LC+R+GI S+R+ HGALLDS +L++VY+ Sbjct: 118 VNRPLLPMDQSLDTLGIARKKFPGSPASLDALCRRFGIDNSNRTLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINF---GFKTNEDRFFKE-EKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 + ++GG Q + G +++ + E E + P R PL +I E+ H I Sbjct: 178 E-LIGGRQPDLVMGGQTSSKSKTAAEGEWRAQP------RPTPLAPKIKAAEVGAHAAFI 230 Query: 229 QTLGKNAIWDR 239 ++LG+ A+W++ Sbjct: 231 KSLGETALWNK 241 >gi|71907224|ref|YP_284811.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Dechloromonas aromatica RCB] gi|71846845|gb|AAZ46341.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Dechloromonas aromatica RCB] Length = 238 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/242 (39%), Positives = 138/242 (57%), Gaps = 24/242 (9%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD ++ RIIE+ +E+++ T ++ P R+ A +HGI Sbjct: 1 MRQIVLDTETTGLDPRSGHRIIEVACIEMVNRRFTGHHLHKYINPE-REIDEGAQAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ I EF +F N AE I HNA FD+GF+NAEL R+ + P+ + + Sbjct: 60 TLEFLADKPKFADIADEFLEFIN--GAELIIHNAPFDIGFLNAELDRLGRVPVGTICNGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +A+ HP RN L++LC+RY I S R+ HGALLD+ LL+DV++ M G + + Sbjct: 118 IDTLRMAKELHPGKRNSLDALCERYEIDNSSRTLHGALLDTELLADVFLAMTRGQNSL-- 175 Query: 184 GFKTNEDRFFKEEKKTVPNISL---LKRDKPL-FTRITKEELDEHDKTIQTLGKNA---- 235 + + + PNI ++ KPL R EE+ EH+ + + K + Sbjct: 176 --------MIEPDAEPRPNIGADGQVRERKPLSVRRAAPEEIAEHETVLAAIDKESKGAC 227 Query: 236 IW 237 IW Sbjct: 228 IW 229 >gi|251792047|ref|YP_003006767.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus NJ8700] gi|247533434|gb|ACS96680.1| DNA polymerase III, epsilon subunit [Aggregatibacter aphrophilus NJ8700] Length = 254 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 97/252 (38%), Positives = 150/252 (59%), Gaps = 22/252 (8%) Query: 2 IRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 I+ ++ R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 3 IQTHQNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVD 61 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA+K+HGITDE L DKP FS I +EF ++ + AE + HNA FDVGF++ E +++N Sbjct: 62 PEAIKVHGITDEMLADKPDFSQIANEFIEYI--KGAELLIHNAPFDVGFMDYEFRKLNL- 118 Query: 117 PL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P+ D + DTL +AR+ +P +N+L++LC R I S R+ HGALLD+ +L+DVY+ Sbjct: 119 PIKTNDICTVTDTLVMARQMYPGKKNNLDALCSRLDIDNSKRTLHGALLDAEILADVYLA 178 Query: 174 MMVGGSQINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 M G + + F +E ++ V + R+ L T T+EEL+ H + ++ + Sbjct: 179 MTGGQTSL---FDESEQDVIQQAVTHHQVKSAVTFSRNLRLLTP-TEEELEAHLEYLKLI 234 Query: 232 GK----NAIWDR 239 K N +WDR Sbjct: 235 NKKSKENCLWDR 246 >gi|261868455|ref|YP_003256377.1| DNA polymerase III subunit epsilon [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413787|gb|ACX83158.1| DNA polymerase III, epsilon subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 253 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/251 (37%), Positives = 150/251 (59%), Gaps = 21/251 (8%) Query: 2 IRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 I+ N R+IV D ETTG++ + IIEIGAVE+++ T F +++ PN R Sbjct: 3 IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 P+A+K+HGITDE L DKP FS + ++F ++ + AE + HNA FDVGF++ E ++N Sbjct: 62 PDAIKVHGITDEMLADKPDFSQVANQFIEYI--KGAELLIHNAPFDVGFMDYEFAKLNL- 118 Query: 117 PL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P+ D + DTL++AR+ +P +N+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 119 PIKTNDICLVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDADILADVYLA 178 Query: 174 MMVGGSQINFGFKTNEDRFFKEE-KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + + F +E + ++ V + + + L T T+EEL H + ++ + Sbjct: 179 MTGGQTSL---FDESEPEIIQHAGEQQVQSTVVFSHNLRLLTP-TEEELQAHLEYLKLIN 234 Query: 233 K----NAIWDR 239 K N +W+R Sbjct: 235 KKSKDNCLWER 245 >gi|170697939|ref|ZP_02889022.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] gi|170137105|gb|EDT05350.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] Length = 244 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 135/240 (56%), Gaps = 17/240 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL+DKP F+ + + DF + AE I HNA FD+GF++AE R++ P + Sbjct: 60 TTEFLRDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237 +D +SL P+ E +LDE DK+++ +W Sbjct: 176 VIDMLDDAGADGSAANGQRVSLASLVLPVLAASDDELAAHQTQLDELDKSVK---GTCVW 232 >gi|264678862|ref|YP_003278769.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2] gi|299532427|ref|ZP_07045819.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44] gi|262209375|gb|ACY33473.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2] gi|298719665|gb|EFI60630.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44] Length = 243 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 133/232 (57%), Gaps = 11/232 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL + DR+IE+G VEL++ T ++ GR + P+AL++HGIT Sbjct: 3 RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFNA-GRDSHPDALRVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 EFLKDKP F E W++ Q AE I HNA FD+GF+N EL+ + PL ++ Sbjct: 62 TEFLKDKPRFEEKIDEIWEYL--QGAELIIHNAPFDLGFLNNELKLAKRPPLKQCVGGVL 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +A+ +P RN L+SLC R G+ S+R+ HGALLD+ LL+DVYI + G + Sbjct: 120 DTLVMAKEMYPGKRNSLDSLCDRLGVDNSNRTLHGALLDAELLADVYINLTRGQDAL--- 176 Query: 185 FKTNEDRFFKEEKK-TVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 T E VP++ L P+ R ++E HD ++ + K++ Sbjct: 177 LMTEEPADAPAAGAIVVPSVDLSSFKLPVL-RANEQEQQSHDDVLKQMDKSS 227 >gi|301021445|ref|ZP_07185469.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1] gi|300398081|gb|EFJ81619.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1] Length = 246 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++ARR P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G Sbjct: 127 FCKVTDSLAVARRMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILADVYLAMT--GG 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 185 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|293390398|ref|ZP_06634732.1| DNA polymerase III, epsilon subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950932|gb|EFE01051.1| DNA polymerase III, epsilon subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 253 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 149/251 (59%), Gaps = 21/251 (8%) Query: 2 IRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 I+ N R+IV D ETTG++ + IIEIGAVE+++ T F +++ PN R Sbjct: 3 IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 P+A+K+HGITDE L DKP FS +EF ++ + AE + HNA FDVGF++ E ++N Sbjct: 62 PDAIKVHGITDEMLADKPDFSQAANEFIEYI--KGAELLIHNAPFDVGFMDYEFAKLNL- 118 Query: 117 PL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P+ D + DTL++AR+ +P +N+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 119 PIKTNDICLVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLA 178 Query: 174 MMVGGSQINFGFKTNEDRFFKEE-KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + + F +E + ++ V + + + L T T+EEL H + ++ + Sbjct: 179 MTGGQTSL---FDESEPEIIQHAGEQQVQSAVVFSHNLRLLTP-TEEELQAHLEYLKLIN 234 Query: 233 K----NAIWDR 239 K N +W+R Sbjct: 235 KKSRDNCLWER 245 >gi|78065897|ref|YP_368666.1| DNA polymerase III subunit epsilon [Burkholderia sp. 383] gi|77966642|gb|ABB08022.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383] Length = 244 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 137/240 (57%), Gaps = 17/240 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F+ + ++ DF Q+AE I HNA FD+GF++AE R++ P + Sbjct: 60 TTEFLSDKPKFAEVANQIRDFV--QDAELIIHNAPFDLGFLDAEFARLDLPPFTKHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237 +D +SL D P+ E +LDE DK+++ +W Sbjct: 176 VIDMLDDAGADGGAGNGQRVSLAALDLPVVAASDDELAAHQAQLDELDKSVK---GTCVW 232 >gi|90407281|ref|ZP_01215467.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3] gi|90311564|gb|EAS39663.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3] Length = 236 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 83/184 (45%), Positives = 121/184 (65%), Gaps = 11/184 (5%) Query: 8 RKIVFDIETTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ RIIEIG VE+++ T R + V+L P+ R+ PEA+ + Sbjct: 8 RQVVLDTETTGMNKDGTIYLGHRIIEIGCVEVINRRLTGRHYHVYLQPD-REVDPEAVTV 66 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLDP 120 HGITDEFL+DKP F+ I +F DF + A+ + HNA FDVGF++ E + +NK P + Sbjct: 67 HGITDEFLQDKPHFADIADDFIDFI--RGADLVIHNAPFDVGFMDQEFRFLNKKTQPTEE 124 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + + DTL +A++ P RN+L+ LC RYGI HR+ HGALLD+ +L+DVY+ M G S Sbjct: 125 IATVTDTLVMAKKMFPGKRNNLDILCDRYGINTKHRTLHGALLDAEILADVYLLMSGGQS 184 Query: 180 QINF 183 ++N Sbjct: 185 KLNL 188 >gi|148979853|ref|ZP_01815731.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] gi|145961545|gb|EDK26846.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] Length = 255 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 83/187 (44%), Positives = 120/187 (64%), Gaps = 16/187 (8%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++++ RI+EIGAVE+++ T R F V++ P+ R EA+ Sbjct: 22 RIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYIKPD-RAIQEEAIG 80 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 +HGITDEFL DKP + I EF DF + AE +AHNA FD GF++ E +++ DP Sbjct: 81 VHGITDEFLVDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKL--DPTIGK 136 Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 D ++ DTL +A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 137 TDDYCKVTDTLDMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTG 196 Query: 177 GGSQINF 183 G + + F Sbjct: 197 GQTSLQF 203 >gi|309750446|gb|ADO80430.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2866] Length = 256 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/260 (38%), Positives = 146/260 (56%), Gaps = 29/260 (11%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINF---------GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 G F + +++ +E K V LK +P T +EL H + + Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKAAEEIKSAVDFSHNLKLLQP-----TNDELQAHLELL 233 Query: 229 QTL----GKNAIWDRYISSN 244 + L G N +WD+ +N Sbjct: 234 KMLNKKSGNNCLWDKRFGNN 253 >gi|261253702|ref|ZP_05946275.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] gi|260937093|gb|EEX93082.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] Length = 223 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 131/220 (59%), Gaps = 17/220 (7%) Query: 25 RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84 RIIEIGAVE+++ T R F V++ P+ R EA+++HGITDEFL DKP + + +EF Sbjct: 13 RIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQSEAVEVHGITDEFLVDKPEYQDVHAEFL 71 Query: 85 DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPSRIIDTLSIARRKHPSSRN 139 DF + AE +AHNA FD GF++ E + DP D ++ DTL++A++ P RN Sbjct: 72 DFI--KGAELVAHNAPFDTGFMDYEFGML--DPTIGKTDDYCKVTDTLAMAKKIFPGKRN 127 Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199 +L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G + + F ++ D + K+ Sbjct: 128 NLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLQFNAGSSNDDGGEAIKRA 187 Query: 200 VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--IW 237 LK R T +E+D H+K + + KN +W Sbjct: 188 ASGRKALK-----VLRATADEIDAHNKRLDIVEKNGSCLW 222 >gi|332528386|ref|ZP_08404380.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC 19624] gi|332042149|gb|EGI78481.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC 19624] Length = 252 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 133/238 (55%), Gaps = 15/238 (6%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL ++ DRIIE+G VELL+ + + P GR + +AL++HGI Sbjct: 1 MRQIVLDTETTGLSAEGGDRIIELGCVELLNRKLSGNNLHFYFNP-GRDSHEDALRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 ++EFL+DKP F+ + E + Q AE I HNA FDVGF+N EL+ I K L I Sbjct: 60 SNEFLRDKPKFAEVAQEILAYL--QGAELIIHNAAFDVGFLNKELELIGKPALHTFVGGI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL++A+ +P RN L++LC R G+ S R+ HGALLD+ LL+DVYI M G + Sbjct: 118 TDTLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINMTRGQDAL-- 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI----QTLGKNAIW 237 + ++ I L + D P+ +++EL H + + G +W Sbjct: 176 --LIDAGDAVEQAGAGFERIDLSRFDLPVL-HASEQELAAHGDVLAQIDKACGGKTVW 230 >gi|221134302|ref|ZP_03560607.1| DNA polymerase III, epsilon subunit [Glaciecola sp. HTCC2999] Length = 240 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 127/230 (55%), Gaps = 19/230 (8%) Query: 7 MRKIVFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MR+IV D ETTG+ + RIIEIG VEL+D T + V++ P + PEA Sbjct: 1 MRQIVLDTETTGMSRESGEHFTHGHRIIEIGCVELVDRKLTGNHYHVYINPQ-QDIDPEA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + +HGIT+EFL+DKP F I F DF + AE + HNA FDVGF++ E L Sbjct: 60 IAVHGITNEFLEDKPLFKEIAQGFIDFID--GAELVIHNAPFDVGFMDLEFALNPATALT 117 Query: 120 PSR----IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++DTL +A++ P RN+L++LC+ YGI SHR HGALLD+ +L+DVY+ M Sbjct: 118 RTEKFCTVLDTLVLAKKMRPGQRNNLDALCREYGIDNSHRDLHGALLDAEILADVYLLMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 G ++ T F +K P S LK T +EL EH+ Sbjct: 178 GGQETLSLETGTKSSSGFDNVEKLAPRTSALK-----IIHATADELTEHE 222 >gi|148825595|ref|YP_001290348.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE] gi|229847255|ref|ZP_04467358.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1] gi|148715755|gb|ABQ97965.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE] gi|229809798|gb|EEP45521.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1] Length = 256 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/260 (38%), Positives = 147/260 (56%), Gaps = 29/260 (11%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKDLAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 G F + +++ +E K V LK +P T +EL H + + Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLELL 233 Query: 229 QTL----GKNAIWDRYISSN 244 + L G N +WD+ +N Sbjct: 234 KMLNKKSGNNCLWDKRFGNN 253 >gi|145637904|ref|ZP_01793548.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH] gi|145268904|gb|EDK08863.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH] Length = 256 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/260 (38%), Positives = 146/260 (56%), Gaps = 29/260 (11%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINF---------GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 G F + +++ +E K V LK +P T +EL H + + Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLELL 233 Query: 229 QTL----GKNAIWDRYISSN 244 + L G N +WD+ +N Sbjct: 234 KMLNKKSGNNCLWDKRFGNN 253 >gi|167648966|ref|YP_001686629.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31] gi|167351396|gb|ABZ74131.1| DNA polymerase III, epsilon subunit [Caulobacter sp. K31] Length = 238 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/235 (38%), Positives = 135/235 (57%), Gaps = 9/235 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTG D K DR++EIG +E++D+ T R+F + C R EA K+HG++ Sbjct: 3 REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEY-CDPLRDMPAEAQKVHGLS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 EFL KP F I F +F + IAHNA FD F+N EL++ N+ PL SR +DT Sbjct: 62 IEFLTGKPKFHEIADAFLEFVGDSPV--IAHNAAFDRSFVNFELEKCNRGPLPESRWVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LCKR+ I++ R KHGAL+D+HLL++VY+++ GG + Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLDSRDKHGALIDAHLLAEVYLELQ-GGKERALELT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-AIWDRY 240 S R +PL R T+EE H +Q K+ A+W ++ Sbjct: 179 QVVA---VNAVSAARAGSYGARPRPLPPRSTEEERQLHAAFVQKNFKDKAVWIQF 230 >gi|239815139|ref|YP_002944049.1| DNA polymerase III, subunit epsilon [Variovorax paradoxus S110] gi|239801716|gb|ACS18783.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus S110] Length = 235 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/231 (38%), Positives = 138/231 (59%), Gaps = 11/231 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++N DRIIE+G VEL T ++ P R++ +ALK+HG+T Sbjct: 3 RQIVLDTETTGLSAENGDRIIELGCVELFARKLTGNDLHIYFNPE-RESHEDALKVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 +FL+DKP F+++ ++ ++ + AE I HNA FDVGF+N EL+ PL + Sbjct: 62 TDFLRDKPKFATLANDIVEYL--RGAELIIHNAAFDVGFLNKELELAGLPPLRSFVGEVT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++A++ +P RN L++LC R+G+ S+R+ HGA LD+ LL+DVYI + G + Sbjct: 120 DTLAMAKQVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLID 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 +NE + TV I L + D P+ ++EL H+ + L K++ Sbjct: 180 VASNE----PAQGTTVVAIDLSQFDLPVIM-AAEQELAAHEAVLSQLDKSS 225 >gi|92114064|ref|YP_573992.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens DSM 3043] gi|91797154|gb|ABE59293.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens DSM 3043] Length = 253 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/255 (37%), Positives = 145/255 (56%), Gaps = 21/255 (8%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D K+ R+IEIGAVE+++ T + ++ P R PEA+++HGI Sbjct: 1 MRQIVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPE-RDIDPEAVEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-------DPL 118 T+E + D+P F+ I FW++ + AE + HNA FDVGFI+ E ++ P+ Sbjct: 60 TNERVADEPVFADIADAFWEYI--RGAELVIHNAAFDVGFIDHEFGLLHDKRGGPRLGPV 117 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D ++DTL++AR+ HP RN+L++LCKRYGI R HGALLD+ +LSDVY+ M Sbjct: 118 ADYCSVLDTLAMARKLHPGQRNNLDALCKRYGIDNGRRVLHGALLDAEILSDVYLTMT-- 175 Query: 178 GSQINFGFKTNEDRFFKE--EKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTLGK 233 G Q E+R E + +V I + R+ TR ++ E H + ++ + Sbjct: 176 GGQTALSLAGIEERAGDEGQDANSVSGIRRVSREGLSLAVTRPSEAEEAAHRAKLDSIRQ 235 Query: 234 NAI---WDRYISSNQ 245 A WD ++Q Sbjct: 236 AAGQCHWDALNDASQ 250 >gi|260775260|ref|ZP_05884157.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260608441|gb|EEX34606.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 246 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 22/246 (8%) Query: 5 NKMRKIVFDIETTGLDS------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 N R +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ P+ Sbjct: 8 NHNRIVVLDTETTGMNREGGPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPD 66 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A+++HGITDEFL DKP + + EF +F + AE +AHNA FD GF++ E + DP Sbjct: 67 AVEVHGITDEFLVDKPEYQDVHKEFLEFI--KGAELVAHNAPFDTGFMDYEFNML--DPG 122 Query: 119 -----DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 123 IGKTDDYCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLL 182 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G + + F + E K R R T +EL+ H + + K Sbjct: 183 MTGGQTSLQFNSGNADGNVGGESIKRAAG----GRKSLKVIRATADELEAHQNRLDLVEK 238 Query: 234 NA--IW 237 + +W Sbjct: 239 SGSCLW 244 >gi|57239226|ref|YP_180362.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Welgevonden] gi|57161305|emb|CAH58228.1| DNA polymerase III, epsilon subunit [Ehrlichia ruminantium str. Welgevonden] Length = 242 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 141/239 (58%), Gaps = 9/239 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M N +R+IV D ETTGLD+ DRIIE+G +EL+D T + F ++ P R A Sbjct: 1 MSYYNGIREIVLDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGIT + LKDKP FS I +F DF N+ + HNA FD+ FI EL +I K Sbjct: 60 TKIHGITVDMLKDKPKFSEIADKFLDFIG--NSVLVIHNAVFDIKFIKMELDKIQKSYNS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +++DTL +AR+K P + L++LCKR+ I++ R HGALLD+ LL VY+++M GG Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 Q + F+ N F + + S + +P ++++EE+ +H ++ + KN IW+ Sbjct: 177 QRSLNFQDNSSMFQSSDYSHDVSRSYI---EPRLYKVSEEEIVKHKMLLEKI-KNPIWN 231 >gi|332525346|ref|ZP_08401511.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] gi|332108620|gb|EGJ09844.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] Length = 234 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 82/174 (47%), Positives = 119/174 (68%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL + + DR++E+G +E+L+ + RT +L P R ++PEA+K+HG+ Sbjct: 1 MRQIFLDTETTGLSAVDGDRLVEVGCIEMLNRRLSGRTLHHYLNPE-RSSNPEAVKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 TDEFL DKP F+++ EF +F ++AE I HNA FDVGF++AEL R+ K L I Sbjct: 60 TDEFLADKPLFAAVADEFIEFV--RDAELIIHNAAFDVGFLDAELTRLGKPRLVELGCTI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D+L +AR+ P N L++LCKR + S+R+ HGALLD+ LL++VYI+M G Sbjct: 118 TDSLVMARQLFPGKANSLDALCKRLEVDNSNRALHGALLDAGLLAEVYIRMTRG 171 >gi|260581298|ref|ZP_05849115.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW] gi|260092047|gb|EEW75993.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW] Length = 256 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 98/260 (37%), Positives = 147/260 (56%), Gaps = 29/260 (11%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 G F + +++ +E K V LK +P T +EL H + + Sbjct: 179 GQTNLFDEEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLEFL 233 Query: 229 QTL----GKNAIWDRYISSN 244 + + G N +WD+ +N Sbjct: 234 KMMNKKSGNNCLWDKRFGNN 253 >gi|325527245|gb|EGD04625.1| DNA polymerase III subunit epsilon [Burkholderia sp. TJI49] Length = 243 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 134/240 (55%), Gaps = 17/240 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ + + DF + AE I HNA FD+GF++AE R+ P + Sbjct: 60 TTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237 +D +SL D P+ E +LDE DK+++ +W Sbjct: 176 VIDMLDDEAADGGAGGGQRVSLASLDLPVLAASDDELAAHQTQLDELDKSVK---GTCVW 232 >gi|295677150|ref|YP_003605674.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] gi|295436993|gb|ADG16163.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] Length = 244 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 79/174 (45%), Positives = 114/174 (65%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARGGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ I +F DF Q A+ I HNA FD+GF++AE + P+ I Sbjct: 60 TTEFLSDKPKFAEIIDQFRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Sbjct: 118 IDTLAQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171 >gi|145633563|ref|ZP_01789291.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655] gi|144985769|gb|EDJ92383.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655] Length = 256 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 99/260 (38%), Positives = 146/260 (56%), Gaps = 29/260 (11%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKDLAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 G F + +++ +E K V LK +P T +EL H + + Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLELL 233 Query: 229 QTL----GKNAIWDRYISSN 244 + L G N +WD+ +N Sbjct: 234 KMLNKKSGNNCLWDKRFGNN 253 >gi|226945027|ref|YP_002800100.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ] gi|226719954|gb|ACO79125.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ] Length = 244 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 137/234 (58%), Gaps = 10/234 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ ++ RIIEIG VEL T R F V+L P+ R A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTEGHRIIEIGCVELQGRRLTGRHFHVYLQPD-RTVDEGAVAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121 TD+FL DKP F+ I EF++F + A+ I HNA FD+GFI E R+ + D Sbjct: 60 TDDFLADKPRFADIAEEFFEFI--KGAQLIIHNAAFDIGFIEDEFSRLGQTERADVNAHC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR +HP RN L++LCKRY + S+R HGALLD+ +L+DV++ M G + + Sbjct: 118 TVLDTLLMARERHPGQRNSLDALCKRYDVDNSNRDLHGALLDAEILADVWLAMTGGQTHL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + + +E+ + + + +S +R + R ++EL H + + + K A Sbjct: 178 SLSGEGSEN-GGRAQASAIRRLS-PERQRTRVIRAGEQELAAHAERLAAIEKAA 229 >gi|84501202|ref|ZP_00999407.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola batsensis HTCC2597] gi|84390493|gb|EAQ02981.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola batsensis HTCC2597] Length = 230 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 96/235 (40%), Positives = 142/235 (60%), Gaps = 8/235 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL ++ T T+ V++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPEQGDRIVEIGAVELWNHVPTGETYHVYINPE-RSMPQEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F + F +F ++A+ + HNA FD+ FINAEL +N + + ID Sbjct: 60 GDDFLRDKPVFRDVARGFVEFV--KDAKLVIHNASFDMKFINAELGWLNIPAIPWDQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++ P S L++LC+R+GI S R+ HGALLDS +L++VY++ ++GG Q +F Sbjct: 118 TLAIARQRFPGSPASLDALCRRFGIDNSARTLHGALLDSEILAEVYLE-LIGGRQPDFAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + + + R PL RIT EE H + ++ LG A+W Y Sbjct: 177 SASTG---TQTGTDTADWRPKPRPTPLPPRITAEEAAAHAEFVERLGDGALWKSY 228 >gi|186475632|ref|YP_001857102.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815] gi|184192091|gb|ACC70056.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815] Length = 249 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 18/240 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRIIEIGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ I DF Q+AE I HNA FD+GF++AE + P + Sbjct: 60 TTEFLSDKPKFAEIADTLRDFI--QDAELIIHNAPFDIGFLDAEFALLGLPPFSQYCGEV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--I 181 IDTL A+ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G I Sbjct: 118 IDTLVRAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 + +T D ++ + + L + T +EL EH+ + L K+ ++W Sbjct: 178 DMLGETAADDAGGAKRVMLDTLEL------IVLAATDDELAEHEALLDGLDKSLKGTSVW 231 >gi|291616383|ref|YP_003519125.1| DnaQ [Pantoea ananatis LMG 20103] gi|291151413|gb|ADD75997.1| DnaQ [Pantoea ananatis LMG 20103] Length = 243 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 142/241 (58%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIG VE+++ T F ++L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGGVEVINRRLTGNNFHMYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLD 119 HGI DEFL DKP+FS I EF D+ + AE + HNA FD+GF++ E LQR + Sbjct: 66 HGIADEFLLDKPTFSDIADEFLDYI--RGAELVIHNASFDIGFMDYEFGKLQRGIEKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++ARR P RN L++LC RY I S R+ HGALLD+ +L++V++ M G Sbjct: 124 FCKITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVFLTMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 Q + F + E+R +++ + + I+ + T + EE+++H+ + + G + + Sbjct: 182 QTSLSFSSEEERARQQQSEGIQRIARPSSGLRVVT-ASDEEVNQHESRLDLIMKKGGSCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|167587486|ref|ZP_02379874.1| DNA polymerase III subunit epsilon [Burkholderia ubonensis Bu] Length = 242 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 138/245 (56%), Gaps = 13/245 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ + + DF + AE I HNA FD+GF++AE R++ P + + Sbjct: 60 TTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 +D +SL D P+ + +EL H + L K+ +W R Sbjct: 176 VIDMLDDDAADGGAANGQRVSLASLDLPVLA-ASDDELAAHQAQLDGLDKSVKGTCVWRR 234 Query: 240 YISSN 244 ++ Sbjct: 235 TPAAG 239 >gi|319898105|ref|YP_004136302.1| DNA polymerase iii epsilon subunit [Haemophilus influenzae F3031] gi|317433611|emb|CBY81995.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3031] Length = 256 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 98/260 (37%), Positives = 147/260 (56%), Gaps = 29/260 (11%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINF---------GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 G F + +++ +E K V LK +P T +EL H + + Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQP-----TNDELQAHLEFL 233 Query: 229 QTL----GKNAIWDRYISSN 244 + + G N +WD+ +N Sbjct: 234 KMMNKKSGNNCLWDKRFGNN 253 >gi|327392834|dbj|BAK10256.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis AJ13355] Length = 243 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 142/241 (58%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T F ++L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLD 119 HGI DEFL DKP+FS I EF D+ + AE + HNA FD+GF++ E LQR + Sbjct: 66 HGIADEFLLDKPTFSDIADEFLDYI--RGAELVIHNASFDIGFMDYEFGKLQRGIEKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++ARR P RN L++LC RY I S R+ HGALLD+ +L++V + M G Sbjct: 124 FCKITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVLLTMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 Q + F + E+R +++ + + I+ + T + EE+++H+ + + G + + Sbjct: 182 QTSLSFSSEEERARQQQSEGIQRIARPNSGLRVVT-ASDEEVNQHESRLDLIMKKGGSCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|309972740|gb|ADO95941.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2846] Length = 255 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 99/259 (38%), Positives = 148/259 (57%), Gaps = 28/259 (10%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINFGFKTNEDRFFK-------EEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQ 229 G F ++ E + EE K+ + S LK +P T +EL H + ++ Sbjct: 179 GQTNLFDEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQP-----TNDELQAHLEFLK 233 Query: 230 TL----GKNAIWDRYISSN 244 + G N +W++ +N Sbjct: 234 MMNKKSGNNCLWEKRFGNN 252 >gi|89067418|ref|ZP_01154931.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola granulosus HTCC2516] gi|89046987|gb|EAR53041.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola granulosus HTCC2516] Length = 230 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 121/184 (65%), Gaps = 5/184 (2%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D ++ DRI+EIGAVEL ++ T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPEDGDRIVEIGAVELDNHMPTGRTYHQYINPQ-RAMPREAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL DKP F+ I F DF +A + HNA FD+ F+NAEL N L S+ +D Sbjct: 60 GDEFLADKPVFARIGRAFLDFVG--DARLVIHNASFDMKFLNAELGWANLPRLPDSQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+++AR K P S L++LC+R+GI S R+ HGALLDS +L++VY++ ++GG Q +F Sbjct: 118 TVAMARSKFPGSPVSLDALCRRFGIDNSARTYHGALLDSEILAEVYLE-LIGGRQPDFAL 176 Query: 186 KTNE 189 ++ Sbjct: 177 SVSQ 180 >gi|26990834|ref|NP_746259.1| DNA polymerase III subunit epsilon [Pseudomonas putida KT2440] gi|24985842|gb|AAN69723.1|AE016608_9 DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440] Length = 252 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 96/243 (39%), Positives = 135/243 (55%), Gaps = 14/243 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPL 118 + +HGITD FL KP F + EF+ F Q A + HNA FDVGFIN E + + D Sbjct: 60 INVHGITDAFLVGKPRFGDVAEEFFQFI--QGATLVIHNAAFDVGFINNEFALLGQQDRA 117 Query: 119 DPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D S+ I+DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M Sbjct: 118 DISQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177 Query: 176 VGGSQINF---GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + ++ G T ED + ++ R + EEL+ H + + + Sbjct: 178 GGQTSLSLAGNGADTEED---GQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIA 234 Query: 233 KNA 235 K+A Sbjct: 235 KSA 237 >gi|58617240|ref|YP_196439.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Gardel] gi|58416852|emb|CAI27965.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Gardel] Length = 242 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 141/239 (58%), Gaps = 9/239 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M N +R+IV D ETTGLD+ DRIIE+G +EL+D T + F ++ P R A Sbjct: 1 MSYYNGIREIVLDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGIT + LKDKP FS I +F DF N+ + HNA FD+ FI EL +I K Sbjct: 60 TKIHGITVDMLKDKPKFSEIADKFLDFIG--NSVLVIHNAVFDIKFIKMELDKIQKSYNS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +++DTL +AR+K P + L++LCKR+ I++ R HGALLD+ LL VY+++M GG Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 Q + F+ N F + + S + +P ++++EE+ +H ++ + KN IW+ Sbjct: 177 QRSLNFQDNSGMFQSSDYSHDVSRSYI---EPRLYKVSEEEIVKHRMLLEKI-KNPIWN 231 >gi|171318244|ref|ZP_02907407.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] gi|171096588|gb|EDT41482.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] Length = 244 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 136/240 (56%), Gaps = 17/240 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ + + DF ++AE I HNA FD+GF++AE R++ P + Sbjct: 60 TTEFLSDKPKFAEVVDQIRDFV--KDAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237 +D +SL D P+ E +LDE DK+++ +W Sbjct: 176 VIDMLDDAGADGGAANGQRVSLASLDLPVLAASDDELAAHQTQLDELDKSVK---GTCVW 232 >gi|145639808|ref|ZP_01795410.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII] gi|145271176|gb|EDK11091.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII] Length = 256 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 98/260 (37%), Positives = 146/260 (56%), Gaps = 29/260 (11%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 G F + +++ +E K V LK +P T +EL H + + Sbjct: 179 GQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLELL 233 Query: 229 QTL----GKNAIWDRYISSN 244 + + G N +WD+ +N Sbjct: 234 KMMNKKSGNNCLWDKRFGNN 253 >gi|329114274|ref|ZP_08243036.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001] gi|326696350|gb|EGE48029.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001] Length = 224 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 95/233 (40%), Positives = 131/233 (56%), Gaps = 12/233 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTGLD + DR+IEI A+EL+ T RTF + P R EA ++HG T Sbjct: 3 RSILFDTETTGLDPATGDRVIEIAALELVGDLPTGRTFHKLIDPE-RDVPEEASRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ KP F+ + +F F + IAHNA+FD GF+NAEL+R K L R++DT Sbjct: 62 RADLEGKPKFAEVADDFLAFVGDD--PLIAHNARFDFGFMNAELKRAGKKTLGLDRMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +AR + P N L++LC+R+G+ +S R+ H ALLD LL+DVY+++M GG Q G Sbjct: 120 LDMARERFPGMPNSLDALCRRFGVDLSARTTHNALLDCKLLADVYVELM-GGRQHGLGLM 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 ED P + R +P T +EL H + L K IW+R Sbjct: 179 A-EDGQLPSVMYEGPVNRKVVRVQP-----TPQELAAHAAFVAGL-KEPIWER 224 >gi|329891169|ref|ZP_08269512.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC 11568] gi|328846470|gb|EGF96034.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC 11568] Length = 241 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 89/235 (37%), Positives = 137/235 (58%), Gaps = 10/235 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG D K DR+IE+G +E+ D T RTF F+ P R P+A+K+HGIT Sbjct: 3 REIVLDTETTGFDPKTGDRLIEVGCIEIEDLLPTGRTFHRFINPE-RLIPPDAIKVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +KD P F + + +F +A IAHNA FD FI+ E+ RI + P R IDT Sbjct: 62 DDKVKDAPKFHEVVDDLMEFLG--DAPLIAHNANFDRNFIDFEIGRIGRTPPPQDRWIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LCKRY I++ R+ HGAL+D+ LL++VY+++ GG + Sbjct: 120 LALAQKRFPGMANSLDALCKRYKISLVERTLHGALIDARLLAEVYLELR-GGKERALDLT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-AIWDRY 240 + +T ++ R +PL + +T EE H ++ K+ ++W Y Sbjct: 179 STR----GGAAETAERVAYGARPRPLPSFVTAEEEAAHLAFLKATIKDFSLWAGY 229 >gi|222110838|ref|YP_002553102.1| DNA polymerase iii subunit epsilon [Acidovorax ebreus TPSY] gi|221730282|gb|ACM33102.1| DNA polymerase III, epsilon subunit [Acidovorax ebreus TPSY] Length = 237 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 135/237 (56%), Gaps = 15/237 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIE+G VEL++ T ++L P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 +EFL+DKP F+ + + Q AE I HNA FDVGF++ EL+ + PL +I Sbjct: 62 NEFLRDKPKFAERVQDILQYL--QGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVI 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++A+ P RN L+SLC R G+ S R+ HGALLD+ LL+DVYI M G + Sbjct: 120 DTLAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLDAELLADVYINMTRGQDALLI- 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI----QTLGKNAIW 237 ++ TV + L + + T + +EL EH++ + ++ G IW Sbjct: 179 ---MDEATAGAGGTTVAAVDLSRIALTVLTA-SAQELAEHEEVLVQIDKSSGGKTIW 231 >gi|172060228|ref|YP_001807880.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6] gi|171992745|gb|ACB63664.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] Length = 244 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 113/174 (64%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ + + DF + AE I HNA FD+GF++AE R++ P + Sbjct: 60 TTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171 >gi|315179370|gb|ADT86284.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218] Length = 234 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 137/241 (56%), Gaps = 22/241 (9%) Query: 10 IVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA+++H Sbjct: 1 MVLDTETTGMNLEGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RAIQDEAIEVH 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-----KDPL 118 GITDEFL DKP + + EF DF + AE +AHNA FDVGF++ E +++ D L Sbjct: 60 GITDEFLVDKPEYKDVHEEFLDFI--RGAELVAHNAPFDVGFMDYEFSKLSIPTAKTDEL 117 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 118 --CKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 175 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--I 236 + + F + E+ K V R R T +E+ H + + K+ + Sbjct: 176 TSLQFSGSSQENGMGAGAIKRVAE----GRKALKVLRATADEIQAHQDRLDIVEKSGTCL 231 Query: 237 W 237 W Sbjct: 232 W 232 >gi|268592015|ref|ZP_06126236.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131] gi|291312407|gb|EFE52860.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131] Length = 247 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 148/246 (60%), Gaps = 26/246 (10%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P+ R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI+DEFL+DKP F+ I EF +F + AE + HNA FD+GF++ E +++NK + P++ Sbjct: 66 HGISDEFLQDKPVFAEIADEFLEFI--RGAELVIHNAPFDIGFMDYEFRKLNKG-IPPTQ 122 Query: 123 ----IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G Sbjct: 123 DFCTITDSLVLARKLFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQ 182 Query: 179 SQINFGFKT---NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---- 231 + ++F + N ++ ++ ++ P L + +F + EEL H+ + + Sbjct: 183 TSLSFSMDSESANNEQEYEIQRIERPQTGL----RVIFA--SDEELIAHEARLDIVDKKG 236 Query: 232 GKNAIW 237 GK +W Sbjct: 237 GKPCLW 242 >gi|83313644|ref|YP_423908.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] gi|82948485|dbj|BAE53349.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 257 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 135/234 (57%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D R++EIG VEL ++ T F + P R EA K+HG+ Sbjct: 28 MREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGSVFHRYCNPE-RDMPEEAFKVHGL 86 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F+ I ++F +F + + HNA+FD+ FINAEL R+ PL SR ID Sbjct: 87 SADFLSDKPLFAEIVADFLEFIG--DVPLVIHNAEFDMRFINAELTRLGFPPLPMSRSID 144 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +AR++ P ++ +L++LC+R+ I +HR+KHGALLDS LL++VY++ ++GG Q Sbjct: 145 TVMMARKRFPGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQ-LIGGRQPGLEL 203 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + +P T+EE H + L KNA+W R Sbjct: 204 GGGKGNGAGGTANASTHQVTREFREPRPHGPTEEETAAHTAFVAKL-KNAVWLR 256 >gi|332535809|ref|ZP_08411542.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332034787|gb|EGI71325.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 237 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 142/239 (59%), Gaps = 17/239 (7%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+D K RIIEIG VEL++ T F V++ P R + EA+ +HGIT Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RPSEEEAIDVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS--RI 123 +EFL+DKP F I EF+D+ + AE + HNA FDVG ++ E +N+ P + ++ Sbjct: 63 NEFLRDKPLFHQIAQEFFDYI--EGAELVIHNAPFDVGHMDNEFALLNQGYPKTETFCQV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR HP +N+L++LC+RY + + R+ HGALLDS +L+DVY+ M G +++N Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYLAMTGGQTKLN- 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDK-PLFT-RITKEELDEHDKTIQTL---GKNAIW 237 N+D +++K I L D+ PL R + E H+ + + G IW Sbjct: 180 -LNQNKDDGSEQQKG---GIKRLNSDRAPLVVLRASDTEQSAHEARLDLVNKEGGQCIW 234 >gi|167836205|ref|ZP_02463088.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis MSMB43] Length = 241 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 138/246 (56%), Gaps = 13/246 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIE+G VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGSNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F+ I + DF ++AE I HNA FD+GF++AE + + + Sbjct: 60 TTEFLSDKPKFAEIVDQLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 ++ P ++ D P+ T EEL H+ + L K + +W + Sbjct: 176 VIDMLDEAGDAHRNSNEPRMAFSGLDLPVLA-ATGEELAAHEAQLDALDKSVKGSCVWRK 234 Query: 240 YISSNQ 245 ++ + Sbjct: 235 EAAAGE 240 >gi|115351214|ref|YP_773053.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD] gi|115281202|gb|ABI86719.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] Length = 244 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 114/174 (65%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ + + DF ++AE I HNA FD+GF++AE R++ P + Sbjct: 60 TTEFLSDKPKFAEVVDQIRDFV--KDAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171 >gi|254252714|ref|ZP_04946032.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158] gi|124895323|gb|EAY69203.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158] Length = 244 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 135/240 (56%), Gaps = 17/240 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ + + +F + AE I HNA FD+GF++AE + P + + Sbjct: 60 TTEFLSDKPKFAEVADQIREFV--RGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE------ELDEHDKTIQTLGKNAIW 237 +D +SL D P+ +E +LDE DK+++ +W Sbjct: 176 VIDMLDDAATVGGAANGQRVSLAALDLPVLAASDEELAAHHAQLDELDKSVK---GTCVW 232 >gi|300724515|ref|YP_003713838.1| DNA polymerase III subunit epsilon [Xenorhabdus nematophila ATCC 19061] gi|297631055|emb|CBJ91741.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Xenorhabdus nematophila ATCC 19061] Length = 249 Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 95/244 (38%), Positives = 143/244 (58%), Gaps = 23/244 (9%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F +++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHIYIKPE-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119 HGI+DEFL+DKP F+ I EF +F + AE I HNA FD+GF++ E ++N+D D Sbjct: 66 HGISDEFLQDKPLFADIADEFIEFI--RGAELIIHNATFDIGFMDYEFSKLNRDIPPTAD 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCTITDSLMLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183 Query: 180 QINF---GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GK 233 + F G ++ + K T P + L K ++ + EEL +H+ + + G Sbjct: 184 SLAFSMEGEVSSHALVSEIHKITRPQVGL----KVIYA--SDEELTQHESRLDLVEKKGG 237 Query: 234 NAIW 237 + +W Sbjct: 238 SCLW 241 >gi|315126186|ref|YP_004068189.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913] gi|315014700|gb|ADT68038.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913] Length = 237 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 137/239 (57%), Gaps = 17/239 (7%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+D K RIIEIG VEL++ T F V++ P R EA+ +HGIT Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELMNRRLTGNNFHVYINPQ-RSIEEEAIDVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSRI 123 +EFL+DKP F I EF+D+ ++AE + HNA FD+G ++ E +N+ + D + Sbjct: 63 NEFLRDKPLFRDIAQEFFDYI--KDAELVIHNAPFDIGHMDNEFALLNQGYQNTHDFCGV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR HP +N+L++LC+RY + + R+ HGALLDS +L+DVY+ M G Q+ Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNTKRTLHGALLDSEILADVYLAMT--GGQVKL 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT-----IQTLGKNAIW 237 N+D +++K I L D+ + E ++ +Q G + +W Sbjct: 179 NLNQNKDDSSEDQKG---GIRRLNSDRAPLVVVAASEAEQSAHQSRLDIVQKEGGHCLW 234 >gi|188534758|ref|YP_001908555.1| DNA polymerase III subunit epsilon [Erwinia tasmaniensis Et1/99] gi|188029800|emb|CAO97680.1| DNA polymerase III epsilon subunit [Erwinia tasmaniensis Et1/99] Length = 249 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 141/245 (57%), Gaps = 19/245 (7%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R PEA Sbjct: 5 NTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEA 63 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGI DEFL DKP+F+ I +F + N AE + HNA FD+GF++ E ++ + Sbjct: 64 FGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQRGIAK 121 Query: 120 P---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +I D+L++ARR P RN L++LC RY I S R+ HGALLDS +L++V++ M Sbjct: 122 TDTFCKITDSLAMARRLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFLTMT- 180 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTL---G 232 G Q + F +R +++ +TV I+ + L R ++EEL H+ + + G Sbjct: 181 -GGQTSLAFSMEGERGKQQDGETVHRIA--RPSSGLRVVRASEEELFAHEARLDLVEKKG 237 Query: 233 KNAIW 237 + +W Sbjct: 238 GSCLW 242 >gi|145631632|ref|ZP_01787397.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] gi|144982766|gb|EDJ90295.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] Length = 256 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 98/265 (36%), Positives = 147/265 (55%), Gaps = 39/265 (14%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RSVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDP 117 +K+HGITDE L DKP F I +F D+ N AE + HNA FDVGF++ E +++ N Sbjct: 62 IKVHGITDEMLADKPEFKEIAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLDLNVKT 119 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL--------------FTRITKEELDE 223 G +TN F EE+ ++ + ++K + T +EL Sbjct: 179 G-------QTN---LFDEEESVESDVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQA 228 Query: 224 HDKTIQTL----GKNAIWDRYISSN 244 H + ++ + G N +WD+ +N Sbjct: 229 HLEFLKMMNKKSGNNCLWDKRFGNN 253 >gi|53805082|ref|YP_113230.1| DNA polymerase III subunit epsilon [Methylococcus capsulatus str. Bath] gi|53758843|gb|AAU93134.1| DNA polymerase III, epsilon subunit [Methylococcus capsulatus str. Bath] Length = 267 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 101/272 (37%), Positives = 138/272 (50%), Gaps = 44/272 (16%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD K RIIEIG VELLD T F V++ P R+ A+++HG+ Sbjct: 1 MRQIVLDTETTGLDPKAGHRIIEIGCVELLDRRITQNRFHVYINPE-REIDAGAIEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 T+EFL P F +I +F +F + AE I HNA FDVGF++ EL + ++ D Sbjct: 60 TNEFLAGMPVFRNIADDFLNFIS--GAELIIHNAAFDVGFLDHELSLLGENRGRIADYCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I DTL++AR+ HP RN L++LCKRY + S R HGALLD+ +L+DVY+ M G QI Sbjct: 118 ICDTLAMARKNHPGQRNSLDALCKRYNVDNSRRELHGALLDAEILADVYLAMT--GGQIT 175 Query: 183 F--------GFKTNEDRFFK-----------------------EEKKTVPNISLLKRDKP 211 G D F+ E ++ P R + Sbjct: 176 MLLEADAESGGARGSDGGFERFVVNPSAGSVHAQPGPLGANSVEREQAAPRSVDTARPRL 235 Query: 212 LFTRITKEELDEHDKTIQTLGK----NAIWDR 239 R T EE + H ++ + K N +W R Sbjct: 236 RVIRSTPEEAEAHAARLEAIAKASSGNCLWSR 267 >gi|221066578|ref|ZP_03542683.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1] gi|220711601|gb|EED66969.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1] Length = 243 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 82/173 (47%), Positives = 111/173 (64%), Gaps = 6/173 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL + DR+IE+G VEL++ T ++ GR + P+AL++HGIT Sbjct: 3 RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFNA-GRDSHPDALRVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 EFLKDKP F E W++ Q AE I HNA FD+GF+N EL+ + PL +I Sbjct: 62 TEFLKDKPRFEEKIDEIWEYL--QGAELIIHNAPFDLGFLNNELKLAKRPPLKQCVGGVI 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 DTL +A+ +P RN L+SLC R G+ S+R+ HGALLD+ LL+DVYI + G Sbjct: 120 DTLVMAKEMYPGKRNSLDSLCDRLGVDNSNRTLHGALLDAELLADVYINLTRG 172 >gi|145635316|ref|ZP_01791019.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA] gi|145267460|gb|EDK07461.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA] Length = 255 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 99/259 (38%), Positives = 148/259 (57%), Gaps = 28/259 (10%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKDLAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINFGFKTNEDRFFK-------EEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQ 229 G F ++ E + EE K+ + S LK +P T +EL H + ++ Sbjct: 179 GQTNLFDEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQP-----TNDELQAHLEFLK 233 Query: 230 TL----GKNAIWDRYISSN 244 + G N +W++ +N Sbjct: 234 MMNKKSGNNCLWEKRFGNN 252 >gi|307730502|ref|YP_003907726.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003] gi|307585037|gb|ADN58435.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003] Length = 244 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 79/174 (45%), Positives = 114/174 (65%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ I +F DF Q A+ I HNA FD+GF++AE + P+ I Sbjct: 60 TTEFLSDKPKFAEIADQFRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171 >gi|119944269|ref|YP_941949.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] gi|119862873|gb|ABM02350.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] Length = 239 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 142/242 (58%), Gaps = 22/242 (9%) Query: 7 MRKIVFDIETTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R++V D ETTG++ RIIEIG VE+++ T R F V++ P+ R+ PEA+ Sbjct: 7 IRQVVLDTETTGMNKGGTIYVGHRIIEIGCVEVINRRLTGRHFHVYVKPD-REIDPEAIA 65 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITDEFL DKP+FS I EF +F + AE + HNA FDVGF++ E + +NK Sbjct: 66 VHGITDEFLHDKPAFSDIADEFIEFI--KGAELVIHNAPFDVGFMDQEFRFLNKRTKPTA 123 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + S I DTL +AR+ +P R L++LC+ GI HR HGALLD+ +L+DVY+ M G Sbjct: 124 EISTITDTLVMARKMYPGKRASLDALCRELGIDNKHRVLHGALLDAEILADVYLLMTGGQ 183 Query: 179 SQINFGFK-TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA-- 235 ++N N+ K +KT ++++ +++E H+K + + K+A Sbjct: 184 KKLNLSSSGQNDTNTGKRVRKTQSPLTIIS--------ASEDEQQAHEKRLDLIEKSASC 235 Query: 236 IW 237 +W Sbjct: 236 LW 237 >gi|121594487|ref|YP_986383.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42] gi|120606567|gb|ABM42307.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42] Length = 237 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 136/237 (57%), Gaps = 15/237 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIE+G VEL++ T ++L P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 +EFL+DKP F+ + + Q AE I HNA FDVGF++ EL+ + PL +I Sbjct: 62 NEFLRDKPKFAERVQDILQYL--QGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVI 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++A+ P RN L+SLC R G+ S R+ HGALLD+ LL+DVYI M G + Sbjct: 120 DTLAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLDAELLADVYINMTRGQDALLI- 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237 ++ TV + L + + T + +EL EH++ + + K++ IW Sbjct: 179 ---MDEATAGAGGTTVAAVDLSRIALTVLTA-SAQELAEHEEVLVQIDKSSSGKTIW 231 >gi|171057726|ref|YP_001790075.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6] gi|170775171|gb|ACB33310.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6] Length = 241 Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 116/174 (66%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL ++ DR++E+G VE+++ T R + P R N EA+++HG+ Sbjct: 1 MRQIFLDTETTGLSHESGDRVVELGCVEMVNRRLTGRNLHHYFNPQ-RANHEEAVRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 TD FL DKP FS++ EF DF ++AE IAHNA FDVGF++AEL+RI PL ++ Sbjct: 60 TDAFLADKPLFSAVAQEFVDFV--RDAEIIAHNANFDVGFLDAELKRIGHPPLKQLVDKV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D+L +AR + P N L++LC+R + + R+ HGALLD+ LL++VYI+M G Sbjct: 118 TDSLVMAREQFPGKANSLDALCRRLEVDNTSRTVHGALLDAGLLAEVYIRMTRG 171 >gi|146282599|ref|YP_001172752.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri A1501] gi|145570804|gb|ABP79910.1| DNA polymerase III, epsilon chain [Pseudomonas stutzeri A1501] gi|327480856|gb|AEA84166.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 4166] Length = 241 Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 92/225 (40%), Positives = 130/225 (57%), Gaps = 13/225 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ + RIIEIG VE++ T R + V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121 T+EFL DKP F I EF++F ++A+ + HNA FD+GFIN E Q+ + D Sbjct: 60 TNEFLVDKPRFRDIADEFFEFI--KDAQLVIHNAAFDLGFINNEFALLGQQDRAEITDHC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR +HP RN L++LCKRYG+ S R HGALLD+ +L+DV++ M G Q Sbjct: 118 TVLDTLLMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMT--GGQT 175 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEH 224 N + + + P I L D+P R + EEL H Sbjct: 176 NLSLAGDGESSDGGRPQPSP-IRRLPADRPRTAVLRASDEELAAH 219 >gi|107022359|ref|YP_620686.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia AU 1054] gi|116689306|ref|YP_834929.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia HI2424] gi|105892548|gb|ABF75713.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116647395|gb|ABK08036.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] Length = 244 Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 113/174 (64%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ + + DF ++AE I HNA FD+GF++AE R+ P + Sbjct: 60 TTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171 >gi|237730199|ref|ZP_04560680.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2] gi|226905738|gb|EEH91656.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2] Length = 245 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 138/241 (57%), Gaps = 18/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++ +D + Sbjct: 69 HGIADEFLLDKPTFADVADEFLDYI--RGAELVIHNASFDIGFMDYEFAKLKRDIPKTNE 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ MM GG Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYL-MMTGG- 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q F D +++ T + + K T EEL H+ +Q G + + Sbjct: 185 QTTMAFSMEGDS--QQQNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQKKGGSCL 242 Query: 237 W 237 W Sbjct: 243 W 243 >gi|145641463|ref|ZP_01797041.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] gi|145273754|gb|EDK13622.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.4-21] Length = 205 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 121/191 (63%), Gaps = 12/191 (6%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINFGFKTN 188 G QI + K N Sbjct: 179 GKQI-YSMKKN 188 >gi|187924850|ref|YP_001896492.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN] gi|187716044|gb|ACD17268.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans PsJN] Length = 244 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 116/174 (66%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VE+++ T ++ P R++ P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVEMVNRRLTGNNLHFYINPE-RESDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ I +F DF Q+A+ I HNA FD+GF++AE + P+ I Sbjct: 60 TTEFLSDKPKFAEIADQFRDFI--QDADLIIHNAPFDIGFLDAEFALLGLPPVKTYCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171 >gi|170732605|ref|YP_001764552.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3] gi|169815847|gb|ACA90430.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia MC0-3] Length = 244 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 113/174 (64%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ + + DF ++AE I HNA FD+GF++AE R+ P + Sbjct: 60 TTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171 >gi|283783999|ref|YP_003363864.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168] gi|282947453|emb|CBG87000.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168] Length = 243 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 142/241 (58%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F ++L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHIYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++N+D P S Sbjct: 66 HGIADEFLLDKPTFADVADEFLDYI--RGAELVIHNASFDIGFMDYEFSKLNRDIPKTSS 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + + ++ ++T+ + R K + EE+ H+ + + G + + Sbjct: 184 SMTFAMEGETQQ--QQGEETIQRLVRQAR-KLRVVFASDEEVAAHEARLDLVEKKGGSCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|253988342|ref|YP_003039698.1| DNA polymerase III subunit epsilon [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779792|emb|CAQ82953.1| putative DNA polymerase III epsilon chain [Photorhabdus asymbiotica] Length = 248 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 92/244 (37%), Positives = 144/244 (59%), Gaps = 23/244 (9%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ + +IIEIGAVE+++ T R F +++ P+ R PEA ++ Sbjct: 7 RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHIYVKPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119 HGI+DEFL+DKP F+ I EF +F + AE I HNA FD+GF++ E ++N+D D Sbjct: 66 HGISDEFLQDKPLFADIADEFIEFI--RGAELIIHNAPFDIGFMDYEFGKLNRDIPPTTD 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L +AR P RN+L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKVTDSLQLARALFPGKRNNLDALCDRYDIDNSQRTLHGALLDAEILADVYLIMTGGQT 183 Query: 180 QINF---GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GK 233 + F G + + ++ T P +L K ++ T EEL H+ + + G Sbjct: 184 ALAFSMEGEVSGSANVSEVQRITRPQTAL----KVIYA--TGEELAAHESRLDLVEKKGG 237 Query: 234 NAIW 237 + +W Sbjct: 238 SCLW 241 >gi|77360888|ref|YP_340463.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis TAC125] gi|76875799|emb|CAI87020.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudoalteromonas haloplanktis TAC125] Length = 237 Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 141/237 (59%), Gaps = 13/237 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+D K RIIEIG VEL++ T F V++ P R + EA+ +HGIT Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RNSEEEAIDVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS--RI 123 +EFL+DKP F I EF+D+ + AE + HNA FD+G ++ E +N+ P + ++ Sbjct: 63 NEFLRDKPLFHQIAQEFFDYI--KGAELVIHNAPFDIGHMDNEFSLLNQGYPKTATFCQV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR HP +N+L++LC+RY + + R+ HGALLDS +L+DVY+ M G ++N Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYLAMTGGQVKLNL 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIW 237 N+D ++K + +S +R + ++ E H+ + + G + IW Sbjct: 181 NQNKNDDT--DQQKGGIRRLS-AQRAPLVVLSASEAEQAAHEARLDIVNNEGGHCIW 234 >gi|53718980|ref|YP_107966.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei K96243] gi|53725133|ref|YP_102525.1| DNA polymerase III subunit epsilon [Burkholderia mallei ATCC 23344] gi|126449393|ref|YP_001080124.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10247] gi|167719045|ref|ZP_02402281.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei DM98] gi|167738046|ref|ZP_02410820.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 14] gi|167815230|ref|ZP_02446910.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 91] gi|167823638|ref|ZP_02455109.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 9] gi|167845182|ref|ZP_02470690.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei B7210] gi|167893733|ref|ZP_02481135.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 7894] gi|167902185|ref|ZP_02489390.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei NCTC 13177] gi|167910426|ref|ZP_02497517.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 112] gi|167918451|ref|ZP_02505542.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei BCC215] gi|254188362|ref|ZP_04894873.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pasteur 52237] gi|52209394|emb|CAH35339.1| DNA polymerase III, epsilon chain [Burkholderia pseudomallei K96243] gi|52428556|gb|AAU49149.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC 23344] gi|126242263|gb|ABO05356.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC 10247] gi|157936041|gb|EDO91711.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pasteur 52237] Length = 240 Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 134/238 (56%), Gaps = 13/238 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VELL+ T + ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F+ I DF ++AE I HNA FD+GF++AE + + + Sbjct: 60 TTEFLSDKPKFAEIVDPLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237 ++ P ++ D P+ T EL H+ + L K+A +W Sbjct: 176 VIDMLDEAGDAHRNGDAPRMAFSGLDLPVLA-ATDAELAAHEAQLDALDKSAKGVCVW 232 >gi|58579186|ref|YP_197398.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Welgevonden] gi|58417812|emb|CAI27016.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Welgevonden] Length = 242 Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 93/239 (38%), Positives = 140/239 (58%), Gaps = 9/239 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M N +R+I D ETTGLD+ DRIIE+G +EL+D T + F ++ P R A Sbjct: 1 MSYYNGIREIALDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGIT + LKDKP FS I +F DF N+ + HNA FD+ FI EL +I K Sbjct: 60 TKIHGITVDMLKDKPKFSEIADKFLDFIG--NSVLVIHNAVFDIKFIKMELDKIQKSYNS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +++DTL +AR+K P + L++LCKR+ I++ R HGALLD+ LL VY+++M GG Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 Q + F+ N F + + S + +P ++++EE+ +H ++ + KN IW+ Sbjct: 177 QRSLNFQDNSSMFQSSDYSHDVSRSYI---EPRLYKVSEEEIVKHKMLLEKI-KNPIWN 231 >gi|283834499|ref|ZP_06354240.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC 29220] gi|291070049|gb|EFE08158.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC 29220] Length = 245 Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 138/241 (57%), Gaps = 18/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQVVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++ +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFLDYI--RGAELVIHNASFDIGFMDYEFAKLKRDIPKTNE 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ MM GG Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYL-MMTGG- 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q F D +++ T + + K T EEL H+ +Q G + + Sbjct: 185 QTTMAFSMEGDS--QQQNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQKKGGSCL 242 Query: 237 W 237 W Sbjct: 243 W 243 >gi|27479696|gb|AAO17223.1| DnaQ [Photorhabdus luminescens] Length = 248 Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 97/254 (38%), Positives = 146/254 (57%), Gaps = 29/254 (11%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA ++ Sbjct: 7 RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYIQPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLD 119 HGI+DEFL+DKP F+ + EF +F + AE I HNA FD+GFI+ E ++++D D Sbjct: 66 HGISDEFLQDKPLFADVADEFVEFI--RGAELIIHNAPFDIGFIDYEFGKLDRDIPPTAD 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR P RN+L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLDAEILADVYLIMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI-----TKEELDEHDKTIQTL--- 231 + F + E N+S ++R T + T EEL H+ + + Sbjct: 184 SLAFSMEG--------EIAGGANVSEIQRVTRSQTALKVVYATDEELAAHESRLDLVEKK 235 Query: 232 GKNAIWDRYISSNQ 245 G + +W ISS Q Sbjct: 236 GGSCLW--RISSEQ 247 >gi|308049181|ref|YP_003912747.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799] gi|307631371|gb|ADN75673.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799] Length = 240 Score = 157 bits (398), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 99/261 (37%), Positives = 146/261 (55%), Gaps = 42/261 (16%) Query: 1 MIRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M + +R+IVFD ETTG++ ++IEIG VEL++ T RT+ V++ P+ R Sbjct: 1 MTQAADLRQIVFDTETTGMNQGAGPHYLGHKLIEIGCVELINRKPTGRTYHVYIQPD-RP 59 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 EA+++HGITDEFL KP F I EF++F + AE IAHNA FD+GFI+ E + + Sbjct: 60 VDEEAIQVHGITDEFLVGKPRFGEIAEEFFEFI--RGAELIAHNANFDIGFIDYEFEMLG 117 Query: 115 K--DPLDPSRIIDTLSIAR----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + D ++DTL +AR R +L++LC+ YGI SHR+ HGALLD+ +L+ Sbjct: 118 RFGKLEDHCSLVDTLQLAREKKNRGEIQGNLNLDALCRFYGIDNSHRTLHGALLDAEILA 177 Query: 169 DVYIKMMVGGSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 DV++ M G ++NFG + EDR +R K + T + Sbjct: 178 DVFLYMTGGQVKMNFGSGDGDAGGIIRLPEDR---------------RRTKVVLA--TAD 220 Query: 220 ELDEHDKTIQTLGKNAIWDRY 240 ELD H K ++ L +AIW R+ Sbjct: 221 ELDNHTKRME-LVSDAIWLRH 240 >gi|254245771|ref|ZP_04939092.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|124870547|gb|EAY62263.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] Length = 305 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 113/174 (64%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 62 MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 120 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ + + DF ++AE I HNA FD+GF++AE R+ P + Sbjct: 121 TTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 178 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Sbjct: 179 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 232 >gi|76810101|ref|YP_333003.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 1710b] gi|121601053|ref|YP_992607.1| DNA polymerase III subunit epsilon [Burkholderia mallei SAVP1] gi|124385495|ref|YP_001026592.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10229] gi|126441990|ref|YP_001058508.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668] gi|126455280|ref|YP_001065768.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 1106a] gi|134282747|ref|ZP_01769450.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305] gi|217423557|ref|ZP_03455058.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576] gi|226196200|ref|ZP_03791785.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pakistan 9] gi|237811761|ref|YP_002896212.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei MSHR346] gi|238563612|ref|ZP_00438559.2| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse 4] gi|242318034|ref|ZP_04817050.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1106b] gi|251767848|ref|ZP_02268597.2| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20] gi|254177751|ref|ZP_04884406.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC 10399] gi|254180217|ref|ZP_04886816.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1655] gi|254197669|ref|ZP_04904091.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13] gi|254199436|ref|ZP_04905802.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH] gi|254258454|ref|ZP_04949508.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1710a] gi|254298053|ref|ZP_04965506.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 406e] gi|254358851|ref|ZP_04975124.1| DNA polymerase III, epsilon subunit [Burkholderia mallei 2002721280] gi|76579554|gb|ABA49029.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1710b] gi|121229863|gb|ABM52381.1| DNA polymerase III, epsilon subunit [Burkholderia mallei SAVP1] gi|124293515|gb|ABN02784.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC 10229] gi|126221483|gb|ABN84989.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 668] gi|126228922|gb|ABN92462.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1106a] gi|134245833|gb|EBA45924.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305] gi|147749032|gb|EDK56106.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH] gi|148027978|gb|EDK85999.1| DNA polymerase III, epsilon subunit [Burkholderia mallei 2002721280] gi|157807726|gb|EDO84896.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 406e] gi|160698790|gb|EDP88760.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC 10399] gi|169654410|gb|EDS87103.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13] gi|184210757|gb|EDU07800.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1655] gi|217393415|gb|EEC33436.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576] gi|225931786|gb|EEH27788.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pakistan 9] gi|237504517|gb|ACQ96835.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei MSHR346] gi|238520320|gb|EEP83781.1| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse 4] gi|242141273|gb|EES27675.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1106b] gi|243061566|gb|EES43752.1| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20] gi|254217143|gb|EET06527.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1710a] Length = 253 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 135/242 (55%), Gaps = 13/242 (5%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R MR+I+ D ETTGL+++ DRIIEIG VELL+ T + ++ P R + P AL Sbjct: 10 RFPDMRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPE-RDSDPGALA 68 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-- 119 +HG+T EFL DKP F+ I DF ++AE I HNA FD+GF++AE + Sbjct: 69 VHGLTTEFLSDKPKFAEIVDPLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPSFTDH 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + +IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Sbjct: 127 CAGVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG-- 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---- 235 Q + ++ P ++ D P+ T EL H+ + L K+A Sbjct: 185 QESLVIDMLDEAGDAHRNGDAPRMAFSGLDLPVLA-ATDAELAAHEAQLDALDKSAKGVC 243 Query: 236 IW 237 +W Sbjct: 244 VW 245 >gi|148546962|ref|YP_001267064.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1] gi|148511020|gb|ABQ77880.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1] Length = 252 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 132/240 (55%), Gaps = 8/240 (3%) Query: 1 MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPL 118 + +HGITD FL KP F + EF+ F Q A + HNA FDVGFIN E + + D Sbjct: 60 INVHGITDAFLVGKPRFGDVAEEFFQFI--QGATLVIHNAAFDVGFINNEFALLGQQDRA 117 Query: 119 DPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D S+ I+DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M Sbjct: 118 DISQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G + ++ + + ++ R + EEL+ H + + + K+A Sbjct: 178 GGQTSLSLAGNGADAEEDGQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIAKSA 237 >gi|329847376|ref|ZP_08262404.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum C19] gi|328842439|gb|EGF92008.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum C19] Length = 229 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 137/231 (59%), Gaps = 8/231 (3%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +IV D ETTG+D K R+IEIG +E+ D T RTF F+ P R+ P+A+++HGI++ Sbjct: 4 EIVLDTETTGIDHRKGHRLIEIGCIEIEDLLPTGRTFHHFVDPE-REIEPDAIRVHGISN 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ KP F I E +F ++ IAHNA FD GFIN E++R+++ + IDTL Sbjct: 63 EKVRGKPKFGQIADELCEFIGDKRI--IAHNAAFDRGFINMEMERLSRVCHPDDQWIDTL 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR K P N L++LC+R+ I+++ R HGAL+D+ LL+ VY++++ GG + + Sbjct: 121 ELARNKFPGMANSLDALCRRFNISLAERDLHGALIDARLLASVYLELL-GGKERGLDLEM 179 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIW 237 R E + IS R +PL RIT E+ H+ + + L ++W Sbjct: 180 ASARI--EAVQVANPISYGARPRPLAPRITAAEVAAHEAFVAKYLKDKSLW 228 >gi|229845439|ref|ZP_04465569.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1] gi|229811635|gb|EEP47334.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1] Length = 256 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 98/255 (38%), Positives = 144/255 (56%), Gaps = 29/255 (11%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F I +F D+ N AE + HNA FDVGF++ E ++N + Sbjct: 62 IKVHGITDEMLADKPEFKEIAQDFLDYIN--GAELLIHNAPFDVGFMDYEFCKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 G F + +++ +E K V LK +P T +EL H + + Sbjct: 179 GQTNLFDAEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQP-----TDDELQAHLELL 233 Query: 229 QTL----GKNAIWDR 239 + + G N +WD+ Sbjct: 234 KMINKKSGNNCLWDK 248 >gi|62178830|ref|YP_215247.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224582105|ref|YP_002635903.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62126463|gb|AAX64166.1| DNA polymerase III, epsilon subunit, 3-5 exonucleolytic proofreading function [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224466632|gb|ACN44462.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713281|gb|EFZ04852.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 246 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 90/242 (37%), Positives = 139/242 (57%), Gaps = 19/242 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDK---TIQTLGKNA 235 + F + R ++ + T+ I R + +F T+EEL H+ +Q G + Sbjct: 187 SMTFAMEGETQR--QQGEATIQRIVRQASRLRVVFA--TEEELAAHESRLDLVQKKGGSC 242 Query: 236 IW 237 +W Sbjct: 243 LW 244 >gi|313498009|gb|ADR59375.1| DnaQ [Pseudomonas putida BIRD-1] Length = 252 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 132/240 (55%), Gaps = 8/240 (3%) Query: 1 MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPL 118 + +HGITD FL KP F + EF+ F Q A + HNA FDVGFIN E + + D Sbjct: 60 INVHGITDAFLVGKPRFGDVAEEFFQFI--QGATLVIHNAAFDVGFINNEFALLGQQDRA 117 Query: 119 DPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D S+ I+DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M Sbjct: 118 DISQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G + ++ + + ++ R + EEL+ H + + + K+A Sbjct: 178 GGQTSLSLAGNGADAEEDGQGAGGSEIRRIVGRTPGRVIMASAEELEAHAERLAAIAKSA 237 >gi|170768002|ref|ZP_02902455.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627] gi|170123490|gb|EDS92421.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627] Length = 243 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 138/241 (57%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL+ H+ +Q G + + Sbjct: 182 QTSMAFAMEGETQQQQGEVTIQRI-VRQASKLRIVFATDEELEAHEARLDLVQKKGGSCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|319794398|ref|YP_004156038.1| DNA polymerase iii, epsilon subunit [Variovorax paradoxus EPS] gi|315596861|gb|ADU37927.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus EPS] Length = 240 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 138/231 (59%), Gaps = 11/231 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++N DR+IE+G VEL T ++ P R++ +ALK+HG+T Sbjct: 3 RQIVLDTETTGLSAENGDRVIELGCVELFARKLTGNDLHIYFNPE-RESHEDALKVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 +FL+DKP F+++ ++ ++ + AE I HNA FDVGF+N E +R PL + + Sbjct: 62 TDFLRDKPKFATLANDIIEYL--RGAELIIHNAAFDVGFLNKEFERAGLPPLRTFVAEVT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++A+ +P RN L++LC R+G+ S+R+ HGA LD+ LL+DVYI + G + Sbjct: 120 DTLAMAKLVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLID 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 +NE + TV I L + + P+ ++EL H+ + L K++ Sbjct: 180 VASNE----PAQGTTVVAIDLSQFELPVIA-AGEQELAAHEAVLSQLDKSS 225 >gi|91793373|ref|YP_563024.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] gi|91715375|gb|ABE55301.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] Length = 242 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 119/191 (62%), Gaps = 14/191 (7%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG++ RIIEIG VE+++ T RT+ ++ P G+ PEA+ Sbjct: 9 RQIILDTETTGMNQAGGAIYIGHRIIEIGCVEVINRRLTGRTYHQYINP-GQSIDPEAIA 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPL 118 +HGITDE + ++P F I EF DF Q AE +AHNA FDV F++ E LQ Sbjct: 68 VHGITDERVANEPRFHQIAQEFIDFI--QGAEIVAHNASFDVSFMDHEFSMLQPRGPKTK 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D + I+D+L+IA+R HP +N+L++LCKRYGI S R+ HGALLD+ +L+DVY+ M G Sbjct: 126 DITDILDSLAIAKRLHPGQKNNLDALCKRYGIDNSRRTYHGALLDAEILADVYLLMT--G 183 Query: 179 SQINFGFKTNE 189 QI F + Sbjct: 184 GQIKFNLSNEQ 194 >gi|30061767|ref|NP_835938.1| DNA polymerase III subunit epsilon [Shigella flexneri 2a str. 2457T] gi|56479626|ref|NP_706156.2| DNA polymerase III subunit epsilon [Shigella flexneri 2a str. 301] gi|218547665|ref|YP_002381456.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ATCC 35469] gi|30040009|gb|AAP15743.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 2457T] gi|56383177|gb|AAN41863.2| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 301] gi|218355206|emb|CAQ87813.1| DNA polymerase III epsilon subunit [Escherichia fergusonii ATCC 35469] gi|313646728|gb|EFS11187.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 2457T] gi|332754119|gb|EGJ84489.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2747-71] gi|332761998|gb|EGJ92270.1| DNA polymerase III, epsilon subunit [Shigella flexneri 4343-70] gi|332764639|gb|EGJ94869.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-671] gi|332768614|gb|EGJ98795.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2930-71] gi|333009688|gb|EGK29138.1| DNA polymerase III, epsilon subunit [Shigella flexneri VA-6] gi|333010755|gb|EGK30181.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-272] gi|333021254|gb|EGK40507.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-227] gi|333022178|gb|EGK41418.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-304] Length = 243 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|170683943|ref|YP_001742338.1| DNA polymerase III subunit epsilon [Escherichia coli SMS-3-5] gi|331651120|ref|ZP_08352145.1| DNA polymerase III, epsilon subunit [Escherichia coli M718] gi|331671744|ref|ZP_08372540.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280] gi|170521661|gb|ACB19839.1| DNA polymerase III, epsilon subunit [Escherichia coli SMS-3-5] gi|281599565|gb|ADA72549.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2002017] gi|324111223|gb|EGC05206.1| DNA polymerase III [Escherichia fergusonii B253] gi|325496141|gb|EGC94000.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ECD227] gi|331050861|gb|EGI22913.1| DNA polymerase III, epsilon subunit [Escherichia coli M718] gi|331070733|gb|EGI42092.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280] Length = 246 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|218557151|ref|YP_002390064.1| DNA polymerase III subunit epsilon [Escherichia coli S88] gi|218688085|ref|YP_002396297.1| DNA polymerase III subunit epsilon [Escherichia coli ED1a] gi|218698838|ref|YP_002406467.1| DNA polymerase III subunit epsilon [Escherichia coli IAI39] gi|218703464|ref|YP_002410983.1| DNA polymerase III subunit epsilon [Escherichia coli UMN026] gi|293403294|ref|ZP_06647385.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412] gi|293408304|ref|ZP_06652143.1| DNA polymerase III [Escherichia coli B354] gi|298378908|ref|ZP_06988789.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302] gi|218363920|emb|CAR01585.1| DNA polymerase III epsilon subunit [Escherichia coli S88] gi|218368824|emb|CAR16572.1| DNA polymerase III epsilon subunit [Escherichia coli IAI39] gi|218425649|emb|CAR06436.1| DNA polymerase III epsilon subunit [Escherichia coli ED1a] gi|218430561|emb|CAR11427.1| DNA polymerase III epsilon subunit [Escherichia coli UMN026] gi|221361649|emb|CAX20320.1| DNA polymerase III, epsilon subunit [Escherichia coli] gi|291429147|gb|EFF02167.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412] gi|291471482|gb|EFF13965.1| DNA polymerase III [Escherichia coli B354] gi|294493054|gb|ADE91810.1| DNA polymerase III, epsilon subunit [Escherichia coli IHE3034] gi|298280021|gb|EFI21525.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302] gi|323948751|gb|EGB44651.1| DNA polymerase III [Escherichia coli H252] gi|323958799|gb|EGB54498.1| DNA polymerase III [Escherichia coli H263] Length = 243 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 182 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|269140166|ref|YP_003296867.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202] gi|267985827|gb|ACY85656.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202] gi|304559999|gb|ADM42663.1| DNA polymerase III epsilon subunit [Edwardsiella tarda FL6-60] Length = 243 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 141/242 (58%), Gaps = 19/242 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFTV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+D+FL DKPSF+ + EF F + AE + HNA FD+GF++ E ++ +D P + Sbjct: 66 HGISDDFLLDKPSFAEVADEFLAFI--RGAELVIHNAPFDIGFMDYEFAKLGRDLPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDK---TIQTLGKNA 235 Q + F ++ D + + + + ++ K L ++ EL H++ +Q G + Sbjct: 182 QTSLAFSSDGDGTSQSQASEIRRV--VRGAKGLRVVYASEAELAAHEQRLDLVQKKGGSC 239 Query: 236 IW 237 +W Sbjct: 240 LW 241 >gi|284009180|emb|CBA76234.1| DNA polymerase III subunit epsilon [Arsenophonus nasoniae] Length = 254 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 145/245 (59%), Gaps = 24/245 (9%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGIHYEGHNIIEIGAVEVINRRLTGRHFHVYIKP-ARLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS- 121 HGI+DEFL+DKP+F+ I EF DF + AE + HNA FD+GF++ E ++N+D + P+ Sbjct: 66 HGISDEFLQDKPTFAQIADEFLDFI--RGAELVIHNAPFDIGFMDYEFSKLNRD-IPPTA 122 Query: 122 ---RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 123 NFCQITDSLVLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLDAEILAEVYMAMT--G 180 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDKTIQTL----G 232 Q + F + + + + V I KR + + +EE+ H+ + + G Sbjct: 181 GQTSLAFSVDSEPGSEVYRGDVKRI---KRQATGLSVVYANQEEIAAHEARLDLIEKKGG 237 Query: 233 KNAIW 237 K ++W Sbjct: 238 KISLW 242 >gi|26246159|ref|NP_752198.1| DNA polymerase III subunit epsilon [Escherichia coli CFT073] gi|91209283|ref|YP_539269.1| DNA polymerase III subunit epsilon [Escherichia coli UTI89] gi|117622497|ref|YP_851410.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1] gi|227884794|ref|ZP_04002599.1| DNA polymerase III subunit epsilon [Escherichia coli 83972] gi|237707792|ref|ZP_04538273.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA] gi|300900029|ref|ZP_07118226.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1] gi|300936085|ref|ZP_07151027.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1] gi|300988192|ref|ZP_07178593.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1] gi|331656205|ref|ZP_08357167.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206] gi|331681596|ref|ZP_08382232.1| DNA polymerase III, epsilon subunit [Escherichia coli H299] gi|26106556|gb|AAN78742.1|AE016755_242 DNA polymerase III, epsilon chain [Escherichia coli CFT073] gi|91070857|gb|ABE05738.1| DNA polymerase III epsilon chain [Escherichia coli UTI89] gi|115511621|gb|ABI99695.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1] gi|226899002|gb|EEH85261.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA] gi|227838235|gb|EEJ48701.1| DNA polymerase III subunit epsilon [Escherichia coli 83972] gi|300356434|gb|EFJ72304.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1] gi|300407506|gb|EFJ91044.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1] gi|300458760|gb|EFK22253.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1] gi|307552062|gb|ADN44837.1| DNA polymerase III, epsilon chain [Escherichia coli ABU 83972] gi|307628303|gb|ADN72607.1| DNA polymerase III subunit epsilon [Escherichia coli UM146] gi|315289701|gb|EFU49094.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 110-3] gi|315292140|gb|EFU51492.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 153-1] gi|315300178|gb|EFU59415.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 16-3] gi|331054453|gb|EGI26462.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206] gi|331081170|gb|EGI52332.1| DNA polymerase III, epsilon subunit [Escherichia coli H299] Length = 246 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 185 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|332286832|ref|YP_004418743.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7] gi|330430785|gb|AEC22119.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7] Length = 236 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 82/183 (44%), Positives = 115/183 (62%), Gaps = 6/183 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD ++ R++E+ VE+ + S T R ++L P GR + PEAL +HG+ Sbjct: 1 MRQIVLDTETTGLDPAQGHRVVELACVEMENRSLTGRHLHLYLNP-GRDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL P F + + D+ ++AE I HNA FDV F+NAEL R + +I Sbjct: 60 TTEFLSGHPRFEEVAQQLVDYV--KDAEVIIHNAAFDVKFLNAELTRAGLPVFNSLCGKI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR HP RN L++LC+RYGI+ +HR+ HGALLDS LL+DV++ M G + Sbjct: 118 TDSLLHARELHPGKRNSLDALCERYGISNAHRTLHGALLDSELLADVWLAMTRGQDALLM 177 Query: 184 GFK 186 F+ Sbjct: 178 DFE 180 >gi|301050549|ref|ZP_07197422.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1] gi|300297757|gb|EFJ54142.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1] Length = 246 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 138/241 (57%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 + F + + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 187 SMTFAMEGETQQ--QQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|300112990|ref|YP_003759565.1| DNA polymerase III subunit epsilon [Nitrosococcus watsonii C-113] gi|299538927|gb|ADJ27244.1| DNA polymerase III, epsilon subunit [Nitrosococcus watsonii C-113] Length = 243 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 134/240 (55%), Gaps = 14/240 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K RIIEIG VEL +T +TF +L P R+ ALK+HG+ Sbjct: 1 MRQIILDTETTGLEPKEGHRIIEIGGVELNCRRRTGQTFHCYLNPE-REVDEGALKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS---R 122 ++EFL DKP F I EF F + AE + HNA FDVGF++ EL + + S + Sbjct: 60 SNEFLSDKPRFIEIAEEFLAFI--KGAELVIHNAPFDVGFLDHELYLLGSNWGKVSVNCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR++HP +N+L++LCKRYGI S R HGALLD+ +L+ VY+ M G Q++ Sbjct: 118 VLDTLQLARQRHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILAGVYLAMT--GGQVS 175 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKNA----IW 237 D + PL R ++EE H+ + + K + +W Sbjct: 176 LSLHEYGDNSTSSRSGEGNYRPVSAERAPLKIARASREEQRAHEACLTAIDKTSAGACVW 235 >gi|288549963|ref|ZP_05968783.2| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC 35316] gi|288316782|gb|EFC55720.1| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC 35316] Length = 246 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 142/244 (58%), Gaps = 23/244 (9%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF ++ + AE + HNA FD+GF++ E ++N+D Sbjct: 69 HGIADEFLLDKPTFADVADEFLEYI--KGAELVIHNASFDIGFMDYEFSKLNRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++ARR P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKVTDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGK 233 + F + NE + + E ++ V S L+ + EEL +H+ +Q G Sbjct: 187 SMKFSME-NESQQSQGEAGIQRLVRQASRLR-----VVHASDEELLKHESRLDLVQKKGG 240 Query: 234 NAIW 237 + +W Sbjct: 241 SCMW 244 >gi|260431958|ref|ZP_05785929.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260415786|gb|EEX09045.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 240 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 96/247 (38%), Positives = 138/247 (55%), Gaps = 22/247 (8%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D ++ DRI+EIGA+EL ++ T T+ V++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAIELWNHVATGETYHVYINPE-RSMPAEAFGVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L KDKP F+ I F DF +A + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQKPEPGQITLKDKPVFAQIGQAFRDFVG--DARLVIHNAAFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + P+ + +DTL+IAR++ P S L++LC+R+ I S+R HGALLDS +L++VY+ Sbjct: 118 MGLPPIPMEQALDTLAIARKRFPGSPASLDALCRRFNIDNSNRVLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 + ++GG Q +FG + R PL RIT EE H+ ++ LG Sbjct: 178 E-LIGGRQPDFGLSAAR----SDSGGGGETWRPGPRPAPLPPRITAEERAAHEAFVKKLG 232 Query: 233 KNAIWDR 239 NA+W R Sbjct: 233 DNALWTR 239 >gi|161504623|ref|YP_001571735.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865970|gb|ABX22593.1| hypothetical protein SARI_02738 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 246 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/242 (37%), Positives = 138/242 (57%), Gaps = 19/242 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDK---TIQTLGKNA 235 + F + R ++ + T+ I R + +F T EEL H+ +Q G + Sbjct: 187 SMTFAIEGETQR--QQGEATIQRIVRQASRLRVVFA--TDEELAAHESRLDLVQKKGGSC 242 Query: 236 IW 237 +W Sbjct: 243 LW 244 >gi|191171395|ref|ZP_03032944.1| DNA polymerase III, epsilon subunit [Escherichia coli F11] gi|190908329|gb|EDV67919.1| DNA polymerase III, epsilon subunit [Escherichia coli F11] gi|222032040|emb|CAP74779.1| DNA polymerase III subunit epsilon [Escherichia coli LF82] gi|312944818|gb|ADR25645.1| DNA polymerase III subunit epsilon [Escherichia coli O83:H1 str. NRG 857C] gi|320197298|gb|EFW71914.1| DNA polymerase III epsilon subunit [Escherichia coli WV_060327] Length = 243 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 182 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|16272104|ref|NP_438306.1| DNA polymerase III subunit epsilon [Haemophilus influenzae Rd KW20] gi|1169396|sp|P43745|DPO3E_HAEIN RecName: Full=DNA polymerase III subunit epsilon gi|1573090|gb|AAC21808.1| DNA polymerase III, epsilon subunit (dnaQ) [Haemophilus influenzae Rd KW20] Length = 256 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 97/260 (37%), Positives = 146/260 (56%), Gaps = 29/260 (11%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + IIEIGAVEL++ T +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPD-RPXDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 G F + +++ +E K V LK +P T +EL H + + Sbjct: 179 GQTNLFDEEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLEFL 233 Query: 229 QTL----GKNAIWDRYISSN 244 + + G N +WD+ +N Sbjct: 234 KMMNKKSGNNCLWDKRFGNN 253 >gi|110640430|ref|YP_668158.1| DNA polymerase III subunit epsilon [Escherichia coli 536] gi|300990975|ref|ZP_07179425.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1] gi|306813365|ref|ZP_07447558.1| DNA polymerase III subunit epsilon [Escherichia coli NC101] gi|110342022|gb|ABG68259.1| DNA polymerase III, epsilon chain [Escherichia coli 536] gi|300305641|gb|EFJ60161.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1] gi|305854128|gb|EFM54567.1| DNA polymerase III subunit epsilon [Escherichia coli NC101] gi|324009120|gb|EGB78339.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 57-2] gi|324011829|gb|EGB81048.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 60-1] Length = 246 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 185 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|281177435|dbj|BAI53765.1| DNA polymerase III epsilon subunit [Escherichia coli SE15] gi|330910061|gb|EGH38571.1| DNA polymerase 3 epsilon subunit [Escherichia coli AA86] Length = 243 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 136/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + Sbjct: 182 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|215485371|ref|YP_002327802.1| DNA polymerase III subunit epsilon [Escherichia coli O127:H6 str. E2348/69] gi|312964723|ref|ZP_07778974.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75] gi|215263443|emb|CAS07763.1| DNA polymerase III, epsilon subunit [Escherichia coli O127:H6 str. E2348/69] gi|312290744|gb|EFR18622.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75] Length = 243 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 136/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|157147189|ref|YP_001454508.1| DNA polymerase III subunit epsilon [Citrobacter koseri ATCC BAA-895] gi|157084394|gb|ABV14072.1| hypothetical protein CKO_02968 [Citrobacter koseri ATCC BAA-895] Length = 246 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/241 (37%), Positives = 138/241 (57%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS- 121 HGI DEFL DKP F+ + +F ++ + AE + HNA FD+GF++ E ++++ S Sbjct: 69 HGIADEFLLDKPVFADVVDDFLEYI--RGAELVIHNASFDIGFMDYEFAKLSRGIPKTSE 126 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++ARR P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G Sbjct: 127 FCKITDSLALARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMT--GG 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 185 QTSMAFSMEGETQQQQGEATIQRI-VRQASKLRVVLATDEELMAHESRLDLVQKKGGSCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|212709216|ref|ZP_03317344.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM 30120] gi|212688128|gb|EEB47656.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM 30120] Length = 253 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/244 (38%), Positives = 143/244 (58%), Gaps = 22/244 (9%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P+ R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI+DEFL+DKP F+ I EF +F + AE + HNA FD+GF++ E +++N+ + P+ Sbjct: 66 HGISDEFLQDKPVFADIADEFIEFI--RGAELVIHNAPFDIGFMDYEFRKLNRG-IPPTA 122 Query: 123 ----IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G Sbjct: 123 EFCTITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMT--G 180 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTL----GK 233 Q + F + E+ + I + K L+ + EE+ EH+ + + GK Sbjct: 181 GQTSLAFSMESESSNTEQANAIQRIERPVSGLKVLYA--SDEEVAEHEARLDIVDKKGGK 238 Query: 234 NAIW 237 +W Sbjct: 239 PCLW 242 >gi|331645384|ref|ZP_08346488.1| DNA polymerase III, epsilon subunit [Escherichia coli M605] gi|331045546|gb|EGI17672.1| DNA polymerase III, epsilon subunit [Escherichia coli M605] Length = 246 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 136/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + Sbjct: 185 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|209517197|ref|ZP_03266042.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] gi|209502333|gb|EEA02344.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] Length = 244 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 113/174 (64%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+ + DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNPRGGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ I +F DF Q+A+ I HNA FD+GF++ E + P+ I Sbjct: 60 TTEFLSDKPKFAEIIDQFRDFI--QDADLIIHNAPFDIGFLDTEFALLGLPPVSTYCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Sbjct: 118 IDTLAQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171 >gi|148827278|ref|YP_001292031.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG] gi|148718520|gb|ABQ99647.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG] Length = 256 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/260 (37%), Positives = 147/260 (56%), Gaps = 29/260 (11%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P R++L++LC+R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINFG---------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 G F +++ +E K V LK +P T +EL H + + Sbjct: 179 GQTNLFDEEESVESGVIHVMQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLEFL 233 Query: 229 QTL----GKNAIWDRYISSN 244 + + G N +WD+ +N Sbjct: 234 KMMNKKSGNNCLWDKRFGNN 253 >gi|73667124|ref|YP_303140.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Ehrlichia canis str. Jake] gi|72394265|gb|AAZ68542.1| DNA polymerase III, epsilon subunit :DNA polymerase 3, epsilon subunit [Ehrlichia canis str. Jake] Length = 239 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 92/233 (39%), Positives = 138/233 (59%), Gaps = 9/233 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R++V D ETTGLD DRIIEIG VEL+D T + F ++ P R A K+HGI Sbjct: 7 VREVVLDTETTGLDPDGGDRIIEIGCVELIDRVFTGKVFHEYINPE-RDIPYYATKIHGI 65 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + LKDKP FS I +F +F N N+ + HNA FD+ FI EL +I KD +++D Sbjct: 66 TIDMLKDKPKFSEIADKFLEFVN--NSVLVIHNAGFDIKFIKMELDKIQKDYDSDFQVVD 123 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR+K P + L++LC+R+ I++ R HGALLD+ LL VY+++M GG Q + F Sbjct: 124 TLILARKKFPGVSSTLDALCRRFNISLQDRKFHGALLDATLLGKVYVQLM-GGLQRSLDF 182 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + + + + N +P F +++EE+ +H ++ + KN IW+ Sbjct: 183 SYSNNII---DTSNINNQCEDVAIEPRFYEVSEEEITQHKMLLEKI-KNPIWN 231 >gi|257483794|ref|ZP_05637835.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 178 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/172 (48%), Positives = 109/172 (63%), Gaps = 8/172 (4%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ + RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSR 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + D Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177 >gi|258541965|ref|YP_003187398.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO 3283-01] gi|256633043|dbj|BAH99018.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636100|dbj|BAI02069.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639155|dbj|BAI05117.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642209|dbj|BAI08164.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645264|dbj|BAI11212.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648319|dbj|BAI14260.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651372|dbj|BAI17306.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654363|dbj|BAI20290.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-12] Length = 224 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/235 (39%), Positives = 132/235 (56%), Gaps = 18/235 (7%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTGLD + DR+IEI A+EL+ T R F + P R EA ++HG T Sbjct: 3 RSILFDTETTGLDPATGDRVIEIAALELVGDLPTGRNFHTLIDPE-RDVPEEASRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ KP F+ I +F F + IAHNA+FD GF+NAEL+R K L R++DT Sbjct: 62 RADLEGKPKFAEIADDFLAFVGDD--PLIAHNARFDFGFMNAELKRAGKKTLGLDRMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +AR + P N L++LC+R+G+ +S R+ H ALLD LL+DVY+++M GG Q G Sbjct: 120 LDMARERFPGMPNSLDALCRRFGVDLSARTTHNALLDCKLLADVYVELM-GGRQHGLGLM 178 Query: 187 TNEDRFFKEEKKTVPNI---SLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 E +P++ + R K + + T EEL H + L K +W+ Sbjct: 179 A--------EDGQLPSVMYEGPVNR-KAVRVQPTAEELAAHAAFVAGL-KEPVWE 223 >gi|294340001|emb|CAZ88365.1| DNA polymerase III subunit epsilon [Thiomonas sp. 3As] Length = 239 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 143/241 (59%), Gaps = 25/241 (10%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL+ + DRIIE+ VEL + T + + +L P+ R + P+ALK+HG+T Sbjct: 3 RQIVLDTETTGLNPASGDRIIEVAGVELFNRRLTGKHYHAYLNPD-RASHPDALKVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD------PLDP 120 +EFL DKP F+ I + +F ++AE I HNA FD F++AEL+R+N+ PL Sbjct: 62 EEFLSDKPRFAQIADDLLEFV--RDAEIIIHNAPFDCAFLDAELERLNRPAFKQHVPL-- 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + DTL++A+ + P N+L++LCKR+GI +HR+ HGALLD+ LL++VY+ + G Sbjct: 118 --VTDTLAMAKLQFPGKFNNLDALCKRFGIDNAHRTLHGALLDAELLAEVYLSLTRGQES 175 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAI 236 + +T + + + + + SLL R + +E H+ +Q L K +I Sbjct: 176 LVIDLETPQQQMSVASHR-LDHFSLLVRAP------SSDEQAAHEAFLQLLDKKSQGKSI 228 Query: 237 W 237 W Sbjct: 229 W 229 >gi|333008996|gb|EGK28455.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-218] Length = 243 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAVFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|237807686|ref|YP_002892126.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187] gi|237499947|gb|ACQ92540.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187] Length = 249 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 137/235 (58%), Gaps = 14/235 (5%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R ++ D ETTG++ RIIEIG VE+++ T + V++ P+ R EA++ Sbjct: 8 RYVILDTETTGMNQSGGPVYIGHRIIEIGCVEVINRRLTGNHYHVYIKPD-RLVDEEAIR 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLD 119 +HGITD FL DKP F++I EF DF + AE + HNA FDVGFI+ E ++ + D Sbjct: 67 VHGITDAFLADKPPFAAIAQEFRDFI--RGAELVIHNASFDVGFIDHEFNKLGWTERVKD 124 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R+ D+L++AR + P RN L++LC R+GI SHR+ HGALLD+ +L+DVY+ M G + Sbjct: 125 ICRVTDSLALARGQFPGKRNSLDALCTRFGIDNSHRTLHGALLDAEILADVYLLMTGGQT 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGK 233 ++ N++ + + +++R+ L + +EL H+K + + K Sbjct: 185 RLELHNTVNDNN--SASSASAQQLKMIQRNGSLKVLSASADELAAHEKRLDLVAK 237 >gi|83749368|ref|ZP_00946363.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551] gi|207742873|ref|YP_002259265.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum IPO1609] gi|83723945|gb|EAP71128.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551] gi|206594267|emb|CAQ61194.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum IPO1609] Length = 242 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/176 (46%), Positives = 115/176 (65%), Gaps = 10/176 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R ++ P R+ P A+ +HGI Sbjct: 1 MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDPGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPS 121 T+EF+ DKP F+ + +E D+ Q AE I HNA FD+GF++ E +R+ ++ LD Sbjct: 60 TNEFVADKPKFAEVVAEIRDYV--QGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGH 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL ARR P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G Sbjct: 118 --IDTLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG 171 >gi|195938587|ref|ZP_03083969.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. EC4024] gi|217324145|ref|ZP_03440229.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. TW14588] gi|217320366|gb|EEC28790.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. TW14588] gi|320638235|gb|EFX07963.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. G5101] gi|320643619|gb|EFX12763.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. 493-89] gi|320654630|gb|EFX22631.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660198|gb|EFX27708.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str. USDA 5905] Length = 246 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ + + + K T EEL H+ +Q G + + Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRL-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|15799891|ref|NP_285903.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 EDL933] gi|15829465|ref|NP_308238.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. Sakai] gi|82775601|ref|YP_401948.1| DNA polymerase III subunit epsilon [Shigella dysenteriae Sd197] gi|168750163|ref|ZP_02775185.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4113] gi|168757208|ref|ZP_02782215.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4401] gi|168763423|ref|ZP_02788430.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4501] gi|168776181|ref|ZP_02801188.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4196] gi|168782940|ref|ZP_02807947.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4076] gi|168789658|ref|ZP_02814665.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC869] gi|168800383|ref|ZP_02825390.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC508] gi|189403362|ref|ZP_02794985.2| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4486] gi|208809432|ref|ZP_03251769.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4206] gi|208813334|ref|ZP_03254663.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4045] gi|208818379|ref|ZP_03258699.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4042] gi|209400894|ref|YP_002268818.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4115] gi|254791342|ref|YP_003076179.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. TW14359] gi|261223754|ref|ZP_05938035.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261255836|ref|ZP_05948369.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. FRIK966] gi|291281032|ref|YP_003497850.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str. CB9615] gi|293413470|ref|ZP_06656119.1| DNA polymerase III [Escherichia coli B185] gi|309787110|ref|ZP_07681722.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617] gi|12512943|gb|AAG54511.1|AE005196_9 DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EDL933] gi|13359667|dbj|BAB33634.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. Sakai] gi|81239749|gb|ABB60459.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae Sd197] gi|187768434|gb|EDU32278.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4196] gi|188015573|gb|EDU53695.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4113] gi|188999632|gb|EDU68618.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4076] gi|189355702|gb|EDU74121.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4401] gi|189361034|gb|EDU79453.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4486] gi|189366358|gb|EDU84774.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4501] gi|189370736|gb|EDU89152.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC869] gi|189377309|gb|EDU95725.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC508] gi|208729233|gb|EDZ78834.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4206] gi|208734611|gb|EDZ83298.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4045] gi|208738502|gb|EDZ86184.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4042] gi|209162294|gb|ACI39727.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4115] gi|209745474|gb|ACI71044.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745476|gb|ACI71045.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745478|gb|ACI71046.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745480|gb|ACI71047.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745482|gb|ACI71048.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|254590742|gb|ACT70103.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. TW14359] gi|290760905|gb|ADD54866.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str. CB9615] gi|291433528|gb|EFF06501.1| DNA polymerase III [Escherichia coli B185] gi|308924688|gb|EFP70183.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617] gi|320190264|gb|EFW64914.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. EC1212] gi|320650355|gb|EFX18832.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. H 2687] gi|320665449|gb|EFX32511.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. LSU-61] gi|326338809|gb|EGD62628.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. 1044] gi|326342399|gb|EGD66179.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. 1125] Length = 243 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ + + + K T EEL H+ +Q G + + Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRL-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|300949353|ref|ZP_07163365.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1] gi|300958303|ref|ZP_07170446.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1] gi|301029642|ref|ZP_07192704.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1] gi|301645470|ref|ZP_07245407.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1] gi|307136810|ref|ZP_07496166.1| DNA polymerase III subunit epsilon [Escherichia coli H736] gi|331640665|ref|ZP_08341812.1| DNA polymerase III, epsilon subunit [Escherichia coli H736] gi|1552785|gb|AAB08637.1| DNA polymerase III epsilon chain [Escherichia coli] gi|260450588|gb|ACX41010.1| DNA polymerase III, epsilon subunit [Escherichia coli DH1] gi|299877469|gb|EFI85680.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1] gi|300315009|gb|EFJ64793.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1] gi|300451236|gb|EFK14856.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1] gi|301076259|gb|EFK91065.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1] gi|331040039|gb|EGI12247.1| DNA polymerase III, epsilon subunit [Escherichia coli H736] Length = 246 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EE+ H+ +Q G + + Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|16128202|ref|NP_414751.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. MG1655] gi|89107090|ref|AP_000870.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. W3110] gi|170079846|ref|YP_001729166.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. DH10B] gi|238899608|ref|YP_002925404.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952] gi|256024146|ref|ZP_05438011.1| DNA polymerase III subunit epsilon [Escherichia sp. 4_1_40B] gi|118805|sp|P03007|DPO3E_ECOLI RecName: Full=DNA polymerase III subunit epsilon gi|42063|emb|CAA27661.1| unnamed protein product [Escherichia coli] gi|147679|gb|AAA24564.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|1786409|gb|AAC73320.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. MG1655] gi|4902952|dbj|BAA77886.1| DNA polymerase III epsilon subunit [Escherichia coli str. K12 substr. W3110] gi|169887681|gb|ACB01388.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. DH10B] gi|238860830|gb|ACR62828.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952] gi|315134900|dbj|BAJ42059.1| DNA polymerase III subunit epsilon [Escherichia coli DH1] gi|315616887|gb|EFU97504.1| DNA polymerase III, epsilon subunit [Escherichia coli 3431] gi|323943406|gb|EGB39558.1| DNA polymerase III [Escherichia coli E482] gi|332341543|gb|AEE54877.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli UMNK88] Length = 243 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EE+ H+ +Q G + + Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|292487330|ref|YP_003530202.1| DNA polymerase III subunit epsilon [Erwinia amylovora CFBP1430] gi|292898576|ref|YP_003537945.1| DNA polymerase III subunit epsilon [Erwinia amylovora ATCC 49946] gi|291198424|emb|CBJ45532.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC 49946] gi|291552749|emb|CBA19794.1| DNA polymerase III epsilon subunit [Erwinia amylovora CFBP1430] gi|312171436|emb|CBX79694.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC BAA-2158] Length = 249 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 142/248 (57%), Gaps = 25/248 (10%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R PEA Sbjct: 5 NTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLIDPEA 63 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN---AELQRINKD 116 +HGI DEFL DKP+F+ I +F + N AE + HNA FD+GF++ A+LQR Sbjct: 64 FGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQRGIAK 121 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +I D+L++AR+ P RN L++LC RY I S R+ HGALLDS +L++V++ M Sbjct: 122 TETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFLTMT- 180 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL----FTRITKEELDEHDKTIQTL- 231 G Q + F +R +++ +T+ I+ +P R +++EL H+ + + Sbjct: 181 -GGQTSLAFSMEGEREKQQDGETIQRIA-----RPASGLRVVRASEQELMAHEARLDLVE 234 Query: 232 --GKNAIW 237 G + +W Sbjct: 235 KKGGSCLW 242 >gi|85713113|ref|ZP_01044147.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145] gi|85693061|gb|EAQ31025.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145] Length = 236 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 138/238 (57%), Gaps = 12/238 (5%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG++ + RIIEIG VEL+D T F V++ P R EA+ +HGI Sbjct: 1 MRQIVLDTETTGINPDDGHRIIEIGCVELIDRKPTGNHFHVYINPE-RVVEDEAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122 T+E+L DKP F+ + F DF + ++ + HNA FDVG ++AE +R+ K D Sbjct: 60 TNEYLADKPVFAQVVDAFIDFI--KGSQLVIHNAPFDVGHMDAEFKRLGKMYGKTYDYCD 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++D+L +AR K P RN L++LCK + + S R HGALLD+ +L+DVY+ M G + ++ Sbjct: 118 VLDSLQLAREKRPGQRNSLDALCKAFHVDNSARELHGALLDAEILADVYLAMTGGQTALS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAIW 237 + ++ +E + + ++ R + R T +E ++H + +++ G +W Sbjct: 178 LHGQNQDNE--NQEPGAIAHQAIKNRPQLKVLRATADEEEQHQQRLAIVKSEGGACLW 233 >gi|161615575|ref|YP_001589540.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161364939|gb|ABX68707.1| hypothetical protein SPAB_03350 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 246 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 140/242 (57%), Gaps = 19/242 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP F+ + EF D+ ++AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RDAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDK---TIQTLGKNA 235 + F + R ++ + T+ I R + +F ++EEL H+ +Q G + Sbjct: 187 SMTFAMEGETQR--QQGEATIQRIVRQASRLRVVFA--SEEELAAHESRLDLVQKKGGSC 242 Query: 236 IW 237 +W Sbjct: 243 LW 244 >gi|160899427|ref|YP_001565009.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1] gi|160365011|gb|ABX36624.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1] Length = 238 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/173 (46%), Positives = 111/173 (64%), Gaps = 6/173 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + N DR+IE+G VE+++ T ++ GR + P+AL++HGIT Sbjct: 3 RQIILDTETTGLSADNGDRLIELGCVEMVNRKLTGNNLHLYFNA-GRDSHPDALRVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 EFLKDKP F E W++ Q AE I HNA FD+GF+N EL+ N+ P+ S +I Sbjct: 62 TEFLKDKPRFEHKVDEIWEYL--QGAELIIHNAPFDLGFLNKELELANRPPIRQCVSGVI 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 DTL +A+ P RN L+SLC R + S R+ HGALLD+ LL+DVYI + G Sbjct: 120 DTLVMAKEMFPGKRNSLDSLCDRLEVDNSGRTLHGALLDAELLADVYINLTRG 172 >gi|295096912|emb|CBK86002.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 246 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 140/241 (58%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL +KP+F+ + EF D+ + AE + HNA FD+GF++ E ++N+D Sbjct: 69 HGIADEFLLNKPTFADVADEFLDYI--RGAELVIHNASFDIGFMDYEFSKLNRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 + F + NE + ++E + R + + + EEL H+ +Q G + + Sbjct: 187 SMKFSME-NESQQTRDEGGIQRIVRQANRLRVVLA--SDEELMNHESRLDLVQKKGGSCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|260913733|ref|ZP_05920209.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella dagmatis ATCC 43325] gi|260632272|gb|EEX50447.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella dagmatis ATCC 43325] Length = 253 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 94/248 (37%), Positives = 147/248 (59%), Gaps = 21/248 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T F +++ P+ R P+A+K+ Sbjct: 9 RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPD-RPVDPDAIKV 67 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITDE L DKP+F+ I +F ++ Q AE + HNA FD+GF++ E ++N L+ S Sbjct: 68 HGITDEMLADKPTFNEIAQQFIEYI--QGAELLIHNASFDIGFMDYEFSKLNIG-LNTSE 124 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I DTL +AR+ +P RN L++LC R GI S R+ HGALLD+ +L+DVY+ M G Sbjct: 125 ICLITDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMT--GG 182 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGK----N 234 Q + ++ + ++ V + + +D K L T++EL H + I+ L K N Sbjct: 183 QTSLFDESEPEIIVATTQEEVQSAVVFSQDLKKLMP--TEDELQAHIEYIKLLNKKSKGN 240 Query: 235 AIWDRYIS 242 +W++ +S Sbjct: 241 CLWEKRLS 248 >gi|238913716|ref|ZP_04657553.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 246 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 139/242 (57%), Gaps = 19/242 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPVFADVIDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDK---TIQTLGKNA 235 + F + R ++ + T+ I R + +F ++EEL H+ +Q G + Sbjct: 187 SMTFAMEGETQR--QQGEATIQRIVRQASRLRVVFA--SEEELAAHESRLDLVQKKGGSC 242 Query: 236 IW 237 +W Sbjct: 243 LW 244 >gi|110804261|ref|YP_687782.1| DNA polymerase III subunit epsilon [Shigella flexneri 5 str. 8401] gi|110613809|gb|ABF02476.1| DNA polymerase III, epsilon subunit [Shigella flexneri 5 str. 8401] Length = 246 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 136/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L +AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 127 FCKVTDSLVVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|167995093|ref|ZP_02576183.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232195|ref|ZP_02657253.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239998|ref|ZP_02664930.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261338|ref|ZP_02683311.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465317|ref|ZP_02699199.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819164|ref|ZP_02831164.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445947|ref|YP_002039498.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449519|ref|YP_002044248.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471875|ref|ZP_03077859.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248793|ref|YP_002145264.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263319|ref|ZP_03163393.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244203|ref|YP_002214220.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389565|ref|ZP_03216176.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213419655|ref|ZP_03352721.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428417|ref|ZP_03361167.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646369|ref|ZP_03376422.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852644|ref|ZP_03382176.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828784|ref|ZP_06546543.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|194404610|gb|ACF64832.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407823|gb|ACF68042.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458239|gb|EDX47078.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195631798|gb|EDX50318.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212496|gb|ACH49893.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241574|gb|EDY24194.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938719|gb|ACH76052.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602010|gb|EDZ00556.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205327163|gb|EDZ13927.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333347|gb|EDZ20111.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339912|gb|EDZ26676.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344083|gb|EDZ30847.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349720|gb|EDZ36351.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|312911229|dbj|BAJ35203.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084513|emb|CBY94305.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224918|gb|EFX49979.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128579|gb|ADX16009.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621964|gb|EGE28309.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626623|gb|EGE32966.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 246 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 139/242 (57%), Gaps = 19/242 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDK---TIQTLGKNA 235 + F + R ++ + T+ I R + +F ++EEL H+ +Q G + Sbjct: 187 SMTFAMEGETQR--QQGEATIQRIVRQASRLRVVFA--SEEELAAHESRLDLVQKKGGSC 242 Query: 236 IW 237 +W Sbjct: 243 LW 244 >gi|94311147|ref|YP_584357.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34] gi|93354999|gb|ABF09088.1| DNA polymerase III epsilon subunit [Cupriavidus metallidurans CH34] Length = 241 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/174 (47%), Positives = 114/174 (65%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + DR+IEIG VEL++ T R ++ P R +A+ +HGI Sbjct: 1 MRQIVLDTETTGLNHATGDRLIEIGCVELVNRRLTGRHLHFYVNPE-RDIHEDAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T +FL DKP F+ I ++ DF Q+AE I HNA FD+GF++ E QR++ P S + Sbjct: 60 TLDFLADKPKFAEIVNDVRDFV--QDAELIIHNAPFDLGFLDMEFQRLDLPPFRQHASNV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL AR+ P RN L++LC R G++ SHR+ HGALLD+ LL++VY+ M G Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGVSNSHRTLHGALLDAELLAEVYLAMTRG 171 >gi|325277453|ref|ZP_08143061.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] gi|324097411|gb|EGB95649.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] Length = 252 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 129/240 (53%), Gaps = 8/240 (3%) Query: 1 MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRYVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINK 115 + +HGITD FL KP F+ + EF++F Q A + HNA FDVGFIN E Q+ Sbjct: 60 INVHGITDAFLVGKPRFADVADEFFEFI--QGATLVIHNAAFDVGFINNEFALLGQQHRA 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D ++DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M Sbjct: 118 DVSQYCTVLDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G + ++ + + + R +EL+ H + + + K+A Sbjct: 178 GGQTSLSLAGHGADAEGDGQAGGGSEIRRITGRAPGRVIMANAQELEAHAERLAAIAKSA 237 >gi|16759250|ref|NP_454867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763647|ref|NP_459262.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142975|ref|NP_806317.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414616|ref|YP_151691.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363544|ref|YP_002143181.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205351595|ref|YP_002225396.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855776|ref|YP_002242427.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|60392203|sp|P0A1G9|DPO3E_SALTY RecName: Full=DNA polymerase III subunit epsilon gi|60392204|sp|P0A1H0|DPO3E_SALTI RecName: Full=DNA polymerase III subunit epsilon gi|25299960|pir||AF0534 DNA polymerase III epsilon chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|1172157|gb|AAA86422.1| dnaQ [Salmonella enterica subsp. enterica serovar Typhimurium] gi|1794290|gb|AAC44792.1| DNA polymerase III epsilon chain [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16418764|gb|AAL19221.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501541|emb|CAD08718.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29138607|gb|AAO70177.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128873|gb|AAV78379.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095021|emb|CAR60567.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205271376|emb|CAR36169.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707579|emb|CAR31853.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245489|emb|CBG23279.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991951|gb|ACY86836.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156885|emb|CBW16361.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332987210|gb|AEF06193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 243 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 139/242 (57%), Gaps = 19/242 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDK---TIQTLGKNA 235 + F + R ++ + T+ I R + +F ++EEL H+ +Q G + Sbjct: 184 SMTFAMEGETQR--QQGEATIQRIVRQASRLRVVFA--SEEELAAHESRLDLVQKKGGSC 239 Query: 236 IW 237 +W Sbjct: 240 LW 241 >gi|260583276|ref|ZP_05851052.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127] gi|260093683|gb|EEW77595.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127] Length = 256 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 96/260 (36%), Positives = 148/260 (56%), Gaps = 29/260 (11%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P R++L++LC+R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINF---------GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 G F + +++ +E K V LK +P T +EL H + + Sbjct: 179 GQTNLFDEEESVESEVIRVMQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLEFL 233 Query: 229 QTL----GKNAIWDRYISSN 244 + + G N +W++ +N Sbjct: 234 KMMNKKSGNNCLWEKRFGNN 253 >gi|91784549|ref|YP_559755.1| DNA polymerase III subunit epsilon [Burkholderia xenovorans LB400] gi|91688503|gb|ABE31703.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] Length = 244 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 112/174 (64%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F I +F DF Q A+ I HNA FD+GF++ E + P+ I Sbjct: 60 TTEFLSDKPKFGEIADQFRDFI--QGADLIIHNAPFDIGFLDVEFALLGLPPVSTYCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171 >gi|110834086|ref|YP_692945.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2] gi|110647197|emb|CAL16673.1| DNA polymerase III, epsilon subunit [Alcanivorax borkumensis SK2] Length = 247 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 132/231 (57%), Gaps = 8/231 (3%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGL+ + R+IEIG VE+ + T + ++L P R+ AL +HGI Sbjct: 1 MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNSLHLYLNPE-REIDAGALAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122 + EFL DKP+F + EF F + AE + HNA FDVGF+N EL+R+ + Sbjct: 60 SSEFLADKPTFDKVVDEFLAFVD--GAELVIHNAPFDVGFLNHELRRLGTRYGTIEQRCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+KHP +N L++LC+RY + HR HGALLD+ +L+DVY+ M G +++ Sbjct: 118 VLDTLVMARQKHPGQKNSLDALCRRYFVENGHRELHGALLDAEILADVYLAMTGGQTRLF 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 G + +R +T+ +S R R ++ E H + + K Sbjct: 178 SGGNDSSERGGGAAAETIRRLS-ADRVPLCVVRASENEQQRHRNKLAAIAK 227 >gi|74310830|ref|YP_309249.1| DNA polymerase III subunit epsilon [Shigella sonnei Ss046] gi|82542808|ref|YP_406755.1| DNA polymerase III subunit epsilon [Shigella boydii Sb227] gi|157156660|ref|YP_001461381.1| DNA polymerase III subunit epsilon [Escherichia coli E24377A] gi|157159676|ref|YP_001456994.1| DNA polymerase III subunit epsilon [Escherichia coli HS] gi|187734104|ref|YP_001879012.1| DNA polymerase III subunit epsilon [Shigella boydii CDC 3083-94] gi|191167032|ref|ZP_03028854.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A] gi|193067693|ref|ZP_03048660.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019] gi|194427534|ref|ZP_03060082.1| DNA polymerase III, epsilon subunit [Escherichia coli B171] gi|194432694|ref|ZP_03064979.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012] gi|209917402|ref|YP_002291486.1| DNA polymerase III subunit epsilon [Escherichia coli SE11] gi|218552790|ref|YP_002385703.1| DNA polymerase III subunit epsilon [Escherichia coli IAI1] gi|218693677|ref|YP_002401344.1| DNA polymerase III subunit epsilon [Escherichia coli 55989] gi|260842441|ref|YP_003220219.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2 str. 12009] gi|260853420|ref|YP_003227311.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11 str. 11368] gi|260866358|ref|YP_003232760.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H- str. 11128] gi|293418309|ref|ZP_06660744.1| DNA polymerase III [Escherichia coli B088] gi|332281343|ref|ZP_08393756.1| DNA polymerase III epsilon subunit [Shigella sp. D9] gi|73854307|gb|AAZ87014.1| DNA polymerase III epsilon subunit [Shigella sonnei Ss046] gi|81244219|gb|ABB64927.1| DNA polymerase III epsilon subunit [Shigella boydii Sb227] gi|157065356|gb|ABV04611.1| DNA polymerase III, epsilon subunit [Escherichia coli HS] gi|157078690|gb|ABV18398.1| DNA polymerase III, epsilon subunit [Escherichia coli E24377A] gi|187431096|gb|ACD10370.1| DNA polymerase III, epsilon subunit [Shigella boydii CDC 3083-94] gi|190902925|gb|EDV62652.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A] gi|192959105|gb|EDV89541.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019] gi|194414304|gb|EDX30578.1| DNA polymerase III, epsilon subunit [Escherichia coli B171] gi|194418956|gb|EDX35040.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012] gi|209910661|dbj|BAG75735.1| DNA polymerase III epsilon subunit [Escherichia coli SE11] gi|218350409|emb|CAU96094.1| DNA polymerase III epsilon subunit [Escherichia coli 55989] gi|218359558|emb|CAQ97098.1| DNA polymerase III epsilon subunit [Escherichia coli IAI1] gi|257752069|dbj|BAI23571.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11 str. 11368] gi|257757588|dbj|BAI29085.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2 str. 12009] gi|257762714|dbj|BAI34209.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H- str. 11128] gi|291324837|gb|EFE64252.1| DNA polymerase III [Escherichia coli B088] gi|320186397|gb|EFW61129.1| DNA polymerase III epsilon subunit [Shigella flexneri CDC 796-83] gi|320201190|gb|EFW75773.1| DNA polymerase III epsilon subunit [Escherichia coli EC4100B] gi|323160256|gb|EFZ46213.1| DNA polymerase III, epsilon subunit [Escherichia coli E128010] gi|323165914|gb|EFZ51696.1| DNA polymerase III, epsilon subunit [Shigella sonnei 53G] gi|323171002|gb|EFZ56651.1| DNA polymerase III, epsilon subunit [Escherichia coli LT-68] gi|323176527|gb|EFZ62119.1| DNA polymerase III, epsilon subunit [Escherichia coli 1180] gi|323181627|gb|EFZ67042.1| DNA polymerase III, epsilon subunit [Escherichia coli 1357] gi|324115459|gb|EGC09401.1| DNA polymerase III [Escherichia coli E1167] gi|332093741|gb|EGI98796.1| DNA polymerase III, epsilon subunit [Shigella boydii 3594-74] gi|332095033|gb|EGJ00068.1| DNA polymerase III, epsilon subunit [Shigella boydii 5216-82] gi|332097572|gb|EGJ02551.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 155-74] gi|332103695|gb|EGJ07041.1| DNA polymerase III epsilon subunit [Shigella sp. D9] Length = 243 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ + + G + + Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVEKKGGSCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|323938758|gb|EGB35004.1| DNA polymerase III [Escherichia coli E1520] Length = 246 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 136/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIG VE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGGVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|238893208|ref|YP_002917942.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae NTUH-K2044] gi|238545524|dbj|BAH61875.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 246 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 137/243 (56%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++N+ Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNASFDIGFMDYEFSKLNRGIGKTET 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234 + F + + E ++ V S L+ + EEL H+ +Q G + Sbjct: 187 SMAFSMEGESQQQAGEMGIQRVVRAGSQLR-----VVYASDEELANHESRLDLVQKKGGS 241 Query: 235 AIW 237 +W Sbjct: 242 CLW 244 >gi|167856497|ref|ZP_02479211.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755] gi|167852377|gb|EDS23677.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755] Length = 256 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 95/262 (36%), Positives = 149/262 (56%), Gaps = 31/262 (11%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M ++ +R++V D ETTG++ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSKQQILRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKP-PREV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+++HGIT+E L DKP+F+ I EF +F + AE I HNA FDVGFI+ E + Sbjct: 60 EAEAMQVHGITNEMLADKPAFAEIADEFIEFI--KGAELIIHNAPFDVGFIDHEFSFLPN 117 Query: 116 DPLDPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P ++ + D+L +AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPEKVAQMCTVTDSLQLARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNE-------DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 MM GG G +E ++ ++ N+ +L D ++EL EH Sbjct: 178 -MMTGGQIALIGEDEHEQAKTSSVEQVYQPLNIDTSNLIVLAPD--------EKELAEHL 228 Query: 226 KTIQTLGK----NAIWDRYISS 243 K ++ + K N +W R +++ Sbjct: 229 KYLELINKKSKGNCLWTRELAT 250 >gi|193063208|ref|ZP_03044299.1| DNA polymerase III, epsilon subunit [Escherichia coli E22] gi|256020181|ref|ZP_05434046.1| DNA polymerase III subunit epsilon [Shigella sp. D9] gi|300819828|ref|ZP_07100014.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1] gi|300823399|ref|ZP_07103529.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7] gi|300926565|ref|ZP_07142351.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1] gi|301326098|ref|ZP_07219494.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1] gi|307314695|ref|ZP_07594293.1| DNA polymerase III, epsilon subunit [Escherichia coli W] gi|309797929|ref|ZP_07692309.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7] gi|331666456|ref|ZP_08367336.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271] gi|331675873|ref|ZP_08376590.1| DNA polymerase III, epsilon subunit [Escherichia coli H591] gi|192931116|gb|EDV83719.1| DNA polymerase III, epsilon subunit [Escherichia coli E22] gi|300417423|gb|EFK00734.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1] gi|300524017|gb|EFK45086.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7] gi|300527586|gb|EFK48648.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1] gi|300847158|gb|EFK74918.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1] gi|306905814|gb|EFN36339.1| DNA polymerase III, epsilon subunit [Escherichia coli W] gi|308118469|gb|EFO55731.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7] gi|315059428|gb|ADT73755.1| DNA polymerase III, epsilon subunit [Escherichia coli W] gi|320173695|gb|EFW48884.1| DNA polymerase III epsilon subunit [Shigella dysenteriae CDC 74-1112] gi|320179852|gb|EFW54798.1| DNA polymerase III epsilon subunit [Shigella boydii ATCC 9905] gi|323380013|gb|ADX52281.1| DNA polymerase III, epsilon subunit [Escherichia coli KO11] gi|323945583|gb|EGB41633.1| DNA polymerase III [Escherichia coli H120] gi|324020673|gb|EGB89892.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 117-3] gi|331066301|gb|EGI38179.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271] gi|331076433|gb|EGI47710.1| DNA polymerase III, epsilon subunit [Escherichia coli H591] Length = 246 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ + + G + + Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVEKKGGSCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|33151469|ref|NP_872822.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP] gi|33147689|gb|AAP95211.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP] Length = 256 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 141/249 (56%), Gaps = 27/249 (10%) Query: 7 MRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R++V D ETTG++ IIEIGAVEL++ T RTF V++ P R+ EA+K Sbjct: 7 IRQVVLDTETTGMNFNGPPQIGHNIIEIGAVELINRRLTGRTFHVYIKPP-REVEEEAIK 65 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---L 118 +HGIT+ FL+DKP+F+ I EF F Q AE I HNA FDV FI+ E + P Sbjct: 66 VHGITNAFLQDKPTFAEIAHEFLAFI--QGAELIIHNAPFDVAFIDQEFSSLVNPPSKTA 123 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + + DTL +AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ MM GG Sbjct: 124 EMCTVTDTLQMARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGG 182 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK-----PLFTRITKEELDEHDKTIQTLGK 233 T E+ ++++ SL ++ + ++++EE H + + L K Sbjct: 183 ---QLALLTEEEHSHTQQQR---ETSLAVKEHFDTSGLIVLQLSQEECQAHQEYLALLDK 236 Query: 234 ----NAIWD 238 N +W+ Sbjct: 237 KSKGNCLWN 245 >gi|296158207|ref|ZP_06841039.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] gi|295891543|gb|EFG71329.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] Length = 244 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 112/174 (64%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F I +F DF Q A+ I HNA FD+GF++ E + P+ I Sbjct: 60 TTEFLSDKPKFGEIADQFRDFI--QGADLIIHNAPFDIGFLDVEFALLGLPPVSTYCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171 >gi|323157950|gb|EFZ44052.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa14] Length = 246 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 135/236 (57%), Gaps = 14/236 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 Q + F + ++ + T+ I + + K T EEL H+ + + K A Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVEKKA 236 >gi|288937007|ref|YP_003441066.1| DNA polymerase III subunit epsilon [Klebsiella variicola At-22] gi|288891716|gb|ADC60034.1| DNA polymerase III, epsilon subunit [Klebsiella variicola At-22] Length = 246 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 137/243 (56%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++N+ Sbjct: 69 HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFGKLNRGIGKTET 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234 + F + + E ++ V S L+ + EEL H+ +Q G + Sbjct: 187 SMAFSMEGESQQQAGEMGIQRVVRAASQLR-----VVYASDEELVNHESRLDLVQKKGGS 241 Query: 235 AIW 237 +W Sbjct: 242 CLW 244 >gi|188494951|ref|ZP_03002221.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638] gi|194438247|ref|ZP_03070339.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1] gi|254160329|ref|YP_003043437.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606] gi|312970313|ref|ZP_07784494.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70] gi|188490150|gb|EDU65253.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638] gi|194422911|gb|EDX38906.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1] gi|242376045|emb|CAQ30730.1| DNA polymerase III, epsilon subunit, subunit of DNA polymerase III, core enzyme and DNA polymerase III, holoenzyme [Escherichia coli BL21(DE3)] gi|253972230|gb|ACT37901.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606] gi|253976439|gb|ACT42109.1| DNA polymerase III subunit epsilon [Escherichia coli BL21(DE3)] gi|309700417|emb|CBI99706.1| DNA polymerase III epsilon subunit [Escherichia coli ETEC H10407] gi|310336962|gb|EFQ02100.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70] Length = 243 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T +EL H+ +Q G + + Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDDELAAHEARLDLVQKKGGSCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|170695448|ref|ZP_02886593.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] gi|170139639|gb|EDT07822.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] Length = 247 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 113/174 (64%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ I + DF Q A+ I HNA FD+GF++AE + P+ I Sbjct: 60 TTEFLSDKPKFADIADQIRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG 171 >gi|168238647|ref|ZP_02663705.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736138|ref|YP_002113281.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204927010|ref|ZP_03218212.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194711640|gb|ACF90861.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288607|gb|EDY27984.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323675|gb|EDZ08870.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322614544|gb|EFY11473.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620062|gb|EFY16934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623357|gb|EFY20196.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629345|gb|EFY26124.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632065|gb|EFY28819.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637197|gb|EFY33899.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640310|gb|EFY36970.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645923|gb|EFY42443.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652378|gb|EFY48732.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652582|gb|EFY48932.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660392|gb|EFY56628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664545|gb|EFY60738.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669402|gb|EFY65552.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670948|gb|EFY67081.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678813|gb|EFY74868.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681842|gb|EFY77867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687968|gb|EFY83934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194322|gb|EFZ79517.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197738|gb|EFZ82870.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203466|gb|EFZ88491.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206789|gb|EFZ91742.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213392|gb|EFZ98193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214685|gb|EFZ99436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221462|gb|EGA05878.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226220|gb|EGA10436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229992|gb|EGA14112.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233731|gb|EGA17820.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238575|gb|EGA22633.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244263|gb|EGA28272.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246424|gb|EGA30407.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252193|gb|EGA36046.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258046|gb|EGA41725.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323265129|gb|EGA48628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272692|gb|EGA56099.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 246 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 138/243 (56%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234 + F + R EE ++ V S R + +F + EEL H+ +Q G + Sbjct: 187 SMTFAMEGETQRQQGEETIQRIVRQAS---RLRVVFA--SDEELAAHESRLDLVQKKGGS 241 Query: 235 AIW 237 +W Sbjct: 242 CLW 244 >gi|156935271|ref|YP_001439187.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ATCC BAA-894] gi|156533525|gb|ABU78351.1| hypothetical protein ESA_03124 [Cronobacter sakazakii ATCC BAA-894] Length = 243 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 138/243 (56%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFMV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL +KP F + +F D+ + AE + HNA FD+GF++ E +N+ P + Sbjct: 66 HGISDEFLMNKPVFGDVVDDFLDYI--RGAELVIHNASFDIGFMDYEFGMLNRGIPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234 I F + + + + ++ V S LK R EEL H+ +Q G + Sbjct: 184 SIAFAMEGDGQQQQGDTGIQRVVRQASRLK-----VVRACDEELAAHESRLDLVQKKGGS 238 Query: 235 AIW 237 +W Sbjct: 239 CLW 241 >gi|170021437|ref|YP_001726391.1| DNA polymerase III subunit epsilon [Escherichia coli ATCC 8739] gi|253774763|ref|YP_003037594.1| DNA polymerase III subunit epsilon [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|297518674|ref|ZP_06937060.1| DNA polymerase III subunit epsilon [Escherichia coli OP50] gi|300905642|ref|ZP_07123388.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1] gi|300919145|ref|ZP_07135678.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1] gi|300927906|ref|ZP_07143466.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1] gi|301305771|ref|ZP_07211857.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1] gi|169756365|gb|ACA79064.1| DNA polymerase III, epsilon subunit [Escherichia coli ATCC 8739] gi|253325807|gb|ACT30409.1| DNA polymerase III, epsilon subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300402534|gb|EFJ86072.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1] gi|300413743|gb|EFJ97053.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1] gi|300464061|gb|EFK27554.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1] gi|300838946|gb|EFK66706.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1] gi|315253528|gb|EFU33496.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 85-1] gi|323963578|gb|EGB59135.1| DNA polymerase III [Escherichia coli H489] gi|323972507|gb|EGB67713.1| DNA polymerase III [Escherichia coli TA007] Length = 246 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T +EL H+ +Q G + + Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDDELAAHEARLDLVQKKGGSCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|15601971|ref|NP_245043.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp. multocida str. Pm70] gi|31563219|sp|Q9CPE0|DPO3E_PASMU RecName: Full=DNA polymerase III subunit epsilon gi|12720318|gb|AAK02190.1| DnaQ [Pasteurella multocida subsp. multocida str. Pm70] Length = 253 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 96/253 (37%), Positives = 144/253 (56%), Gaps = 31/253 (12%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T F +++ PN R P+A+K+ Sbjct: 9 RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPN-RPVDPDAIKV 67 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPL 118 HGITDE L DKP F+ + +F D+ Q AE + HNA FDVGF++ E ++ IN D + Sbjct: 68 HGITDEMLADKPMFNEVAQQFIDYI--QGAELLIHNAPFDVGFMDYEFKKLNLNINTDAI 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + DTL +AR+ +P RN L++LC R GI S R+ HGALLD+ +L+DVY+ M G Sbjct: 126 --CMVTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQ 183 Query: 179 SQINFGFKTNEDRF----FKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGK 233 + + F NE +E+ ++ S LKR +P +EL H + L K Sbjct: 184 TSL---FDENEPEIAVVAVQEQIQSAVAFSQDLKRLQP-----NADELQAHLDYLLLLNK 235 Query: 234 ----NAIWDRYIS 242 N +W++ ++ Sbjct: 236 KSKGNCLWEKRLA 248 >gi|262044050|ref|ZP_06017130.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330005755|ref|ZP_08305367.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3] gi|259038622|gb|EEW39813.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536123|gb|EGF62511.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3] Length = 246 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 137/243 (56%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++N+ Sbjct: 69 HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFSKLNRGIGKTET 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234 + F + + E ++ V S L+ + EEL H+ +Q G + Sbjct: 187 SMAFSMEGESQQQAGEMGIQRVVRAGSQLR-----VVYASDEELANHESRLDLVQKKGGS 241 Query: 235 AIW 237 +W Sbjct: 242 CLW 244 >gi|152968805|ref|YP_001333914.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953654|gb|ABR75684.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 243 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 137/243 (56%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++N+ Sbjct: 66 HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFSKLNRGIGKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234 + F + + E ++ V S L+ + EEL H+ +Q G + Sbjct: 184 SMAFSMEGESQQQAGEMGIQRVVRAGSQLR-----VVYASDEELANHESRLDLVQKKGGS 238 Query: 235 AIW 237 +W Sbjct: 239 CLW 241 >gi|323259856|gb|EGA43487.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] Length = 243 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 138/243 (56%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234 + F + R EE ++ V S R + +F + EEL H+ +Q G + Sbjct: 184 SMTFAMEGETQRQQGEETIQRIVRQAS---RLRVVFA--SDEELAAHESRLDLVQKKGGS 238 Query: 235 AIW 237 +W Sbjct: 239 CLW 241 >gi|327254934|gb|EGE66544.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_7v] Length = 243 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF ++ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 182 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|296101380|ref|YP_003611526.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055839|gb|ADF60577.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 243 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 138/241 (57%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++ +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFLDYI--KGAELVIHNASFDIGFMDYEFSKLQRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 + F + NE + + E + R + + + EEL H+ +Q G + + Sbjct: 184 SMKFSME-NESQQTQGEAGIQRVVRQASRLRVVLA--SDEELLNHESRLDLVQKKGGSCM 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|206577790|ref|YP_002240302.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342] gi|290509928|ref|ZP_06549298.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55] gi|206566848|gb|ACI08624.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342] gi|289776644|gb|EFD84642.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55] Length = 243 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 137/243 (56%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++N+ Sbjct: 66 HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFGKLNRGIGKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234 + F + + E ++ V S L+ + EEL H+ +Q G + Sbjct: 184 SMAFSMEGESQQQAGEMGIQRVVRAASQLR-----VVYASDEELVNHESRLDLVQKKGGS 238 Query: 235 AIW 237 +W Sbjct: 239 CLW 241 >gi|323963754|gb|EGB59256.1| DNA polymerase III [Escherichia coli M863] Length = 246 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF ++ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|238921062|ref|YP_002934577.1| DNA polymerase III subunit epsilon [Edwardsiella ictaluri 93-146] gi|238870631|gb|ACR70342.1| DNA polymerase III, epsilon subunit, putative [Edwardsiella ictaluri 93-146] Length = 243 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 94/242 (38%), Positives = 139/242 (57%), Gaps = 19/242 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFTV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+D+FL DKPSF+ + EF F + AE + HNA FD+GF++ E ++ +D P + Sbjct: 66 HGISDDFLLDKPSFAEVADEFLAFI--RGAELVIHNAPFDIGFMDYEFAKLGRDLPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHDK---TIQTLGKNA 235 Q F ++ D + + + + ++ K L E EL H++ +Q G + Sbjct: 182 QTLLAFSSDGDGASQSQASEIRRV--VRGAKGLRVVYASEVELAAHEQRLDLVQKKGDSC 239 Query: 236 IW 237 +W Sbjct: 240 LW 241 >gi|323975918|gb|EGB71013.1| DNA polymerase III [Escherichia coli TW10509] Length = 243 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF ++ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 182 QTSMAFAMEGETQQQQGETTIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 W 237 W Sbjct: 241 W 241 >gi|297538708|ref|YP_003674477.1| DNA polymerase III subunit epsilon [Methylotenera sp. 301] gi|297258055|gb|ADI29900.1| DNA polymerase III, epsilon subunit [Methylotenera sp. 301] Length = 235 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 91/240 (37%), Positives = 140/240 (58%), Gaps = 18/240 (7%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL ++ R+IE+ AVE+++ T + F +L P+ R+ A ++HGI Sbjct: 1 MRQIFLDTETTGLYHAQGHRVIEVAAVEVINRRLTKQHFHYYLNPD-REIDQGAQEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 + EFL+DKP F+ I +E F ++E I HNA FDVGF+N E I + P++ ++I Sbjct: 60 SLEFLQDKPHFADIANELIAFI--ADSELIMHNAPFDVGFLNREFGLIEQKPVEAITAKI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL IA+ P RN L++LCK YGI S R+ HGALLD+ LL+DVY+ M G + Sbjct: 118 TDTLKIAKEMRPGQRNSLDALCKHYGIDNSKRTLHGALLDAELLADVYMAMTRGQDSLMM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHDKTIQTLGK--NAIWDRY 240 K ++K I +K +P+ ++ + E+ HD+ I +L K + +W ++ Sbjct: 178 ELD-------KPQQKNSDAIQEIK--QPVLVKLANQAEISAHDEYIASLAKSSDCLWAKF 228 >gi|309782421|ref|ZP_07677145.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA] gi|308918758|gb|EFP64431.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA] Length = 242 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 112/174 (64%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL++ DR+IEIG VE+++ T R ++ P R+ A+ +HGI Sbjct: 1 MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T+EF+ DKP F+ I +E D+ Q AE I HNA FD+GF++ E QR+ P S Sbjct: 60 TNEFVADKPKFAEIVNEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGH 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL AR+ P RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M G Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRG 171 >gi|68248745|ref|YP_247857.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 86-028NP] gi|68056944|gb|AAX87197.1| DNA polymerase III, epsilon chain [Haemophilus influenzae 86-028NP] Length = 255 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 98/259 (37%), Positives = 148/259 (57%), Gaps = 28/259 (10%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R P+A Sbjct: 3 NPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL- 118 +K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N + Sbjct: 62 IKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNLNVKT 119 Query: 119 -DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ + RN+L++LC+R GI S R+ HGALLD+ +L+DVY+ MM G Sbjct: 120 DDICLVTDTLQMARQMYLGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYL-MMTG 178 Query: 178 GSQINFGFKTNEDRFF-------KEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQ 229 G F ++ E EE K+ + S LK +P T +EL H + ++ Sbjct: 179 GQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSHNLKLLQP-----TNDELQAHLEFLK 233 Query: 230 TL----GKNAIWDRYISSN 244 + G N +W++ +N Sbjct: 234 MMNKKSGNNCLWEKRFGNN 252 >gi|241663345|ref|YP_002981705.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D] gi|240865372|gb|ACS63033.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12D] Length = 242 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 112/174 (64%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL++ DR+IEIG VE+++ T R ++ P R+ A+ +HGI Sbjct: 1 MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T+EF+ DKP F+ I +E D+ Q AE I HNA FD+GF++ E QR+ P S Sbjct: 60 TNEFVADKPKFAEIVNEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGH 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL AR+ P RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M G Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRG 171 >gi|310766705|gb|ADP11655.1| DNA polymerase III subunit epsilon [Erwinia sp. Ejp617] Length = 252 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 142/245 (57%), Gaps = 19/245 (7%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R PEA Sbjct: 5 NTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLIDPEA 63 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN---AELQRINKD 116 +HGI DEFL DKP+F+ I +F + N AE + HNA FD+GF++ A+LQR Sbjct: 64 FGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQRGIAK 121 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +I D+L++AR+ P RN L++LC RY I S R+ HGALLDS +L++V++ M Sbjct: 122 TETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFLTMT- 180 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTL---G 232 G Q + F +R +++ +T+ I+ + L R +++EL H+ + + G Sbjct: 181 -GGQTSLAFSMEGEREKQQDGETIHRIA--RPSSGLRVVRASEQELMAHEARLDLVEKKG 237 Query: 233 KNAIW 237 + +W Sbjct: 238 GSCLW 242 >gi|238755084|ref|ZP_04616431.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473] gi|238706644|gb|EEP99014.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473] Length = 254 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 94/245 (38%), Positives = 141/245 (57%), Gaps = 25/245 (10%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-----NKDP 117 HGI+DEFL DKP+F+ I EF +F + AE + HNA FD+GF+ E + + N D Sbjct: 66 HGISDEFLLDKPTFADIAPEFIEFI--RGAELVIHNATFDIGFMYYEFRMLQQAIPNTDT 123 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +LS+VY+ M G Sbjct: 124 F--CTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILSEVYLAMTGG 181 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK--EELDEHDK---TIQTLG 232 + ++F + +++ + + +I + R T I EELD H + +Q G Sbjct: 182 QTSLSFSMEGDQN-----QSDSAADIQRIVRPTSGLTIIYANDEELDAHHQRLDLVQKKG 236 Query: 233 KNAIW 237 + +W Sbjct: 237 GSCLW 241 >gi|56460794|ref|YP_156075.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR] gi|56179804|gb|AAV82526.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR] Length = 235 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 91/240 (37%), Positives = 136/240 (56%), Gaps = 17/240 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG+D +K RIIEIG VEL++ T F V++ P R EA+++HGI Sbjct: 1 MRQVVLDTETTGIDPAKGHRIIEIGCVELINRKLTGNHFHVYINPE-RVVEQEAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122 T++FL DKP F+ + +F +F + ++ + HNA FDVGF++AE RI D Sbjct: 60 TNDFLTDKPVFAQVVQDFIEFI--KGSQLVIHNAPFDVGFMDAEFSRIRPAVGLTNDFCS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR P RN L++LC+ Y + S R HGALLD+ +L+DVY+ M G + +N Sbjct: 118 VLDTLQLAREMRPGQRNSLDALCRAYDVDNSARELHGALLDAEILADVYLMMTGGQTALN 177 Query: 183 FG--FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIW 237 K N+ K E + + N LK R T +E H + + + G + +W Sbjct: 178 LASHGKDNQGGSQKVEHQRITNRPALK-----VLRATADEEALHQERLARVKEEGGHCLW 232 >gi|223041838|ref|ZP_03612026.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202] gi|223017331|gb|EEF15754.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202] Length = 255 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 144/259 (55%), Gaps = 33/259 (12%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M+ + R++V D ETTG++ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MLEQEIHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKPSF+ I EF F + AE + HNA FDVGF++ E + Sbjct: 60 EEEAIKVHGITNEFLQDKPSFAEIVDEFVAFI--KGAELVIHNAPFDVGFMDHEFSFLAN 117 Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCTVTDSLALARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR--------DKPLFTRITKEELDEH 224 MM GG QI +EE P + LL+ + + + EL+ H Sbjct: 178 -MMTGG-QIAL--------LAEEEHDENPQVDLLEEGPKIAFDTSNSVILKADESELEAH 227 Query: 225 DKTIQTLGK----NAIWDR 239 ++ L K N IW + Sbjct: 228 QLFLKLLYKKSKQNCIWGK 246 >gi|261346344|ref|ZP_05973988.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM 4541] gi|282565658|gb|EFB71193.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM 4541] Length = 253 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 22/244 (9%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS- 121 HGI+DEFL+DKP F+ I EF +F + AE I HNA FD+GF++ E +++N+ + P+ Sbjct: 66 HGISDEFLQDKPVFAEIADEFIEFI--RGAELIIHNAPFDIGFMDYEFRKLNRG-IPPTA 122 Query: 122 ---RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G Sbjct: 123 EFCSITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMT--G 180 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTL----GK 233 Q + F + D ++ + I K L+ + +E+ EH+ + + GK Sbjct: 181 GQTSLAFSMDSDSKNIQQANEIQRIQRPASGLKVLYA--SDQEIAEHEARLDIVDKKGGK 238 Query: 234 NAIW 237 +W Sbjct: 239 PCLW 242 >gi|331661586|ref|ZP_08362509.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143] gi|284919985|emb|CBG33040.1| DNA polymerase III epsilon subunit [Escherichia coli 042] gi|331060008|gb|EGI31972.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143] Length = 246 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 136/241 (56%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPE-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF ++ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT--GG 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKNAI 236 Q + F + ++ + T+ I + + K T EEL H+ +Q G + + Sbjct: 185 QTSMAFAMEGETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 W 237 W Sbjct: 244 W 244 >gi|312795584|ref|YP_004028506.1| DNA polymerase III, epsilon chain [Burkholderia rhizoxinica HKI 454] gi|312167359|emb|CBW74362.1| DNA polymerase III, epsilon chain (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 247 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 111/174 (63%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTGL++K DRIIEIG VE+++ T ++ P R + P AL +HG+ Sbjct: 1 MRLLVLDTETTGLNAKGGDRIIEIGCVEIVNRQLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL+DKP F+ I DF ++A+ I HNA FD+GF+NAE + P + Sbjct: 60 TTEFLRDKPKFAEIADALRDFV--KDADIIIHNAPFDIGFLNAEFAMLGLPPFCDHCGEV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL A+ P RN L++LC+R+GI+ +HR+ HGALLD+ LL+DVY+ M G Sbjct: 118 IDTLVQAKAMFPGKRNSLDALCERFGISNAHRTLHGALLDAELLADVYLAMTRG 171 >gi|242240256|ref|YP_002988437.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech703] gi|242132313|gb|ACS86615.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech703] Length = 244 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 81/191 (42%), Positives = 125/191 (65%), Gaps = 13/191 (6%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ + RIIEIGAVE+++ T R + V+L P+ R PEA ++ Sbjct: 7 RQVVLDTETTGMNRLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYLKPD-RLVDPEAFQI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL D+P+++ I EF +F + AE + HNA FD+GF++ E + +N+D P + Sbjct: 66 HGISDEFLIDRPAYADIVDEFIEFI--RGAELVIHNASFDIGFMDYEFRMLNRDIPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++ARR P RN+L+ LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCKITDSLAMARRLFPGKRNNLDVLCTRYQIDNSKRTLHGALLDAEILAEVYLAMT--GG 181 Query: 180 QINFGFKTNED 190 Q + F ++ + Sbjct: 182 QTSLAFSSDSE 192 >gi|68172041|ref|ZP_00545326.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Ehrlichia chaffeensis str. Sapulpa] gi|67998534|gb|EAM85303.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Ehrlichia chaffeensis str. Sapulpa] Length = 239 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 92/234 (39%), Positives = 137/234 (58%), Gaps = 11/234 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R++V D ETTGLD DR+IEIG VEL+D T + F ++ P R A K+HGI Sbjct: 7 VREVVLDTETTGLDPDGGDRVIEIGCVELIDRVFTGKVFHEYINPE-RDIPYYATKIHGI 65 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + LKDKP FS I +F +F + N + HNA FD+ FI EL RINK +++D Sbjct: 66 TIDMLKDKPKFSEIADKFLEFID--NGILVIHNAGFDIKFIKMELDRINKSYNSDFQVVD 123 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR+K P + L++LC+R+ I++ R HGALLD+ LL VY+++M GG Q + F Sbjct: 124 TLVLARKKFPGVSSTLDALCRRFNISLQDRKFHGALLDATLLGKVYVQLM-GGLQRSLEF 182 Query: 186 KTNEDRFFKEE-KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 N + K N+ + +P +++EE+ +H ++ + KN IW+ Sbjct: 183 SYNNNVSSASNIDKRCENLCI----EPRIYEVSEEEIKKHKMLLEKI-KNPIWN 231 >gi|209364170|ref|YP_001425094.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway 5J108-111] gi|212213173|ref|YP_002304109.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212] gi|212218153|ref|YP_002304940.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154] gi|215918940|ref|NP_819360.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493] gi|206583825|gb|AAO89874.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493] gi|207082103|gb|ABS77173.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway 5J108-111] gi|212011583|gb|ACJ18964.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212] gi|212012415|gb|ACJ19795.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154] Length = 236 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 96/241 (39%), Positives = 136/241 (56%), Gaps = 16/241 (6%) Query: 5 NKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N MR+IV D ETTGL + RIIEIGA+E+++ T ++ P R +A+++H Sbjct: 3 NLMRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPE-RSIERDAIEIH 61 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDP 120 GITD FL DKP F I +E F + AE I HNA FDVGF+N EL+ K Sbjct: 62 GITDSFLIDKPLFKDIATELISFL--KGAELIIHNAPFDVGFLNHELKLTGQSFKTLTHY 119 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +++DTL+IAR+KHP N+L++LC+RY + S+R HGALLD+ LL+ VY+ +M GG Sbjct: 120 CQVLDTLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYL-LMTGGQT 178 Query: 181 INFGFKTNEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGKNA--IW 237 + F E + F ++V L RD R E + H +Q L +N +W Sbjct: 179 VLF-----EQQGFAVASRSVSVRPLGTDRDSLSVIRANAAETEAHRAFLQLLTENGLCLW 233 Query: 238 D 238 + Sbjct: 234 N 234 >gi|238794443|ref|ZP_04638053.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909] gi|238726238|gb|EEQ17782.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909] Length = 259 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 82/192 (42%), Positives = 124/192 (64%), Gaps = 11/192 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+F+ I EF DF + AE + HNA FD+GF++ E + + +D P + Sbjct: 71 HGISDEFLADKPTFADITPEFLDFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 128 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188 Query: 180 QINFGFKTNEDR 191 ++F + ++ + Sbjct: 189 SLSFSMEGDQSQ 200 >gi|219871037|ref|YP_002475412.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165] gi|219691241|gb|ACL32464.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165] Length = 256 Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 95/262 (36%), Positives = 148/262 (56%), Gaps = 31/262 (11%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG++ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQQILRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+++HGIT+E L DKP+F+ I EF +F + AE I HNA FDVGFI+ E + Sbjct: 60 DAEAMQVHGITNEMLADKPAFAEIADEFIEFI--KGAELIIHNAPFDVGFIDHEFSFLPN 117 Query: 116 DPLDPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P ++ + D+L +AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPEKVAQMCTVTDSLQLARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNE-------DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD 225 MM GG G +E ++ ++ N+ +L D ++EL EH Sbjct: 178 -MMTGGQIALIGEDEHEQVKTSSAEQVYQPLTIDTSNLIVLAPD--------EKELAEHL 228 Query: 226 KTIQTLGK----NAIWDRYISS 243 K ++ + K N +W R +++ Sbjct: 229 KYLELINKKSKGNCLWTRELAT 250 >gi|295698439|ref|YP_003603094.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola USDA] gi|291157346|gb|ADD79791.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola USDA] Length = 249 Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 90/186 (48%), Positives = 116/186 (62%), Gaps = 13/186 (6%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 RKI+ D ETTG+ S + IIEIGAVE+++ T F V++ P R P+A ++ Sbjct: 7 RKIILDTETTGMSSSGHPYEGHNIIEIGAVEMINRELTGNLFHVYINPK-RSVDPKAFEI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 H I+D FLKDKP+FS I +F DF +N+E I HNA FDVGFIN EL RI Sbjct: 66 HKISDNFLKDKPTFSEIVDDFVDFI--RNSELIIHNASFDVGFINHELSRIEYSFCSIKK 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 RI DTL IAR P +N L++LC RY I S RS H A+LD+ +LS++Y K+M GG Sbjct: 124 ICRITDTLKIARSLFPGKKNSLDALCDRYHIDRSKRSVHSAILDAKILSEIY-KLMTGG- 181 Query: 180 QINFGF 185 QI+F F Sbjct: 182 QISFNF 187 >gi|296135837|ref|YP_003643079.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] gi|295795959|gb|ADG30749.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] Length = 239 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 123/192 (64%), Gaps = 14/192 (7%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL+ + DRIIE+ VEL + T + + +L P+ R + P+ALK+HG+T Sbjct: 3 RQIVLDTETTGLNPASGDRIIEVAGVELFNRRLTGKHYHAYLNPD-RASHPDALKVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD------PLDP 120 +EFL DKP F I + +F ++AE I HNA FD F++AEL+R+N+ PL Sbjct: 62 EEFLSDKPRFEQIADDLLEFV--RDAEVIIHNAPFDCAFLDAELERLNRPAFRQHVPL-- 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + DTL++A+ + P N+L++LCKR+GI +HR+ HGALLD+ LL++VY+ + G Sbjct: 118 --VTDTLAMAKLQFPGKFNNLDALCKRFGIDNTHRTLHGALLDAELLAEVYLSLTRGQES 175 Query: 181 INFGFKTNEDRF 192 + +T + + Sbjct: 176 LVIDLETPQQQM 187 >gi|311280820|ref|YP_003943051.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1] gi|308750015|gb|ADO49767.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1] Length = 246 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 137/243 (56%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFNV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF ++ + AE + HNA FD+GF++ E ++N+ Sbjct: 69 HGIADEFLLDKPTFADVCDEFLEYI--RGAELVIHNASFDIGFMDYEFSKLNRGIAKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234 + F + + E ++ V S L+ + EEL H+ +Q G + Sbjct: 187 SMAFAMEGEAQQTQGEAGIQRVVRAASKLR-----VVLASDEELMAHESRLDLVQKKGGS 241 Query: 235 AIW 237 +W Sbjct: 242 CLW 244 >gi|22126970|ref|NP_670393.1| DNA polymerase III subunit epsilon [Yersinia pestis KIM 10] gi|45442535|ref|NP_994074.1| DNA polymerase III subunit epsilon [Yersinia pestis biovar Microtus str. 91001] gi|51597279|ref|YP_071470.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP 32953] gi|108806557|ref|YP_650473.1| DNA polymerase III subunit epsilon [Yersinia pestis Antiqua] gi|108813076|ref|YP_648843.1| DNA polymerase III subunit epsilon [Yersinia pestis Nepal516] gi|145598912|ref|YP_001162988.1| DNA polymerase III subunit epsilon [Yersinia pestis Pestoides F] gi|149366915|ref|ZP_01888949.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125] gi|153948473|ref|YP_001400036.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP 31758] gi|162419464|ref|YP_001607083.1| DNA polymerase III subunit epsilon [Yersinia pestis Angola] gi|165924368|ref|ZP_02220200.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938341|ref|ZP_02226899.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166011939|ref|ZP_02232837.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211805|ref|ZP_02237840.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399939|ref|ZP_02305457.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419869|ref|ZP_02311622.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424264|ref|ZP_02316017.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023355|ref|YP_001719860.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis YPIII] gi|186896384|ref|YP_001873496.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis PB1/+] gi|218928251|ref|YP_002346126.1| DNA polymerase III subunit epsilon [Yersinia pestis CO92] gi|229841013|ref|ZP_04461172.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843118|ref|ZP_04463264.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229895464|ref|ZP_04510636.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A] gi|229903519|ref|ZP_04518632.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516] gi|270487300|ref|ZP_06204374.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27] gi|294503098|ref|YP_003567160.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003] gi|21960013|gb|AAM86644.1|AE013910_6 DNA polymerase III, epsilon subunit [Yersinia pestis KIM 10] gi|45437400|gb|AAS62951.1| DNA polymerase III, epsilon chain [Yersinia pestis biovar Microtus str. 91001] gi|51590561|emb|CAH22202.1| DNA polymerase III, epsilon chain [Yersinia pseudotuberculosis IP 32953] gi|108776724|gb|ABG19243.1| DNA polymerase III, epsilon subunit [Yersinia pestis Nepal516] gi|108778470|gb|ABG12528.1| DNA polymerase III, epsilon subunit [Yersinia pestis Antiqua] gi|115346862|emb|CAL19748.1| DNA polymerase III, epsilon chain [Yersinia pestis CO92] gi|145210608|gb|ABP40015.1| DNA polymerase III, epsilon subunit [Yersinia pestis Pestoides F] gi|149291289|gb|EDM41364.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125] gi|152959968|gb|ABS47429.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis IP 31758] gi|162352279|gb|ABX86227.1| DNA polymerase III, epsilon subunit [Yersinia pestis Angola] gi|165913719|gb|EDR32338.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923428|gb|EDR40560.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165989106|gb|EDR41407.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207576|gb|EDR52056.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962610|gb|EDR58631.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050647|gb|EDR62055.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057113|gb|EDR66876.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749889|gb|ACA67407.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis YPIII] gi|186699410|gb|ACC90039.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis PB1/+] gi|229679289|gb|EEO75392.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516] gi|229689465|gb|EEO81526.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229697379|gb|EEO87426.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701619|gb|EEO89646.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A] gi|262361135|gb|ACY57856.1| DNA polymerase III subunit epsilon [Yersinia pestis D106004] gi|270335804|gb|EFA46581.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27] gi|294353557|gb|ADE63898.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003] gi|320014218|gb|ADV97789.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 254 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 82/187 (43%), Positives = 120/187 (64%), Gaps = 11/187 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+F+ I EF DF + AE + HNA FD+GF++ E + + +D P + Sbjct: 66 HGISDEFLADKPTFADITPEFLDFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFK 186 + F + Sbjct: 184 SLTFSME 190 >gi|325983345|ref|YP_004295747.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] gi|325532864|gb|ADZ27585.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] Length = 245 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 86/174 (49%), Positives = 112/174 (64%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ K RI+EI AVEL + T F +L P R++ AL++HG+ Sbjct: 1 MRQIVLDTETTGLECKLGHRIVEIAAVELCNRQFTGSHFHYYLNPE-RESDEGALQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL+DK F I EF +F + +AE I HNA FDVGF+N EL N LD S+I Sbjct: 60 TMEFLQDKAKFYEISREFLNFIS--DAELIIHNAPFDVGFLNHELGLCNLKALDNYCSQI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 DTL +A+ HP RN+L++LC+RY I S R HGALLD+ LL++VY+ M G Sbjct: 118 TDTLKLAKELHPGKRNNLDALCERYNIDNSKRKLHGALLDAELLAEVYLAMTRG 171 >gi|17546591|ref|NP_519993.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum GMI1000] gi|17428890|emb|CAD15574.1| probable dna polymerase III (epsilon chain) protein [Ralstonia solanacearum GMI1000] Length = 242 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 111/174 (63%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R +L P R+ A+ +HGI Sbjct: 1 MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYLNPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T+EF+ DKP F+ + E D+ Q AE I HNA FD+GF++ E +R+ P + Sbjct: 60 TNEFVADKPKFAEVVDEIRDYV--QGAEAIIHNAAFDLGFLDMEFKRLGLPPFREHLAGH 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL ARR P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G Sbjct: 118 IDTLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG 171 >gi|332288192|ref|YP_004419044.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179] gi|330431088|gb|AEC16147.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179] Length = 248 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 81/191 (42%), Positives = 118/191 (61%), Gaps = 14/191 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ ++ R +V D ETTG+ ++ RIIEIGAVEL++ T R F V+L P+ ++ Sbjct: 1 MQMDENRIVVLDTETTGMSGTSEPQIGHRIIEIGAVELVNRRYTGRNFHVYLQPD-QQVD 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QR 112 PEA+ +HGITDEFL DKP F + EF +F + AE + HNA FDV F+N E Q Sbjct: 60 PEAVAVHGITDEFLADKPRFKEVAQEFINFI--KGAELVIHNAPFDVAFMNQEFALQGQA 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + D L ++ D+L +AR+ +P +N L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 118 LTTDQL--CKVTDSLKVARQLYPGKKNSLDALCSRLGIDNSKRTLHGALLDAEILADVYL 175 Query: 173 KMMVGGSQINF 183 M G + Sbjct: 176 AMTGGQGSLQL 186 >gi|91788057|ref|YP_549009.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666] gi|91697282|gb|ABE44111.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666] Length = 234 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 82/174 (47%), Positives = 114/174 (65%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL ++N DRIIEIG VEL+ T +L P R + +ALK+HGI Sbjct: 1 MRQIVLDTETTGLSAENGDRIIEIGCVELVGRKLTGNNRHFYLNPE-RDSHEDALKVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 ++EFLKDKP F+++ E ++ Q AE I HNA FDV F+N EL+ I +DP+ +++ Sbjct: 60 SNEFLKDKPKFAAVADELLEYL--QGAEIIIHNAPFDVSFLNKELELIGRDPIRHCVAKV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D+L +A+ P RN L++LC R + S R+ HGALLD+ LL+DVYI + G Sbjct: 118 TDSLMMAKELFPGKRNSLDALCDRLDVDNSGRTLHGALLDAELLADVYINLTRG 171 >gi|326317571|ref|YP_004235243.1| DNA polymerase III subunit epsilon [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374407|gb|ADX46676.1| DNA polymerase III, epsilon subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 243 Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 130/237 (54%), Gaps = 14/237 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIE+G VELL+ T ++ P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 +EFLKDKP F+ + E ++ Q AE I HNA FDVGF+N EL+ + + Sbjct: 62 NEFLKDKPKFAEVVDEILEYL--QGAEIIIHNAAFDVGFLNKELELTGRPAFTSYVESVT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +A+ +P RN L++LC R G+ S R+ HGALLD+ LL+DVYI + G + Sbjct: 120 DTLVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIA 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237 E E + + L P+ +++EL HD+ + + G IW Sbjct: 180 DDAQEG---DESAVRLAPVDLSAFTLPVLLA-SEQELAAHDEVLAQIDKASGGKTIW 232 >gi|16124261|ref|NP_418825.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15] gi|221232944|ref|YP_002515380.1| DNA polymerase III subunit epsilon [Caulobacter crescentus NA1000] gi|13421091|gb|AAK21993.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15] gi|220962116|gb|ACL93472.1| DNA polymerase III, epsilon chain [Caulobacter crescentus NA1000] Length = 237 Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 131/235 (55%), Gaps = 9/235 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTG D K DR++EIG +E++D+ T R+F + C R EA K+HG++ Sbjct: 3 REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEY-CDPLRDMPAEAEKVHGLS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 FL KP F I F DF + +AHNA FD F+N EL++ K P+ R +DT Sbjct: 62 SAFLTGKPKFHEIADRFLDFVGDSVV--VAHNAAFDRQFVNFELEKCGKAPIHEERWVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LCKR+ I++ R KHGAL+D+HLL++VY+++ GG + Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLESRDKHGALIDAHLLAEVYLELQ-GGKERALELT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240 + T R +PL R T E + H + + L A+W ++ Sbjct: 179 HSTGAM---AVSTAIQGVYAARSRPLAPRSTDAEREIHAAWVRKNLKDKALWIQF 230 >gi|259909387|ref|YP_002649743.1| DNA polymerase III subunit epsilon [Erwinia pyrifoliae Ep1/96] gi|224965009|emb|CAX56539.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae Ep1/96] gi|283479460|emb|CAY75376.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae DSM 12163] Length = 252 Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 141/245 (57%), Gaps = 19/245 (7%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R PEA Sbjct: 5 NTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLIDPEA 63 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN---AELQRINKD 116 +HGI DEFL DKP+F+ I +F + N AE + HNA FD+GF++ A+LQR Sbjct: 64 FGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQRGIAK 121 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +I D+L++AR+ P RN L++LC RY I S R+ HGALLDS +L++V++ M Sbjct: 122 TETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFLTMT- 180 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTL---G 232 G Q + F +R ++ +T+ I+ + L R +++EL H+ + + G Sbjct: 181 -GGQTSLAFSMEGEREKQQGGETIHRIA--RPSSGLRVVRASEQELMAHEARLDLVEKKG 237 Query: 233 KNAIW 237 + +W Sbjct: 238 GSCLW 242 >gi|90414055|ref|ZP_01222038.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] gi|90324850|gb|EAS41378.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] Length = 246 Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 92/249 (36%), Positives = 142/249 (57%), Gaps = 22/249 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDR-----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IV D ETTG++ IIEIGAVE+++ T +F V++ P+ R Sbjct: 5 MKATNQRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTGNSFHVYIKPD-RTIE 63 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 EA+ +HGITDEFL KP + + EF +F + AE +AHNA FDVGF++ E +++N + Sbjct: 64 VEAIGVHGITDEFLIGKPVYKEVHDEFLEFI--KGAELVAHNAPFDVGFMDYEFRKLNPN 121 Query: 117 ---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 122 IGKTEDFCKVTDTLAMAKKIFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLL 181 Query: 174 MMVGGSQINFGFKTNEDR---FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G + + + EDR E K+ P LLK + +E++ H+ + Sbjct: 182 MTGGQTSLALSAE-REDRDAGTGSEIKRIAPGRKLLK-----VLHASADEIEAHESRLDI 235 Query: 231 LGK--NAIW 237 + K + +W Sbjct: 236 ISKKGDVMW 244 >gi|27904727|ref|NP_777853.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340041|sp|Q89AN3|DPO3E_BUCBP RecName: Full=DNA polymerase III subunit epsilon gi|27904124|gb|AAO26958.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 245 Score = 154 bits (389), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 99/255 (38%), Positives = 143/255 (56%), Gaps = 38/255 (14%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 RKIV DIETTG++ KN +IIEIGAVE+++ T F ++ PN R ++ K+ Sbjct: 6 RKIVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPN-RLIDKQSFKI 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119 HGITD FL DKP F I +F ++ N++ I HNAKFDVGFIN EL IN D D Sbjct: 65 HGITDNFLLDKPKFHEISVKFLEYIT--NSDLIIHNAKFDVGFINYELNMINSDKRKISD 122 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++DTL +AR+ P +N L++LC RY I +SHR H AL+D+ LL+ VY M Sbjct: 123 YCNVVDTLPLARQLFPGKKNSLDALCNRYKINVSHRDFHSALIDAKLLAKVYTFMTSFQQ 182 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI---------TKEELDEHDKTIQT 230 I+ F N N++ ++++ L +R+ TK+EL +H K ++ Sbjct: 183 SISI-FDKNS------------NLNSIQKNAKLDSRVPFRSTLLLATKDELQQHMKYLKY 229 Query: 231 LGK---NAIW--DRY 240 + + N +W D+Y Sbjct: 230 VKQETGNCVWLEDKY 244 >gi|120611120|ref|YP_970798.1| DNA polymerase III subunit epsilon [Acidovorax citrulli AAC00-1] gi|120589584|gb|ABM33024.1| DNA polymerase III, epsilon subunit [Acidovorax citrulli AAC00-1] Length = 243 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 130/237 (54%), Gaps = 14/237 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIE+G VELL+ T ++ P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 +EFLKDKP F+ + E ++ Q AE I HNA FDVGF+N EL+ + + Sbjct: 62 NEFLKDKPKFAEVVDEILEYL--QGAEIIIHNAAFDVGFLNKELELTGRPAFTSYVESVT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +A+ +P RN L++LC R G+ S R+ HGALLD+ LL+DVYI + G + Sbjct: 120 DTLVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIA 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237 E E + + L P+ +++EL HD+ + + G IW Sbjct: 180 DDAQEG---DETAVRLAPVDLSAFTLPVLLA-SEQELAAHDEVLAQIDKASGGKTIW 232 >gi|121609336|ref|YP_997143.1| DNA polymerase III subunit epsilon [Verminephrobacter eiseniae EF01-2] gi|121553976|gb|ABM58125.1| DNA polymerase III, epsilon subunit [Verminephrobacter eiseniae EF01-2] Length = 237 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 81/173 (46%), Positives = 110/173 (63%), Gaps = 6/173 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL + DRIIE+G VELL+ T ++ P GR + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSADSGDRIIELGCVELLNRKLTGNNLHLYFNP-GRDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124 +EFLKDKP F+ + + + Q AE I HNA FDVGF+N EL+ L R+ Sbjct: 62 NEFLKDKPRFAELVDDILQYL--QGAELIIHNAAFDVGFLNKELELAGHPALAHCVERVT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 DTL++A+ +P RN L++LC R G+ S R+ HGALLD+ LL+DVYI + G Sbjct: 120 DTLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYIHLTRG 172 >gi|254468292|ref|ZP_05081698.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13] gi|207087102|gb|EDZ64385.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13] Length = 219 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/186 (45%), Positives = 115/186 (61%), Gaps = 6/186 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGLD ++ RIIEI AVE+++ TN F V++ P R+ A ++HG+ Sbjct: 1 MRQIFLDTETTGLDPAQGHRIIEIAAVEMINRQVTNNQFHVYINPE-REIDEAAQEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F SI +F F ++E I HNA FD+GF+N EL RI K ++ I Sbjct: 60 TLEFLSDKPGFESISEKFISFI--ADSELIIHNAPFDIGFLNMELGRIKKGVVEDYAEVI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L +AR P RN+L++LC+ YG+ S R+ HGALLDS LL++V+I M G + Sbjct: 118 TDSLVMARELRPGQRNNLDALCRHYGVDNSERNLHGALLDSLLLAEVFIGMTRGQEALEI 177 Query: 184 GFKTNE 189 F E Sbjct: 178 DFNNQE 183 >gi|117923346|ref|YP_863963.1| DNA polymerase III subunit epsilon [Magnetococcus sp. MC-1] gi|117607102|gb|ABK42557.1| DNA polymerase III, epsilon subunit [Magnetococcus sp. MC-1] Length = 237 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/241 (39%), Positives = 141/241 (58%), Gaps = 16/241 (6%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG D K RIIEIG VEL++ K + Q ++ P R+ +A K+HGIT Sbjct: 3 RLIVLDTETTGFDPKEGHRIIEIGCVELVNMRKGDER-QWYVNPE-REIPADATKVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 D + + P F I+ EF F E + + HNA+FD+ F+NAEL R+NK + P R ID Sbjct: 61 DADVANSPKFKEIYHEFLAFIGEDS--LVIHNAEFDMRFLNAELTRLNKRLVMPMERAID 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +ARRK P S +L++LCKR G+ S R+ HGALLD+HLL++VY+++M GG+Q + Sbjct: 119 TIPLARRKFPGSTVNLDALCKRLGVDNSGRTFHGALLDAHLLAEVYVELM-GGNQFSLEM 177 Query: 186 KTNEDRFFKE----EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238 +E + K P L+ P ++++E H+ +Q L + A+W+ Sbjct: 178 AADESGRIAQPSDSPKDGAPGPGLMM--APRDWQVSEESTQAHEAFLQLLDRESGGAVWN 235 Query: 239 R 239 + Sbjct: 236 K 236 >gi|162148736|ref|YP_001603197.1| DNA polymerase III epsilon subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209545498|ref|YP_002277727.1| DNA polymerase III subunit epsilon [Gluconacetobacter diazotrophicus PAl 5] gi|161787313|emb|CAP56907.1| putative DNA polymerase III epsilon subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209533175|gb|ACI53112.1| DNA polymerase III, epsilon subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 130/231 (56%), Gaps = 10/231 (4%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTGLD ++ DR+IEI A+EL+ T R F V + P+ R EA ++HG T Sbjct: 3 RAILFDTETTGLDPARGDRVIEIAALELVGDLPTGRHFHVLIHPD-RDIPEEASRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ KP F I +F F + + IAHNA+FD GF+NAEL+R + L R++DT Sbjct: 62 LADLEGKPRFHEIADDFLAFIGQDD--LIAHNARFDFGFLNAELKRAERPALSLDRMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L IAR ++P N L++LC+R+ I +S R+ H ALLD LL++VY+++M GG Q G Sbjct: 120 LDIARDRYPGLPNSLDALCRRFSIDLSARTTHNALLDCRLLAEVYLELM-GGRQRGLGLT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + + L P T++EL H + + + K IW Sbjct: 179 VQD----GGGAQVSYAYDLAGARTPRLIVPTEQELAAHGRFLDKI-KEPIW 224 >gi|238759160|ref|ZP_04620328.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236] gi|238702576|gb|EEP95125.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236] Length = 259 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/192 (42%), Positives = 124/192 (64%), Gaps = 11/192 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKPSF+ I EF +F + AE + HNA FD+GF++ E + + +D P + Sbjct: 71 HGISDEFLADKPSFADITPEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 128 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188 Query: 180 QINFGFKTNEDR 191 ++F + ++ + Sbjct: 189 SLSFSMEGDQSQ 200 >gi|300703774|ref|YP_003745376.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum CFBP2957] gi|299071437|emb|CBJ42756.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum CFBP2957] Length = 242 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 80/176 (45%), Positives = 114/176 (64%), Gaps = 10/176 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R ++ P R+ A+ +HGI Sbjct: 1 MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPS 121 T+EF+ DKP F+ + +E D+ Q AE I HNA FD+GF++ E +R+ ++ LD Sbjct: 60 TNEFVADKPKFAEVVAEIRDYV--QGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGH 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL ARR P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G Sbjct: 118 --IDTLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG 171 >gi|238784821|ref|ZP_04628822.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970] gi|238714237|gb|EEQ06248.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970] Length = 259 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/192 (43%), Positives = 123/192 (64%), Gaps = 11/192 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+F+ I EF +F + AE I HNA FD+GF++ E + + +D P + Sbjct: 71 HGISDEFLADKPTFADIAPEFLEFI--RGAELIIHNAAFDIGFMDHEFRMLQQDIPKTET 128 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +LS+VY+ M G + Sbjct: 129 FCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILSEVYLAMTGGQT 188 Query: 180 QINFGFKTNEDR 191 + F + ++ + Sbjct: 189 SLTFSMEGDQSQ 200 >gi|52425625|ref|YP_088762.1| DNA polymerase III subunit epsilon [Mannheimia succiniciproducens MBEL55E] gi|52307677|gb|AAU38177.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E] Length = 260 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/259 (36%), Positives = 143/259 (55%), Gaps = 36/259 (13%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+I+ D ETTG++ + IIEIGAVE+++ T R +++ P+ R PEA+K+ Sbjct: 9 RQILLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPD-RLVDPEAIKV 67 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDP 120 HGITDE L+DKP F+ + EF DF + AE + HNA FDVGF++ E ++ I+ D Sbjct: 68 HGITDEMLEDKPVFTEVAQEFIDFI--KGAELLIHNAPFDVGFMDYEFRKHHIDVKTADI 125 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + DTL +AR+ +P RN L++LC R GI + R HGALLD+ +L DVY+ M G + Sbjct: 126 CSVTDTLQLARQMYPGKRNSLDALCDRLGIDNTKRVLHGALLDAEILGDVYLVMTGGQTS 185 Query: 181 INFGFKTNEDR-----------FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 + F NE + K ++SLL+ T EEL H + I+ Sbjct: 186 L---FDDNEPELADIHSAKAHILAQNADKVAHHLSLLQP--------TDEELQAHLEYIK 234 Query: 230 TLGK----NAIWDRYISSN 244 + K N +W++ + S+ Sbjct: 235 LINKKSKDNCLWEKRLGSD 253 >gi|260596631|ref|YP_003209202.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032] gi|260215808|emb|CBA28259.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032] Length = 243 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 137/243 (56%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFMV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL +KP F + +F D+ + AE + HNA FD+GF++ E + + P + Sbjct: 66 HGISDEFLMNKPVFGDVVEDFLDYI--RGAELVIHNASFDIGFMDYEFGMLKRGLPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183 Query: 180 QINFGFKTN--EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLGKN 234 I F + + + R ++ V S LK R EEL H+ +Q G + Sbjct: 184 SIAFAMEGDGQQQRDDTGIQRVVRQASRLK-----VVRACDEELAAHESRLDLVQKKGGS 238 Query: 235 AIW 237 +W Sbjct: 239 CLW 241 >gi|194364623|ref|YP_002027233.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia R551-3] gi|194347427|gb|ACF50550.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia R551-3] Length = 243 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 130/239 (54%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +RI+EIG VEL T + ++ P+ A ++ G+ Sbjct: 1 MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQG-AQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T EFL DKP F+ I EF F + AE I HNA FD+GF++ EL + D Sbjct: 60 TLEFLDDKPDFAQIADEFLAFID--GAELIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL +AR + P RN L++LC+R G+ SHR+ HG LLD+ +L DVYI + G +I Sbjct: 118 VIDTLVMARERFPGQRNSLDALCRRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238 FG +E + LL R + + T EL+ H ++ L K +A+WD Sbjct: 178 FGLGDDEAGAAGAALQAFDTSKLLPRPRVV---ATPSELEAHTARLERLRKKAGHALWD 233 >gi|303250637|ref|ZP_07336834.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650625|gb|EFL80784.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 257 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/254 (36%), Positives = 142/254 (55%), Gaps = 22/254 (8%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + Sbjct: 60 EEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117 Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 MM GG G ED E + I+ + + +++EE H++ ++ Sbjct: 178 -MMTGGQLALLG---EEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLK 233 Query: 230 TLGK----NAIWDR 239 + K N IW R Sbjct: 234 LIDKKSKGNCIWMR 247 >gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides ATCC 15264] gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides ATCC 15264] Length = 247 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 133/235 (56%), Gaps = 8/235 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG D + DR+IE+G +E+LD T RTF F+ P R +A+++HGIT Sbjct: 3 REIVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPE-RLIPADAIRVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +KD P F+ I + DF +A IAHNA+FD FI+ E R L +R IDT Sbjct: 62 DDKVKDAPKFAQIVVDLMDFIG--DAPVIAHNAQFDRNFIDHECGRCGHPLLHETRWIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +A+++ P N L++LCKRY I++ R+ HGAL+D+ LL++VY+++ GG + Sbjct: 120 LQLAQKRFPGMANSLDALCKRYKISLVDRTLHGALIDARLLAEVYLELK-GGKERVLDLS 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240 + + L R +PL R+ E + H + TL ++W+ Y Sbjct: 179 SRRESVAAAAHAAAGGYGL--RPRPLAPRLHASEGEAHAAFLAATLKDLSLWEGY 231 >gi|78046646|ref|YP_362821.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925275|ref|ZP_08186679.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118] gi|78035076|emb|CAJ22721.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544321|gb|EGD15700.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118] Length = 244 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/239 (37%), Positives = 133/239 (55%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T EFL DKP F + EF + + AE I HNA FD+GF++ EL + ++ + Sbjct: 60 TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + + L +P +T EL H+ + L K A+WD Sbjct: 178 FA-SADAGQQTDAASGVIAFDPALLLPRPRIA-VTASELQAHEARLAQLRKKAGRALWD 234 >gi|238762660|ref|ZP_04623629.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC 33638] gi|238698965|gb|EEP91713.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC 33638] Length = 259 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 81/192 (42%), Positives = 125/192 (65%), Gaps = 11/192 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+F+ I SEF +F + AE + HNA FD+GF++ E + + +D P + Sbjct: 71 HGISDEFLADKPTFADIASEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 128 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188 Query: 180 QINFGFKTNEDR 191 ++F + ++ + Sbjct: 189 SLSFSMEGDQSQ 200 >gi|325914917|ref|ZP_08177249.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC 35937] gi|325538810|gb|EGD10474.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC 35937] Length = 244 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/239 (37%), Positives = 133/239 (55%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T EFL DKP F + EF + + AE I HNA FD+GF++ EL + +D + Sbjct: 60 TLEFLADKPLFGDVVEEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDGYGRIIDRAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ +HR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + E + L +P +T E H+ + L K A+WD Sbjct: 178 FA-SADAGQNSNESSGMIAFDPALLLPRPRVV-VTASESQAHEARLAQLRKKAGRALWD 234 >gi|322515310|ref|ZP_08068307.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus ureae ATCC 25976] gi|322118686|gb|EFX90898.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus ureae ATCC 25976] Length = 257 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 94/254 (37%), Positives = 144/254 (56%), Gaps = 22/254 (8%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + Sbjct: 60 EEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117 Query: 116 DPLDPSRII---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + I D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEICSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 +M GG G ED E T + I+ + + ++++EE H++ ++ Sbjct: 178 -IMTGGQLALLG---EEDASTNHENITDLGLGTITKFETSGLIVLQLSEEEQAAHEEYLK 233 Query: 230 TLGK----NAIWDR 239 + K N IW R Sbjct: 234 LIDKKSKGNCIWMR 247 >gi|121997071|ref|YP_001001858.1| DNA polymerase III subunit epsilon [Halorhodospira halophila SL1] gi|121588476|gb|ABM61056.1| DNA polymerase III, epsilon subunit [Halorhodospira halophila SL1] Length = 243 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/239 (38%), Positives = 133/239 (55%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTG+D ++ RIIEIG VEL+ T F +L P+ R A +HG+ Sbjct: 1 MRQILLDTETTGMDPTEGHRIIEIGCVELVRRRLTGNNFHEYLNPD-RAVDEGAENVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122 ++ FL DKP F+ I F D+ Q+AE I HNA FDVGFI+AEL R+ D Sbjct: 60 SNRFLADKPRFADIARRFVDYV--QDAELIIHNAPFDVGFIDAELARLGPAWGQLEDYCT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I D+L +ARR HP R L++LCKRY + S R HGALLDS LL++VY+ M G +++ Sbjct: 118 ITDSLQMARRMHPGQRCSLDALCKRYSVDGSRRELHGALLDSELLAEVYLAMTGGQGKLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ----TLGKNAIW 237 + E + ++ L+ +P + E + H++ +Q T G A+W Sbjct: 178 LEGEGLEPGGAEPVQRLSAERPRLRVPEP-----GELEREAHEQLLQRIEATCGGPALW 231 >gi|32035046|ref|ZP_00135112.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208748|ref|YP_001053973.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae L20] gi|126097540|gb|ABN74368.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 257 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/254 (36%), Positives = 142/254 (55%), Gaps = 22/254 (8%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + Sbjct: 60 DEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLGN 117 Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 MM GG G ED E + I+ + + +++EE H++ ++ Sbjct: 178 -MMTGGQLALLG---EEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLK 233 Query: 230 TLGK----NAIWDR 239 + K N IW R Sbjct: 234 LIDKKSKGNCIWMR 247 >gi|15616860|ref|NP_240073.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11132278|sp|P57337|DPO3E_BUCAI RecName: Full=DNA polymerase III subunit epsilon gi|25299956|pir||G84958 DNA-directed DNA polymerase (EC 2.7.7.7) epsilon chain [imported] - Buchnera sp. (strain APS) gi|10038924|dbj|BAB12959.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 237 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 100/244 (40%), Positives = 138/244 (56%), Gaps = 18/244 (7%) Query: 5 NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N+ R I+ D ETTG++ N RIIEIGAVE++D T F V++ P GR A Sbjct: 2 NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 LK+HGIT++FL DKP F I F ++ +N+ + HNA FDVGFIN EL+ +NK Sbjct: 61 LKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIKI 118 Query: 120 PS--RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + IIDTL IAR P +N L++LC RY I SHR+ H A++DS+LL +Y+ +M G Sbjct: 119 NTFCSIIDTLKIARELFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYL-LMTG 177 Query: 178 GSQINFGFKT-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKN 234 G F T N FK+ KK + LK + T +E D H+K +Q + Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233 Query: 235 AIWD 238 +W+ Sbjct: 234 CLWN 237 >gi|190150601|ref|YP_001969126.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303252089|ref|ZP_07338258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|189915732|gb|ACE61984.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649071|gb|EFL79258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 257 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/254 (36%), Positives = 142/254 (55%), Gaps = 22/254 (8%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + Sbjct: 60 DEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117 Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 MM GG G ED E + I+ + + +++EE H++ ++ Sbjct: 178 -MMTGGQLALLG---EEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLK 233 Query: 230 TLGK----NAIWDR 239 + K N IW R Sbjct: 234 LIDKKSKGNCIWMR 247 >gi|219681615|ref|YP_002468001.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682172|ref|YP_002468556.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471303|ref|ZP_05635302.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621905|gb|ACL30061.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624458|gb|ACL30613.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311087677|gb|ADP67756.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 237 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 139/244 (56%), Gaps = 18/244 (7%) Query: 5 NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N+ R I+ D ETTG++ N RIIEIGAVE++D T F V++ P GR A Sbjct: 2 NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 LK+HGIT++FL DKP F I F ++ +N+ + HNA FDVGFIN EL+ +NK Sbjct: 61 LKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIKI 118 Query: 120 PS--RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + IIDTL +AR+ P +N L++LC RY I SHR+ H A++DS+LL +Y+ +M G Sbjct: 119 NTFCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYL-LMTG 177 Query: 178 GSQINFGFKT-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKN 234 G F T N FK+ KK + LK + T +E D H+K +Q + Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233 Query: 235 AIWD 238 +W+ Sbjct: 234 CLWN 237 >gi|311086562|gb|ADP66643.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 237 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/235 (41%), Positives = 136/235 (57%), Gaps = 16/235 (6%) Query: 5 NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N+ R I+ D ETTG++ N RIIEIGAVE++D T F V++ P GR A Sbjct: 2 NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 LK+HGIT++FL DKP F I F ++ +N+ + HNA FDVGFIN EL+ +NK Sbjct: 61 LKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIKI 118 Query: 120 PS--RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + IIDTL +AR+ P +N L++LC RY I SHR+ H A++DS+LL +Y+ +M G Sbjct: 119 NTFCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYL-LMTG 177 Query: 178 GSQINFGFKT-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 G F T N FK+ KK + LK + T +E D H+K +Q + Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYM 228 >gi|307246199|ref|ZP_07528280.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255179|ref|ZP_07536997.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259617|ref|ZP_07541341.1| hypothetical protein appser11_14150 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852808|gb|EFM85032.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862052|gb|EFM94028.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866262|gb|EFM98126.1| hypothetical protein appser11_14150 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 257 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 140/251 (55%), Gaps = 16/251 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + Sbjct: 60 EEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117 Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 MM GG G + + I+ + + +++EE H++ ++ + Sbjct: 178 -MMTGGQLALLGEEDATSNHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236 Query: 233 K----NAIWDR 239 K N IW R Sbjct: 237 KKSKGNCIWMR 247 >gi|227112969|ref|ZP_03826625.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 245 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 143/243 (58%), Gaps = 20/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNMLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+++ I +F DF + AE + HNA FD+GF++ E + +N+D P + Sbjct: 66 HGISDEFLADKPTYADIVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE--ELDEHDKTIQTL---GKN 234 + F + +++ + I + R + T + + EL H++ + + G + Sbjct: 184 SLTFSMEGET----QQKSENTETIQRIVRPQSALTVLYADEAELLAHEQRLDLIAKKGGS 239 Query: 235 AIW 237 +W Sbjct: 240 CLW 242 >gi|325920993|ref|ZP_08182879.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC 19865] gi|325548527|gb|EGD19495.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC 19865] Length = 244 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/239 (36%), Positives = 136/239 (56%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T EFL DKP F+ + EF + + AE I HNA FD+GF++ EL + + ++ + Sbjct: 60 TLEFLADKPLFADVVEEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDNYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + ++ + L +P +T E H+ + L K A+WD Sbjct: 178 FA-SADAGQSTQDADGMISFDPALLLPRPRVA-VTASESQAHEARLAQLRKKAGRALWD 234 >gi|227329796|ref|ZP_03833820.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 245 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 80/187 (42%), Positives = 121/187 (64%), Gaps = 11/187 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+++ I +F DF + AE + HNA FD+GF++ E + +N+D P + Sbjct: 66 HGISDEFLADKPTYADIVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFK 186 + F + Sbjct: 184 SLTFSME 190 >gi|85058570|ref|YP_454272.1| DNA polymerase III subunit epsilon [Sodalis glossinidius str. 'morsitans'] gi|84779090|dbj|BAE73867.1| DNA polymerase III epsilon subunit [Sodalis glossinidius str. 'morsitans'] Length = 252 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 141/246 (57%), Gaps = 25/246 (10%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHFHVYLKPD-RLVDPEAFNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+F+ + EF F + E + HNA FD+GF++ E +N+ Sbjct: 66 HGISDEFLADKPTFADVADEFLHFI--RGGELVIHNAPFDIGFMDYEFGMLNRGIAKTDT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L +AR+ P RN L++LC RY I S R+ HGALLD+ +L+DV++ M G + Sbjct: 124 FCKVTDSLLLARKMFPGKRNSLDALCDRYLIDNSKRTLHGALLDAEILADVFLLMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI-----TKEELDEHDK---TIQTL 231 + F + ++E++ V ++R + + T + + EE+ H++ +Q Sbjct: 184 AMRFAMEG------EQEQRDVGETVQIQRVQRVQTSLKVIYASDEEVVAHEQRLDLVQKK 237 Query: 232 GKNAIW 237 G + +W Sbjct: 238 GGSCVW 243 >gi|319762901|ref|YP_004126838.1| DNA polymerase iii, epsilon subunit [Alicycliphilus denitrificans BC] gi|330824980|ref|YP_004388283.1| DNA polymerase III subunit epsilon [Alicycliphilus denitrificans K601] gi|317117462|gb|ADU99950.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans BC] gi|329310352|gb|AEB84767.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans K601] Length = 242 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 135/237 (56%), Gaps = 15/237 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++N DRIIE+G VELL T ++L P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAENGDRIIELGCVELLSRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 +EFL+DKP F+ + + ++ + AE I HNA FDVGF++ EL+ PL +I Sbjct: 62 NEFLRDKPKFAEVVHDILEYL--RGAELIIHNASFDVGFLDKELELAGLPPLAAHVDGVI 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++A+ P RN L++LC R + S R+ HGALLD+ LL+DVYI M G + Sbjct: 120 DTLAMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINMTRGQDALLIM 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237 +T E V + L + P+ + +EL EH+ + + K++ IW Sbjct: 180 DETAN----GEGGVKVAAVDLSRLVLPVLLA-SDQELAEHEDLLAQIDKSSAGKTIW 231 >gi|153208787|ref|ZP_01947019.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat Q177'] gi|161831371|ref|YP_001596268.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331] gi|165920933|ref|ZP_02219603.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334] gi|120575749|gb|EAX32373.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat Q177'] gi|161763238|gb|ABX78880.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331] gi|165916781|gb|EDR35385.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334] Length = 232 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 135/239 (56%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL + RIIEIGA+E+++ T ++ P R +A+++HGI Sbjct: 1 MRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPE-RSIERDAIEIHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 TD FL DKP F I +E F + AE I HNA FDVGF+N EL+ K + Sbjct: 60 TDSFLIDKPLFKDIATELISFL--KGAELIIHNAPFDVGFLNHELKLTGQSFKTLTHYCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL+IAR+KHP N+L++LC+RY + S+R HGALLD+ LL+ VY+ +M GG + Sbjct: 118 VLDTLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYL-LMTGGQTVL 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238 F E + F ++V L RD R E + H +Q L +N +W+ Sbjct: 177 F-----EQQGFAVASRSVSVRPLGTDRDSLSVIRANAAETEAHRAFLQLLTENGLCLWN 230 >gi|254361771|ref|ZP_04977906.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica PHL213] gi|261494027|ref|ZP_05990530.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496213|ref|ZP_05992619.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093306|gb|EDN74302.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica PHL213] gi|261308165|gb|EEY09462.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310193|gb|EEY11393.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 258 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/255 (35%), Positives = 142/255 (55%), Gaps = 17/255 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M + +R++V D ETTG++ IIEIGAVE+++ T RT+ V++ P R+ Sbjct: 1 MTEEKIIRQVVLDTETTGMNMAGGPPQIGHNIIEIGAVEVINRRLTGRTYHVYIKPP-RE 59 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 EA+ +HGIT+EFL+DKP F+ I EF DF + AE I HNA FDV F++ E + Sbjct: 60 VDEEAIAVHGITNEFLQDKPVFAEIAEEFLDFI--KGAELIIHNAPFDVAFMDQEFSYLP 117 Query: 115 KDPLDPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P + + D+L +ARR +P RN+L++LC R GI S R HGALLD+ +L+DV+ Sbjct: 118 NPPAKTAEMCTVTDSLQMARRMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVF 177 Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 + MM GG G + E + + + +L D+ + + EE + H ++ + Sbjct: 178 L-MMTGGQISLLGEEETEVVSEVIDIEEEFSAIVLNADEAIILKANDEEEESHLALLKLI 236 Query: 232 GK----NAIWDRYIS 242 K N +W + ++ Sbjct: 237 EKKSKGNCLWTKALT 251 >gi|241763763|ref|ZP_04761810.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN] gi|241366982|gb|EER61378.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN] Length = 237 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 80/173 (46%), Positives = 112/173 (64%), Gaps = 6/173 (3%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIEIG VEL+ T +L P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAEGGDRIIEIGCVELVSRKLTGNNKHFYLNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 +EFL+DKP F+++ E ++ Q AE I HNA FDVGF+N EL+ + + L + Sbjct: 62 NEFLRDKPKFAAVADELLEYL--QGAEVIIHNAAFDVGFLNKELELLGRPALHTFVDSVT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 DTL++A+ +P RN L++LC R G+ S R+ HGALLD+ LL+DVYI + G Sbjct: 120 DTLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRG 172 >gi|83944955|ref|ZP_00957321.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii HTCC2633] gi|83851737|gb|EAP89592.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii HTCC2633] Length = 236 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 137/231 (59%), Gaps = 11/231 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+FD ETTGLD + DR+ E+G VE++D T + ++ + P R E + G T Sbjct: 4 REIIFDTETTGLDPRGGDRVTELGCVEVIDLIPTGKDLRILINPE-RDIPAEVTAVTGHT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E LKD+P F+ I +F DF +++ +AHNA FD+GFIN EL+R K + +R IDT Sbjct: 63 WEMLKDEPKFAEIVDQFLDFI--EDSTLVAHNAMFDMGFINMELERCGKPIIPKARFIDT 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +IAR K P + L++LCKR+ +++ R+KHGAL+DS+LL++VY+++ GG + + F Sbjct: 121 AAIAREKFPGAPASLDALCKRFDVSLDSRTKHGALIDSYLLAEVYLELN-GGREQSLSFT 179 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 ++ TV + R K L + +T+ E H + I + + +W Sbjct: 180 GSDGG-----DGTVVYPTRAARPKSLPSLVTERERAAHAEFISEM-DDPLW 224 >gi|289664175|ref|ZP_06485756.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668767|ref|ZP_06489842.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 244 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/244 (37%), Positives = 136/244 (55%), Gaps = 22/244 (9%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T EFL DKP F + EF + + AE I HNA FD+GF++ EL + + ++ + Sbjct: 60 TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDNYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 F-----GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--- 234 F G +TN + LL R + +T E H+ + L K Sbjct: 178 FASADAGQQTNSASGMIAFDPAL----LLPRPR---VAVTASESQAHEARLAQLRKKAGR 230 Query: 235 AIWD 238 A+WD Sbjct: 231 ALWD 234 >gi|253689504|ref|YP_003018694.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756082|gb|ACT14158.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 245 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 80/187 (42%), Positives = 121/187 (64%), Gaps = 11/187 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNMLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+++ I +F DF + AE + HNA FD+GF++ E + +N+D P + Sbjct: 66 HGISDEFLADKPTYADIVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFK 186 + F + Sbjct: 184 SLTFSME 190 >gi|238750479|ref|ZP_04611980.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380] gi|238711410|gb|EEQ03627.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380] Length = 259 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/192 (42%), Positives = 124/192 (64%), Gaps = 11/192 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLIDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+F+ I EF +F + AE + HNA FD+GF++ E + + +D P + Sbjct: 71 HGISDEFLADKPTFADITPEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 128 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188 Query: 180 QINFGFKTNEDR 191 ++F + ++ + Sbjct: 189 SLSFSMEGDQSQ 200 >gi|160872285|ref|ZP_02062417.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli] gi|159121084|gb|EDP46422.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli] Length = 235 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 97/241 (40%), Positives = 132/241 (54%), Gaps = 16/241 (6%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTG D N RIIEIG +EL+D T R F +L P GR + P A +HG+ Sbjct: 1 MRQIILDTETTGRDINNGHRIIEIGCLELIDRQLTKRQFHCYLNP-GRDSDPGAFAIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122 + EFL DKP F++I E +F ++++ I HNA FD+ F+ EL K D + Sbjct: 60 STEFLMDKPVFTTIADELLNFI--KDSQLIIHNAPFDLAFLEYELTLTKKKYKKMTDYCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+D+L +AR+ HP RN L++LCKRY I S R KHGALLD+ LL+ VY+ M G + + Sbjct: 118 ILDSLLLARQLHPGQRNSLDALCKRYNIDHSKRDKHGALLDAELLARVYLAMTGGQTHLF 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT---IQTLGKNAIWDR 239 K + +KKT +L P+ T EEL H I +L W Sbjct: 178 NEPKPLTIQTHARQKKTTEATTL-----PII-YATCEELTAHKNYLNHIYSLSGQCKWLH 231 Query: 240 Y 240 Y Sbjct: 232 Y 232 >gi|113460748|ref|YP_718815.1| DNA polymerase III subunit epsilon [Haemophilus somnus 129PT] gi|170719139|ref|YP_001784286.1| DNA polymerase III subunit epsilon [Haemophilus somnus 2336] gi|112822791|gb|ABI24880.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT] gi|168827268|gb|ACA32639.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 2336] Length = 252 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 115/184 (62%), Gaps = 11/184 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+I+ D ETTG++ + IIEIGAVE+++ T R +++ P+ R PEA+K+ Sbjct: 9 RQIILDTETTGMNEFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPD-RLVDPEAIKV 67 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDP 120 HGITDE L DKP FS+I EF DF + AE I HNA FD+GF++ E ++ N + D Sbjct: 68 HGITDEMLADKPDFSAIAQEFIDFI--KGAELIIHNAPFDIGFMDYEFKKHNFNINTADI 125 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I DTL +AR+ +P RN L++LC R I S R+ HGALLD+ +L DVY+ M GG Sbjct: 126 CLITDTLQMARQMYPGKRNSLDALCDRLNIDNSKRTLHGALLDAEILGDVYLA-MTGGQT 184 Query: 181 INFG 184 FG Sbjct: 185 SLFG 188 >gi|311085987|gb|ADP66069.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 237 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 98/244 (40%), Positives = 139/244 (56%), Gaps = 18/244 (7%) Query: 5 NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N+ R I+ D ETTG++ N RIIEIGAVE++D T F V++ P GR A Sbjct: 2 NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 LK+HGIT++FL DKP F I F ++ +N+ + HNA FDVGFIN EL+ +NK Sbjct: 61 LKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIKI 118 Query: 120 PS--RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + I+DTL +AR+ P +N L++LC RY I SHR+ H A++DS+LL +Y+ +M G Sbjct: 119 NTFCSIVDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYL-LMTG 177 Query: 178 GSQINFGFKT-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKN 234 G F T N FK+ KK + LK + T +E D H+K +Q + Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233 Query: 235 AIWD 238 +W+ Sbjct: 234 CLWN 237 >gi|238790133|ref|ZP_04633910.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC 33641] gi|238721802|gb|EEQ13465.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC 33641] Length = 259 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 143/243 (58%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+F+ I EF +F + AE + HNA FD+GF++ E + + +D P + Sbjct: 71 HGISDEFLADKPTFADITPEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 128 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 129 FCTITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188 Query: 180 QINFGFKTNEDRFFKEE--KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKN 234 ++F + ++ + E ++ + S LK EEL+ H+ + + G + Sbjct: 189 SLSFSMEGDQSQNDSSEDIQRIIRPASGLK-----IIYAADEELEAHNSRLDLVMKKGGS 243 Query: 235 AIW 237 +W Sbjct: 244 CLW 246 >gi|294637713|ref|ZP_06715990.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685] gi|291089143|gb|EFE21704.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685] Length = 243 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 139/245 (56%), Gaps = 25/245 (10%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVINRRLTGRNFHVYLKPD-RLVDPEAFMV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+D+FL +PSF+ + EF +F + AE + HNA FD+GF++ E ++ +D P + Sbjct: 66 HGISDDFLLGQPSFADVVDEFLEFI--RGAELVIHNAPFDIGFMDYEFAKLGRDLPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMT--GG 181 Query: 180 QINFGFKTNEDRFFK----EEKKTVPNISLLKRDKPLFTRITKEELDEHDK---TIQTLG 232 Q + F + D + E ++ V L+ ++ EL H++ +Q G Sbjct: 182 QTSLSFASEGDSATQVQAAELRRVVRGAQGLR-----VVYASEAELAAHEQRLDLVQKKG 236 Query: 233 KNAIW 237 + +W Sbjct: 237 GSCLW 241 >gi|311087143|gb|ADP67223.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 237 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 98/244 (40%), Positives = 139/244 (56%), Gaps = 18/244 (7%) Query: 5 NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N+ R I+ D ETTG++ N RIIEIGAVE++D T F V++ P GR A Sbjct: 2 NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESGA 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 LK+HGIT++FL DKP F I F ++ +N+ + HNA FD+GFIN EL+ +NK Sbjct: 61 LKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDIGFINQELEILNKKIKI 118 Query: 120 PS--RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + IIDTL +AR+ P +N L++LC RY I SHR+ H A++DS+LL +Y+ +M G Sbjct: 119 NTFCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYL-LMTG 177 Query: 178 GSQINFGFKT-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKN 234 G F T N FK+ KK + LK + T +E D H+K +Q + Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233 Query: 235 AIWD 238 +W+ Sbjct: 234 CLWN 237 >gi|300691174|ref|YP_003752169.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07] gi|299078234|emb|CBJ50881.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07] Length = 242 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 82/175 (46%), Positives = 113/175 (64%), Gaps = 8/175 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R ++ P R+ A+ +HGI Sbjct: 1 MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123 T+EF+ DKP F+ I +E D+ Q AE I HNA FD+GF++ E QR+ K P + Sbjct: 60 TNEFVADKPKFAEIVAEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRL-KLPSFREHLAG 116 Query: 124 -IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL ARR P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G Sbjct: 117 HIDTLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG 171 >gi|94676582|ref|YP_588911.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219732|gb|ABF13891.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 240 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 11/224 (4%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV DIETTG++ RIIEIGAVE+++ T + F V+L P R EA K+ Sbjct: 3 RQIVLDIETTGINKLGVHYYGHRIIEIGAVEIINRRITGKNFHVYLNPE-RFIDQEAFKI 61 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS- 121 HGI++ FLKDKP+F+ + + F ++ +E + H+A FD+GFI+ E + +N+ + + Sbjct: 62 HGISNNFLKDKPTFAQVADKLITFISQ--SELVIHHAPFDIGFIDYEFKLLNRSMISKTF 119 Query: 122 -RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ DTL +AR+ P RN L++LC RY I HR+KHGALLD+ +L+++Y+ M G + Sbjct: 120 VQVTDTLLLARKIFPGKRNSLDALCNRYHIKNIHRTKHGALLDAKILAEIYLIMTGGQTS 179 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 INF T E ++ K L DK +EL EH Sbjct: 180 INFNL-TQESNIEQKYKGKNIYFPLSHEDKLKVIYANNKELSEH 222 >gi|238799153|ref|ZP_04642606.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969] gi|238716994|gb|EEQ08857.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969] Length = 259 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 82/187 (43%), Positives = 121/187 (64%), Gaps = 11/187 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+F+ I EF +F + AE I HNA FD+GF++ E + + +D P + Sbjct: 71 HGISDEFLADKPTFAEITPEFLEFI--RGAELIIHNAAFDIGFMDYEFRMLQQDIPKTET 128 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 129 FCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188 Query: 180 QINFGFK 186 ++F + Sbjct: 189 SLSFSME 195 >gi|119775015|ref|YP_927755.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119767515|gb|ABM00086.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 242 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/249 (37%), Positives = 140/249 (56%), Gaps = 24/249 (9%) Query: 2 IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+I+ D ETTG++ RIIEIG VE+++ T RTF ++ P G+ Sbjct: 3 IISNAERQIILDTETTGMNQGAGAVYLGHRIIEIGCVEVVNRRLTGRTFHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-IN 114 EA+ +HGIT++ + +P F I F DF + AE +AHNA FD+ FIN E + Sbjct: 62 DEEAIAVHGITNDRVAGEPRFHEIVGGFLDFI--RGAELVAHNASFDMSFINHEFSMLVP 119 Query: 115 KDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + P D ++D+L+IA+ HP +N+L++LCKRYGI + R+ HGALLD+ +L+DVY+ Sbjct: 120 QGPKVEDICTVLDSLAIAKFLHPGQKNNLDALCKRYGIDNTRRTYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQT 230 M G Q F +E +E+ I L ++P R T +EL H+K + Sbjct: 180 VMT--GGQTKFNLHADEG---SQEQG---GIIRLDSNRPSLKVVRATADELGNHEKRLDL 231 Query: 231 LGKNA--IW 237 +GK+ +W Sbjct: 232 VGKSGKCLW 240 >gi|288940138|ref|YP_003442378.1| DNA polymerase III subunit epsilon [Allochromatium vinosum DSM 180] gi|288895510|gb|ADC61346.1| DNA polymerase III, epsilon subunit [Allochromatium vinosum DSM 180] Length = 240 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 94/236 (39%), Positives = 130/236 (55%), Gaps = 14/236 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VEL+D T R F +L P R+ EA +HGI Sbjct: 1 MRQIVLDTETTGLEPREGHRIIEIGCVELVDRRPTGRNFHEYLNPE-RQIDAEAEAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE--LQRINKDP--LDPS 121 ++ FL DKP F+ ++ + AE I HNA FDVGF++ E L R + P D Sbjct: 60 SNAFLADKPRFAERAERLVEYL--RGAELIIHNAAFDVGFLDHEFGLWRGAEAPRIADLC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + D+L +AR+ HP RN L++LCKRY I SHR+ HGALLD+ +L+DVY+ M G + Sbjct: 118 TVTDSLLMARKLHPGQRNGLDALCKRYAIDNSHRTLHGALLDAEILADVYLAMTGGQVSL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 G + E + +R + R T+ EL+ H + +AIW Sbjct: 178 YLGGEGMNGSGVGEGPVHRGRLD-PERPRLRVVRATQTELEAHRVRL-----DAIW 227 >gi|332184121|gb|AEE26375.1| DNA polymerase III epsilon subunit [Francisella cf. novicida 3523] Length = 230 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 85/186 (45%), Positives = 113/186 (60%), Gaps = 11/186 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRVTGNTLHFYCNPNYEVEAG-ALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121 +EFL DKP F E DF + AE I HNA FDV FIN EL + + + + Sbjct: 62 NEFLADKPLFEDKVDEMIDFL--KGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177 Query: 182 NFGFKT 187 N +T Sbjct: 178 NLSLQT 183 >gi|56416800|ref|YP_153874.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St. Maries] gi|222475164|ref|YP_002563580.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Florida] gi|254995002|ref|ZP_05277192.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Mississippi] gi|255003148|ref|ZP_05278112.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Puerto Rico] gi|255004274|ref|ZP_05279075.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Virginia] gi|56388032|gb|AAV86619.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St. Maries] gi|222419301|gb|ACM49324.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Florida] Length = 232 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 144/242 (59%), Gaps = 15/242 (6%) Query: 6 KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R+IV D ETTGLD+ + DRIIEIG VEL+D+ T + F ++ P R A K+HG Sbjct: 2 RTREIVLDTETTGLDAASGDRIIEIGCVELVDFVMTGQVFHKYINPE-RDIPIAATKIHG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRI 123 IT + +K+ P F+ + +F +F Q++ + HNA FD+ FI E++RI K L +P + Sbjct: 61 ITTDMVKNMPKFAEMADQFLNFV--QDSVLVIHNAGFDLKFIETEMERIGKTKLYNP--V 116 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +ARRK P L++LCKR+ I+ S R HGAL D+ LL+ VY++ + GG Q + Sbjct: 117 VDTLEVARRKFPGMPASLDALCKRFDISTSSRRFHGALKDATLLARVYVE-LCGGIQRSL 175 Query: 184 GFKTNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 GF + + + + K + P + P I+ EL H ++I + K+ IW+ Y+ Sbjct: 176 GFVSGDLTQSTRASKASKPVLQ-----APRAFTISDLELKLHAESISKM-KDPIWNMYLK 229 Query: 243 SN 244 ++ Sbjct: 230 TS 231 >gi|240950342|ref|ZP_04754612.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305] gi|240295153|gb|EER45972.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305] Length = 253 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/216 (40%), Positives = 129/216 (59%), Gaps = 21/216 (9%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M+ + R++V D ETTG++ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MLEQEIHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP+F+ I EF F + AE + HNA FDVGF++ E + Sbjct: 60 EEEAIKVHGITNEFLQDKPTFAEIVDEFVAFI--KGAELVIHNAPFDVGFMDHEFSFLAN 117 Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCTVTDSLALARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208 MM GG QI +EE P + LL+ Sbjct: 178 -MMTGG-QIAL--------LAEEEHDENPQVDLLEE 203 >gi|165976701|ref|YP_001652294.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876802|gb|ABY69850.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 257 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 92/254 (36%), Positives = 142/254 (55%), Gaps = 22/254 (8%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+D+P F+ + EF +F + AE I HNA FDV F++ E + Sbjct: 60 EEEAIKVHGITNEFLQDRPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117 Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 MM GG G ED E + I+ + + +++EE H++ ++ Sbjct: 178 -MMTGGQLALLG---EEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLK 233 Query: 230 TLGK----NAIWDR 239 + K N IW R Sbjct: 234 LIDKKSKGNCIWMR 247 >gi|261820459|ref|YP_003258565.1| DNA polymerase III subunit epsilon [Pectobacterium wasabiae WPP163] gi|261604472|gb|ACX86958.1| DNA polymerase III, epsilon subunit [Pectobacterium wasabiae WPP163] Length = 245 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 144/243 (59%), Gaps = 20/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+++ I +F DF + AE + HNA FD+GF++ E + +N+D P + Sbjct: 66 HGISDEFLADKPTYADIADDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKITDSLFMARKIFPGKRNSLDALCDRYLIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD--EHDKTIQTL---GKN 234 + F D +++ + I + R + T + +E++ H++ + + G + Sbjct: 184 SLTFSM----DGETQQQNENSETIQRIVRPQSALTVLYADEVELLAHEQRLDLIAKKGGS 239 Query: 235 AIW 237 +W Sbjct: 240 CLW 242 >gi|332162776|ref|YP_004299353.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606882|emb|CBY28380.1| DNA polymerase III epsilon subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|325667006|gb|ADZ43650.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861137|emb|CBX71400.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica W22703] Length = 260 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 124/192 (64%), Gaps = 11/192 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+F+ I EF +F + AE + HNA FD+GF++ E + + +D P + Sbjct: 66 HGISDEFLADKPTFADIAPEFIEFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCTITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDR 191 ++F + ++ + Sbjct: 184 SLSFSMEGDQSQ 195 >gi|251788641|ref|YP_003003362.1| DNA polymerase III subunit epsilon [Dickeya zeae Ech1591] gi|247537262|gb|ACT05883.1| DNA polymerase III, epsilon subunit [Dickeya zeae Ech1591] Length = 244 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 90/241 (37%), Positives = 142/241 (58%), Gaps = 16/241 (6%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYLRPD-RLVDPEAYNI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+++ + +F DF + AE + HNA FD+GF++ E + + +D P + Sbjct: 66 HGISDEFLVDKPTYADVADDFLDFI--RGAELVIHNASFDIGFMDYEFRLLGRDIPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + E + + +T+ IS + + EEL H++ + + G + + Sbjct: 184 SLAFSME-GEGQQQAVQTETIQRISRPASALAVLY-ASDEELIAHEQRLDLIMKKGGSCL 241 Query: 237 W 237 W Sbjct: 242 W 242 >gi|254452968|ref|ZP_05066405.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 238] gi|198267374|gb|EDY91644.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 238] Length = 242 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 143/249 (57%), Gaps = 24/249 (9%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + S+ DRI+EIGA+EL ++ T RT+ ++ P R A +HGI Sbjct: 1 MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPK-RTMPAGAFGIHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F+ I F DF + ++ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQTPTAGQVLLRDKPVFAEIAQAFVDFIGD--SKLVIHNAAFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +N+ L + +DTL IAR+K P S L++LC+R+GI S+R+ HGALLDS +L++VY+ Sbjct: 118 VNRPLLPMGQSLDTLGIARKKFPGSPASLDALCRRFGIDNSNRTLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQ--INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 + ++GG Q + G +T + + P + R PL +I E D H I+ Sbjct: 178 E-LIGGRQPDLVMGDQTGSNAKNGGGAEWRPQL----RTTPLAPKIKAAEADAHAAFIKL 232 Query: 231 LGKNAIWDR 239 LG NA+W++ Sbjct: 233 LGDNALWNK 241 >gi|197335831|ref|YP_002156764.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11] gi|197317321|gb|ACH66768.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11] Length = 223 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 10/216 (4%) Query: 25 RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84 RI+EIGAVE+++ T F V++ P+ R EA+ +HGITDEFL DKP + I EF Sbjct: 13 RIVEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAIDVHGITDEFLYDKPEYKDIHDEFL 71 Query: 85 DFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSRIIDTLSIARRKHPSSRNDL 141 +F + AE +AHNA FDVGF++ E ++NK +I DTL++A++ P RN+L Sbjct: 72 EFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIGTTDQYCKITDTLAMAKKIFPGKRNNL 129 Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVP 201 + LC+RYGI SHR+ HGALLD+ +L+DVY+ M G + ++F N +E K + Sbjct: 130 DVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLSFSSGDNSSDSDEETIKRLN 189 Query: 202 NISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + R R T +EL+ H+K + +G +W Sbjct: 190 S----GRKGLKVLRATADELEAHEKRLDIVGDACLW 221 >gi|271501671|ref|YP_003334697.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech586] gi|270345226|gb|ACZ77991.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech586] Length = 244 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 144/243 (59%), Gaps = 20/243 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYLRPD-RLIDPEAYNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+++ + +F DF + AE + HNA FD+GF++ E + + +D P + Sbjct: 66 HGISDEFLADKPTYAEVADDFIDFI--RGAELVIHNASFDIGFMDYEFRLLGRDIPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDKTIQTL---GKN 234 + F + E + + +T+ IS R T + + +EL H++ + + G + Sbjct: 184 SLAFSME-GESQQQTVQAETIQRIS---RPTSALTVLYASDDELVAHEQRLDLIMKKGGS 239 Query: 235 AIW 237 +W Sbjct: 240 CLW 242 >gi|187929152|ref|YP_001899639.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J] gi|187726042|gb|ACD27207.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12J] Length = 242 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 111/174 (63%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL++ DR+IEIG VE+++ T R ++ P R+ A+ +HGI Sbjct: 1 MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T+EF+ DKP F+ I +E D+ Q AE I HNA FD+GF++ E QR+ S Sbjct: 60 TNEFVADKPKFAEIVNEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRLGLPAFREHLSGH 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL AR+ P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG 171 >gi|299066469|emb|CBJ37657.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum CMR15] Length = 242 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 80/176 (45%), Positives = 112/176 (63%), Gaps = 10/176 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R + P R+ A+ +HGI Sbjct: 1 MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYFNPE-RQIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPS 121 T+EF+ DKP F+ + E D+ Q AE I HNA FD+GF++ E +R+ ++ LD Sbjct: 60 TNEFVADKPKFAEVVDEIRDYV--QGAEAIIHNAAFDLGFLDMEFKRLGLPSFREHLDGH 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL ARR P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G Sbjct: 118 --IDTLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG 171 >gi|294085203|ref|YP_003551963.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum marinum IMCC1322] gi|292664778|gb|ADE39879.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Candidatus Puniceispirillum marinum IMCC1322] Length = 255 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 115/180 (63%), Gaps = 5/180 (2%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTG++ ++ RIIEIG +ELL + T +++ P R+ A+K+HG+ Sbjct: 1 MREIALDTETTGINPRDGHRIIEIGCLELLHHLPTGNKLHIYINPE-REIDEGAVKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T FL DKP F+ I EF F + + HNA FD+GF+NAEL R+++ L R +D Sbjct: 60 TSAFLADKPLFADIVDEFLAFIGGD--QMVIHNASFDMGFLNAELARLDRPVLPMDRAVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR+K P ++ +L++LC+R+ I HR HGAL+D+ LL+ VYI+++ GG Q G Sbjct: 118 TLMMARKKFPGAQANLDALCRRFEIDNGHRDLHGALIDADLLASVYIELL-GGKQPGLGL 176 >gi|194290095|ref|YP_002006002.1| DNA polymerase III subunit epsilon [Cupriavidus taiwanensis LMG 19424] gi|193223930|emb|CAQ69939.1| DNA polymerase III epsilon subunit [Cupriavidus taiwanensis LMG 19424] Length = 246 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 93/239 (38%), Positives = 134/239 (56%), Gaps = 15/239 (6%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 MR+IV D ETTGL++ DR+IEIG VEL++ T R ++ P R A+ +HG Sbjct: 3 AMRQIVLDTETTGLNAATGDRLIEIGCVELMNRRLTGRHLHFYVNPE-RDIDEGAIAVHG 61 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSR 122 IT EFL DKP F+ + + +F Q+AE I HNA+FD+GF++ E Q + P Sbjct: 62 ITVEFLADKPRFAEVVHDIREFV--QDAELIIHNAQFDLGFLDMEFQLLGLPPFRQHVGN 119 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL AR+ P RN L++LC+R GI+ +HR HGALLD+ LL++VY+ M G Q + Sbjct: 120 VIDTLREARQMFPGKRNSLDALCERLGISNAHRKLHGALLDAELLAEVYLAMTRG--QDS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237 T + ++ T ++S L P+ R T EE H ++ L G +W Sbjct: 178 LVIDTLDGGSGQDGVVTTADLSRLT--LPVL-RATDEEQQAHLALLKGLDKASGGKTVW 233 >gi|58580665|ref|YP_199681.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622598|ref|YP_449970.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166710938|ref|ZP_02242145.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzicola BLS256] gi|58425259|gb|AAW74296.1| DNA polymerase III epsilon chain [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366538|dbj|BAE67696.1| DNA polymerase III epsilon chai [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 244 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 78/182 (42%), Positives = 114/182 (62%), Gaps = 7/182 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T EFL DKP F + EF + + AE I HNA FD+GF++ EL + ++ + Sbjct: 60 TLEFLADKPLFGEVVEEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FG 184 F Sbjct: 178 FA 179 >gi|294627921|ref|ZP_06706500.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666553|ref|ZP_06731794.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292597835|gb|EFF41993.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603697|gb|EFF47107.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 244 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 89/244 (36%), Positives = 133/244 (54%), Gaps = 22/244 (9%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T EFL DKP F + EF + + AE I HNA FD+GF++ EL + ++ + Sbjct: 60 TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLF-----TRITKEELDEHDKTIQTLGKN--- 234 F ++T ++ D L +T E H+ + L K Sbjct: 178 FASA-------DAGQQTDAASGMIAFDPALLLPRPRVAVTASESQAHEARLAQLRKKAGR 230 Query: 235 AIWD 238 A+WD Sbjct: 231 ALWD 234 >gi|54310042|ref|YP_131062.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9] gi|46914481|emb|CAG21260.1| Putative DNA polymerase III, epsilon subunit [Photobacterium profundum SS9] Length = 246 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 91/249 (36%), Positives = 141/249 (56%), Gaps = 22/249 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDR-----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IV D ETTG++ IIEIGAVE+++ T +F V++ P+ R Sbjct: 5 MKATNQRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTGNSFHVYIKPD-RTIE 63 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 EA+ +HGITDEFL KP + + EF +F + AE +AHNA FDVGF++ E +++N + Sbjct: 64 VEAIGVHGITDEFLIGKPVYKEVHDEFLEFI--KGAELVAHNAPFDVGFMDYEFRKLNPN 121 Query: 117 ---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 122 IGKTEDFCKVTDTLAMAKKIFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLL 181 Query: 174 MMVGGSQINFGFKTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G + + + EDR E K+ LLK + +E++ H+ + Sbjct: 182 MTGGQTSLALSAE-REDRDAGTESEIKRIASGRKLLK-----VLHASADEIEAHESRLDI 235 Query: 231 LGK--NAIW 237 + K + +W Sbjct: 236 ISKKSDVMW 244 >gi|120599049|ref|YP_963623.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1] gi|146292880|ref|YP_001183304.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32] gi|120559142|gb|ABM25069.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1] gi|145564570|gb|ABP75505.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32] gi|319426198|gb|ADV54272.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200] Length = 242 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 83/191 (43%), Positives = 119/191 (62%), Gaps = 12/191 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+IV D ETTG++ + RIIEIG VE+++ T R F ++ P G+ Sbjct: 3 IISNASRQIVLDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-N 114 PEA+ +HGITDE + ++P F I +F +F + AE +AHNA FDV F++ E + + Sbjct: 62 DPEAIAVHGITDERVANEPRFHQIAQQFIEFID--GAEIVAHNANFDVSFMDHEFSMLPS 119 Query: 115 KDP--LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 K P +D I+DTL IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 KGPKTMDICDILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINF 183 M G ++ N Sbjct: 180 IMTGGQTKFNL 190 >gi|117920808|ref|YP_870000.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3] gi|117613140|gb|ABK48594.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3] Length = 242 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 82/193 (42%), Positives = 117/193 (60%), Gaps = 16/193 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ + RIIEIG VE+++ T R F ++ P G+ Sbjct: 3 IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA+ +HGITDE + ++P F I EF DF + AE +AHNA FDV F++ E + Sbjct: 62 DPEAIAVHGITDERVANEPRFHQIAQEFIDFIS--GAEIVAHNANFDVSFMDHEFSLLQ- 118 Query: 116 DPLDP-----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 PL P I+D+L IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DV Sbjct: 119 -PLGPKTSEICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADV 177 Query: 171 YIKMMVGGSQINF 183 Y+ M G ++ N Sbjct: 178 YLAMTGGQTKFNL 190 >gi|304413386|ref|ZP_07394859.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola LSR1] gi|304284229|gb|EFL92622.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola LSR1] Length = 242 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 120/192 (62%), Gaps = 11/192 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTGL+ + R+IEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGLNKVGAHYQGHRVIEIGAVEMVNRRLTGNHFHVYLKPD-RLVDPEAYAI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+F+ F DF + A+ I HNA FD+GF++ E + + ++ Sbjct: 66 HGISDEFLADKPTFADTAKTFLDFI--RGADLIIHNASFDIGFLDYEFRLLEQNSAKIET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +AR+ P RN+LN+LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCTITDSLLLARQLFPGKRNNLNALCDRYHIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDR 191 ++F +T++ + Sbjct: 184 SLSFSMETDQQQ 195 >gi|254372921|ref|ZP_04988410.1| hypothetical protein FTCG_00492 [Francisella tularensis subsp. novicida GA99-3549] gi|151570648|gb|EDN36302.1| hypothetical protein FTCG_00492 [Francisella novicida GA99-3549] gi|332678259|gb|AEE87388.1| DNA polymerase III epsilon subunit [Francisella cf. novicida Fx1] Length = 230 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 85/186 (45%), Positives = 113/186 (60%), Gaps = 11/186 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNTLHFYCNPNYEVEAG-ALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELGLLRNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 RI+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 RIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177 Query: 182 NFGFKT 187 N +T Sbjct: 178 NLSLQT 183 >gi|24374102|ref|NP_718145.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] gi|24348589|gb|AAN55589.1|AE015697_11 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] Length = 242 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 81/191 (42%), Positives = 117/191 (61%), Gaps = 12/191 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ + RIIEIG VE+++ T R + ++ P G+ Sbjct: 3 IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112 PEA+ +HGITDE + ++P F I EF DF + AE +AHNA FDV F++ E LQ Sbjct: 62 DPEAIAVHGITDERVANEPRFHQIAQEFIDFIS--GAEIVAHNANFDVSFMDHEFSLLQP 119 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + D I+D+L IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 LGPKTRDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINF 183 M G ++ N Sbjct: 180 SMTGGQTKFNL 190 >gi|295691552|ref|YP_003595245.1| DNA polymerase III subunit epsilon [Caulobacter segnis ATCC 21756] gi|295433455|gb|ADG12627.1| DNA polymerase III, epsilon subunit [Caulobacter segnis ATCC 21756] Length = 237 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 134/237 (56%), Gaps = 13/237 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTG D K DR++EIG +E++D+ T R+F + C R EA K+HG++ Sbjct: 3 REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEY-CDPLRDMPAEAEKVHGLS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 FL KP F I F +F + +AHNA FD F+N EL++ + P+ R +DT Sbjct: 62 SAFLTGKPKFHEIADRFVEFVGDSVV--VAHNAAFDRQFVNFELEKCGRAPIREDRWVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LCKR+ I++ R KHGAL+D+HLL++VY+++ GG + + Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLESRDKHGALIDAHLLAEVYLELQ-GGKE-----R 173 Query: 187 TNEDRFFKEEKKTVPNI--SLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240 E E I S R +PL R T E + H + + L A+W ++ Sbjct: 174 ALELTHVVETLAVSAAIQGSYGSRPRPLAPRSTDAEREVHAAWVRKNLKDQALWIKF 230 >gi|307132179|ref|YP_003884195.1| DNA polymerase III subunit epsilon [Dickeya dadantii 3937] gi|306529708|gb|ADM99638.1| DNA polymerase III epsilon subunit [Dickeya dadantii 3937] Length = 244 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 80/187 (42%), Positives = 119/187 (63%), Gaps = 11/187 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYLRPD-RLVDPEAYNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP++ + +F DF + AE + HNA FD+GF++ E + + +D P + Sbjct: 66 HGISDEFLADKPTYGDVVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLKRDIPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCTITDSLQMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFK 186 + F + Sbjct: 184 SLAFSME 190 >gi|254374374|ref|ZP_04989856.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548] gi|151572094|gb|EDN37748.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548] Length = 238 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 85/186 (45%), Positives = 113/186 (60%), Gaps = 11/186 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T T + PN + AL +HG+T Sbjct: 11 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNTLHFYCNPNYEVEAG-ALAIHGLT 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + + Sbjct: 70 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELGLLRNNKYGTLEQNVA 127 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 RI+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 128 RIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 185 Query: 182 NFGFKT 187 N +T Sbjct: 186 NLSLQT 191 >gi|73541877|ref|YP_296397.1| DNA polymerase III subunit epsilon [Ralstonia eutropha JMP134] gi|72119290|gb|AAZ61553.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134] Length = 240 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 79/175 (45%), Positives = 111/175 (63%), Gaps = 6/175 (3%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 MR+IV D ETTGL++ DR+IEIG VEL++ T R ++ P R A+ +HG Sbjct: 3 AMRQIVLDTETTGLNAATGDRLIEIGCVELVNRRLTGRHLHFYVNPE-RDIDEGAIAVHG 61 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSR 122 IT EFL DKP F+ + +E DF Q+AE I HNA+FD+GF++ E + + P Sbjct: 62 ITVEFLADKPKFAEVVNEVRDFV--QDAELIIHNAQFDLGFLDMEFRLLGLPPFREHVGS 119 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +IDTL AR+ P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G Sbjct: 120 VIDTLLEARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG 174 >gi|188578361|ref|YP_001915290.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522813|gb|ACD60758.1| DNA polymerase III, epsilon subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 244 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 78/182 (42%), Positives = 114/182 (62%), Gaps = 7/182 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T EFL DKP F + EF + + AE I HNA FD+GF++ EL + ++ + Sbjct: 60 TLEFLADKPLFGDVVEEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FG 184 F Sbjct: 178 FA 179 >gi|113970494|ref|YP_734287.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4] gi|114047729|ref|YP_738279.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7] gi|113885178|gb|ABI39230.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4] gi|113889171|gb|ABI43222.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7] Length = 242 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 81/191 (42%), Positives = 117/191 (61%), Gaps = 12/191 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ + RIIEIG VE+++ T R + ++ P G+ Sbjct: 3 IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112 PEA+ +HGITDE + ++P F I EF DF + AE +AHNA FDV F++ E LQ Sbjct: 62 DPEAIAVHGITDERVANEPRFHQIAQEFIDFIS--GAEIVAHNANFDVSFMDHEFSLLQP 119 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + D I+D+L IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 LGPKTSDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINF 183 M G ++ N Sbjct: 180 AMTGGQTKFNL 190 >gi|78485275|ref|YP_391200.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena XCL-2] gi|78363561|gb|ABB41526.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena XCL-2] Length = 231 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 138/233 (59%), Gaps = 16/233 (6%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTG D KN D+IIEIGAVEL+ T+ + ++ P R +A+++HGI Sbjct: 1 MRQILLDTETTGFDPKNGDKIIEIGAVELIKRKLTHNNYHQYIQPE-RDVPIDAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL----DPS 121 T+EFL KP F+ + +F ++ AE I HNA FDVGFIN EL ++ + D Sbjct: 60 TNEFLVGKPIFADVVDDFMEYV--AGAELIIHNAPFDVGFINQELSQLPNNKWGKIEDHC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I D+L +AR+ +P RN L++LCKR+ I S+R+ HGALLDS +L+DVY+ M G + + Sbjct: 118 TITDSLKMARKAYPGQRNSLDALCKRFLIDNSNRTLHGALLDSEILADVYLAMTGGQTAL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGK 233 +E+ + + ++L + PL + + EEL H+ +Q + + Sbjct: 178 ---ILADEEGSSSDASR----VNLNTQRAPLKVLKASAEELAAHNGKLQQISE 223 >gi|74317680|ref|YP_315420.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC 25259] gi|74057175|gb|AAZ97615.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans ATCC 25259] Length = 232 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 6/183 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGLD ++ RIIE+ AVE+++ T ++ P+ R A+++HGI Sbjct: 1 MRQIILDTETTGLDPAQGHRIIEVAAVEMVNRRLTGNHLHRYVNPD-RDIDAGAMQVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T EFL+DKP F I EF DF + AE I HNA FDVGF+N EL+ + L + Sbjct: 60 TPEFLQDKPRFGDIAREFVDFID--GAELIIHNAPFDVGFLNMELRLLGMPLLATCCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL++A+ HP RN+L++LCKRY + + R+ HGALLD LL+ VY+ + G ++ Sbjct: 118 TDTLAMAKALHPGQRNNLDALCKRYAVDNTARTLHGALLDCELLAAVYLALTRGQESLSI 177 Query: 184 GFK 186 G + Sbjct: 178 GLE 180 >gi|253996734|ref|YP_003048798.1| DNA polymerase III subunit epsilon [Methylotenera mobilis JLW8] gi|253983413|gb|ACT48271.1| DNA polymerase III, epsilon subunit [Methylotenera mobilis JLW8] Length = 227 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 133/238 (55%), Gaps = 18/238 (7%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL ++ R+IEI AVE+++ T F +L P+ R P A ++HGI Sbjct: 1 MRQIFLDTETTGLYHAQGHRVIEIAAVEVVNRRLTKHHFHYYLNPD-RDIDPGAQEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 + EFL+DKP F+ I +E F +AE I HNA FDVGF+N EL I + ++ +++ Sbjct: 60 SLEFLQDKPRFADIANELITFI--ADAELIMHNAPFDVGFLNCELGLIGQKKVEEISAKV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL IA+ P RN+L++LCK +GI S R+ HGALLD+ LL+DVY+ M G + Sbjct: 118 TDTLKIAKEMRPGQRNNLDALCKYFGIDNSKRTLHGALLDAELLADVYMAMTRGQDSLMI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHDKTIQTLGK--NAIWD 238 E V +S PL ++ EL +H+ + L K N +W+ Sbjct: 178 ALDQP-----SHETVEVSAVS----HAPLQVKLANSTELADHEAYLAGLAKSGNCVWN 226 >gi|304320447|ref|YP_003854090.1| putative DNA polymerase III subunit epsilon and related 3'-5'exonuclease [Parvularcula bermudensis HTCC2503] gi|303299349|gb|ADM08948.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Parvularcula bermudensis HTCC2503] Length = 245 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/245 (38%), Positives = 141/245 (57%), Gaps = 19/245 (7%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHG 64 MR+IVFD ETTGLD R++EIGAVE+++ + T RTF V++ P ++ PEA ++H Sbjct: 1 MRQIVFDTETTGLDPLDGHRVVEIGAVEMVNGALTGRTFHVYVNPE--RDMPEAAYRVHK 58 Query: 65 ITDEFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119 ++ +FL DKP F +I F+ F + A +AHNA FD F+ L I P + Sbjct: 59 LSSQFLADKPIFKDPAIGQAFYQFC--EGAVLVAHNASFDCKFMQHHLDEIGL-PWAWGE 115 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYIKMMVG 177 P I+DTL IAR++ P S + L++LC+R+GI ++ R HGALLDS LL++VYI+ + G Sbjct: 116 PGDIVDTLQIARKRFPGSPSSLDALCQRFGIDLTEREAQGHGALLDSRLLAEVYIE-LTG 174 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 G Q F ++ + + + P +R P +T EE H I + K+ +W Sbjct: 175 GRQGGLIFDPDQSVGGRRKARGEPA---RQRPGPRPQLLTDEEHAAHAALIGEM-KDPLW 230 Query: 238 DRYIS 242 RY + Sbjct: 231 ARYTA 235 >gi|21241847|ref|NP_641429.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv. citri str. 306] gi|21107228|gb|AAM35965.1| DNA polymerase III epsilon chain [Xanthomonas axonopodis pv. citri str. 306] Length = 244 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/239 (37%), Positives = 133/239 (55%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T EFL DKP F + EF + + AE I HNA FD+GF++ EL + ++ + Sbjct: 60 TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + +LL +P +T E H+ + L K A+WD Sbjct: 178 FASADAGQQADAASGMIAFDPALLL-PRPRVA-VTASESQAHEARLAQLRKKAGRALWD 234 >gi|226939810|ref|YP_002794883.1| DnaQ [Laribacter hongkongensis HLHK9] gi|226714736|gb|ACO73874.1| DnaQ [Laribacter hongkongensis HLHK9] Length = 240 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 134/241 (55%), Gaps = 19/241 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+ D ETTGLD ++ R+IE+ +E+++ T R +++ P R P+A ++HGI+ Sbjct: 1 MRQIILDTETTGLDPQSHRLIEVAGLEMVNRKLTGRHLHLYIHPQ-RDIDPDAQRVHGIS 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRII 124 + L+ KP F ++ E DF ++AE I HNA FD+GF+NAE R+ +I Sbjct: 60 LDMLEGKPVFKAVAGEIADFL--RDAELIIHNAAFDIGFLNAEFARVGLPATQKVAGNVI 117 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P RN+L++LC R+ I S+R+ HGAL+D LL+DVY+ M G + Sbjct: 118 DTLAMAREIFPGKRNNLDALCDRFDIDRSNRTLHGALIDCELLADVYLAMTRGQESLEMA 177 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHDKTIQTLGKNA----IWDR 239 + ++ E T+ L KPL + E E H + ++ L K A +W Sbjct: 178 IEPDQG-----EGGTL----RLGNRKPLVVQKASEAECAVHSRYLELLDKKAGGPCVWRD 228 Query: 240 Y 240 Y Sbjct: 229 Y 229 >gi|58584800|ref|YP_198373.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419116|gb|AAW71131.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 231 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/241 (39%), Positives = 139/241 (57%), Gaps = 15/241 (6%) Query: 4 KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +NK+R+IV D ETTGLD RIIEIG VEL++ T + F +L P R + K+ Sbjct: 2 ENKLREIVLDTETTGLDIESGHRIIEIGCVELINRIPTGKVFHKYLNPE-RDIPYHSFKI 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++EFL+DKP FS + EF DF + I HNA+FD+ F+N EL ++N + R Sbjct: 61 HGISEEFLEDKPLFSDVVFEFLDFIS--GDILIIHNAEFDIKFLNMELGKLNARLISSDR 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+K S L++LCKR+ I++ +R HGAL D+ LL+ VY+++ G Sbjct: 119 VLDTLPLARKKFVGSPASLSALCKRFDISLENRELHGALTDAGLLAKVYVELTGGLQTFL 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWDRY 240 F + +D + V N++ + P + EE++EH K LGK N +W Sbjct: 179 FDNECKQDHNSAFIQHKVRNLT-CREHSP-----SNEEINEHRK---LLGKIDNPLWKER 229 Query: 241 I 241 I Sbjct: 230 I 230 >gi|330813374|ref|YP_004357613.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327486469|gb|AEA80874.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 225 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/169 (44%), Positives = 111/169 (65%), Gaps = 3/169 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M +I+ D ETTGL D+IIEI +EL + T F VF+ PN S A + HGI+ Sbjct: 1 MLEIILDTETTGLSFNTDKIIEIACIELENQIPTKNKFHVFINPN-MDISDGAYQTHGIS 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +FL+DKP F I EF +F ++++ + HNA FD+ F+N ELQ ++ +PL R++DT Sbjct: 60 RDFLRDKPVFKDIAKEFLNFI--KDSKLVIHNADFDLAFLNKELQELDLEPLSKDRVVDT 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L +AR+K P S+ L++LCKR+ I S R KH AL+D +LL++VYI+++ Sbjct: 118 LFLARQKFPGSQASLDALCKRFKINTSEREKHSALVDCNLLTEVYIELL 166 >gi|50122261|ref|YP_051428.1| DNA polymerase III subunit epsilon [Pectobacterium atrosepticum SCRI1043] gi|49612787|emb|CAG76237.1| DNA polymerase III, epsilon chain [Pectobacterium atrosepticum SCRI1043] Length = 245 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 123/192 (64%), Gaps = 11/192 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+++ + +F DF + AE + HNA FD+GF++ E + +N++ P + Sbjct: 66 HGISDEFLADKPTYADVADDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRNIPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKITDSLFMARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDR 191 + F + R Sbjct: 184 SLTFSMEGEAQR 195 >gi|296115251|ref|ZP_06833892.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter hansenii ATCC 23769] gi|295978352|gb|EFG85089.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter hansenii ATCC 23769] Length = 226 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 82/183 (44%), Positives = 112/183 (61%), Gaps = 5/183 (2%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTGLD N DR+IEI A+EL+ + R+F+V + P R EA ++HG T Sbjct: 3 RSILFDTETTGLDPLNGDRVIEIAALELIGDLPSGRSFRVLIDPE-RDVPEEASRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ +P F+ I EF F + E IAHNA FD GF+NAE +R L +R++DT Sbjct: 62 RADLEGQPKFAQIADEFLAFIGDD--ELIAHNAAFDFGFLNAEFRRAGLPELAMTRMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L IAR + P N L++LC+R+ I +S R+ H ALLD LL++VYI++ GG Q G Sbjct: 120 LQIARARFPGMPNSLDALCRRFSIDLSARTTHNALLDCKLLAEVYIELS-GGRQRGLGLS 178 Query: 187 TNE 189 E Sbjct: 179 VEE 181 >gi|190573031|ref|YP_001970876.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia K279a] gi|190010953|emb|CAQ44562.1| putative DNA polymerase III, epsilon chain [Stenotrophomonas maltophilia K279a] Length = 243 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 131/239 (54%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +RI+EIG VEL T + ++ P+ A ++ G+ Sbjct: 1 MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQ-GAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 T EFL DKP F+ I EF F + AE I HNA FD+GF++ EL + D Sbjct: 60 TLEFLDDKPEFAQIADEFLAFID--GAELIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL++AR + P RN L++LCKR G+ SHR+ HG LLD+ +L DVYI + G +I Sbjct: 118 VIDTLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238 FG ++ + LL R + + T EL+ H ++ L K +A+WD Sbjct: 178 FGLGDDDGGGAGAALQAFDTSKLLPRPRVV---ATPSELEAHAARLERLRKKAGHALWD 233 >gi|293392715|ref|ZP_06637034.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera DSM 4582] gi|291424832|gb|EFE98042.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera DSM 4582] Length = 245 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/244 (36%), Positives = 138/244 (56%), Gaps = 22/244 (9%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R + V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+F I EF +F + E + HNA FD+GF++ E + + +D P + Sbjct: 66 HGISDEFLADKPTFDQIADEFIEFI--RGGELVIHNAAFDIGFMDHEFRMLQQDIPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCAITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMT--GG 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDKTIQTL----GK 233 Q F+ D ++ + +I + R I + +E+ H+ + + G Sbjct: 182 QTTMAFQMEGD---TQQSDSTQDIQRIARPATSMKVIYASDDEVVAHESRLDLVAKKGGG 238 Query: 234 NAIW 237 N +W Sbjct: 239 NCLW 242 >gi|269958788|ref|YP_003328576.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str. Israel] gi|269848618|gb|ACZ49262.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str. Israel] Length = 232 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 143/242 (59%), Gaps = 15/242 (6%) Query: 6 KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R+IV D ETTGLD+ + DRIIEIG VEL+D+ T + F ++ P R A K+HG Sbjct: 2 RTREIVLDTETTGLDAASGDRIIEIGCVELVDFVMTGQVFHKYINPE-RDIPIAATKIHG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRI 123 IT + +K+ P F+ + +F +F Q++ + HNA FD+ FI E++RI K L +P + Sbjct: 61 ITTDMVKNMPKFAEMADQFLNFV--QDSVLVIHNAGFDLKFIETEMERIGKTKLYNP--V 116 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +ARRK P L++LCKR+ I+ S R HGAL D+ LL+ VY++ + GG Q + Sbjct: 117 VDTLEVARRKFPGMPASLDALCKRFDISTSSRRFHGALKDATLLARVYVE-LCGGIQRSL 175 Query: 184 GFKTNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 GF E ++ KE + P + P I+ E H ++I + K+ IW+ Y+ Sbjct: 176 GFVDGELNQSTKENNASKPVLQ-----APRTFTISDLEHKLHMESISKM-KDPIWNMYLK 229 Query: 243 SN 244 ++ Sbjct: 230 TS 231 >gi|113868435|ref|YP_726924.1| DNA polymerase III subunit epsilon [Ralstonia eutropha H16] gi|113527211|emb|CAJ93556.1| DNA polymerase III epsilon subunit [Ralstonia eutropha H16] Length = 246 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/175 (45%), Positives = 109/175 (62%), Gaps = 6/175 (3%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 MR+IV D ETTGL + DR+IEIG VEL++ T R ++ P R A+ +HG Sbjct: 3 AMRQIVLDTETTGLSAATGDRLIEIGCVELMNRRLTGRHLHFYVNPE-RDIDEGAIAVHG 61 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSR 122 IT EFL DKP F+ + ++ +F Q+AE I HNA FD+GF++ E Q + P Sbjct: 62 ITVEFLADKPRFAEVVNDIREFI--QDAELIIHNAPFDLGFLDMEFQLLGLPPFRQHAGN 119 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +IDTL AR+ P RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M G Sbjct: 120 VIDTLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRG 174 >gi|114328806|ref|YP_745963.1| DNA polymerase III subunit epsilon [Granulibacter bethesdensis CGDNIH1] gi|114316980|gb|ABI63040.1| DNA polymerase III, epsilon chain [Granulibacter bethesdensis CGDNIH1] Length = 225 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 107/179 (59%), Gaps = 5/179 (2%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++FD ETTG D DRI+EI A+EL + T TF + P R EA ++HG T Sbjct: 3 RSVLFDTETTGFDPLTGDRILEIAALELFNDLPTGNTFHTLVDPC-RDVPEEATRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L+ KP F+ I + FF IAHNA FD F+NAE R+ K LDP+R+IDT Sbjct: 62 AEMLRGKPLFADIVEDLLAFFGRD--PLIAHNAPFDFNFLNAEFARLGKPKLDPARMIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L +A+ + P N L++LC+R+ I +S R+ H ALLD LL++VYI+ + GG Q G Sbjct: 120 LVMAKARFPGMPNSLDALCRRFSIDLSQRTTHNALLDCKLLAEVYIE-LTGGRQRGLGL 177 >gi|308185776|ref|YP_003929907.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1] gi|308056286|gb|ADO08458.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1] Length = 243 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 113/178 (63%), Gaps = 11/178 (6%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T F ++L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+FS I EF D+ + AE + HNA FD+GF++ E ++N+ Sbjct: 66 HGIADEFLADKPAFSEIADEFLDYI--RGAELVIHNAPFDIGFMDYEFSKLNRGIEKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +I D+L++ARR P RN L++LC RY I + R+ HGALLD+ +L++V++ M G Sbjct: 124 FCKITDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAEILAEVFLTMTGG 181 >gi|241668417|ref|ZP_04755995.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876950|ref|ZP_05249660.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842971|gb|EET21385.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 230 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/189 (44%), Positives = 114/189 (60%), Gaps = 11/189 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPNYEVEAG-ALAVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-----S 121 +EFL DKPSF + DF + AE I HNA FDV FIN EL + + + Sbjct: 62 NEFLADKPSFEENVDQMIDFL--RGAEIIIHNAAFDVPFINWELGLLKNNKYGTLEQHVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYHIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177 Query: 182 NFGFKTNED 190 N +T ++ Sbjct: 178 NLVLQTTKN 186 >gi|270263405|ref|ZP_06191674.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13] gi|270042289|gb|EFA15384.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13] Length = 246 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/191 (43%), Positives = 118/191 (61%), Gaps = 13/191 (6%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R + V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+F I EF DF + E + HNA FD+GF++ E + + K P + Sbjct: 66 HGISDEFLADKPTFDQIADEFIDFI--RGGELVIHNASFDIGFMDHEFRMLQKGLPKTDT 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCGRYEIDNSKRTLHGALLDAEILAEVYLAMT--GG 181 Query: 180 QINFGFKTNED 190 Q + F+ D Sbjct: 182 QTSMAFQMEGD 192 >gi|330994285|ref|ZP_08318213.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1] gi|329758752|gb|EGG75268.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1] Length = 226 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 109/174 (62%), Gaps = 5/174 (2%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTGLD K DR+IEI A+EL+ T R F V + P R EA ++HG T Sbjct: 3 RTILFDTETTGLDPLKGDRVIEIAALELVGDLPTGRNFHVLIDPE-RDVPEEASRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ KP F+ + S F +F + IAHNA+FD GF+NAEL R + LD R++DT Sbjct: 62 RADLEGKPKFAEVASGFLEFVGDD--PLIAHNARFDFGFLNAELARAGQPVLDMGRMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L +AR + P N L++LC+R+ I +S R+ H ALLD LL+ VY++ + GG Q Sbjct: 120 LDMARERFPGMPNSLDALCRRFSIDLSERTTHNALLDCRLLAAVYLE-LTGGRQ 172 >gi|114777499|ref|ZP_01452496.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus ferrooxydans PV-1] gi|114552281|gb|EAU54783.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus ferrooxydans PV-1] Length = 300 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 98/249 (39%), Positives = 135/249 (54%), Gaps = 26/249 (10%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLD---YSKTNRTFQVFLCPNGRKNSP-EALK 61 MR I+ D ETTGL N DR++EIGA+E+L+ S F ++ P +N P E ++ Sbjct: 53 MRLIMLDTETTGLSPLNGDRMVEIGAIEVLNRKVLSGDKHVFHRYINPE--RNIPDEVVR 110 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDP 120 +HGI + +KD+P+F I EF DF + A + HNA FD+GFI EL RIN P + Sbjct: 111 IHGIDNAKVKDQPTFREIAQEFLDFI--EGATLVIHNAPFDLGFIMNEL-RINNFPEIGH 167 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++IDTL AR KHP RN+L++LC RY I HR HGALLDS LL++VY+ M GG Q Sbjct: 168 MQVIDTLVFAREKHPHQRNNLDALCDRYNIERGHRELHGALLDSELLAEVYLG-MTGGRQ 226 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK--------EELDEHDKTIQTL- 231 + G R +P S + +K RI + E+L H ++ + Sbjct: 227 FSLGMDAT--RLPASAFVQLPETSRGRSEKAETARIMRRKALHIPEEDLSAHHLMLKRIH 284 Query: 232 ---GKNAIW 237 G IW Sbjct: 285 KESGGQCIW 293 >gi|304395367|ref|ZP_07377250.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB] gi|304356661|gb|EFM21025.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB] Length = 243 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 113/178 (63%), Gaps = 11/178 (6%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T F ++L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+FS I EF D+ + AE + HNA FD+GF++ E ++N+ Sbjct: 66 HGIADEFLADKPAFSDIADEFLDYI--RGAELVIHNAPFDIGFMDYEFSKLNRGIEKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +I D+L++ARR P RN L++LC RY I + R+ HGALLD+ +L++V++ M G Sbjct: 124 FCKITDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAEILAEVFLTMTGG 181 >gi|146329568|ref|YP_001209798.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus VCS1703A] gi|146233038|gb|ABQ14016.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus VCS1703A] Length = 233 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 80/185 (43%), Positives = 114/185 (61%), Gaps = 10/185 (5%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R ++FD ETTG++ ++D RIIEIG VEL+D T F +L P + P+A K Sbjct: 4 RSVIFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPE-QPVDPQAFK 62 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--D 119 +HGI+DEFL DKP F + EF + + E +AHN FD FI+ ELQ D D Sbjct: 63 VHGISDEFLADKPFFKDVLPEFEAYLASAD-ELVAHNIAFDRQFIDRELQLAGCDYRLGD 121 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++D+L IAR K +RN+L++LCKR+G+ + R HGALLD+ LL++VY+K+ G S Sbjct: 122 KFTLVDSLKIAREKFAGARNNLDALCKRFGVDNTGRELHGALLDAQLLAEVYLKLTGGQS 181 Query: 180 QINFG 184 ++F Sbjct: 182 DLSFA 186 >gi|148555737|ref|YP_001263319.1| DNA polymerase III subunit epsilon [Sphingomonas wittichii RW1] gi|148500927|gb|ABQ69181.1| DNA polymerase III, epsilon subunit [Sphingomonas wittichii RW1] Length = 234 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 134/229 (58%), Gaps = 10/229 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGL+ + DR++EIG VEL++ +T +F + P R EA ++HG+ Sbjct: 1 MREIVFDTETTGLNPATGDRLVEIGCVELVNRVETGNSFHCYFNPQ-RSMPFEAEQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ FL DKP F+ E F +A +AHNA FD GF+N EL + +D R++D Sbjct: 60 SERFLSDKPLFADKVEELLAFIG--DAPLVAHNASFDFGFLNWELGACGRSIVDMGRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR+ HP +++ L++LC RYGI SHR KHGALLD+ LL+ +Y++ + GG QI Sbjct: 118 TLQIARKMHPGAKHSLDALCSRYGIDRSHRVKHGALLDAQLLAQLYVE-LTGGRQIGLSM 176 Query: 186 KTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 + TV ++ +P F ++EEL+ H ++ L Sbjct: 177 GEAVVEEVVVVATPRATVAASRTIRAIRPHFA--SEEELERHKAFVEKL 223 >gi|167010822|ref|ZP_02275753.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica FSC200] Length = 230 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 84/186 (45%), Positives = 112/186 (60%), Gaps = 11/186 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN K AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YKVEAGALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177 Query: 182 NFGFKT 187 N +T Sbjct: 178 NLSLQT 183 >gi|325578763|ref|ZP_08148810.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus parainfluenzae ATCC 33392] gi|325159587|gb|EGC71719.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus parainfluenzae ATCC 33392] Length = 253 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 78/184 (42%), Positives = 116/184 (63%), Gaps = 10/184 (5%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + IIEIGAVE+++ T F +++ P+ R P+A Sbjct: 3 NPDRQIVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPD-RLVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--P 117 +K+HGITDE L DKP F +I +F ++ + AE + HNA FDVGF++ E +++ D Sbjct: 62 IKVHGITDEMLADKPDFKTIAQDFIEYI--RGAELLIHNAPFDVGFMDYEFRKLGLDIKT 119 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN L++LC R GI S R+ HGALLD+ +L+DVY+ M G Sbjct: 120 TDICLVTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLSMTGG 179 Query: 178 GSQI 181 + + Sbjct: 180 QTSL 183 >gi|300715435|ref|YP_003740238.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661] gi|299061271|emb|CAX58380.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661] Length = 244 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 123/199 (61%), Gaps = 11/199 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T + V+L P+ R Sbjct: 1 MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNYHVYLKPD-RLV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+F+ I F ++ + AE + HNA FD+GF++ E ++ + Sbjct: 60 DPEAFGVHGIADEFLADKPTFADIADGFLEYID--GAELVIHNASFDIGFMDYEFAKLGR 117 Query: 116 D-PLDPS--RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + P + RI D+L++AR+ P RN L++LC RY I + R+ HGALLDS +L++V++ Sbjct: 118 NIPKTETFCRITDSLAMARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDSEILAEVFL 177 Query: 173 KMMVGGSQINFGFKTNEDR 191 M G + + F + ++ + Sbjct: 178 AMTGGQTLLKFSMEGDQQQ 196 >gi|307261758|ref|ZP_07543424.1| hypothetical protein appser12_13170 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868576|gb|EFN00387.1| hypothetical protein appser12_13170 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 248 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 137/245 (55%), Gaps = 22/245 (8%) Query: 10 IVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ EA+K+HG Sbjct: 1 MVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPS 121 IT+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + P + Sbjct: 60 ITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLGNPPPKTAEMC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ MM GG Sbjct: 118 SVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLA 176 Query: 182 NFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----N 234 G ED E + I+ + + +++EE H++ ++ + K N Sbjct: 177 LLG---EEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGN 233 Query: 235 AIWDR 239 IW R Sbjct: 234 CIWMR 238 >gi|169656602|ref|YP_001428489.2| DNA polymerase III, subunit epsilon [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954177|ref|ZP_06558798.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica URFT1] gi|295312420|ref|ZP_06803198.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica URFT1] gi|164551670|gb|ABU61533.2| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 238 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 84/186 (45%), Positives = 112/186 (60%), Gaps = 11/186 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN K AL +HG+T Sbjct: 11 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YKVEAGALAIHGLT 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + + Sbjct: 70 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 127 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 128 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 185 Query: 182 NFGFKT 187 N +T Sbjct: 186 NLSLQT 191 >gi|301155941|emb|CBW15411.1| DNA polymerase III epsilon subunit [Haemophilus parainfluenzae T3T1] Length = 253 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 78/184 (42%), Positives = 116/184 (63%), Gaps = 10/184 (5%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R+IV D ETTG++ + IIEIGAVE+++ T F +++ P+ R P+A Sbjct: 3 NPDRQIVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPD-RLVDPDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--P 117 +K+HGITDE L DKP F +I +F ++ + AE + HNA FDVGF++ E +++ D Sbjct: 62 IKVHGITDEMLADKPDFKTIAQDFIEYI--RGAELLIHNAPFDVGFMDYEFRKLGLDIKT 119 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D + DTL +AR+ +P RN L++LC R GI S R+ HGALLD+ +L+DVY+ M G Sbjct: 120 TDICLVTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLSMTGG 179 Query: 178 GSQI 181 + + Sbjct: 180 QTSL 183 >gi|89256347|ref|YP_513709.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica LVS] gi|115314792|ref|YP_763515.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|254367683|ref|ZP_04983704.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica 257] gi|254369321|ref|ZP_04985333.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp. holarctica FSC022] gi|89144178|emb|CAJ79442.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica LVS] gi|115129691|gb|ABI82878.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|134253494|gb|EBA52588.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica 257] gi|157122271|gb|EDO66411.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp. holarctica FSC022] Length = 238 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 84/186 (45%), Positives = 112/186 (60%), Gaps = 11/186 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN K AL +HG+T Sbjct: 11 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YKVEAGALAIHGLT 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + + Sbjct: 70 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 127 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 128 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 185 Query: 182 NFGFKT 187 N +T Sbjct: 186 NLSLQT 191 >gi|326405243|ref|YP_004285325.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301] gi|325052105|dbj|BAJ82443.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301] Length = 235 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 134/241 (55%), Gaps = 15/241 (6%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++FD ETTGL+ DR+IE+ A+EL + T + F + P R EA ++HG+T Sbjct: 3 RAVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTLIDPE-RDIPAEASRVHGMT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + KP F+ I +E +FF E +AHNA FD GF++AE RI + LD +R+IDT Sbjct: 62 SADVAGKPKFAEIAAELLEFFAEDP--LVAHNAPFDFGFLDAEFARIGRAALDRARMIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LC+R+ I +S R+ H ALLD LL++VY++ + GG Q Sbjct: 120 LALAKQRFPGMPNSLDALCRRFDIDLSARTTHNALLDCKLLAEVYVE-LTGGRQRGLDLA 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW--DRYISSN 244 E + P + +P+ + EL H+ I+ L K +W D+ ++ Sbjct: 179 AESTIRLVEYRSEGP-----RTPRPIVA--SAAELAAHEAFIEKL-KEPVWRLDQAAPTD 230 Query: 245 Q 245 Q Sbjct: 231 Q 231 >gi|307250533|ref|ZP_07532477.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857426|gb|EFM89538.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 248 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 137/245 (55%), Gaps = 22/245 (8%) Query: 10 IVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ EA+K+HG Sbjct: 1 MVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVEEEAIKVHG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPS 121 IT+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + P + Sbjct: 60 ITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ MM GG Sbjct: 118 SVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLA 176 Query: 182 NFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----N 234 G ED E + I+ + + +++EE H++ ++ + K N Sbjct: 177 LLG---EEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGN 233 Query: 235 AIWDR 239 IW R Sbjct: 234 CIWMR 238 >gi|24987377|pdb|1J53|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 8.5 gi|24987378|pdb|1J54|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 5.8 gi|119390109|pdb|2IDO|A Chain A, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading Complex gi|119390111|pdb|2IDO|C Chain C, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading Complex Length = 186 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 11/182 (6%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QI 181 + Sbjct: 184 SM 185 >gi|145579465|pdb|2GUI|A Chain A, Structure And Function Of Cyclized Versions Of The Proofread Exonuclease Subunit Of E. Coli Dna Polymerase Iii Length = 194 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 11/182 (6%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QI 181 + Sbjct: 187 SM 188 >gi|145589210|ref|YP_001155807.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047616|gb|ABP34243.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 236 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 112/174 (64%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+ + DR+IEIG VE++D T+RTF ++ P R A +HG+ Sbjct: 1 MRQVILDTETTGLNPATGDRVIEIGCVEVIDRRLTDRTFHYYINPE-RDIDAGAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 + EFL DKP F +I + +F + AE + HNA FD+GF++ E + + P S++ Sbjct: 60 SREFLSDKPVFGNIAEQLIEFVD--GAEIVIHNAAFDLGFLDNEFALLKRPPFRGLASKV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL AR+ P RN L++LC+R+ I+ HR+ HGALLD+ LL++VYI M G Sbjct: 118 IDTLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYIAMTRG 171 >gi|157369157|ref|YP_001477146.1| DNA polymerase III subunit epsilon [Serratia proteamaculans 568] gi|157320921|gb|ABV40018.1| DNA polymerase III, epsilon subunit [Serratia proteamaculans 568] Length = 246 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/191 (42%), Positives = 119/191 (62%), Gaps = 13/191 (6%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGA+E+++ T R + V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGALEVINRRPTGRHYHVYIKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+F+ I EF DF + E + HNA FD+GF++ E + + + P + Sbjct: 66 HGISDEFLADKPTFAQIADEFIDFI--RGGELVIHNAAFDIGFMDHEFRMLQQGIPKTDT 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMT--GG 181 Query: 180 QINFGFKTNED 190 Q + F+ D Sbjct: 182 QTSMAFQMEGD 192 >gi|307257347|ref|ZP_07539117.1| hypothetical protein appser10_13450 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864197|gb|EFM96110.1| hypothetical protein appser10_13450 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 248 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 137/245 (55%), Gaps = 22/245 (8%) Query: 10 IVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ EA+K+HG Sbjct: 1 MVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPS 121 IT+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + P + Sbjct: 60 ITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ MM GG Sbjct: 118 SVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLA 176 Query: 182 NFGFKTNEDRFFKEEKKT---VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----N 234 G ED E + I+ + + +++EE H++ ++ + K N Sbjct: 177 LLG---EEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGN 233 Query: 235 AIWDR 239 IW R Sbjct: 234 CIWMR 238 >gi|320538891|ref|ZP_08038567.1| DNA polymerase III epsilon subunit [Serratia symbiotica str. Tucson] gi|320031051|gb|EFW13054.1| DNA polymerase III epsilon subunit [Serratia symbiotica str. Tucson] Length = 247 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 116/184 (63%), Gaps = 11/184 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R + V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+F I EF DF + E + HNA FD+GF++ E + + + P + Sbjct: 66 HGISDEFLADKPTFDQIADEFLDFI--RGGELVIHNAAFDIGFMDHEFRLLQQGIPKTET 123 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINF 183 + F Sbjct: 184 SMTF 187 >gi|254419681|ref|ZP_05033405.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3] gi|196185858|gb|EDX80834.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3] Length = 241 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 133/235 (56%), Gaps = 7/235 (2%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG D K DR+IE+G +E+ D T RTF F+ P R P+A+++HGIT Sbjct: 3 REIVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPE-RLIPPDAIRVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +KD P F I + +F +A IAHNA FD FI+ E + + +R IDT Sbjct: 62 DDKVKDAPKFHEIADDLIEFIG--DAPMIAHNAGFDRNFIDFEYKLCGRPITGETRWIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +A+ + P N L++LCKR+ +++ R+ HGAL+D+ LL++VY+++ GG + Sbjct: 120 LKLAQARFPGMPNSLDALCKRFKVSLVERTLHGALIDARLLAEVYLELR-GGKERVLDL- 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240 ++ + VP + R +PL R + EE H + + L A+W+ Y Sbjct: 178 SSAPVAGRSAGVAVPTAAYGPRPQPLALRSSPEEQAAHIAFLAKALKDRALWEAY 232 >gi|288956846|ref|YP_003447187.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510] gi|288909154|dbj|BAI70643.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510] Length = 227 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 118/181 (65%), Gaps = 7/181 (3%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + R++EIG +EL+++ T F V+L P R PEA +HG+ Sbjct: 1 MREIVLDTETTGFKPEEGHRLVEIGCIELVNHLATGERFHVYLNPE-RDMPPEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RII 124 ++EFL DKP F+ + ++F F ++ + HNA FD+ F+N EL +I P+ P R I Sbjct: 60 SEEFLADKPLFNDVAADFVAFIG--DSPLVIHNAAFDMHFLNWEL-KIAGYPVMPKDRAI 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +AR+K P S L++LCKR+G+ S+R+ HGALLD+ LL++VY++++ GG Q Sbjct: 117 DTLLMARQKFPGSPATLDALCKRFGVDNSNRTLHGALLDAQLLAEVYLELL-GGRQTGLS 175 Query: 185 F 185 F Sbjct: 176 F 176 >gi|71892007|ref|YP_277737.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796113|gb|AAZ40864.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 249 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 84/190 (44%), Positives = 123/190 (64%), Gaps = 14/190 (7%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N +R+IV D ETTG++ + R+IEIGAVE+++ T+ TF V+L PN R EA Sbjct: 4 NIIRQIVLDTETTGMNKFGPHYEGHRVIEIGAVEIINRHLTDNTFHVYLKPN-RMIDIEA 62 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDP 117 +++HGI+D+FLK+KP FS I +EF F + +E I HNA FD+GF+N EL+ + N Sbjct: 63 IQVHGISDQFLKNKPIFSEIINEFLTFI--RGSELIIHNASFDLGFLNQELRICKANSKK 120 Query: 118 LDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKMM 175 ++ +ID+L +AR+K P RN L++LC+RY I +R H ALLD+ LL++V++ M Sbjct: 121 IESYCTVIDSLKLARKKFPGQRNSLDALCERYSINNGNRRNLHSALLDARLLANVFLSM- 179 Query: 176 VGGSQINFGF 185 G QI F Sbjct: 180 -SGGQIKMKF 188 >gi|54114497|gb|AAV29882.1| NT02FT1179 [synthetic construct] Length = 230 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 11/186 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAG-ALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177 Query: 182 NFGFKT 187 N +T Sbjct: 178 NLSLQT 183 >gi|56707679|ref|YP_169575.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110670150|ref|YP_666707.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis FSC198] gi|134301975|ref|YP_001121944.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|224456748|ref|ZP_03665221.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254370187|ref|ZP_04986193.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|254874491|ref|ZP_05247201.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604171|emb|CAG45181.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320483|emb|CAL08564.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis FSC198] gi|134049752|gb|ABO46823.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|151568431|gb|EDN34085.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|254840490|gb|EET18926.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158843|gb|ADA78234.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis NE061598] Length = 230 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 11/186 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAG-ALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177 Query: 182 NFGFKT 187 N +T Sbjct: 178 NLSLQT 183 >gi|170726953|ref|YP_001760979.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908] gi|169812300|gb|ACA86884.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908] Length = 242 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 137/241 (56%), Gaps = 20/241 (8%) Query: 8 RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG++ RIIEIG VE+++ T R + ++ P + EA++ Sbjct: 9 RQIILDTETTGMNQGAGAIFLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QIIDEEAIE 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPL 118 +HGIT+EF+ KP F+ + F +F + AE +AHNA FDV F++ E LQ + Sbjct: 68 VHGITNEFVAHKPKFAEVAQSFIEFID--GAEIVAHNANFDVSFMDHEFSLLQPVGPKTA 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D I+DTL IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ MM GG Sbjct: 126 DICPILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILADVYL-MMTGG 184 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--I 236 Q F + ++ E + +S R+K T +EL H++ + + K+ I Sbjct: 185 -QTKFNLSSEKE---GSESGGIRRLS-QSRNKLKVITATADELAMHEERLNLVAKSGQCI 239 Query: 237 W 237 W Sbjct: 240 W 240 >gi|118497560|ref|YP_898610.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. novicida U112] gi|195536256|ref|ZP_03079263.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. novicida FTE] gi|118423466|gb|ABK89856.1| DNA polymerase III, epsilon subunit [Francisella novicida U112] gi|194372733|gb|EDX27444.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. novicida FTE] Length = 230 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 11/186 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAG-ALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177 Query: 182 NFGFKT 187 N +T Sbjct: 178 NLSLQT 183 >gi|291613978|ref|YP_003524135.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus ES-1] gi|291584090|gb|ADE11748.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus ES-1] Length = 233 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 80/185 (43%), Positives = 114/185 (61%), Gaps = 5/185 (2%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD K RIIE+ A+EL + RTF ++ P R+ A +HG+ Sbjct: 1 MRQIVLDTETTGLDPKQGHRIIEVAAIELNGRKVSERTFHRYINPE-REIDEGAAAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + L+D+P F+ + +F AE I HNA FD+GF+NAEL + PL + +ID Sbjct: 60 TLDRLQDEPKFAEVAPALLEFI--AGAELIIHNAPFDIGFLNAELA-LAGLPLLNNPVID 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ HP +N+LN+LC RY + SHR+ HGALLD+ LL++VY+ M G + Sbjct: 117 TLKVAKELHPGKKNNLNALCDRYQVDNSHRTLHGALLDTELLAEVYLGMTRGQESLLGEE 176 Query: 186 KTNED 190 ++ ED Sbjct: 177 RSEED 181 >gi|62261930|gb|AAX78030.1| unknown protein [synthetic construct] Length = 265 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 11/186 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 29 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAG-ALAIHGLT 87 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + + Sbjct: 88 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 145 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 146 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 203 Query: 182 NFGFKT 187 N +T Sbjct: 204 NLSLQT 209 >gi|208779358|ref|ZP_03246704.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG] gi|208745158|gb|EDZ91456.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG] Length = 238 Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 11/186 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 11 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAG-ALAIHGLT 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + + Sbjct: 70 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 127 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 128 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRAFHGALLDSELLADVYLAMT--GGQT 185 Query: 182 NFGFKT 187 N +T Sbjct: 186 NLSLQT 191 >gi|114563375|ref|YP_750888.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] gi|114334668|gb|ABI72050.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] Length = 242 Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 77/187 (41%), Positives = 119/187 (63%), Gaps = 18/187 (9%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+++ D ETTG++ RIIEIG VE+++ T RT+ ++ P G+ EA++ Sbjct: 9 RQVILDTETTGMNQAGGPIYVGHRIIEIGCVEVINRRLTGRTYHQYINP-GQAIDEEAIQ 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP- 120 +HGIT++ + ++P F I +F DF + AE +AHNA FDV F++ E ++N P+ P Sbjct: 68 VHGITNDRVANEPRFHQIAKDFIDFID--GAEIVAHNANFDVSFMDHEFSKLN--PIGPK 123 Query: 121 ----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 I+D+L+IA+R HP +N+L++LC+RYGI R+ HGALLD+ +L+DVY+ M Sbjct: 124 TKDICSILDSLAIAKRLHPGQKNNLDALCRRYGIDNGRRTYHGALLDAEILADVYLIMT- 182 Query: 177 GGSQINF 183 G QI F Sbjct: 183 -GGQIKF 188 >gi|317047021|ref|YP_004114669.1| DNA polymerase III subunit epsilon [Pantoea sp. At-9b] gi|316948638|gb|ADU68113.1| DNA polymerase III, epsilon subunit [Pantoea sp. At-9b] Length = 243 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 77/190 (40%), Positives = 117/190 (61%), Gaps = 11/190 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T F ++L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHIYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKPSFS I EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLADKPSFSDIADEFLDYI--RGAELVIHNASFDIGFMDYEFAMLKRDIGKTDT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC R I S R+ HGALLD+ +L++V++ + G + Sbjct: 124 FCQVTDSLAMARKMFPGKRNSLDALCSRLEIDNSKRTLHGALLDAEILAEVFLTLTGGQT 183 Query: 180 QINFGFKTNE 189 + F ++ + Sbjct: 184 SLAFSMESEQ 193 >gi|157962223|ref|YP_001502257.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC 700345] gi|157847223|gb|ABV87722.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC 700345] Length = 242 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 78/191 (40%), Positives = 117/191 (61%), Gaps = 12/191 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I + R+I+ D ETTG++ + RIIEIG VE+++ T R + ++ P + Sbjct: 3 IVSSAKRQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVVNRRLTGRHYHEYINPQ-QPI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112 EA+ +HGIT+EF+ DKP F + F +F + AE +AHNA FDV F++ E LQ Sbjct: 62 DEEAIAVHGITNEFVADKPKFHEVAQSFIEFID--GAEIVAHNANFDVSFMDHEFSMLQP 119 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + D +I+D+L+IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 LGPKTADICQILDSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINF 183 M G ++ N Sbjct: 180 LMTGGQTKFNL 190 >gi|153000540|ref|YP_001366221.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185] gi|160875177|ref|YP_001554493.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195] gi|217973494|ref|YP_002358245.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223] gi|151365158|gb|ABS08158.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185] gi|160860699|gb|ABX49233.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195] gi|217498629|gb|ACK46822.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223] gi|315267371|gb|ADT94224.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678] Length = 242 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 12/191 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ + RIIEIG VE+++ T R + ++ P G+ Sbjct: 3 IISNASRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112 PEA+ +HGITDE + +P F + +F +F + AE +AHNA FDV F++ E LQ Sbjct: 62 DPEAIAVHGITDERVSKEPRFHQVAQDFINFID--GAEIVAHNANFDVSFMDHEFSLLQP 119 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D +I+DTL IA+ HP +N+L++LCKRYG+ S R HGALLD+ +L+DVY+ Sbjct: 120 RGPKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINF 183 M G ++ N Sbjct: 180 IMTGGQTKFNL 190 >gi|167627857|ref|YP_001678357.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597858|gb|ABZ87856.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 230 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/189 (43%), Positives = 113/189 (59%), Gaps = 11/189 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPNYEVEAG-ALAVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-----S 121 +EFL DKP F + DF + AE I HNA FDV FIN EL + + + Sbjct: 62 NEFLADKPLFEENVDQMIDFL--RGAEIIIHNAAFDVPFINWELGLLKNNKYGTLEQHVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYHIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177 Query: 182 NFGFKTNED 190 N +T ++ Sbjct: 178 NLVLQTTKN 186 >gi|148261748|ref|YP_001235875.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5] gi|146403429|gb|ABQ31956.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5] Length = 225 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 128/231 (55%), Gaps = 13/231 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++FD ETTGL+ DR+IE+ A+EL + T + F + P R EA ++HG+T Sbjct: 3 RAVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTLIDPE-RDIPAEASRVHGMT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + KP F+ I +E +FF E +AHNA FD GF++AE RI + LD +R+IDT Sbjct: 62 SADVAGKPKFAEIAAELLEFFAEDP--LVAHNAPFDFGFLDAEFARIGRAALDRARMIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LC+R+ I S R+ H ALLD LL++VY++ + GG Q Sbjct: 120 LALAKQRFPGMPNSLDALCRRFDIDFSARTTHNALLDCKLLAEVYVE-LTGGRQRGLDLA 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E + P + +P+ + EL H+ I+ L K +W Sbjct: 179 AESTIRLVEYRSEGP-----RTPRPVVA--SAAELAAHEAFIEKL-KEPVW 221 >gi|157375130|ref|YP_001473730.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157317504|gb|ABV36602.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 242 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 137/241 (56%), Gaps = 20/241 (8%) Query: 8 RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+++ D ETTG++ RIIEIG VE+++ T R + ++ P + EA++ Sbjct: 9 RQVILDTETTGMNQGAGAIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QIIDEEAIE 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPL 118 +HGIT+E++ +KP F+ I F DF + AE +AHNA FDV F++ E LQ Sbjct: 68 VHGITNEYVANKPKFAEISQSFIDFID--GAEVVAHNASFDVNFMDHEFSLLQPRGPKTA 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D +I+DTL IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ MM GG Sbjct: 126 DICQILDTLDIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYL-MMTGG 184 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--I 236 F + D+ + E + S R R T +EL +H++ + + K+ I Sbjct: 185 QT---KFNLSGDKAGEGEGGIIRLNS--NRANLKVIRATADELTKHEERLDLVAKSGQCI 239 Query: 237 W 237 W Sbjct: 240 W 240 >gi|171463544|ref|YP_001797657.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193082|gb|ACB44043.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 236 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 137/242 (56%), Gaps = 24/242 (9%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+ + DRIIEIG +E++ T+RTF ++ P R A +HG+ Sbjct: 1 MRQVILDTETTGLNPATGDRIIEIGCIEMVGRRLTDRTFHYYINPE-RDIDAGAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 + EFL DKP F++I + +F + AE + HNA FD+GF++ E + + P S+I Sbjct: 60 SREFLSDKPIFANIVEQLIEFVD--GAEILIHNAAFDLGFLDNEFALLKRPPFRNLASKI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN- 182 DTL AR+ P RN L++LC+R+ I+ HR+ HGALLD+ LL++VY+ M G ++ Sbjct: 118 TDTLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYVAMTRGQEDLSI 177 Query: 183 --FGFKTNEDRFFKEEKKTVP-NISLLKRDKPLFTRITKEELDEHDKTIQTLG----KNA 235 + D K +P N+ LL + E+L+ H+K + + K++ Sbjct: 178 DLIDYTVGADS--SVHTKALPTNLKLLSA--------SNEDLESHEKILAEIAKASKKDS 227 Query: 236 IW 237 +W Sbjct: 228 VW 229 >gi|126174224|ref|YP_001050373.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155] gi|125997429|gb|ABN61504.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155] Length = 242 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 12/191 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ + RIIEIG VE+++ T R + ++ P G+ Sbjct: 3 IISNANRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112 PEA+ +HGITDE + +P F + +F +F + AE +AHNA FDV F++ E LQ Sbjct: 62 DPEAIAVHGITDERVSKEPRFHQVAQDFINFID--GAEIVAHNANFDVSFMDHEFSLLQP 119 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D +I+DTL IA+ HP +N+L++LCKRYG+ S R HGALLD+ +L+DVY+ Sbjct: 120 RGPKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINF 183 M G ++ N Sbjct: 180 IMTGGQTKFNL 190 >gi|289809670|ref|ZP_06540299.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 187 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 111/178 (62%), Gaps = 11/178 (6%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGG 184 >gi|304408611|ref|ZP_07390232.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|307305439|ref|ZP_07585187.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] gi|304352432|gb|EFM16829.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|306911742|gb|EFN42167.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] Length = 242 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 12/191 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ + RIIEIG VE+++ T R + ++ P G+ Sbjct: 3 IISNANRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQTI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112 PEA+ +HGITDE + +P F + +F +F + AE +AHNA FDV F++ E LQ Sbjct: 62 DPEAIAVHGITDERVSKEPRFHQVAQDFINFID--GAEIVAHNANFDVSFMDHEFSLLQP 119 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D +I+DTL IA+ HP +N+L++LCKRYG+ S R HGALLD+ +L+DVY+ Sbjct: 120 RGPKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINF 183 M G ++ N Sbjct: 180 IMTGGQTKFNL 190 >gi|212635110|ref|YP_002311635.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3] gi|212556594|gb|ACJ29048.1| DNA polymerase III, epsilon subunit [Shewanella piezotolerans WP3] Length = 242 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/243 (36%), Positives = 139/243 (57%), Gaps = 24/243 (9%) Query: 8 RKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG++ + RIIEIG VE+++ T R + ++ P + EA++ Sbjct: 9 RQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVVNRKLTGRHYHEYINPL-QPIDEEAIE 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPL 118 +HGIT+EF+ DKP F I F +F + AE +AHNA FDV F++ E LQ I Sbjct: 68 VHGITNEFVADKPKFHQIAQSFIEFID--GAEIVAHNANFDVSFMDHEFSMLQPIGPKTA 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + +I+D+L+IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M G Sbjct: 126 EICQILDSLAIAKYLHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILADVYLIMT--G 183 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDKTIQTLGKNA- 235 Q F + ++ + I+ L +D+ I + +EL H++ + + K+ Sbjct: 184 GQTKFNLSS------EKAGQEGGGINRLPKDRAKLKVISASADELTRHEERLDLVAKSGQ 237 Query: 236 -IW 237 IW Sbjct: 238 CIW 240 >gi|187931822|ref|YP_001891807.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187712731|gb|ACD31028.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 230 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/186 (44%), Positives = 111/186 (59%), Gaps = 11/186 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAG-ALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-----DPS 121 +EFL DKP F E +F + AE I HNA FDV FIN E + + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWEFSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMT--GGQT 177 Query: 182 NFGFKT 187 N +T Sbjct: 178 NLSLQT 183 >gi|124267443|ref|YP_001021447.1| DNA polymerase III subunit epsilon [Methylibium petroleiphilum PM1] gi|124260218|gb|ABM95212.1| DNA polymerase III, epsilon subunit [Methylibium petroleiphilum PM1] Length = 234 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/175 (46%), Positives = 112/175 (64%), Gaps = 10/175 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHG 64 R+I D ETTGL +N DRIIEIG VE+L S NR F +L P R+N +A+K+HG Sbjct: 3 RQIFLDTETTGLSPENGDRIIEIGCVEMLSRRLSGNNRHF--YLNPE-RRNHEDAVKIHG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSR 122 +TDEFL DKP F+ + E ++ AE I HNA FDVGF++AEL+R+ + Sbjct: 60 LTDEFLADKPKFAVVADELMEYL--AGAEIIIHNAAFDVGFLDAELKRLQRPRFAEQVGA 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + D+L++AR P N L++LCKR + + R+ HGALLD+ LL++VYI+M G Sbjct: 118 VTDSLTMAREMFPGKSNSLDALCKRLEVDNASRTLHGALLDAGLLAEVYIRMTRG 172 >gi|32490818|ref|NP_871072.1| hypothetical protein WGLp069 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166024|dbj|BAC24215.1| dnaQ [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 246 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 83/190 (43%), Positives = 118/190 (62%), Gaps = 11/190 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ N R+IV D ETTG++ RIIEIGA+E+++ T R F +L P+ R Sbjct: 1 MKINTERQIVLDTETTGMNKNGPHYYGHRIIEIGAIEMINRRLTGRCFHTYLKPD-RLVE 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 EA K+HGI+DEFL +P+F I +F +F + +E I HN+ FD+GFIN E+Q NK+ Sbjct: 60 IEAFKIHGISDEFLFFQPTFEEIMEKFINFI--KGSELIIHNSVFDIGFINNEIQLCNKN 117 Query: 117 PLDPS---RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + +IDTL +AR P RN+L++L RYGI + R HGALLD+ +LS+VY+ Sbjct: 118 LNNINYYCSVIDTLKLARNIFPGKRNNLDALSDRYGIDTTKRILHGALLDAEILSNVYLL 177 Query: 174 MMVGGSQINF 183 M G INF Sbjct: 178 MTGGQIPINF 187 >gi|319944001|ref|ZP_08018281.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia mirabilis ATCC 51599] gi|319742762|gb|EFV95169.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia mirabilis ATCC 51599] Length = 238 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 76/186 (40%), Positives = 116/186 (62%), Gaps = 6/186 (3%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++V D ETTGL+ SK RIIEIG VE+++ T +++ P R+ A +HG+T Sbjct: 6 RQVVLDTETTGLEASKGHRIIEIGCVEMVNRRITRNNLHLYINPE-REVDEGAAAVHGMT 64 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 + L+DKP+F+ I +F DF + AE I HNA FD GF++AEL R+ + + + Sbjct: 65 WDDLRDKPTFAQIVDQFLDFC--RGAEIIIHNASFDTGFLDAELARLGRGTFASHVACVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 D+L++AR ++P RN+L++LC+R + HR+ HGALLDS LL++VY+ M G + G Sbjct: 123 DSLAMARERYPGKRNNLDALCERLMVPNKHRTLHGALLDSELLAEVYLGMTRGQGSFDIG 182 Query: 185 FKTNED 190 +D Sbjct: 183 SSAEDD 188 >gi|254522635|ref|ZP_05134690.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] gi|219720226|gb|EED38751.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] Length = 243 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 130/239 (54%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +RI+EIG VEL T + ++ P+ A ++ G+ Sbjct: 1 MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQ-GAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T EFL DKP F+ I EF F + AE I HNA FD+GF++ EL + D Sbjct: 60 TLEFLDDKPGFAQIADEFLAFID--GAELIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL++AR + P RN L++LCKR G+ SHR+ HG LLD+ +L DVYI + G +I Sbjct: 118 VIDTLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238 FG + + LL R + + T EL+ H ++ L K +A+WD Sbjct: 178 FGLGDEDGGGAGAALQAFDASKLLPRPRVM---ATPSELEAHAARLERLRKKAGHALWD 233 >gi|149912883|ref|ZP_01901417.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b] gi|149813289|gb|EDM73115.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b] Length = 244 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 96/248 (38%), Positives = 143/248 (57%), Gaps = 21/248 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGA+EL ++ T RTF ++ P GR EA ++HGI Sbjct: 1 MREIVLDTETTGFDPEQGDRIVEIGALELYNHMPTGRTFHHYINP-GRGMPQEAFEVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F + + F +F NA+ + HNA FD+ F+NAEL Sbjct: 60 GPDLLDAPRPPRPGEITLRDKPPFDHVANAFIEFVG--NAKLVIHNAAFDMKFLNAELGW 117 Query: 113 INKDPLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + K PL P + IDTL+IAR+K P S L++LC+R+ I + R+ HGALLDS +L++VY Sbjct: 118 L-KLPLLPWEQAIDTLAIARQKFPGSPASLDALCRRFAIDNTARTLHGALLDSEILAEVY 176 Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 ++ ++GG Q +F + + + R +PL RIT+ E H I+T+ Sbjct: 177 LE-LIGGRQPDFALSAHPVAQSGSAETDI-GWRPKPRPQPLPPRITETEAAAHAAFIETM 234 Query: 232 GKNAIWDR 239 G ++W + Sbjct: 235 GDGSLWKK 242 >gi|167623805|ref|YP_001674099.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis HAW-EB4] gi|167353827|gb|ABZ76440.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis HAW-EB4] Length = 242 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 12/191 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I + R+I+ D ETTG++ + RIIEIG VE+++ T R + ++ P + Sbjct: 3 IVSSAKRQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QPI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112 EA+ +HGIT+EF+ DKP F I F +F + AE +AHNA FDV F++ E LQ Sbjct: 62 DEEAIAVHGITNEFVADKPKFHEIAQSFIEFID--GAEIVAHNANFDVSFMDHEFSMLQP 119 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D +I+D+L+IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 RGPKTADICQILDSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINF 183 M G ++ N Sbjct: 180 LMTGGQTKFNL 190 >gi|189183653|ref|YP_001937438.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Ikeda] gi|189180424|dbj|BAG40204.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Ikeda] Length = 222 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 82/172 (47%), Positives = 111/172 (64%), Gaps = 5/172 (2%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 RKIV D ET+GLD K RIIEIGAVEL D ++ TF ++ P R S EA K+HG+ Sbjct: 3 RKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPE-RDISKEAYKVHGL 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F I EF F + A+ I HNA FD+ F+N+EL RI K + + +ID Sbjct: 62 SRDFLSDKPKFREIVDEFLQFID--GAQLIMHNANFDMQFLNSELFRIRKSAIPNTCVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 TL++AR++ P R +L++LC ++ I S R HGAL D+ LL+ VY +MM G Sbjct: 120 TLTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRMMRG 171 >gi|148284671|ref|YP_001248761.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Boryong] gi|146740110|emb|CAM80283.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Boryong] Length = 222 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 82/172 (47%), Positives = 111/172 (64%), Gaps = 5/172 (2%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 RKIV D ET+GLD K RIIEIGAVEL D ++ TF ++ P R S EA K+HG+ Sbjct: 3 RKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPE-RDISKEAYKVHGL 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F I EF F + A+ I HNA FD+ F+N+EL RI K + + +ID Sbjct: 62 SRDFLSDKPKFREIVDEFLQFIDR--AQLIMHNANFDMQFLNSELFRIRKSAIPNTCVID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 TL++AR++ P R +L++LC ++ I S R HGAL D+ LL+ VY +MM G Sbjct: 120 TLTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRMMHG 171 >gi|319760362|ref|YP_004124300.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer str. BVAF] gi|318039076|gb|ADV33626.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer str. BVAF] Length = 251 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 81/185 (43%), Positives = 113/185 (61%), Gaps = 11/185 (5%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R ++ D ETTG++ + +IIEIGAVE+++ S T F V+L PN R EA Sbjct: 4 NTTRYVILDTETTGMNKFGIHYEGHKIIEIGAVEIINRSLTKNKFHVYLNPN-RPVDSEA 62 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KD 116 K+HGI+D FLKDKP FS I ++F F N + HNA FDVGF+N EL+ N K Sbjct: 63 FKIHGISDRFLKDKPVFSDISNKFLSFICGSN--LVIHNASFDVGFLNFELRETNLKYKT 120 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 IID+L +AR P RN L++LC+RY I IS R+ H AL+D+ +L+ V++ M Sbjct: 121 LETYCSIIDSLKLARNLFPGQRNSLDALCERYFIDISQRNLHNALIDAQILAYVFLAMTG 180 Query: 177 GGSQI 181 G +++ Sbjct: 181 GQTEM 185 >gi|296536098|ref|ZP_06898231.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC 49957] gi|296263574|gb|EFH10066.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC 49957] Length = 241 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 107/174 (61%), Gaps = 5/174 (2%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG D DR++E+ AVE+++ T R F + + P R EA K+HG T Sbjct: 3 RALVLDTETTGFDPLTGDRVLEVAAVEIVNLVPTGRHFHMLIDPE-RDVPEEATKVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L KP F+ I DF + IAHNA FD GF++ EL++ LD +R++DT Sbjct: 62 REMLIGKPKFAEIAPAMLDFLGDD--PIIAHNAPFDFGFLDWELKKAGHKALDRARMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L++A+++ P N L++LC+RYGI S R+ H ALLD LL+ VY+++M GG Q Sbjct: 120 LALAKKRFPGLPNSLDALCRRYGIDNSMRTAHNALLDVQLLAQVYLELM-GGKQ 172 >gi|89900967|ref|YP_523438.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118] gi|89345704|gb|ABD69907.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118] Length = 233 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 79/174 (45%), Positives = 105/174 (60%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL + DRIIEIG VEL T +L P GR++ +AL++HGI Sbjct: 1 MRQIFLDTETTGLSADTGDRIIEIGCVELFKRKLTGNNKHFYLNP-GRESHEDALRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T FLKDKP F ++ E + ++AE I HNA FD+GF+N EL + + + Sbjct: 60 TSAFLKDKPKFEAVADELLAYV--KDAEIIIHNAPFDLGFLNKELALLGRPRFKEFVGSV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 DTL +A+ P RN LN+LC R G+ S R+ HGALLD+ LL+DVYI + G Sbjct: 118 TDTLVMAKEMFPGKRNSLNALCDRLGVDNSGRALHGALLDAELLADVYINLTRG 171 >gi|329296922|ref|ZP_08254258.1| DNA polymerase III subunit epsilon [Plautia stali symbiont] Length = 237 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 79/204 (38%), Positives = 121/204 (59%), Gaps = 13/204 (6%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T F ++L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ I EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLADKPTFAQIADEFLDYI--RGAELVIHNASFDIGFMDYEFAMLQRDIGKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++A + P RN L++LC R+ I S R+ HGALLD+ +L++V++ M G Sbjct: 124 FCQITDSLAMASKMFPGKRNSLDALCNRFEIDNSKRTLHGALLDAGILAEVFLTMT--GC 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203 Q + F ++ + E + + I Sbjct: 182 QTSLAFSMEGEQSNQVEGEHIQRI 205 >gi|51473901|ref|YP_067658.1| DNA polymerase III subunit epsilon [Rickettsia typhi str. Wilmington] gi|81826284|sp|Q68W16|DPO3E_RICTY RecName: Full=DNA polymerase III subunit epsilon gi|51460213|gb|AAU04176.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 229 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 132/228 (57%), Gaps = 15/228 (6%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+I+ D ETTGLD + RIIEIGA+E+++ T + F ++ P R EA K+HGI Sbjct: 4 LREIILDTETTGLDPQQGHRIIEIGAIEMVNKVLTGKHFHCYINPE-RDMPFEAYKIHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 + EFLKDKP F +I ++F F ++ I HNA FD+ F+N EL + + L+ + Sbjct: 63 SGEFLKDKPLFHTIANDFLKFI--ADSTLIIHNAPFDIKFLNHELSLLKRTEIKFLELTN 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL +AR P +R L++LCKR+ + S R HGAL D+ LL++VY+ + GG Q Sbjct: 121 TIDTLVMARSMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVA-LTGGRQST 179 Query: 183 FGF--KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 F K NE TV I + K + + + TKEEL +H + I Sbjct: 180 FKMIDKPNEINNL-----TVKCIEVQKIKRSIVVKPTKEELQKHKEFI 222 >gi|307252915|ref|ZP_07534803.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859553|gb|EFM91578.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 239 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 17/224 (7%) Query: 26 IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85 IIEIGAVE+++ T RTF V++ P R+ EA+K+HGIT+EFL+DKP F+ + EF + Sbjct: 13 IIEIGAVEVINRRLTGRTFHVYIKPP-REVEEEAIKVHGITNEFLQDKPVFAEVADEFIE 71 Query: 86 FFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRIIDTLSIARRKHPSSRNDLN 142 F + AE I HNA FDV F++ E + P + + D+L++AR+ +P RN+L+ Sbjct: 72 FI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRNNLD 129 Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT--- 199 +LC R GI S R HGALLD+ +L+DV++ MM GG G ED E Sbjct: 130 ALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLALLG---EEDATATHENVADLG 185 Query: 200 VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 + I+ + + +++EE H++ ++ + K N IW R Sbjct: 186 LGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWMR 229 >gi|307069564|ref|YP_003878041.1| putative DNA polymerase III subunit epsilon [Candidatus Zinderia insecticola CARI] gi|306482824|gb|ADM89695.1| putative DNA polymerase III, epsilon subunit [Candidatus Zinderia insecticola CARI] Length = 222 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/171 (44%), Positives = 113/171 (66%), Gaps = 6/171 (3%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 ++I+ DIETTGL+ K DRIIEI +++L+ TN+ F ++ PN RK++ +ALK+HGI+ Sbjct: 3 KEIILDIETTGLNVKKGDRIIEIACIKILNRKITNKKFHEYINPN-RKSNKDALKIHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124 D+FLK+KP F I + +F +N I HN+ FD+ F+N E + + I+ Sbjct: 62 DKFLKNKPFFKDIIDKLINFI--KNYTIIIHNSSFDISFLNKEFKILKYKKFKYYVKNIV 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D+L IAR+K P+ +NDLNSLCKR+ I+I R H ALLD LLS +Y+ ++ Sbjct: 120 DSLKIARKKFPNKKNDLNSLCKRFKISIKKRKLHNALLDCILLSKIYLILI 170 >gi|307248305|ref|ZP_07530330.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307263945|ref|ZP_07545548.1| hypothetical protein appser13_13530 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306855175|gb|EFM87353.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306870707|gb|EFN02448.1| hypothetical protein appser13_13530 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 239 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 17/224 (7%) Query: 26 IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85 IIEIGAVE+++ T RTF V++ P R+ EA+K+HGIT+EFL+DKP F+ + EF + Sbjct: 13 IIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHGITNEFLQDKPVFAEVADEFIE 71 Query: 86 FFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRIIDTLSIARRKHPSSRNDLN 142 F + AE I HNA FDV F++ E + P + + D+L++AR+ +P RN+L+ Sbjct: 72 FI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRNNLD 129 Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT--- 199 +LC R GI S R HGALLD+ +L+DV++ MM GG G ED E Sbjct: 130 ALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLALLG---EEDATATHENVADLG 185 Query: 200 VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 + I+ + + +++EE H++ ++ + K N IW R Sbjct: 186 LGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWMR 229 >gi|224824456|ref|ZP_03697563.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224602949|gb|EEG09125.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 242 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 113/174 (64%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ S+ RIIE +E+++ T R+ +++ P R P+A ++HGI Sbjct: 1 MRQIILDTETTGLEPSQGHRIIEFAGLEMVNRKLTGRSLHLYIHPE-RDIDPDAERVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 + +FL DKP F+++ E DF ++AE I HNA FDVGF+NAE RI + + + + Sbjct: 60 SLDFLADKPRFAAVGPEIADFL--RDAELIIHNAPFDVGFLNAEFDRIGIERVSTLCASV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL +AR + P RN L++LC R+ I S+R+ HGAL+D LL +VY+ M G Sbjct: 118 IDTLVMARDQFPGKRNSLDALCDRFEIDRSNRTLHGALIDCELLGEVYLWMTRG 171 >gi|149927491|ref|ZP_01915745.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] gi|149823764|gb|EDM82990.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] Length = 240 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/176 (43%), Positives = 108/176 (61%), Gaps = 10/176 (5%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTGL+ + RIIEIG +E+ T+ F ++ P R+ A ++HGI Sbjct: 1 MRYVVLDTETTGLEVRQGHRIIEIGCIEVNGRQVTDHHFHQYINPE-REVDEGAFQVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPS 121 +DE L DKP F I +F DF Q + I HNA FD+GF++ EL+R+ D +D Sbjct: 60 SDEMLADKPKFKQIAKDFLDFV--QGSTLIIHNASFDIGFLDGELERLGLGKMADYVDG- 116 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +ID+L +AR P RN+L++LC R G+ +HR HGALLDS +L++VY+ M G Sbjct: 117 -VIDSLGMAREMFPGKRNNLDALCDRLGVNNAHRQLHGALLDSQILAEVYLAMTRG 171 >gi|127513039|ref|YP_001094236.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] gi|126638334|gb|ABO23977.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] Length = 242 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 142/249 (57%), Gaps = 24/249 (9%) Query: 2 IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ RIIEIG VE+++ T R F ++ P + Sbjct: 3 IISNAKRQVILDTETTGMNQGAGAVYFGHRIIEIGCVEVINRKLTGRHFHEYINPM-QAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114 EA+ +HGIT+EF+ DKP F+ I F +F + AE +AHNA FDV F++ E + Sbjct: 62 DEEAITVHGITNEFVADKPVFAQIAPAFLEFID--GAEIVAHNANFDVSFMDHEFSLLTP 119 Query: 115 KDP--LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + P D +++D+L IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 RGPKTTDICQVLDSLEIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI--TKEELDEHDKTIQT 230 M G ++ F+ + ++ +E I L ++P I + +EL+ H++ + Sbjct: 180 IMTGGQTK----FELSNEKPGQESG----GIIRLANNRPSLKVIGASADELNMHEQRLDL 231 Query: 231 LGKNA--IW 237 + K+ IW Sbjct: 232 VEKSGQCIW 240 >gi|91205177|ref|YP_537532.1| DNA polymerase III subunit epsilon [Rickettsia bellii RML369-C] gi|157827486|ref|YP_001496550.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389] gi|122425898|sp|Q1RJM1|DPO3E_RICBR RecName: Full=DNA polymerase III subunit epsilon gi|91068721|gb|ABE04443.1| DNA polymerase III epsilon chain [Rickettsia bellii RML369-C] gi|157802790|gb|ABV79513.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389] Length = 229 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 137/240 (57%), Gaps = 21/240 (8%) Query: 5 NKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + +R+I+ D ETTGLD K RI+EIGA+E+++ T R F +L P R EA ++H Sbjct: 2 SSLREIILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPE-RDMPFEAYRIH 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDP 120 GI+ EFLKDKP F +I +F +F +++ + HNA FDV F+N EL +R L+ Sbjct: 61 GISGEFLKDKPLFHTIADDFLEFI--ADSKLVIHNAPFDVKFLNHELSLLKRAEIKLLEL 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 IDTL +AR P S+ L++LCKR+ + S R HGAL D+ LL++VY++ + GG Q Sbjct: 119 EHAIDTLVMARSMFPGSKYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVE-LTGGRQ 177 Query: 181 INF-----GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 F K N + + + + NI ++K TKEEL +H + + + K A Sbjct: 178 SAFKMLDKAAKINNLSYNRLDSQAHRNIPVIKP--------TKEELQKHKEFLSRVLKQA 229 >gi|123441273|ref|YP_001005260.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088234|emb|CAL11023.1| DNA polymerase III, epsilon chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 238 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 74/175 (42%), Positives = 114/175 (65%), Gaps = 6/175 (3%) Query: 18 GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77 G+ + +IIEIGAVE+++ T R F V++ P+ R PEA +HGI+DEFL DKP+F+ Sbjct: 5 GVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGVHGISDEFLADKPTFA 63 Query: 78 SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS--RIIDTLSIARRKH 134 I EF +F + AE I HNA FD+GF++ E + + +D P + I D+L +ARR Sbjct: 64 DITPEFLEFI--RGAELIIHNAAFDIGFMDYEFRMLQQDIPKTETFCTITDSLLLARRLF 121 Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + ++F + ++ Sbjct: 122 PGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLSFSMEGDQ 176 >gi|157964873|ref|YP_001499697.1| DNA polymerase III subunit epsilon [Rickettsia massiliae MTU5] gi|157844649|gb|ABV85150.1| DNA polymerase III epsilon chain [Rickettsia massiliae MTU5] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 134/233 (57%), Gaps = 11/233 (4%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++HGI Sbjct: 4 LREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122 + EFLKDKP F +I +F +F ++ ++ I HNA FD+ F+N EL +R L+ + Sbjct: 63 SGEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTEIKLLELAN 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++M GG Q Sbjct: 121 TIDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGRQSA 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 F V N + + + TKEEL +H + + + K A Sbjct: 180 FKMVDKSAGINNLATNQVNNQT---EQATIVIKPTKEELQKHKEFLSRILKTA 229 >gi|15604567|ref|NP_221085.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str. Madrid E] gi|6685391|sp|Q9ZCJ9|DPO3E_RICPR RecName: Full=DNA polymerase III subunit epsilon gi|3861262|emb|CAA15161.1| DNA POLYMERASE III, EPSILON CHAIN (dnaQ) [Rickettsia prowazekii] gi|292572374|gb|ADE30289.1| DNA polymerase III epsilon chain [Rickettsia prowazekii Rp22] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 131/226 (57%), Gaps = 11/226 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+I+ D ETTGLD + RI+EIGA+E+++ T + F ++ P R EA K+HGI Sbjct: 4 LREIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGKHFHFYINPE-RDMPFEAYKIHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 + EFLKDKP F +I ++F F ++ I HNA FD+ F+N EL + + L+ + Sbjct: 63 SGEFLKDKPLFKTIANDFLKFI--ADSTLIIHNAPFDIKFLNHELSLLKRTEIKFLELTN 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL +AR P +R L++LCKR+ + S R HGAL D+ LL++VY+ + GG Q Sbjct: 121 TIDTLVMARNMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVA-LTGGRQST 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 F D K V ++ +KR + + TKEEL +H + I Sbjct: 180 FKMINKPDEINNLAVKCV-DVQQIKRG--IVVKPTKEELQKHKEFI 222 >gi|88606785|ref|YP_505310.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ] gi|88597848|gb|ABD43318.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ] Length = 244 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 74/171 (43%), Positives = 108/171 (63%), Gaps = 4/171 (2%) Query: 6 KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K+R+IV D ETTGLD+ DRIIEIG VEL+DY T R F ++ P R S A ++HG Sbjct: 2 KVREIVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPE-RDISVAATRVHG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT E L P F+ + E DF Q++ + HNA+FD+ F+ E++R++ + I+ Sbjct: 61 ITRESLIGMPKFAEVADELLDFL--QDSALVIHNARFDMRFLEVEIERLSNKRAITNTIV 118 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL +AR+K P L++LCKR+ I+ R HGAL D+ LL+ VY++++ Sbjct: 119 DTLEMARKKFPGMPASLDALCKRFNISTQERKFHGALKDATLLARVYVELL 169 >gi|15893035|ref|NP_360749.1| DNA polymerase III subunit epsilon [Rickettsia conorii str. Malish 7] gi|20137858|sp|Q92GL1|DPO3E_RICCN RecName: Full=DNA polymerase III subunit epsilon gi|15620236|gb|AAL03650.1| DNA polymerase III epsilon chain [Rickettsia conorii str. Malish 7] Length = 230 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 135/233 (57%), Gaps = 11/233 (4%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++HGI Sbjct: 4 LREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122 + EFLKDKP F +I +F +F ++ ++ I HNA FD+ F+N EL +R + L+ + Sbjct: 63 SGEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTDIKLLELAN 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++M GG Q Sbjct: 121 TIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGRQSA 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 F V N + + + TKEEL +H + + + K A Sbjct: 180 FKMVDKSAVINNLATNQVNNKT---EQTTIVIKPTKEELQKHKEFLSRILKTA 229 >gi|322831648|ref|YP_004211675.1| DNA polymerase III, subunit epsilon [Rahnella sp. Y9602] gi|321166849|gb|ADW72548.1| DNA polymerase III, epsilon subunit [Rahnella sp. Y9602] Length = 245 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 117/184 (63%), Gaps = 11/184 (5%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 9 RIVVLDTETTGMNKLGVHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFGV 67 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 HGI+DEFL DKP+F+ + +F ++ + E + HNA FD+GF++ E + ++ P + Sbjct: 68 HGISDEFLADKPTFADVADDFIEYI--RGGELVIHNATFDIGFMDYEFDMLGRNLPKTET 125 Query: 122 --RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN+L++L RY I S R+ HGALLDS +L++VY+ M G + Sbjct: 126 FCKITDSLAMARKLFPGKRNNLDALSDRYLIDNSKRTLHGALLDSEILAEVYLMMTGGQT 185 Query: 180 QINF 183 I F Sbjct: 186 SIKF 189 >gi|262372107|ref|ZP_06065386.1| ribonuclease HI [Acinetobacter junii SH205] gi|262312132|gb|EEY93217.1| ribonuclease HI [Acinetobacter junii SH205] Length = 448 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 132/224 (58%), Gaps = 12/224 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + NDRIIE+GA+E+++ T + +++ P K +++ +HGIT Sbjct: 221 RQLILDTETTGFYYQDNDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVDVHGIT 278 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 DEFL DKP ++ I ++F + AE IAHNA FD+ F++ E +R L + + D Sbjct: 279 DEFLADKPKYAEIADVLFEFL--KGAEIIAHNATFDMNFLDMEFKRAGLPALSEVCEVTD 336 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M G Q++F Sbjct: 337 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMT--GGQVSFDM 394 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 ++ K T + + D P+ T +EL +H+ ++ Sbjct: 395 DALSQTEQQQNKTTRQRVQI---DLPIIYP-TDDELQQHETWVK 434 >gi|302878569|ref|YP_003847133.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] gi|302581358|gb|ADL55369.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] Length = 233 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/172 (45%), Positives = 108/172 (62%), Gaps = 5/172 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MRKIV D ETTGLD K RIIEI A+ L + R F +L P R+ +A ++HG Sbjct: 1 MRKIVLDTETTGLDPKKGHRIIEIAAIALEGRKVSKRHFHHYLDPE-REVDEDAARVHGF 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + LK + F+ I + F +F + AE +AHNA FD+ FIN EL+ + PL+ + ++D Sbjct: 60 TWDMLKGRAKFADIATSFLEFVD--GAELMAHNAPFDMSFINNELRLLGLPPLE-NPVVD 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 TL +AR HP +N L++LC RY I +HR+ HGALLD+ LL++VY M G Sbjct: 117 TLKMAREMHPGKKNGLDALCSRYEIDNTHRTLHGALLDTELLAEVYFAMTRG 168 >gi|34581277|ref|ZP_00142757.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246] gi|229587086|ref|YP_002845587.1| DNA polymerase III subunit epsilon [Rickettsia africae ESF-5] gi|238650388|ref|YP_002916240.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str. Rustic] gi|28262662|gb|EAA26166.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246] gi|228022136|gb|ACP53844.1| DNA polymerase III epsilon chain [Rickettsia africae ESF-5] gi|238624486|gb|ACR47192.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str. Rustic] Length = 229 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 135/233 (57%), Gaps = 11/233 (4%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++HGI Sbjct: 4 LREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122 + EFLKDKP F +I +F +F ++ ++ I HNA FD+ F+N EL +R + L+ + Sbjct: 63 SGEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTDIKLLELAN 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++M GG Q Sbjct: 121 TIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGRQSA 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 F V N + + + TKEEL +H + + + K A Sbjct: 180 FKMVDKSAVINNLATNQVNNKT---EQTTIVIKPTKEELQKHKEFLSRILKTA 229 >gi|50084331|ref|YP_045841.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. ADP1] gi|49530307|emb|CAG68019.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III ,epsilon subunit, 3-5 exonucleolytic proofreading function] [Acinetobacter sp. ADP1] Length = 450 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 138/231 (59%), Gaps = 12/231 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 I+ R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P K +++ Sbjct: 217 IQAQGPRQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSV 274 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-D 119 +HGITDEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R L + Sbjct: 275 DVHGITDEFLLDKPKYAEIAEPLFEYL--KGAEIIAHNASFDMNFLDMEFKRAGLPTLSE 332 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + DTL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Sbjct: 333 VCEVTDTLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GG 390 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 Q++F R E+ + + ++ D P+ R + EL++H++ +++ Sbjct: 391 QVSFDMDALSQR---EQNQRKGQRARIEADLPVI-RPSANELEKHNEWVKS 437 >gi|157828957|ref|YP_001495199.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933682|ref|YP_001650471.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str. Iowa] gi|157801438|gb|ABV76691.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908769|gb|ABY73065.1| DNA polymerase III, epsilon chain [Rickettsia rickettsii str. Iowa] Length = 229 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 135/233 (57%), Gaps = 11/233 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++HGI Sbjct: 4 LREIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122 + EFLKDKP F +I +F +F ++ ++ I HNA FD+ F+N EL +R + L+ + Sbjct: 63 SGEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTDIKLLELAN 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++M GG Q Sbjct: 121 TIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGRQSA 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 F V N + + + TKEEL +H + + + K A Sbjct: 180 FKMVDKSAVINNLATNQVNNKT---EQTTIVIKPTKEELQKHKEFLSRILKTA 229 >gi|34496712|ref|NP_900927.1| DNA-directed DNA polymerase subunit epsilon [Chromobacterium violaceum ATCC 12472] gi|34102567|gb|AAQ58932.1| DNA-directed DNA polymerase, epsilon chain [Chromobacterium violaceum ATCC 12472] Length = 239 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 109/174 (62%), Gaps = 6/174 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGLD + RIIE +E++ T + +++ P R+ PEA ++HGI Sbjct: 1 MRQIILDTETTGLDPQQGHRIIEFAGLEMVGRKLTGKHLHLYIHPE-REIDPEAQRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 + EFL KP F+ + E DF ++AE I HNA FDVGF+NAE + +P+ + + Sbjct: 60 SLEFLAGKPVFAKVAHEIADFL--RDAELIIHNAPFDVGFLNAEFAKAGIEPVGKLCASV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL+ AR P RN L++LC R+ I S+R+ HGAL+D LLS+VY+ M G Sbjct: 118 IDTLAEARDMFPGKRNSLDALCDRFEIDRSNRTLHGALVDCELLSEVYLWMTRG 171 >gi|239947177|ref|ZP_04698930.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239921453|gb|EER21477.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 240 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 116/181 (64%), Gaps = 8/181 (4%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++HGI Sbjct: 15 LREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRMHGI 73 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122 + EFLKDKP F +I +F +F +++ I HNA FD+ F+N EL +R L+ + Sbjct: 74 SGEFLKDKPLFHTIADDFLEFI--ADSKLIIHNAPFDIKFLNHELSLLKRAEIKLLELAN 131 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++M GG Q Sbjct: 132 TIDTLVMARSMFPGSKYNLDALCKRFKVDNSSRQLHGALKDAALLAEVYVELM-GGRQSA 190 Query: 183 F 183 F Sbjct: 191 F 191 >gi|294141155|ref|YP_003557133.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12] gi|293327624|dbj|BAJ02355.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12] Length = 242 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 118/195 (60%), Gaps = 12/195 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I + R+I+ D ETTG++ RIIEIG VE+++ T R + ++ P + Sbjct: 3 IVSSAKRQIILDTETTGMNQAAGAIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QLI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114 EA+++HGI++E++ +KP F+ I F +F + AE +AHNA FD+ F++ E + Sbjct: 62 DEEAIQVHGISNEYVANKPKFAEIAQSFIEFID--GAEVVAHNASFDISFMDHEFGLLRP 119 Query: 115 KDP--LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 K P D I+DTL+IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 KGPKTADICGILDTLAIAKYLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKT 187 M G ++ N T Sbjct: 180 LMTGGQTKFNLSGDT 194 >gi|67458568|ref|YP_246192.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2] gi|75536966|sp|Q4UN31|DPO3E_RICFE RecName: Full=DNA polymerase III subunit epsilon gi|67004101|gb|AAY61027.1| DNA polymerase III epsilon chain [Rickettsia felis URRWXCal2] Length = 229 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 136/233 (58%), Gaps = 11/233 (4%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R +A ++HGI Sbjct: 4 LREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFDAYRIHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122 + EFLKDKP F +I +F +F ++ ++ I HNA FD+ F+N EL +R L+ S Sbjct: 63 SGEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRAEIKLLELSN 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY++ + GG Q Sbjct: 121 AIDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVE-LTGGRQSA 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 F D+ + ++ + + TKEEL +H + + ++ K A Sbjct: 180 FKMV---DKSVETNNLATNQVNNKTEQATIVIKPTKEELQKHKEFLSSILKTA 229 >gi|163797056|ref|ZP_02191011.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199] gi|159177572|gb|EDP62125.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199] Length = 230 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 136/232 (58%), Gaps = 6/232 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD DRI+EIG VEL+++ T RT ++ P R A ++HG+ Sbjct: 1 MREIVLDTETTGLDPDTGDRIVEIGCVELINHVPTGRTLHHYINPE-RDMPLGAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL P F ++ E +F +A + HNA FD+ FINAEL+R+N+ + S+ +D Sbjct: 60 SSEFLSAYPVFGALADEILEFLG--DAVLVIHNASFDMKFINAELRRLNRPEIPMSQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +ARRK+P ++ L++LC+R+ I HR+ HGALLD+ LL+ VY++ ++GG Q + Sbjct: 118 TVQLARRKYPGAQASLDALCRRFEIDNGHRTLHGALLDADLLAAVYLE-LIGGRQPDLAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + +T + +P + +EL H ++++ K+ IW Sbjct: 177 AAQKPSDESPGSRTAEHREARPYREPRPHAPSADELAAHRTFLESI-KDPIW 227 >gi|260557363|ref|ZP_05829578.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606] gi|260408989|gb|EEX02292.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606] Length = 459 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + + D Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 403 >gi|163752245|ref|ZP_02159446.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99] gi|161327875|gb|EDP99054.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99] Length = 240 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 75/191 (39%), Positives = 116/191 (60%), Gaps = 12/191 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I + R+++ D ETTG++ RIIEIG VE+++ T R + ++ P + Sbjct: 3 IVSSAKRQVILDTETTGMNQGAGAIFLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QLI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQR 112 EA+ +HGI++E++ +KP F+ I F +F + AE +AHNA FD+ F++ E LQ Sbjct: 62 DEEAIAVHGISNEYVANKPKFAEIAQSFIEFID--GAEVVAHNASFDISFMDHEFGLLQP 119 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D I+DTL+IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 KGPKTADICAILDTLAIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINF 183 M G +++N Sbjct: 180 LMTGGQTKLNL 190 >gi|240142395|ref|YP_002966905.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] gi|240012339|gb|ACS43564.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] Length = 248 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 121/207 (58%), Gaps = 12/207 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG D K DRIIE+G VE+++ +T R F ++ P R +A +HGIT Sbjct: 6 RIVVGDTETTGTDPKGGDRIIEVGFVEIVNGFRTGRHFHSYVNPE-RPVPADATAIHGIT 64 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE LKD P F+++ ++ +F + A I HNA FD+GF + E ++ LD SR+ D+ Sbjct: 65 DEMLKDAPVFAAVAADIVEFIADSPA--IFHNAPFDLGFFDLEFGLLSLPSLDRSRVTDS 122 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFG 184 L AR+ P+ ++ L++LC RYGI + R+KHGAL+DS LL+DV++ M GG FG Sbjct: 123 LVHARKLLPAGAKAGLDALCNRYGIDRTRRTKHGALMDSELLADVWLAMTGTGGLAHGFG 182 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKP 211 EE V + L+R P Sbjct: 183 PAAQ-----AEESAAVGRVP-LRRHAP 203 >gi|193076772|gb|ABO11486.2| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978] Length = 497 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 327 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + + D Sbjct: 328 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 385 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 386 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 441 >gi|332852350|ref|ZP_08434135.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013150] gi|332870148|ref|ZP_08439060.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013113] gi|332875093|ref|ZP_08442929.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6014059] gi|332729293|gb|EGJ60634.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013150] gi|332732415|gb|EGJ63671.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013113] gi|332736710|gb|EGJ67701.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6014059] Length = 497 Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 327 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + + D Sbjct: 328 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 385 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 386 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 441 >gi|323143749|ref|ZP_08078417.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT 12066] gi|322416462|gb|EFY07128.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT 12066] Length = 309 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 116/184 (63%), Gaps = 9/184 (4%) Query: 7 MRKIVFDIETTGLD----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +R++ D ETTG + RIIE+G VE+++ T R Q F+ P+ R EA ++ Sbjct: 4 LRQVALDTETTGKSDDGTTGTHRIIEVGCVEIINRRLTGRQLQFFVNPD-RHIDEEATEV 62 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE--LQRINKDPLDP 120 HGITDE L DKP F+ + +E DF + +E + HNAKFD F++ E L ++N+ D Sbjct: 63 HGITDEMLADKPHFADVANELIDFI--RGSELLIHNAKFDSAFLDKEWDLLKLNEHTKDM 120 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +I+DT+ +AR+ +P+++ +L++LC Y I S R+ HGALLD+ LL++VY+ M G S Sbjct: 121 CKIVDTVELARKINPNNQANLDNLCSIYDIDNSRRTVHGALLDAQLLAEVYLAMTGGQSS 180 Query: 181 INFG 184 +FG Sbjct: 181 FDFG 184 >gi|301596826|ref|ZP_07241834.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB059] Length = 438 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 211 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 268 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + + D Sbjct: 269 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 326 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 327 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 382 >gi|239503330|ref|ZP_04662640.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB900] Length = 459 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + + D Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 403 >gi|126641104|ref|YP_001084088.1| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978] Length = 459 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + + D Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 403 >gi|169796679|ref|YP_001714472.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter baumannii AYE] gi|184157414|ref|YP_001845753.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU] gi|213156097|ref|YP_002318517.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii AB0057] gi|215484167|ref|YP_002326392.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB307-0294] gi|301344775|ref|ZP_07225516.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB056] gi|301510946|ref|ZP_07236183.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB058] gi|169149606|emb|CAM87496.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III ,epsilon subunit, 3-5 exonucleolytic proofreading function] [Acinetobacter baumannii AYE] gi|183209008|gb|ACC56406.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU] gi|213055257|gb|ACJ40159.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii AB0057] gi|213985858|gb|ACJ56157.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB307-0294] gi|322507294|gb|ADX02748.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 1656-2] gi|323517313|gb|ADX91694.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii TCDC-AB0715] Length = 459 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + + D Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 403 >gi|169633080|ref|YP_001706816.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter baumannii SDF] gi|169151872|emb|CAP00707.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III ,epsilon subunit, 3-5 exonucleolytic proofreading function] [Acinetobacter baumannii] Length = 459 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVQVHGIT 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + + D Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 403 >gi|261364618|ref|ZP_05977501.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996] gi|288567207|gb|EFC88767.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996] Length = 239 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 131/236 (55%), Gaps = 14/236 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL ++N DR++E +E+++ T R +++ P R EA ++HG+T Sbjct: 3 RQIILDTETTGLYAENGDRLVEFAGLEMVNRQMTGRFLHLYVHPQ-RDMPEEAARVHGLT 61 Query: 67 DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L++K P F+ + E +F + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 62 IDVLEEKNAPPFAKVGQEISEFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSVEELGCE 119 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I DTL++AR P + L++LC R I S R HGAL+D LL +VY+ M ++ Sbjct: 120 ITDTLAMAREMFPGQKASLDALCNRLSIDRSKRVLHGALIDCELLGEVYLAM----TRQQ 175 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKNAIW 237 F E +E K V I+ KR L + EEL+EH+K + LG+ IW Sbjct: 176 FDLMGGESEEETKEDKPVI-IAETKRSSSLKVIKANSEELEEHEKYLDALGEPCIW 230 >gi|82702745|ref|YP_412311.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] gi|82410810|gb|ABB74919.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] Length = 234 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/241 (37%), Positives = 129/241 (53%), Gaps = 21/241 (8%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL+ K RIIEIGAVE++ T R F +L P R+ AL++HGI Sbjct: 1 MRQIFIDTETTGLEPKLGHRIIEIGAVEMMSRRLTGRRFHHYLNPE-REIEEGALQVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T EFL DK F+ + E +F + AE I HNA FDV F++ EL N L + Sbjct: 60 TSEFLLDKRKFADVVHELLEFID--GAELIMHNAAFDVAFLDHELGLANLPALCECCHSV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL +A+ P RN L++LC+RY + S R+ HGALLD+ LL++VY+ M G Sbjct: 118 TDTLKMAKELFPGKRNSLDALCERYEVDNSRRALHGALLDAELLAEVYLAMTRG------ 171 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR-ITKEELDEHDKTIQTLGKNA----IWD 238 E + E + ++ + D L + EEL+ H + ++ + K + +W Sbjct: 172 ----QESLLMELEAPSPLDLDISLHDLQLVVLPASAEELEAHARQLEMIEKESKGKCLWM 227 Query: 239 R 239 R Sbjct: 228 R 228 >gi|118594819|ref|ZP_01552166.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Methylophilales bacterium HTCC2181] gi|118440597|gb|EAV47224.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Methylophilales bacterium HTCC2181] Length = 222 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 128/234 (54%), Gaps = 15/234 (6%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGLD ++ R+IEI A+E + T+ F ++ P R+ A ++HGI Sbjct: 1 MRQIFLDTETTGLDPNQGHRVIEIAAIEFNNRQATSNRFHFYVNPQ-REIDAAAQEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T +FL DKP F I ++F F N +E + HNA FDVGF+N EL +I + L+ I Sbjct: 60 TLDFLNDKPLFVDIAADFIAFIN--GSELVIHNAPFDVGFLNMELGKIGMEKLESYCDGI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +D+L A+ P RN L++LC+ + + S RS HGALLD+ LL +VYI+M G Sbjct: 118 MDSLKFAKEIRPGQRNSLDALCRAFDVDNSTRSLHGALLDAQLLGEVYIQMTRGQEAFTI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 F EE + + + + T+ +E++ H+ ++++ + W Sbjct: 178 NF---------EEDSSKAALQSVDHGDLIVTQPALDEVEAHNSYLRSINRTDGW 222 >gi|255320390|ref|ZP_05361574.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens SK82] gi|262379328|ref|ZP_06072484.1| ribonuclease HI [Acinetobacter radioresistens SH164] gi|255302585|gb|EET81818.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens SK82] gi|262298785|gb|EEY86698.1| ribonuclease HI [Acinetobacter radioresistens SH164] Length = 455 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 135/225 (60%), Gaps = 14/225 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P K +++ +HGIT Sbjct: 228 RQLILDTETTGFYFQDGDRIIEVGAIEMVNRKLTGSSIHIYINP--EKPVGDSVDIHGIT 285 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 DEFL+DKP ++ I +++ + AE IAHNA FD+ F++ E +R L + + D Sbjct: 286 DEFLQDKPRYAEIAEVLFNYL--KGAEIIAHNASFDMNFLDMEFKRAGFPALSEVCEVTD 343 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 344 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSFDM 401 Query: 186 KTNEDRFFKEE-KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 D + E ++ + ++ D P+ + EEL H++ +Q Sbjct: 402 ----DALSQSEISQSQASRQVINVDLPVIVP-SPEELAAHEEWVQ 441 >gi|260221145|emb|CBA29417.1| DNA polymerase III subunit epsilon [Curvibacter putative symbiont of Hydra magnipapillata] Length = 236 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 124/241 (51%), Gaps = 19/241 (7%) Query: 7 MRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 MR+IV D ETTG + + DR++EIG VEL++ T +L P GR + AL++ Sbjct: 1 MRQIVLDTETTGFYANHPDNPDRMVEIGCVELVNRKLTGNNLHFYLNP-GRDSDEGALRV 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HG+T +FL DKP F I + D+ AE I HNA FD+ F++ EL R + P Sbjct: 60 HGLTTQFLSDKPRFEEIAQQLVDYVG--GAEIIIHNAPFDLSFLDMELGRTGRKPFKTCV 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + ++DTL +A+ P RN L++LC R + S R+ HGALLD+ LL+DVYI M G Sbjct: 118 AGVLDTLVMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINMTRGQDA 177 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAI 236 + E +E V + L P+ +E+ H+ + L G + Sbjct: 178 LIM-----ESSAPQEAGIVVEQLDLRSIQLPVL-EANAQEMAAHEDVLSQLDKSSGGKTV 231 Query: 237 W 237 W Sbjct: 232 W 232 >gi|260550748|ref|ZP_05824956.1| ribonuclease HI [Acinetobacter sp. RUH2624] gi|260406254|gb|EEW99738.1| ribonuclease HI [Acinetobacter sp. RUH2624] Length = 459 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 134/228 (58%), Gaps = 12/228 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P K E+ +HGI+ Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGESENIHGIS 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 D+FLKDKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + + D Sbjct: 290 DDFLKDKPVYADIADTLFEYL--KGAEIIAHNATFDMNFLDMEFRRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSFDM 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 ++K T I + D P+ + EEL+ H+ ++ K Sbjct: 406 DALSQSESDQQKTTKARIQI---DLPVIYP-SDEELNIHETWVKEFEK 449 >gi|325121399|gb|ADY80922.1| bifunctional protein dnaQ [Acinetobacter calcoaceticus PHEA-2] Length = 459 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 134/224 (59%), Gaps = 12/224 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P +K ++ +HGI+ Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--QKPVGDSENIHGIS 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 D+FLKDKP ++ I +D+ + AE IAHNA FD+ F++ E +R+ L + + D Sbjct: 290 DDFLKDKPLYADIADTLFDYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMT--GGQVSFDI 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 E + N S ++ D P+ + EEL+ H+ ++ Sbjct: 406 DALSQ---SENSQQTTNRSRVQIDLPVIYP-SDEELNTHETWVK 445 >gi|226952576|ref|ZP_03823040.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. ATCC 27244] gi|226836656|gb|EEH69039.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. ATCC 27244] Length = 452 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 131/224 (58%), Gaps = 12/224 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P K +++ +HGIT Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVDVHGIT 282 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 DEFL+DKP ++ I + + + AE IAHNA FD+ F++ E +R+ L + + D Sbjct: 283 DEFLQDKPKYAEIADALFAYL--KGAEIIAHNATFDMNFLDMEFKRVGLPLLSEVCEVTD 340 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M G Q++F Sbjct: 341 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMT--GGQVSFDI 398 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 + K T + + R ++ EL+EH+ ++ Sbjct: 399 DALSQHEQNQNKTTRQRVQI----DLAVIRPSEHELNEHETWVK 438 >gi|157803402|ref|YP_001491951.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str. McKiel] gi|157784665|gb|ABV73166.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str. McKiel] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 130/222 (58%), Gaps = 11/222 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++HG+ Sbjct: 4 LREIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRIHGL 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122 +DEFLKDKP F +I +F +F ++ ++ I HNA FD+ F+N EL +R L+ + Sbjct: 63 SDEFLKDKPLFHTIADDFLEFISD--SKLIIHNAPFDIKFLNHELSLLKRTEIKLLELAN 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL +AR P ++ +L++LCKR+ + S R H AL D+ LL++VY+ + GG Q Sbjct: 121 TIDTLVMARSMFPGAKYNLDALCKRFKVDNSGRQVHSALKDAALLAEVYVA-LTGGRQST 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 F DR + ++ + + + TKEEL +H Sbjct: 180 FKIV---DRSIRINNLATHQVNNKTQQTTIVIKPTKEELQKH 218 >gi|261400727|ref|ZP_05986852.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC 23970] gi|269209492|gb|EEZ75947.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC 23970] Length = 244 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 133/237 (56%), Gaps = 17/237 (7%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA K+HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAAKVHGLT 62 Query: 67 DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L++K P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M ++ Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISL-LKRDKPL-FTRITKEELDEHDKTIQTLGKNAIW 237 F ++ KEE P +S+ +KR L + + EL H+K + LG++ IW Sbjct: 177 FDLMGEDE---KEEPAAQPAVSVEMKRSAKLKVVKADETELAAHEKYLDGLGESCIW 230 >gi|157826195|ref|YP_001493915.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford] gi|157800153|gb|ABV75407.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford] Length = 229 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 135/233 (57%), Gaps = 11/233 (4%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+I+ D ETTGLD + RI+EI A+E+++ T R F ++ P R +A ++HGI Sbjct: 4 LREIILDTETTGLDPRQGHRIVEIAAIEMMNKVLTGRNFHFYINPE-RDIPFDAYRIHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122 + EFLKDKP F +I +F +F +++ + HNA FD+ F+N EL +R L+ S Sbjct: 63 SGEFLKDKPLFHTIADDFLEFI--ADSKLVIHNAPFDIKFLNHELSLLKRAEIKLLELSN 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY++ + GG Q + Sbjct: 121 AIDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVE-LTGGRQSS 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 F D+ + ++ + + TKEEL +H + + ++ K A Sbjct: 180 FKMV---DKSAGINNLAINQVNSKTEQASIVIKPTKEELQKHKEFLSSILKTA 229 >gi|294649872|ref|ZP_06727272.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter haemolyticus ATCC 19194] gi|292824246|gb|EFF83049.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter haemolyticus ATCC 19194] Length = 452 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 115/178 (64%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P K +++ +HGIT Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINP--EKPVGDSVDVHGIT 282 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 DEFL+DKP ++ I + + + AE IAHNA FD+ F++ E +R+ L + + D Sbjct: 283 DEFLQDKPKYAEIADALFAYL--KGAEIIAHNATFDMNFLDMEFKRVGLPLLSEVCEVTD 340 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M G Q++F Sbjct: 341 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMT--GGQVSF 396 >gi|319941413|ref|ZP_08015741.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B] gi|319805033|gb|EFW01863.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B] Length = 246 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 131/234 (55%), Gaps = 21/234 (8%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 R I D ETTGLD++N DRIIEIG V + + S Q+F+ P R+ EA+ +H Sbjct: 6 RLITLDTETTGLDAQNGDRIIEIGCVAIEGRMMRSTDEHHLQIFVNPE-REVPEEAVAIH 64 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSR 122 GIT E+L+DKP F+ I +F DF + + + HNA FD GF++ EL R + + D + Sbjct: 65 GITTEYLQDKPKFAEIADKFIDFV--KGSTLVIHNAAFDTGFLDMELGRCGRGKISDYCQ 122 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDT+ +A++ P L+SLC+ Y I S+R+ HGALLD+ LL++VY+ + G + Sbjct: 123 VIDTVKLAKKLLPGRAVSLDSLCRYYEIDNSNRTLHGALLDAELLAEVYLSLSRGQDTLT 182 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR-DKPLFTRITKEELDEHDKTIQTLGKNA 235 NED + N+ + D + + + EEL EH++ + K A Sbjct: 183 L---VNED---------IDNLPPMPAFDASIVIKASPEELAEHERILDIAEKKA 224 >gi|21672521|ref|NP_660588.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|21623143|gb|AAM67799.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 234 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 100/236 (42%), Positives = 137/236 (58%), Gaps = 17/236 (7%) Query: 5 NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R IV D ETTG++S N RIIEIGA+E+++ T + F ++ PN R +A Sbjct: 4 NTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIESDA 62 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGITD+FL DKPSF I +F+++ +N+E I HNA FDVGFIN E + K D Sbjct: 63 SKIHGITDDFLSDKPSFKDIAKDFFNYI--KNSELIIHNASFDVGFINQEFSMLTKKIQD 120 Query: 120 PSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 S IIDTL IAR+ P +N L++LC RY I SHR HGA+LD+ LL +Y+ M Sbjct: 121 ISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLLMTS 180 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTL 231 G I F +R F+ KK S+ K+ + L + K EL H++ ++ L Sbjct: 181 GQESIIFNKNIQNERNFRYIKK-----SITKKHRFLKIIKANKTELKLHNEYLKFL 231 >gi|33519691|ref|NP_878523.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia floridanus] gi|33517354|emb|CAD83739.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia floridanus] Length = 258 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 78/187 (41%), Positives = 113/187 (60%), Gaps = 11/187 (5%) Query: 5 NKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R +V D ETTG++ + RIIEIGAVE+++ TN F V+L PN R EA Sbjct: 4 NSNRYVVLDTETTGMNKFGVHYEGHRIIEIGAVEIINRRLTNNQFHVYLNPN-RSVDSEA 62 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDP 117 +HGI+D+FL D+P F I ++F F + + + HNA FD+GF+N EL I N Sbjct: 63 FAIHGISDQFLVDQPCFLDIANDFLQFI--RGSTLVIHNASFDLGFLNFELHNIYLNSRT 120 Query: 118 LDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ +ID+L +AR+ P RN L++LC+RY I S R H AL+D+ LL+ V++ M Sbjct: 121 VESYCTVIDSLKLARKIFPGQRNSLDALCERYCIKNSKRILHNALIDAQLLAYVFLVMTG 180 Query: 177 GGSQINF 183 G ++I F Sbjct: 181 GQTRIQF 187 >gi|2833216|sp|Q08880|DPO3E_BUCAP RecName: Full=DNA polymerase III subunit epsilon gi|1794288|gb|AAC44791.1| DNA polymerase III epsilon chain [Buchnera aphidicola] Length = 233 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 100/236 (42%), Positives = 137/236 (58%), Gaps = 17/236 (7%) Query: 5 NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R IV D ETTG++S N RIIEIGA+E+++ T + F ++ PN R +A Sbjct: 3 NTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIESDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGITD+FL DKPSF I +F+++ +N+E I HNA FDVGFIN E + K D Sbjct: 62 SKIHGITDDFLSDKPSFKDIAKDFFNYI--KNSELIIHNASFDVGFINQEFSMLTKKIQD 119 Query: 120 PSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 S IIDTL IAR+ P +N L++LC RY I SHR HGA+LD+ LL +Y+ M Sbjct: 120 ISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLLMTS 179 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTL 231 G I F +R F+ KK S+ K+ + L + K EL H++ ++ L Sbjct: 180 GQESIIFNKNIQNERNFRYIKK-----SITKKHRFLKIIKANKTELKLHNEYLKFL 230 >gi|238022806|ref|ZP_04603232.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147] gi|237866009|gb|EEP67145.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147] Length = 244 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 71/172 (41%), Positives = 103/172 (59%), Gaps = 8/172 (4%) Query: 8 RKIVFDIETTGL----DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 R+I+ D ETTG DR+IE +E+++ T T +++ P R EA +H Sbjct: 7 RQIILDTETTGFYHSAAENPDRLIEFAGLEMVNRQLTENTLHLYIHPQ-RDIPAEAAAIH 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SR 122 GIT + L+ KP F+ + + +DF + AE I HNAKFD+GF+NAE R+ P+D Sbjct: 66 GITLDQLEGKPVFAQVAQQIFDFL--KGAELIIHNAKFDIGFLNAEFARVGLPPIDSVCS 123 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +IDTL +AR K+P +N+L++LC R G+ S R HGAL+D LL VY+ M Sbjct: 124 VIDTLEMARNKYPGQKNNLDALCNRLGVDRSRRVLHGALIDCELLGGVYLAM 175 >gi|293608835|ref|ZP_06691138.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024] gi|292829408|gb|EFF87770.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024] Length = 459 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 134/224 (59%), Gaps = 12/224 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P +K ++ +HGI+ Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--QKPVGDSENIHGIS 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 D+FLKDKP ++ I +D+ + AE IAHNA FD+ F++ E +R+ L + + D Sbjct: 290 DDFLKDKPLYADIADTLFDYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMT--GGQVSFDI 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 E + N S ++ D P+ + EEL+ H+ ++ Sbjct: 406 DALSQ---SENSQQTTNRSRVQIDLPVIYP-SDEELNIHETWVK 445 >gi|299771048|ref|YP_003733074.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. DR1] gi|298701136|gb|ADI91701.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. DR1] Length = 458 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 134/228 (58%), Gaps = 12/228 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P +K ++ +HGI+ Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--QKPVGDSENIHGIS 288 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 D FLKDKP ++ I +D+ + AE IAHNA FD+ F++ E +R L + + D Sbjct: 289 DNFLKDKPLYAEIADTLFDYL--KGAEIIAHNATFDMNFLDMEFRRAGLPALSEVCEVTD 346 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSFDI 404 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 E + N + ++ D P+ ++EEL+ H+ ++ K Sbjct: 405 DALSQ---SENSQNTTNKTRIQIDLPVIYP-SEEELNTHETWVKEFEK 448 >gi|262277819|ref|ZP_06055612.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114] gi|262224922|gb|EEY75381.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114] Length = 223 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 131/223 (58%), Gaps = 10/223 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M++++ D ETTGL S ND+IIEI +E+ D+ T F VFL P + S A HGI+ Sbjct: 1 MKEVLLDTETTGLSSVNDKIIEIACIEIEDHIPTGEKFHVFLNPE-MEISQGAYDTHGIS 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 EFLK+KP F+ + +F F + + + HNA+FD+ F+N EL+ + + + I+DT Sbjct: 60 KEFLKNKPKFNDVAKDFTKFID--GKKLVIHNAEFDLAFLNKELKEVGEKQISKDNIVDT 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+IAR K P ++N L++LCKR+ I S R KH ALLD LL+ VYI++ + F F Sbjct: 118 LNIAREKFPGAQNSLDALCKRFKIDNSRRQKHSALLDCELLAKVYIELF-EKKEPTFEFD 176 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 N + +++ N+ +K K + +IT EE H + +Q Sbjct: 177 LN------AQDESIKNVKNIKDRKQIIAQITNEEKRLHKEFLQ 213 >gi|303256972|ref|ZP_07342986.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] gi|302860463|gb|EFL83540.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] Length = 260 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 74/173 (42%), Positives = 108/173 (62%), Gaps = 10/173 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTG+ +K DRIIEIG VEL ++ T++ F ++ P R+ E +++H I Sbjct: 1 MREICLDTETTGMAAKEGDRIIEIGCVELGEHGLTDKNFHEYIDPE-RQMEAEVIRVHKI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----S 121 T+EFL KP F+ I +F +F Q A I HNA+FD+GF+N EL+++ K ++ Sbjct: 60 TNEFLVGKPKFADIADKFIEFV--QGARLIIHNAQFDIGFLNEELRKLGKPSMEEICGKD 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172 IID++ +A+ P N L++LCKR I + R K HGALLD+ LL VY+ Sbjct: 118 NIIDSMELAKAAFPQMHNSLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYL 170 >gi|309378712|emb|CBX22662.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 244 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 132/237 (55%), Gaps = 17/237 (7%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L++K P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M ++ Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISL-LKRDKPL-FTRITKEELDEHDKTIQTLGKNAIW 237 F ++ KEE P +S +KR L + + EL H+K + LG++ IW Sbjct: 177 FDLMGEDE---KEEPAAQPAVSAEMKRSAKLKVVKADEAELAAHEKYLDGLGESCIW 230 >gi|71065393|ref|YP_264120.1| bifunctional ribonuclease HI/DNA polymerase III, epsilon subunit [Psychrobacter arcticus 273-4] gi|71038378|gb|AAZ18686.1| bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit [Psychrobacter arcticus 273-4] Length = 527 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 71/186 (38%), Positives = 112/186 (60%), Gaps = 7/186 (3%) Query: 3 RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R R+++ D ETTGLD K DRIIE+G VE++ T V++ P R E ++ Sbjct: 297 RHESDRQLIMDTETTGLDPLKGDRIIEVGIVEMIGRKFTGEKLHVYINPQ-RGMDEEVIR 355 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDP 120 +HGI++ FL DKP+F + +DF + AE IAHNA FD+ F+N E ++ D + Sbjct: 356 IHGISEAFLTDKPTFDQVAQSLYDFMD--GAEIIAHNASFDMNFLNMEFAKVGMHDFAER 413 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ D+L +A++++P +N L++L +R + R+ HGALLDS +L++VY+ M G Q Sbjct: 414 VRVTDSLVMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEILAEVYLTMT--GGQ 471 Query: 181 INFGFK 186 + G + Sbjct: 472 VTLGIE 477 >gi|225075242|ref|ZP_03718441.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens NRL30031/H210] gi|224953417|gb|EEG34626.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens NRL30031/H210] Length = 245 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 135/244 (55%), Gaps = 15/244 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL +N DR++E +E+++ T+ +++ P R EA K+HG+T Sbjct: 4 RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ + Sbjct: 63 IEVLEAKNAPPFAQVGKQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCK 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M ++ Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRQQ 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F E E K+TV I+ KR L + +EL H+K + LG+ +W + Sbjct: 177 FDLMGGEAEEEGEVKQTV--IAETKRTSQLKVVKANADELAAHEKYLDDLGEACVWRKAE 234 Query: 242 SSNQ 245 +S++ Sbjct: 235 TSDE 238 >gi|262375943|ref|ZP_06069174.1| ribonuclease HI [Acinetobacter lwoffii SH145] gi|262309037|gb|EEY90169.1| ribonuclease HI [Acinetobacter lwoffii SH145] Length = 458 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 135/224 (60%), Gaps = 12/224 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P + +++ +HGIT Sbjct: 231 RQLILDTETTGFYYQDGDRIIEVGALEMINRKLTGSSIHIYINP--KTPVGDSVNVHGIT 288 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 DEFL+DKP F I +D+ + AE IAHNA FD+ F++ E +R L + + D Sbjct: 289 DEFLQDKPLFEEISQVLFDYLH--GAEIIAHNATFDMNFLDMEFKRAGFKALSEVCDVTD 346 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILSDVYLAMT--GGQVSFDI 404 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 E++ + ++ ++ + P+ +++EL EH+ ++ Sbjct: 405 DALSQ---SEDQNSRSGMARVEIELPVILP-SEQELQEHENWVK 444 >gi|298369358|ref|ZP_06980676.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298283361|gb|EFI24848.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 240 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 132/238 (55%), Gaps = 19/238 (7%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL ++ DR++E +E+++ T+ +++ P R EA K+HG+T Sbjct: 4 RQIILDTETTGLYAEGGDRLVEFAGLEMINRQMTDNNLHLYIHPE-RDMPEEAAKVHGLT 62 Query: 67 DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L++K P F+ + + DF ++AE I HNAKFD+GF+N E +R+ ++ Sbjct: 63 IEVLEEKNAPPFAEVGRQIADFI--RDAELIIHNAKFDIGFLNMEFRRMGLPSIEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R + S R HGAL+D LL +VY+ M ++ Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAM----TRQQ 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK---EELDEHDKTIQTLGKNAIW 237 F E KEE + V + + + +P ++ K EEL H++ + LG+ +W Sbjct: 177 FDLMGGE----KEEDEEVKPVIIAETKRPAHLKVIKANAEELAAHEQYLDGLGEACLW 230 >gi|255065954|ref|ZP_05317809.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256] gi|255049865|gb|EET45329.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256] Length = 255 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 131/238 (55%), Gaps = 19/238 (7%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL ++ DR++E +E+++ T +++ P R EA K+HG+T Sbjct: 19 RQIILDTETTGLYAEGGDRLVEFAGLEMINRQITGNNLHLYVHPE-RDMPEEAAKVHGLT 77 Query: 67 DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L++K P F+ + + DF ++AE I HNAKFDVGF+N E +R+ ++ Sbjct: 78 IEVLEEKNAPPFAEVGRQIADFI--RDAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCT 135 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R + S R HGAL+D LL +VY+ M ++ Sbjct: 136 VTDTLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAM----TRQQ 191 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK---EELDEHDKTIQTLGKNAIW 237 F E KEE + V + + + +P ++ K EEL H++ + LG+ +W Sbjct: 192 FDLMGGE----KEEDEEVKPVIIAETKRPAHLKVIKANAEELAAHEQYLDGLGEACLW 245 >gi|313668102|ref|YP_004048386.1| DNA polymerase III, epsilon chain [Neisseria lactamica ST-640] gi|313005564|emb|CBN87000.1| DNA polymerase III, epsilon chain [Neisseria lactamica 020-06] Length = 244 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 132/237 (55%), Gaps = 17/237 (7%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L++K P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M ++ Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISL-LKRDKPL-FTRITKEELDEHDKTIQTLGKNAIW 237 F ++ KEE P +S +KR L + + EL H+K + LG++ IW Sbjct: 177 FDLMGEDE---KEEPAAQPAVSAEMKRSAKLKVVKADEAELAAHEKYLDGLGESCIW 230 >gi|241758776|ref|ZP_04756889.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114] gi|241320984|gb|EER57197.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114] Length = 245 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 135/244 (55%), Gaps = 15/244 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL +N DR++E +E+++ T+ +++ P R EA K+HG+T Sbjct: 4 RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ + Sbjct: 63 IEVLEAKNAPPFAQVGKQIADFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCK 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M ++ Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRQQ 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F E E K+TV I+ KR L + +EL H+K + LG+ +W + Sbjct: 177 FDLMGGEAEEEGEVKQTV--IAETKRTSQLKVIKANADELAAHEKYLDDLGEACVWRKAE 234 Query: 242 SSNQ 245 +S++ Sbjct: 235 TSDE 238 >gi|262279776|ref|ZP_06057561.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202] gi|262260127|gb|EEY78860.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202] Length = 458 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 114/178 (64%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P +K ++ +HGI+ Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP--QKPVGDSENIHGIS 288 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 D FLKDKP ++ I +D+ + AE IAHNA FD+ F++ E +R L + + D Sbjct: 289 DNFLKDKPLYADIADTLFDYL--KGAEIIAHNATFDMNFLDMEFRRAGLPALSEVCEVTD 346 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMT--GGQVSF 402 >gi|197103471|ref|YP_002128848.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1] gi|196476891|gb|ACG76419.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1] Length = 234 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 72/173 (41%), Positives = 107/173 (61%), Gaps = 6/173 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG D DR++EI +E+ D+ T R F ++ P R EA K+HG++ Sbjct: 3 REIVLDTETTGFDPLTGDRLVEIACLEIEDFIPTGRHFHAYIDPC-RDMPAEAEKVHGLS 61 Query: 67 DEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 FL+ KP F + I F DF +A +AHNA FD F+N EL ++ L R I Sbjct: 62 TAFLRGKPKFEAPEIVEAFLDFV--ADAPIVAHNAAFDRAFVNYELGLCSRAELPDHRWI 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 DTL++A+++ P N L++LCKR+ I+++ R KHGAL+D+ LL+ VY+++ G Sbjct: 120 DTLALAKQRFPGMHNSLDALCKRFKISLAEREKHGALIDTKLLAAVYLELRGG 172 >gi|256112396|ref|ZP_05453317.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] Length = 153 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/154 (42%), Positives = 96/154 (62%), Gaps = 4/154 (2%) Query: 91 NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150 A +AHNA FD+GFINAEL R+++ + I+DTL++ARRKHP N L++LCKRYGI Sbjct: 2 GARLVAHNAMFDLGFINAELARLDQAEITSEHIVDTLALARRKHPIGPNSLDALCKRYGI 61 Query: 151 TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEK--KTVPNISLLKR 208 SHR+ HGALLD+ +L++VYI+ ++GG Q G + + + P + L R Sbjct: 62 DNSHRTLHGALLDAQILAEVYIE-LIGGKQTALGLTMESGSAGGDSRGNGSAP-VVLAAR 119 Query: 209 DKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 +PL RI+ E H ++ +G A+W +Y+S Sbjct: 120 PRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 153 >gi|325267110|ref|ZP_08133779.1| DNA-directed DNA polymerase III epsilon subunit [Kingella denitrificans ATCC 33394] gi|324981463|gb|EGC17106.1| DNA-directed DNA polymerase III epsilon subunit [Kingella denitrificans ATCC 33394] Length = 245 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 123/239 (51%), Gaps = 21/239 (8%) Query: 8 RKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 R+I+ D ETTG + DR+IE +E+++ T +++ P R EA +H Sbjct: 4 RQIILDTETTGFEHSRADNPDRMIEFAGLEMVNRQFTQNDLHLYIHPE-RDIPAEATAVH 62 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SR 122 GIT + L DKP F+ + + +DF + AE I HNAKFDVGF+NAE R+ +D Sbjct: 63 GITLDDLADKPVFADVAQQIFDFL--KGAELIIHNAKFDVGFLNAEFARVGLPNIDSVCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+++P +N L++LC R G+ S R HGAL+D LL VY+ M G + Sbjct: 121 VVDTLEMARKRYPGQKNSLDALCTRLGVDRSRRVLHGALIDCELLGGVYLAMTRGQFSL- 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL------FTRITKEELDEHDKTIQTLGKNA 235 +D F + + N + PL ++EE H+ + L K A Sbjct: 180 ------DDAFAADNAVSAGNAAKGALAAPLSAGKLKVQAASEEECAAHENYLDGLDKAA 232 >gi|93005683|ref|YP_580120.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis K5] gi|92393361|gb|ABE74636.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis K5] Length = 532 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 68/181 (37%), Positives = 111/181 (61%), Gaps = 7/181 (3%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTGLD K DR+IE+G VE++ T V++ P R E +++HGI+ Sbjct: 307 RQLIMDTETTGLDPQKGDRVIEVGIVEMIGRKFTGEKLHVYINPQ-RGMDEEVIRIHGIS 365 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIID 125 + FL DKP+F + +DF + AE IAHNA FD+ F+N E ++ D + ++ D Sbjct: 366 EAFLTDKPTFDQVAQSLYDFMD--GAEIIAHNASFDMNFLNMEFAKVGMHDFAERVKVTD 423 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L +A++++P +N L++L +R + R+ HGALLDS +L++VY+ M G Q+ G Sbjct: 424 SLVMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEILAEVYLAMT--GGQVTLGI 481 Query: 186 K 186 + Sbjct: 482 E 482 >gi|297250280|ref|ZP_06863987.2| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC 43768] gi|296839296|gb|EFH23234.1| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC 43768] Length = 253 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 13 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 71 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 72 IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 129 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q + Sbjct: 130 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 187 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E++ E K V + + K R + EL EH + + LG++ IW Sbjct: 188 LMGAVAEEKM---ETKPVAHTETKRSGKLKVIRADENELAEHGQYLDGLGESCIW 239 >gi|71083046|ref|YP_265765.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] gi|91762529|ref|ZP_01264494.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] gi|71062159|gb|AAZ21162.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] gi|91718331|gb|EAS84981.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] Length = 223 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 72/170 (42%), Positives = 105/170 (61%), Gaps = 4/170 (2%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M++++ D ETTGL ++ RI+EIG +EL + T F +L P RK S +AL++HG Sbjct: 1 MKEVILDTETTGLSVRDGHRIVEIGCIELENLIPTKNRFHCYLNPE-RKVSEKALEVHGY 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDEFL F I EF F +N + HNA+FD+ +N EL + K+ L+ ++D Sbjct: 60 TDEFLSTHKKFGDIVDEFLVFI--ENKRLVIHNAEFDLSHLNNELSLLGKEKLNSENVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL++AR K P S L++LCKRY I S R++H AL+D LL+ VYI ++ Sbjct: 118 TLALARDKFPGSPISLDALCKRYRIDNSKRTQHTALIDCDLLAKVYINLL 167 >gi|261380159|ref|ZP_05984732.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703] gi|284796997|gb|EFC52344.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703] Length = 245 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 130/236 (55%), Gaps = 15/236 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL +N DR++E +E+++ T+ +++ P R EA K+HG+T Sbjct: 4 RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ + Sbjct: 63 IEVLEAKNAPPFAQVGKQIADFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCK 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M ++ Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRQQ 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKNAIW 237 F E E K+TV I+ KR L + +EL H+K + LG+ +W Sbjct: 177 FDLMGGEAEEEGEVKQTV--IAETKRTSQLKVIKANADELAAHEKYLDDLGEACVW 230 >gi|254673235|emb|CBA08224.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha275] gi|325144796|gb|EGC67087.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240013] Length = 244 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 126/235 (53%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E++ E K V + + K R + EL EH + + LG+ IW Sbjct: 179 LMGAAAEEKM---ETKPVAHTETKRSGKLKVIRADENELAEHGRYLDGLGEACIW 230 >gi|325142705|gb|EGC65085.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 961-5945] gi|325198636|gb|ADY94092.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136] Length = 244 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + E++ E K V + + K R + EL EH + + LG+ IW Sbjct: 179 LMGEAAEEKM---ETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEACIW 230 >gi|118602424|ref|YP_903639.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567363|gb|ABL02168.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 222 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 114/178 (64%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65 R IV D ETTG++ S+ RIIEIG E++D T N + ++ P+ +N +++++HGI Sbjct: 3 RLIVLDTETTGIEPSEGHRIIEIGCTEIVDRQITENNEYHEYIQPS--RNVGDSVRIHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 TD+FL +KP F +I F + + A I HNA FD+GF+N EL+ I D D I Sbjct: 61 TDKFLTNKPKFKAIVKTFLTYI--EGATLIIHNAPFDLGFLNHELKLIGIDERIEDKCNI 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ID+L +++++ P + ++L++LC+R+ I S R+ HGALLD+ +L+ VY+ M G S + Sbjct: 119 IDSLELSKQQRPGTLHNLDALCRRFEINSSARTVHGALLDAKILAQVYLAMTGGQSTL 176 >gi|213582095|ref|ZP_03363921.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 172 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 71/166 (42%), Positives = 102/166 (61%), Gaps = 11/166 (6%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQ 172 >gi|253795564|ref|YP_003038660.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia cicadicola Dsem] gi|253739872|gb|ACT34207.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia cicadicola Dsem] Length = 182 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/166 (42%), Positives = 99/166 (59%), Gaps = 3/166 (1%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K+R+I+ D ETTGL K DR+IE+ A++L D +T T+ + P K S A +HGI Sbjct: 5 KIREIILDTETTGLSVKTDRLIELAAIKLEDGRRTPHTYHSYFNPQPVKVSRSAFNVHGI 64 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL DKP+F S EF +F E IAHNA+FD+ IN ELQ DP+D D Sbjct: 65 SNEFLSDKPAFKSCAREFLEFV--AGHELIAHNARFDLQIINRELQMAGADPIDAGCWRD 122 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +LSIA++ P+ N + +LCKR+ + + H A D LL+ VY Sbjct: 123 SLSIAKQLFPNRSNSMAALCKRFNLECETET-HSAARDCELLARVY 167 >gi|330719972|gb|EGG98425.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC2047] Length = 212 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 120/211 (56%), Gaps = 14/211 (6%) Query: 34 LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93 ++D T R + ++ P R A ++HGIT +FL DKP F+ I +EF F + AE Sbjct: 3 VIDRKLTGRHYHQYINPE-RDIDDGAAEVHGITSDFLADKPVFADIANEFLAFI--KGAE 59 Query: 94 WIAHNAKFDVGFINAELQRINKDPLDPSRI---IDTLSIARRKHPSSRNDLNSLCKRYGI 150 + HNA FDVGFI+ E + +N+ S I IDT+ +AR+KHP +N+L++LCKRYG+ Sbjct: 60 LVIHNAPFDVGFIDHEFRLLNQGHPKTSEICDIIDTIVMARKKHPGQKNNLDALCKRYGV 119 Query: 151 TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 S R HGALLD+ +L+DVY+ M G + + G +E + + + +S +R Sbjct: 120 DNSARDLHGALLDAEILADVYLLMTGGQTALMLG--ADEQAGGEAGQMVINRVSAERR-- 175 Query: 211 PL-FTRITKEELDEHDKTIQTLGK---NAIW 237 PL R + EEL H +Q L K + +W Sbjct: 176 PLKVIRASDEELAAHHDNLQQLEKVSGDCLW 206 >gi|319638369|ref|ZP_07993131.1| DNA polymerase subunit III [Neisseria mucosa C102] gi|317400118|gb|EFV80777.1| DNA polymerase subunit III [Neisseria mucosa C102] Length = 245 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 129/236 (54%), Gaps = 15/236 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL +N DR++E +E+++ T+ +++ P R EA K+HG+T Sbjct: 4 RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ + Sbjct: 63 IEVLEAKNAPPFAQVGKQIADFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCK 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M ++ Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRQQ 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKNAIW 237 F E E K T+ I+ KR L + +EL H+K + LG+ +W Sbjct: 177 FDLMGGEAEEEGEVKPTI--IAETKRTSQLKVIKADADELAAHEKYLDDLGEACVW 230 >gi|218461621|ref|ZP_03501712.1| DNA polymerase III subunit epsilon [Rhizobium etli Kim 5] Length = 115 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 62/117 (52%), Positives = 83/117 (70%), Gaps = 2/117 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 DEFLKDK +F+ + E FF +A+WIAHNA FD+GFINAE RI P+ P R+ Sbjct: 61 DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERV 115 >gi|304387081|ref|ZP_07369332.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria meningitidis ATCC 13091] gi|304338830|gb|EFM04933.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria meningitidis ATCC 13091] gi|325132669|gb|EGC55354.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190] gi|325138557|gb|EGC61120.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis ES14902] gi|325204491|gb|ADY99944.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240355] Length = 244 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IQVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E++ E K V + + K R + EL EH + + LG+ IW Sbjct: 179 LMGAAAEEKM---ETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEACIW 230 >gi|329118044|ref|ZP_08246757.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327465932|gb|EGF12204.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 247 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 130/245 (53%), Gaps = 26/245 (10%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL S + DRI+E +E+ T RT +++ P+ R EA +HGIT Sbjct: 5 RQIILDTETTGLYSDRGDRILEFAGIEMRKRRLTERTLHLYIHPD-RDIPEEAAAVHGIT 63 Query: 67 DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L +K P F+++ E DF + AE I HNA+FDVGF++ E +R+ ++ Sbjct: 64 LDTLAEKNAPKFAAVGQEIADFL--RGAELIIHNARFDVGFLDMEFERMGLPTIEELGCE 121 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM------MV 176 + DTL++AR K+P + L++LC R I S R HGAL+D LL++VY+ M +V Sbjct: 122 VTDTLAMAREKYPGQKASLDALCGRLDIDRSKRVYHGALIDCELLAEVYLAMTREQFDLV 181 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH----DKTIQTLG 232 GGS N N D + + P L++ + + EL H D+ Q G Sbjct: 182 GGSDDN-----NGDTPAQNTRTAAP---LVRTGRLKVIKADATELAAHAAILDEINQATG 233 Query: 233 KNAIW 237 + +W Sbjct: 234 GHCLW 238 >gi|325134669|gb|EGC57309.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399] Length = 244 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E++ E K V + + K R + EL H + + LG+ IW Sbjct: 179 LMGAAAEEKM---ETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIW 230 >gi|121635185|ref|YP_975430.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18] gi|120866891|emb|CAM10650.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18] Length = 253 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 13 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 71 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 72 IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 129 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q + Sbjct: 130 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 187 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E++ E K V + + K R + EL H + + LG+ IW Sbjct: 188 LMGAAAEEKM---ETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIW 239 >gi|262368670|ref|ZP_06061999.1| ribonuclease HI [Acinetobacter johnsonii SH046] gi|262316348|gb|EEY97386.1| ribonuclease HI [Acinetobacter johnsonii SH046] Length = 474 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 113/178 (63%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG ++ DRIIE+GA+E+++ T + +++ P +K ++ +HGI+ Sbjct: 247 RQLILDTETTGFYYQDGDRIIEVGAIEMVNRKLTGSSIHIYINP--KKPVGDSENVHGIS 304 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 D+FLKDKP + I + + + AE IAHNA FD+ F++ E +R L + + D Sbjct: 305 DDFLKDKPLYQEIADTLFAYL--KGAEIIAHNASFDMNFLDMEFKRAGFVALSEVCAVTD 362 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M G Q++F Sbjct: 363 TLAMAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILADVYLAMT--GGQVSF 418 >gi|332967672|gb|EGK06783.1| DNA-directed DNA polymerase III epsilon subunit [Kingella kingae ATCC 23330] Length = 252 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 132/244 (54%), Gaps = 20/244 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 + + +R+I+ D ETTG + DR+IE +E+++ T +++ P R +P Sbjct: 1 MTETPIRQIILDTETTGFEHSAAENPDRMIEFAGLEMVNRQFTKNNLHLYIHPQ-RDINP 59 Query: 58 EALKLHGITDEFLK--DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 +A+ +HGIT E L+ + P F+ + + +DF + AE I HNAKFDVGF++AE R+ Sbjct: 60 DAIAVHGITLEKLESENAPVFAEVAQQIFDFI--KGAELIIHNAKFDVGFLDAEFARVGL 117 Query: 116 DPLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++DTL +AR ++P +N L++LC R + S R HGAL+D LL +VY+ M Sbjct: 118 PKVKTICTVVDTLEMARDRYPGQKNSLDALCNRLDVDRSRRVLHGALIDCELLGEVYLAM 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNIS----LLKRDKPL-FTRITKEELDEHDKTIQ 229 G ++ F ++ E P I+ LL R + L + EEL EH++ + Sbjct: 178 TRGQFSLDAAFASD-----VAESSASPVIATTATLLPRPEYLKVQAASPEELAEHEEYLN 232 Query: 230 TLGK 233 L K Sbjct: 233 QLDK 236 >gi|15677367|ref|NP_274522.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|7226758|gb|AAF41870.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|261392239|emb|CAX49759.1| DNA polymerase III epsilon subunit [Neisseria meningitidis 8013] gi|308389659|gb|ADO31979.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha710] gi|316986028|gb|EFV64965.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76] gi|325130586|gb|EGC53333.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis OX99.30304] gi|325136592|gb|EGC59193.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579] gi|325140658|gb|EGC63175.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385] gi|325199883|gb|ADY95338.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76] gi|325201794|gb|ADY97248.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240149] gi|325208453|gb|ADZ03905.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NZ-05/33] Length = 244 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 125/235 (53%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IQVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E++ E K V + + K R + EL H + + LG+ IW Sbjct: 179 LMGAAAEEKM---ETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIW 230 >gi|330903518|gb|EGH34090.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. japonica str. M301072PT] Length = 147 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 66/142 (46%), Positives = 90/142 (63%), Gaps = 7/142 (4%) Query: 40 TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 T R F V+L P+ R++ A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA Sbjct: 6 TGRHFHVYLQPD-RESDEGAIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNA 62 Query: 100 KFDVGFINAELQRIN----KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR 155 FDVGFIN E + D ++DTL +AR +HP RN L++LCKRYG+ S R Sbjct: 63 AFDVGFINNEFALMGSQDRADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSGR 122 Query: 156 SKHGALLDSHLLSDVYIKMMVG 177 HGALLDS +L+DVY+ M G Sbjct: 123 ELHGALLDSEILADVYLAMTGG 144 >gi|261377592|ref|ZP_05982165.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685] gi|269146340|gb|EEZ72758.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685] Length = 244 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYIHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEGKNAPPFARVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I DTLS+AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q + Sbjct: 121 ITDTLSMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--QQFD 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + E+ K V + + K + + EL H++ + LG++ IW Sbjct: 179 LMGEAEEE---GPAAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGESCIW 230 >gi|59801359|ref|YP_208071.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA 1090] gi|240080918|ref|ZP_04725461.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA19] gi|268597034|ref|ZP_06131201.1| DNA polymerase III [Neisseria gonorrhoeae FA19] gi|59718254|gb|AAW89659.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA 1090] gi|268550822|gb|EEZ45841.1| DNA polymerase III [Neisseria gonorrhoeae FA19] Length = 244 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 128/235 (54%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L++K P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 +T E+ + K V + + K + + EL H++ + LG+ IW Sbjct: 179 LMGETEEE---EPTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIW 230 >gi|349620|gb|AAA17435.1| DNA polymerase III epsilon subunit [Buchnera aphidicola] Length = 179 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/178 (47%), Positives = 112/178 (62%), Gaps = 11/178 (6%) Query: 5 NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R IV D ETTG++S N RIIEIGA+E+++ T + F ++ PN R +A Sbjct: 3 NTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIESDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGITD+FL DKPSF I +F+++ +N+E I HNA FDVGFIN E + K D Sbjct: 62 SKIHGITDDFLSDKPSFKDIAKDFFNYI--KNSELIIHNASFDVGFINQEFSMLTKKIQD 119 Query: 120 PSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S IIDTL IAR+ P +N L++LC RY I SHR HGA+LD+ LL +Y+ M Sbjct: 120 ISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLLM 177 >gi|196003864|ref|XP_002111799.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens] gi|190585698|gb|EDV25766.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens] Length = 289 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/171 (42%), Positives = 104/171 (60%), Gaps = 5/171 (2%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R++V D ETTGL + RIIEIG +EL+D+ T+RTFQ ++ P S A ++H + Sbjct: 13 LREVVLDTETTGLSVRTGHRIIEIGCLELIDHQPTSRTFQCYINPKF-PVSERAFEVHHL 71 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +++FL+ P+F I +F DF E I HN FD+ FIN E Q++N + R+ID Sbjct: 72 SNKFLEGFPTFDGIVQDFRDFIQEDT--LIIHNGHFDIKFINNEFQKLNIPEISFERVID 129 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRS-KHGALLDSHLLSDVYIKMM 175 T+ +AR+ +P L+SLC R+ I S RS HGAL D LL VY K++ Sbjct: 130 TMLMARKLYPRQPASLDSLCDRFNIDKSSRSLGHGALTDVKLLQLVYAKLL 180 >gi|332978349|gb|EGK15074.1| DNA polymerase III, epsilon subunit [Psychrobacter sp. 1501(2011)] Length = 577 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 107/177 (60%), Gaps = 5/177 (2%) Query: 3 RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R R+++ D ETTGLD+ K DR+IE+G +EL++ T V++ P R E ++ Sbjct: 301 RGKTGRQLIMDTETTGLDALKGDRVIEVGIIELVNRKFTGEKLHVYINPE-RGMDDEVIR 359 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDP 120 +HGIT+ FL DKP F + ++F AE IAHNA FD+ F++ E R+ D + Sbjct: 360 VHGITEAFLADKPKFKEVAKPLYEFM--LGAELIAHNAPFDMSFLSMEFDRVGLSDFAEK 417 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + D+L +A++++P +N L++L +R + R+ HGALLDS +L++VY+ M G Sbjct: 418 VTVTDSLVMAKQQYPGQKNTLDALVRRLNVGKMDRTFHGALLDSEILAEVYLAMTGG 474 >gi|194098390|ref|YP_002001448.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae NCCP11945] gi|239998794|ref|ZP_04718718.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae 35/02] gi|240112723|ref|ZP_04727213.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae MS11] gi|240115471|ref|ZP_04729533.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID18] gi|240123321|ref|ZP_04736277.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID332] gi|240128023|ref|ZP_04740684.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae SK-93-1035] gi|254493581|ref|ZP_05106752.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291] gi|260440719|ref|ZP_05794535.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae DGI2] gi|268594640|ref|ZP_06128807.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268598788|ref|ZP_06132955.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11] gi|268601147|ref|ZP_06135314.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18] gi|268681945|ref|ZP_06148807.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332] gi|268686413|ref|ZP_06153275.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035] gi|291044028|ref|ZP_06569744.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2] gi|293399220|ref|ZP_06643385.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62] gi|193933680|gb|ACF29504.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae NCCP11945] gi|226512621|gb|EEH61966.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291] gi|268548029|gb|EEZ43447.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268582919|gb|EEZ47595.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11] gi|268585278|gb|EEZ49954.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18] gi|268622229|gb|EEZ54629.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332] gi|268626697|gb|EEZ59097.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035] gi|291012491|gb|EFE04480.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2] gi|291610634|gb|EFF39744.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62] gi|317164085|gb|ADV07626.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae TCDC-NG08107] Length = 244 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 128/235 (54%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L++K P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 +T E+ + K V + + K + + EL H++ + LG+ IW Sbjct: 179 LMGETEEE---EPTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIW 230 >gi|254456100|ref|ZP_05069529.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083102|gb|EDZ60528.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 220 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 5/170 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+++V D ETTG+ K RI+EIG +EL + T F +L P RK S +AL++HG Sbjct: 1 MKEVVLDTETTGISVKEGHRIVEIGCIELDNLIPTKNRFHCYLNPE-RKVSEKALEVHGY 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDEFL ++ FS I +F F ++ I HNA+FD+G +N EL K ++ + I+D Sbjct: 60 TDEFLSEQKKFSDIGEQFLAFI--KDKRLIIHNAEFDLGHLNNELSIFGKKKIN-NEIVD 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR K P S L++LCKRY I S R++H AL+D LLS VYI ++ Sbjct: 117 TLILARDKFPGSPVSLDALCKRYRIDNSIRTQHTALIDCDLLSKVYINLI 166 >gi|294788746|ref|ZP_06753987.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC 29453] gi|294483228|gb|EFG30914.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC 29453] Length = 272 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/182 (40%), Positives = 104/182 (57%), Gaps = 8/182 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 MI R+I+ D ETTGL + DR+IE +E+++ T R + + P R+ S Sbjct: 1 MILDKDKRQIILDTETTGLYANAAENPDRLIEFAGLEMMNRQLTGRNLHLLIHPQ-REIS 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 EA +H IT L DKP F+ + + +DF + AE I HNAKFDVGF+NAE R+ Sbjct: 60 EEATAVHNITLSQLVDKPIFAQVAQQIFDFI--KGAELIIHNAKFDVGFLNAEFARVGLP 117 Query: 117 PLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ I DTL +A+ + +N L++LC R G+ S R HGAL+D LLS+VY+ M Sbjct: 118 NVETICEITDTLEMAKNLYHGQKNSLDALCNRLGVDRSKRVFHGALIDCELLSEVYLGMT 177 Query: 176 VG 177 G Sbjct: 178 RG 179 >gi|330901691|gb|EGH33110.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. japonica str. M301072PT] Length = 209 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/188 (39%), Positives = 112/188 (59%), Gaps = 9/188 (4%) Query: 53 RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 R++ A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA FDVGFIN E Sbjct: 4 RESDEGAIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFAL 61 Query: 113 I-NKDPLDPSR---IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + ++D D ++ ++DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+ Sbjct: 62 MGSQDRADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILA 121 Query: 169 DVYIKMMVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRD-KPL-FTRITKEELDEHD 225 DVY+ M G + ++ G ++ + + I L D KP R ++ EL EH+ Sbjct: 122 DVYLAMTGGQTSLSLAGNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHE 181 Query: 226 KTIQTLGK 233 + T+ K Sbjct: 182 VRMSTIAK 189 >gi|254670687|emb|CBA06809.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha153] Length = 244 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 125/235 (53%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M ++ Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 F E + K V + + K + + EL H+K + LG+ IW Sbjct: 177 FDL-MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHEKYLDGLGEACIW 230 >gi|240016725|ref|ZP_04723265.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA6140] Length = 244 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 126/235 (53%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L++K P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL+IAR P + L++LC R+ + S R HGAL+D LL +VY+ M ++ Sbjct: 121 VTDTLAIAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 F E + K V + + K + + EL H++ + LG+ IW Sbjct: 177 FDL-MGETEEEETTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIW 230 >gi|257454857|ref|ZP_05620108.1| bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit [Enhydrobacter aerosaccus SK60] gi|257447790|gb|EEV22782.1| bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit [Enhydrobacter aerosaccus SK60] Length = 595 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 66/172 (38%), Positives = 103/172 (59%), Gaps = 5/172 (2%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG +++N DRIIE+G VE+++ T V++ P E +++HGI Sbjct: 366 RQLILDTETTGFEAQNGDRIIEVGIVEMINRRFTGEKLHVYINPKIEMGE-EVIRVHGIH 424 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125 + FL D P F + +DF Q AE IAHNA FD+ F+ AE R+ ++ + + D Sbjct: 425 NAFLNDMPVFEQVGEAIYDFL--QGAELIAHNAGFDMSFLQAEFARLGLPDINQTVTVTD 482 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +L+IA+R RN L++L KR + R+ HGALLD+ +L++VY+ M G Sbjct: 483 SLAIAKRMFAGQRNTLDALVKRLNVGKQDRTFHGALLDAEILAEVYLAMTGG 534 >gi|240014290|ref|ZP_04721203.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae DGI18] gi|240117765|ref|ZP_04731827.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID1] gi|240121853|ref|ZP_04734815.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID24-1] gi|240125570|ref|ZP_04738456.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae SK-92-679] gi|268603465|ref|ZP_06137632.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1] gi|268684159|ref|ZP_06151021.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679] gi|268587596|gb|EEZ52272.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1] gi|268624443|gb|EEZ56843.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679] Length = 244 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L++K P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M ++ Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 F E + K V + + K + + EL H++ + LG+ IW Sbjct: 177 FDL-MGETEEEETTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIW 230 >gi|265993833|ref|ZP_06106390.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] gi|262764814|gb|EEZ10735.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] Length = 143 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/144 (41%), Positives = 90/144 (62%), Gaps = 4/144 (2%) Query: 101 FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 FD+GFINAEL R+++ + I+DTL++ARRKHP N L++LCKRYGI SHR+ HGA Sbjct: 2 FDLGFINAELARLDQAEITSEHIVDTLALARRKHPIGPNSLDALCKRYGIDNSHRTLHGA 61 Query: 161 LLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEK--KTVPNISLLKRDKPLFTRITK 218 LLD+ +L++VYI+ ++GG Q G + + + P + L R +PL RI+ Sbjct: 62 LLDAQILAEVYIE-LIGGKQTALGLTMESGSAGGDSRGNGSAP-VVLAARPRPLPPRISD 119 Query: 219 EELDEHDKTIQTLGKNAIWDRYIS 242 E H ++ +G A+W +Y+S Sbjct: 120 AERAAHAALVEKMGDKAVWKKYLS 143 >gi|218768496|ref|YP_002343008.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491] gi|254805280|ref|YP_003083501.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis alpha14] gi|121052504|emb|CAM08843.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491] gi|254668822|emb|CBA06831.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis alpha14] gi|319410744|emb|CBY91127.1| DNA polymerase III epsilon subunit [Neisseria meningitidis WUE 2594] gi|325127153|gb|EGC50103.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568] Length = 244 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M ++ Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 F E + K V + + K + + EL H + + LG+ IW Sbjct: 177 FDL-MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHGQYLDGLGEACIW 230 >gi|325205739|gb|ADZ01192.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M04-240196] Length = 244 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M ++ Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAM----TRRQ 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 F E + K V + + K + + EL H + + LG+ IW Sbjct: 177 FDL-MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHGQYLDGLGEACIW 230 >gi|225024402|ref|ZP_03713594.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC 23834] gi|224942783|gb|EEG23992.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC 23834] Length = 240 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 67/171 (39%), Positives = 101/171 (59%), Gaps = 6/171 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+I+ D ETTG ++DR+IE +E++D T +++ P R EA K+HGI Sbjct: 4 LRQIILDTETTGFYYDRDDRLIEFAGLEMIDRRLTGNYLHLYVHPE-RDIPEEAAKVHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T + L+ KP F+ I + DF E + HNA FDVGF+NAE +R ++ + + Sbjct: 63 TLDQLEGKPKFAEIGQQIADFI--AGTELVIHNAPFDVGFLNAEFRRAGLPSVEELTANV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DTL +AR +P +N L++LC R + S R HGAL+D LLS+VY+ M Sbjct: 121 VDTLVMARAMYPGQKNSLDALCTRLEVDRSKRVFHGALIDCELLSEVYLGM 171 >gi|296113099|ref|YP_003627037.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4] gi|295920793|gb|ADG61144.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4] gi|326560092|gb|EGE10482.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 46P47B1] gi|326560475|gb|EGE10857.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169] gi|326561678|gb|EGE12015.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 103P14B1] gi|326564194|gb|EGE14430.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 12P80B1] gi|326565793|gb|EGE15955.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1] gi|326570446|gb|EGE20486.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8] gi|326571129|gb|EGE21153.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7] gi|326573423|gb|EGE23391.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 101P30B1] gi|326575681|gb|EGE25604.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72] gi|326577147|gb|EGE27041.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E] Length = 432 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 105/177 (59%), Gaps = 5/177 (2%) Query: 3 RKNKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R R+++ D ETTG ++ DRI+E+G VEL+ T V++ P + ++ Sbjct: 207 RDAPERQLIMDTETTGFNEAGGDRIVEVGIVELVGRKFTGNILHVYINPE-KHMDDAVIQ 265 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI++ F+ DKP F+ + + ++F +E IAHNA FD+ F+N E R S Sbjct: 266 VHGISNAFVADKPKFAEVAQQIYEFM--AGSEVIAHNAAFDMKFLNMEFNRAGLSNFANS 323 Query: 122 -RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++ DTL++A++ +P +N L++L KR G+ R+ HGALLDS +L++VY+ M G Sbjct: 324 VKVTDTLALAKQMYPGQKNSLDALVKRLGVGQKDRTFHGALLDSEILAEVYLAMTGG 380 >gi|330999159|ref|ZP_08322878.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] gi|329575359|gb|EGG56903.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] Length = 248 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 9/157 (5%) Query: 22 KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFS 81 + DRIIEIG VEL ++ T++ F ++ P R+ E +++H IT+EFL KP F+ I Sbjct: 5 EGDRIIEIGCVELGEHGLTDKNFHEYIDPE-RQMEAEVIRVHKITNEFLVGKPKFADIAD 63 Query: 82 EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----SRIIDTLSIARRKHPSS 137 +F +F Q A I HNA+FD+GF+N EL+++ K ++ IID++ +A+ P Sbjct: 64 KFIEFV--QGARLIIHNAQFDIGFLNEELRKLGKPSMEEICGKDNIIDSMELAKAAFPQM 121 Query: 138 RNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYI 172 N L++LCKR I + R K HGALLD+ LL VY+ Sbjct: 122 HNSLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYL 158 >gi|323191554|gb|EFZ76814.1| DNA polymerase III subunit epsilon domain protein [Escherichia coli RN587/1] Length = 155 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 93/151 (61%), Gaps = 11/151 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150 ++ D+L++AR+ P RN L++LC RY I Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEI 154 >gi|213021700|ref|ZP_03336147.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213612768|ref|ZP_03370594.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 164 Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 11/157 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156 ++ D+L++AR+ P RN L++LC RY I S R+ Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRT 163 >gi|71281267|ref|YP_268980.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H] gi|71147007|gb|AAZ27480.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H] Length = 256 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 129/246 (52%), Gaps = 28/246 (11%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-----PEALK 61 R I+ D ETTG++ + RI+EIG VE+++ T RT+ ++ P ++ E + Sbjct: 15 RLIILDTETTGINPREGHRIVEIGCVEMINRQLTGRTYHAYIKPLDQRGQVFQMEQEVIN 74 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN------- 114 +HG+T+EFL DKP FS + EF DF + AE + HN+KFDVGF++ E N Sbjct: 75 IHGLTNEFLADKPIFSQVVHEFIDFI--RGAELVIHNSKFDVGFMDHEFSLFNSMGRSQD 132 Query: 115 KDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVY 171 K P+ D I DTL +++ + S + L+ L + Y + + R+ HGAL+D+ LL+ VY Sbjct: 133 KVPMTEDICTITDTLKVSKDELGSPKT-LDYLARFYRVDKLVDRTYHGALIDAQLLAYVY 191 Query: 172 IKMMVGGSQINF--GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 I+M S N G TN D + +S R+K + +EL H + + Sbjct: 192 IEMTRKQSSFNLSSGDGTNAD------ANAIRRVS-STRNKLKVIAASADELVAHTERVA 244 Query: 230 TLGKNA 235 +GK Sbjct: 245 VIGKKG 250 >gi|294670031|ref|ZP_06734988.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308152|gb|EFE49395.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 244 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 65/172 (37%), Positives = 99/172 (57%), Gaps = 8/172 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + + DR++E +E+ T +++ P+ R EA +HGIT Sbjct: 5 RQIILDTETTGLYADRGDRMLEFAGIEMKKRQLTMNNLHLYIHPD-RDIPEEAAAVHGIT 63 Query: 67 DEFLKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L+++ P F + + DF + AE I HNA+FDVGF+N E R+ ++ Sbjct: 64 LEQLEERNAPKFEQVGRQIADFL--RGAELIIHNARFDVGFLNMEFARMGLPSIEELDCE 121 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I DTL++AR K P + L++LC R + S R HGAL+D LL++VY+ M Sbjct: 122 ITDTLAMAREKFPGQKASLDALCSRLDVDRSKRVLHGALIDCELLAEVYLAM 173 >gi|116334989|ref|YP_802484.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii PV] gi|116235270|dbj|BAF35118.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii PV] Length = 181 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/172 (41%), Positives = 105/172 (61%), Gaps = 8/172 (4%) Query: 7 MRKIVF-DIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M++I+F D+ETTGL ++ DRIIEIG VE+++ T R F + P K + A +HG Sbjct: 1 MKRIIFLDVETTGLFVEHGDRIIEIGCVEVINGHLTGRVFHSYFNPE-VKITQGAFNVHG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPS 121 I D+FL KP F +EF F N N+ IAHNAKFD+ FIN E+ N K + + Sbjct: 60 IKDDFLLLKPMFYEKINEFIGFIN--NSTIIAHNAKFDINFINKEIYLTNFKIKKIQNYA 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I+D+L + R+ +P +N+LN LC ++ + + + HGAL D+ LL+ + IK Sbjct: 118 NILDSLLLFRKLYPRKKNNLNDLCLKFNLIKNKKRIHGALNDAFLLAVLIIK 169 >gi|148244527|ref|YP_001219221.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326354|dbj|BAF61497.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius okutanii HA] Length = 223 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 112/178 (62%), Gaps = 8/178 (4%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65 R IV D ETTG+ S+ RIIEIG +E++D T N + ++ PN +N +++++HGI Sbjct: 3 RLIVLDTETTGIKPSEGHRIIEIGCIEIIDRQITKNNKYHEYIQPN--RNVGDSVRIHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123 TD+FL KP F + EF + E I HNA FD+GF+N EL+ IN+ D I Sbjct: 61 TDKFLTKKPKFKEVVEEFLAYIKE--TTLIIHNAPFDLGFLNHELKLIGINERIEDKCTI 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ID+L +++++ P + ++L+SLC+R+ I S R+ HGALLD +L+ VY+ M G S + Sbjct: 119 IDSLELSKQQRPGTLHNLDSLCRRFKIDSSARTVHGALLDVQILAQVYLAMTGGQSTL 176 >gi|190576387|ref|YP_001974232.1| putative exonuclease [Stenotrophomonas maltophilia K279a] gi|190014309|emb|CAQ47956.1| putative exonuclease [Stenotrophomonas maltophilia K279a] Length = 169 Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 71/167 (42%), Positives = 97/167 (58%), Gaps = 9/167 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D ETTG+ + R+IEIGAVEL+D T R F +L P RK A ++HGI+ Sbjct: 3 RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDWGAQRVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRI 123 D L KP FSS +E +F + +E +AHNA FDVGF++ EL R++ P RI Sbjct: 62 DAMLVGKPLFSSKAAELLEFL--RGSEMVAHNATFDVGFLDNEL-RLSGIPGTLAQHCRI 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +L +AR + P N L+ + +R I S R HGAL D+HLL+ V Sbjct: 119 TCSLKLARGRWPGQGNKLDDVLQRLRIP-SQRGLHGALKDAHLLAQV 164 >gi|194367724|ref|YP_002030334.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia R551-3] gi|194350528|gb|ACF53651.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia R551-3] Length = 169 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/167 (42%), Positives = 96/167 (57%), Gaps = 9/167 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D ETTG+ + R+IEIGAVEL+D T R F +L P RK A ++HGI+ Sbjct: 3 RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDWGAQRVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRI 123 D L KP FSS +E DF + +E +AHNA FDVGF++ EL R+ P RI Sbjct: 62 DAMLVGKPLFSSKAAELLDFL--RGSEMVAHNATFDVGFLDNEL-RLAGIPGTLAQHCRI 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +L +AR + P N L+ + +R I +R HGAL D+HLL+ V Sbjct: 119 TCSLKLARGRWPGQGNKLDDVLQRLRIP-GNRGLHGALKDAHLLAQV 164 >gi|116515093|ref|YP_802722.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256947|gb|ABJ90629.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 231 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/192 (39%), Positives = 115/192 (59%), Gaps = 12/192 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI+KN +R++ DIETTG++ N +IIEIG +E ++ T R +L P R Sbjct: 1 MIKKN-LRQVFLDIETTGMNKYGCIYLNHKIIEIGIIETINRKYTGRYIHYYLYPQ-RSI 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE--LQRI 113 A K+HGI++ FL +KP+F I+ E ++F +N+E I HN+ FD+ F++ E L I Sbjct: 59 ESSAYKIHGISESFLSNKPTFKDIYKEIFNFI--KNSEIIVHNSNFDISFLDYEFFLLNI 116 Query: 114 NKDPLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + S I DTL IAR+ P +N+L++LC RY IT +R+ H ALLD+ +L +Y+ Sbjct: 117 GINKIKTFSTITDTLFIARKLFPGKKNNLDALCARYKITNINRNFHSALLDAKILMKLYM 176 Query: 173 KMMVGGSQINFG 184 M +INF Sbjct: 177 YMTSIQKEINFS 188 >gi|319779077|ref|YP_004129990.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] gi|317109101|gb|ADU91847.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] Length = 239 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 133/242 (54%), Gaps = 26/242 (10%) Query: 7 MRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL K+ R+IE+G E++D T Q++ P R+ EALK+HGI Sbjct: 1 MRQICLDTETTGLSWKDGHRVIELGCCEIIDGLLTGNNLQIYFNPE-REVDEEALKVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SR 122 ++EFL DKP FS + ++ ++A+ + HNA+FD+GF+N EL K L+ + Sbjct: 60 SNEFLSDKPLFSDKADKIIEYL--KDAQLVIHNAEFDMGFLNYELSLCGKPKLETFIHNP 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITI-------SHRSKHGALLDSHLLSDVYIKMM 175 +IDT +AR SS + +L K Y + + R HGALLD+ +L+ V+IK+ Sbjct: 118 VIDTRELARENGFSSA--VITLNKLYKDLVDESYKQNTDRELHGALLDAVMLAKVFIKLN 175 Query: 176 VGGSQI----NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 G ++I + + ++D F + NI L K + L + ++EE+ H+ I TL Sbjct: 176 SGQNEIFLETSARSEASDDLGFSSQ-----NIDLSKLNLKLI-KASEEEIAAHNDYIATL 229 Query: 232 GK 233 K Sbjct: 230 SK 231 >gi|254522385|ref|ZP_05134440.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] gi|219719976|gb|EED38501.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] Length = 169 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/167 (41%), Positives = 96/167 (57%), Gaps = 9/167 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D ETTG+ + R+IEIGAVEL+D T R F +L P RK A ++HGI+ Sbjct: 3 RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDRGAQRVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRI 123 D L KP FSS +E F + +E +AHNA FDVGF++ EL R++ P RI Sbjct: 62 DAMLVGKPLFSSKAAELLAFL--RGSEMVAHNATFDVGFLDNEL-RLSGIPGTLAQHCRI 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +L +AR + P N L+ + +R I +R HGAL D+HLL+ V Sbjct: 119 TCSLKLARGRWPGQGNKLDDVLQRLRIP-GNRGLHGALKDAHLLAQV 164 >gi|303258008|ref|ZP_07344017.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] gi|330999422|ref|ZP_08323136.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] gi|302859351|gb|EFL82433.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] gi|329574848|gb|EGG56407.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] Length = 196 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 66/171 (38%), Positives = 93/171 (54%), Gaps = 5/171 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R N+ R+I D ETTG+ DRI+E+ A+E+ D +F F+ P RK ++ Sbjct: 18 RANRKRRIFLDTETTGMSQATDRIVEVCAIEVDDDFNEIDSFHAFINPQ-RKVPWFVTRI 76 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HG+ +EFL DKP FS I + F + +E AHN FD G +NAE R L+ Sbjct: 77 HGLNNEFLDDKPIFSDIGRDLLLFL--EGSELWAHNMSFDAGMLNAEFARNRLPTLEKVD 134 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ TL +AR P +N L++L R+ I S R HGA++D+ LL VY Sbjct: 135 CRLNCTLQLARSTFPGQKNSLDALLDRFAIDRSERRLHGAMIDTRLLVKVY 185 >gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3] gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3] Length = 1444 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 98/161 (60%), Gaps = 8/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + IIE+ AV++ D +R F +F P G S ++L GITDE Sbjct: 430 VVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMLFANP-GHPLSVTTMELTGITDEM 487 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P + + F D+ +A +AHNA FD+GF+NA L R+ + + + +IDTL + Sbjct: 488 VKDAPKPDEVLARFVDWAG--DATLVAHNASFDIGFLNAGLARMGRGKI-ANPVIDTLEL 544 Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167 AR +P +N LN+LCK++ I ++ HR+ + A HLL Sbjct: 545 ARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLL 585 >gi|257458230|ref|ZP_05623380.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580] gi|257444340|gb|EEV19433.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580] Length = 216 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/154 (42%), Positives = 90/154 (58%), Gaps = 8/154 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD ETTGLD RI+EIGAV+ D + V + P EA K++GITDE Sbjct: 17 IAFDTETTGLDPAAGRIVEIGAVKF-DRRGIAARYNVLINPE-IPMPEEAGKVNGITDEM 74 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LKDKP +++F +F+DF +AHNA FD+ +INAEL+RI K PL ++++DT Sbjct: 75 LKDKPLIAAVFPDFFDFIG--TGVLVAHNAPFDINYINAELKRIGKSPLG-NKVVDTRIF 131 Query: 130 ARRKHPS-SRNDLNSLCKRYGITI--SHRSKHGA 160 A+ P S L L ++GIT +HR++ A Sbjct: 132 AKEVFPGLSSYALQDLAVQFGITALEAHRAEDDA 165 >gi|319779076|ref|YP_004129989.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] gi|317109100|gb|ADU91846.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] Length = 186 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/193 (35%), Positives = 110/193 (56%), Gaps = 27/193 (13%) Query: 7 MRKIVFDIETTGLDSK---NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 MR + D ETTG SK RIIE+G VE++ K+ R ++ P+ R++ A ++H Sbjct: 1 MRYVCLDTETTG--SKYYLGHRIIELGCVEVICGQKSGRELHMYFNPD-RRSDFGAFRVH 57 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPL 118 I+DEFL DKP F+ E DF + + HNA FD+GF+N E + ++N+ + Sbjct: 58 KISDEFLLDKPRFADCVDEIIDFL--YGSTLVIHNAPFDMGFLNYEFKISGQPKLNEFVV 115 Query: 119 DPSRIIDTLSIARRK-----HPSSRNDLNSLCKR-----YGITISHRSKHGALLDSHLLS 168 D +IDT+ + R K HP+ R L++L K Y + HR+ HGAL+D+ +L+ Sbjct: 116 D---VIDTVILGRMKLPKKLHPNQRYSLDALYKTLVRSDYNPAL-HRNPHGALIDARMLA 171 Query: 169 DVYIKMMVGGSQI 181 D++I++ +G +I Sbjct: 172 DLFIRLNMGQEEI 184 >gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402] gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402] Length = 1434 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 103/168 (61%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 +VFD+ETTGL S+ D+IIE+ AV++ D ++ F+ F P R N E +K L GITD+ Sbjct: 419 VVFDVETTGLSSQYDKIIELAAVKVKDGEIIDK-FERFSNPGERLN--ETIKNLTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P S+ ++F DF +A ++AHNA FD+GFI+ R+ P + + +IDTL Sbjct: 476 MLIDAPPIESVLNDFKDFVG--DAIYVAHNASFDMGFIDTGFDRLGYGPTE-NGVIDTLE 532 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R + ++ LN L K+YG+ ++ H A+ D+ + +++KM+ Sbjct: 533 LSRTINTEMGKHGLNFLAKKYGVELTQH--HRAIYDAETTAHIFVKML 578 >gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61] gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52] gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61] gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52] Length = 1444 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 97/161 (60%), Gaps = 8/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + IIE+ AV++ D +R F F P G S ++L GITDE Sbjct: 430 VVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANP-GHPLSVTTMELTGITDEM 487 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P + + F D+ +A +AHNA FD+GF+NA L R+ + + + +IDTL + Sbjct: 488 VKDAPKPDEVLARFVDWAG--DATLVAHNASFDIGFLNAGLARMGRGKI-ANPVIDTLEL 544 Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167 AR +P +N LN+LCK++ I ++ HR+ + A HLL Sbjct: 545 ARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLL 585 >gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426] gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus kaustophilus HTA426] Length = 1444 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 96/161 (59%), Gaps = 8/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + IIE+ AV++ D +R F F P G S ++L GITDE Sbjct: 430 VVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANP-GHPLSVTTMELTGITDEM 487 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P + + F D+ +A +AHNA FD+GF+N L R+ + + + +IDTL + Sbjct: 488 VKDAPKPDEVLARFVDWAG--DATLVAHNASFDIGFLNTGLARMGRGKI-ANPVIDTLEL 544 Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167 AR +P +N LN+LCK++ I ++ HR+ + A HLL Sbjct: 545 ARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLL 585 >gi|161870374|ref|YP_001599545.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 053442] gi|161595927|gb|ABX73587.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 053442] Length = 187 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 11/180 (6%) Query: 62 LHGITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HG+T E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 1 MHGLTIEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVE 58 Query: 120 P--SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Sbjct: 59 ELGCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR- 117 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 Q + + E++ E K V + + K R + EL H + + LG+ IW Sbjct: 118 -RQFDLMGEAAEEKM---ETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIW 173 >gi|262365378|gb|ACY61935.1| DNA polymerase III, epsilon chain [Yersinia pestis D182038] Length = 128 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 53/114 (46%), Positives = 75/114 (65%), Gaps = 8/114 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 HGI+DEFL DKP+F+ I EF DF + AE + HNA FD+GF++ E + + +D Sbjct: 66 HGISDEFLADKPTFADITPEFLDFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 117 >gi|296132882|ref|YP_003640129.1| DNA polymerase III, alpha subunit [Thermincola sp. JR] gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR] Length = 1442 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 96/168 (57%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG D IIEIGAV++ +R F F+CP GR+ PE +L GIT+ Sbjct: 431 VVFDLETTGFSPVTDEIIEIGAVKIHGNKILDR-FSAFVCP-GREIPPEVQELTGITNNM 488 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128 + D P + + +F DF +A +AHNA+FD GF+ A +++I N+ P ++DTL Sbjct: 489 VSDAPPIAEVLPKFIDFVG--DAVLVAHNAQFDTGFLRANMEKILNRTLAQP--VLDTLG 544 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P +N L +L K + + + + H A+ D+ + + IK + Sbjct: 545 LARGLFPDMKNHKLKTLAKEFNVKLENH--HRAVDDAEATAQLLIKFL 590 >gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus coleocola ACS-139-V-Col8] gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus coleocola ACS-139-V-Col8] Length = 1435 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 98/167 (58%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL S D+IIE+ AV++ + + TF+ F+ PN + S +L GIT+ Sbjct: 421 VVFDVETTGLSSVYDKIIELAAVKMKE-GQVIDTFEAFINPN-QPLSSFTTELTGITNAM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D P + +F+DF QN +AHNA FD+GF+N +RI + P +IDTL + Sbjct: 479 VEDAPQEDVVLKDFYDF--SQNTILVAHNASFDIGFLNKGYERIGIEN-TPLPVIDTLEL 535 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R +P ++ LN+L KRYG+ + H A+ DS + K++ Sbjct: 536 SRMVNPHLKSHRLNTLAKRYGVNLEQH--HRAVYDSETTGYLMYKLL 580 >gi|213162306|ref|ZP_03348016.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 145 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 55/136 (40%), Positives = 82/136 (60%), Gaps = 11/136 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 121 -SRIIDTLSIARRKHP 135 ++ D+L++AR+ P Sbjct: 127 FCKVTDSLALARKIVP 142 >gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1] gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1] Length = 1442 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 98/167 (58%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIEI AV++ D + TF+ F P GR S ++L ITD+ Sbjct: 428 VVFDVETTGLSAVYDTIIEIAAVKIQD-GEVVDTFERFANP-GRPLSNTIIELTHITDDM 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LKD P S + E+ ++ +A +AHNA FD+GF+N L++ P + +IDTL + Sbjct: 486 LKDAPDISEVLKEYNEWIG--DAVLVAHNASFDIGFLNVGLKKAGL-PKSNNPVIDTLEL 542 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +P +N LN+L K++ + ++ H A+ D+ +++KM+ Sbjct: 543 GRFLYPDFKNYRLNTLAKKFNVELTQH--HRAIYDTEATGQIFLKML 587 >gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 03V1-b] gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 03V1-b] Length = 1424 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 8/196 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + L ITDE Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 465 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ + + +F DF+ Q+ HN +FD+GF+NA L+R N D + ++DTL + Sbjct: 466 VQNADDENIVIRQFQDFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522 Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +R HP +R+ L+SL K+Y + + HR+ A +L+ + + N G Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582 Query: 187 TNEDRFFKEEKKTVPN 202 + +F + K+ PN Sbjct: 583 NDYAKFGQVYKRAKPN 598 >gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1] gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type) [Anoxybacillus flavithermus WK1] Length = 1430 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 98/161 (60%), Gaps = 8/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ + +R F+ F P+ S ++L ITD+ Sbjct: 416 VVFDVETTGLSAVYDTIIELAAVKVKNGEIIDR-FESFANPH-HPLSATTIELTKITDDM 473 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LKD P + +F+ + + + +AHNA FD+GF+NA ++IN+ + + +IDTL + Sbjct: 474 LKDAPDVEEVLEKFYHWID--DCVLVAHNATFDIGFLNAGFKKINRGKVT-NPVIDTLEL 530 Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167 AR +P +N LN+LCK++ I ++ HR+ + A +LL Sbjct: 531 ARYLYPELKNHRLNTLCKKFNIELTQHHRAIYDAEATGYLL 571 >gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2] gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2] Length = 1463 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 7/177 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ R F+ F P+ R S ++L GITD+ Sbjct: 423 VVFDVETTGLSAVYDTIIELAAVKVKGGEIIER-FERFANPH-RPLSATIIELTGITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LKD P + +F ++ + +AHNA FD+GFIN +R+ + +IDTL + Sbjct: 481 LKDAPEVEEVIRDFKEWVGDHT--LVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLEL 538 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 R +P +N LN+LCK++ I ++ H A+ D+ + +KM+ ++ N + Sbjct: 539 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATGYLLVKMLKDAAEKNILY 593 >gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580] gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580] gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC 14580] gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580] Length = 1438 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 7/177 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ R F+ F P+ R S ++L GITD+ Sbjct: 423 VVFDVETTGLSAVYDTIIELAAVKVKGGEIIER-FERFANPH-RPLSATIIELTGITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LKD P + +F ++ + +AHNA FD+GFIN +R+ + +IDTL + Sbjct: 481 LKDAPEVEEVIRDFKEWVGDHT--LVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLEL 538 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 R +P +N LN+LCK++ I ++ H A+ D+ + +KM+ ++ N + Sbjct: 539 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATGYLLVKMLKDAAEKNILY 593 >gi|330984026|gb|EGH82129.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. lachrymans str. M301315] Length = 234 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 12/174 (6%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGIT-D 67 +FD ETTGLD K D+++E VEL+D KT R ++ P +++ P EA ++H ++ D Sbjct: 1 MFDTETTGLDPKTGDKMVEAAFVELIDRKKTGRFLHLYFDP--KRDVPDEAREVHNLSRD 58 Query: 68 EF--LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 E L F + DF + A +AHN+KFD GF + E Q L I Sbjct: 59 ELVRLSGGRVFGHFAQQIIDFI--KGATLVAHNSKFDEGFFDMEFQHAGYGKLSDYCESI 116 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMV 176 ID+L++A K P +N L++L + Y G R HGALLD+ LL+ VY+ M V Sbjct: 117 IDSLAVASMKRPGRQNSLDALLREYVGTENYSREYHGALLDADLLAQVYLLMTV 170 >gi|325685948|gb|EGD28011.1| DNA polymerase III PolC [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 1402 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ S + L ITDE Sbjct: 384 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTINLTSITDEM 441 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + + +F DF+ N HN +FDVGF+NA L+R P ++DTL + Sbjct: 442 VQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVNAALKRCGY-PEISQPVVDTLEV 498 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP SR+ L+SLC++Y + + H + Sbjct: 499 SRLLHPEQSRHTLDSLCRKYNVALEHHHR 527 >gi|313124033|ref|YP_004034292.1| DNA polymerase iii, alpha subunit (gram-positive type) (polc) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280596|gb|ADQ61315.1| DNA polymerase III, alpha subunit (Gram-positive type) (PolC) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 1445 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ S + L ITDE Sbjct: 427 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTINLTSITDEM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + + +F DF+ N HN +FDVGF+NA L+R P ++DTL + Sbjct: 485 VQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVNAALKRCGY-PEISQPVVDTLEV 541 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP SR+ L+SLC++Y + + H + Sbjct: 542 SRLLHPEQSRHTLDSLCRKYNVALEHHHR 570 >gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d] gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d] Length = 762 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + L ITDE Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLL-SDTTINLTSITDEM 465 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + ++DTL + Sbjct: 466 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522 Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +R HP +R+ L+SL K+Y + + HR+ A +L+ + + N G Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582 Query: 187 TNEDRFFKEEKKTVPN 202 + +F + K+ PN Sbjct: 583 NDYAKFGQVYKRAKPN 598 >gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c] gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c] Length = 758 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + L ITDE Sbjct: 404 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPHHLL-SDTTINLTSITDEM 461 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + ++DTL + Sbjct: 462 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 518 Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +R HP +R+ L+SL K+Y + + HR+ A +L+ + + N G Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 578 Query: 187 TNEDRFFKEEKKTVPN 202 + +F + K+ PN Sbjct: 579 NDYAKFGQVYKRAKPN 594 >gi|221632241|ref|YP_002521462.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM 5159] gi|221156344|gb|ACM05471.1| DNA polymerase III, epsilon subunit [Thermomicrobium roseum DSM 5159] Length = 693 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 10/192 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL RIIEIGAV D R F V + P+ R+ ++L GI DE Sbjct: 87 VALDVETTGLRPARHRIIEIGAVRYEDGCCVER-FSVLVNPH-RRLPVYIVRLTGIRDED 144 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L PSF + + F F E I +N FD+ F+NAEL+RI + PL P+ +D L + Sbjct: 145 LLTAPSFVDVAAAFRVFLGESTV--IGYNVGFDLDFLNAELRRIGQGPL-PNPALDVLPL 201 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 AR + R DL+++C+ G ++ ++H AL D+ + +Y+ ++ Q+ G+++ Sbjct: 202 ARALLTANGRYDLDAICRSIG--LARGTRHRALPDAEATAVLYLHLVERAEQV--GYRSP 257 Query: 189 EDRFFKEEKKTV 200 D ++T+ Sbjct: 258 SDLQPAATRRTI 269 >gi|332976806|gb|EGK13634.1| DNA polymerase III PolC [Desmospora sp. 8437] Length = 1099 Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 104/180 (57%), Gaps = 12/180 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + +D IIE+ AV++ D +R F+ F+ P+ RK + +L GITDE Sbjct: 417 VVFDVETTGLSAVHDEIIELAAVKVKDGEIIDR-FESFINPH-RKLTATITELTGITDEM 474 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P S + + +F + +AHNA+FD+GF+ A ++ P+D ++DTL + Sbjct: 475 VVDAPELSEVLPRYLEFI--EGTVLVAHNARFDMGFLQAACKKTGCQPVD-HPVLDTLEL 531 Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGA----LLDSHLLSDVYIKMMVGGSQIN 182 R +P +N LN+LCK++ I ++ HR+ + A L +L D + +V Q+N Sbjct: 532 GRFLYPRLKNHRLNTLCKQFDIELTQHHRAIYDAEATGFLLWRMLQDCIERKIVRLDQLN 591 >gi|300812566|ref|ZP_07092983.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496439|gb|EFK31544.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 1402 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ S + L ITDE Sbjct: 384 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTINLTSITDEM 441 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + + EF DF+ N HN +FDVGF++A L+R P ++DTL + Sbjct: 442 VQAADDEAVVIKEFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQPVVDTLEV 498 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP SR+ L+SLC++Y + + H + Sbjct: 499 SRLLHPEQSRHTLDSLCRKYNVALEHHHR 527 >gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 01V1-a] gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 01V1-a] Length = 946 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + L ITDE Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 465 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + ++DTL + Sbjct: 466 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522 Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +R HP +R+ L+SL K+Y + + HR+ A +L+ + + N G Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582 Query: 187 TNEDRFFKEEKKTVPN 202 + +F + K+ PN Sbjct: 583 NDYAKFGQVYKRAKPN 598 >gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195] gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195] Length = 1424 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + L ITDE Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 465 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + ++DTL + Sbjct: 466 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522 Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +R HP +R+ L+SL K+Y + + HR+ A +L+ + + N G Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582 Query: 187 TNEDRFFKEEKKTVPN 202 + +F + K+ PN Sbjct: 583 NDYAKFGQVYKRAKPN 598 >gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590] gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590] Length = 1438 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 101/167 (60%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ +K S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDQIIELAAVKVYDGEIIDK-FERFSNPH-QKLSETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +RI P + +IDTL + Sbjct: 481 LTDAPEIDEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERIGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKML 582 >gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 3008A-a] gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2062A-h1] gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2062A-h1] gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 3008A-a] Length = 1420 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + L ITDE Sbjct: 404 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 461 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + ++DTL + Sbjct: 462 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 518 Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +R HP +R+ L+SL K+Y + + HR+ A +L+ + + N G Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 578 Query: 187 TNEDRFFKEEKKTVPN 202 + +F + K+ PN Sbjct: 579 NDYAKFGQVYKRAKPN 594 >gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 1401G] gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 1401G] Length = 1424 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + L ITDE Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 465 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + ++DTL + Sbjct: 466 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522 Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +R HP +R+ L+SL K+Y + + HR+ A +L+ + + N G Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582 Query: 187 TNEDRFFKEEKKTVPN 202 + +F + K+ PN Sbjct: 583 NDYAKFGQVYKRAKPN 598 >gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 60-B] gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 60-B] Length = 1424 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + L ITDE Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 465 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + ++DTL + Sbjct: 466 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522 Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +R HP +R+ L+SL K+Y + + HR+ A +L+ + + N G Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582 Query: 187 TNEDRFFKEEKKTVPN 202 + +F + K+ PN Sbjct: 583 NDYAKFGQVYKRAKPN 598 >gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2052A-d] gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2052A-d] Length = 1420 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + L ITDE Sbjct: 404 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 461 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + ++DTL + Sbjct: 462 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 518 Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +R HP +R+ L+SL K+Y + + HR+ A +L+ + + N G Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 578 Query: 187 TNEDRFFKEEKKTVPN 202 + +F + K+ PN Sbjct: 579 NDYAKFGQVYKRAKPN 594 >gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 2503V10-D] gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 2503V10-D] Length = 1424 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + L ITDE Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 465 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + ++DTL + Sbjct: 466 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522 Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +R HP +R+ L+SL K+Y + + HR+ A +L+ + + N G Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582 Query: 187 TNEDRFFKEEKKTVPN 202 + +F + K+ PN Sbjct: 583 NDYAKFGQVYKRAKPN 598 >gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335] gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners AB-1] gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335] Length = 1420 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + L ITDE Sbjct: 404 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 461 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + ++DTL + Sbjct: 462 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 518 Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +R HP +R+ L+SL K+Y + + HR+ A +L+ + + N G Sbjct: 519 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 578 Query: 187 TNEDRFFKEEKKTVPN 202 + +F + K+ PN Sbjct: 579 NDYAKFGQVYKRAKPN 594 >gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2053A-b] gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2053A-b] Length = 1424 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + L ITDE Sbjct: 408 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 465 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + ++DTL + Sbjct: 466 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 522 Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +R HP +R+ L+SL K+Y + + HR+ A +L+ + + N G Sbjct: 523 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 582 Query: 187 TNEDRFFKEEKKTVPN 202 + +F + K+ PN Sbjct: 583 NDYAKFGQVYKRAKPN 598 >gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271] gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271] Length = 1435 Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 94/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL S DRIIE+ AV++ + + TF+ F+ P G S +L GITD Sbjct: 421 VVFDVETTGLSSVYDRIIELAAVKMRN-GEVIDTFEAFINP-GYHLSAMITELTGITDAM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + + + F +F ++ +AHNA FD+GF+N R+ P+ +IDTL + Sbjct: 479 LADAPPEAEVMARFAEF--SKDTILVAHNASFDMGFLNKTYARLGM-PVPDQPVIDTLEL 535 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R +P R+ LN L K YG+T+ H A+ DS V K++ Sbjct: 536 SRLVNPDMRSHRLNVLAKHYGVTLEQH--HRAVYDSETTGYVCYKLL 580 >gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM 2522] gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM 2522] Length = 1434 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 97/162 (59%), Gaps = 10/162 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL + + IIE+ AV++ + +R F+ F P+ K +P + L GITD+ Sbjct: 421 IVFDVETTGLSAVYNTIIELAAVKVKNGEIVDR-FESFANPH-EKLTPLIIDLTGITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 +++ P + +F ++ +A +AHNA FD+GFINA Q+I +P +IDTL Sbjct: 479 VENAPEVDDVLKDFHEWIG--DATLVAHNASFDMGFINAGFQKIGYGHATNP--VIDTLE 534 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 + R +P+ +N LN+LCK++ I + HR+ + A HLL Sbjct: 535 LGRLLYPTFKNYRLNTLCKKFNIELVAHHRAIYDAEATGHLL 576 >gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 143-D] gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 143-D] Length = 1416 Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 8/196 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + L ITDE Sbjct: 400 VIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTINLTSITDEM 457 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + ++DTL + Sbjct: 458 VQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQPVVDTLEV 514 Query: 130 ARRKHP-SSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +R HP +R+ L+SL K+Y + + HR+ A +L+ + + N G Sbjct: 515 SRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFYERFQEANLGKM 574 Query: 187 TNEDRFFKEEKKTVPN 202 + +F + K+ PN Sbjct: 575 NDYAKFGQVYKRAKPN 590 >gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360] gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20] gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360] gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20] gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 1313] Length = 1442 Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 97/168 (57%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 +VFDIETTGL + D+I EIGAV++ + K TF F+ P PE +KL GITD+ Sbjct: 430 VVFDIETTGLSADKDKITEIGAVKIKE-GKIVDTFSTFVNP--EIPIPEFVVKLTGITDD 486 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + EF +F + +AHNA FD GFI + IN++ +P +IDTL Sbjct: 487 MVSDAPTIDKVLPEFLEFVG--TSPLVAHNAVFDTGFIRHNARLINRNVDNP--VIDTLE 542 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R+ P ++ L+ + K G+++ + H AL D+ +++IK + Sbjct: 543 LSRQMFPELKKHKLDVVAKHLGVSLENH--HRALDDAKACGEIFIKCL 588 >gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405] gi|125713736|gb|ABN52228.1| DNA polymerase III catalytic subunit, PolC type [Clostridium thermocellum ATCC 27405] Length = 1442 Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 97/168 (57%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 +VFDIETTGL + D+I EIGAV++ + K TF F+ P PE +KL GITD+ Sbjct: 430 VVFDIETTGLSADKDKITEIGAVKIKE-GKIVDTFSTFVNP--EIPIPEFVVKLTGITDD 486 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + EF +F + +AHNA FD GFI + IN++ +P +IDTL Sbjct: 487 MVSDAPTIDKVLPEFLEFVG--TSPLVAHNAVFDTGFIRHNARLINRNVDNP--VIDTLE 542 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R+ P ++ L+ + K G+++ + H AL D+ +++IK + Sbjct: 543 LSRQMFPELKKHKLDVVAKHLGVSLENH--HRALDDAKACGEIFIKCL 588 >gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1] gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1] Length = 1436 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 97/167 (58%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + IIE+ AV++ D +R F F P+ S ++L GITD+ Sbjct: 422 VVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FTSFANPH-HPLSMTTIELTGITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LKD P + +F+D+ ++ +AHNA FD+GF+N +I + + +IDTL + Sbjct: 480 LKDAPDVEEVLRQFYDWIG--DSVLVAHNASFDIGFLNVGFAKIGLGKVT-NPVIDTLEL 536 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR +P +N LN+LCK++ I ++ H A+ D+ + ++M+ Sbjct: 537 ARFLYPDLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLLMRML 581 >gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16] gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16] Length = 1434 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 10/162 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + IIE+ AV++ D +R F F P+ S ++L GITDE Sbjct: 420 VVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANPH-HPLSVTTMELTGITDEM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 +KD P + F D+ ++ AHNA FD+GF+NA L ++ ++P +IDTL Sbjct: 478 VKDAPDVEEVLRRFIDWVG--DSTLAAHNASFDIGFLNAGLAKMGLGKVINP--VIDTLE 533 Query: 129 IARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167 +AR +P +N LN+LCK++ I ++ HR+ + A HLL Sbjct: 534 LARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLL 575 >gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2] gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans NG80-2] Length = 1442 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 10/162 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + IIE+ AV++ D +R F F P+ S ++L GITDE Sbjct: 428 VVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANPH-HPLSVTTMELTGITDEM 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 +KD P + F D+ ++ AHNA FD+GF+NA L ++ ++P +IDTL Sbjct: 486 VKDAPDVEEVLRRFIDWVG--DSTLAAHNASFDIGFLNAGLAKMGLGKVINP--VIDTLE 541 Query: 129 IARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167 +AR +P +N LN+LCK++ I ++ HR+ + A HLL Sbjct: 542 LARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLL 583 >gi|116093619|gb|ABJ58772.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1411 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ S + L ITDE Sbjct: 393 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTINLTSITDEM 450 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + + +F DF+ N HN +FDVGF++A L+R P ++DTL + Sbjct: 451 VQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQPVVDTLEV 507 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP SR+ L+SLC++Y + + H + Sbjct: 508 SRLLHPEQSRHTLDSLCRKYNVALEHHHR 536 >gi|315111548|ref|YP_813210.2| DNA polymerase III, alpha subunit ( type) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1445 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ S + L ITDE Sbjct: 427 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTINLTSITDEM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + + +F DF+ N HN +FDVGF++A L+R P ++DTL + Sbjct: 485 VQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQPVVDTLEV 541 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP SR+ L+SLC++Y + + H + Sbjct: 542 SRLLHPEQSRHTLDSLCRKYNVALEHHHR 570 >gi|325126001|gb|ADY85331.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 1445 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ S + L ITDE Sbjct: 427 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTINLTSITDEM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + + +F DF+ N HN +FDVGF++A L+R P ++DTL + Sbjct: 485 VQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQPVVDTLEV 541 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP SR+ L+SLC++Y + + H + Sbjct: 542 SRLLHPEQSRHTLDSLCRKYNVPLEHHHR 570 >gi|104774216|ref|YP_619196.1| DNA polymerase III, alpha subunit ( type) (PolC) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423297|emb|CAI98138.1| DNA polymerase III, alpha subunit (gram-positive type) (PolC) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 1411 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ S + L ITDE Sbjct: 393 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTINLTSITDEM 450 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + + +F DF+ N HN +FDVGF++A L+R P ++DTL + Sbjct: 451 VQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQPVVDTLEV 507 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP SR+ L+SLC++Y + + H + Sbjct: 508 SRLLHPEQSRHTLDSLCRKYNVPLEHHHR 536 >gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis SK119] gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis SK119] Length = 1438 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F PN K S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPN-EKLSETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] Length = 1440 Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTGL+++ D +IEI AV+ + + T+ + P R P+ ++L GIT+E Sbjct: 428 VVFDTETTGLNAREDTLIEIAAVK-VKAGQIVDTYATLIDPE-RALDPKIVELTGITNEM 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + +P F F + A +AHNA+FDVGF+N +R+ DP + +IDTL++ Sbjct: 486 VAGQPKLKEALDGFRQF--ARGAVLVAHNAEFDVGFLNQCAERLGLDPWEEP-VIDTLAL 542 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR +P +N L +L +++ + + + H AL DS + V++ M+ Sbjct: 543 ARVLYPGEKNYKLKTLTQKFSVDLVNH--HRALADSEATAKVFVHML 587 >gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1440 Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTGL+++ D +IEI AV+ + + T+ + P R P+ ++L GIT+E Sbjct: 428 VVFDTETTGLNAREDTLIEIAAVK-VKAGQIVDTYATLIDPE-RSLDPKIVELTGITNEM 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + +P F F + A +AHNA+FDVGF+N +R+ DP + +IDTL++ Sbjct: 486 VAGQPKLREALDGFRQF--ARGAVLVAHNAEFDVGFLNQCAERLGLDPWEQP-VIDTLAL 542 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR +P +N L +L +++ + + + H AL DS + V++ M+ Sbjct: 543 ARVLYPGEKNYKLKTLTQKFSVDLVNH--HRALADSEATAKVFVHML 587 >gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70] gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70] Length = 1435 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 8/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + IIE+ AV++ D +R F F P+ S ++L GITD+ Sbjct: 421 VVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FTSFANPH-HPLSITTIELTGITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LKD P + +F+D+ ++ +AHNA FD+GF+N ++ + + +IDTL + Sbjct: 479 LKDAPDVEEVLRQFYDWMG--DSILVAHNASFDIGFLNVGFTKLGLGKVT-NPVIDTLEL 535 Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167 AR +P +N LN+LCK++ I ++ HR+ + A +LL Sbjct: 536 ARFLYPELKNHRLNTLCKKFDIELTQHHRAIYDAEATGYLL 576 >gi|194015013|ref|ZP_03053630.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus pumilus ATCC 7061] gi|194014039|gb|EDW23604.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus pumilus ATCC 7061] Length = 1437 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 7/177 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ +R F+ F P+ S ++L GITD+ Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKIKGGEIIDR-FEAFANPH-HPLSATTIELTGITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P + +F ++ + +AHNA FD+GF+N +R+ K + +IDTL + Sbjct: 480 VKDAPDVVDVVRDFKEWIGQDI--LVAHNASFDMGFLNTAYKRLLKTDKASNPVIDTLEL 537 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 R +P +N LN+LCK++ I ++ H A+ D+ + +KM+ ++ + + Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLMLKMLKDAAEKDIAY 592 >gi|42527504|ref|NP_972602.1| DNA polymerase III domain-containing protein [Treponema denticola ATCC 35405] gi|41818089|gb|AAS12513.1| DNA polymerase III domain protein [Treponema denticola ATCC 35405] gi|325473756|gb|EGC76945.1| DNA polymerase III domain-containing protein [Treponema denticola F0402] Length = 217 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 8/153 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG ++K +R++EIG V+ D + V + P + PEA K++ ITDE L Sbjct: 18 AFDTETTGTEAKAERVVEIGCVKF-DIRGVIARYNVLIDPE-KPMPPEAGKVNQITDEML 75 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +P F+ + +F DF +N +AHNA FD+ FIN EL+R K L +++ DTL+ A Sbjct: 76 AGQPKFAEVLPDFLDFI--RNTVLVAHNASFDINFINCELERCGKTKL-TNKVFDTLTFA 132 Query: 131 RRKHPSSRN-DLNSLCKRYGITI--SHRSKHGA 160 R P ++ L +L ++G+ +HR++ A Sbjct: 133 RETLPGLQSYALQNLATQFGVQAVNAHRAEDDA 165 >gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1] gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1] Length = 1442 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ R S + L ITD+ Sbjct: 427 VVFDVETTGLSNQYDKIIELAAVKVHDGEIIDK-FERFSNPHERL-SETIINLTHITDDM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 485 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 541 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 586 >gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125] gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125] Length = 1433 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 97/165 (58%), Gaps = 16/165 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + ++IIE+ AV++ + +R F+ F P+ + ++L GITD+ Sbjct: 420 VVFDVETTGLSAVYNKIIELAAVKVKNGEIIDR-FERFADPH-EPLTNTIIELTGITDDM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 LK +P + +EF F +A +AHNA FD+GF+N Q++ K+P +ID Sbjct: 478 LKGQPEVEQVLNEFHAFIG--DAVLVAHNASFDMGFLNTGFQKMGLGEAKNP-----VID 530 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITI--SHRSKHGALLDSHLL 167 TL + R +P+ +N LN+LCK++ I + HR+ + A HLL Sbjct: 531 TLELGRFLYPTLKNHRLNTLCKKFDIELVSHHRAIYDAEATGHLL 575 >gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15] gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15] Length = 1431 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 101/180 (56%), Gaps = 9/180 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + ++IIE+ AV++ D ++ F+ F P S + L GITDE Sbjct: 415 VVFDVETTGLSAMYNKIIELAAVKIYDGDVIDK-FEAFADPK-HLLSATTIDLTGITDEM 472 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ KP + EF D+ + +AHNA FD+GF+NA L+ N + +IDTL + Sbjct: 473 VRGKPDPEQVVKEFMDWAG--GSILVAHNASFDIGFLNATLRSGNHEE-STLPVIDTLEL 529 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 AR PS +N LN+L KR+ I ++ H A+ D+ + +K++ ++ F KT+ Sbjct: 530 ARVLMPSLKNHRLNTLAKRFDIELTQH--HRAIYDAEATGYLMLKLLQMADEM-FNMKTH 586 >gi|167470221|ref|ZP_02334925.1| DNA polymerase III, epsilon subunit [Yersinia pestis FV-1] Length = 143 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 70/114 (61%), Gaps = 8/114 (7%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+I+ D ETTG++ + RIIEIG V +++ T R F V++ P R PEA + Sbjct: 7 RQILLDTETTGMNKLGVHYEGHRIIEIGTVAVINLPLTGRNFHVYVKP-ARLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 HGI+DEFL DKP+F+ I EF DF + E + HNA FD+GF + E + + +D Sbjct: 66 HGISDEFLADKPTFADITPEFLDFI--RGGELVIHNAAFDIGFKDYEFRMLQQD 117 >gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795] gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795] Length = 1432 Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 101/167 (60%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG +KND+I EIGAV++ ++ +R F + P + S + +L GIT++ Sbjct: 419 VVFDLETTGFSNKNDKITEIGAVKVKNFEIVDR-FNELINPE-KDISYKVQELTGITNDL 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KDKP+ I +F +F ++ +AHNA+FD+GFIN + + +N + + S +DTL + Sbjct: 477 IKDKPTIEEILPKFMEFVG--DSVLVAHNAEFDIGFINQKCKEMNIEFKNKS--VDTLML 532 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P R LN+L K G+ + + H A+ D+ + ++IK + Sbjct: 533 ARILLPHLKRFKLNNLTKELGVPLHNH--HRAVDDAAATAQIFIKFL 577 >gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17] gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17] Length = 1433 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GF+N ++ D P +P +IDTL Sbjct: 477 LTDAPEVGEVFKKFESWMGDHT--LVAHNASFDMGFLNVGFKKCGLDKPKNP--VIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442] gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442] Length = 1433 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GF+N ++ D P +P +IDTL Sbjct: 477 LTDAPEVGEVFKKFESWMGDHT--LVAHNASFDMGFLNVGFKKCGLDKPKNP--VIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4] gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4] Length = 1433 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GF+N ++ D P +P +IDTL Sbjct: 477 LTDAPEVGEVFKKFESWMGDHT--LVAHNASFDMGFLNVGFKKCGLDKPKNP--VIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13] Length = 1437 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ +R F+ F P+ S + L GITD+ Sbjct: 423 VVFDVETTGLSAMYDTIIELAAVKVKGGEIIDR-FESFANPH-HPLSATTINLTGITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 +++ P + +F ++ Q+ +AHNA FD+GF+N QRI K+P +ID Sbjct: 481 VQNAPEVGDVLKQFSEWM--QDDILVAHNASFDMGFLNIGFQRIGLGKAKNP-----VID 533 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL + R PS +N LN+LCK++ I ++ H A+ D+ + +KM+ Sbjct: 534 TLELGRLLFPSLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLLVKML 582 >gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7] gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM 7] gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208] gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3] Length = 1437 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ S ++L GITD+ Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FEAFANPH-HPLSATTIELTGITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D P + +F ++ + +AHNA FD+GF+N +R+ K + +IDTL + Sbjct: 480 VRDAPDVVDVVRDFKEWIGDDV--LVAHNASFDMGFLNVAYKRLLKTEKAKNPVIDTLEL 537 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR +P +N LN+LCK++ I ++ H A+ D+ + +KM+ Sbjct: 538 ARFLYPEFKNHRLNTLCKKFDIELTQH--HRAVFDAEATGYLLLKML 582 >gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44] gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44] Length = 1433 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GF+N ++ D P +P +IDTL Sbjct: 477 LTDAPEVGEVFKKFEAWMGDHT--LVAHNASFDMGFLNVGFKKCGLDKPKNP--VIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42] gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42] Length = 1437 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ S ++L GITD+ Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FEAFANPH-HPLSATTIELTGITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D P + +F ++ + +AHNA FD+GF+N +R+ K + +IDTL + Sbjct: 480 VRDAPDVVDVVRDFKEWIGDDV--LVAHNASFDMGFLNVAYKRLLKTEKAKNPVIDTLEL 537 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR +P +N LN+LCK++ I ++ H A+ D+ + +KM+ Sbjct: 538 ARFLYPEFKNHRLNTLCKKFDIELTQH--HRAVFDAEATGYLLLKML 582 >gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 1410 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 101/165 (61%), Gaps = 9/165 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL S ND IIEIGAV++ ++ + TF+ F+ P S KL GITD+ Sbjct: 400 VVFDIETTGLSSINDNIIEIGAVKIKNFQIVD-TFETFVNPQVHI-SKFITKLTGITDDM 457 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ PS I +F DF +++ +AHNA FDV FI + + + + +P ++DTL + Sbjct: 458 VKEYPSIEEILPKFLDFI--KDSILVAHNANFDVTFIKTKARNLGMEVDNP--VLDTLEL 513 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +R + + +N L+++ + G+++ + H A+ D+ ++++IK Sbjct: 514 SRHMYENLKNYKLDTVAQHLGVSLENH--HRAVDDAKATAEIFIK 556 >gi|110004377|emb|CAK98715.1| probable dna polymerase III alpha subunit protein [Spiroplasma citri] Length = 1453 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 8/180 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++FD+ETTGL S D IIE GAV ++D R L K S +L GITD Sbjct: 409 KYVIFDLETTGLSSGYDEIIEFGAV-IMDGISGERQIINHLFKPSVKLSSFTTELTGITD 467 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L DKP+F + ++F ++A IAHNA+FD+GFI + L++ + ++ + +IDTL Sbjct: 468 ELLADKPTFIESIDQILEYF--KDAILIAHNAEFDLGFIQSWLKKAGRSEIN-NTVIDTL 524 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKMMVGGSQINF 183 ++R P +N L ++ + Y + + H D+ +L+D+Y ++ M+ I F Sbjct: 525 QLSRILEPHLKNYRLGTIARCYSVIYNEEVAHRGDYDAIVLTDIYEHQLRKMINNYGIEF 584 >gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4] Length = 1436 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 96/170 (56%), Gaps = 14/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL + D IIE+ AV++ D +R F+ F P+ S + L GITD+ Sbjct: 422 IVFDVETTGLSANYDTIIELAAVKVFDGEIIDR-FERFANPH-HPLSATTINLTGITDDM 479 Query: 70 LKDKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDT 126 +KD P S + ++F W ++ +AHNA FD+GF+N QR K +P +IDT Sbjct: 480 VKDAPEVSEVVTDFKKW----AEDGILVAHNASFDMGFLNISYQRAGLKKASNP--VIDT 533 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L +AR +PS +N LN+L K+ + ++ H A+ D+ + K++ Sbjct: 534 LELARFLYPSMKNHRLNTLAKKLDVELTQH--HRAIYDAEATGYILAKLL 581 >gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435] gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus haemolyticus JCSC1435] Length = 1438 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ K S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPH-EKLSETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTESTAYIFIKMV 582 >gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis subsp. hominis C80] gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis subsp. hominis C80] Length = 1438 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ K S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPH-EKLSETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2] gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2] Length = 1437 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 96/168 (57%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFDIETTGL N++IIE+ V++ + + +R F F+ P+ K +L I DE Sbjct: 422 IVFDIETTGLSIINNKIIELAGVKMREGKEVDR-FSTFINPH-EKIPYHIQQLTNINDEM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 +KD P EF DF ++ +AHNA+FD+GFI A L+ I D +P ++DTL Sbjct: 480 VKDAPELEPKLREFIDFIG--DSILVAHNARFDIGFIQANLKSIGMPDVTNP--VLDTLE 535 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR HP+ +N LN+L +Y +++ + H A+ DS L V ++ Sbjct: 536 LARFLHPTMKNHRLNTLSAKYKVSLDNH--HRAVDDSVALGGVLFGLI 581 >gi|157692337|ref|YP_001486799.1| DNA polymerase III PolC [Bacillus pumilus SAFR-032] gi|157681095|gb|ABV62239.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus SAFR-032] Length = 1437 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 99/177 (55%), Gaps = 7/177 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ +R F+ F P+ S ++L GITD+ Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKIKGGEIIDR-FEAFANPH-HPLSATTIELTGITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D P + +F ++ + +AHNA FD+GF+N +R+ K + +IDTL + Sbjct: 480 VRDAPDVVDVVRDFKEWIGQDI--LVAHNASFDMGFLNTAYKRLLKTDKASNPVIDTLEL 537 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 R +P +N LN+LCK++ I ++ H A+ D+ + +KM+ ++ + + Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLMLKMLKDAAEKDIAY 592 >gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681] gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681] Length = 1438 Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 10/174 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTGL ++IIEI AV++ D + +R + F+ P+ R P + +L I DE Sbjct: 422 VVFDIETTGLSVTQNKIIEIAAVKMHDGKEVDR-YATFVNPHER--IPYNIQQLTNINDE 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + EF F +A +AHNA+FDVGFI A L+ + P + ++DTL Sbjct: 479 MVKDAPDVEPVMKEFVAFAG--DAVLVAHNARFDVGFIQATLRNMGL-PEMTNPVLDTLE 535 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +AR P+ +N LN+L +Y + + S H A+ D+ L++V ++ QI Sbjct: 536 LARLLFPTMKNHRLNTLTTKYKVAL--ESHHRAIDDTVALTEVLNGLLNDAEQI 587 >gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus harei ACS-146-V-Sch2b] Length = 1012 Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 100/168 (59%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 +VFDIETTGL S+ND+I EIGAV++ + +R Q+ N K P+ + L GI++ Sbjct: 1 MVFDIETTGLSSRNDKITEIGAVKIKNGMIVDRFSQLI---NPEKEIPQVVVDLTGISNA 57 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++P+ + +F+DF ++A +AHNAKFD+ FI E N + + I+DTL Sbjct: 58 MVENEPTIEEVILKFYDF--AKDAVLVAHNAKFDISFIRREYA--NNNLVFNHPILDTLV 113 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR R +L +LCK G+++ H A+ D+ ++V+IK++ Sbjct: 114 LARATMSDMKRFNLGTLCKNLGVSLV--GAHRAVNDAEATAEVFIKLI 159 >gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus pseudintermedius ED99] Length = 1435 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 102/169 (60%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ + E +K L ITD+ Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVKNGEIIDK-FERFSNPHEKLT--ETIKNLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P + +EF + +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 478 MLKDAPEIEEVLTEFKAWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-SANAVIDTLE 534 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++R + S ++ LN L K+YG+ ++ H A+ D+ + +++KM+ Sbjct: 535 LSRTINTSYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFVKMLA 581 >gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98] Length = 1433 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GF+N ++ D P +P +IDTL Sbjct: 477 LTDAPEVGEVFKKFQAWMGDHT--LVAHNASFDMGFLNVGFKKCGLDKPKNP--VIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P +N LN+LCK+ I ++ H A+ D+ + KM+ Sbjct: 533 LARFLFPDMKNHRLNTLCKKLDIELTQH--HRAIYDTEATGYLLAKML 578 >gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603] gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603] Length = 1433 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 96/171 (56%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN +++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKVGIEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|312978245|ref|ZP_07789989.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus crispatus CTV-05] gi|310894963|gb|EFQ44033.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus crispatus CTV-05] Length = 836 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 8/150 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + L ITDE Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + + + +F DF+ ++ HN +FDVGF+NA L+R K+ P ++DTL Sbjct: 478 VGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEITQP--VVDTLE 533 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157 ++R HP SR+ L+SL K+Y +++ H + Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHHHR 563 >gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 1443 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 15/170 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-----KLHGI 65 VFD+ETTGL S+ D IIE G +++ ++ Q+F+ P P AL +L I Sbjct: 398 VFDLETTGLSSRFDHIIEFGG-QIMKDRTCIKSLQLFVKP------PIALSAFTTELTNI 450 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++E +K+ F+ E +F ++ +AHNA FD GF+NAEL+RI + PL + +ID Sbjct: 451 SEENMKNAKPFAECVDEILEFIG--DSILVAHNASFDYGFLNAELERIGRKPL-MNPVID 507 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR L +L ++YGI H A D+ +L+ V++ M+ Sbjct: 508 TLDLARSMMDRKGYRLGNLARQYGIRYDEDVAHRADYDAEVLAQVFMHML 557 >gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus thuringiensis serovar finitimus YBT-020] Length = 970 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108] gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102] gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1] gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108] gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102] gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1] Length = 970 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius HKU10-03] Length = 1435 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 102/169 (60%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ + E +K L ITD+ Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVKNGEIIDK-FERFSNPHEKLT--ETIKNLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P + +EF + +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 478 MLKDAPEIEEVLTEFKAWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNAVIDTLE 534 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++R + S ++ LN L K+YG+ ++ H A+ D+ + +++KM+ Sbjct: 535 LSRTINTSYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFVKMLA 581 >gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270] gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270] Length = 1431 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 96/167 (57%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL + I EIGAV + + K F + P ++ S E ++ GIT+E Sbjct: 418 VVFDIETTGLSHLKNNITEIGAVRV-ESGKIVDVFNGLVNPE-QEISQEITEITGITNEM 475 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + DKP S I +F +F +NA ++AHNA+FD+ FI +R+N + +P+ IDT+ Sbjct: 476 VADKPLISEIMPKFLEF--SKNAVFVAHNAEFDISFIKTNCKRLNLE-FNPT-FIDTMGF 531 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN+LCK G+ + + H A D+ + + ++++ Sbjct: 532 ARAILPHLKNHKLNTLCKELGVNLLNH--HRASFDAEACAGILLELI 576 >gi|256849838|ref|ZP_05555269.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|256713327|gb|EEU28317.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] Length = 1436 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 8/150 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + L ITDE Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + + + +F DF+ ++ HN +FDVGF+NA L+R K+ P ++DTL Sbjct: 478 VGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEITQP--VVDTLE 533 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157 ++R HP SR+ L+SL K+Y +++ H + Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHHHR 563 >gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus capitis SK14] gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus capitis SK14] Length = 1438 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMI 582 >gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus caprae C87] gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus caprae C87] Length = 1442 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 427 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 485 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 541 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMI 586 >gi|227878821|ref|ZP_03996728.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|227861569|gb|EEJ69181.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] Length = 1436 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 8/150 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + L ITDE Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + + + +F DF+ ++ HN +FDVGF+NA L+R K+ P ++DTL Sbjct: 478 VGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEITQP--VVDTLE 533 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157 ++R HP SR+ L+SL K+Y +++ H + Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHHHR 563 >gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU144] Length = 1438 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|256843343|ref|ZP_05548831.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|293381212|ref|ZP_06627220.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus crispatus 214-1] gi|256614763|gb|EEU19964.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|290922252|gb|EFD99246.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus crispatus 214-1] Length = 1436 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 8/150 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + L ITDE Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + + + +F DF+ ++ HN +FDVGF+NA L+R K+ P ++DTL Sbjct: 478 VGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEITQP--VVDTLE 533 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157 ++R HP SR+ L+SL K+Y +++ H + Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHHHR 563 >gi|295693139|ref|YP_003601749.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1] gi|295031245|emb|CBL50724.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1] Length = 1436 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 8/150 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + L ITDE Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + + + +F DF+ ++ HN +FDVGF+NA L+R K+ P ++DTL Sbjct: 478 VGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEITQP--VVDTLE 533 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157 ++R HP SR+ L+SL K+Y +++ H + Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHHHR 563 >gi|262046916|ref|ZP_06019876.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] gi|260572898|gb|EEX29458.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] Length = 1436 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 8/150 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + L ITDE Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + + + +F DF+ ++ HN +FDVGF+NA L+R K+ P ++DTL Sbjct: 478 VGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEITQP--VVDTLE 533 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157 ++R HP SR+ L+SL K+Y +++ H + Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHHHR 563 >gi|154502558|ref|ZP_02039618.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149] gi|153796750|gb|EDN79170.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149] Length = 1503 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 95/169 (56%), Gaps = 13/169 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFDIETTG + D+IIEIGAV++ D + + F F+ P R E +L ITDE Sbjct: 468 IVFDIETTGFSAIKDKIIEIGAVKVKDGAIVEK-FSTFVNPK-RPIPFEITQLTSITDEM 525 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127 + D P S+ EF +F + +AHNA FDVGFI N Q I D + +DT+ Sbjct: 526 VLDAPDIESVLPEFLEFVG--DGVLVAHNAGFDVGFIEQNCRYQEIEPDFVS----VDTV 579 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++AR P+ S+ LN + K GI++ + H A+ D+ +++++K + Sbjct: 580 ALARVLLPTLSKYKLNIVAKALGISLENH--HRAVDDAGATAEIFVKFV 626 >gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060] gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060] Length = 1442 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 427 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 485 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 541 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 586 >gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144] gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144] Length = 1442 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 427 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 485 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 541 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 586 >gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU028] gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU045] Length = 1438 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis FRI909] Length = 1438 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1] gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1] Length = 1443 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 98/168 (58%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ D ++ ++ F P+ S ++L GITD+ Sbjct: 429 VVFDVETTGLSTAYDTIIELAAVKIKDGQVIDK-YESFANPH-HPLSATTIELTGITDDM 486 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 +++ P + EF F +A +AHNA FD+GF+ ++ +D + P +IDTL Sbjct: 487 VRNAPEVEQVIKEFHAFIG--DAIVVAHNASFDIGFLYTGYKKFGLEDTVHP--VIDTLE 542 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR +P+ +N LN+LCK++ I ++ H A+ D+ + ++++ Sbjct: 543 LARLLYPTMKNHRLNTLCKKFNIELTQH--HRAIYDTEATGYLLLQLL 588 >gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A] gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)] gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis RP62A] gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)] Length = 1436 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 479 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580 >gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228] gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis ATCC 12228] Length = 1442 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 427 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 485 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 541 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 586 >gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis SK135] gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis SK135] Length = 1438 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1] gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1] Length = 1433 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187] gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26] gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293] gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH187] gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293] gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26] Length = 1433 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1433 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus W] gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus W] gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 1433 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames] gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor'] gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne] gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L] gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Bacillus anthracis str. A2012] gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0488] gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0465] gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0389] gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis Tsiankovskii-I] gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus NVH0597-99] gi|218904946|ref|YP_002452780.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH820] gi|227813274|ref|YP_002813283.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. CDC 684] gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201] gi|229601637|ref|YP_002868056.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0248] gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066] gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055] gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum] gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94] gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus anthracis CI] gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. Ames] gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. 'Ames Ancestor'] gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. Sterne] gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L] gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0488] gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0389] gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0465] gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis Tsiankovskii-I] gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus NVH0597-99] gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH820] gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. CDC 684] gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201] gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0248] gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis str. CI] Length = 1433 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0193] gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0174] gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North America USA6153] gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0193] gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0174] Length = 1433 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 1433 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|238854744|ref|ZP_04645074.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 269-3] gi|238832534|gb|EEQ24841.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 269-3] Length = 1405 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 8/150 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D R F F+ P+ S + L ITDE Sbjct: 389 VIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTINLTSITDEM 446 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + + + F +F+ ++ HN +FDVGF+NA L+R K+ P ++DTL Sbjct: 447 VSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEITQP--VVDTLE 502 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157 ++R HP +++ L+SLCK+Y + + H + Sbjct: 503 VSRLLHPEQTKHTLDSLCKKYNVVLEHHHR 532 >gi|313472267|ref|ZP_07812759.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 1153] gi|239529663|gb|EEQ68664.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 1153] Length = 1428 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 8/150 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D R F F+ P+ S + L ITDE Sbjct: 412 VIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTINLTSITDEM 469 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + + + F +F+ ++ HN +FDVGF+NA L+R K+ P ++DTL Sbjct: 470 VSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEITQP--VVDTLE 525 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157 ++R HP +++ L+SLCK+Y + + H + Sbjct: 526 VSRLLHPEQTKHTLDSLCKKYNVVLEHHHR 555 >gi|160915589|ref|ZP_02077800.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991] gi|158432709|gb|EDP10998.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991] Length = 1447 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 5/165 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL S+ D IIE G +++ ++ Q+F+ P ++L GI++E + Sbjct: 401 VFDLETTGLSSRFDHIIEFGG-QIVKDRTCIKSLQLFIKPP-VPIPAHIVELTGISEEHV 458 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ SF+ + DF ++ +AHNA FD F+N+EL RI + PLD + +IDTL +A Sbjct: 459 RNAKSFAECADQILDFIG--DSILVAHNADFDYNFLNSELVRIGRKPLD-NPVIDTLDLA 515 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R L + + YGI H A D+ +L++ Y+ M+ Sbjct: 516 RSMQDRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLANTYMNML 560 >gi|282932865|ref|ZP_06338262.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] gi|281302900|gb|EFA95105.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] Length = 1439 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 8/150 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D R F F+ P+ S + L ITDE Sbjct: 423 VIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTINLTSITDEM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + + + F +F+ ++ HN +FDVGF+NA L+R K+ P ++DTL Sbjct: 481 VSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEITQP--VVDTLE 536 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157 ++R HP +++ L+SLCK+Y + + H + Sbjct: 537 VSRLLHPEQTKHTLDSLCKKYNVVLEHHHR 566 >gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C427] gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C427] Length = 1438 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|260663976|ref|ZP_05864829.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii SJ-7A-US] gi|260561862|gb|EEX27831.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii SJ-7A-US] Length = 1439 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 8/150 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D R F F+ P+ S + L ITDE Sbjct: 423 VIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTINLTSITDEM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + + + F +F+ ++ HN +FDVGF+NA L+R K+ P ++DTL Sbjct: 481 VSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEITQP--VVDTLE 536 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157 ++R HP +++ L+SLCK+Y + + H + Sbjct: 537 VSRLLHPEQTKHTLDSLCKKYNVVLEHHHR 566 >gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9635] gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9635] Length = 1438 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MRSA252] gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C160] gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus Btn1260] gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus A017934/97] gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8] gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus MRSA252] gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus Btn1260] gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C160] gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus A017934/97] gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8] gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00] Length = 1438 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus ST398] Length = 1438 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus MRSA131] Length = 1436 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580 >gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus TW20] Length = 1438 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98] gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819] gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796] gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98] gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819] gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796] Length = 1436 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580 >gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 55/2053] gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 65-1322] gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus 68-397] gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus E1410] gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M876] gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WBG10049] gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M899] gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C101] gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M809] gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M1015] gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 55/2053] gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 65-1322] gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus 68-397] gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus E1410] gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M876] gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C101] gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M899] gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WBG10049] gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M1015] gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M809] gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60] Length = 1438 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50] gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315] gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9] gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1] gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3] gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781] gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus A9719] gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A9299] gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A8115] gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6300] gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6224] gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5937] gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A8117] gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A10102] gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1] gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus subsp. aureus N315] gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu50] gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus aureus subsp. aureus JH9] gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus JH1] gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu3] gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781] gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus A9719] gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A9299] gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A8115] gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6300] gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6224] gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5937] gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A10102] gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A8117] gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981] gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03] gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 21172] Length = 1438 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2] gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MSSA476] gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. Newman] gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5948] gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30] gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus 930918-3] gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9765] gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132] gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70] gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus MW2] gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus MSSA476] gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus str. Newman] gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5948] gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus 930918-3] gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30] gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9765] gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70] gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01] gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131] gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 21189] Length = 1438 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 21193] Length = 1438 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL] gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754] gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus] gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus COL] gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus NCTC 8325] gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754] Length = 1436 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580 >gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus D139] gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus H19] gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus D139] gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus H19] Length = 1438 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus JKD6159] Length = 1438 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|256851261|ref|ZP_05556650.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 27-2-CHN] gi|260660685|ref|ZP_05861600.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 115-3-CHN] gi|282934729|ref|ZP_06339972.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] gi|297206128|ref|ZP_06923523.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16] gi|256616323|gb|EEU21511.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 27-2-CHN] gi|260548407|gb|EEX24382.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 115-3-CHN] gi|281301304|gb|EFA93605.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] gi|297149254|gb|EFH29552.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16] Length = 1439 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 8/150 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ D R F F+ P+ S + L ITDE Sbjct: 423 VIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTINLTSITDEM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + + + F +F+ ++ HN +FDVGF+NA L+R K+ P ++DTL Sbjct: 481 VSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEITQP--VVDTLE 536 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157 ++R HP +++ L+SLCK+Y + + H + Sbjct: 537 VSRLLHPEQTKHTLDSLCKKYNVVLEHHHR 566 >gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus] Length = 1415 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580 >gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46] Length = 1436 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580 >gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus ED133] Length = 1436 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580 >gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] Length = 1436 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580 >gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130] gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130] Length = 1438 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus warneri L37603] gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus warneri L37603] Length = 1438 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ K S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPH-EKLSETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LTDAPEIEDVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTDYGKHGLNFLAKKYGVDLTQH--HRAIYDTEATAYIFIKMV 582 >gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11] Length = 1436 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580 >gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus MRSA177] Length = 1442 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 427 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 485 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 541 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 542 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 586 >gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus] Length = 1435 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 421 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 479 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 535 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 536 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 580 >gi|289177416|gb|ADC84662.1| DNA polymerase III, epsilon chain [Bifidobacterium animalis subsp. lactis BB-12] Length = 190 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 87/159 (54%), Gaps = 7/159 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D+ETTG ++NDRI EIGAV++ D +R Q L GR+ S +L GI+ Sbjct: 11 MNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQ--LVNPGRRVSARITELTGIS 68 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125 +E L+D+P I +F + +N + HN KFD+ F+ A +R+ D S R ID Sbjct: 69 NEMLEDQPVIEDILGDFIHW--TENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPID 126 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 T+ I R PS R+ L L +RYG I +H AL D+ Sbjct: 127 TMHIDRLLFPSERHRLVDLIQRYG--IGDVEEHRALSDA 163 >gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579] gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24] gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579] gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24] Length = 1435 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 421 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + + +IDTL + Sbjct: 479 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 535 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 536 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 580 >gi|15639630|ref|NP_219080.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025868|ref|YP_001933640.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp. pallidum SS14] gi|6014996|sp|O83649|DPO3E_TREPA RecName: Full=DNA polymerase III subunit epsilon gi|3322942|gb|AAC65617.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018443|gb|ACD71061.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp. pallidum SS14] gi|291060013|gb|ADD72748.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp. pallidum str. Chicago] Length = 215 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 10/174 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTGL ++ DRIIEIGAV D F + P+ R P+ K++ ITD+ L Sbjct: 18 FDTETTGLKAEEDRIIEIGAVT-FDRKGIIARFSTLIFPD-RAIPPDVSKINHITDDMLV 75 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 +KP F I S+F F + +AHNA FDV F+NAEL K PL +++DT ++A+ Sbjct: 76 NKPRFCEIVSDFSRFI--KGTVLVAHNANFDVEFLNAELSLCKKQPLS-HKVVDTYAMAQ 132 Query: 132 RKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 P + L +L ++G+T+ + H A D+ + +++ M+ ++ N Sbjct: 133 AVFPGLGRHQYRLQNLALQFGLTV--HAAHRAEDDARVCMELFTTMIAHHAKQN 184 >gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200] gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200] Length = 1435 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 421 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + + +IDTL + Sbjct: 479 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 535 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 536 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 580 >gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 1433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + + +IDTL + Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH1134] gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264] gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676] gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185] gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2] gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15] gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4] gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550] gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W] gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876] gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171] gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH1134] gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus B4264] gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876] gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W] gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550] gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4] gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15] gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2] gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185] gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676] gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pakistani str. T13001] gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171] Length = 1433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + + +IDTL + Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 1435 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 421 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + + +IDTL + Sbjct: 479 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 535 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 536 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 580 >gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 1433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + + +IDTL + Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9842] gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222] gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto str. T04001] gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9842] gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto str. T04001] gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222] Length = 1433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + + +IDTL + Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271] gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271] Length = 1433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + + +IDTL + Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342] gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342] Length = 1433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + + +IDTL + Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|183602347|ref|ZP_02963713.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019] gi|241191299|ref|YP_002968693.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196705|ref|YP_002970260.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218266|gb|EDT88911.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019] gi|240249691|gb|ACS46631.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251259|gb|ACS48198.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794292|gb|ADG33827.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis V9] Length = 188 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 87/159 (54%), Gaps = 7/159 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D+ETTG ++NDRI EIGAV++ D +R Q L GR+ S +L GI+ Sbjct: 9 MNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQ--LVNPGRRVSARITELTGIS 66 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125 +E L+D+P I +F + +N + HN KFD+ F+ A +R+ D S R ID Sbjct: 67 NEMLEDQPVIEDILGDFIHW--TENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPID 124 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 T+ I R PS R+ L L +RYG I +H AL D+ Sbjct: 125 TMHIDRLLFPSERHRLVDLIQRYG--IGDVEEHRALSDA 161 >gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407] gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407] gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis CT-43] Length = 1433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + + +IDTL + Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3] gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3] Length = 1433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + + +IDTL + Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424] gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424] Length = 1446 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 112/177 (63%), Gaps = 10/177 (5%) Query: 3 RKNKMRK---IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 +K K+R+ +VFD+ETTGL ++ DR+IEI AV++ + ++ + +F+ ++ P R S Sbjct: 417 KKLKLREATYVVFDVETTGLSAERDRLIEIAAVKVKNGAEID-SFESYINPE-RPISELI 474 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L ITD+ ++D P + ++F+++ +E + +AHNAKFD+GFI+ +R+ + + Sbjct: 475 TRLTSITDDDVRDAPVEKEVMTDFYNWLDEDDI-LVAHNAKFDLGFIDKSFERLGLENKN 533 Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + IDTL I+R ++ + R+ L++L K Y + + H A+ D+ ++++IKM+ Sbjct: 534 NAS-IDTLFISRAENKEAKRHGLSNLAKMYKVRLVQH--HRAIYDTKATAEIFIKML 587 >gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 1433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + + +IDTL + Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803] gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803] Length = 1433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + + +IDTL + Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2] gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2] Length = 1438 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 10/174 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTGL ++IIEI AV++ + + +R + F+ P+ R P + +L I DE Sbjct: 422 VVFDIETTGLSVTQNKIIEIAAVKMHEGKEIDR-YATFVNPHER--IPYNIQQLTNINDE 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + EF F +A +AHNA+FD+GFI A L+++ P + ++DTL Sbjct: 479 MVKDAPDVEPVMKEFVAFAG--DAVLVAHNARFDIGFIQATLRKMGL-PEMTNPVLDTLE 535 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +AR P+ +N LN+L +Y + + S H A+ D+ L++V ++ QI Sbjct: 536 LARLLFPTMKNHRLNTLTSKYKVAL--ESHHRAIDDTVALTEVLNGLLNDAEQI 587 >gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10] gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10] Length = 1433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL+ + DRI EIGAV++ + +R F F+ P G +KL GIT++ Sbjct: 423 VVFDIETTGLNPQQDRITEIGAVKVRNGQIVDR-FSAFVNP-GVSIPSFIVKLTGITNDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P + +EF +F Q + +AHNA FDVGFI + I + +P +DTL + Sbjct: 481 VKDAPPIEQVLNEFMEFI--QGSVLVAHNANFDVGFIKHNAKIIGEKVKNP--YLDTLEL 536 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R+ P R LN + K I + + H A+ DS + ++I + Sbjct: 537 CRKMFPELGRYKLNIVAKHLKIELENH--HRAVDDSMATAKIFIHCL 581 >gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp. spizizenii str. W23] gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. spizizenii str. W23] Length = 1437 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 97/167 (58%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ R S ++L GITD+ Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+D P + +F ++ + +AHNA FD+GF+N +++ + + +IDTL + Sbjct: 480 LRDAPDVVDVIRDFREWIGDDI--LVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLEL 537 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +P +N LN+LCK++ I ++ H A+ D+ + + +KM+ Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKML 582 >gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] Length = 1433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + + +IDTL + Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTN-NPVIDTLEL 533 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0442] gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B] gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0442] Length = 1433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINIGFKKAGLEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273] gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272] gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272] gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273] Length = 1433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168] gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168] gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. JH642] gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY] gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis] gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 1437 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 97/167 (58%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ R S ++L GITD+ Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+D P + +F ++ + +AHNA FD+GF+N +++ + + +IDTL + Sbjct: 480 LQDAPDVVDVIRDFREWIGDDI--LVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLEL 537 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +P +N LN+LCK++ I ++ H A+ D+ + + +KM+ Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKML 582 >gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621] gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621] Length = 1433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGIEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|288556947|ref|YP_003428882.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4] gi|288548107|gb|ADC51990.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4] Length = 1432 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 96/168 (57%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + IIE+ AV++ + +R F+ F P+ + ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYNTIIELAAVKIKNGEIIDR-FESFADPH-EPLTNTIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 +K +P + +F +F A +AHNA FD+GF+N Q+I D +P +IDTL Sbjct: 477 VKGQPEVGEVLKDFHEFVG--TATLVAHNASFDMGFLNVGYQKIGLGDATNP--VIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R +P +N LN+LCK++ I + S H A+ D+ + KM+ Sbjct: 533 LGRFLYPELKNHRLNTLCKKFDIELV--SHHRAIYDAEATGYLLWKMV 578 >gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42] gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42] Length = 1433 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LIDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4] gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis KBAB4] Length = 1433 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGIEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|227892603|ref|ZP_04010408.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047] gi|227865588|gb|EEJ73009.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047] Length = 1435 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 8/150 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + L ITDE Sbjct: 419 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + + + +F DF+ ++ HN +FDVGF+NA L+R K+ P ++DTL Sbjct: 477 VSAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEITQP--VVDTLE 532 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSK 157 ++R HP +R+ L+SL K+Y +++ H + Sbjct: 533 VSRLLHPEQNRHTLDSLAKKYNVSLEHHHR 562 >gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196] gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196] Length = 1433 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGIEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5] gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5] Length = 1437 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 97/167 (58%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ R S ++L GITD+ Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+D P + +F ++ + +AHNA FD+GF+N +++ + + +IDTL + Sbjct: 480 LQDAPDVVDVIRDFREWIGDDI--LVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLEL 537 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +P +N LN+LCK++ I ++ H A+ D+ + + +KM+ Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKML 582 >gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195] Length = 1437 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 97/167 (58%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ R S ++L GITD+ Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+D P + +F ++ + +AHNA FD+GF+N +++ + + +IDTL + Sbjct: 480 LQDAPDVVDVIRDFREWIGDDI--LVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLEL 537 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +P +N LN+LCK++ I ++ H A+ D+ + + +KM+ Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKML 582 >gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048] gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048] Length = 1435 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 421 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 479 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGIEKTKNP-----VID 531 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 532 TLELARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 580 >gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1433 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 L D P +F +F + + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEKWMGDHT--LVAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3] gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3] Length = 1435 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 94/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 421 VVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL + Sbjct: 479 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLAKTN-NPVIDTLEL 535 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 536 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 580 >gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28] gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28] Length = 1433 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 94/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL + Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLAKTN-NPVIDTLEL 533 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|320535302|ref|ZP_08035422.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Treponema phagedenis F0421] gi|320147834|gb|EFW39330.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Treponema phagedenis F0421] Length = 216 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 10/151 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTGL + D ++EIG ++ D+ F + + P G+ + ++ ITD L Sbjct: 18 FDTETTGLKQEEDSVVEIGGIKF-DHRGVIARFNILINP-GKPMPEDVTAVNNITDAMLA 75 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 DKP F+++ +F F + +AHNA FD+GFIN EL+R K PL +++IDTL +A+ Sbjct: 76 DKPPFNAVIPDFLRFI--KKTVLVAHNAPFDIGFINNELKRCKKPPLT-NKVIDTLVLAQ 132 Query: 132 RKHPS---SRNDLNSLCKRYGITI--SHRSK 157 P + L +L ++GIT +HR++ Sbjct: 133 EVFPGLGKHQYRLQNLALQFGITALEAHRAE 163 >gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 1415 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 98/162 (60%), Gaps = 11/162 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 +VFDIETTGL D+I EIGAV+++D T R Q+ N + PE ++ L IT+ Sbjct: 402 VVFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLI---NPQMLIPEKVQELTRITNA 458 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++P+ + +F+DF +++ +AHNAKFD FI + + D ++P I+DTLS Sbjct: 459 LVENEPTIEEVAPKFYDFI--KDSVLVAHNAKFDTAFIRRVFKENDLDFINP--ILDTLS 514 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 AR ++ +L +LCK++G+++ +HR+ + A +HL Sbjct: 515 FARATVKDTKKFNLATLCKKFGVSLVGAHRAVNDAEATAHLF 556 >gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29] gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29] Length = 1433 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 94/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL + Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHT--LVAHNASFDMGFINVGFKKAGLAKTN-NPVIDTLEL 533 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN++CK+ I ++ H A+ D+ + +KM+ Sbjct: 534 ARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus lacrimalis 315-B] gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus lacrimalis 315-B] Length = 1415 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 98/162 (60%), Gaps = 11/162 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 +VFDIETTGL D+I EIGAV+++D T R Q+ N + PE ++ L IT+ Sbjct: 402 VVFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLI---NPQMLIPEKVQELTRITNA 458 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++P+ + +F+DF +++ +AHNAKFD FI + + D ++P I+DTLS Sbjct: 459 LVENEPTIEEVAPKFYDFI--KDSVLVAHNAKFDTAFIRRVFKENDLDFINP--ILDTLS 514 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 AR ++ +L +LCK++G+++ +HR+ + A +HL Sbjct: 515 FARATVKDTKKFNLATLCKKFGVSLVGAHRAVNDAEATAHLF 556 >gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13] gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens CPE str. F4969] gi|24418366|sp|Q8XJR3|DPO3_CLOPE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13] gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens CPE str. F4969] Length = 1449 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D + +F F+ P + N P + +L IT Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKD-GEIVDSFSTFVDP--KVNIPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+ + +F +F N+ +AHNA FDVGFI L + K +P ++DT+ Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--NSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548 Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM 174 +AR +P + LN + K GI++ HR+ A + +L + KM Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKM 597 >gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM 2782] gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM 2782] Length = 1433 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL+ D+I EIGAV++ + +R F F+ P G +KL GITD+ Sbjct: 423 VVFDIETTGLNPHQDKITEIGAVKVRNGQIVDR-FSAFVNP-GVSIPSFIVKLTGITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P + +EF +F Q + +AHNA FDVGFI + + + +P IDTL + Sbjct: 481 VKDAPPVEQVLNEFMEFI--QGSVLVAHNANFDVGFIKQNAKLMGEKVKNP--YIDTLEL 536 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 R+ P R LN + K I + + H A+ DS + +++ Sbjct: 537 CRKMFPELGRYKLNIVAKHLKIELENH--HRAVDDSMATAKIFM 578 >gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9] gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9] Length = 1439 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 93/168 (55%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL N +IIE+ V++ + +R F F+ P+ K +L ITDE Sbjct: 424 VVFDIETTGLSIINCKIIELAGVKMRGGQEIDR-FSTFINPH-EKIPYHIQQLTNITDEM 481 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + D P EF +F +A +AHNA+FD+GFI A + I + ++P ++DTL Sbjct: 482 VVDAPELEPKLREFVEFIG--DAVLVAHNARFDIGFIQANCKAIGLPEVMNP--VLDTLE 537 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR HPS +N LN+L RY I + + H A+ DS L V ++ Sbjct: 538 LARFLHPSMKNHRLNTLSARYKINLENH--HRAIDDSIALGGVLFGLI 583 >gi|309776025|ref|ZP_07671017.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 3_1_53] gi|308916307|gb|EFP62055.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 3_1_53] Length = 1271 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 18/181 (9%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL- 60 I K VFD+ETTGL S+ D IIE G +++ ++ Q+F+ P P AL Sbjct: 214 IELEKGTYCVFDLETTGLSSRFDHIIEFGG-QIVKDRACIKSLQMFIKP------PVALS 266 Query: 61 ----KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 +L GIT+E +K+ SF+ E DF ++ +AHNA FD F+N EL RI + Sbjct: 267 AFTTELTGITEEHMKNAKSFADSIDEILDFIG--DSILVAHNATFDYNFLNDELARIGRK 324 Query: 117 P-LDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P ++P +IDTL +AR + L + + YGI H A D+ +L+ Y+ M Sbjct: 325 PIMNP--VIDTLDLARSMQADRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLAQTYMNM 382 Query: 175 M 175 + Sbjct: 383 L 383 >gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101] gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens SM101] Length = 1449 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D + +F F+ P + N P + +L IT Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKD-GEIVDSFSTFVDP--KVNIPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+ + +F +F N+ +AHNA FDVGFI L + K +P ++DT+ Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--NSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548 Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM 174 +AR +P + LN + K GI++ HR+ A + +L + KM Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKM 597 >gi|313899185|ref|ZP_07832705.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. HGF2] gi|312956008|gb|EFR37656.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. HGF2] Length = 1448 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 18/181 (9%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL- 60 I K VFD+ETTGL S+ D IIE G +++ ++ Q+F+ P P AL Sbjct: 391 IELEKGTYCVFDLETTGLSSRFDHIIEFGG-QIVKDRACIKSLQLFIKP------PVALS 443 Query: 61 ----KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 +L GIT+E +K+ SF+ E DF ++ +AHNA FD F+N EL RI + Sbjct: 444 AFTTELTGITEEHMKNAKSFADSIDEILDFIG--DSILVAHNATFDYNFLNDELARIGRP 501 Query: 117 P-LDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P ++P +IDTL +AR + L + + YGI H A D+ +L+ Y+ M Sbjct: 502 PIMNP--VIDTLDLARSMQADRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLAQTYMNM 559 Query: 175 M 175 + Sbjct: 560 L 560 >gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU121] Length = 1438 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ K S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPH-EKLSETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + ++F ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LTDAPEIEDVLTDFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVDLTQH--HRAIYDTEATAYIFIKMV 582 >gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942] gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942] Length = 1437 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL + D IIE+ AV++ ++ F+ F P+ S ++L GITD+ Sbjct: 422 IVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FERFANPH-HPLSATTIELTGITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D P + +F ++ ++ +AHNA FD+GF+N +R+ K + +IDTL + Sbjct: 480 VRDAPDVIDVVRDFREWIDDDI--LVAHNASFDMGFLNVAYKRLLKVEKAQNPVIDTLEL 537 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +P +N LN+LCK++ I ++ H A+ D+ + +KM+ Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLLLKML 582 >gi|256112395|ref|ZP_05453316.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] gi|265993832|ref|ZP_06106389.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] gi|262764813|gb|EEZ10734.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] Length = 80 Score = 91.7 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 44/80 (55%), Positives = 57/80 (71%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDF 86 +E L DKP F+ I EF +F Sbjct: 61 NEQLLDKPVFAEILDEFLEF 80 >gi|300361904|ref|ZP_07058081.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03] gi|300354523|gb|EFJ70394.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03] Length = 1432 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + L ITDE Sbjct: 416 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 473 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F DF+ ++ HN +FDVGF+NA L+R D + ++DTL + Sbjct: 474 VGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-QPVVDTLEV 530 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP +R+ L+SL K+Y + + H + Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 559 >gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758] gi|225207389|gb|EEG89743.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758] Length = 1535 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 13/169 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG + DRIIEIGAV++ D T++ F F+ P R +L ITDE Sbjct: 490 VVFDIETTGFSAVTDRIIEIGAVKVEDGKITDK-FSTFVNPK-RPIPFRITELTSITDEM 547 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127 + D P +I +F +F +A +AHNA FDVGFI N + Q+I D +DT+ Sbjct: 548 VIDSPDIETILPQFIEFIG--DAVLVAHNASFDVGFIEQNCKRQKIEAD----FTYVDTV 601 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++AR P+ +R L+++ K + IS + H A+ D+ +++++K + Sbjct: 602 ALARVLLPALNRFKLDTVAK--ALNISLENHHRAVDDAGCTAEIFVKFV 648 >gi|282850817|ref|ZP_06260191.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 224-1] gi|282557769|gb|EFB63357.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 224-1] Length = 1389 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + L ITDE Sbjct: 373 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 430 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F DF+ ++ HN +FDVGF+NA L+R D + ++DTL + Sbjct: 431 VGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-QPVVDTLEV 487 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP +R+ L+SL K+Y + + H + Sbjct: 488 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 516 >gi|238852616|ref|ZP_04643026.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 202-4] gi|238834762|gb|EEQ26989.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 202-4] Length = 1432 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + L ITDE Sbjct: 416 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 473 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F DF+ ++ HN +FDVGF+NA L+R D + ++DTL + Sbjct: 474 VGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-QPVVDTLEV 530 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP +R+ L+SL K+Y + + H + Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 559 >gi|116629466|ref|YP_814638.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri ATCC 33323] gi|116095048|gb|ABJ60200.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus gasseri ATCC 33323] Length = 1432 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + L ITDE Sbjct: 416 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 473 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F DF+ ++ HN +FDVGF+NA L+R D + ++DTL + Sbjct: 474 VGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-QPVVDTLEV 530 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP +R+ L+SL K+Y + + H + Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 559 >gi|229824922|ref|ZP_04450991.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC 49176] gi|229790925|gb|EEP27039.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC 49176] Length = 1463 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 104/187 (55%), Gaps = 16/187 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTG KN RIIEIGAV+++ K F F+ P +++ PE + KL IT + Sbjct: 436 VVFDIETTGFGPKNCRIIEIGAVKVMG-GKVIDKFSAFVNP--KQSIPEEITKLTSITQD 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P I F +F + +AHNA FD FI ++R+ + + I DT++ Sbjct: 493 MVINEPEIDVILPAFLEFC--KGCFLVAHNASFDTSFIFENMKRLGLN--EDFTIADTVT 548 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV-----GGSQIN 182 I+R P +N L+++ +R GIT+ H H A+ D+ +++YIK+ G+++ Sbjct: 549 ISRVLLPGLKNYKLDTVAERLGITLEHH--HRAVDDAGCTAEIYIKLCELAVTKYGNELL 606 Query: 183 FGFKTNE 189 F TNE Sbjct: 607 GNFNTNE 613 >gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122] gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122] Length = 1438 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 100/167 (59%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ ++IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 423 VVFDVETTGLSNQYNKIIELAAVKVHNGEIIDK-FERFSNPHERL-SETIINLTHITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL + Sbjct: 481 LVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMV 582 >gi|161507686|ref|YP_001577640.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348675|gb|ABX27349.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 1438 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + L ITDE Sbjct: 422 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTINLTSITDEM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F DF+ ++ HN +FDVGF+NA L+R + ++DTL + Sbjct: 480 VSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEI-TQPVVDTLEV 536 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP +R+ L+SL K+Y +++ H + Sbjct: 537 SRLLHPEQNRHTLDSLAKKYNVSLEHHHR 565 >gi|323466335|gb|ADX70022.1| DNA polymerase subunit III [Lactobacillus helveticus H10] Length = 1436 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + L ITDE Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTINLTSITDEM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F DF+ ++ HN +FDVGF+NA L+R + ++DTL + Sbjct: 478 VSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEIT-QPVVDTLEV 534 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP +R+ L+SL K+Y +++ H + Sbjct: 535 SRLLHPEQNRHTLDSLAKKYNVSLEHHHR 563 >gi|260101367|ref|ZP_05751604.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075] gi|260084819|gb|EEW68939.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075] Length = 1436 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + L ITDE Sbjct: 420 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTINLTSITDEM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F DF+ ++ HN +FDVGF+NA L+R + ++DTL + Sbjct: 478 VSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEI-TQPVVDTLEV 534 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP +R+ L+SL K+Y +++ H + Sbjct: 535 SRLLHPEQNRHTLDSLAKKYNVSLEHHHR 563 >gi|325957051|ref|YP_004292463.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC] gi|325333616|gb|ADZ07524.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC] gi|327183774|gb|AEA32221.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1118] Length = 1435 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + L ITDE Sbjct: 419 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F DF+ ++ HN +FDVGF+NA L+R + ++DTL + Sbjct: 477 VSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEIT-QPVVDTLEV 533 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP +R+ L+SL K+Y +++ H + Sbjct: 534 SRLLHPEQNRHTLDSLAKKYNVSLEHHHR 562 >gi|315038577|ref|YP_004032145.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] gi|312276710|gb|ADQ59350.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] Length = 1435 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + L ITDE Sbjct: 419 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDKFINPH-HPLSEQTINLTSITDEM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F DF+ ++ HN +FDVGF+NA L+R + ++DTL + Sbjct: 477 VSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEIT-QPVVDTLEV 533 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP +R+ L+SL K+Y +++ H + Sbjct: 534 SRLLHPEQNRHTLDSLAKKYNVSLEHHHR 562 >gi|144897909|emb|CAM74773.1| DNA polymerase III, epsilon subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 677 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IVFD ETTGL S+ D+I++IGAV +++ + +F + P GR PE++K HGITD Sbjct: 485 IVFDTETTGLQPSQGDQIVQIGAVRIVNGRILSGESFNRIVNP-GRVIPPESIKFHGITD 543 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +KDKP + +F F +A +AHNA FD+ F+ ++ +P ++DT+ Sbjct: 544 DMVKDKPPLGVVLPQFKAF--AADAVLVAHNAAFDLKFLRMNERQFGLKFDNP--VLDTM 599 Query: 128 SIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++ P + + L+++C R GI+I+ R H AL D+ + + V + Sbjct: 600 MLSNYLDGPETGHSLDAICDRLGISITDR--HTALGDAIVTAAVLL 643 >gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis HTE831] gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis HTE831] Length = 1428 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 90/161 (55%), Gaps = 8/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ +R F+ F P+ S + L GITD+ Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKIKGGEIVDR-FESFANPH-HALSQTTIDLTGITDDM 472 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P + + +F + N +AHNA FD+GF+N QRI+ + + ++DTL + Sbjct: 473 VNDAPEVADVLKDFHTWMG--NDILVAHNASFDMGFLNQGFQRIDYEKAS-NPVVDTLEL 529 Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167 AR P RN LN+LCK I ++ HR+ + A +LL Sbjct: 530 ARFLLPELRNHRLNTLCKHLDIELTQHHRAIYDAEATGYLL 570 >gi|325282490|ref|YP_004255031.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP] gi|324314299|gb|ADY25414.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP] Length = 185 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 10/174 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSP-----EALKL 62 +VFD+ETTGL + D I+EIGA+ + D T +Q + P A ++ Sbjct: 11 AVVFDLETTGLSPERDGIVEIGALRIRDGRVVTEDPYQTLVRPQNSLGESVTIPWRAERI 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++E + PS + + EF ++ +A +AHN FD GF+ A + P R Sbjct: 71 HGISNEMVVAAPSIAQVLPEFLEWAG--DAPLVAHNIGFDSGFMRAAARHCGLR-WAPQR 127 Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I T+ ++RR P R++L+SL R G++ S + +H +L D + + Y++++ Sbjct: 128 EICTVQLSRRAFPRERRHNLDSLAGRLGLSFSPQGRHRSLGDVEVTAAAYLRLL 181 >gi|150390440|ref|YP_001320489.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF] gi|149950302|gb|ABR48830.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF] Length = 1432 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 97/167 (58%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFDIETTGL ++NDRI EIGAV++ D S+ F + P + S + ++L GITD+ Sbjct: 421 IVFDIETTGLSNRNDRITEIGAVKIKD-SQVIDKFSALVNPEMKIPS-KIVELTGITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + DK + I F F ++ +AHN+ FD+GFI RI + +++IDTL + Sbjct: 479 VVDKQTIDVILPGFLAFIG--SSPVVAHNSDFDMGFIRENANRIERTI--ENQVIDTLKL 534 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R P R+ LNS+ K + +S + H A+ D+ +++++K + Sbjct: 535 SRILLPQLKRHRLNSIAKE--LNVSLENHHRAVDDAQATAEIFVKFI 579 >gi|159897533|ref|YP_001543780.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC 23779] gi|159890572|gb|ABX03652.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 282 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 95/170 (55%), Gaps = 11/170 (6%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+E+TGLD + RI E+ A+ + +R FL R+ P A ++GI+ E Sbjct: 27 VLFDMESTGLDVQIGHRICEMAAMRIQGREIIDRC--EFLVNPQREIDPAAFAVNGISAE 84 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + PSF I+ + F+E A +AHNA FD+GF+ +EL RI+ PL+ + +IDTL+ Sbjct: 85 MVANAPSFGEIWPKVNKLFHE--AVLVAHNAYFDIGFLTSELSRIDLPPLE-TPVIDTLA 141 Query: 129 IARRKHPSSRNDLNSLCKRYG-ITISHRSKHGAL----LDSHLLSDVYIK 173 +ARR + R +L SL G SHR+ + + HLL +Y K Sbjct: 142 LARRYITARRYNLTSLATNLGEKAPSHRAMSDVVALRPVFEHLLDILYRK 191 >gi|218295641|ref|ZP_03496437.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23] gi|218243800|gb|EED10327.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23] Length = 627 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 12/166 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETTGLD + D II +GAV LL L GR + ++HG+T E L Sbjct: 445 AFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLTWEML 504 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KDKP + F F + + +AHN FD+ F + K +D ++DTL +A Sbjct: 505 KDKPKLEEVLPAFRAFL--EGSVLVAHNGAFDMAF-------LRKVGIDQPPLVDTLLLA 555 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P ++ L L +R+G+ + R H AL D+ + ++VY +M+ Sbjct: 556 HLLFPDLKDHRLERLAERFGVPVLGR--HTALGDALMTAEVYARMI 599 >gi|158320555|ref|YP_001513062.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs] gi|158140754|gb|ABW19066.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs] Length = 1441 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 17/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEAL-KLHGITD 67 I+FDIETTGL SKND I EIGA+++ K NR F N ++ PE + +L GI+D Sbjct: 427 IIFDIETTGLSSKNDEITEIGAIKI----KNNRIIDSFSTLINPERSIPEKIVELTGISD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIID 125 + +KD+P+ + +F DF + +AHN+ FD GFI AE ++ D + ID Sbjct: 483 DMVKDQPTIEVVLPQFLDFIG--DCPVVAHNSDFDTGFIRDKAERYELSFDNI----AID 536 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P ++ LN + K + IS + H A+ D+ ++++IK + Sbjct: 537 TLKLARALLPDLKKHRLNVIAKE--LNISLENHHRAVDDAKATAEIFIKFV 585 >gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna BVS033A4] gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna BVS033A4] Length = 1421 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 11/181 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTGL + ++I EIGAV+++D + Q+ N PE + +L IT+E Sbjct: 403 VVFDIETTGLSNATEKITEIGAVKIVDNKIVDEFNQLI---NPEIPIPEKITELTSITNE 459 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P ++ EF F + IAHNA FD+GFI + +P+ IDTL+ Sbjct: 460 MVKDMPKIDAVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCIDLGINPV--RTYIDTLA 515 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR P +N L++L K+Y + + + H A D+ +V+I M+ Q F F Sbjct: 516 FARALEPHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMVNNLEQRGFKFDI 573 Query: 188 N 188 N Sbjct: 574 N 574 >gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328] gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328] Length = 1421 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 11/181 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTGL + ++I EIGAV+++D + Q+ N PE + +L IT+E Sbjct: 403 VVFDIETTGLSNATEKITEIGAVKIVDNKIVDEFNQLI---NPEIPIPEKITELTSITNE 459 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P ++ EF F + IAHNA FD+GFI + +P+ IDTL+ Sbjct: 460 MVKDMPKIDAVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCIDLGINPV--RTYIDTLA 515 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR P +N L++L K+Y + + + H A D+ +V+I M+ Q F F Sbjct: 516 FARALEPHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMVNNLEQRGFKFDI 573 Query: 188 N 188 N Sbjct: 574 N 574 >gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325] gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325] Length = 1449 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 106/168 (63%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ DR+IEI AV++ + S+ + +F+ ++ P R S +L ITD+ Sbjct: 430 VVFDVETTGLSAERDRLIEIAAVKVKNGSEID-SFESYINPR-RPISELITRLTSITDDD 487 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 +KD P + + F+++ +E + +AHNAKFD+GF++ +R+ K+ + S IDTL Sbjct: 488 VKDAPFEEEVMTNFYNWLDEDDI-LVAHNAKFDLGFLDKSFERLGLKNKNNAS--IDTLF 544 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+R ++ + R+ L++L K Y + + H A+ D+ +++++KM+ Sbjct: 545 ISRAENKEAKRHGLSNLAKLYKVRLVQH--HRAIYDTKATAEIFVKML 590 >gi|42782909|ref|NP_980156.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987] gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus ATCC 10987] Length = 970 Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 419 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 477 LTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNP-----VID 529 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ Sbjct: 530 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 578 >gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10] gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10] Length = 1438 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 10/163 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTGL ++IIE+ AV++ + + R + F+ P+ R P + +L I D+ Sbjct: 422 VVFDIETTGLSITANKIIELAAVKMHEGKEIGR-YATFVNPHER--IPYHIQQLTNINDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + EF +F + +AHNA+FD+GFI A L+ D L+ + +DTL Sbjct: 479 MVKDAPELEPVLKEFVEFVG--DGVLVAHNARFDMGFIQAALKNAGMDTLE-NPYLDTLE 535 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +AR HP +N LN+L +Y + + S H A+ D+ L+ + Sbjct: 536 LARLVHPGLKNHRLNTLADKYKVLL--ESHHRAIDDTIALAGI 576 >gi|58337539|ref|YP_194124.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM] gi|227904180|ref|ZP_04021985.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796] gi|58254856|gb|AAV43093.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM] gi|227868199|gb|EEJ75620.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796] Length = 1437 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + L ITDE Sbjct: 421 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTINLTSITDEM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + + +F DF+ ++ HN +FDVGF+NA L+R + ++DTL + Sbjct: 479 VSAADDEAIVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRNGFSEIT-QPVVDTLEV 535 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP +R+ L+SL K+Y +++ H + Sbjct: 536 SRLLHPEQNRHTLDSLAKKYNVSLEHHHR 564 >gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus sp. HGF5] gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus sp. HGF5] Length = 1438 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 10/163 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTGL ++IIE+ AV++ + + R + F+ P+ R P + +L I D+ Sbjct: 422 VVFDIETTGLSITANKIIELAAVKMHEGKEIGR-YATFVNPHER--IPYHIQQLTNINDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + EF +F + +AHNA+FD+GFI A L+ D L+ + +DTL Sbjct: 479 MVKDAPELEPVLKEFVEFVG--DGVLVAHNARFDMGFIQAALKNAGMDTLE-NPYLDTLE 535 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +AR HP +N LN+L +Y + + S H A+ D+ L+ + Sbjct: 536 LARLVHPGLKNHRLNTLADKYKVLL--ESHHRAIDDTIALAGI 576 >gi|295426318|ref|ZP_06818977.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664] gi|295063991|gb|EFG54940.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664] Length = 1435 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + K F F+ P+ S + + L ITDE Sbjct: 419 VIFDVETTGLSSVYDTIIEIGAVKMKN-GKVLERFDKFINPH-HPLSDQTINLTSITDEM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F DF+ + HN +FDVGF+NA L+R + + ++DTL + Sbjct: 477 VGAADDEDVVIRQFKDFYGDM--PLCGHNVQFDVGFVNAALRRAGLEEIK-QPVVDTLEV 533 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP +R+ L+SL K+Y + + H + Sbjct: 534 SRLLHPEQTRHTLDSLVKKYDVVLEHHHR 562 >gi|94985918|ref|YP_605282.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM 11300] gi|94556199|gb|ABF46113.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM 11300] Length = 180 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 10/176 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP-----EAL 60 M +VFD+ETTGL + D I+EIGA+ ++D + F+ + P A Sbjct: 1 MNVVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQ 60 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI+D ++D P + EF DF AHN FD F+ A +R P Sbjct: 61 RVHGISDAMVQDAPELGQVLPEFLDFVGRSAVA--AHNIGFDSSFMRAAARRCGLVWAPP 118 Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + T+ ++RR P R ++L+ L +R G++ + +H +L D + ++ ++++M Sbjct: 119 AEYC-TVQLSRRAFPRERTHNLDVLAQRLGLSFAPGGRHRSLGDVQVTAEAFVRLM 173 >gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124] gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens B str. ATCC 3626] gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens ATCC 13124] gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens B str. ATCC 3626] Length = 1449 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D + +F F+ P + N P + +L IT Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKD-GEIVDSFSTFVDP--KVNIPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+ + +F +F ++ +AHNA FDVGFI L + K +P ++DT+ Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548 Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM 174 +AR +P + LN + K GI++ HR+ A + +L + KM Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKM 597 >gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens C str. JGS1495] gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens C str. JGS1495] Length = 1449 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D + +F F+ P + N P + +L IT Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKD-GEIVDSFSTFVDP--KVNIPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+ + +F +F ++ +AHNA FDVGFI L + K +P ++DT+ Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548 Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM 174 +AR +P + LN + K GI++ HR+ A + +L + KM Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKM 597 >gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b] gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b] Length = 1430 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 8/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + ++IIE+ V++ D +R F+ F P S ++L GITD+ Sbjct: 411 VVFDVETTGLSAVYNKIIELAGVKIKDGEIIDR-FEAFADPK-HALSATTIELTGITDDM 468 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ +P I F D+ ++ +AHNA FD+GF+ A L+ +P D +IDTL + Sbjct: 469 VQGQPDPEVITKRFVDWCG--DSILVAHNASFDMGFLEATLRSGGHEP-DDYPVIDTLEL 525 Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLL 167 AR P+ +N LN+L KR+ I ++ HR+ + A ++LL Sbjct: 526 ARTLMPTLKNHRLNTLAKRFDIELTQHHRAIYDAEATAYLL 566 >gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens E str. JGS1987] gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens E str. JGS1987] Length = 1449 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D + +F F+ P + N P + +L IT Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKD-GEIVDSFSTFVDP--KVNIPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+ + +F +F ++ +AHNA FDVGFI L + K +P ++DT+ Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548 Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM 174 +AR +P + LN + K GI++ HR+ A + +L + KM Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKM 597 >gi|118479040|ref|YP_896191.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al Hakam] gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al Hakam] Length = 972 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 421 VVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDDM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPSRIID 125 L D P +F +F ++ + +AHNA FD+GFIN ++ K+P +ID Sbjct: 479 LTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNP-----VID 531 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ Sbjct: 532 TLELARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKML 580 >gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens NCTC 8239] gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens NCTC 8239] Length = 1449 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D + +F F+ P + N P + +L IT Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKD-GEIVDSFSTFVDP--KVNIPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+ + +F +F ++ +AHNA FDVGFI L + K +P ++DT+ Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548 Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM 174 +AR +P + LN + K GI++ HR+ A + +L + KM Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKM 597 >gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10] gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10] Length = 1433 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 8/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + IIE+ AV++ +R F+ F P+ SP + L GITD+ Sbjct: 420 VVFDVETTGLSAVYNTIIELAAVKVQGGEIIDR-FESFANPH-EPLSPTIIDLTGITDDM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P + +F + N +AHNA FD+ F++A Q+ D + +IDTL + Sbjct: 478 VADAPEIHDVLKDFKAWCG--NDILVAHNAAFDMAFLDAGYQKAGMDKA-ANPVIDTLEM 534 Query: 130 ARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 R +P+ +N LN+LCK++ I + HR+ + A HLL Sbjct: 535 GRMLYPTFKNYRLNTLCKKFNIELVSHHRAIYDAEATGHLL 575 >gi|169350436|ref|ZP_02867374.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552] gi|169292756|gb|EDS74889.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552] Length = 1439 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 6/167 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL +D I E GAV++ + +R Q F+ P G+ S L IT+E Sbjct: 403 VAFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-MQKFINP-GKTISSRISSLTNITNEM 460 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K++P+ + E +FF + +AHNA FDVGF+N L+R N + + IID+L++ Sbjct: 461 VKNEPTIDKVLPEIMEFFGD--CILVAHNASFDVGFLNENLRRSNMSEIK-NPIIDSLAL 517 Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P L ++C+ Y + H A D+ +L DV+ M+ Sbjct: 518 ARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAKVLGDVFNLMI 564 >gi|315651645|ref|ZP_07904656.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986] gi|315486099|gb|EFU76470.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986] Length = 1483 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 96/167 (57%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFDIETTG +KND I EIGAV++++ +R F F+ P R +L I+D Sbjct: 460 IVFDIETTGFSAKNDAITEIGAVKVVNGEIVDR-FSTFVNPK-RPIPFRIEELTHISDAM 517 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P I +F DF ++ +AHNA FD GFI +RIN + +PS IIDT+++ Sbjct: 518 VVNAPVIEEILPKFLDFC--EDYTIVAHNAGFDTGFIRENAKRINAE-YNPS-IIDTVAM 573 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +R L+++CK + IS H A+ D+ ++++++ + Sbjct: 574 ARLLLPDLNRFKLDTVCK--ALNISLEGHHRAVNDAEATAEIWVEFI 618 >gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis] Length = 1437 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 95/167 (56%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ R S ++L GITD+ Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+D P + +F + +AHNA FD+GF+N +++ + + +IDTL + Sbjct: 480 LQDAPDVVDVIRDFRVRIGDDI--LVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLEL 537 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +P +N LN+LCK++ I ++ H A+ D+ + + +KM+ Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKML 582 >gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella adiacens ATCC 49175] gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella adiacens ATCC 49175] Length = 1444 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 11/178 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ + ++ F+ F+ P G S ++L GITD+ Sbjct: 428 VVFDVETTGLSAIYDSIIELAAVKMKNGVVIDK-FEEFIDP-GHPLSATTIQLTGITDDM 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S + EF +F ++ +AHNA FD+GF+N + + + + +IDTL + Sbjct: 486 VRGSKSVEQVLKEFHEF--SKDCILVAHNASFDMGFLNTGYENVGIERTE-QPVIDTLEL 542 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSH---LLSDVYIKMMVGGSQINF 183 +R HP ++ LN+L KRY + + H A+ DS L +++K Q+ + Sbjct: 543 SRMLHPQLKSHRLNTLAKRYNVALEQH--HRAVYDSETTGYLCHIFLKEAANDHQLLY 598 >gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551] gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551] Length = 1436 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 96/162 (59%), Gaps = 8/162 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ + +R F+ F P+ S ++L GITD+ Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKMKEGEIIDR-FERFANPH-HPLSATTIELTGITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P S + +F ++ ++ +AHNA FD+GF+N LQ+I + + +IDTL + Sbjct: 480 VQNAPEISEVLRDFHEWMG--DSILVAHNASFDMGFLNMGLQKIGLEKA-ANGVIDTLEL 536 Query: 130 ARRKHPSSRND-LNSLCKRYGITI--SHRSKHGALLDSHLLS 168 R +P +N LN+L K++ I + HR+ + A +LL+ Sbjct: 537 GRFLYPHMKNHRLNTLAKKFDIELVQHHRAIYDAETTGYLLN 578 >gi|299823038|ref|ZP_07054924.1| DNA polymerase III PolC [Listeria grayi DSM 20601] gi|299816567|gb|EFI83805.1| DNA polymerase III PolC [Listeria grayi DSM 20601] Length = 1470 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 94/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV+ ++ + TF+ F+ P GR S + L GITD+ Sbjct: 455 VVFDVETTGLSAVYDTIIELAAVK-MENGQVVDTFESFIDP-GRPLSATIINLTGITDDM 512 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LK ++ F ++ +A +AHNA FD+GF+N + D + + +IDTL + Sbjct: 513 LKGSDDIETVLKRFKEWCG--DAVLVAHNASFDMGFLNTAYSKAGIDKAE-NAVIDTLEL 569 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR +P +N LN+L K++ I + H A+ D+ + + K++ Sbjct: 570 ARFLYPHFKNHRLNTLTKKFNIVLEQH--HRAVFDAEATAYLAWKLI 614 >gi|257091883|ref|YP_003165524.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044407|gb|ACV33595.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 735 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 105/195 (53%), Gaps = 15/195 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTG++ + D II+IGAV +++ N F + P R PE +++HGI+D+ Sbjct: 547 VFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPE-RFIRPEGIRIHGISDD 605 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +P+ + DF N + +AHNA FD+ F+ + +R P ++DTL Sbjct: 606 MVRGQPNIEVVLPALHDFCN--DTVLVAHNAAFDMRFLQLKEERTGVAFSQP--VLDTLL 661 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-----VGGSQIN 182 ++ HP+ + L+S+ +R GI I R H AL D+ ++V++KM+ +G + + Sbjct: 662 LSGVLHPNQESHQLDSIAERLGIGIEDR--HNALGDACATAEVFLKMLPLLAQMGITTLR 719 Query: 183 FGFKTNEDRFFKEEK 197 + +E +F K Sbjct: 720 QALEASEKTYFARVK 734 >gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319] gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319] Length = 1436 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 96/162 (59%), Gaps = 8/162 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ + +R F+ F P+ S ++L GITD+ Sbjct: 422 VVFDVETTGLSAVYDTIIELAAVKMKEGEIIDR-FERFANPH-HPLSATTIELTGITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P S + +F ++ ++ +AHNA FD+GF+N LQ+I + + +IDTL + Sbjct: 480 VQNAPEISEVLRDFHEWMG--DSILVAHNASFDMGFLNMGLQKIGLEKA-ANGVIDTLEL 536 Query: 130 ARRKHPSSRND-LNSLCKRYGITI--SHRSKHGALLDSHLLS 168 R +P +N LN+L K++ I + HR+ + A +LL+ Sbjct: 537 GRFLYPHMKNHRLNTLAKKFDIELVQHHRAIYDAETTGYLLN 578 >gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254] gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254] Length = 1151 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 92/168 (54%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG D ND+IIEIGAV++ F F+ P P+ +L ITDE Sbjct: 118 VVFDIETTGFDPFNDKIIEIGAVKMRGREIIGE-FSEFVNPE-IPIPPKITELTTITDEM 175 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128 + + ++ F +F + +AHNAKFDVGFI Q+ + L+ S +IDTL Sbjct: 176 VANAEKIETVLPRFLEFCTDTTV--VAHNAKFDVGFIK---QKTIEQGLEYSPSVIDTLP 230 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P SR L +L K +GIT+ + H A+ D+ ++V+ K + Sbjct: 231 LARTLLPDSRGYGLANLVKYFGITL--ETHHRAVDDAKATAEVFQKFL 276 >gi|331085480|ref|ZP_08334565.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407718|gb|EGG87216.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1492 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 91/170 (53%), Gaps = 15/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66 +VFDIETTG + DRIIEIGAV++ D + +R F F+ P P E +L IT Sbjct: 464 VVFDIETTGFSAAEDRIIEIGAVKITDGAIVDR-FSTFVNP----EVPIPFEIQQLTHIT 518 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ + + P F DF E + +AHNA FDVGFI R+ + S +DT Sbjct: 519 DDMVLEAPKIEEALPAFLDFVGE--SALVAHNAGFDVGFIEQNCVRLGRSRTFTS--VDT 574 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +AR P+ S+ LN + K + IS + H A+ D+ +++Y+K + Sbjct: 575 VGLARVLLPTLSKYKLNIVAK--ALNISLENHHRAVDDAAATAEIYVKFI 622 >gi|331090692|ref|ZP_08339541.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] gi|330400106|gb|EGG79757.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] Length = 1487 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 15/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66 +VFDIETTG S D+IIEIGAV++ + +R + F+ P P E KL IT Sbjct: 453 VVFDIETTGFSSVKDKIIEIGAVKVENGKIVSR-YSTFVNP----EVPIPFEITKLTSIT 507 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P ++ EF ++ +A +AHNA FDVGFI +R+ + S +DT Sbjct: 508 DAMVIDAPKIETVLPEFMEYVG--DAVLVAHNAGFDVGFIEENCRRLGMERKLTS--VDT 563 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++AR P+ SR LN + K GI++ + H A+ D+ +++++K + Sbjct: 564 VALARVLLPTLSRYKLNIVAKTLGISLENH--HRAVDDAGATAEIFVKFV 611 >gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] Length = 1480 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 98/168 (58%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 IVFDIETTG +KND I EIGAV+++ +R F F+ P R+ P + +L I+D Sbjct: 457 IVFDIETTGFSAKNDAITEIGAVKVVKGEIVDR-FSTFVNP--RRPIPFKIEELTHISDA 513 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P I +F DF ++ +AHNA FD GFI ++INK+ +PS IIDT++ Sbjct: 514 MVMNAPFIEDILPKFLDFC--EDYIIVAHNAGFDTGFIRENAKKINKE-YNPS-IIDTVA 569 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P +R L+++CK + IS H A+ D+ + ++++ + Sbjct: 570 MARLLLPELNRFKLDTVCK--ALNISLEGHHRAVNDAEATAQIWVEFI 615 >gi|325660790|ref|ZP_08149418.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] gi|325472864|gb|EGC76074.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] Length = 1492 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 91/170 (53%), Gaps = 15/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66 +VFDIETTG + DRIIEIGAV++ D + +R F F+ P P E +L IT Sbjct: 464 VVFDIETTGFSAAEDRIIEIGAVKITDGAIVDR-FSTFVNP----EVPIPFEIQQLTHIT 518 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ + + P F DF E + +AHNA FDVGFI R+ + S +DT Sbjct: 519 DDMVLEAPKIEEALPAFLDFVGE--SALVAHNAGFDVGFIEQNCVRLGRSRTFTS--VDT 574 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +AR P+ S+ LN + K + IS + H A+ D+ +++Y+K + Sbjct: 575 VGLARVLLPTLSKYKLNIVAK--ALNISLENHHRAVDDAAATAEIYVKFI 622 >gi|119387281|ref|YP_918315.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] gi|119377856|gb|ABL72619.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] Length = 659 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 6/175 (3%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + +VFD ETTGLD DRI++I + + T F + P GR P + + Sbjct: 447 RLADLTCVVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDP-GRPIPPASTAV 505 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITD + P ++ + F F ++ +AHNA FD+GF+ + D ++ Sbjct: 506 HGITDAMVAGAPDMTAALTAFHHF--AEDTVLVAHNAPFDMGFLRRAVPETGAH-FD-NQ 561 Query: 123 IIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++DT+ + A S+ + L++L +R GI I ++H A+ D+ ++ Y++++ Sbjct: 562 VLDTVLLSAMLWGQSAPHSLDALTERLGIVIPPEARHTAMGDARATAEAYLRLIA 616 >gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 1438 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 103/179 (57%), Gaps = 9/179 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL ++IIEI AV++ + + +R + F+ P+ R +L I D+ Sbjct: 422 VVFDIETTGLSVTQNKIIEIAAVKMREGKEIDR-YATFVNPHERIPY-HIQQLTNINDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P + F +F ++A +AHNA+FD F+NA+L+ + P+ + ++DTL + Sbjct: 480 VKDAPDVEPVLKRFVEF--AEDAILVAHNARFDYDFVNAKLKELGL-PIMENPVLDTLEL 536 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR P+ +N LN+L +Y +++ + H A+ D+ L ++ ++ +I G+KT Sbjct: 537 ARMLFPTMKNHRLNTLAAKYKVSLENH--HRAIDDTVALGEILNGLLDDAVKIE-GYKT 592 >gi|210622608|ref|ZP_03293268.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275] gi|210154109|gb|EEA85115.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275] Length = 1426 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 97/168 (57%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG + ND+I EIGAV++ D+ +R F + P + S +L GIT+E Sbjct: 413 VVFDLETTGFSNINDKITEIGAVKIRDFEIVDR-FSELVNPE-KDISYRVQELTGITNEM 470 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLS 128 +KDKP+ I +F +F + +AHNA FD GFI +Q+ + L+ ++ +DTL Sbjct: 471 VKDKPTIEEILPKFMEFVGDDV--LVAHNADFDTGFI---MQKCKEQGLEYKNKKVDTLM 525 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P+ R L+ + K G+ + + H A+ D+ ++++IK + Sbjct: 526 LARIMLPNLKRYKLDKVAKEVGVQLLNH--HRAVDDAEATANIFIKFL 571 >gi|153814386|ref|ZP_01967054.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756] gi|145848782|gb|EDK25700.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756] Length = 1459 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 9/165 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFDIETTG S D IIEIGAV++ D T+R F F+ P R E L ITDE Sbjct: 423 IVFDIETTGFSSIKDAIIEIGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDEM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + +F +F + +AHNA FDVGFI + + D +DT+++ Sbjct: 481 VMDSPTIDVVLPQFLEFAG--DGVLVAHNAGFDVGFIEQNCRSLGLS--DEFVYLDTVAL 536 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 AR P+ S+ LN + K + IS + H A+ D+ +++++K Sbjct: 537 ARVLLPTLSKYKLNIVAK--ALNISLENHHRAVDDAEATAEIFVK 579 >gi|291530449|emb|CBK96034.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum 70/3] Length = 1605 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFDIETTGL N+RI EIGAV+L + +R F F+ P S +L GITD+ Sbjct: 592 IVFDIETTGLHPANERITEIGAVKLRNMEIVDR-FSTFVNPMMPIPS-NITELTGITDDM 649 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ S+F F N+ AHNAKFDV FI + R+ K +P ++DTLSI Sbjct: 650 VADAPTEDVAVSDFMAFCG--NSPVCAHNAKFDVSFIRSAATRMGKSFDNP--VVDTLSI 705 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ +N L+++ K + + H A+ D+ +L +Y+ ++ Sbjct: 706 AKAALKGIKNYKLDTIAKYF--KLGDFDHHRAVADAEMLCMIYMHIV 750 >gi|326803581|ref|YP_004321399.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus urinae ACS-120-V-Col10a] gi|326651581|gb|AEA01764.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus urinae ACS-120-V-Col10a] Length = 1437 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 59/156 (37%), Positives = 87/156 (55%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL + + IIEIGAV++ + F FL P G S +L GITD Sbjct: 422 VIFDVETTGLSAVYNTIIEIGAVKMHKGNVVGE-FSEFLNP-GHHLSSFTTELTGITDSM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + + +F DF Q +AHNA FDVGFI+A QR N P + +IDTL + Sbjct: 480 VANARPEPEVMQDFLDFC--QGTILVAHNASFDVGFIDAAYQR-NGLPTIENPVIDTLEL 536 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 AR +P ++ LN+L K + +++ H H A+ D+ Sbjct: 537 ARYLYPHLKSFRLNTLSKHFNVSLEHH--HRAIYDA 570 >gi|291557938|emb|CBL35055.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum V10Sc8a] Length = 1605 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFDIETTGL N+RI EIGAV+L + +R F F+ P S +L GITD+ Sbjct: 592 IVFDIETTGLHPANERITEIGAVKLRNMEIVDR-FSTFVNPMMPIPS-NITELTGITDDM 649 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ S+F F N+ AHNAKFDV FI + R+ K +P ++DTLSI Sbjct: 650 VADAPTEDVAVSDFMAFCG--NSPVCAHNAKFDVSFIRSAAARMEKSFDNP--VVDTLSI 705 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ +N L+++ K + + H A+ D+ +L +Y+ ++ Sbjct: 706 AKAALKGIKNYKLDTIAKYF--KLGDFDHHRAVADAEMLCMIYMHIV 750 >gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum SK46] gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum SK46] Length = 529 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL +KND IIEIGA++ KT TF F+ P G + L GIT Sbjct: 24 VVVDLETTGLKAKNDHIIEIGAIKTRG-GKTIGTFSSFIDP-GMEIPDHITSLTGITTAD 81 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P ++ ++F +F + + W+AHNAKFD+GF+ + D PS ++DTL++ Sbjct: 82 VETAPQLGTVITQFLEF--ARGSVWVAHNAKFDIGFLRQACTDLGLDWPSPS-VVDTLTL 138 Query: 130 ARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR S+ L+ L + G +R H AL D+ DV +M Sbjct: 139 ARRVLDRSQVGSFKLSQLARYVG--SPNRPAHRALDDAIATVDVLHYLM 185 >gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1410 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 9/165 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL S ND IIEIGAV++ D + TF+ F+ P S KL GITD+ Sbjct: 400 VVFDIETTGLSSINDSIIEIGAVKIKDCQIVD-TFETFVNPQIHI-SNFITKLTGITDDM 457 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K P + +F +F + + +AHNA FDV FI + + + + +P ++DTL + Sbjct: 458 VKRYPPIDEVLPKFLEFI--KGSTLVAHNANFDVTFIKTKAKNLGIEVDNP--VLDTLEL 513 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +R + + +N L+++ + G+++ + H A+ D+ +++++K Sbjct: 514 SRHMYENLKNYKLDTVAQHLGVSLENH--HRAVDDARATAEIFLK 556 >gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16] gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16] Length = 1430 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 97/168 (57%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + IIE+ AV++ + + T++ F P S ++L GITD+ Sbjct: 417 VVFDVETTGLSAVYNTIIELAAVKIKN-GEIIDTYESFADPK-EPLSATIIELTGITDDM 474 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 ++ P + + +F +F NA +AHNA FD+GF+N +++ + +P +IDTL Sbjct: 475 VQGAPEPAEVLKQFREFAG--NATLVAHNASFDIGFLNVGYKKLGFSEVTNP--VIDTLE 530 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R +P +N LN+LCK++ I + S H A+ D+ + + KM+ Sbjct: 531 LGRFLYPELKNHRLNTLCKKFDIELV--SHHRAIYDTQATAYLLWKMV 576 >gi|42525158|ref|NP_970538.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] gi|39577369|emb|CAE81192.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] Length = 217 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 8/181 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR I FD+ETTG D+I+EIGAV +D + F + P R P A ++GI+ Sbjct: 13 MRFIAFDLETTGTVPGVDQIVEIGAVRFID-GQPEAIFATLIDPL-RPIPPGASAVNGIS 70 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +K KP +I F +F E +AHNA FD F+ A++++ ++ I+D+ Sbjct: 71 DDMVKGKPLIDTILPAFAEFCGED--VLVAHNAPFDSQFLIADIKK-HETTAPRGVILDS 127 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 L IAR+ P N L +L + I S HR++ A H+ S + ++ +GG Sbjct: 128 LPIARKVFPGLPNYKLGTLVQHLKIPTSNFHRAEEDATYLGHMFSQMMKRISIGGQAPQV 187 Query: 184 G 184 G Sbjct: 188 G 188 >gi|218510298|ref|ZP_03508176.1| DNA polymerase III subunit epsilon [Rhizobium etli Brasil 5] Length = 72 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 39/72 (54%), Positives = 54/72 (75%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSS 78 DEFLKDK +F+ Sbjct: 61 DEFLKDKKAFAE 72 >gi|317500099|ref|ZP_07958334.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|316898584|gb|EFV20620.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] Length = 1520 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 9/165 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFDIETTG S D IIE+GAV++ D T+R F F+ P R E L ITDE Sbjct: 484 IVFDIETTGFSSIKDAIIEVGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDEM 541 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + +F +F + +AHNA FDVGFI + + D +DT+++ Sbjct: 542 VMDSPTIDVVLPQFLEFAG--DGVLVAHNAGFDVGFIEQNCRSLGLS--DEFVYLDTVAL 597 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 AR P+ S+ LN + K + IS + H A+ D+ +++++K Sbjct: 598 ARVLLPTLSKYKLNIVAK--ALNISLENHHRAVDDAEATAEIFVK 640 >gi|15805882|ref|NP_294580.1| DNA polymerase III subunit epsilon [Deinococcus radiodurans R1] gi|6458571|gb|AAF10431.1|AE001939_8 DNA polymerase III, epsilon subunit, putative [Deinococcus radiodurans R1] Length = 197 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 12/174 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNS----P-EALKL 62 +VFD+ETTG + I+EIGAV ++ + + T F+ + P S P +A ++ Sbjct: 24 VVFDLETTGFSPASAAIVEIGAVRIVG-GQIDETLKFETLVRPTRPDGSLLSIPWQAQRV 82 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI+DE ++ P+ + +F+DF + + +AHN FD GF+ A +R+ P R Sbjct: 83 HGISDEMVRRAPAIKDVLPDFFDFVD--GSAVVAHNVSFDGGFMRAGAERLGLS-WAPER 139 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + T+ ++RR P R ++L L +R G+ + +H + D + + Y++++ Sbjct: 140 ELCTMQLSRRAFPRERTHNLTVLAERLGLEFAPGGRHRSYGDVQVTAQAYLRLL 193 >gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM 12042] gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM 12042] Length = 1451 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 6/167 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+ETTGL D IIE GAV +++ + T Q+F+ P N+ + K + IT+E Sbjct: 400 VVYDLETTGLSCSFDHIIEFGAV-VIERGEIKETKQLFVKPPVPINAFISEKTN-ITNED 457 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + F+ + E DF ++ +AHNA FD F+N EL+RI PL + ++DTL + Sbjct: 458 VAQAKPFAEVAQELVDFIGDKV--LVAHNATFDYNFLNEELKRIGMAPLT-NPVVDTLDL 514 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR H R+ L ++ + Y IT H A D+ +L+ V++ M+ Sbjct: 515 ARALHSDRRSYRLGNIARHYRITYDEEVAHRADYDADVLASVFMLMI 561 >gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563] gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563] Length = 1439 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 105/185 (56%), Gaps = 11/185 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ + + + TF+ F+ P GR S + L GITD Sbjct: 424 VVFDVETTGLSAIYDNIIELAAVKMQNGNVID-TFEEFINP-GRPLSATIIDLTGITDAM 481 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + + + S+F ++ +A ++AHNA FD+GFI+ R + + +IDTL + Sbjct: 482 LANTRTEKEVISDFREWVG--DAIFVAHNASFDMGFIDTAYNRHGFEK-SHNAVIDTLEM 538 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSH---LLSDVYIKMMVGGSQINFGF 185 +R HP+ ++ LN+L KRY + + H A+ D+ L+ ++IK +I + Sbjct: 539 SRFLHPNLKSHRLNTLAKRYNVALEQH--HRAVYDAETTGALAWIFIKEAAADHEIFYHD 596 Query: 186 KTNED 190 + N+D Sbjct: 597 ELNKD 601 >gi|331087674|ref|ZP_08336601.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA] gi|330410366|gb|EGG89799.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA] Length = 1520 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 9/165 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFDIETTG S D IIE+GAV++ D T+R F F+ P R E L ITDE Sbjct: 484 IVFDIETTGFSSIKDAIIEVGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDEM 541 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + +F +F + +AHNA FDVGFI + + D +DT+++ Sbjct: 542 VMDSPTIDVVLPQFLEFAG--DGVLVAHNAGFDVGFIEQNCRSLGLS--DEFVYLDTVAL 597 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 AR P+ S+ LN + K + IS + H A+ D+ +++++K Sbjct: 598 ARVLLPTLSKYKLNIVAK--ALNISLENHHRAVDDAEATAEIFVK 640 >gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9] gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9] Length = 1406 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL + ND IIEIGAV++ + K TF+ F+ P +S KL GI + + Sbjct: 395 VFDIETTGLSNINDEIIEIGAVKIKE-GKIIDTFETFVNPKIPISS-FITKLTGIDESMV 452 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS I +F +F N+ +AHNA FDV FI ++ ++ N + + ++DTL ++ Sbjct: 453 KDAPSIEEILPKFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNV--NNTVLDTLELS 508 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + +N L++L + + + H H A+ D+ ++++IK + Sbjct: 509 RHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDARATAEIFIKTI 552 >gi|167464458|ref|ZP_02329547.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae BRL-230010] Length = 686 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 92/162 (56%), Gaps = 8/162 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL N++IIEI V++ D + R + F+ P+ K +L ITDE Sbjct: 422 VVFDIETTGLSVINNKIIEIAGVKMKDGKEIGR-YTTFIDPH-EKIPYNIQQLTNITDEM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P + +F +F +A +AHNA+FD+GFI A L+ I L P+ +DTL + Sbjct: 480 VQGAPDIAEELPKFVEFVG--DAVLVAHNARFDMGFIQANLKNIGMPEL-PNPSLDTLEL 536 Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLLS 168 AR PS +N LN+L ++ +++ HR+ + H+L+ Sbjct: 537 ARLLFPSLKNHRLNTLADKFKVSLENHHRAIDDTVALMHILN 578 >gi|167750041|ref|ZP_02422168.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702] gi|167657062|gb|EDS01192.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702] Length = 1605 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 91/167 (54%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFDIETTGL N+RI EIGAV+L + R F F+ P S +L GITD+ Sbjct: 592 IVFDIETTGLHPANERITEIGAVKLRNMEIVER-FSTFVNPMMPIPS-NITELTGITDDM 649 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ S+F F N+ AHNAKFDV FI + R+ K +P ++DTLSI Sbjct: 650 VADAPTEDVAVSDFMAFCG--NSPVCAHNAKFDVSFIRSAAARMEKSFDNP--VVDTLSI 705 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ +N L+++ K + + H A+ D+ +L +Y+ ++ Sbjct: 706 AKAALKGIKNYKLDTIAKYF--KLGDFDHHRAVADAEMLCMIYMHIV 750 >gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus CCSD1] gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus CCSD1] Length = 1407 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL + ND IIEIGAV++ + K TF+ F+ P +S KL GI + + Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKE-GKIIDTFETFVNPKIPISS-FITKLTGIDESMV 453 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS I +F +F N+ +AHNA FDV FI ++ ++ N + + ++DTL ++ Sbjct: 454 KDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLDTLELS 509 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + +N L++L + + + H H A+ D+ ++++IK + Sbjct: 510 RHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDAMATAEIFIKTI 553 >gi|297544667|ref|YP_003676969.1| DNA polymerase III subunit alpha [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1406 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL + ND IIEIGAV++ + K TF+ F+ P +S KL GI + + Sbjct: 395 VFDIETTGLSNINDEIIEIGAVKIKE-GKIIDTFETFVNPKIPISS-FITKLTGIDESMV 452 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS I +F +F N+ +AHNA FDV FI ++ ++ N + + ++DTL ++ Sbjct: 453 KDAPSIEEILPKFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNV--NNTVLDTLELS 508 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + +N L++L + + + H H A+ D+ ++++IK + Sbjct: 509 RHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDARATAEIFIKTI 552 >gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514] gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561] gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513] gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514] gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561] gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513] Length = 1407 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL + ND IIEIGAV++ + K TF+ F+ P +S KL GI + + Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKE-GKIIDTFETFVNPKIPISS-FITKLTGIDESMV 453 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS I +F +F N+ +AHNA FDV FI ++ ++ N + + ++DTL ++ Sbjct: 454 KDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLDTLELS 509 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + +N L++L + + + H H A+ D+ ++++IK + Sbjct: 510 RHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDAMATAEIFIKTI 553 >gi|237734614|ref|ZP_04565095.1| DNA-directed DNA polymerase [Mollicutes bacterium D7] gi|229382434|gb|EEO32525.1| DNA-directed DNA polymerase [Coprobacillus sp. D7] Length = 1440 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 6/167 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL +D I E GAV++ + +R Q+F+ P G+ S L IT++ Sbjct: 404 VSFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-LQMFVNP-GKSISSRITNLTSITNDM 461 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++++P+ ++ +FF++ +AHNA FD+GF+N L+R N P + IID+L++ Sbjct: 462 VRNEPTIDALLPRIIEFFDD--CILVAHNANFDIGFLNENLRR-NNMPEITNPIIDSLAL 518 Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P L ++C+ Y + H A D+ +L DV+ M+ Sbjct: 519 ARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMML 565 >gi|325263721|ref|ZP_08130454.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. D5] gi|324030759|gb|EGB92041.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. D5] Length = 1498 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 96/168 (57%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTG + D+IIEIGAV++++ +R F F+ P R + +L ITDE Sbjct: 462 IVFDLETTGFSAIKDKIIEIGAVKVVNGEIVDR-FSTFVNPK-RPIPFQITQLTSITDEM 519 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128 + P +I +F +F ++ +AHNA FDVGFI Q ++P + +DT++ Sbjct: 520 VMGYPDIETILPQFLEF--AKDGVLVAHNAGFDVGFIE---QNCRYQDIEPHFVYVDTVA 574 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P+ S+ LN + K GI++ + H A+ D+ S++++K + Sbjct: 575 MARVLLPTLSKYKLNVVAKALGISLENH--HRAVDDAAATSEIFVKFV 620 >gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 1421 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 99/168 (58%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 +VFDIETTG + D I EIGAV+++D +R Q+ N P+ ++L GI+++ Sbjct: 407 VVFDIETTGFSPQVDEITEIGAVKIVDGVIVDRFSQLV---NPMIKIPDRVVELTGISND 463 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 F+KD+P+ + +F DF +N+ +AHNA FD+ FI ++ + N ++DTLS Sbjct: 464 FVKDEPTIDKVIVDFNDFC--KNSVLVAHNAGFDISFIRRDMLKYNLSF--NFTVLDTLS 519 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR R +L +L K+ G+++ + H A+ D+ ++V+IKM+ Sbjct: 520 LARAIIKDIKRFNLTALSKKLGVSLVN--AHRAVNDAEATAEVFIKML 565 >gi|268319259|ref|YP_003292915.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785] gi|262397634|emb|CAX66648.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785] Length = 1432 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + L ITDE Sbjct: 416 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 473 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F +F+ ++ HN +FDVGF+NA L+R + + ++DTL + Sbjct: 474 VGAADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEIT-QPVVDTLEV 530 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP +R+ L+SL K+Y + + H + Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 559 >gi|288574409|ref|ZP_06392766.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570150|gb|EFC91707.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 193 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 7/163 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL ++ DRI+EIGA+ S+T +FQ F+ P GR EA+ +HGITDE Sbjct: 11 VAIDVETTGLSNRWDRIVEIGAIRFTPGSET-ESFQTFVSP-GRPIPSEAVAIHGITDEM 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P S F ++ + HN FD+GF++A ++ I K + + DT + Sbjct: 69 VEGAPGLSEASIALASFLKDEE-PMVFHNPSFDLGFLDANMRAI-KGSWNVMPVFDTCGL 126 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 AR+ P + L +L + +G +S H AL D + ++ Sbjct: 127 ARKAFPGIKGYSLVALARHFG--LSGGGHHRALEDCRYSASLF 167 >gi|167756906|ref|ZP_02429033.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402] gi|167703081|gb|EDS17660.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402] Length = 1445 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 6/167 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL +D I E GAV++ + +R Q+F+ P G+ S L IT++ Sbjct: 409 VSFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-LQMFVNP-GKSISSRITNLTSITNDM 466 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++++P+ ++ +FF++ +AHNA FD+GF+N L+R N P + IID+L++ Sbjct: 467 VRNEPTIDALLPRIIEFFDD--CILVAHNANFDIGFLNENLRR-NNMPEITNPIIDSLAL 523 Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P L ++C+ Y + H A D+ +L DV+ M+ Sbjct: 524 ARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMML 570 >gi|42519364|ref|NP_965294.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533] gi|41583652|gb|AAS09260.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533] Length = 1432 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + L ITDE Sbjct: 416 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 473 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F +F+ ++ HN +FDVGF+NA L+R + + ++DTL + Sbjct: 474 VGAADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEIT-QPVVDTLEV 530 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP +R+ L+SL K+Y + + H + Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 559 >gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2] gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2] Length = 1441 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ D +R F+ F P+ S + L GITD+ Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKIHDGEIIDR-FESFANPH-HPLSATTINLTGITDDL 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P + +F ++ +A +AHNA FD+GF+N +++ + +IDTL + Sbjct: 485 VENAPEVEEVLKKFHEWAG--DAVLVAHNASFDMGFLNVGYKKMGIGKAS-NPVIDTLEL 541 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR +P +N LN+L K++ + ++ H A+ D+ + +KM+ Sbjct: 542 ARFLYPDMKNHRLNTLAKKFDVELTQH--HRAIYDAEATGYLLLKML 586 >gi|227890229|ref|ZP_04008034.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227849231|gb|EEJ59317.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 1432 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + L ITDE Sbjct: 416 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 473 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F +F+ ++ HN +FDVGF+NA L+R + + ++DTL + Sbjct: 474 VGAADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEIT-QPVVDTLEV 530 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP +R+ L+SL K+Y + + H + Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 559 >gi|322382351|ref|ZP_08056258.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153704|gb|EFX46079.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 1437 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 8/170 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I+ + +VFDIETTGL N++IIEI V++ D + R + F+ P+ K + Sbjct: 416 IKLKEATYVVFDIETTGLSVINNKIIEIAGVKMKDGKEIGR-YTTFIDPH-EKIPYNIQQ 473 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE ++ P + +F +F +A +AHNA+FD+GFI A L+ I L P+ Sbjct: 474 LTNITDEMVQGAPDIAEELPKFVEFVG--DAVLVAHNARFDMGFIQANLKNIGMPEL-PN 530 Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLLS 168 +DTL +AR PS +N LN+L ++ +++ HR+ + H+L+ Sbjct: 531 PSLDTLELARLLFPSLKNHRLNTLADKFKVSLENHHRAIDDTVALMHILN 580 >gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1] gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1] Length = 1375 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + IIE+ AV++ D +R F+ F P+ S + L GITD+ Sbjct: 426 VVFDVETTGLSAMYNTIIELAAVKIRDGEIIDR-FESFANPH-HPLSATTINLTGITDDM 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P + F D+ +A +AHNA FD+GF+N + D + + +IDTL + Sbjct: 484 VEGAPEVAEALKAFKDWAG--DAVLVAHNASFDMGFLNVGYGKAGLDKAE-NPVIDTLEL 540 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR +P +N LN+L K++ + ++ H A+ D+ + +KM+ Sbjct: 541 ARLLYPEMKNHRLNTLAKKFDVELTQH--HRAIYDAEATGYLLLKML 585 >gi|310658999|ref|YP_003936720.1| DNA polymerase III polc [Clostridium sticklandii DSM 519] gi|308825777|emb|CBH21815.1| DNA polymerase III PolC [Clostridium sticklandii] Length = 1417 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 124/230 (53%), Gaps = 34/230 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGIT 66 +VFDIETTG + +D I EIGAV++ + + +F + P + P LK L GIT Sbjct: 407 VVFDIETTGFSNTSDEITEIGAVKIRNKEIID-SFGELINP----HMPIPLKVQELTGIT 461 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-----NKDPLDPS 121 ++ +KDKPS + F +F ++ +AHN+ FD+GFI A+ +R+ NKD Sbjct: 462 NDLIKDKPSIDEVLPRFLEFVG--SSILVAHNSDFDMGFIRAKAKRLNLAFENKD----- 514 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGG 178 IDTL ++R P+ R+ LN + GI++ + H A+ D+ + V+IK M+ Sbjct: 515 --IDTLKLSRILLPNLKRHKLNLITNHLGISLENH--HRAVDDAKATALVFIKFMEMLID 570 Query: 179 SQINFGFKTNEDRFFKEEKKTVPN--ISLLKRD----KPLFTRITKEELD 222 IN F+ D+ K + K++P+ I+++ RD K L+ I+ +D Sbjct: 571 KDIN-TFEMVNDKLGKLDYKSIPSNHITIIARDYTGLKNLYKLISASHID 619 >gi|116492651|ref|YP_804386.1| DNA polymerase III PolC [Pediococcus pentosaceus ATCC 25745] gi|122265885|sp|Q03FS8|DPO3_PEDPA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116102801|gb|ABJ67944.1| DNA polymerase III catalytic subunit, PolC type [Pediococcus pentosaceus ATCC 25745] Length = 1437 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 96/158 (60%), Gaps = 8/158 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++FD+ETTGL + D++IE+ AV++ + + ++ F+ F+ P G S + L ITD Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDQ-FEEFIDP-GFPLSETTINLTSITD 476 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S +F++F +F+ ++A + HN FD+GF+N R + + + IIDTL Sbjct: 477 EMVRGSMSEKEVFTKFREFY--EDAIIVGHNVTFDIGFMNTGYLRHGMEEIK-NPIIDTL 533 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 ++AR +P+ + LN+L K++G+ + H H A+ DS Sbjct: 534 TLARFLYPTLKGYRLNTLAKKFGVALEHH--HRAIYDS 569 >gi|254479461|ref|ZP_05092788.1| DNA polymerase III, alpha subunit, Gram-positive type [Carboxydibrachium pacificum DSM 12653] gi|214034604|gb|EEB75351.1| DNA polymerase III, alpha subunit, Gram-positive type [Carboxydibrachium pacificum DSM 12653] Length = 1375 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 97/167 (58%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL + ND IIEIGAV++ + K TF+ F+ P +S KL GI + Sbjct: 389 VVFDIETTGLSNINDEIIEIGAVKIKN-KKIVDTFETFVNPQIPISS-FITKLTGIDESM 446 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P + +F +F + A +AHNA FDV FI ++ +++ + ++DTL + Sbjct: 447 VKDAPLIEEVLPKFLEF--AKGAVLVAHNANFDVSFIKSKAKKLGLTV--ENTVLDTLEL 502 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + +N L++L + + + + H H A+ D+ ++++IKM+ Sbjct: 503 SRHLYQDLKNYKLDTLAEFFEVKLLHH--HRAVEDAKATAEIFIKML 547 >gi|312865553|ref|ZP_07725780.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus downei F0415] gi|311099071|gb|EFQ57288.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus downei F0415] Length = 1468 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 81/146 (55%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + ++ F F+ P G S L GITD Sbjct: 431 VVFDVETTGLSAVNNSLIQIAASKMHKGNIIDQ-FDEFINP-GHPLSQFTTDLTGITDNH 488 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LKD + EF +F Q+ +AHNA FDVGF+NA +R + PL +IDTL Sbjct: 489 LKDAKPLLQVLEEFQEFC--QDTVLVAHNATFDVGFMNANYER-HDLPLISQPVIDTLEF 545 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ + + H Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALDH 571 >gi|20807845|ref|NP_623016.1| DNA polymerase III PolC [Thermoanaerobacter tengcongensis MB4] gi|24418364|sp|Q8RA32|DPO3_THETN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|20516408|gb|AAM24620.1| DNA polymerase III alpha subunit, the Gram-positive type [Thermoanaerobacter tengcongensis MB4] Length = 1401 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 97/167 (58%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL + ND IIEIGAV++ + K TF+ F+ P +S KL GI + Sbjct: 389 VVFDIETTGLSNINDEIIEIGAVKIKN-KKIVDTFETFVNPQIPISS-FITKLTGIDESM 446 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P + +F +F + A +AHNA FDV FI ++ +++ + ++DTL + Sbjct: 447 VKDAPLIEEVLPKFLEF--AKGAVLVAHNANFDVSFIKSKAKKLGLTV--ENTVLDTLEL 502 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + +N L++L + + + + H H A+ D+ ++++IKM+ Sbjct: 503 SRHLYQDLKNYKLDTLAEFFEVKLLHH--HRAVEDAKATAEIFIKML 547 >gi|332686699|ref|YP_004456473.1| DNA polymerase III subunit alpha [Melissococcus plutonius ATCC 35311] gi|332370708|dbj|BAK21664.1| DNA polymerase III alpha subunit [Melissococcus plutonius ATCC 35311] Length = 1450 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 90/156 (57%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ + + TF+ F+ P G S + L GIT+E Sbjct: 426 VVFDVETTGLSAVYDTIIELSAVKMHKGNVID-TFEQFINP-GHPLSQTTIHLTGITNEM 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D S + + F F +N +AHNA FD+GF+N ++ K P + +IDTL + Sbjct: 484 VSDAKSEKVVLNMFKKF--SENTILVAHNAAFDMGFLNTSYRKY-KIPEAENPVIDTLEL 540 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 AR +P+ ++ LN L K++G+ + H A+ DS Sbjct: 541 ARYLYPTLKSHRLNVLAKKFGVGLEQH--HRAIYDS 574 >gi|332298225|ref|YP_004440147.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM 12168] gi|332181328|gb|AEE17016.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM 12168] Length = 186 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 8/169 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTGL + +R+IEIGA+ D + + + + P G+ P A ++ ITD+ + Sbjct: 25 AFDTETTGLKPEYERLIEIGAIRF-DKNGIIARYDILINP-GKPIPPGASAINNITDDMV 82 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P S+ +F F +++ +AHNA FD+ F+N EL+R +PL + DT+ +A Sbjct: 83 RNCPLIESVLPDFLTFV--RDSVLVAHNAGFDLSFVNKELERSGFNPLK-NNAADTVHLA 139 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 R + P N L SL +GI + R+ H A D+ + +V+++ + G Sbjct: 140 RSRFPQLPNHKLQSLAAYFGIDV--RNAHRAEDDARVCMEVFLRCLNAG 186 >gi|307264910|ref|ZP_07546472.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306920168|gb|EFN50380.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 1407 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL + ND IIEIGAV++ + K TF+ F+ P +S KL GI + + Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKE-GKIIDTFETFVNPKIPISS-FITKLTGIDESIV 453 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS I F +F N+ +AHNA FDV FI ++ ++ N + + ++DTL ++ Sbjct: 454 KDAPSIEEILPNFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLDTLELS 509 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + +N L++L + + + H H A+ D+ ++++IK + Sbjct: 510 RHLYKDLKNYKLDTLSEHLQVKLEHH--HRAVDDARATAEIFIKTI 553 >gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW 200] gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW 200] Length = 1407 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL + ND IIEIGAV++ + K TF+ F+ P +S KL GI + + Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKE-GKIIDTFETFVNPKIPISS-FITKLTGIDESMV 453 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS I +F +F N+ +AHNA FDV FI ++ ++ N + + ++DTL ++ Sbjct: 454 KDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLDTLELS 509 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + +N L++L + + H H A+ D+ ++++IK + Sbjct: 510 RHLYKDLKNYKLDTLADHLQVKLEHH--HRAVDDAMATAEIFIKTI 553 >gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1407 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL + ND IIEIGAV++ + K TF+ F+ P +S KL GI + + Sbjct: 396 VFDIETTGLSNINDEIIEIGAVKIKE-GKIIDTFETFVNPKIPISS-FITKLTGIDESMV 453 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD PS I +F +F N+ +AHNA FDV FI ++ ++ N + + ++DTL ++ Sbjct: 454 KDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLDTLELS 509 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + +N L++L + + H H A+ D+ ++++IK + Sbjct: 510 RHLYKDLKNYKLDTLADHLQVKLEHH--HRAVDDAMATAEIFIKTI 553 >gi|149201054|ref|ZP_01878029.1| putative exonuclease [Roseovarius sp. TM1035] gi|149145387|gb|EDM33413.1| putative exonuclease [Roseovarius sp. TM1035] Length = 688 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 6/168 (3%) Query: 10 IVFDIETTGLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL + D I++I + +++ +F + + P GR P + ++H I+D Sbjct: 495 VVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNP-GRPIPPASTRVHHISD 553 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++D P F DF Q A +AHNA FD+ F+ + + I + +P + Sbjct: 554 DMVQDAPDIIEAGRRFHDFC--QGAVLVAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVLM 611 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 S H S ++ L++LC+R+GITI ++H A+ D+ ++V+++M+ Sbjct: 612 SAGLFDH-SGQHTLDALCERFGITIPPEARHTAMGDTVATAEVFVRML 658 >gi|329667117|gb|AEB93065.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026] Length = 1432 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + L ITDE Sbjct: 416 VIFDVETTGLSSVYDTIIEIGAVKMKNGEVLER-FDEFINPH-HPLSDTTINLTSITDEM 473 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F +F+ ++ HN +FDVGF+NA L+R + + ++DTL + Sbjct: 474 VGVADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEIT-QPVVDTLEV 530 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSK 157 +R HP +R+ L+SL K+Y + + H + Sbjct: 531 SRLLHPEQTRHTLDSLAKKYNVVLEHHHR 559 >gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516] gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516] Length = 1421 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTGL + ++I EIGAV+++D + Q+ N PE + +L IT+E Sbjct: 403 VVFDIETTGLSNATEKITEIGAVKIVDNQIVDEFNQLI---NPEIPIPEKITELTSITNE 459 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + EF F + IAHNA FD+GFI + +P+ IDTL+ Sbjct: 460 MVKDMPKIEEVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCLDLRINPI--RTYIDTLA 515 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N L++L K+Y + + + H A D+ +V+I M+ Sbjct: 516 FARALEPHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMV 561 >gi|170761721|ref|YP_001787734.1| DNA polymerase III PolC [Clostridium botulinum A3 str. Loch Maree] gi|169408710|gb|ACA57121.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A3 str. Loch Maree] Length = 1432 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 9/165 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG +KND+IIEIGAV+ ++ K F F+ P GR + +L ITD+ Sbjct: 419 VVFDLETTGFSNKNDKIIEIGAVK-IEKGKIVDRFSEFVNP-GRSIPDKITELTSITDDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++DK + I F DF ++ +AHNA FDV FIN + + + + ++DT+++ Sbjct: 477 VQDKETIDKILPRFIDFIG--DSVVVAHNAAFDVSFINKNCKDLKIEF--ENSVMDTVTL 532 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 533 SRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|15835437|ref|NP_297196.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270285617|ref|ZP_06195011.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270289627|ref|ZP_06195929.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss] gi|301337013|ref|ZP_07225215.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14] gi|8163328|gb|AAF73606.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum Nigg] Length = 250 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 6/163 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD K DR+IE A+ + + + + + P R S E+ K+H I+D Sbjct: 10 VCLDCETTGLDVKKDRVIEFAAIRF-TFDEVIDSVEFLIHPE-RAVSAESQKIHKISDAM 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128 LKDKP FS +FS FF E++ + H+ FD+ ++ E +R+ + L +IDTL Sbjct: 68 LKDKPKFSEVFSTIKGFFKERDY-IVGHHVGFDLQVLSQESERLGETLLPKQHYVIDTLR 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +A+ S N L +L + + + H+ H A+ D + V+ Sbjct: 127 LAKEYGDSPNNSLEALARHF--NVPHQGNHRAMKDVEMNVKVF 167 >gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna ACS-171-V-Col3] gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna ACS-171-V-Col3] Length = 1421 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 11/181 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTGL + ++I EIGAV+++D + Q+ N PE + +L IT+E Sbjct: 403 VVFDIETTGLSNATEKITEIGAVKIVDNKIVDEFNQLI---NPEIPIPEKITELTSITNE 459 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P ++ EF F + IAHNA FD+GFI + +P+ IDTL+ Sbjct: 460 MVKDMPKIDAVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCIDLGINPV--RTYIDTLA 515 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR +N L++L K+Y + + + H A D+ +V+I M+ Q F F Sbjct: 516 FARALESHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMVNNLEQRGFKFDI 573 Query: 188 N 188 N Sbjct: 574 N 574 >gi|288904428|ref|YP_003429649.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34] gi|306830461|ref|ZP_07463631.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977425|ref|YP_004287141.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731153|emb|CBI12701.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34] gi|304427486|gb|EFM30588.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177353|emb|CBZ47397.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 1464 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 6/154 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I N+ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 419 IELNEATYVVFDVETTGLSAVNNELIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTE 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD +++ + F DF Q+ +AHNA FDVGF+NA +R + P+ Sbjct: 477 LTGITDNHVRNAKPIEEVLQMFQDFC--QDTVLVAHNATFDVGFMNANYER-HGMPIITQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154 +IDTL AR +P R+ L L KR+ +++ H Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEH 567 >gi|307690728|ref|ZP_07633174.1| DNA polymerase III PolC [Clostridium cellulovorans 743B] Length = 1439 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 96/166 (57%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 +VFDIETTG S+NDRIIEIGAV++ + + F VF+ P +K+ P E +L GI + Sbjct: 427 VVFDIETTGFSSQNDRIIEIGAVKVKNGEIIDE-FSVFVNP--QKDIPLEITELTGIDNY 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + + EF+DF + + +AHNA FD FI ++ D I+DT+ Sbjct: 484 MVKDAKTIDIVIKEFYDFVD--GSILVAHNAAFDTSFIKK--NYLDNDLEFNYPIMDTIP 539 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + +P+ ++ LN +CK GIT+ + H A+ D+ + V++K Sbjct: 540 LCKYLYPALNKYKLNVICKYLGITLLNH--HRAVDDAKATAMVFLK 583 >gi|224540943|ref|ZP_03681482.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM 15897] gi|224526094|gb|EEF95199.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM 15897] Length = 1444 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 8/187 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ N + + FD+ETTGL +D I EIGAV++ + + R Q F+ + + S + + Sbjct: 397 LKLNDLTYVSFDLETTGLSQIDDYITEIGAVKIKNGLEVGR-LQTFI-KSPKPISKKITE 454 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L IT+E +++ P+ +FF + IAHN +FD+G ++ L+R+ K P+ + Sbjct: 455 LTSITNEDIRNAPTIEEFMPRLMEFFGDD--LLIAHNGRFDIGMLDKALERMGKSPIS-N 511 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 IDTL ++RR P R+ L ++C+ Y I + H A D+ +LS + M+ Sbjct: 512 PWIDTLPLSRRLIPLQRSYRLGAVCRFYHIPYDTEAAHRADYDAEVLSHSFNVML--QDL 569 Query: 181 INFGFKT 187 I GFKT Sbjct: 570 IKKGFKT 576 >gi|304439997|ref|ZP_07399890.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371489|gb|EFM25102.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640] Length = 1403 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 101/176 (57%), Gaps = 10/176 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIE+TGL +D I EIGAV++ D +R F F+ P R + ++L IT+E Sbjct: 394 VVFDIESTGLSPASDMITEIGAVKIEDGVIVDR-FSRFVNPM-RPIPEKVVELTRITNEM 451 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P + +F +F +A +AHNA+FD FI ++ ++ P ++DTL + Sbjct: 452 VANEPPIEVVIKDFVEFIG--DATLVAHNAEFDTAFIRRDMDKVGLKFDFP--VLDTLYL 507 Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINF 183 +R + R +L+++CK+ G+ + H A+ D+ ++ +IKMM +GGS +F Sbjct: 508 SRAILNDLKRFNLSAICKKLGVNL--EGAHRAVNDAEATAEAFIKMMKLGGSPKSF 561 >gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus TM300] gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus carnosus subsp. carnosus TM300] Length = 1437 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 97/167 (58%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ R S L I+D+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVHDGEIIDK-FERFSNPHERL-SDTIKNLTHISDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + +EF ++ +A ++AHNA FD+GFI+ +R + +IDTL + Sbjct: 481 LVDAPEIDDVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERAGLGNY-TNGVIDTLEL 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 538 SRTINTEFGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKML 582 >gi|281202348|gb|EFA76553.1| DNA polymerase III [Polysphondylium pallidum PN500] Length = 725 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 95/170 (55%), Gaps = 7/170 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FD+ET+G +D IIEIGAVEL++ +T TFQ + P + + P A ++H +++ Sbjct: 320 RVVCFDLETSGF-GPDDSIIEIGAVELINGCRTGLTFQSYAKPKTQIH-PAAEQIHQLSN 377 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDT 126 L+D P + S F DF + + +AHN FD + EL R +K P D + + T Sbjct: 378 FLLQDAPPIEFVLSSFMDFVGD--SILVAHNLAFDRRMLIQELVR-SKTPFDINHKCFCT 434 Query: 127 LSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMM 175 + R+ + S L+S+ ++ I + R HGAL+DS +L+ VY ++ Sbjct: 435 MRYFRKMYKDSNYSLDSISQQLKINKLLLRRTHGALVDSEILAIVYKHLL 484 >gi|302874658|ref|YP_003843291.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B] gi|302577515|gb|ADL51527.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B] Length = 1443 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 96/166 (57%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 +VFDIETTG S+NDRIIEIGAV++ + + F VF+ P +K+ P E +L GI + Sbjct: 431 VVFDIETTGFSSQNDRIIEIGAVKVKNGEIIDE-FSVFVNP--QKDIPLEITELTGIDNY 487 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + + EF+DF + + +AHNA FD FI ++ D I+DT+ Sbjct: 488 MVKDAKTIDIVIKEFYDFVD--GSILVAHNAAFDTSFIKK--NYLDNDLEFNYPIMDTIP 543 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + +P+ ++ LN +CK GIT+ + H A+ D+ + V++K Sbjct: 544 LCKYLYPALNKYKLNVICKYLGITLLNH--HRAVDDAKATAMVFLK 587 >gi|254974851|ref|ZP_05271323.1| DNA polymerase III PolC-type [Clostridium difficile QCD-66c26] gi|255313978|ref|ZP_05355561.1| DNA polymerase III PolC-type [Clostridium difficile QCD-76w55] gi|255516658|ref|ZP_05384334.1| DNA polymerase III PolC-type [Clostridium difficile QCD-97b34] gi|255649757|ref|ZP_05396659.1| DNA polymerase III PolC-type [Clostridium difficile QCD-37x79] gi|260682913|ref|YP_003214198.1| DNA polymerase III PolC-type [Clostridium difficile CD196] gi|260686511|ref|YP_003217644.1| DNA polymerase III PolC-type [Clostridium difficile R20291] gi|260209076|emb|CBA62219.1| DNA polymerase III PolC-type [Clostridium difficile CD196] gi|260212527|emb|CBE03476.1| DNA polymerase III PolC-type [Clostridium difficile R20291] Length = 1432 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 90/150 (60%), Gaps = 9/150 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG + ND+I EIGAV++ ++ +R F + P + S + +L GIT+E Sbjct: 419 VVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNEL 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KDKP+ I +F +F ++ +AHNA+FD GFI+ + + + L ++ +DTL + Sbjct: 477 IKDKPTIEEILPKFMEFVG--DSVLVAHNAEFDTGFISQKCRE--QGLLYNNKKVDTLML 532 Query: 130 ARRKHPS-SRNDLNSLCKRYGITI--SHRS 156 AR P+ R+ LN + K GI + HR+ Sbjct: 533 ARVMLPNLKRHRLNVVAKELGIPLLNHHRA 562 >gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 1438 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 99/168 (58%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ R + E +K L I+D+ Sbjct: 423 VVFDVETTGLSNQYDKIIELAAVKVKDGEIIDK-FERFSNPHERLS--ETIKNLTHISDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF + +A ++AHNA FD+GFI+ + + + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKSWVG--DAIFVAHNASFDMGFIDTGYEHVGIGA-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYMFIKML 582 >gi|296451302|ref|ZP_06893042.1| DNA polymerase III PolC [Clostridium difficile NAP08] gi|296880346|ref|ZP_06904309.1| DNA polymerase III PolC [Clostridium difficile NAP07] gi|296259908|gb|EFH06763.1| DNA polymerase III PolC [Clostridium difficile NAP08] gi|296428587|gb|EFH14471.1| DNA polymerase III PolC [Clostridium difficile NAP07] Length = 1432 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 9/150 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG + ND+I EIGAV++ ++ +R F + P + S + +L GIT+E Sbjct: 419 VVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNEL 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KDKP+ + +F +F ++ +AHNA+FD GFI+ + + + L ++ +DTL + Sbjct: 477 IKDKPTIEEVLPKFMEFVG--DSVLVAHNAEFDTGFISQKCRE--QGLLYNNKKVDTLML 532 Query: 130 ARRKHPS-SRNDLNSLCKRYGITI--SHRS 156 AR P+ R+ LN + K GI + HR+ Sbjct: 533 ARVMLPNLKRHRLNVVAKELGIPLLNHHRA 562 >gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] Length = 1228 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG +S NDRIIEIGAV +++ + TF F+ P R + +L ITD+ Sbjct: 203 VVFDIETTGFNSVNDRIIEIGAVRVVE-GEIKETFSEFVNPE-RPIPYKITQLTTITDDM 260 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD + I +F F + + +AHNA FD GFI +R+N P D + ++DTL + Sbjct: 261 VKDAGTIEEILPQFLKFC--EGSVLVAHNAGFDTGFIRENAKRLNL-PYDHT-VVDTLGL 316 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR + L+++CK I + + H A+ D+ ++++ + Sbjct: 317 ARCLMGHLGKFTLDNICKHLNIIL--ETHHRAVDDATATGKIFVEFI 361 >gi|255655317|ref|ZP_05400726.1| DNA polymerase III PolC-type [Clostridium difficile QCD-23m63] Length = 1432 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 9/150 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG + ND+I EIGAV++ ++ +R F + P + S + +L GIT+E Sbjct: 419 VVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNEL 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KDKP+ + +F +F ++ +AHNA+FD GFI+ + + + L ++ +DTL + Sbjct: 477 IKDKPTIEEVLPKFMEFVG--DSVLVAHNAEFDTGFISQKCRE--QGLLYNNKKVDTLML 532 Query: 130 ARRKHPS-SRNDLNSLCKRYGITI--SHRS 156 AR P+ R+ LN + K GI + HR+ Sbjct: 533 ARVMLPNLKRHRLNVVAKELGIPLLNHHRA 562 >gi|330833568|ref|YP_004402393.1| DNA polymerase III PolC [Streptococcus suis ST3] gi|329307791|gb|AEB82207.1| DNA polymerase III PolC [Streptococcus suis ST3] Length = 1463 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + N+ +I+I A ++ K N F F+ P G S L GITD Sbjct: 426 VVFDVETTGLSAVNNALIQIAASKM---HKGNIIAEFDEFIDP-GHPLSQFTTDLTGITD 481 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ + EF DF Q++ +AHNA FDVGF+N +R P+ +IDTL Sbjct: 482 EHVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTL 538 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 539 EFARNLYPDFKRHGLGPLTKRFGVALEH 566 >gi|146319608|ref|YP_001199320.1| DNA polymerase III PolC [Streptococcus suis 05ZYH33] gi|146321806|ref|YP_001201517.1| DNA polymerase III PolC [Streptococcus suis 98HAH33] gi|253752606|ref|YP_003025747.1| DNA polymerase III PolC-type [Streptococcus suis SC84] gi|253754432|ref|YP_003027573.1| DNA polymerase III PolC-type [Streptococcus suis P1/7] gi|253756365|ref|YP_003029505.1| DNA polymerase III PolC-type [Streptococcus suis BM407] gi|166217454|sp|A4W428|DPO3_STRS2 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|166217456|sp|A4VXT1|DPO3_STRSY RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|145690414|gb|ABP90920.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus suis 05ZYH33] gi|145692612|gb|ABP93117.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus suis 98HAH33] gi|251816895|emb|CAZ52544.1| DNA polymerase III PolC-type [Streptococcus suis SC84] gi|251818829|emb|CAZ56672.1| DNA polymerase III PolC-type [Streptococcus suis BM407] gi|251820678|emb|CAR47440.1| DNA polymerase III PolC-type [Streptococcus suis P1/7] gi|292559223|gb|ADE32224.1| DNA polymerase III, alpha subunit [Streptococcus suis GZ1] gi|319759021|gb|ADV70963.1| DNA polymerase III PolC [Streptococcus suis JS14] Length = 1463 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + N+ +I+I A ++ K N F F+ P G S L GITD Sbjct: 426 VVFDVETTGLSAVNNALIQIAASKM---HKGNIIAEFDEFIDP-GHPLSQFTTDLTGITD 481 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ + EF DF Q++ +AHNA FDVGF+N +R P+ +IDTL Sbjct: 482 EHVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTL 538 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 539 EFARNLYPDFKRHGLGPLTKRFGVALEH 566 >gi|302024523|ref|ZP_07249734.1| DNA polymerase III PolC [Streptococcus suis 05HAS68] Length = 1463 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + N+ +I+I A ++ K N F F+ P G S L GITD Sbjct: 426 VVFDVETTGLSAVNNALIQIAASKM---HKGNIIAEFDEFIDP-GHPLSQFTTDLTGITD 481 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ + EF DF Q++ +AHNA FDVGF+N +R P+ +IDTL Sbjct: 482 EHVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTL 538 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 539 EFARNLYPDFKRHGLGPLTKRFGVALEH 566 >gi|223933907|ref|ZP_03625870.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591] gi|223897433|gb|EEF63831.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591] Length = 1463 Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + N+ +I+I A ++ K N F F+ P G S L GITD Sbjct: 426 VVFDVETTGLSAVNNALIQIAASKM---HKGNIIAEFDEFIDP-GHPLSQFTTDLTGITD 481 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ + EF DF Q++ +AHNA FDVGF+N +R P+ +IDTL Sbjct: 482 EHVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTL 538 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 539 EFARNLYPDFKRHGLGPLTKRFGVALEH 566 >gi|126698903|ref|YP_001087800.1| DNA polymerase III PolC-type [Clostridium difficile 630] gi|255100324|ref|ZP_05329301.1| DNA polymerase III PolC-type [Clostridium difficile QCD-63q42] gi|255306262|ref|ZP_05350434.1| DNA polymerase III PolC-type [Clostridium difficile ATCC 43255] gi|115250340|emb|CAJ68162.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile] Length = 1432 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 9/150 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG + ND+I EIGAV++ ++ +R F + P + S + +L GIT+E Sbjct: 419 VVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGITNEL 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KDKP+ + +F +F ++ +AHNA+FD GFI+ + + + L ++ +DTL + Sbjct: 477 IKDKPTIEEVLPKFMEFVG--DSVLVAHNAEFDTGFISQKCRE--QGLLYNNKKVDTLML 532 Query: 130 ARRKHPS-SRNDLNSLCKRYGITI--SHRS 156 AR P+ R+ LN + K GI + HR+ Sbjct: 533 ARVMLPNLKRHRLNVVAKELGIPLLNHHRA 562 >gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911] gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911] Length = 1440 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL + D IIE+ AV++ D +R F+ F P+ S + L GITD+ Sbjct: 426 IVFDVETTGLSAVYDTIIELAAVKIHDGEIIDR-FESFANPH-HPLSATTIDLTGITDDD 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P + F ++ QN +AHNA FD+GF+N +R + +IDTL + Sbjct: 484 VRNAPEVEEVLRRFKEW--SQNDILVAHNASFDMGFLNTGYKRYGLGKA-ANPVIDTLEL 540 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P +N LN+L K++ + ++ H A+ D+ + IKM+ Sbjct: 541 ARFLLPEMKNHRLNTLAKKFDVELTQH--HRAIYDAEATGYLLIKML 585 >gi|56475526|ref|YP_157115.1| exonuclease [Aromatoleum aromaticum EbN1] gi|56311569|emb|CAI06214.1| conserved hypothetical protein, possibly exonuclease [Aromatoleum aromaticum EbN1] Length = 642 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 20/173 (11%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSPEALKLHGITD 67 VFD ETTGLD SK D II+IGA +++ SK R +F+ + P R SPE++K+HGIT Sbjct: 454 VFDTETTGLDPSKGDEIIQIGATRIVN-SKLLRQESFEQLIDPE-RGVSPESVKIHGITP 511 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR----I 123 + L +P+ + + F F Q+ IAHNA FD+ F+ K+ + R + Sbjct: 512 DMLAGQPTIARVLPAFHAF--AQDTVLIAHNAAFDMRFLQL------KETMTGLRFDQPV 563 Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DTL ++ HP+ + L ++ +R +TI R H AL D+ + ++V +K++ Sbjct: 564 LDTLLLSAVVHPNQESHRLEAIAERLNLTIIGR--HTALGDAIVTAEVLLKLI 614 >gi|237737108|ref|ZP_04567589.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817] gi|229420970|gb|EEO36017.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817] Length = 1450 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 95/168 (56%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 IVFD+ET GL+S IIEIGAV+L +R Q+ N +K P+ ++ L IT E Sbjct: 425 IVFDLETMGLNSHEHEIIEIGAVKLRGNRIVDRFSQLV---NPQKPIPKKIQELTNITQE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P+ + +F +F +A +AHNA FD+GFI +++R+ P+ IIDTL Sbjct: 482 MVDNMPTIEEVLPKFMEFVG--DATMVAHNAAFDMGFIRRDVKRLLGYDYTPA-IIDTLQ 538 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR +P + L +L K G+++ S H A+ DS ++++I M Sbjct: 539 MARDLYPDLKGYGLKNLNKVLGLSL--ESHHRAVDDSQATANMFIIFM 584 >gi|170761478|ref|YP_001786710.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A3 str. Loch Maree] gi|169408467|gb|ACA56878.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A3 str. Loch Maree] Length = 855 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 94/168 (55%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E+TG+++ D I++I +++ + + +FQ FL P +K+ ++ +HG +D+F Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLVHGFSDQF 553 Query: 70 LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ + + +F +F ++ + HN FD+ +N+EL+R++ + DTL Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTLD 611 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR +PS N L +L K + +S H A+ D DV + M+ Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657 >gi|168179984|ref|ZP_02614648.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum NCTC 2916] gi|182669095|gb|EDT81071.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum NCTC 2916] Length = 855 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 94/168 (55%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E+TG+++ D I++I +++ + + +FQ FL P +K+ ++ +HG +D+F Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTP--KKSVGDSYLVHGFSDQF 553 Query: 70 LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ + + +F +F ++ + HN FD+ +N+EL+R++ + DTL Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVAFDISILNSELERLSLEKASFKTYYDTLD 611 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR +PS N L +L K + +S H A+ D DV + M+ Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657 >gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15] gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15] Length = 1450 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 8/165 (4%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N+ +VFD+ETTGL + D IIE+ AV++ +F F+ P G S + L G Sbjct: 421 NEATYVVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTG 478 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITDE ++ S + F +F + +AHNA FD+GF+N R P + +I Sbjct: 479 ITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEAANPVI 535 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 DTL +AR +P R L L K++G+++ HR+ + A HL Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580 >gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1] gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum reducens MI-1] Length = 1426 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 12/152 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 ++ D ETTG + D IIEIGAV+ L+ + R F + P +K P E KL GITDE Sbjct: 415 VIIDFETTGFSPQTDEIIEIGAVKYLNGEEVGR-FGTLVNP--KKEIPFEVTKLTGITDE 471 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127 +KD P + +F E A +AHNA FD+ F+ L++ + ++ +P+ IDTL Sbjct: 472 MVKDAPDGKEALTALSEFMGE--AVLVAHNASFDLSFLRVGLRKYLKQEVTNPA--IDTL 527 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITIS--HRS 156 +AR P+ +N LN+L K + I ++ HR+ Sbjct: 528 GVARVLFPNLKNHKLNTLVKEFKIELTNHHRA 559 >gi|85706434|ref|ZP_01037528.1| putative exonuclease [Roseovarius sp. 217] gi|85669207|gb|EAQ24074.1| putative exonuclease [Roseovarius sp. 217] Length = 688 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 6/168 (3%) Query: 10 IVFDIETTGLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL + D I++I + +++ F + + P GR P + ++H I+D Sbjct: 495 VVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGECFDMLVNP-GRAIPPASTRVHHISD 553 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ P F DF Q A +AHNA FD+ F+ + + I + +P + Sbjct: 554 EMVQGAPGIVEAGRRFHDFC--QGAVLVAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVLM 611 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 S H S ++ L++LC R+GITI ++H A+ D+ ++V+++M+ Sbjct: 612 SAGLFDH-SGQHTLDALCDRFGITIPPEARHTAMGDTVATAEVFVRML 658 >gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E980] gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E980] Length = 1450 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 8/165 (4%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N+ +VFD+ETTGL + D IIE+ AV++ +F F+ P G S + L G Sbjct: 421 NEATYVVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTG 478 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITDE ++ S + F +F + +AHNA FD+GF+N R P + +I Sbjct: 479 ITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEAANPVI 535 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 DTL +AR +P R L L K++G+++ HR+ + A HL Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580 >gi|154484062|ref|ZP_02026510.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC 27560] gi|149735104|gb|EDM50990.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC 27560] Length = 237 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/170 (39%), Positives = 90/170 (52%), Gaps = 15/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIET+G+ K D+IIEIGAV++ D K TF + P G K SP +L GITDE Sbjct: 6 VCVDIETSGIRVKWDKIIEIGAVKVRD-GKAVDTFSELINP-GLKLSPYITELTGITDEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127 LKDKP + F +F + + HN FD F+ NA Q++ D + IDTL Sbjct: 64 LKDKPFIEEVLPRFIEFAGDDVI--MGHNIMFDYSFLKQNAINQKLKFDKMG----IDTL 117 Query: 128 SIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IAR+ K SR L LC YG I+ + H A D+ + S +Y +M Sbjct: 118 KIARKTLKGLESRG-LEYLCNYYG--IADENHHRAFNDAEVTSKLYNVLM 164 >gi|310779125|ref|YP_003967458.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926] gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926] Length = 1442 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 11/164 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 +V+D+ET GL+S + IIEIGA++L ++ Q+ N K+ P ++ L GITD+ Sbjct: 416 VVYDLETMGLNSHENEIIEIGAIKLKGTRIVDKYSQLI---NPGKSIPSKIQELTGITDD 472 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127 +KD+PS + F +F +A +AHNA+FD+GF+ ++++ N PS +IDTL Sbjct: 473 MVKDEPSIEEVLPGFLEFAG--DATLVAHNARFDIGFLTRDVKKYTNIKDYKPS-VIDTL 529 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLS 168 AR P R L S+ K+ G+ + HR+ + +H+ + Sbjct: 530 QWARDLLPDLRGYGLKSVTKKLGVALENHHRAVDDSQATAHMFA 573 >gi|282890058|ref|ZP_06298591.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500064|gb|EFB42350.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 231 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 11/171 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + +D ETTG+ + D +IE+ + + NRTF+ + P G PEA +H IT Sbjct: 1 MKALYYDTETTGIKADRDYVIELAVYDPVG----NRTFERLINP-GVPIPPEATAIHHIT 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125 DE + + PSF I EF +F + + IAHN +FD+ F+ E +R N++ L P + +D Sbjct: 56 DEMVANAPSFGEIIEEFKEFCS-GDVVLIAHNNDQFDIHFLRNEFKRSNQE-LPPWKFLD 113 Query: 126 TLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL ARR ++ R+ L L YG I+ + H AL D +L V+ M+ Sbjct: 114 TLKWARRYRNDLPRHTLQFLRGIYG--IAENNAHRALDDVIVLHQVFSAML 162 >gi|160940984|ref|ZP_02088323.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613] gi|158436074|gb|EDP13841.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613] Length = 1565 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 101/173 (58%), Gaps = 18/173 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66 +VFDIETTG K ++IIEIGAV+++D T++ F F+ P + P + KL GI Sbjct: 543 VVFDIETTGFSPKKNKIIEIGAVKVVDGRITDK-FSTFVNP----DVPIPFDIEKLTGIN 597 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + P I +F +F +A +AHNA FDVGFI +++ P DP+ ++DT Sbjct: 598 DSMVLPYPKIDVILPQFLEFVG--DAVLVAHNASFDVGFIGHFAEKLEL-PFDPT-VLDT 653 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMM 175 ++IAR P+ +R L+++ K + IS ++ H A+ D+ +++ ++KM+ Sbjct: 654 VAIARLLLPNLNRFKLDTVAK--ALNISLQNHHRAVDDAGATAEIFAAFVKML 704 >gi|21702589|gb|AAM75986.1|AF481102_22 DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps] Length = 203 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 5/169 (2%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + R +V D ETTGL + R+ E+G VE+ T F ++ P R A +H + Sbjct: 2 QTRYVVLDTETTGLSPRYHRLAEVGCVEIACGRITGNFFHSYINPRQRMTR-GAQAVHRL 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 DEFL ++P+F +I F + HN FD+ F++A L P + Sbjct: 61 RDEFLAEQPTFRAIAQRLLFFLCRST--LVGHNLSFDLNFLDAGLATAGFMPAARYCHGV 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ ++ R L++ C R G+ R++HGAL D+ LL++ ++ Sbjct: 119 IDTMLHLAQRGRRRRFSLDACCDRLGVRRGDRARHGALEDAVLLAEAFV 167 >gi|226356768|ref|YP_002786508.1| DNA polymerase III subunit epsilon [Deinococcus deserti VCD115] gi|226318758|gb|ACO46754.1| putative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit) [Deinococcus deserti VCD115] Length = 202 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 22/182 (12%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLD------------YSKTNRTFQVFLCPNGRK 54 M +VFD+ETTGL + D I+EIGA+ +++ TN + + P Sbjct: 1 MNVVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPW--- 57 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 A ++HGI++E ++ P+ + EF +F + +AHN FD GF+ A+ +R+ Sbjct: 58 ---HAQRVHGISNEMVRSAPTIEEVLPEFLEFVGDSAV--VAHNVGFDCGFMRAQARRLG 112 Query: 115 KDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P+ T+ ++RR P R ++L L +R G+ + +H + D + + Y++ Sbjct: 113 MV-WAPAGEHCTVQLSRRAFPKERAHNLTVLAERLGLNFAPGGRHRSFGDVQVTAHAYVR 171 Query: 174 MM 175 ++ Sbjct: 172 LL 173 >gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733] gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12] gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium PC4.1] gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733] gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12] gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium PC4.1] Length = 1450 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 8/165 (4%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N+ +VFD+ETTGL + D IIE+ AV++ +F F+ P G S + L G Sbjct: 421 NEATYVVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTG 478 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITDE ++ S + F +F + +AHNA FD+GF+N R P + +I Sbjct: 479 ITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEATNPVI 535 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 DTL +AR +P R L L K++G+++ HR+ + A HL Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580 >gi|77414701|ref|ZP_00790833.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 515] gi|77159245|gb|EAO70424.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 515] Length = 1036 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD Sbjct: 431 VVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSAFTTELTGITDNH 488 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + EF +F Q +AHNA FDVGF+NA +R N PL +IDTL Sbjct: 489 VRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQPVIDTLEF 545 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ + + H Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH 571 >gi|168180697|ref|ZP_02615361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum NCTC 2916] gi|182668382|gb|EDT80361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum NCTC 2916] Length = 1432 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTG SKND+IIEIGAV+ ++ K F F+ P ++ P+ + +L ITD Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--KRTIPDKITELTSITDN 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DK + I F DF ++ +AHNA FDV FIN + + + + ++DT++ Sbjct: 476 MVDDKETIDKILPRFIDFIG--DSVVVAHNASFDVSFINKNCKDLKIEF--ENSVMDTVT 531 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++R P R+ LN + K GI++ + H A+ D+ +D+ +K Sbjct: 532 LSRFLFPELKRHKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|77412300|ref|ZP_00788615.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] gi|77161647|gb|EAO72643.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] Length = 1468 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD Sbjct: 431 VVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSAFTTELTGITDNH 488 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + EF +F Q +AHNA FDVGF+NA +R N PL +IDTL Sbjct: 489 VRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQPVIDTLEF 545 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ + + H Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH 571 >gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] Length = 1450 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 8/165 (4%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N+ +VFD+ETTGL + D IIE+ AV++ +F F+ P G S + L G Sbjct: 421 NEATYVVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTG 478 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITDE ++ S + F +F + +AHNA FD+GF+N R P + +I Sbjct: 479 ITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEATNPVI 535 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 DTL +AR +P R L L K++G+++ HR+ + A HL Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580 >gi|22538049|ref|NP_688900.1| DNA polymerase III PolC [Streptococcus agalactiae 2603V/R] gi|25011937|ref|NP_736332.1| DNA polymerase III PolC [Streptococcus agalactiae NEM316] gi|76798733|ref|ZP_00780952.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 18RS21] gi|54036993|sp|P63984|DPO3_STRA5 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|54040954|sp|P63983|DPO3_STRA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|22534952|gb|AAN00773.1|AE014277_21 DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 2603V/R] gi|24413479|emb|CAD47557.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae NEM316] gi|76585912|gb|EAO62451.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 18RS21] Length = 1468 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 77/146 (52%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ F F+ P G S +L GITD Sbjct: 431 VVFDVETTGLSAANNDLIQIAASKMFK-GNIIEQFDEFIDP-GHPLSAFTTELTGITDNH 488 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + EF +F Q +AHNA FDVGF+NA +R N PL +IDTL Sbjct: 489 VRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQPVIDTLEF 545 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ + + H Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH 571 >gi|332982461|ref|YP_004463902.1| DNA polymerase III catalytic subunit, PolC type [Mahella australiensis 50-1 BON] gi|332700139|gb|AEE97080.1| DNA polymerase III catalytic subunit, PolC type [Mahella australiensis 50-1 BON] Length = 1427 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 9/185 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTGL++ D+IIEIGAV + D K F F+ P+ P + L GITD+ Sbjct: 416 VVLDIETTGLNAGTDKIIEIGAVRIKD-GKYKDEFSSFINPH-VPIPPSIVNLTGITDDM 473 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P + F +F +A +AHNA+FD+GFI Q+ N +P ++DTL++ Sbjct: 474 VSNAPDEGDVLQRFMEFAG--DAVLVAHNAQFDMGFIRQHGQKYNLKFANP--VLDTLTL 529 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 AR+ ++ L++L I + + H A+ D+ +++ + M S++ F ++ Sbjct: 530 ARQLFKGLKHYKLDTLAHHLHIDMDNH--HRAVDDARTAAEILFRCMDKLSEMGCQFLSD 587 Query: 189 EDRFF 193 +R F Sbjct: 588 LNRVF 592 >gi|319745868|gb|EFV98158.1| DNA polymerase III PolC [Streptococcus agalactiae ATCC 13813] Length = 1468 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD Sbjct: 431 VVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSAFTTELTGITDNH 488 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + EF +F Q +AHNA FDVGF+NA +R N PL +IDTL Sbjct: 489 VRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQPVIDTLEF 545 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ + + H Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH 571 >gi|255070749|ref|XP_002507456.1| exonuclease and DNA helicase [Micromonas sp. RCC299] gi|226522731|gb|ACO68714.1| exonuclease and DNA helicase [Micromonas sp. RCC299] Length = 1473 Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 18/185 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL+ +RIIEI AV + D T++ + P P + L GIT+ Sbjct: 296 VVFDLETTGLNKDRNRIIEIAAVNVSD--PTHQPMSTLVNPGRFAVPPPVVALTGITNAM 353 Query: 70 LKDK--PSFSSIFSEFWDFFNEQNAE-------WIAHNAK-FDVGFINAELQRINKDPLD 119 + PSF F ++ +E AHNA+ FD GF+ AE +R+ ++ + Sbjct: 354 VSAPAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAEYRRLGRELPE 413 Query: 120 PSRIIDTLSIARRKH-----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R +DTL +AR+ P L SL +G+ + S H A D+ +L DV ++ Sbjct: 414 DWRFVDTLPLARKTLAKEAVPGGSYKLESLAAHFGVDTAGASAHRAEADARMLGDV-LQR 472 Query: 175 MVGGS 179 +VG S Sbjct: 473 LVGCS 477 >gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC 700633] gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC 700633] Length = 1441 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 92/158 (58%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ + ++ F+ F+ P G S ++L GITD+ Sbjct: 427 VVFDVETTGLSAIYDSIIELAAVKMHKGNVIDK-FEEFIDP-GHPLSATTIQLTGITDDM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--IIDTL 127 ++ S + + EF F ++ +AHNA FD+GF+N + K+ L+ + +IDTL Sbjct: 485 VRGSKSQAQVLKEFAAF--TKDTILVAHNASFDMGFLNTGYE---KEGLEKTTQPVIDTL 539 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R HP ++ LN+L KRY + + H A+ DS Sbjct: 540 ELSRLLHPHLKSHRLNTLAKRYNVALEQH--HRAVFDS 575 >gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella haemolysans ATCC 10379] gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella haemolysans ATCC 10379] Length = 1449 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 105/167 (62%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ DR+IEI AV++ + ++ + +F+ ++ P R S +L IT++ Sbjct: 430 VVFDVETTGLSAERDRLIEIAAVKVKNGAEID-SFESYINPQ-RPISELITRLTSITNDD 487 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P + + F+++ ++ + +AHNAKFD+GF++ +R+ + + + IDTL + Sbjct: 488 VKDAPLEKEVMTNFYNWLDKDDI-LVAHNAKFDLGFLDTCFERLGLENKNNAS-IDTLFV 545 Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R ++ + R+ L++L K Y + + H A+ D+ +++++KM+ Sbjct: 546 SRAENKEAKRHGLSNLAKLYKVRLVQH--HRAIYDTKATAEIFVKML 590 >gi|167766537|ref|ZP_02438590.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1] gi|167711660|gb|EDS22239.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1] Length = 1473 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG +S NDRIIEIGAV +++ + TF F+ P R + +L ITD+ Sbjct: 448 VVFDIETTGFNSVNDRIIEIGAVRVVE-GEIKETFSEFVNPE-RPIPYKITQLTTITDDM 505 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD + I +F F + +AHNA FD GFI +R+N P D + ++DTL + Sbjct: 506 VKDAGTIEEILPQFLKFC--AGSVLVAHNAGFDTGFIRENAKRLNL-PYDHT-VVDTLGL 561 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR + L+++CK I + + H A+ D+ ++++ + Sbjct: 562 ARCLMGHLGKFTLDNICKHLNIIL--ETHHRAVDDATATGKIFVEFI 606 >gi|291558576|emb|CBL37376.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing bacterium SSC/2] Length = 1470 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG +S NDRIIEIGAV +++ + TF F+ P R + +L ITD+ Sbjct: 445 VVFDIETTGFNSVNDRIIEIGAVRVVE-GEIKETFSEFVNPE-RPIPYKITQLTTITDDM 502 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD + I +F F + +AHNA FD GFI +R+N P D + ++DTL + Sbjct: 503 VKDAGTIEEILPQFLKFC--AGSVLVAHNAGFDTGFIRENAKRLNL-PYDHT-VVDTLGL 558 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR + L+++CK I + + H A+ D+ ++++ + Sbjct: 559 ARCLMGHLGKFTLDNICKHLNIIL--ETHHRAVDDATATGKIFVEFI 603 >gi|328868531|gb|EGG16909.1| DNA polymerase III [Dictyostelium fasciculatum] Length = 782 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 7/166 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I FD+ETTG S+ D IIE+GAVEL+D +T TFQ + P + PEA K+H + Sbjct: 401 RVICFDLETTGFGSE-DSIIEVGAVELIDGCRTGLTFQSYAKPKAPIH-PEAAKVHNLNA 458 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDT 126 L P + + F DF + A +AHN FD + E+ R +K P++ S + T Sbjct: 459 YLLSSAPPIEFVLASFMDFVGD--ALLVAHNLAFDHRMLIQEMMR-SKIPINRSKKCFCT 515 Query: 127 LSIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVY 171 + R+ +L+++ + I + R HGAL+DS +L+ VY Sbjct: 516 MKYYRKVIKDVSYNLDAISSQLKIDKLLLRRTHGALVDSEILAIVY 561 >gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium praevalens DSM 2228] Length = 1404 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 92/167 (55%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL+ IIEIGAV+ K F+ F+ P G + + ++ GI D Sbjct: 393 IVFDLETTGLNPSQHEIIEIGAVKYQGGKKIAE-FESFINP-GVRIPAKITEITGINDRM 450 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ P + ++F +F +AHNA FD GFI L+++ + D ++DTL + Sbjct: 451 VKNAPGLEKVINDFIEFAG--TGVLVAHNADFDYGFIRTALEKLEIEK-DDYTVLDTLGL 507 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R S+N LN+L K +G+ + + H AL D++ ++V K++ Sbjct: 508 SRAVVKDSKNHKLNTLAKYFGVDLENH--HRALDDANATAEVLAKLL 552 >gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386] gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC 33386] Length = 1421 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+FDIETTG D D+IIEIGAV+L + +R F F+ P E +KL ITD+ Sbjct: 400 IIFDIETTGFDPYKDKIIEIGAVKLKGRNIIDR-FSAFVNPE-VPIPEEIIKLTNITDDM 457 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD ++ F +F + +AHNAKFDVGF+ + +++ + L PS +IDTL Sbjct: 458 VKDAELIDTVLPRFLEFCG--DCTMVAHNAKFDVGFLTQKARQLELEFL-PS-VIDTLYW 513 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR R +L +L + I++ + H A+ D+ + ++IKM+ Sbjct: 514 ARVLITDLKRFNLKALANYFNISLDNH--HRAVDDAEATASIFIKML 558 >gi|171778812|ref|ZP_02919874.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282458|gb|EDT47882.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 1464 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 6/154 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I N+ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 419 IELNEATFVVFDVETTGLSAVNNDLIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTE 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD +++ + F DF Q+ +AHNA FDVGF+NA +R + P+ Sbjct: 477 LTGITDNHVRNAKPIEEVLQMFQDFC--QDTVLVAHNATFDVGFMNANYER-HGMPIITQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154 +IDTL AR +P R+ L L KR+ +++ H Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEH 567 >gi|295107656|emb|CBL05199.1| DNA polymerase III, alpha subunit (gram-positive type) [Gordonibacter pamelaeae 7-10-1-b] Length = 445 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 17/207 (8%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K + I FD+ETTGL DRI+EIGA+ D K R+F + P G + S EA +++ I Sbjct: 5 KSKFIAFDVETTGLSEYADRIVEIGAICFED-RKPMRSFSTLVNP-GVRISVEASRINHI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 ++E L + PS + + +F +F + N+ AHNA+FD+GF+ L+R+ Sbjct: 63 SNEMLGNAPSENQAYEQFVEFLGDALAGNSILCAHNARFDMGFLKNTLERLGYS--GTIN 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +DTLS++RR N +Y I + ++H A D+ + ++ K+ G Q Sbjct: 121 YVDTLSLSRRLISDLPNYKQPTVAQY-FNIQNNAEHRAYGDAEVCGMMFCKLASLGEQ-- 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRD 209 E++ +PN++ ++++ Sbjct: 178 -------RLALNREERGIPNLTDVEKE 197 >gi|218133709|ref|ZP_03462513.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC 43243] gi|217991084|gb|EEC57090.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC 43243] Length = 1403 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 19/173 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT- 66 + +VFDIETTG ++NDRIIEIGAV++ D +R F F+ P P K+ +T Sbjct: 372 KYVVFDIETTGFSAENDRIIEIGAVKIEDGEIIDR-FSTFVNP----EVPIPFKIEKLTS 426 Query: 67 --DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSR 122 D + P + EF +F + +AHNA+FD GFI A Q + D + Sbjct: 427 INDSMVMGAPKIEQVLPEFLEFC--EGCVVVAHNAEFDTGFIRNKAAKQGMTFD----NT 480 Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++DTL+IAR P N L++L K + + ++ S H A+ D+ + +++KM Sbjct: 481 VVDTLAIARFLVPRLHNFKLDTLTKHFNVVLT--SHHRAVDDAEATAGIFLKM 531 >gi|254519189|ref|ZP_05131245.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA] gi|226912938|gb|EEH98139.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA] Length = 1442 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFDIETTG +KND+IIEIGAV++ + TF F+ P R + +L GITDE Sbjct: 430 IVFDIETTGFSAKNDKIIEIGAVKIKGREVID-TFSEFVYPKCRIPY-KITELTGITDEI 487 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D + +F +F + +AHNA FD GFI + + S I+DT+ + Sbjct: 488 VQDADPIEVVLPKFIEFID--GCAVVAHNAAFDTGFIKKNCNDLGLE--FNSTIVDTVPL 543 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 AR +P R LN + K G+++ + H A+ D+ +++++ Sbjct: 544 ARFLYPELKRVKLNLVAKHLGVSLENH--HRAVDDAKATAEIFL 585 >gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952] gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952] Length = 1445 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 8/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV+ + +F F+ P G S + L GITDE Sbjct: 426 VVFDVETTGLSAVYDTIIELAAVK-MHKGNVEASFDEFIDP-GHPLSNTTINLTGITDEM 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S + F +F + A +AHNA FD+GF+N ++ P + +IDTL + Sbjct: 484 VRGSKSEEEVLRLFREF--SEGAVLVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLEL 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 AR +P R L L K++G+++ HR+ + A HL Sbjct: 541 ARYLYPEFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580 >gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2] gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2] Length = 1435 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 93/162 (57%), Gaps = 9/162 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ + S + L GITD+ Sbjct: 422 VVFDLETTGLSAVYDTIIELAAVKIKGGQIIDK-FESFANPH-HELSSTTIDLTGITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ P + ++ ++ + +AHNA FD+GF+ ++ D + + IDTL + Sbjct: 480 VKNAPEVEEVIRKYHEWAGDHI--MVAHNASFDMGFLYVCYKKYGIDTVHAT--IDTLEL 535 Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLLS 168 AR HP +N LN+L K++GI ++ HR+ + S+LL+ Sbjct: 536 ARMLHPELKNHRLNTLAKKFGIELTQHHRAIYDTEATSYLLT 577 >gi|226949776|ref|YP_002804867.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A2 str. Kyoto] gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A2 str. Kyoto] Length = 1432 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTG SKND+IIEIGAV+ ++ K F F+ P ++ P+ + +L ITD+ Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--ERSIPDKITELTSITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DK + I F +F N+ +AHNA FDV FIN + + + + ++DT++ Sbjct: 476 MVDDKEAIDKILPRFIEFIG--NSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMDTVT 531 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 532 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|322806689|emb|CBZ04258.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065] Length = 1432 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTG SKND+IIEIGAV+ ++ K F F+ P ++ P+ + +L ITD+ Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--ERSIPDKITELTSITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DK + I F +F N+ +AHNA FDV FIN + + + + ++DT++ Sbjct: 476 MVDDKEAIDKILPRFIEFIG--NSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMDTVT 531 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 532 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408] gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408] Length = 1450 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 8/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ +F F+ P G S + L GITDE Sbjct: 426 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDEM 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S + F +F ++ +AHNA FD+GF+N R P + +IDTL + Sbjct: 484 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPVIDTLEL 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 AR +P R L L K++G+++ HR+ + A HL Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580 >gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland] gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum F str. Langeland] gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum F str. 230613] Length = 1432 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTG SKND+IIEIGAV+ ++ K F F+ P ++ P+ + +L ITD+ Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--ERSIPDKITELTSITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DK + I F +F N+ +AHNA FDV FIN + + + + ++DT++ Sbjct: 476 MVDDKEAIDKILPRFIEFIG--NSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMDTVT 531 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 532 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039] gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039] Length = 1450 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 8/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ +F F+ P G S + L GITDE Sbjct: 426 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDEM 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S + F +F ++ +AHNA FD+GF+N R P + +IDTL + Sbjct: 484 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPVIDTLEL 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 AR +P R L L K++G+++ HR+ + A HL Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580 >gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30] gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10] gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30] gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10] Length = 1449 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 8/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL + D IIE+ AV + +F F+ P G S ++L GITDE Sbjct: 424 IVFDVETTGLSAVYDTIIELAAVR-MHKGNVEASFDEFIDP-GHPLSRTTVELTGITDEM 481 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S + F +F + A +AHNA FD+GF+N ++ P + +IDTL + Sbjct: 482 VRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLEL 538 Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 AR +P R L L K++G+++ HR+ + A HL Sbjct: 539 ARYLYPEFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 578 >gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20] gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20] Length = 1449 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 8/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL + D IIE+ AV + +F F+ P G S ++L GITDE Sbjct: 424 IVFDVETTGLSAVYDTIIELAAVR-MHKGNVEASFDEFIDP-GHPLSRTTVELTGITDEM 481 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S + F +F + A +AHNA FD+GF+N ++ P + +IDTL + Sbjct: 482 VRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLEL 538 Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 AR +P R L L K++G+++ HR+ + A HL Sbjct: 539 ARYLYPEFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 578 >gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1071] gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1679] gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium U0317] gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1071] gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1679] gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium U0317] Length = 1450 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 8/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ +F F+ P G S + L GITDE Sbjct: 426 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDEM 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S + F +F ++ +AHNA FD+GF+N R P + +IDTL + Sbjct: 484 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPVIDTLEL 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 AR +P R L L K++G+++ HR+ + A HL Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580 >gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4] gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4] Length = 1446 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 14/159 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + IIE+ AV++ K N +F+ F+ P G S + L GITD Sbjct: 427 VVFDVETTGLSAVYNSIIELSAVKM---HKGNIIESFEQFIDP-GHPLSQTTINLTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDT 126 E + S + + F +F + +AHNA FD+GF+N + N D +P +IDT Sbjct: 483 EMVHGSKSEEEVLTLFKEFAGDHI--LVAHNASFDMGFLNTSNAKHNIPDATNP--VIDT 538 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 L ++R HP ++ LN+L K+YGI + H A+ DS Sbjct: 539 LELSRFLHPQYKSHRLNTLAKKYGINLEQH--HRAIFDS 575 >gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636] gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636] Length = 1450 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 8/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ +F F+ P G S + L GITDE Sbjct: 426 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDEM 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S + F +F ++ +AHNA FD+GF+N R P + +IDTL + Sbjct: 484 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPVIDTLEL 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 AR +P R L L K++G+++ HR+ + A HL Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580 >gi|76788222|ref|YP_329936.1| DNA polymerase III epsilon subunit family exonuclease [Streptococcus agalactiae A909] gi|77412263|ref|ZP_00788580.1| Unknown [Streptococcus agalactiae CJB111] gi|77414710|ref|ZP_00790841.1| Unknown [Streptococcus agalactiae 515] gi|76563279|gb|ABA45863.1| exonuclease, DNA polymerase III, epsilon subunit family [Streptococcus agalactiae A909] gi|77159237|gb|EAO70417.1| Unknown [Streptococcus agalactiae 515] gi|77161697|gb|EAO72691.1| Unknown [Streptococcus agalactiae CJB111] Length = 604 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 108/191 (56%), Gaps = 12/191 (6%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 K R I FDIETTGL+S+ DRI+E+GAV L + K +++ + N + N S + +++ Sbjct: 50 KNRFIAFDIETTGLNSQQDRIVEVGAV-LFENGKVVDSYESLV--NAKVNISADVTRINN 106 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 IT+ +K+ PS + ++ E +F + AHNAKFD+GF+ L R+ + Sbjct: 107 ITNRMIKNAPSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLGYNG--EI 164 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVGG 178 + +DTLS++R+ RN N++ + + + SHR+K A++ ++L+ ++ + Sbjct: 165 KYLDTLSLSRKNVKGLRNYKQNTVAEYFNLQNKNSHRAKSDAIICGNILTKLFFIIENQK 224 Query: 179 SQINFGFKTNE 189 S+ +F K N+ Sbjct: 225 SRKSFSSKNNK 235 >gi|168184630|ref|ZP_02619294.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Bf] gi|182672306|gb|EDT84267.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Bf] Length = 1432 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTG SKND+IIEIGAV+ ++ K F F+ P ++ P+ + +L ITD+ Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--KRIIPDKITELTSITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++DK + I F DF ++ +AHNA FDV FIN + + + + ++DT++ Sbjct: 476 MVQDKETIDKILPRFIDFIG--DSVVVAHNADFDVSFINKNCKDLKIEF--ENSVMDTVT 531 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 532 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|237795859|ref|YP_002863411.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Ba4 str. 657] gi|229260819|gb|ACQ51852.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Ba4 str. 657] Length = 1432 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTG SKND+IIEIGAV+ ++ K F F+ P ++ P+ + +L ITD+ Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--KRIIPDKITELTSITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++DK + I F DF ++ +AHNA FDV FIN + + + + ++DT++ Sbjct: 476 MVQDKETIDKILPRFIDFIG--DSVVVAHNADFDVSFINKNCKDLKIEF--ENSVMDTVT 531 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 532 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|148380379|ref|YP_001254920.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC 3502] gi|153932951|ref|YP_001384598.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 19397] gi|153935522|ref|YP_001388114.1| DNA polymerase III PolC [Clostridium botulinum A str. Hall] gi|148289863|emb|CAL83971.1| DNA polymerase III PolC-type [Clostridium botulinum A str. ATCC 3502] gi|152928995|gb|ABS34495.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A str. ATCC 19397] gi|152931436|gb|ABS36935.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A str. Hall] Length = 1432 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTG SKND+IIEIGAV+ ++ K F F+ P ++ P+ + +L ITD+ Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--ERSIPDKITELTSITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DK + I F DF ++ +AHNA FDV FIN + + + + ++DT++ Sbjct: 476 MVDDKEAIDKILPRFIDFIG--DSVVVAHNASFDVSFINKNCKDLKIEF--ENSVMDTVT 531 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 532 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905] gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905] Length = 1443 Score = 85.5 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 93/167 (55%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ D ++ ++ F P+ S ++L GITD+ Sbjct: 429 VVFDVETTGLSTAYDTIIELAAVKIKDGQVIDK-YESFANPH-HPLSATTIELTGITDDM 486 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P + EF F + +AHNA FD+GF+ ++ + +IDTL + Sbjct: 487 VRHAPEVEQVIKEFHAFIGDGIV--VAHNASFDIGFLYTGYKKFGLEG-TTHPVIDTLEL 543 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR +P+ +N LN+LCK++ I ++ H A+ D+ + ++++ Sbjct: 544 ARLLYPTMKNHRLNTLCKKFNIELTQH--HRAIYDTEATGYLLLQLL 588 >gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2] gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2] Length = 1449 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 8/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL + D IIE+ AV + +F F+ P G S ++L GITDE Sbjct: 424 IVFDVETTGLSAVYDTIIELAAVR-MHKGNVEGSFDEFIDP-GHPLSRTTVELTGITDEM 481 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S + F +F + A +AHNA FD+GF+N ++ P + +IDTL + Sbjct: 482 VRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLEL 538 Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 AR +P R L L K++G+++ HR+ + A HL Sbjct: 539 ARYLYPEFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 578 >gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501] gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501] Length = 1450 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 8/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ +F F+ P G S + L GITDE Sbjct: 426 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDEM 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S + F +F ++ +AHNA FD+GF+N R P + +IDTL + Sbjct: 484 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPVIDTLEL 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 AR +P R L L K++G+++ HR+ + A HL Sbjct: 541 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 580 >gi|302384787|ref|YP_003820609.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] gi|302195415|gb|ADL02986.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] Length = 235 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 86/168 (51%), Gaps = 13/168 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D+ETTGLD K D+IIEIGAV+++ T FQ F+ P RK + L GI+D Sbjct: 6 IAVDLETTGLDPKLDKIIEIGAVKVVKGQMTEH-FQTFINPF-RKLESRVIILTGISDRQ 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P + EF +F + + H+ FD F+ IN+ R IDTL + Sbjct: 64 LEASPGIGEVIGEFLEF--AEGLPVLGHHVIFDYSFLKR--AAINEGYSFERRGIDTLKL 119 Query: 130 ARR-KHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKM 174 ARR P + +L + C +GI T+SHR AL D+ +Y +M Sbjct: 120 ARRFMPPEEKKNLGAACGYFGIEQTMSHR----ALADASAAHGLYQEM 163 >gi|56808719|ref|ZP_00366439.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus pyogenes M49 591] gi|209560099|ref|YP_002286571.1| DNA polymerase III PolC [Streptococcus pyogenes NZ131] gi|209541300|gb|ACI61876.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131] Length = 1465 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+D ++ F DF +++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 486 LQDAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568 >gi|237653313|ref|YP_002889627.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237624560|gb|ACR01250.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 769 Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 101/175 (57%), Gaps = 12/175 (6%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSPEALK 61 +++ VFD ETTGL+ S+ D II++GA +L+ K R +F+ + P R +PE+ K Sbjct: 575 SELSYTVFDTETTGLNPSQGDEIIQVGATRILN-GKLLRAESFEQLVDPE-RPLAPESAK 632 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT E L+ +P+ + F F + IAHNA FD+ F+ + ++ P Sbjct: 633 IHGITSEMLRGQPTIDKVLPAFHAF--AADTVLIAHNAAFDMRFLQLKEEQTGLRFDHP- 689 Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +IDTL ++ HP+ + L ++ +R G+TI R H AL D+ + ++V++K++ Sbjct: 690 -VIDTLLLSAVVHPNQESHRLEAIAERLGLTIVGR--HTALGDAIVTAEVFLKLI 741 >gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1554 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 98/168 (58%), Gaps = 19/168 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66 +VFDIETTG K ++IIEIGAV+++D T+R F F+ P + P + KL GI Sbjct: 532 VVFDIETTGFSPKKNKIIEIGAVKVVDGKITDR-FSSFVNP----DVPIPFDIEKLTGIN 586 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRINKDPLDPSRII 124 D + P I +F DF +A +AHNA FDVGFI+ AE Q ++ +P ++ Sbjct: 587 DSMVLPYPKIDVILPQFLDFVG--DAVLVAHNASFDVGFISHFAEEQGLHFNP----TVL 640 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 DT++IAR P+ +R L+++ K I++++ H A+ D+ ++++ Sbjct: 641 DTVTIARLLLPNLNRFKLDTVAKALNISLANH--HRAVDDAGATAEIF 686 >gi|77409408|ref|ZP_00786106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae COH1] gi|77171990|gb|EAO75161.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae COH1] Length = 1468 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD Sbjct: 431 VVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSDFTTELTGITDNH 488 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + EF +F Q +AHNA FDVGF+NA +R N PL +IDTL Sbjct: 489 VRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQPVIDTLEF 545 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ + + H Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH 571 >gi|77405656|ref|ZP_00782744.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae H36B] gi|77175729|gb|EAO78510.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae H36B] Length = 1468 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD Sbjct: 431 VVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSDFTTELTGITDNH 488 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + EF +F Q +AHNA FDVGF+NA +R N PL +IDTL Sbjct: 489 VRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQPVIDTLEF 545 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ + + H Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH 571 >gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755] gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755] Length = 1449 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 8/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL + D IIE+ AV + +F F+ P G S ++L GITDE Sbjct: 424 IVFDVETTGLSAVYDTIIELAAVR-MHKGNVEGSFDEFIDP-GHPLSRTTVELTGITDEM 481 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S + F +F + A +AHNA FD+GF+N ++ P + +IDTL + Sbjct: 482 VRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLEL 538 Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 AR +P R L L K++G+++ HR+ + A HL Sbjct: 539 ARYLYPEFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 578 >gi|187780046|ref|ZP_02996519.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC 15579] gi|187773671|gb|EDU37473.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC 15579] Length = 855 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E+TG+++ D I++I +++ + + F+ FL P +K ++ +HG +D+F Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEVIEKFERFLTP--KKYVGDSYLVHGFSDQF 553 Query: 70 LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+K + +F +F ++ I HN FD+ +N+ELQR+ + + DTL Sbjct: 554 LKEKGEDKERVLKDFLEFV--KDTVVIGHNITFDITILNSELQRLGLEKANFKTYYDTLD 611 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR +PS N L +L K + +S H A+ D DV + M+ Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMVML 657 >gi|71904322|ref|YP_281125.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS6180] gi|123747742|sp|Q48R90|DPO3_STRPM RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|71803417|gb|AAX72770.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180] Length = 1465 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+D ++ F DF +++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 486 LQDAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568 >gi|76787214|ref|YP_330464.1| DNA polymerase III PolC [Streptococcus agalactiae A909] gi|76562271|gb|ABA44855.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae A909] Length = 1468 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD Sbjct: 431 VVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSDFTTELTGITDNH 488 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + EF +F Q +AHNA FDVGF+NA +R N PL +IDTL Sbjct: 489 VRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQPVIDTLEF 545 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ + + H Sbjct: 546 ARNLYPEYKRHGLGPLTKRFQVALEH 571 >gi|167746785|ref|ZP_02418912.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662] gi|167653745|gb|EDR97874.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662] Length = 1475 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 15/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGIT 66 +VFDIETTG +S+ DRIIEIGAV+++D + TF F+ P P K L IT Sbjct: 450 VVFDIETTGFNSQTDRIIEIGAVKVID-GEITETFSEFINP----QIPIPFKITQLTTIT 504 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE + + + ++ F +F ++ +AHNA FD GFI+ +R++ D P+ I+DT Sbjct: 505 DEMVMNADTIDAVLPRFLEFCG--DSVLVAHNAGFDTGFIHENAKRLDLD-FHPT-IVDT 560 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L ++R ++ L++LCK I + + H A+ D+ ++IK + Sbjct: 561 LGLSRSLMTHLAKFTLDNLCKNLNIKL--ETHHRAVDDATATGKIFIKFV 608 >gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41] gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41] Length = 1468 Score = 85.1 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 93/167 (55%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ D ++ ++ F P+ S ++L GITD+ Sbjct: 454 VVFDVETTGLSTAYDTIIELAAVKIKDGHVIDK-YESFANPH-HPLSATTIELTGITDDM 511 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P + EF F + +AHNA FD+GF+ ++ + +IDTL + Sbjct: 512 VRHAPEVEQVIKEFHAFIGDGIV--VAHNASFDIGFLYTGYKKFGLEG-TTHPVIDTLEL 568 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR +P+ +N LN+LCK++ I ++ H A+ D+ + ++++ Sbjct: 569 ARLLYPTMKNHRLNTLCKKFNIELTQH--HRAIYDTEATGYLLLQLL 613 >gi|81428867|ref|YP_395867.1| DNA polymerase III PolC [Lactobacillus sakei subsp. sakei 23K] gi|123564054|sp|Q38W73|DPO3_LACSS RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|78610509|emb|CAI55560.1| DNA-directed DNA polymerase III, polC-type [Lactobacillus sakei subsp. sakei 23K] Length = 1446 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 6/152 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL + D IIE+ AV++ D + +F F+ P R S +L IT+E Sbjct: 426 VIFDVETTGLSAVYDSIIELAAVKMRD-GEVVASFDEFIDPE-RPLSAFTTQLTSITNEM 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + + + F +F +A HN FD+GF+NA +R + D +D + +IDTL + Sbjct: 484 VHGAKKEAEVLAMFKEFTG--DAVLAGHNVSFDMGFLNAGYERNDIDLID-NPVIDTLEL 540 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160 +R HP +N L+SL KRY I + H + A Sbjct: 541 SRMLHPEYKNHKLDSLTKRYKINLEHHHRANA 572 >gi|228477790|ref|ZP_04062418.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus salivarius SK126] gi|228250482|gb|EEK09696.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus salivarius SK126] Length = 1464 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + ++ +I+I A ++ K N F F+ P G S +L GITD Sbjct: 427 VVFDVETTGLSAVHNDLIQIAASKM---HKGNIIEQFDEFIDP-GHPLSAFTTELTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K + EF +F Q +AHNA FDVGF+NA +R ++ P +IDTL Sbjct: 483 NHVKGAKPLVQVLQEFQEFC--QGTVLVAHNATFDVGFMNANYER-HQLPTISQPVIDTL 539 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 540 EFARNLYPEYKRHGLGPLTKRFGVALDH 567 >gi|328948895|ref|YP_004366232.1| DNA polymerase III subunit epsilon [Treponema succinifaciens DSM 2489] gi|328449219|gb|AEB14935.1| DNA polymerase III, epsilon subunit [Treponema succinifaciens DSM 2489] Length = 216 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 13/174 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 + FD ETTGL ++ + IIEIGAV+ F + + P P+ +K L ITD+ Sbjct: 23 VAFDTETTGLKAEKEFIIEIGAVKFNCDGIIGEPFDILIKPP--IELPQFIKDLTHITDK 80 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P +F +F + +AHNA+FD+GFIN+EL+R + L P+ IDTL+ Sbjct: 81 MISCCPCAKEAVPQFLNFVGGKETVLVAHNAQFDLGFINSELKRFSHPEL-PNVCIDTLN 139 Query: 129 IARRKHP-------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R +P + L SL KR+G I ++ H A D+ L +++ +++ Sbjct: 140 ASRWAYPDFIKEQEKGQYKLQSLAKRFG--IEAKAAHRANDDARLCMEIFKRII 191 >gi|312862610|ref|ZP_07722851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus vestibularis F0396] gi|311101870|gb|EFQ60072.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus vestibularis F0396] Length = 1464 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + ++ +I+I A ++ K N F F+ P G S +L GITD Sbjct: 427 VVFDVETTGLSAVHNDLIQIAASKM---HKGNIVEQFDEFIDP-GHPLSAFTTELTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K + EF +F Q +AHNA FDVGF+NA +R ++ P +IDTL Sbjct: 483 NHVKGAKPLVQVLQEFQEFC--QGTVLVAHNATFDVGFMNANYER-HQLPTISQPVIDTL 539 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 540 EFARNLYPEYKRHGLGPLTKRFGVALDH 567 >gi|187778984|ref|ZP_02995457.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579] gi|187772609|gb|EDU36411.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579] Length = 1442 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTG SKND+IIEIGAV+ ++ K F F+ P ++ PE + +L ITD+ Sbjct: 429 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--ERSIPEKITELTSITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DK + I F +F ++ +AHNA FDV FIN + + + + ++DT++ Sbjct: 486 MVDDKEAIDKILPRFIEFIG--DSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMDTVT 541 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 542 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 585 >gi|237802965|ref|YP_002888159.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/Jali20/OT] gi|231274199|emb|CAX10993.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/Jali20/OT] Length = 250 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D ETTGLD K DR+IE A+ E++D + FL R S E+ K+H Sbjct: 10 VCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVE-------FLIHPERAVSAESQKIHK 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-I 123 I+D L+DKP F +FS FF E++ + H+ FD+ ++ E +R+ + L + Sbjct: 63 ISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPKHHYV 121 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IDTL +A+ S N L +L + + + H+ H A+ D + V+ Sbjct: 122 IDTLRLAKEYGDSPNNSLEALARHF--NVPHQGNHRAMKDVEMNVKVF 167 >gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88] gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88] Length = 1427 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 9/165 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG +KND+IIEIGAV++ + K + F+ P R + ++L GI D Sbjct: 414 VVFDIETTGFSNKNDKIIEIGAVKIKE-GKVVDKYSTFVNPE-RIIPEKIIELTGIHDYM 471 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P + +F DF +++ +AHNA FDV FI + +P I+DT+ + Sbjct: 472 VKDAPKIEEVLPKFIDFI--EDSILVAHNANFDVSFIKKNCKDFGIHFNNP--ILDTIPL 527 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +P R LN + K GI + + H A+ D+ D+ +K Sbjct: 528 CKFLYPELKRYKLNVVAKHLGIPLLNH--HRAVEDAKTTGDILLK 570 >gi|226948601|ref|YP_002803692.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A2 str. Kyoto] gi|226844461|gb|ACO87127.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A2 str. Kyoto] Length = 855 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 94/168 (55%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E+TG++ D I++I +++ + + +FQ FL P +K+ ++ +HG +D+F Sbjct: 496 VVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLVHGFSDQF 553 Query: 70 LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ + + +F +F ++ + HN FD+ +N+EL+R++ + + DTL Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKANFKTYYDTLD 611 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR +PS N L +L K + +S H A+ D DV + M+ Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657 >gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341] gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341] Length = 1449 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 105/167 (62%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL ++ DR+IEI AV++ + ++ + +F+ ++ P R S +L IT++ Sbjct: 430 VVFDVETTGLSAERDRLIEIAAVKVKNGTEID-SFESYINPQ-RPISELITRLTSITNDD 487 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D P + + F+++ ++ + +AHNAKFD+GF++ +R+ + + + IDTL + Sbjct: 488 VRDAPLEKEVMTNFYNWLDKDDI-LVAHNAKFDLGFLDTCFERLGLENKNNAS-IDTLFV 545 Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R ++ + R+ L++L K Y + + H A+ D+ +++++KM+ Sbjct: 546 SRAENKEAKRHGLSNLAKLYKVRLVQH--HRAIYDTKATAEIFVKML 590 >gi|76789273|ref|YP_328359.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13] gi|255311354|ref|ZP_05353924.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276] gi|255317655|ref|ZP_05358901.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s] gi|255348913|ref|ZP_05380920.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70] gi|255503453|ref|ZP_05381843.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s] gi|255507132|ref|ZP_05382771.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923] gi|76167803|gb|AAX50811.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13] gi|289525581|emb|CBJ15059.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2] gi|296435141|gb|ADH17319.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150] gi|296436069|gb|ADH18243.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768] gi|296436997|gb|ADH19167.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222] gi|296437930|gb|ADH20091.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074] gi|296438861|gb|ADH21014.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023] gi|297140430|gb|ADH97188.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301] Length = 250 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D ETTGLD K DR+IE A+ E++D + FL R S E+ K+H Sbjct: 10 VCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVE-------FLIHPERAVSAESQKIHK 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-I 123 I+D L+DKP F +FS FF E++ + H+ FD+ ++ E +R+ + L + Sbjct: 63 ISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPKHHYV 121 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IDTL +A+ S N L +L + + + H+ H A+ D + V+ Sbjct: 122 IDTLRLAKEYGDSPNNSLEALARHF--NVPHQGNHRAMKDVEMNVKVF 167 >gi|116627026|ref|YP_819645.1| DNA polymerase III PolC [Streptococcus thermophilus LMD-9] gi|122268369|sp|Q03MX3|DPO3_STRTD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116100303|gb|ABJ65449.1| DNA polymerase III catalytic subunit, PolC type [Streptococcus thermophilus LMD-9] gi|312277486|gb|ADQ62143.1| DNA polymerase III polC-type [Streptococcus thermophilus ND03] Length = 1464 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + ++ +I+I A ++ K N F F+ P G S +L GITD Sbjct: 427 VVFDVETTGLSAVHNDLIQIAASKM---HKGNIVEQFDEFIDP-GYPLSAFTTELTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K + EF +F + A +AHNA FDVGF+NA +R ++ P +IDTL Sbjct: 483 NHVKGAKPLVQVLQEFQEFC--KGAVLVAHNATFDVGFMNANYER-HQLPTISQPVIDTL 539 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 540 EFARNLYPEYKRHGLGPLTKRFGVALDH 567 >gi|24378642|ref|NP_720597.1| DNA polymerase III PolC [Streptococcus mutans UA159] gi|32469722|sp|Q8DWE0|DPO3_STRMU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|24376501|gb|AAN57903.1|AE014864_1 DNA polymerase III, alpha subunit [Streptococcus mutans UA159] Length = 1465 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 82/153 (53%), Gaps = 10/153 (6%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKL 62 N+ +VFD+ETTGL + N+ +I+I A ++ K N F F+ P G S L Sbjct: 421 NEATYVVFDVETTGLSAINNDLIQIAASKM---HKGNIVEQFDEFIDP-GHPLSQFTTDL 476 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GITD+ +K S + EF F Q+ +AHNA FDVGF+NA +R + P Sbjct: 477 TGITDQHVKGAKPISQVLQEFQSFC--QDTVLVAHNATFDVGFMNANYER-HDLPKITQP 533 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154 +IDTL AR +P R+ L L KR+ +++ H Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEH 566 >gi|55820164|ref|YP_138606.1| DNA polymerase III PolC [Streptococcus thermophilus LMG 18311] gi|81561132|sp|Q5M6H0|DPO3_STRT2 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|55736149|gb|AAV59791.1| DNA polymerase III alpha subunit [Streptococcus thermophilus LMG 18311] Length = 1464 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + ++ +I+I A ++ K N F F+ P G S +L GITD Sbjct: 427 VVFDVETTGLSAVHNDLIQIAASKM---HKGNIVEQFDEFIDP-GYPLSAFTTELTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K + EF +F + A +AHNA FDVGF+NA +R ++ P +IDTL Sbjct: 483 NHVKGAKPLVQVLQEFQEFC--KGAVLVAHNATFDVGFMNANYER-HQLPTISQPVIDTL 539 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 540 EFARNLYPEYKRHGLGPLTKRFGVALDH 567 >gi|55822053|ref|YP_140494.1| DNA polymerase III PolC [Streptococcus thermophilus CNRZ1066] gi|81559957|sp|Q5M1Y0|DPO3_STRT1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|55738038|gb|AAV61679.1| DNA polymerase III alpha subunit [Streptococcus thermophilus CNRZ1066] Length = 1464 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + ++ +I+I A ++ K N F F+ P G S +L GITD Sbjct: 427 VVFDVETTGLSAVHNDLIQIAASKM---HKGNIVEQFDEFIDP-GYPLSAFTTELTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K + EF +F + A +AHNA FDVGF+NA +R ++ P +IDTL Sbjct: 483 NHVKGAKPLVQVLQEFQEFC--KGAVLVAHNATFDVGFMNANYER-HQLPTISQPVIDTL 539 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 540 EFARNLYPEYKRHGLGPLTKRFGVALDH 567 >gi|237804887|ref|YP_002889041.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/TZ1A828/OT] gi|231273187|emb|CAX10100.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/TZ1A828/OT] Length = 250 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D ETTGLD K DR+IE A+ E++D + FL R S E+ K+H Sbjct: 10 VCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVE-------FLIHPERAVSAESQKIHK 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-I 123 I+D L+DKP F +FS FF E++ + H+ FD+ ++ E +R+ + L + Sbjct: 63 ISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPKHHYV 121 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IDTL +A+ S N L +L + + + H+ H A+ D + V+ Sbjct: 122 IDTLRLAKEYGDSPNNSLEALARHF--NVPHQGNHRAMKDVEMNVKVF 167 >gi|313891131|ref|ZP_07824750.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pseudoporcinus SPIN 20026] gi|313120494|gb|EFR43614.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pseudoporcinus SPIN 20026] Length = 1466 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ F F+ P G S +L GITD Sbjct: 429 VVFDVETTGLSAINNDLIQIAASKMYK-GNIIEQFDEFINP-GHPLSTFTTELTGITDNH 486 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + F DF QN +AHNA FDVGF+NA +R ++ PL +IDTL Sbjct: 487 LIGAKPILKVLEAFQDFC--QNTILVAHNASFDVGFMNANYER-HQLPLINQPVIDTLEF 543 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 544 ARNLYPEYKRHGLGPLTKRFQVSLDH 569 >gi|322374172|ref|ZP_08048705.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C150] gi|321276877|gb|EFX53949.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C150] Length = 1464 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + ++ +I+I A ++ K N F F+ P G S +L GITD Sbjct: 427 VVFDVETTGLSAVHNDLIQIAASKM---HKGNIIEQFDEFIDP-GYPLSAFTTELTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K + EF F Q +AHNA FDVGF+NA +R N+ P +IDTL Sbjct: 483 NHVKGAKPLLQVLQEFQVFC--QGTVLVAHNATFDVGFMNANYER-NQLPTISQPVIDTL 539 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 540 EFARNLYPEYKRHGLGPLTKRFGVALDH 567 >gi|332653359|ref|ZP_08419104.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcaceae bacterium D16] gi|332518505|gb|EGJ48108.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcaceae bacterium D16] Length = 1396 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 53/126 (42%), Positives = 71/126 (56%), Gaps = 6/126 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FDIETTGLD + + IIEIGA +L + TF F+ P GR SPE + L GITDE Sbjct: 372 VCFDIETTGLDKRREVIIEIGAA-VLKNGEVTETFNTFVAP-GRILSPEIIHLTGITDEM 429 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L PS F DF ++ AHNA+FD+GFI+ ++ +PS ID+L + Sbjct: 430 LVGAPSQEEALRAFLDFVGDR--PLAAHNAEFDMGFISTGCRKYGIPFTNPS--IDSLIL 485 Query: 130 ARRKHP 135 A+ P Sbjct: 486 AQNLLP 491 >gi|166154751|ref|YP_001654869.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu] gi|166155626|ref|YP_001653881.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336025|ref|ZP_07224269.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1] gi|165930739|emb|CAP04236.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu] gi|165931614|emb|CAP07190.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 250 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D ETTGLD K DR+IE A+ E++D + FL R S E+ K+H Sbjct: 10 VCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVE-------FLIHPERAVSAESQKIHK 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-I 123 I+D L+DKP F +FS FF E++ + H+ FD+ ++ E +R+ + L + Sbjct: 63 ISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPKHHYV 121 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IDTL +A+ S N L +L + + + H+ H A+ D + V+ Sbjct: 122 IDTLRLAKEYGDSPNNSLEALARHF--NVPHQGNHRAMKDVEMNVKVF 167 >gi|167628537|ref|YP_001679036.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1] gi|167591277|gb|ABZ83025.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1] Length = 255 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 15/176 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVF--LCPNGRKNSPEALK 61 +VFD ETTGL ND +I +G V L ++++ +VF L R A + Sbjct: 63 VVFDTETTGLSVPNDDVIALGGVALPPGGEGAEWTEDTGKVRVFDRLVNPHRPIPVLARE 122 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + GI D+ + +P+ + +F DF + A +AH FDVGF++ L+ + P Sbjct: 123 ITGIDDDMVFSQPTIYPVLDDFLDFID--GAVLVAHGIAFDVGFLDKYLRPLRTKLYHP- 179 Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +IDT++++R P + + L++L YGIT R +H AL D+ + +D++ M+V Sbjct: 180 -VIDTITLSRVLEPFRAEHSLDALVADYGIT--PRRRHSALGDAQMTADLFAAMLV 232 >gi|306832698|ref|ZP_07465835.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338] gi|304425154|gb|EFM28283.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338] Length = 1464 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 6/154 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I N+ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 419 IELNEATYVVFDVETTGLSAVNNDLIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTE 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD +++ + F +F Q+ +AHNA FDVGF+NA +R + P+ Sbjct: 477 LTGITDNHVRNAKPIEEVLQMFQNFC--QDTVLVAHNATFDVGFMNANYER-HGMPIITQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154 +IDTL AR +P R+ L L KR+ +++ H Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEH 567 >gi|322517665|ref|ZP_08070529.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124] gi|322123697|gb|EFX95287.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124] Length = 1424 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + ++ +I+I A ++ K N F F+ P G S +L GITD Sbjct: 387 VVFDVETTGLSAVHNDLIQIAASKM---HKGNIVEQFDEFIDP-GHPLSAFTTELTGITD 442 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K + EF +F Q +AHNA FDVGF+NA +R ++ P +IDTL Sbjct: 443 NHVKGAKPLVQVLQEFQEFC--QGTVLVAHNATFDVGFMNANYER-HQLPTILQPVIDTL 499 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 500 EFARNLYPEYKRHGLGPLTKRFGVALDH 527 >gi|323126468|gb|ADX23765.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1465 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ ++ F DF +++ +AHNA FDVGF+NA +R N P +IDTL Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHNL-PKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568 >gi|256384095|gb|ACU78665.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma mycoides subsp. capri str. GM12] gi|256384927|gb|ACU79496.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma mycoides subsp. capri str. GM12] gi|296455696|gb|ADH21931.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 1482 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 5/169 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FD+ETTGL + D IIE GA+E + + + + P + + KL IT+ Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKAKLKAFTQ-KLTNITE 492 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+DKPS F + + ++A +AHNA FD F++ +++ L+ + IIDTL Sbjct: 493 KMLEDKPSIEQAFKQINEII--KDAILVAHNANFDFTFLSYWSEKLGYGKLE-NTIIDTL 549 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +I+R +P ++ L SL KR I+ H D+ +L+D+Y +M+ Sbjct: 550 TISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 598 >gi|94991249|ref|YP_599349.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10270] gi|166217452|sp|Q1JEV4|DPO3_STRPD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|94544757|gb|ABF34805.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270] Length = 1465 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+D ++ F DF +++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 486 LQDAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568 >gi|251781676|ref|YP_002995978.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390305|dbj|BAH80764.1| DNA polymerase III subunit alpha [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1465 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ ++ F DF +++ +AHNA FDVGF+NA +R N P +IDTL Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHNL-PKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568 >gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium sp. AT7] gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium sp. AT7] Length = 1395 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 102/186 (54%), Gaps = 15/186 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + IIE+ AV++ K N +F+ F+ P G S + L GITD Sbjct: 427 VVFDVETTGLSAVYNSIIELSAVKM---HKGNIIESFEQFIDP-GHPLSQTTINLTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDT 126 E ++ S + + F +F ++ +AHNA FD+GF+N + N D +P +IDT Sbjct: 483 EMVQGSKSEEEVLTLFKEFAG--DSILVAHNASFDMGFLNTSNAKHNIPDAENP--VIDT 538 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 L ++R HP ++ LN+L K+YG+ + HR+ A HL V++K I+F Sbjct: 539 LELSRFLHPQFKSHRLNTLAKKYGVNLEQHHRAIFDAETTGHLCW-VFLKEAREEHDIHF 597 Query: 184 GFKTNE 189 + NE Sbjct: 598 QDQLNE 603 >gi|15605265|ref|NP_220051.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D/UW-3/CX] gi|3328974|gb|AAC68138.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX] gi|297748666|gb|ADI51212.1| Exonuclease family protein [Chlamydia trachomatis D-EC] gi|297749546|gb|ADI52224.1| Exonuclease family protein [Chlamydia trachomatis D-LC] Length = 250 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D ETTGLD K DR+IE A+ E++D + FL R S E+ K+H Sbjct: 10 VCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVE-------FLIHPERAVSAESQKIHK 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-I 123 I+D L+DKP F +FS FF E++ + H+ FD+ ++ E +R+ + L + Sbjct: 63 ISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPKHHYV 121 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IDTL +A+ S N L +L + + + H+ H A+ D + V+ Sbjct: 122 IDTLRLAKGYGDSPNNSLEALARHF--NVPHQGNHRAMKDVEMNVKVF 167 >gi|167770615|ref|ZP_02442668.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM 17241] gi|167667210|gb|EDS11340.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM 17241] Length = 1445 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL + +RI EIGAV+L + +R F F+ P R P+ +L GITD+ Sbjct: 427 IVFDLETTGLSAATERITEIGAVKLRNGEIVDR-FNTFVNPE-RSIPPKITELTGITDDD 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P +F+ F +A IAHNA FD F+ +R + IDT+ + Sbjct: 485 VRGAPLEGEALRQFYAFCGGSSAVLIAHNAPFDTSFLRQCARRCGMEY--NFTAIDTVVL 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R P ++ L+ + K G + + H A D+ +L+ +YI+MM Sbjct: 543 SRSLFPELKKHKLDIVAKHLG--LGEFNHHRACDDAEMLARIYIRMM 587 >gi|19746871|ref|NP_608007.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS8232] gi|24418360|sp|Q8NZB5|DPO3_STRP8 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|19749113|gb|AAL98506.1| DNA polymerase III alpha chain [Streptococcus pyogenes MGAS8232] Length = 1465 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ ++ F DF +++ +AHNA FDVGF+NA +R N P +IDTL Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHNL-PKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568 >gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1] gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1] gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ST-III] gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Lactobacillus plantarum WCFS1] gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1] gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1437 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD ETTGL + DR+IE+ AV+++ + ++ F+ F+ P G S L ITD+ Sbjct: 423 VIFDTETTGLSAIYDRVIELSAVKMVKGNVVDQ-FEEFIDP-GFHLSETTTNLTSITDDM 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S +F F +F+ +A + HN FD+GF+N R + P+ + IIDTL++ Sbjct: 481 VRGSKSEEEVFKLFREFYG--DAIVVGHNVTFDIGFMNTGYARHHMGPIT-NPIIDTLTL 537 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 AR +P+ R LN+L K++ + + H H A+ D+ Sbjct: 538 ARWLYPNLRGYRLNTLAKKFNVNLEHH--HRAIYDA 571 >gi|146276555|ref|YP_001166714.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] gi|145554796|gb|ABP69409.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] Length = 695 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 10/194 (5%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61 R + +VFD ETTGL D I++I AV +++ + F + P R P + + Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVFDTLVNPR-RPIPPSSTE 548 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGITD + D P + + +F F + A +AHNA FD+ F+ I++ +P Sbjct: 549 VHGITDAMVADAPDMTEVGRQFHKF--AEGAVLVAHNAPFDMEFLRRAELLIDRRFDNP- 605 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK---MMVG 177 I+DT+ ++ + + L++L R GITI ++H A+ D+ +D ++K M+ G Sbjct: 606 -ILDTVLLSAVLFGQTEVHSLDALAHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQG 664 Query: 178 GSQINFGFKTNEDR 191 FG +E R Sbjct: 665 RGFETFGAVLSEVR 678 >gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046] Length = 1443 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 94/167 (56%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTG + D IIE+ AV++ + + TF+ F P+ RK + + ++L ITD+ Sbjct: 430 IVFDVETTGFSNVYDTIIELAAVKIKN-GQVIDTFERFSNPH-RKLTAKIIELTHITDDM 487 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + P S + EF DF + +AHNA FD+GF+ + + P IDT+ + Sbjct: 488 LVNAPELSDVIREFHDFIG--DGVVVAHNAAFDLGFLYVAYKNAGIEVRHPG--IDTVEL 543 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R +P + ++L +L K+Y I ++ H A+ D+ ++++ ++ Sbjct: 544 SRLVNPGQKSHNLKTLTKKYNIELTQH--HRAIYDTEATGELFLHLL 588 >gi|153939167|ref|YP_001390679.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum F str. Langeland] gi|152935063|gb|ABS40561.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum F str. Langeland] Length = 855 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E+TG++ D I++I +++ + + +FQ FL P +K+ ++ +HG +D+F Sbjct: 496 VVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLVHGFSDQF 553 Query: 70 LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ + + +F +F ++ + HN FD+ +N+EL+R++ + DTL Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTLD 611 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR +PS N L +L K + +S H A+ D DV + M+ Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657 >gi|170754352|ref|YP_001780953.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum B1 str. Okra] gi|169119564|gb|ACA43400.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum B1 str. Okra] Length = 855 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E+TG++ D I++I +++ + + +FQ FL P +K+ ++ +HG +D+F Sbjct: 496 VVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLVHGFSDQF 553 Query: 70 LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ + + +F +F ++ + HN FD+ +N+EL+R++ + DTL Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTLD 611 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR +PS N L +L K + +S H A+ D DV + M+ Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657 >gi|25011356|ref|NP_735751.1| hypothetical protein gbs1312 [Streptococcus agalactiae NEM316] gi|24412894|emb|CAD46971.1| Unknown [Streptococcus agalactiae NEM316] Length = 604 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 107/191 (56%), Gaps = 12/191 (6%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 K R I FDIET GL+S+ DRI+E+GAV L + K +++ + N + N S + +L+ Sbjct: 50 KNRFIAFDIETPGLNSQQDRIVEVGAV-LFENGKVVDSYESLV--NAKVNISADVTRLNN 106 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 IT+ +K+ PS + ++ E +F + AHNAKFD+GF+ L R+ + Sbjct: 107 ITNRMIKNAPSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLGYN--GEI 164 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVGG 178 + +DTLS++R+ RN N++ + + + SHR+K A++ ++L+ ++ + Sbjct: 165 KYLDTLSLSRKNVKGLRNYKQNTVAEYFNLQNKNSHRAKSDAIICGNILTKLFFIIENQK 224 Query: 179 SQINFGFKTNE 189 S+ +F K N+ Sbjct: 225 SRKSFSSKNNK 235 >gi|288959104|ref|YP_003449445.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum sp. B510] gi|288911412|dbj|BAI72901.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum sp. B510] Length = 702 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 10/174 (5%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKL 62 +++ +VFD ETTGL S D I++I AV ++ T TF + + P R PE++ Sbjct: 505 DRLHYVVFDTETTGLSPSAGDEIVQIAAVRIVGGRILTGETFNMLVDPK-RPIPPESIPF 563 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITD + KP+ ++ +F F + A +AHNA FD+ F+ + +R D Sbjct: 564 HGITDAMVAGKPTIDTVLPQFRSFVS--GAVLVAHNAAFDLKFLKMK-ERAAGVTFD-CP 619 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++R + + L+ + +R GI + R H AL DS + + V+++M+ Sbjct: 620 VLDTMLLSRMLLGNDGDHTLDGIAQRLGIAVVDR--HTALGDSLVTAAVFLRMI 671 >gi|42560899|ref|NP_975350.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492396|emb|CAE76992.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320644|gb|ADK69287.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 1482 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 5/169 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FD+ETTGL + D IIE GA+E + + + + P + + KL IT+ Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKTKLKAFTQ-KLTNITE 492 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+DKPS F + + ++A +AHNA FD F++ +++ L+ + IIDTL Sbjct: 493 KMLEDKPSIEQAFKQINEII--KDAILVAHNANFDFTFLSYWSEKLGYSKLE-NTIIDTL 549 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +I+R +P ++ L SL KR I+ H D+ +L+D+Y +M+ Sbjct: 550 TISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 598 >gi|312960550|ref|ZP_07775056.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] gi|311285076|gb|EFQ63651.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] Length = 142 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 3/116 (2%) Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 15 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLS 74 Query: 183 FGFKTNEDRFFKEEKKTVPN-ISLLKRDKPLFT--RITKEELDEHDKTIQTLGKNA 235 ++ E P+ I L D+ T R +++++ EH ++ + K+A Sbjct: 75 LAGNASDGSGSAEGSGNRPSEIRRLPADRKPTTIIRASEQDMAEHAARLEAIAKSA 130 >gi|289424040|ref|ZP_06425828.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus anaerobius 653-L] gi|289155559|gb|EFD04236.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus anaerobius 653-L] Length = 1440 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 94/167 (56%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL +D + EIGAV++ + + +F F+ P S + +L IT+E Sbjct: 427 VVFDIETTGLSPHSDNLTEIGAVKVQNCEIVD-SFSTFVNPK-MDISYQIQELTRITNEM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD PS EF +F +++ +AHNA FD GFI + Q++ + +DTL++ Sbjct: 485 VKDAPSLEEALPEFLEF--AKDSVLVAHNADFDTGFIYQKCQQLGLEY--NFEKVDTLTL 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR + + R L+ +CK G+ ++ H A+ D+ ++V+IK + Sbjct: 541 ARIINTNLKRFSLDKVCKEMGVVLA--GHHRAVNDAQATAEVFIKYL 585 >gi|254302688|ref|ZP_04970046.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322880|gb|EDK88130.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 1454 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 24/207 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL+S + IIEIGAV++ +R Q L GR ++ ITDE Sbjct: 428 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 + ++P + +F DF +A +AHNA FD+GFI ++++ +N D S +IDTL Sbjct: 486 VANEPKIDEVIGKFIDFVG--DAVLVAHNAPFDMGFIKRDVKKYLNIDL--QSSVIDTLQ 541 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179 +AR P + L L K G+ + H A+ DS ++++I K + Sbjct: 542 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLDKYKEKGLEYIK 599 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLL 206 IN GF+ N +K+++ NI +L Sbjct: 600 DINVGFEVN------VKKQSLKNIMVL 620 >gi|254519350|ref|ZP_05131406.1| helicase [Clostridium sp. 7_2_43FAA] gi|226913099|gb|EEH98300.1| helicase [Clostridium sp. 7_2_43FAA] Length = 872 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+E+TG D D II+I A+++ Y + +F+ FL +K+ + K+HG +DEF Sbjct: 498 IVFDVESTGTDVTEDEIIQIAAIKINKYGEVIDSFEKFL--KNKKSVESSFKVHGFSDEF 555 Query: 70 LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L +K + EF DF + A + HN ++D+ +N+EL R N D DTL Sbjct: 556 LNEKGEDKKKVLKEFIDF--SKGAVIVGHNVQYDINILNSELYRNNLDGTKFKAFYDTLD 613 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I RR + S N L +L K + ++ H A+ D SD+ ++ + Sbjct: 614 IYRRFYTSLPNYKLETLSKIF--ETKNKPSHDAMDDILATSDLLVRAI 659 >gi|331703357|ref|YP_004400044.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801912|emb|CBW54065.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 1482 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 5/169 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FD+ETTGL + D IIE GA+E + + + + P + + KL IT+ Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKTKLKAFTQ-KLTNITE 492 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+DKPS F + + ++A +AHNA FD F++ +++ L+ + IIDTL Sbjct: 493 KMLEDKPSIEQAFKQINEII--KDAILVAHNANFDFTFLSYWSEKLGYGKLE-NTIIDTL 549 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +I+R +P ++ L SL KR I+ H D+ +L+D+Y +M+ Sbjct: 550 TISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 598 >gi|148379300|ref|YP_001253841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. ATCC 3502] gi|153931399|ref|YP_001383675.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|153936519|ref|YP_001387223.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. Hall] gi|148288784|emb|CAL82868.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152927443|gb|ABS32943.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|152932433|gb|ABS37932.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. Hall] Length = 855 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E+TG+++ D I++I +++ + + +FQ FL P +K ++ +HG +D+F Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTP--KKFVGDSYLVHGFSDQF 553 Query: 70 LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ + + +F +F ++ + HN FD+ +N+EL+R++ + DTL Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVAFDISILNSELERLSLEKASFKTYYDTLD 611 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR +P+ N L +L K + +S H A+ D DV + M+ Sbjct: 612 IARRFYPNLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657 >gi|157961820|ref|YP_001501854.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC 700345] gi|157846820|gb|ABV87319.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC 700345] Length = 215 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 19/173 (10%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL ++ DR IEIGAV L D +R FQ + P G + S GI++ Sbjct: 19 IVLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDR-FQQLMNP-GFRISGFIESYTGISNA 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D PS + ++F DF + N +AHNA FD F++AEL+RIN L + ++ Sbjct: 77 MLADAPSCEEVMAQFADFIGDYN--LVAHNASFDQRFLDAELKRINCHYL--GQFACSML 132 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSK------HGALLDSHLLSDVYIKMM 175 IARR + ++ N + G +S+++ H AL DS + + +++ M+ Sbjct: 133 IARRLYQAAPN------HKLGSLVSYKNIQHDGVFHRALADSEMTASLWLAML 179 >gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] Length = 1428 Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 18/154 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +VFD ETTGL+++ +IEI AV EL+D+ + L G SP+ +L G Sbjct: 417 VVFDTETTGLNAREHTLIEIAAVKVRGGELVDHYTS-------LIDPGVPISPKIQELTG 469 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT + +K +P S + F F A +AHNA+FD+GF+ + +++ + P D ++ Sbjct: 470 ITSDMVKGQPGLSEVLEAFRKF--AAGAVLVAHNAEFDMGFLQSAARKLGQPPWDHP-VL 526 Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITI--SHR 155 DTL++AR +P RN L +L +++ + + HR Sbjct: 527 DTLALARVLYPRERNHRLKTLTQKFNVELVNHHR 560 >gi|167624226|ref|YP_001674520.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis HAW-EB4] gi|167354248|gb|ABZ76861.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis HAW-EB4] Length = 213 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL ++ DR IEIGAV L D +R FQ + P G + S GI++E Sbjct: 17 IVLDFETTGLSPNQGDRAIEIGAVMLKDGKVIDR-FQQLMNP-GFRVSGFIENYTGISNE 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D S ++ ++F DF + N +AHNA FD F++AEL R+N + P + ++ Sbjct: 75 MLSDAKSCETVMTQFADFIGDYN--LVAHNASFDQRFLDAELSRVNCNY--PGQFACSML 130 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKMM 175 IARR + + N L SL + I H H AL DS + +D+++ M+ Sbjct: 131 IARRLYQDAPNHKLGSLI--HYKNIQHDGVFHRALADSEMTADLWLVML 177 >gi|300856800|ref|YP_003781784.1| putative DNA polymerase III [Clostridium ljungdahlii DSM 13528] gi|300436915|gb|ADK16682.1| predicted DNA polymerase III [Clostridium ljungdahlii DSM 13528] Length = 362 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 11/173 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 + D ETTGLD +ND+I+EIGAV+ D +T++ F + P+ + PE + K++GI D Sbjct: 62 VALDFETTGLDYRNDKIVEIGAVKYKDEKETDK-FHFLINPHI--HIPEKITKINGIEDS 118 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD PS + + + DF N + HNA+FD+ F++ + ++ + + +IDTLS Sbjct: 119 MVKDSPSINEVIPKLIDFMG--NLPIVVHNARFDIDFLD---ENMSDNKYRGNSVIDTLS 173 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I+R+ + N K Y + I S H A+ D+ + +++Y+K G I Sbjct: 174 ISRKMFENIDNHRLQTIKDY-LKIDLNS-HRAIDDAKVAAEIYLKYCREGYPI 224 >gi|307945225|ref|ZP_07660561.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium sp. TrichSKD4] gi|307771098|gb|EFO30323.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium sp. TrichSKD4] Length = 470 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 7/188 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD ETTGL D I++IGAV +++ L GR P + K+HGITDE + Sbjct: 280 VFDTETTGLMPNKDEIVQIGAVRVVNGKIVPGEVIDQLVDPGRPIPPASTKVHGITDEMV 339 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K P + +F F +++ +AHNA FD+ F++ + + P I+DT+ ++ Sbjct: 340 KGAPDAVTSVQQFHTF--AKDSVIVAHNAPFDMAFLHRYGRESGLEWDHP--IMDTVLLS 395 Query: 131 RRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + ++ + L++LC R G+TI +H AL D+ ++V ++ I+ G+KT Sbjct: 396 AVVYGTTEIHTLDALCDRLGVTIPVELRHTALGDAQATAEVLCHLL--PILISKGYKTFG 453 Query: 190 DRFFKEEK 197 D + K Sbjct: 454 DVLTQTRK 461 >gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC 27755] gi|166027086|gb|EDR45843.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC 27755] Length = 1521 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 +VFD+ETTG S D+IIEIGAV++ + T++ + F+ P + P +L ITDE Sbjct: 479 VVFDLETTGFSSAKDKIIEIGAVKVENGEITDK-YSTFVNP--KIPIPFRITQLTSITDE 535 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P +I +F F +A +AHNA FDV FI ++ +P S +DT+ Sbjct: 536 MVMESPEIETILPQFLKFVG--DAVLVAHNASFDVSFIEENCRQQGIEPDFTS--VDTVG 591 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P+ S+ LN + K + IS H A+ D+ + +++Y+K + Sbjct: 592 LARVLLPTLSKFKLNVVAK--ALNISQEHHHRAVDDARVTAEIYVKFI 637 >gi|126734517|ref|ZP_01750263.1| exonuclease, putative [Roseobacter sp. CCS2] gi|126715072|gb|EBA11937.1| exonuclease, putative [Roseobacter sp. CCS2] Length = 461 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 11/156 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGLD + D ++++GAV +++ + TF+ + P GR ++ K+HGI+D+ Sbjct: 274 VVFDSETTGLDPQKDDVVQLGAVRIVNGRIIASETFEALVNP-GRPIPAQSTKVHGISDD 332 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F+ + F + NA +AHNA FD+ F+N D + + ++DT+ Sbjct: 333 MVAGAPDFTVVRDNFQRY--AANAVLVAHNAPFDMAFLN------RSDAIFQNPVMDTVH 384 Query: 129 I-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A S+ + L++LC R ++I +H AL D Sbjct: 385 LSAIVFGGSAEHTLDALCARLEVSIPEDLRHTALGD 420 >gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6] gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6] Length = 1439 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563 >gi|188997343|ref|YP_001931594.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188932410|gb|ACD67040.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 205 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 9/167 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL+ K IIEI A++ ++ S F + P+ KL GIT+ + Sbjct: 13 VVDLETTGLNPKTSEIIEIAAIK-VEGSVITEKFHTLVKPSIGFIPEHITKLTGITNPLV 71 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDTLSI 129 DKP +F F +F +N+ IAHNAKFD+ F+N A LQ K +P +I TL + Sbjct: 72 IDKPKIEQVFPHFLEF--TKNSIIIAHNAKFDISFLNEASLQLTGKLIQNP--VICTLVL 127 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A R P ++ L +L Y I + KH AL D+ + +++ K + Sbjct: 128 ANRLFPDLKSKSLTNLA--YHFNIPYHRKHRALADAEVTYELFKKFV 172 >gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012] Length = 1451 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575 >gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712] gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613] gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512] gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis DAPTO 516] gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712] gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613] gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512] gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis DAPTO 516] Length = 1451 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575 >gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1] gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1] gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol] gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1] gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG] gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1] gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1] gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol] gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1] gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG] Length = 1439 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563 >gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302] Length = 1451 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575 >gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109] gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109] gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017] Length = 1451 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575 >gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 1454 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 24/207 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL+S + IIEIGAV++ +R Q L GR ++ ITDE Sbjct: 428 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 + ++P + +F DF +A +AHNA FD+GFI ++++ +N D +IDTL Sbjct: 486 VANEPKIDEVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 541 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179 +AR P + L L K G+ + H A+ DS ++++I K + Sbjct: 542 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLDKYKEKGLEYMK 599 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLL 206 IN GF+ N +K+++ NI +L Sbjct: 600 DINVGFEVN------VKKQSLKNIMVL 620 >gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis] Length = 1439 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563 >gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470] gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470] Length = 1451 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575 >gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5] gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5] Length = 1439 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563 >gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3] gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704] gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3] gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704] Length = 1439 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563 >gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13] gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13] Length = 1449 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 107/207 (51%), Gaps = 24/207 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL+S + IIEIGAV++ +R Q L GR ++ ITDE Sbjct: 423 VIFDIETTGLNSHTNEIIEIGAVKIKSGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 + ++P + + +F DF +A +AHNA FD+GFI ++++ +N D +IDTL Sbjct: 481 VANEPKINEVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179 +AR P + L L K G+ + H A+ DS ++++I K + Sbjct: 537 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEKGLEYMK 594 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLL 206 IN GF+ N +K+++ NI +L Sbjct: 595 DINIGFEVN------VKKQSLKNIMVL 615 >gi|225163449|ref|ZP_03725765.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] gi|224801949|gb|EEG20229.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] Length = 197 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 98/175 (56%), Gaps = 9/175 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65 M ++FD+ETTG + + II+I AV L+D ++ TF ++ P R+ P+ + +L GI Sbjct: 1 MNLVIFDLETTGFSPRWNDIIQIAAVRLVDGRISDETFSTYVSP--RRPVPDHITELTGI 58 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRINKDPLDPSRI 123 TD + D P S F F + +AHN +FD+ FI AE ++ P+ P R Sbjct: 59 TDADVADAPETSDALRAFARFVGDVGPTTLVAHNGHRFDMRFI-AESCTLHGLPMRPIRF 117 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMM 175 ID++ ++++ P+ S ++L+ + +R GI I+ +H A D HLL++ +M+ Sbjct: 118 IDSIWLSKKLWPAESLHNLDVIVERLGIETGITGHRRHDARADVHLLANAVRRMI 172 >gi|237794676|ref|YP_002862228.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum Ba4 str. 657] gi|229260614|gb|ACQ51647.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum Ba4 str. 657] Length = 855 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E+TG+++ D I++I +++ + + +FQ FL P +K+ ++ +HG +D+F Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEAIESFQRFLNP--KKSVGDSYLVHGFSDQF 553 Query: 70 LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ + + +F F ++ + HN FD+ +N+EL+R++ + DTL Sbjct: 554 LKENGENKKVVLKDFLKFI--KDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTLD 611 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR +PS N L +L K + +S H A+ D D+ + M+ Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDILMVML 657 >gi|46202557|ref|ZP_00053013.2| COG5002: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 711 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 10/167 (5%) Query: 10 IVFDIETTGL-DSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL S+ D+I+ I V +++ + +F + P GR E+++ HGITD Sbjct: 519 VVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNP-GRSIPAESIRYHGITD 577 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + DKP + +F + +A +AHNA FD+ F+ + + P ++DT+ Sbjct: 578 EMVIDKPPAGVVLPQFRSYV--ADAVLVAHNAAFDLKFLRMREKEMGVRFDSP--VLDTM 633 Query: 128 SIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++ P + + L+ +C+RYGI I+ R H AL DS + + V ++ Sbjct: 634 ILSNFLDGPEAGHSLDDICERYGIEITDR--HTALGDSMVTAAVLLR 678 >gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342] Length = 1451 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575 >gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635] gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635] gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630] Length = 1451 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575 >gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860] gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860] Length = 1451 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575 >gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96] gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96] Length = 1439 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563 >gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583] gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22] gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis V583] gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22] gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B] gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A] Length = 1451 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575 >gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137] Length = 1451 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575 >gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855] gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855] Length = 1451 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575 >gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322] gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis TUSoD Ef11] gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322] gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis TUSoD Ef11] gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027] Length = 1451 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575 >gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200] gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8] gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98] gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis PC1.1] gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248] gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134] gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411] gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102] gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200] gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8] gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98] gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis PC1.1] gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411] gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134] gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248] gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102] gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000] gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141] gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244] gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031] gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043] gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312] gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645] gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341] gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346] gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis 62] gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF] gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467] Length = 1451 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 427 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 482 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 483 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 539 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 540 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 575 >gi|320449814|ref|YP_004201910.1| DNA polymerase III subunit epsilon [Thermus scotoductus SA-01] gi|320149983|gb|ADW21361.1| DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01] Length = 637 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 16/168 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 FD+ETTGLD + D II +GAV +L KT +VF L GR + ++HG+T E Sbjct: 455 AFDLETTGLDPEKDAIIALGAVHIL--GKTVLRHEVFEALVNPGRPIPKASTEVHGLTWE 512 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+KP + F F ++ +AHN FD+ F L+R+ +D ++DTL Sbjct: 513 MLKEKPKLEEVLPGFRLFL--EDTVLLAHNGAFDMAF----LRRVG---IDQPPLVDTLL 563 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ P ++ L +L +R+G+ + R H AL D+ + ++V+ M+ Sbjct: 564 LSYLLFPDLQDHRLETLAERFGVPVIGR--HTALGDALMTAEVFAGMV 609 >gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11] gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11] Length = 1439 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563 >gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188] gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188] Length = 1439 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563 >gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 1454 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 24/207 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL+S + IIEIGAV++ +R Q L GR ++ ITDE Sbjct: 428 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 + ++P + +F DF +A +AHNA FD+GFI ++++ +N D +IDTL Sbjct: 486 VANEPKIDEVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 541 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179 +AR P + L L K G+ + H A+ DS ++++I K + Sbjct: 542 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLDKYKEKGLEYMK 599 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLL 206 IN GF+ N +K+++ NI +L Sbjct: 600 DINVGFEVN------VKKQSLKNIMVL 620 >gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2] gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2] Length = 1439 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + D IIE+ AV++ K N TF+ F+ P G S + L GITD Sbjct: 415 VVFDVETTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGITD 470 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S + F +F + +AHNA FD+GF+N + + P + +IDTL Sbjct: 471 EMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDTL 527 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 528 ELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 563 >gi|332522391|ref|ZP_08398643.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus porcinus str. Jelinkova 176] gi|332313655|gb|EGJ26640.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus porcinus str. Jelinkova 176] Length = 1466 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 78/146 (53%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ F F+ P G S +L GITD Sbjct: 429 VVFDVETTGLSAINNDLIQIAASKMYK-GNIIEQFDEFINP-GHPLSSFTTELTGITDNH 486 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + + F F Q+A +AHNA FDVGF+NA +R + PL +IDTL Sbjct: 487 LIGAKTLLQVLEAFQAFC--QDAILVAHNASFDVGFMNANYER-HHLPLIKQPVIDTLEF 543 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 544 ARNLYPEYKRHGLGPLTKRFQVSLDH 569 >gi|15675759|ref|NP_269933.1| DNA polymerase III PolC [Streptococcus pyogenes M1 GAS] gi|81175278|sp|P0C0B8|DPO3_STRP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|13622981|gb|AAK34654.1| DNA polymerase III (alpha subunit) [Streptococcus pyogenes M1 GAS] Length = 1465 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ ++ F DF +++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568 >gi|50915026|ref|YP_060998.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10394] gi|73919253|sp|Q5X9U8|DPO3_STRP6 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|50904100|gb|AAT87815.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394] Length = 1465 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ ++ F DF +++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568 >gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium DO] gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502] gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410] gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68] gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1162] gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04] gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C] gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082] gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A] gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B] gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01] gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium DO] gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502] gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410] gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68] gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1162] gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01] gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B] gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A] gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C] gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04] gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082] Length = 1452 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 8/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ +F F+ P G S + L GITD Sbjct: 428 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDGM 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S + F +F ++ +AHNA FD+GF+N R P + +IDTL + Sbjct: 486 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPVIDTLEL 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 AR +P R L L K++G+++ HR+ + A HL Sbjct: 543 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 582 >gi|297571338|ref|YP_003697112.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum DSM 20595] gi|296931685|gb|ADH92493.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum DSM 20595] Length = 200 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+ETTGLD DRIIEIG V L D + + F + P + S A +H I+ Sbjct: 1 MTYAVVDVETTGLDLATDRIIEIGIVLLSDSLEQSGYFHSLIDP---QRSITAQHIHHIS 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIID 125 + D PSF+ + + Q +AHNA FD+GF+NAE R +D + + Sbjct: 58 SAMVADAPSFALVAERVAKVLDGQII--VAHNAPFDLGFLNAEFARAQAGISIDRANAVC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHL 166 TL +R P + L L R GI ++HR+ AL + L Sbjct: 116 TLDQSRIYCPEGSHSLIGLAARLGIETPVAHRALADALTCTEL 158 >gi|71911485|ref|YP_283035.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS5005] gi|71854267|gb|AAZ52290.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005] Length = 1465 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ ++ F DF +++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568 >gi|94989303|ref|YP_597404.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS9429] gi|94993192|ref|YP_601291.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS2096] gi|123257711|sp|Q1J9R4|DPO3_STRPB RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|123382486|sp|Q1JJW3|DPO3_STRPC RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|94542811|gb|ABF32860.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429] gi|94546700|gb|ABF36747.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096] Length = 1465 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ ++ F DF +++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568 >gi|306826600|ref|ZP_07459906.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782] gi|304431208|gb|EFM34211.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782] Length = 1465 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ ++ F DF +++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568 >gi|322411039|gb|EFY01947.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1465 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ ++ F DF +++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568 >gi|139474447|ref|YP_001129163.1| DNA polymerase III PolC [Streptococcus pyogenes str. Manfredo] gi|166217453|sp|A2RGI3|DPO3_STRPG RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|134272694|emb|CAM30965.1| DNA polymerase III PolC-type [Streptococcus pyogenes str. Manfredo] Length = 1465 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ ++ F DF +++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568 >gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium D344SRF] gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium D344SRF] Length = 1452 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 8/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ +F F+ P G S + L GITD Sbjct: 428 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDGM 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S + F +F ++ +AHNA FD+GF+N R + P + +IDTL + Sbjct: 486 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYAR-HGIPEAANPVIDTLEL 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 AR +P R L L K++G+++ HR+ + A HL Sbjct: 543 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 582 >gi|283769479|ref|ZP_06342375.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia extructa W1219] gi|283103747|gb|EFC05133.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia extructa W1219] Length = 1442 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 96/169 (56%), Gaps = 8/169 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTGL +K D +IE GAV++ + + + Q+F+ P + P + K I++E Sbjct: 394 VVFDLETTGLSAKYDYMIEFGAVKIKNGLRLDSK-QLFIKPP--ISIPAFIEKKTNISNE 450 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ SFS + E + +A +AHNA FD F+N EL+R+++ PL + +IDTL Sbjct: 451 MVRNAKSFSEVVDELLAYIG--DAVLVAHNASFDFPFLNEELRRLSRKPLT-NPVIDTLD 507 Query: 129 IARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +AR SR L + Y + S H A D+++L+D + ++V Sbjct: 508 MARAILSDRSRFALEYVSNHYKLNYSRSDAHRADYDANILADAFEHLLV 556 >gi|168184157|ref|ZP_02618821.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf] gi|182672739|gb|EDT84700.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf] Length = 855 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E+TG+++ D I++I +++ + +FQ FL P +K+ ++ +HG +D+F Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINSKGEAIESFQRFLNP--KKSVGDSYLVHGFSDQF 553 Query: 70 LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ + + +F F ++ + HN FD+ +N+EL+R++ + DTL Sbjct: 554 LKENGENKKVVLKDFLKFI--KDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTLD 611 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR +PS N L +L K + +S H A+ D D+ + M+ Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDILMVML 657 >gi|330793394|ref|XP_003284769.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum] gi|325085263|gb|EGC38673.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum] Length = 501 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 7/175 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K R I FD+ET+G S D IIEIGAVEL+D +T FQ + P + + P A ++H + Sbjct: 286 KGRVICFDLETSGF-SAEDSIIEIGAVELIDGCRTGVIFQSYAKPKAQIH-PRAEEIHQL 343 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124 + L+ P + F D+ + + IAHN FD + EL R K P D I Sbjct: 344 NNYLLQYSPPIEVMLCSFMDWVGD--SPLIAHNLSFDKRMLLQELVRY-KIPFDNDHICF 400 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMMVGG 178 T+ R+ + L+S+ ++ I + R HGAL+D+ +LS VY ++ Sbjct: 401 CTMKYFRKVYMGLNYSLDSVSQKLKINKLLLRKTHGALVDAEILSIVYTHLLTAN 455 >gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b] gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b] Length = 1459 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 89/168 (52%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTG D ND+IIEIGAV++ F F+ P P+ + +L ITDE Sbjct: 426 VVFDIETTGFDPFNDKIIEIGAVKMRGREVIGE-FSEFVNP--EIPIPQKITELTTITDE 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + ++ F +F +AHNAKFDVGFI + I++ +IDTL Sbjct: 483 MVANAEKIETVLPRFLEFCT--GTTVVAHNAKFDVGFIKQ--KTIDQGLEYSPSVIDTLP 538 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P R L +L K +GIT+ + H A+ D+ ++V+ K + Sbjct: 539 LARTLLPELRGYGLANLVKYFGITL--ETHHRAVDDAKATAEVFQKFL 584 >gi|319939893|ref|ZP_08014248.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV] gi|319810904|gb|EFW07223.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV] Length = 1464 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S L GITDE Sbjct: 427 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTDLTGITDEH 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF DF Q+ +AHNA FDVGF+N +R + P +IDTL Sbjct: 485 VKNAKPLEQVLQEFQDFC--QDTVLVAHNATFDVGFMNVNYER-HGLPRITQPVIDTLEF 541 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 542 ARNLYPEYKRHGLGPLTKRFQVSLDH 567 >gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO] Length = 663 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 8/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE+ AV++ +F F+ P G S + L GITD Sbjct: 428 VVFDVETTGLSAVYDTIIELAAVKMYK-GNVIESFDEFIDP-GHPLSRTTVDLTGITDGM 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S + F +F ++ +AHNA FD+GF+N R P + +IDTL + Sbjct: 486 VRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPVIDTLEL 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 AR +P R L L K++G+++ HR+ + A HL Sbjct: 543 ARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 582 >gi|71907264|ref|YP_284851.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] gi|71846885|gb|AAZ46381.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] Length = 721 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 10/168 (5%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL+ N D II+IGA +++ + TF + P P ++ +HGIT++ Sbjct: 533 VFDTETTGLEPSNGDEIIQIGAARIVNNRLLRQETFNQIVDPE-IPLKPASIPIHGITED 591 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +P+ + F +F ++ IAHNA FD+ F+ + +R N P ++DTL Sbjct: 592 MVRGQPNIDVVLPAFHEFC--EDTVLIAHNAAFDMRFLQLKEERTNIRFTQP--VLDTLL 647 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ HP+ + L+ + +R GITI R H AL D+ +V++K++ Sbjct: 648 LSAVVHPNQESHKLDVILERLGITIGKR--HNALEDALATGEVFLKLV 693 >gi|197301360|ref|ZP_03166441.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC 29176] gi|197299517|gb|EDY34036.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC 29176] Length = 1517 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 13/169 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFDIETTG + D+IIEIGAV++++ +R F F+ P R E L ITDE Sbjct: 482 IVFDIETTGFSAIRDKIIEIGAVKVVNGEIVDR-FSTFVNPQ-RPIPFEITNLTSITDEM 539 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127 + + ++ +F +F + +AHNA FDVGFI N Q I +DT+ Sbjct: 540 VLEADPIENVLPQFLEFVG--DGVLVAHNASFDVGFIEQNCRYQEIEYR----FTYVDTV 593 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++AR P+ S+ LN + K GI++ + H A+ D+ +++++K + Sbjct: 594 AMARVLLPTLSKYKLNLVAKTLGISLENH--HRAVDDAGATAEIFVKFV 640 >gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290] gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290] Length = 1438 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTGL + DR+IE+ AV++ + S F+ F+ P G S + L ITDE Sbjct: 420 VVFDTETTGLSAIYDRVIELSAVKMKN-SNVIDQFEEFIDP-GFHLSEQTTNLTSITDEM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S +F F DF ++A + HN FD+GF+N R + P + IIDTL++ Sbjct: 478 VHGSKSEEEVFKLFRDFC--EDAIVVGHNVTFDIGFMNTGYVR-HGMPEIKNPIIDTLTL 534 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 AR +P+ R LN+L K++ + + H H A+ D+ Sbjct: 535 ARFLYPNMRGYRLNTLAKKFDVNLEHH--HRAIYDA 568 >gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 1438 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTGL + DR+IE+ AV++ + S F+ F+ P G S + L ITDE Sbjct: 420 VVFDTETTGLSAIYDRVIELSAVKMKN-SNVIDQFEEFIDP-GFHLSEQTTNLTSITDEM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S +F F DF ++A + HN FD+GF+N R + P + IIDTL++ Sbjct: 478 VHGSKSEEEVFKLFRDFC--EDAIVVGHNVTFDIGFMNTGYVR-HGMPEIKNPIIDTLTL 534 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 AR +P+ R LN+L K++ + + H H A+ D+ Sbjct: 535 ARFLYPNMRGYRLNTLAKKFDVNLEHH--HRAIYDA 568 >gi|322375786|ref|ZP_08050297.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C300] gi|321279054|gb|EFX56096.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C300] Length = 1463 Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F +N +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KNTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|317471587|ref|ZP_07930931.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] gi|316900902|gb|EFV22872.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] Length = 1478 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 94/170 (55%), Gaps = 15/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGIT 66 +VFDIETTG +S+ DRIIEIGAV+++ + TF F+ P P K L IT Sbjct: 453 VVFDIETTGFNSQTDRIIEIGAVKVIA-GEITETFSEFINP----QIPIPFKITQLTTIT 507 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE + + + ++ F +F ++ +AHNA FD GFI+ +R++ D P+ I+DT Sbjct: 508 DEMVMNADTIDAVLPRFLEFCG--DSVLVAHNAGFDTGFIHENAKRLDLD-FHPT-IVDT 563 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L ++R ++ L++LCK I + + H A+ D+ ++IK + Sbjct: 564 LGLSRSLMTHLAKFTLDNLCKNLNIKL--ETHHRAVDDATATGKIFIKFV 611 >gi|290579638|ref|YP_003484030.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025] gi|254996537|dbj|BAH87138.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025] Length = 1470 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 10/153 (6%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKL 62 N+ +VFD+ETTGL + N+ +I+I A ++ K N F F+ P G S L Sbjct: 426 NEATYVVFDVETTGLSAINNDLIQIAASKM---HKGNIVEQFDEFIDP-GHPLSQFTTDL 481 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GITD+ +K + EF F Q+ +AHNA FDVGF+NA +R + P Sbjct: 482 TGITDQHVKGAKPILQVLQEFQSFC--QDTVLVAHNATFDVGFMNANYER-HDLPKITQP 538 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154 +IDTL AR +P R+ L L KR+ +++ H Sbjct: 539 VIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEH 571 >gi|259415529|ref|ZP_05739450.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] gi|259348759|gb|EEW60521.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] Length = 473 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 8/186 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL + D I++I A +++ F ++ P GR P + ++HG+ D Sbjct: 271 VVFDTETTGLSVETDAIVQIAAQRVMNGRLVKGEVFDAYVNP-GRAIPPASTRIHGVRDA 329 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D PS + F F ++A +AHNA FD+G + + +R D + L Sbjct: 330 DVADAPSIEQVIPAFHHF--SKDAVLVAHNAPFDIGLLRQQ-ERATGIKWDHPVLDTVLL 386 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQI-NFGF 185 A S + L++LC+R I I + +H AL D+ ++ +K+ ++ G I FG Sbjct: 387 SAVVFGISQEHSLDALCQRLAIEIPAQHRHTALGDAKATAEALVKLLPLLQGKGIETFGE 446 Query: 186 KTNEDR 191 E R Sbjct: 447 LVQETR 452 >gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577] gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577] Length = 1438 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTGL + DR+IE+ AV++ + S F+ F+ P G S + L ITDE Sbjct: 420 VVFDTETTGLSAIYDRVIELSAVKMKN-SNVIDQFEEFIDP-GFHLSEQTTNLTSITDEM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S +F F DF ++A + HN FD+GF+N R + P + IIDTL++ Sbjct: 478 VHGSKSEEEVFKLFRDFC--EDAIVVGHNVTFDIGFMNTGYVR-HGMPEIKNPIIDTLTL 534 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 AR +P+ R LN+L K++ + + H H A+ D+ Sbjct: 535 ARFLYPNMRGYRLNTLAKKFDVNLEHH--HRAIYDA 568 >gi|227498668|ref|ZP_03928812.1| DNA polymerase III [Acidaminococcus sp. D21] gi|226904124|gb|EEH90042.1| DNA polymerase III [Acidaminococcus sp. D21] Length = 225 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 81/163 (49%), Gaps = 9/163 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDE 68 +V DIETTGLD IIEIGAV + + + + R FQ FL P ++ SP L GITD Sbjct: 58 VVIDIETTGLDVARSAIIEIGAVHVRNGAVSGR-FQTFLTPEPYQSLSPFITNLTGITDS 116 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+F I DF + HN FD+ F+ + R + L+ + +DT Sbjct: 117 DLVGAPTFREILPRLRDFLG--GYTLVGHNVNFDINFLYDRIYRETGEHLN-NPYLDTKK 173 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +A+ P S L +LCK +GI +H H A+ D L V Sbjct: 174 LAKTVVPGLSHYSLEALCKHFGIAGNH---HRAVDDCELTEKV 213 >gi|46198769|ref|YP_004436.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus HB27] gi|55980782|ref|YP_144079.1| DNA polymerase III subunit epsilon-like protein [Thermus thermophilus HB8] gi|46196392|gb|AAS80809.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus HB27] gi|55772195|dbj|BAD70636.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus HB8] Length = 624 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 14/172 (8%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLH 63 +++ FD+ETTGLD + D ++ + V +L + F+ + P GR SP A +H Sbjct: 436 DQLLYTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALVNP-GRPISPAATAVH 494 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 G+T E L+DKP ++ F F Q+ +AHN FD+ F + + LD + Sbjct: 495 GLTAEMLRDKPPLEAVLPAFRAFV--QDTVLVAHNGAFDLAF-------LRRAGLDQPPL 545 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DTL +A+ P ++ L +L R+G+ + R H AL D+ + ++V+++M Sbjct: 546 LDTLLLAQLLFPDLKDYRLEALAHRFGVPATGR--HTALGDALMTAEVFVRM 595 >gi|56696683|ref|YP_167044.1| DNA polymerase III epsilon subunit family exonuclease [Ruegeria pomeroyi DSS-3] gi|56678420|gb|AAV95086.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruegeria pomeroyi DSS-3] Length = 470 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL D I++IGAV ++ R Q L GR P + ++HG++D Sbjct: 280 VFDTETTGLLPHKDEIVQIGAVRVVKGRIVPGERIDQ--LVDPGRPIPPASTRVHGVSDA 337 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + +F F ++A +AHNA FD+ F+ R D P I+DT+ Sbjct: 338 MVAGAPDIVAAARQFHQF--ARDAVIVAHNAPFDIAFLRRHGPRCGLDWDHP--ILDTVL 393 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ +S + L++LC R G+TI +H AL D+ ++V +M+ Sbjct: 394 LSAVLFGASETHTLDALCDRLGVTIPAPLRHTALGDAQATAEVLCRML 441 >gi|319950859|ref|ZP_08024742.1| DNA polymerase III [Dietzia cinnamea P4] gi|319435472|gb|EFV90709.1| DNA polymerase III [Dietzia cinnamea P4] Length = 313 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ET+G+ DR++ + AV + D + F L P P + +HG+T Sbjct: 5 VVVDVETSGMTPAVDRVLSVAAVVIGDDGEVVEEFATLLNPG---VDPGPVHVHGLTPAL 61 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 L KP FS + +E + + +AHNA FD F+ AE +R PL+ R + TL Sbjct: 62 LAGKPRFSDVAAELGRVLDGRTV--VAHNAAFDASFLAAEARRAGLAPPLE--RFVCTLD 117 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A R H S+ + L++L +G + R+ H A D+ L+ V+ ++ Sbjct: 118 FAGRLHLSTADLKLSTLAAHFG--VRQRAAHDAHDDALALAGVFAGLL 163 >gi|309799630|ref|ZP_07693854.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302] gi|308116752|gb|EFO54204.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302] Length = 681 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 427 VVFDVETTGLSAIYNDLIQVAASKMYK-GNIIAEFDEFINP-GHHLSAFTTELTGITDDH 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 485 VKNAKPLVQVLKEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKITQPVIDTLEF 541 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALEH 567 >gi|170754900|ref|YP_001781966.1| DNA polymerase III PolC [Clostridium botulinum B1 str. Okra] gi|169120112|gb|ACA43948.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum B1 str. Okra] Length = 1432 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 94/166 (56%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTG SKND+IIEIGAV+ ++ K F F+ P ++ P+ + +L ITD+ Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVK-IEKGKIVDRFSEFVNP--ERSIPDKITELTSITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DK + I F +F ++ +AHNA FD FIN + + + + ++DT++ Sbjct: 476 MVDDKEAIDKILPRFIEFIG--DSVVVAHNAAFDASFINKNCKDLKIEF--KNSVMDTVT 531 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 532 LSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] Length = 1449 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 98/189 (51%), Gaps = 18/189 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL+S + IIEIGAV++ +R Q L GR ++ ITDE Sbjct: 423 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 + ++P + + +F DF +A +AHNA FD+GFI ++++ +N D +IDTL Sbjct: 481 VANEPKINEVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--KCSVIDTLQ 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179 +AR P + L L K G+ + H A+ DS ++++I K + Sbjct: 537 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEKGLEYMK 594 Query: 180 QINFGFKTN 188 IN GF+ N Sbjct: 595 DINTGFEVN 603 >gi|229829203|ref|ZP_04455272.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM 14600] gi|229792366|gb|EEP28480.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM 14600] Length = 1532 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 86/167 (51%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG ++ DRIIEIGAV + T+R F F+ P GR +L I D+ Sbjct: 501 VVFDIETTGFSAEKDRIIEIGAVRMEGGRITDR-FSSFVNP-GRPIPFRITELTSIRDDM 558 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F F Q A +AHNA FD+GFI R++ + P+ +DT+++ Sbjct: 559 VIGSAGIEEVLPDFLAF--SQGAIMVAHNADFDMGFIRQNCLRLHLEA--PATYMDTVAM 614 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R PS N LN+L K I H H A+ D+ + ++ K + Sbjct: 615 GRYLMPSLHNQKLNTLAKALKIDPGHH--HRAVDDAEATAHIFEKFI 659 >gi|218283081|ref|ZP_03489176.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989] gi|218216150|gb|EEC89688.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989] Length = 1446 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 9/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 +VFD+ETTGL + D IIE G V++ + + R Q+F+ P ++ P + L IT Sbjct: 398 VVFDLETTGLSNTRDEIIEFGGVKIKNREEVGR-LQMFINP--KRTIPAHISNLTHITQN 454 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + E +F ++ +AHNA FDVGF+NA ++ +D L + +IDTL Sbjct: 455 DVDCAKPIEDALDELLEFIG--DSILVAHNATFDVGFMNAACRKTGRDEL-TNPVIDTLP 511 Query: 129 IARRKHP--SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ P R +L S+C+ Y ++ H A D+ +LS V MM Sbjct: 512 LSYAMLPDEQKRFNLGSVCRHYRVSYDGEGAHRADYDADVLSQVMYNMM 560 >gi|7272366|gb|AAA27192.2| polymerase III epsilon (editing) subunit [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 132 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 44/97 (45%), Positives = 59/97 (60%), Gaps = 8/97 (8%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 HGI DEFL DKP F+ + EF D+ AE + HNA Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDY--XXGAELVIHNA 100 >gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641] gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641] Length = 1463 Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPISAFTTDLTGITD 481 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +++ + EF +F Q+A +AHNA FDVGF+NA +R + P +IDTL Sbjct: 482 DHVRNAKPLKQVLEEFQEFC--QDAVLVAHNATFDVGFMNANYER-HGLPKITQPVIDTL 538 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 539 EFARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_33] gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_33] Length = 1449 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 97/189 (51%), Gaps = 18/189 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL+S + IIEIGAV++ +R Q L GR ++ ITDE Sbjct: 423 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 + ++P + +F DF +A +AHNA FD+GFI ++++ +N D +IDTL Sbjct: 481 VANEPKIDKVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179 +AR P + L L K G+ + H A+ DS ++++I K + Sbjct: 537 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEKGLEYMK 594 Query: 180 QINFGFKTN 188 IN GF+ N Sbjct: 595 DINTGFEVN 603 >gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_36A2] gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_36A2] Length = 1449 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 97/189 (51%), Gaps = 18/189 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL+S + IIEIGAV++ +R Q L GR ++ ITDE Sbjct: 423 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 + ++P + +F DF +A +AHNA FD+GFI ++++ +N D +IDTL Sbjct: 481 VANEPKIDEVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179 +AR P + L L K G+ + H A+ DS ++++I K + Sbjct: 537 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEKGLEYMK 594 Query: 180 QINFGFKTN 188 IN GF+ N Sbjct: 595 DINTGFEVN 603 >gi|78044072|ref|YP_360592.1| DNA polymerase III subunit alpha [Carboxydothermus hydrogenoformans Z-2901] gi|77996187|gb|ABB15086.1| DNA polymerase III, alpha subunit, Gram-positive type [Carboxydothermus hydrogenoformans Z-2901] Length = 1407 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD ET+GL S+ D IIEIGAV++ D + TF V + P + S + +L GIT++ Sbjct: 395 VAFDFETSGLSSQRDEIIEIGAVKIFD-GEIKETFSVLIRPQ-KPISAKISELTGITNDL 452 Query: 70 L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L K+ F +F F + + +AHNA FD GF+ L+R+ + ++D L+ Sbjct: 453 LEKEGLDFGEAIEKFLRFCD--GSILLAHNAAFDYGFLRQALKRLGHE--RKFSVVDNLA 508 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R P +N L ++ + + +S + H AL DS+ L++V++K++ Sbjct: 509 LVRILFPELKNHKLKTITEH--LEVSLNNHHRALADSYALAEVFLKLL 554 >gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1] gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1] Length = 1449 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 97/189 (51%), Gaps = 18/189 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL+S + IIEIGAV++ +R Q L GR ++ ITDE Sbjct: 423 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITDEQ 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 + ++P + +F DF +A +AHNA FD+GFI ++++ +N D +IDTL Sbjct: 481 VANEPKIDKVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179 +AR P + L L K G+ + H A+ DS ++++I K + Sbjct: 537 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEKGLEYMK 594 Query: 180 QINFGFKTN 188 IN GF+ N Sbjct: 595 DINTGFEVN 603 >gi|166240304|ref|XP_001733024.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4] gi|165988531|gb|EDR41046.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4] Length = 483 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 7/173 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K R I FD+ET+G+ S +D IIEIGAVEL+D +T FQ + P + + P + ++H + Sbjct: 298 KGRVICFDLETSGVTS-SDTIIEIGAVELIDGCRTGVIFQSYAQPKAQIH-PVSEQIHQL 355 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124 T L P I + F D+ N+ +AHN FD + EL R N P + I Sbjct: 356 TSLQLMSAPPIEIILASFMDWVG--NSPLVAHNLAFDKRILIQELIRYNI-PFNIDHICF 412 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMMV 176 T+ ++ + L+S+ ++ I + R HGAL+DS +L+ +Y +++ Sbjct: 413 CTMKYFKKIYNGLNYSLDSISQKLKINKLLLRKTHGALIDSEILAIIYTHLLI 465 >gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 1216 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 97/189 (51%), Gaps = 18/189 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL+S + IIEIGAV++ +R Q L GR ++ ITDE Sbjct: 423 VVFDIETTGLNSHTNEIIEIGAVKIKSGRIMDRYSQ--LINPGRPIPYHITEITSITDEQ 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 + ++P + +F DF +A +AHNA FD+GFI ++++ +N D +IDTL Sbjct: 481 VANEPKIDKVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179 +AR P + L L K G+ + H A+ DS ++++I K + Sbjct: 537 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEKGLEYMK 594 Query: 180 QINFGFKTN 188 IN GF+ N Sbjct: 595 DINTGFEVN 603 >gi|313673170|ref|YP_004051281.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312939926|gb|ADR19118.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 226 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 98/185 (52%), Gaps = 14/185 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTGLD +II + AV++ + K + VF+ P G+ PE++K HGITDE + Sbjct: 46 VVDTETTGLDINTAKIINLAAVKIKGF-KIIDYYNVFINP-GKSIDPESIKWHGITDEMV 103 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KDKP + EF F + + + H+ KFDV I+ EL L + +DT+ I Sbjct: 104 KDKPFVVEVMPEFVKFI--RKSVIVGHHIKFDVDMISKELMETFGCSL-KQKCLDTMFIY 160 Query: 131 RRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 R + +ND L+ L Y + + R H AL D+ ++V+ KM++ QI+ FKT Sbjct: 161 TRG-IAKKNDHVGLDFLLDLYKVRCNGR--HTALGDAMATAEVFNKMVM---QISDRFKT 214 Query: 188 NEDRF 192 D + Sbjct: 215 VRDLY 219 >gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius CECT 5713] Length = 1444 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD ETTGL ++ D++IE+ AV+ ++ TF+ F+ P G S + L ITD+ Sbjct: 427 VIFDTETTGLSAQYDKVIELAAVK-MEKGNVIDTFEEFIDP-GHPLSQTTINLTSITDDM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S +F F +F ++ + HNA FDV F+N +R N + + IDTL + Sbjct: 485 VRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW-IDTLPL 541 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR +P + LN+L K+ I + H H A+ D+ +Y M+ Sbjct: 542 ARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAML 586 >gi|303271977|ref|XP_003055350.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545] gi|226463324|gb|EEH60602.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545] Length = 1468 Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 62/185 (33%), Positives = 95/185 (51%), Gaps = 18/185 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL DRIIEI A +L D KT+ + P + + +L GIT+ Sbjct: 308 IVFDLETTGLAKLKDRIIEIAAYDLND--KTHAPMSTLVNPGRTYLTGQITRLTGITNAM 365 Query: 70 LKDK--PSF---SSIFSEFWDFFNEQNAE----WIAHNAK-FDVGFINAELQRINKDPLD 119 + + PSF + + EF D + AHNA+ FD GF+ AE RI ++ D Sbjct: 366 VSNPGVPSFVRAAELLEEFVDEARRRGGGASVILAAHNARQFDAGFLKAEYDRIQREFPD 425 Query: 120 PSRIIDTLSIARRKHPSSR----NDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKM 174 R +DTL IAR+ P + + + +L RY + + + H A D+ +L ++ ++ Sbjct: 426 DWRFVDTLPIARKLVPKTEVFGSHKMEALATRYDVKPVDGETAHRAGADARVLGEI-VEA 484 Query: 175 MVGGS 179 M+G S Sbjct: 485 MLGVS 489 >gi|21911223|ref|NP_665491.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS315] gi|28896601|ref|NP_802951.1| DNA polymerase III PolC [Streptococcus pyogenes SSI-1] gi|25452927|sp|Q8K5S8|DPO3_STRP3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|21905436|gb|AAM80294.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS315] gi|28811855|dbj|BAC64784.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes SSI-1] Length = 1465 Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ ++ F DF +++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568 >gi|94995162|ref|YP_603260.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10750] gi|123382133|sp|Q1J4M0|DPO3_STRPF RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|94548670|gb|ABF38716.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750] Length = 1465 Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ ++ F DF +++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 486 LQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLDH 568 >gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1] gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1] Length = 849 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 92/171 (53%), Gaps = 7/171 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K R ++FD+E+TGLD D +I+I A+EL++ + R+F+ F+ P+ + ++ +HG Sbjct: 492 KGRIVIFDVESTGLDVTQDEVIQIAAIELVN-GEYTRSFERFIKPS--HSVGDSALVHGF 548 Query: 66 TDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +D++L + + +F +F F + A I HN ++D+ +++++ R+ + Sbjct: 549 SDDYLNEHGEEAREVFLQFQAFV--EGALLIGHNVQYDLKIVSSQMNRLGLMFENSMGYY 606 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL I RR +P +N Y + +SH H A+ D DV +K M Sbjct: 607 DTLDIVRRLYPDLKNHKLDTVSAY-VGVSHEPTHNAMDDILATKDVLVKSM 656 >gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909] gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909] Length = 849 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 92/171 (53%), Gaps = 7/171 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K R ++FD+E+TGLD D +I+I A+EL++ + R+F+ F+ P+ + ++ +HG Sbjct: 492 KGRIVIFDVESTGLDVTQDEVIQIAAIELVN-GEYTRSFERFIKPS--HSVGDSALVHGF 548 Query: 66 TDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +D++L + + +F +F F + A I HN ++D+ +++++ R+ + Sbjct: 549 SDDYLNEHGEEAREVFLQFQAFV--EGALLIGHNVQYDLKIVSSQMNRLGLMFENSMGYY 606 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL I RR +P +N Y + +SH H A+ D DV +K M Sbjct: 607 DTLDIVRRLYPDLKNHKLDTVSAY-VGVSHEPTHNAMDDILATKDVLVKSM 656 >gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118] gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118] Length = 1444 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD ETTGL ++ D++IE+ AV+ ++ TF+ F+ P G S + L ITD+ Sbjct: 427 VIFDTETTGLSAQYDKVIELAAVK-MEKGNVIDTFEEFIDP-GHPLSQTTINLTSITDDM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S +F F +F ++ + HNA FDV F+N +R N + + IDTL + Sbjct: 485 VRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW-IDTLPL 541 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR +P + LN+L K+ I + H H A+ D+ +Y M+ Sbjct: 542 ARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAML 586 >gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1444 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD ETTGL ++ D++IE+ AV+ ++ TF+ F+ P G S + L ITD+ Sbjct: 427 VIFDTETTGLSAQYDKVIELAAVK-MEKGNVIDTFEEFIDP-GHPLSQTTINLTSITDDM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S +F F +F ++ + HNA FDV F+N +R N + + IDTL + Sbjct: 485 VRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW-IDTLPL 541 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR +P + LN+L K+ I + H H A+ D+ +Y M+ Sbjct: 542 ARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAML 586 >gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741] gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741] Length = 1451 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD ETTGL ++ D++IE+ AV+ ++ TF+ F+ P G S + L ITD+ Sbjct: 434 VIFDTETTGLSAQYDKVIELAAVK-MEKGNVIDTFEEFIDP-GHPLSQTTINLTSITDDM 491 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S +F F +F ++ + HNA FDV F+N +R N + + IDTL + Sbjct: 492 VRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMIQEPW-IDTLPL 548 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR +P + LN+L K+ I + H H A+ D+ +Y M+ Sbjct: 549 ARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAML 593 >gi|322392646|ref|ZP_08066106.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780] gi|321144638|gb|EFX40039.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780] Length = 1463 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNIIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F Q+ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLKQVLQEFQEFC--QDTVLVAHNATFDVGFMNANYER-HGLPKITQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALDH 566 >gi|320547752|ref|ZP_08042036.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812] gi|320447512|gb|EFW88271.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812] Length = 1464 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 6/151 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N+ +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G S +L G Sbjct: 422 NEATYVVFDVETTGLSAVHNDLIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTELTG 479 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD +++ + F DF ++ +AHNA FDVGF+NA +R + P +I Sbjct: 480 ITDNHVRNAKPIEQVLQMFQDFC--KDTVLVAHNATFDVGFMNANYKR-HGMPTITQPVI 536 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISH 154 DTL +AR +P R+ L L KR+ +++ H Sbjct: 537 DTLELARNLYPEYKRHGLGPLTKRFQVSLEH 567 >gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu] Length = 375 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG S RI EIG VE+ + T L G+ P +L GI+D Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEIGPLGVSTWTS---LVNPGQPIPPFIQQLTGISDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ ++ + + ++AHNA FD GF+ AE +RI +P ++ T+ + Sbjct: 73 VRDAPSFASLAPALFERLDGKL--FVAHNASFDRGFLRAEFERIGLA-FNPD-VLCTVRL 128 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+G+ S ++H AL D+ LL + ++ Sbjct: 129 SRALFPRESRHGLDALIERHGLVPS--ARHRALADADLLWQFWRQL 172 >gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599] gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599] Length = 1434 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 93/167 (55%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTGL++ IIEI AV++ ++ + L + P+ ++ GIT+E Sbjct: 422 VVFDTETTGLNASEHTIIEIAAVKMKGAEIIDQWTE--LIDPQLQIGPKTTEITGITNEM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ + + + +F DF +A +AHNA+FD FINA +RI +P + +DTL + Sbjct: 480 LRGQETLDVVLRKFKDFTG--DAILVAHNAEFDKAFINACAKRIGMEPWT-NPFLDTLPL 536 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR + RN L SL K++ + + + H AL D+ L+ V+ +M+ Sbjct: 537 ARLMYKGMRNYRLGSLAKKFNVELI--NAHRALDDTVALAHVFQQML 581 >gi|304384865|ref|ZP_07367211.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284] gi|304329059|gb|EFL96279.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284] Length = 1436 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 94/158 (59%), Gaps = 8/158 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++FD+ETTGL + D++IE+ AV++ + + + F+ F+ P G S + L IT+ Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDE-FEEFIDP-GFPLSETTINLTSITN 476 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S +F++F +F+ ++A + HN FD+GF+N R + + + IIDTL Sbjct: 477 EMVRGSLSEKEVFTKFREFY--EDAIIVGHNVTFDIGFMNTGYLRHGMEEIK-NPIIDTL 533 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 ++AR +P+ + LN+L K++ + + H H A+ D+ Sbjct: 534 TLARFLYPTLKGYRLNTLAKKFNVALEHH--HRAIYDA 569 >gi|241895743|ref|ZP_04783039.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313] gi|241870786|gb|EER74537.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313] Length = 1437 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D++IE+ AV+++ F F+ P G S + L ITD+ Sbjct: 422 VVFDVETTGLSAAYDKVIELSAVKMVK-GNVIAEFSEFIDP-GFSLSQTTVDLTSITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S +F+ F +F+ + A + HN FD+GF+N +R + + +IDTL++ Sbjct: 480 VRGSKSEKEVFTAFREFYGD--AILVGHNVTFDMGFMNEGYERHGMGSIT-NPVIDTLTL 536 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 AR +P+ R+ LN+L K +G+ + H A+ DS Sbjct: 537 ARFLYPNMRSYRLNTLAKHFGVLLEQH--HRAIFDS 570 >gi|270290316|ref|ZP_06196541.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4] gi|270281097|gb|EFA26930.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4] Length = 1436 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 94/158 (59%), Gaps = 8/158 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++FD+ETTGL + D++IE+ AV++ + + + F+ F+ P G S + L IT+ Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDE-FEEFIDP-GFPLSETTINLTSITN 476 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S +F++F +F+ ++A + HN FD+GF+N R + + + IIDTL Sbjct: 477 EMVRGSLSEKEVFTKFREFY--EDAIIVGHNVTFDIGFMNTGYLRHGMEEIK-NPIIDTL 533 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 ++AR +P+ + LN+L K++ + + H H A+ D+ Sbjct: 534 TLARFLYPTLKGYRLNTLAKKFNVALEHH--HRAIYDA 569 >gi|114319829|ref|YP_741512.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226223|gb|ABI56022.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] Length = 719 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 7/173 (4%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ +VFD ETTGL ++ D II IGAV L++ + L R A + H Sbjct: 520 DQLSCVVFDTETTGLSPARGDEIIAIGAVRLVNGRVLQDEYFEQLVKPCRAIPDSATRFH 579 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++E + P + F F E++ +AHNA FD+GF+ R P + Sbjct: 580 GISNEDVARAPEIGPVLRAFSRFIGEESV-LVAHNAAFDMGFLRRAQARAGLA--FPQPV 636 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DTL ++ H S + L + +R G+ + R H AL D+ + +DV+ +M+ Sbjct: 637 LDTLLLSVYLHDHSPDHTLEGVAERLGVEVQKR--HSALADARVTADVFARMI 687 >gi|210612665|ref|ZP_03289413.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787] gi|210151467|gb|EEA82475.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787] Length = 234 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 12/168 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGLD +ND IIEIGA+++ + T+R F FL P+ SP + GIT+E Sbjct: 6 VVFDLETTGLDVENDNIIEIGALKVREGKVTDR-FMEFLKPD-MPISPMITGITGITNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ ++ +F +F + + HN FD F+ + + + IDTL I Sbjct: 64 VKNARDTKTVIRDFVNFCEDHI--LVGHNIMFDYKFMKKYASQYGES--FEKKGIDTLKI 119 Query: 130 ARRKHPS-SRNDLNSLCKRYGI--TISHRSKHGALLDS---HLLSDVY 171 AR+ H L +LC+ Y I T +HR+ H AL + H+++ + Sbjct: 120 ARKVHKDLESKSLEALCEHYQIVNTAAHRAYHDALATAKVYHMMAHYF 167 >gi|116333947|ref|YP_795474.1| DNA polymerase III PolC [Lactobacillus brevis ATCC 367] gi|122269369|sp|Q03QS9|DPO3_LACBA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116099294|gb|ABJ64443.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus brevis ATCC 367] Length = 1445 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 89/156 (57%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D++IE+ AV+ +++ F+ F+ P G S + L ITD+ Sbjct: 426 VVFDVETTGLSAIYDKVIELSAVK-MEHQNVVDQFEEFIDP-GFPLSEQTTNLTSITDDM 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S +F F +F + A + HN FDVGF+N QR + + IIDTL++ Sbjct: 484 VAGSKSEEEVFKLFREFCGD--AIIVGHNVTFDVGFMNTGYQRHGMAEIS-NPIIDTLTL 540 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 AR +P+ ++ LN+L KR+ +++ H H A+ D+ Sbjct: 541 ARFLYPTLKSYRLNTLAKRFHVSLEHH--HRAVYDA 574 >gi|50365104|ref|YP_053529.1| DNA polymerase III alpha subunit [Mesoplasma florum L1] gi|50363660|gb|AAT75645.1| DNA polymerase III alpha subunit [Mesoplasma florum L1] Length = 1493 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 97/176 (55%), Gaps = 7/176 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 IR++KM +VFD+ETTGL + + IIE GAV + D T +L + + Sbjct: 435 IRESKM--VVFDLETTGLSPEFNEIIEFGAV-VFDPVTGKTTKYDYLFKPKQPLKQFTID 491 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L IT E L+DK + F + ++ +++ +AHNA FD F+N+ +R+ L + Sbjct: 492 LTNITPEMLEDKKNIDDDFDKIYELI--KDSILVAHNANFDFNFLNSLSKRLGYGDLQ-N 548 Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +IDTL+++R P+ ++ L ++CK++GI H D+ +L+D++ K++ Sbjct: 549 TVIDTLTLSRLVRPALKSHRLGAVCKKFGILYDEHVAHRGDYDADVLNDLFFKIIA 604 >gi|71907536|ref|YP_285123.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] gi|71847157|gb|AAZ46653.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] Length = 453 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 10/170 (5%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR + F D+ETTG + +DRI EIG VE +D + R +Q + P G + P +L GI Sbjct: 1 MRPLAFVDLETTGATATHDRITEIGIVE-VDADGSVREWQQLVNP-GMRIPPFIEQLTGI 58 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +DE + D P F +I E + +IAHNA+FD GF+ E +R+ + ++ Sbjct: 59 SDEMVADAPPFEAIAGEVMKRL--EGRLFIAHNARFDYGFLKNEFKRLGVT--FRAAVLC 114 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ ++R P R++L+SL +R+ + ++H AL D+ L+ + K+ Sbjct: 115 TVKLSRTLFPEHKRHNLDSLIERH--ELRAEARHRALADAQLIHQFWQKI 162 >gi|320332653|ref|YP_004169364.1| DNA polymerase III subunit epsilon [Deinococcus maricopensis DSM 21211] gi|319753942|gb|ADV65699.1| DNA polymerase III, epsilon subunit [Deinococcus maricopensis DSM 21211] Length = 174 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 8/172 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL-KLHG 64 M +VFD+ETTGL + D I+EIGA+ + + + TF + P ++ P + ++HG Sbjct: 1 MEYVVFDLETTGLSPERDAIVEIGAIRIRNGEVLEDDTFHTLVNPE--RDIPWYVSRVHG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + + P + F + +AHNA FD GFI A R + P R I Sbjct: 59 IRNAHVASAPRITEALPAFLQYAGTTPV--VAHNAAFDTGFIRAAAARQGLE-WRPQREI 115 Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL ++RR P + + L++L +R G+ R H A D+ L + + ++ Sbjct: 116 CTLQLSRRAFPREKSHKLDALAQRLGLLQEARGLHSAHADARLTAHAFAHLL 167 >gi|257068588|ref|YP_003154843.1| hypothetical protein Bfae_14220 [Brachybacterium faecium DSM 4810] gi|256559406|gb|ACU85253.1| exonuclease, DNA polymerase III, epsilon subunit family [Brachybacterium faecium DSM 4810] Length = 551 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 10/164 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG D D I EIGAV++ + F+ F+ P R L GITD Sbjct: 22 VVVDLETTGTDPAADAITEIGAVKVRG-GEVLGEFRTFVDPE-RPIPAYIASLTGITDAA 79 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + PS ++ F DF +A +AHNA+FD+GF++A+ P R++DTL++ Sbjct: 80 VAEAPSIRTVLPMFLDFAG--DAALVAHNARFDIGFLSAQAAACEITWPRP-RVLDTLAL 136 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 AR R+ + L++L + G I+ H AL D+ DV Sbjct: 137 ARTVFRRDEVRDHRLSTLARHVGAGIT--PDHRALSDARATVDV 178 >gi|302386245|ref|YP_003822067.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1] gi|302196873|gb|ADL04444.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1] Length = 1516 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 15/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66 +VFDIETTG S +RIIEIGAV++ + + ++ F F+ P + P E KL GI Sbjct: 493 VVFDIETTGFSSSRNRIIEIGAVKVENGTIADK-FSTFVNP----DVPIPFEIEKLTGIN 547 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + P + I F +F N+ +AHNA FDV FI R+N +P+ +IDT Sbjct: 548 DNMVLPYPKINEILPRFLEFCG--NSVLVAHNAAFDVSFIAYNAARLNL-AFEPT-VIDT 603 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++AR P+ +R L+++ K + +S + H A+ D+ +++++ + Sbjct: 604 VALARLLLPNLNRYKLDTVAK--ALVVSLENHHRAVDDAGCTAEIFVAFV 651 >gi|218282259|ref|ZP_03488558.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989] gi|218216727|gb|EEC90265.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989] Length = 525 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 8/171 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FD+ETTGLDSK DRIIE+GA+ L + T T+ + P K S EA ++ IT+ Sbjct: 51 RYVAFDVETTGLDSKKDRIIEVGAI-LFENGHTVETYSSLVNPE-VKISKEATTINHITN 108 Query: 68 EFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +K P+ + E F + + AHNA FD+ F++ L R D + Sbjct: 109 GMVKKAPTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDA--QILCL 166 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTLS++R+ P N + ++ I ++ +H A+ D+ + ++ K++ Sbjct: 167 DTLSLSRKIIPGLSNYKQTTVAKH-FNIKNKQEHRAISDAEVCGEILWKLL 216 >gi|302338443|ref|YP_003803649.1| DNA polymerase III subunit epsilon [Spirochaeta smaragdinae DSM 11293] gi|301635628|gb|ADK81055.1| DNA polymerase III, epsilon subunit [Spirochaeta smaragdinae DSM 11293] Length = 210 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/127 (40%), Positives = 68/127 (53%), Gaps = 5/127 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD ETTGLDS DRI+EIGAV KT TF + P G P + +HGITD+ Sbjct: 26 VSFDFETTGLDSFRDRILEIGAVSWRQ-GKTKETFSSLVRP-GIPVPPASTAVHGITDDD 83 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P F F + A +AHN FD GF+ + + R+ L + IDTL++ Sbjct: 84 LLDAPDEKGALVSFLRFIEGKVA--VAHNLPFDYGFLESSVDRLGLS-LGDTLFIDTLTL 140 Query: 130 ARRKHPS 136 +RR +P Sbjct: 141 SRRVYPG 147 >gi|225858122|ref|YP_002739632.1| DNA polymerase III PolC [Streptococcus pneumoniae 70585] gi|225720766|gb|ACO16620.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae 70585] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|168484148|ref|ZP_02709100.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1873-00] gi|172042563|gb|EDT50609.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1873-00] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|149006027|ref|ZP_01829756.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP18-BS74] gi|147762383|gb|EDK69344.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP18-BS74] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|298256053|ref|ZP_06979639.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502091|ref|YP_003724031.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|298237686|gb|ADI68817.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|194397447|ref|YP_002036972.1| DNA polymerase III PolC [Streptococcus pneumoniae G54] gi|194357114|gb|ACF55562.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae G54] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|168576299|ref|ZP_02722182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae MLV-016] gi|307066950|ref|YP_003875916.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200] gi|183577861|gb|EDT98389.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae MLV-016] gi|306408487|gb|ADM83914.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|332204293|gb|EGJ18358.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA47901] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|307126490|ref|YP_003878521.1| DNA polymerase III subunit alpha, Gram-positive type [Streptococcus pneumoniae 670-6B] gi|306483552|gb|ADM90421.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae 670-6B] gi|332076720|gb|EGI87182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA17545] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|225860309|ref|YP_002741818.1| DNA polymerase III PolC [Streptococcus pneumoniae Taiwan19F-14] gi|298229634|ref|ZP_06963315.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada MDR_19F] gi|225727760|gb|ACO23611.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae Taiwan19F-14] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|168493969|ref|ZP_02718112.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC3059-06] gi|183576230|gb|EDT96758.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC3059-06] gi|332077575|gb|EGI88036.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA41301] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|148988015|ref|ZP_01819478.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73] gi|147926479|gb|EDK77552.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|149011144|ref|ZP_01832449.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75] gi|147764780|gb|EDK71710.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|15902295|ref|NP_357845.1| DNA polymerase III PolC [Streptococcus pneumoniae R6] gi|116515846|ref|YP_815772.1| DNA polymerase III PolC [Streptococcus pneumoniae D39] gi|32469721|sp|Q8DRA5|DPO3_STRR6 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|122279342|sp|Q04MH6|DPO3_STRP2 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|15457800|gb|AAK99055.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae R6] gi|116076422|gb|ABJ54142.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae D39] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|15900208|ref|NP_344812.1| DNA polymerase III PolC [Streptococcus pneumoniae TIGR4] gi|111658314|ref|ZP_01409003.1| hypothetical protein SpneT_02000504 [Streptococcus pneumoniae TIGR4] gi|21263563|sp|Q97SQ2|DPO3_STRPN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|14971745|gb|AAK74452.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae TIGR4] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|332202187|gb|EGJ16256.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA41317] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|182683255|ref|YP_001835002.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14] gi|303255179|ref|ZP_07341253.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455] gi|182628589|gb|ACB89537.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14] gi|301801215|emb|CBW33889.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV200] gi|302597812|gb|EFL64884.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|126729411|ref|ZP_01745225.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Sagittula stellata E-37] gi|126710401|gb|EBA09453.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Sagittula stellata E-37] Length = 468 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 5/172 (2%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 ++ V D ETTGL D I++IGAV +++ L GR P + K+HG Sbjct: 272 GRLTYTVLDTETTGLLPHKDEIVQIGAVRIVNGRIVPGERMDQLVNPGRPIPPASSKVHG 331 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +TD + P + F F +++ +AHNA FD+ F++ R+ + P I+ Sbjct: 332 VTDAMVAGAPGIAEAGRRFHTF--ARDSVIVAHNAPFDMAFLHRHKTRMGVEWTHP--IL 387 Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+ ++ +S+ + L++LC R +TI +H AL D+ ++V+ +M+ Sbjct: 388 DTVLLSAVLFGASQTHTLDALCDRLAVTIPPNLRHTALGDAQATAEVFGRML 439 >gi|116872751|ref|YP_849532.1| DNA polymerase III PolC [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466238|sp|A0AIC1|DPO3_LISW6 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116741629|emb|CAK20753.1| DNA polymerase III [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1444 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + F ++ + +AHNA FD+GFIN +++ + D + ++DTL +A Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAD-NAVVDTLELA 544 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577 >gi|301793541|emb|CBW35916.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV104] Length = 1463 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|255284409|ref|ZP_05348964.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella formatexigens DSM 14469] gi|255265034|gb|EET58239.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella formatexigens DSM 14469] Length = 1530 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 19/172 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66 +VFD+ETTG +RIIEIGAV++ + T+R F F+ P P ++ +T Sbjct: 511 VVFDLETTGFSPTQNRIIEIGAVKVENGEITDR-FSTFVNP----QVPIPFRIEQLTSIN 565 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRII 124 D + D P+ + EF DF +A AHNA FDV FI ++R+ +D + Sbjct: 566 DNMVMDAPTIEQVLPEFLDFVG--DAVLAAHNASFDVSFIEENMRRLGLWRD----FTYV 619 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+++AR P +R L+++ K + + H H A+ D+ + +Y+K M Sbjct: 620 DTVALARVLLPQLNRFKLDTVAKALHVQLQHH--HRAVDDAECTAGIYLKFM 669 >gi|291519550|emb|CBK74771.1| DNA polymerase III catalytic subunit, PolC type [Butyrivibrio fibrisolvens 16/4] Length = 1480 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 92/168 (54%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG + KN++IIEIGAV+ D + F F+ P +L ITD+ Sbjct: 449 VVFDIETTGFNPKNNKIIEIGAVKFKDGEIVDH-FSEFINPE-VPIPYRITELTSITDDM 506 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ I +F +F + +AHNA FD FI +++ + D + +DT+ + Sbjct: 507 VLDAPTIDVILPKFMEFC--KGTVLVAHNAGFDTSFIRYNCKQLGLE-YDYTH-VDTVEV 562 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 AR HP ++R +L+++CK + H H A+ D+ + + ++ K +V Sbjct: 563 ARYLHPNNARFNLDAVCKLENVVNEHH--HRAVADAEVTAKIFEKFIV 608 >gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia goodfellowii F0264] gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia goodfellowii F0264] Length = 1438 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTGLD D+IIEIGA++L + F VF+ P + PE + L IT++ Sbjct: 413 VVFDIETTGLDPYKDKIIEIGAIKLKGKEIIDE-FSVFINP--EIDIPEEITALTNITND 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD ++ +F +F + +AHNAKFDVGFIN + + + + PS +IDTL Sbjct: 470 MVKDAEKVETVLPKFLEFCKDTTV--VAHNAKFDVGFINQKAKNLGLE-YSPS-VIDTLH 525 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P R L + + + + + H A+ D+ ++++ K + Sbjct: 526 WARILLPEQKRFGLKYIANYFNVVLDNH--HRAVDDAKATAEIFQKFL 571 >gi|225568406|ref|ZP_03777431.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM 15053] gi|225162634|gb|EEG75253.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM 15053] Length = 1487 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 93/168 (55%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 +VFD+ETTG S D+IIEIGAV+ ++ + F F+ P + P +L GITD+ Sbjct: 449 VVFDLETTGFSSIKDKIIEIGAVK-VEGGRITEKFSTFVDP--KIPIPFRITQLTGITDQ 505 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + F +F +A +AHNA FDVGFI+ + ++ P +DT++ Sbjct: 506 MVMDAPEIEAALPAFLEFAG--DAALVAHNAGFDVGFIDQNCRYMDITP--DFTAVDTVA 561 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R P+ S+ LN + K + IS + H A+ D+ ++++++ + Sbjct: 562 MSRILLPTLSKFKLNVVAK--ALNISLENHHRAVDDAGATAEIFVRFV 607 >gi|73537451|ref|YP_297818.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134] gi|72120788|gb|AAZ62974.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134] Length = 530 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 96/169 (56%), Gaps = 11/169 (6%) Query: 8 RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IVF D+ETTG D+++DRI EIG VE+ + + + L P G P +L GIT Sbjct: 30 RPIVFVDLETTGADAQHDRITEIGVVEV--GPEGIQEWDTLLDP-GVSIPPFIQRLTGIT 86 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE ++ +P+F+SI + Q ++AHNA+FD GF+ E +R + ++ T Sbjct: 87 DETVQGQPTFASIAEALAERL--QGRLFVAHNARFDYGFLKNEFRRAGLT--FRADVLCT 142 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++R PS +R+ L+++ R+ + R++H AL D+ LL + K+ Sbjct: 143 VRLSRSLFPSAARHGLDAIIARF--DLQPRARHRALADAELLWQFWQKI 189 >gi|256847046|ref|ZP_05552492.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus coleohominis 101-4-CHN] gi|256715710|gb|EEU30685.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus coleohominis 101-4-CHN] Length = 1448 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 8/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL + D++IE+ A ++ D +R F F+ P G S + +L ITD+ Sbjct: 429 VIFDVETTGLSAIYDKVIELSATKMKDGKVLDR-FDEFIDP-GFPLSEQTTELTSITDDM 486 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S +F F DF + HN FD+GF+N QR + P +IDTL + Sbjct: 487 VQGSKSEEEVFKMFQDFC--AGSIIAGHNVSFDMGFMNTGYQR-HHLPEITQPVIDTLPL 543 Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167 AR +P R LN+L K++ +++ HR+ + A HLL Sbjct: 544 ARFLYPDLRGYRLNTLSKKFKVSLEHHHRANYDAEATGHLL 584 >gi|307710886|ref|ZP_07647313.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK321] gi|307617331|gb|EFN96504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK321] Length = 1463 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPRISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|149017968|ref|ZP_01834427.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72] gi|147931532|gb|EDK82510.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72] Length = 1463 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|237649657|ref|ZP_04523909.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974] gi|237821357|ref|ZP_04597202.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974M2] Length = 1463 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|332203439|gb|EGJ17506.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA47368] Length = 1463 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|307705682|ref|ZP_07642529.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK597] gi|307620762|gb|EFN99851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK597] Length = 1463 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|306830212|ref|ZP_07463396.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249] gi|304427738|gb|EFM30834.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249] Length = 1463 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|322377559|ref|ZP_08052049.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M334] gi|321281324|gb|EFX58334.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M334] Length = 1463 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|303259383|ref|ZP_07345360.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293] gi|303261138|ref|ZP_07347087.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292] gi|303263466|ref|ZP_07349389.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397] gi|303265758|ref|ZP_07351656.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457] gi|303267811|ref|ZP_07353613.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458] gi|302637975|gb|EFL68461.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292] gi|302639317|gb|EFL69775.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293] gi|302642507|gb|EFL72852.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458] gi|302644666|gb|EFL74915.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457] gi|302647239|gb|EFL77463.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397] Length = 1463 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|148983680|ref|ZP_01816999.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|147923827|gb|EDK74939.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|301799415|emb|CBW31952.1| DNA polymerase III PolC-type [Streptococcus pneumoniae OXC141] Length = 1463 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|307707703|ref|ZP_07644182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis NCTC 12261] gi|307616201|gb|EFN95395.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis NCTC 12261] Length = 1463 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|168490797|ref|ZP_02714940.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC0288-04] gi|225853872|ref|YP_002735384.1| DNA polymerase III PolC [Streptococcus pneumoniae JJA] gi|183574875|gb|EDT95403.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC0288-04] gi|225723163|gb|ACO19016.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae JJA] Length = 1463 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|148994700|ref|ZP_01823804.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68] gi|168489751|ref|ZP_02713950.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP195] gi|147927100|gb|EDK78140.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68] gi|183571799|gb|EDT92327.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP195] gi|332075131|gb|EGI85601.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA17570] Length = 1463 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|315611914|ref|ZP_07886833.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296] gi|315316092|gb|EFU64125.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296] Length = 1463 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|270292055|ref|ZP_06198270.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M143] gi|270279583|gb|EFA25425.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M143] Length = 1463 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|221231173|ref|YP_002510325.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669] gi|220673633|emb|CAR68120.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669] Length = 1463 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|222152446|ref|YP_002561621.1| DNA polymerase III PolC [Streptococcus uberis 0140J] gi|222113257|emb|CAR40776.1| DNA polymerase III PolC-type [Streptococcus uberis 0140J] Length = 1465 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 76/146 (52%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ F F+ P G S +L GITD Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMYK-GNIIEQFDEFIDP-GHPLSAFTTELTGITDNH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + EF F + + +AHNA FD+GF+NA +R N P +IDTL Sbjct: 486 LIGAKPLLQVLEEFQAFCH--DTVLVAHNASFDIGFMNANYER-NGLPQITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH 568 >gi|332799219|ref|YP_004460718.1| DNA polymerase III subunit alpha [Tepidanaerobacter sp. Re1] gi|332696954|gb|AEE91411.1| DNA polymerase III, alpha subunit [Tepidanaerobacter sp. Re1] Length = 1422 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 95/180 (52%), Gaps = 13/180 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTGL ND IIEIGAV++L+ +R F F+ P R + L GIT++ Sbjct: 409 VVVDIETTGLCFDNDEIIEIGAVKILNNEIIDR-FSSFIKPQ-RLIPTNIINLTGITNDM 466 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LK + F +F + ++AHNA+FD GFI E ++ P + I+DTL++ Sbjct: 467 LKTARPIEKVLPSFMEFLG--DGVFVAHNAEFDSGFIRREASKLGI-PFK-NNILDTLAL 522 Query: 130 ARRKHPSSRND-LNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGG----SQIN 182 AR +N L++L K I + HR+ A + +L ++ IK+ G SQIN Sbjct: 523 ARIIFSKLKNHRLDTLAKELNIKMGSHHRAIDDAKTAALILQELLIKVNEAGINNLSQIN 582 >gi|295094742|emb|CBK83833.1| DNA polymerase III catalytic subunit, PolC type [Coprococcus sp. ART55/1] Length = 1603 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 13/169 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL K+++IIEIGAV++ D + TF F+ P G + +L I D+ Sbjct: 548 VVFDIETTGLSKKHNKIIEIGAVKVKD-GEVVDTFSEFINP-GVPIPYQIEQLTSINDDM 605 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127 +KD P F I F +F + +AHNA FD GF+ NAE + D + ++DT+ Sbjct: 606 VKDAPMFDVIVPRFVEFCGDDIV--VAHNASFDTGFVRMNAEELGLKFD----NTVLDTM 659 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++ P + L+ +CK + +H H A+ D+ + V+ K++ Sbjct: 660 TLSHILLPELGKFTLDRVCKELKVVNAHH--HRAIDDAEATAKVFFKLL 706 >gi|306824435|ref|ZP_07457781.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433222|gb|EFM36192.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 1463 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|332637692|ref|ZP_08416555.1| DNA polymerase III PolC [Weissella cibaria KACC 11862] Length = 1440 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D++IE+ AV+++ F F+ P G S + L ITD+ Sbjct: 425 VVFDVETTGLSAVYDKVIELSAVKMVK-GNVIAEFSEFIDP-GFPLSQTTVDLTSITDDM 482 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ +F EF +F+ + A + HN FD+GF+ R P+ + +IDTL + Sbjct: 483 VRGSKPEKQVFEEFREFYGD--AVLVGHNVTFDMGFMQEGYARHQLAPIT-NPVIDTLIL 539 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 AR +P+ R+ LN+L K +GI + H A+ DS Sbjct: 540 ARFLYPNMRSYRLNTLAKHFGIVLEQH--HRAIFDS 573 >gi|293364694|ref|ZP_06611411.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037] gi|307702942|ref|ZP_07639889.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus oralis ATCC 35037] gi|291316144|gb|EFE56580.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037] gi|307623335|gb|EFO02325.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus oralis ATCC 35037] Length = 1463 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|169833032|ref|YP_001693801.1| DNA polymerase III PolC [Streptococcus pneumoniae Hungary19A-6] gi|168995534|gb|ACA36146.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae Hungary19A-6] Length = 1463 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|312960549|ref|ZP_07775055.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] gi|311285075|gb|EFQ63650.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] Length = 105 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 2/91 (2%) Query: 6 KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +R +V D ETTG+ + RIIEIG VEL+ T R F V+L P+ R + A+ +HG Sbjct: 2 AIRSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPD-RDSDEGAIGVHG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI 95 ITDEFLK KP F+ + EF++F N +I Sbjct: 61 ITDEFLKGKPRFAEVADEFFEFINGAQLSFI 91 >gi|153867763|ref|ZP_01998021.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. SS] gi|152144917|gb|EDN71979.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. SS] Length = 149 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 24/150 (16%) Query: 107 NAELQRINKDPLD--PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 N EL +N+ + +I DTL++AR+ HP +N L++LCKRY + S R +HGALLD+ Sbjct: 10 NYELGLLNRQAVTHYCQKITDTLALARKCHPGQKNTLDALCKRYHVDNSTRQRHGALLDA 69 Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP------LFTRIT- 217 +L++VY+ M G + TNE N +++K+ KP + RIT Sbjct: 70 KILAEVYLAMTGGQVSLLVQRNTNESN----------NANIMKQLKPIPSQRAILVRITP 119 Query: 218 -KEELDEHDKTIQTL----GKNAIWDRYIS 242 +EEL H++ + + G +W ++++ Sbjct: 120 SEEELRAHEQCLIAIEKASGGKCLWQKFMT 149 >gi|210608497|ref|ZP_03287873.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787] gi|210152988|gb|EEA83994.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787] Length = 1269 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 15/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66 +VFDIETTG + D IIEIGAV++ + T++ + F+ P P E +L I Sbjct: 457 VVFDIETTGFSAVEDHIIEIGAVKVENGKITDK-YSTFVNP----EVPIPFEITQLTSID 511 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P I +F +F +A +AHNA FDVGFI + +N + S +DT Sbjct: 512 DSMVMDAPKIDVILPQFLEFVG--DASLVAHNAGFDVGFIEQNCKNLNIEQEFVS--VDT 567 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++AR P+ S+ LN + K + IS + H A+ D+ +++++K + Sbjct: 568 VALARVLLPTLSKYKLNIVAK--ALNISLENHHRAVDDAGATAEIFVKFV 615 >gi|149001610|ref|ZP_01826583.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69] gi|147760068|gb|EDK67057.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69] Length = 1113 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|83590002|ref|YP_430011.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC 39073] gi|83572916|gb|ABC19468.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC 39073] Length = 921 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 12/165 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGLD DRIIEI AV L+ R FQ + P GR P +L GI+D Sbjct: 7 VVLDVETTGLDPARDRIIEIAAVR-LEGGNITRQFQTLVNP-GRPIPPAIERLTGISDAM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P + D F ++A + HN FD+ F+N L PL +DTL++ Sbjct: 65 VREAPPLPEVLPGLLDLF--RDAIPVGHNGTFDLAFLNQALGHGWHSPL-----LDTLAL 117 Query: 130 ARRKHP---SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R P S R D S T HR+ L + LL +++ Sbjct: 118 SRILFPCLASHRLDYMSKYLTLEATGHHRALDDVLTTARLLENLW 162 >gi|325265145|ref|ZP_08131871.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5] gi|324029549|gb|EGB90838.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5] Length = 233 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 11/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTGL+ + + IIEIGA+++ D K F F+ P SP + L GIT+E Sbjct: 6 IAFDLETTGLNPEQNEIIEIGALKVRD-GKVQERFMEFVRPT-ENISPVVMNLTGITNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128 + D S ++ +F DF + I HN FD F+ + LD R IDTL Sbjct: 64 VADARSSRNVIPDFLDFCGDDI--LIGHNVIFDYSFVKIGAM---AEGLDFERAGIDTLK 118 Query: 129 IARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHL 166 IAR+ H + L LC Y I +HR+ H AL + L Sbjct: 119 IARKVHKDMESKSLGCLCDYYHIENNAAHRAYHDALATAKL 159 >gi|237756693|ref|ZP_04585197.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense SS-5] gi|237691145|gb|EEP60249.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense SS-5] Length = 205 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 9/167 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL+ K IIEI A+++ T + F + P+ KL GIT+ + Sbjct: 13 VVDLETTGLNPKTSEIIEIAAIKVEGNVITEK-FHTLVKPSIGFIPEHITKLTGITNPLV 71 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDTLSI 129 DKP +F F +F +N+ IAHNAKFD+ F+N A Q K +P +I TL + Sbjct: 72 IDKPKIEQVFPHFLEF--TKNSIIIAHNAKFDISFLNEASFQLTGKLIQNP--VICTLVL 127 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A R P ++ L +L Y I + KH AL D+ + +++ K + Sbjct: 128 ANRLFPDLKSKSLTNLA--YHFNIPYHRKHRALADAEVTYELFKKFV 172 >gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 1398 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 11/170 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGIT 66 + IVFD+ETTG ++ND I EIGA+++ + Q+ N + PE + KL GIT Sbjct: 381 KYIVFDLETTGFSNRNDAITEIGAIKVENGEIVEEFSQLI---NPERPIPEKIQKLTGIT 437 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + DKP+ S + +F DF +++ +AHN+ FD GF+ + N P D IDT Sbjct: 438 NEMVIDKPTISEVLPKFLDFC--KDSILVAHNSDFDTGFVREKASE-NNLPYDFDA-IDT 493 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++R P +N LN++ K + +S + H A+ D+ + +++ + Sbjct: 494 VILSRLLMPDLKNHKLNTIAKE--LNVSLENHHRAVDDATATAQIFLNFI 541 >gi|253582216|ref|ZP_04859439.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium ATCC 27725] gi|251835755|gb|EES64293.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium ATCC 27725] Length = 1446 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 10/165 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 +VFD+ET GL+S IIEIGAV+L R Q+ N +K P+ ++ L I+ + Sbjct: 421 VVFDLETMGLNSHEHEIIEIGAVKLQGTRIVERYSQLV---NPKKTIPKKIQELTNISQD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P+ + +F +F ++ +AHNA FD+GFI ++++I P+ +IDTL Sbjct: 478 MVDNMPTIEEVLPKFMEFVG--DSTMVAHNAPFDMGFIRRDVKKIMGYDYKPA-VIDTLQ 534 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +AR +P + L +L K G+++ + H A+ DS ++++I Sbjct: 535 MARDLYPELKAYGLKNLNKVLGLSLDNH--HRAVDDSQATANMFI 577 >gi|148996698|ref|ZP_01824416.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70] gi|147757273|gb|EDK64312.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70] Length = 910 Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HDLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|289167137|ref|YP_003445404.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6] gi|288906702|emb|CBJ21536.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6] Length = 1463 Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNIVAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|163815213|ref|ZP_02206590.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759] gi|158449408|gb|EDP26403.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759] Length = 1623 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 13/169 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL K+++IIEIGAV++ D + TF F+ P G + +L I D+ Sbjct: 568 VVFDIETTGLSKKHNKIIEIGAVKVKD-GEVVDTFSEFINP-GVPIPYQIEQLTSINDDM 625 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127 +KD P + I F +F + +AHNA FD GF+ NAE + D + ++DT+ Sbjct: 626 VKDAPMYDVIVPRFVEFCGDDIV--VAHNASFDTGFVKKNAEELGLRFD----NTVLDTM 679 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++ P + L+ +CK + +H H A+ D+ S V+ K++ Sbjct: 680 TLSHILLPELGKFTLDRVCKELKVVNAHH--HRAIDDAEATSKVFFKLL 726 >gi|295695291|ref|YP_003588529.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912] gi|295410893|gb|ADG05385.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912] Length = 250 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 8/169 (4%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEAL-KL 62 +++ +VFD ETTG D + D +IEIGAV + + + ++TF + + PE + ++ Sbjct: 54 DRLTYVVFDTETTGFDWRTDALIEIGAVRVENGQVREDQTFSSLIALEPGRRVPEVVRRI 113 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 G++++ L P + S F F +A +AH+A DV F+N L + L P R Sbjct: 114 TGLSEQELWRAPKVQDVLSRFMAF--SSDAVLVAHHAGHDVNFLNVPLNQFYGIEL-PRR 170 Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLS 168 ++DT +ARR P + L+ L +R I HR+ + ALL + + S Sbjct: 171 VVDTAQVARRLWPDTGEATLDYLIERMAIPPLTRHRALNDALLTARIWS 219 >gi|168485959|ref|ZP_02710467.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1087-00] gi|183570911|gb|EDT91439.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1087-00] Length = 1463 Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSVFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|315222325|ref|ZP_07864231.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211] gi|315188658|gb|EFU22367.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211] Length = 1456 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S L GITDE Sbjct: 419 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTDLTGITDEH 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF DF Q+ +AHNA FDVGF+N +R + P +IDTL Sbjct: 477 VKNAKPLEQVLQEFQDFC--QDTVLVAHNATFDVGFMNVNYER-HGLPRITQPVIDTLEF 533 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 534 ARNLYPEYKRHGLGPLTKRFQVSLDH 559 >gi|221640011|ref|YP_002526273.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131] gi|221160792|gb|ACM01772.1| DNA polymerase III, epsilon subunit precursor [Rhodobacter sphaeroides KD131] Length = 695 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 8/193 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + +VFD ETTGL D I++I AV +++ + L R P + ++ Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRSIPPSSTEV 549 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITD + + P + F F + A +AHNA FD+ F+ I + +P Sbjct: 550 HGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP-- 605 Query: 123 IIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK---MMVGG 178 I+DT+ + A S + L++L R GITI ++H A+ D+ +D ++K M+ G Sbjct: 606 ILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQGR 665 Query: 179 SQINFGFKTNEDR 191 FG +E R Sbjct: 666 GFETFGAVLSEVR 678 >gi|332559019|ref|ZP_08413341.1| putative exonuclease [Rhodobacter sphaeroides WS8N] gi|332276731|gb|EGJ22046.1| putative exonuclease [Rhodobacter sphaeroides WS8N] Length = 695 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 8/193 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + +VFD ETTGL D I++I AV +++ + L R P + ++ Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRPIPPSSTEV 549 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITD + + P + F F + A +AHNA FD+ F+ I + +P Sbjct: 550 HGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP-- 605 Query: 123 IIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK---MMVGG 178 I+DT+ + A S + L++L R GITI ++H A+ D+ +D ++K M+ G Sbjct: 606 ILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQGR 665 Query: 179 SQINFGFKTNEDR 191 FG +E R Sbjct: 666 GFETFGAVLSEVR 678 >gi|315302974|ref|ZP_07873694.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria ivanovii FSL F6-596] gi|313628654|gb|EFR97067.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria ivanovii FSL F6-596] Length = 1452 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 20/161 (12%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 438 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 495 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPLDPSRII 124 K + F EW +AHNA FD+GFIN +++ P + ++ Sbjct: 496 KGSDPIDVVLQRF--------KEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVV 546 Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 DTL +AR +P +N LN+L K++ I + H A+ D+ Sbjct: 547 DTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 585 >gi|77464143|ref|YP_353647.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1] gi|77388561|gb|ABA79746.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1] Length = 695 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 8/193 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + +VFD ETTGL D I++I AV +++ + L R P + ++ Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRPIPPSSTEV 549 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITD + + P + F F + A +AHNA FD+ F+ I + +P Sbjct: 550 HGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP-- 605 Query: 123 IIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK---MMVGG 178 I+DT+ + A S + L++L R GITI ++H A+ D+ +D ++K M+ G Sbjct: 606 ILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLLPMLQGR 665 Query: 179 SQINFGFKTNEDR 191 FG +E R Sbjct: 666 GFETFGAVLSEVR 678 >gi|327390689|gb|EGE89029.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA04375] Length = 1463 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GYPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|293115337|ref|ZP_05790986.2| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876] gi|292810483|gb|EFF69688.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876] Length = 1476 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTGL ND IIEIGAV++ + +R F F+ P + P + +L GI D Sbjct: 452 VVFDLETTGLSPVNDSIIEIGAVKIQNKKVVDR-FSTFVNP--KIPIPYNIEQLTGIDDS 508 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D + +I EF F + A +AHNA+FDV FI + + I + + ++DT+S Sbjct: 509 MVVDADTIENILPEFLKFCD--GAVMVAHNAEFDVTFIREKTKTILGKAFECT-VVDTVS 565 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +AR P+ + L+ + K +++ H H A+ D+ +D+++ ++ Sbjct: 566 LARALIPNLGKFTLDHVAKALNVSLLHH--HRAVDDAECCADIFLALVA 612 >gi|320528407|ref|ZP_08029569.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204] gi|320131321|gb|EFW23889.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204] Length = 1449 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 6/167 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTGL D IIE GAV + + + +R Q+F+ P K + IT++ Sbjct: 395 ISFDLETTGLSCYFDHIIEFGAVRIKNSTIIDRK-QLFIKPPVSIPGFITSKTN-ITNDM 452 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ F+ E D+ ++ +AHNA FD F+N EL+RI + PL + +IDTL + Sbjct: 453 VKNAKPFAEAIDEILDYI--KDDVLVAHNATFDYYFLNEELRRIGRKPL-TNVVIDTLDM 509 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R P R L +L + Y + + H A D+ L+DV++ ++ Sbjct: 510 SRAVLPDRRAYRLGNLSRYYHVNYNEEEAHRADFDAGALADVFLCLL 556 >gi|114707953|ref|ZP_01440845.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Fulvimarina pelagi HTCC2506] gi|114536582|gb|EAU39714.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Fulvimarina pelagi HTCC2506] Length = 466 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 13/170 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNG---RKNSPEALKLHGIT 66 VFD ETTGL D I++IGA+ ++D TF + P G R +S K+HGIT Sbjct: 276 VFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGGPIPRASS----KIHGIT 331 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ + +P + F++F E + +AHNA FD+ F+ + + P I+DT Sbjct: 332 DKMVMGQPRIAEAGRRFFEFSKE--SVLVAHNAPFDMSFLRRHEKAMGVAFDHP--IVDT 387 Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++ ++ R+ L+ +C+R GI I + +H AL D+ + ++ +M+ Sbjct: 388 VLVSAIIFGTTERHMLDVVCERLGIRIEKKDRHTALGDARVTAEAMKRML 437 >gi|126462986|ref|YP_001044100.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] gi|126104650|gb|ABN77328.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] Length = 695 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 8/193 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + +VFD ETTGL D I++I AV +++ + L R P + ++ Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRPIPPSSTEV 549 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITD + + P + F F + A +AHNA FD+ F+ I + +P Sbjct: 550 HGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP-- 605 Query: 123 IIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK---MMVGG 178 I+DT+ + A S + L++L R GITI ++H A+ D+ +D ++K M+ G Sbjct: 606 ILDTVLLSAVLFGQSDVHSLDALTHRIGITIPEEARHTAIGDTVATADAFLKLLPMLQGR 665 Query: 179 SQINFGFKTNEDR 191 FG +E R Sbjct: 666 GFETFGAVLSEVR 678 >gi|225856031|ref|YP_002737542.1| DNA polymerase III PolC [Streptococcus pneumoniae P1031] gi|225725805|gb|ACO21657.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae P1031] Length = 1463 Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GYPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|314981011|gb|EFT25105.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA3] gi|315093023|gb|EFT64999.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL060PA1] Length = 597 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 25/190 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G + P +++ L GITD Sbjct: 33 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--SIPASVQVLTGITDV 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRIID 125 ++ PS +++ W F+ A +AHNA+FD+GF LQR P D ++D Sbjct: 89 MVRSAPSLNAVLPS-WSEFSRSTA-LVAHNARFDIGF----LQRAYAQHDYPWDDPAVVD 142 Query: 126 TLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQ 180 TL++AR RN L++L + + T + H AL D+ DV ++ VG Sbjct: 143 TLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG--- 197 Query: 181 INFGFKTNED 190 N G T ED Sbjct: 198 -NLGVTTLED 206 >gi|99078640|ref|YP_611898.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040] gi|99035778|gb|ABF62636.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040] Length = 479 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 7/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61 R +++ +VFD ETTGL D I+E+ A +L+ + F+ ++ P GR + K Sbjct: 267 RLSELNFVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDP-GRPIPAASTK 325 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG+ D + P ++ F DF Q+A +AHNA FD+G + + + P Sbjct: 326 IHGVRDADVAQSPRIEAVIPAFHDF--AQSAVLVAHNAPFDIGLLRQQEVQTGCSWDHP- 382 Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++ S+ + L++LC R I I R +H A D+ ++ I+++ Sbjct: 383 -VVDTVLLSALVFGISADHSLDALCSRLSIEIPARHRHTAKGDARATAEALIRLL 436 >gi|314966430|gb|EFT10529.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA2] gi|315091670|gb|EFT63646.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA4] gi|327327874|gb|EGE69650.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL103PA1] Length = 590 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 25/190 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G + P +++ L GITD Sbjct: 26 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--SIPASVQVLTGITDV 81 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRIID 125 ++ PS +++ W F+ A +AHNA+FD+GF LQR P D ++D Sbjct: 82 MVRSAPSLNAVLPS-WSEFSRSTA-LVAHNARFDIGF----LQRAYAQHDYPWDDPAVVD 135 Query: 126 TLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQ 180 TL++AR RN L++L + + T + H AL D+ DV ++ VG Sbjct: 136 TLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG--- 190 Query: 181 INFGFKTNED 190 N G T ED Sbjct: 191 -NLGVTTLED 199 >gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_27] gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_27] Length = 1449 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 18/189 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL+S + IIEIGAV++ +R Q L GR ++ IT+E Sbjct: 423 VVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ--LINPGRPIPYHITEITSITNEQ 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 + ++P + +F DF +A +AHNA FD+GFI ++++ +N D +IDTL Sbjct: 481 VANEPKIDKVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKYLNIDY--QCSVIDTLQ 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI--------KMMVGGS 179 +AR P + L L K G+ + H A+ DS ++++I K + Sbjct: 537 MARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEKGLEYMK 594 Query: 180 QINFGFKTN 188 IN GF+ N Sbjct: 595 DINTGFEVN 603 >gi|313633403|gb|EFS00239.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri FSL N1-067] Length = 1452 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 12/157 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 438 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 495 Query: 71 KDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 K + F E +A+ +AHNA FD+GFIN +++ P + ++DTL Sbjct: 496 KGSDPIDVVLKR----FKEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLE 550 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 +AR +P +N LN+L K++ I + H A+ D+ Sbjct: 551 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 585 >gi|312869005|ref|ZP_07729182.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus oris PB013-T2-3] gi|311095431|gb|EFQ53698.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus oris PB013-T2-3] Length = 1444 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 8/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL + D++IE+ AV++ + R F F+ P G S + L ITDE Sbjct: 424 VIFDVETTGLSAIYDKVIELSAVKMKNGEVLAR-FDEFIDP-GFPLSEQTTNLTSITDEM 481 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + +F F DF Q HN FD+GF+N +R + + +IDTL + Sbjct: 482 VRGSKTEEEVFKMFKDFC--QGTIIAGHNVSFDMGFMNTGYRRHQMEEIT-EPVIDTLPL 538 Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167 AR +P+ R LN+L K++ + + HR+ + A HLL Sbjct: 539 ARFLYPNMRGYRLNTLSKKFKVALEHHHRANYDAEATGHLL 579 >gi|289434601|ref|YP_003464473.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170845|emb|CBH27387.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1444 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 12/157 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487 Query: 71 KDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 K + F E +A+ +AHNA FD+GFIN +++ P + ++DTL Sbjct: 488 KGSDPIDVVLKR----FKEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLE 542 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 +AR +P +N LN+L K++ I + H A+ D+ Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577 >gi|313638095|gb|EFS03362.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri FSL S4-171] Length = 1444 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 12/157 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487 Query: 71 KDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 K + F E +A+ +AHNA FD+GFIN +++ P + ++DTL Sbjct: 488 KGSDPIDVVLKR----FKEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLE 542 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 +AR +P +N LN+L K++ I + H A+ D+ Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577 >gi|325686582|gb|EGD28608.1| DNA polymerase III PolC [Streptococcus sanguinis SK72] Length = 1462 Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R N P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHNL-PKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|262283487|ref|ZP_06061253.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA] gi|262260978|gb|EEY79678.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA] Length = 1462 Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ S + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKSLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|291536049|emb|CBL09161.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis M50/1] Length = 911 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 19/172 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66 +VFD+ETTG ++IIEIGAV+++ T R F F+ P P ++ +T Sbjct: 482 VVFDLETTGFSPDKNKIIEIGAVKVVHGEITER-FSTFVNP----EVPIPYRIEELTSIR 536 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124 D+ + D P +I +F +F +A +AHNA FD+ FI N E Q I K+ II Sbjct: 537 DDMVIDAPKIETILPQFMEFCG--DAIMVAHNADFDMSFIIKNCERQGIEKE----FTII 590 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+++AR P +R L+++ K G+++ + H A+ D+ +++++K + Sbjct: 591 DTVALARILLPQLNRFKLDTVAKALGVSLENH--HRAVDDAGCTAEIFVKFV 640 >gi|282854298|ref|ZP_06263635.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139] gi|282583751|gb|EFB89131.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139] Length = 633 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 25/190 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G + P +++ L GITD Sbjct: 69 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--SIPASVQVLTGITDV 124 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRIID 125 ++ PS +++ W F+ A +AHNA+FD+GF LQR P D ++D Sbjct: 125 MVRSAPSLNAVLPS-WSEFSRSTA-LVAHNARFDIGF----LQRAYAQHDYPWDDPAVVD 178 Query: 126 TLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQ 180 TL++AR RN L++L + + T + H AL D+ DV ++ VG Sbjct: 179 TLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG--- 233 Query: 181 INFGFKTNED 190 N G T ED Sbjct: 234 -NLGVTTLED 242 >gi|307709855|ref|ZP_07646304.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK564] gi|307619404|gb|EFN98531.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK564] Length = 1463 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITDDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGLSKISQP-VIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|50842208|ref|YP_055435.1| hypothetical protein PPA0720 [Propionibacterium acnes KPA171202] gi|50839810|gb|AAT82477.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Propionibacterium acnes KPA171202] gi|314923288|gb|EFS87119.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL001PA1] gi|315107037|gb|EFT79013.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA1] Length = 633 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 25/190 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G + P +++ L GITD Sbjct: 69 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--SIPASVQVLTGITDV 124 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRIID 125 ++ PS +++ W F+ A +AHNA+FD+GF LQR P D ++D Sbjct: 125 MVRSAPSLNAVLPS-WSEFSRSTA-LVAHNARFDIGF----LQRAYAQHDYPWDDPAVVD 178 Query: 126 TLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQ 180 TL++AR RN L++L + + T + H AL D+ DV ++ VG Sbjct: 179 TLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG--- 233 Query: 181 INFGFKTNED 190 N G T ED Sbjct: 234 -NLGVTTLED 242 >gi|77920206|ref|YP_358021.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380] gi|77546289|gb|ABA89851.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380] Length = 222 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 15/190 (7%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+G+ + DR IEIGAV ++ +R FQ + P R +S GI++ Sbjct: 20 VVLDFETSGMSPVQGDRAIEIGAVRIVGGQIADR-FQSLMNPGCRISS-FIESFTGISNA 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + + + F DF +A +AHNA FD F++AELQRI++ +L Sbjct: 78 MVQAAPPATQVMAAFHDFIG--DAPLVAHNASFDRRFLDAELQRIDR--CRRQEFACSLL 133 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV------GGSQI 181 +ARR +P S N L +L G+ + H AL D+ + + ++++M G SQ+ Sbjct: 134 VARRVYPDSPNHKLATLVSYKGLP-TDGCFHRALADAEMTAHLWLRMAADLQDAYGFSQV 192 Query: 182 NFGFKTNEDR 191 F + R Sbjct: 193 PFALMSALAR 202 >gi|217964533|ref|YP_002350211.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes HCC23] gi|217333803|gb|ACK39597.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes HCC23] gi|307570901|emb|CAR84080.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes L99] Length = 1443 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 429 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 486 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL +A Sbjct: 487 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 543 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 544 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 576 >gi|315103201|gb|EFT75177.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA2] Length = 658 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 25/190 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G + P +++ L GITD Sbjct: 94 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--SIPASVQVLTGITDV 149 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRIID 125 ++ PS +++ W F+ A +AHNA+FD+GF LQR P D ++D Sbjct: 150 MVRSAPSLNAVLPS-WSEFSRSTA-LVAHNARFDIGF----LQRAYAQHDYPWDDPAVVD 203 Query: 126 TLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQ 180 TL++AR RN L++L + + T + H AL D+ DV ++ VG Sbjct: 204 TLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG--- 258 Query: 181 INFGFKTNED 190 N G T ED Sbjct: 259 -NLGVTTLED 267 >gi|16803360|ref|NP_464845.1| DNA polymerase III PolC [Listeria monocytogenes EGD-e] gi|21263551|sp|Q8Y7G1|DPO3_LISMO RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|16410736|emb|CAC99398.1| polC [Listeria monocytogenes EGD-e] Length = 1444 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL +A Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 544 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577 >gi|322388734|ref|ZP_08062331.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779] gi|321140353|gb|EFX35861.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779] Length = 1464 Score = 79.3 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GITD+ Sbjct: 427 VVFDVETTGLSAIYNDLIQVAASKMYK-GNIIAEFDEFINP-GHPLSAFTTELTGITDDH 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 485 VKNAKPLVQVLKEFQEFC--KDTVLVAHNASFDVGFMNANYER-HGLPKITQPVIDTLEF 541 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 542 ARNLYPEYKRHGLGPLTKRFGVALEH 567 >gi|224501737|ref|ZP_03670044.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-561] Length = 1444 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL +A Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 544 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577 >gi|224499902|ref|ZP_03668251.1| DNA polymerase III PolC [Listeria monocytogenes Finland 1988] Length = 1444 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL +A Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 544 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577 >gi|254828680|ref|ZP_05233367.1| polC [Listeria monocytogenes FSL N3-165] gi|254829923|ref|ZP_05234578.1| DNA polymerase III PolC [Listeria monocytogenes 10403S] gi|254898515|ref|ZP_05258439.1| DNA polymerase III PolC [Listeria monocytogenes J0161] gi|254911994|ref|ZP_05262006.1| DNA polymerase III [Listeria monocytogenes J2818] gi|254936321|ref|ZP_05268018.1| polC [Listeria monocytogenes F6900] gi|255026351|ref|ZP_05298337.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-003] gi|284801705|ref|YP_003413570.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578] gi|284994847|ref|YP_003416615.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923] gi|258601084|gb|EEW14409.1| polC [Listeria monocytogenes FSL N3-165] gi|258608911|gb|EEW21519.1| polC [Listeria monocytogenes F6900] gi|284057267|gb|ADB68208.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578] gi|284060314|gb|ADB71253.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923] gi|293589958|gb|EFF98292.1| DNA polymerase III [Listeria monocytogenes J2818] Length = 1444 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL +A Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 544 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577 >gi|240146857|ref|ZP_04745458.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] gi|257200990|gb|EEU99274.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] Length = 697 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 19/172 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66 +VFD+ETTG ++IIEIGAV+++ T R F F+ P P ++ +T Sbjct: 476 VVFDLETTGFSPDKNKIIEIGAVKVVHGEITER-FSTFVNP----EVPIPYRIEELTSIR 530 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124 D+ + D P +I +F +F +A +AHNA FD+ FI N E Q I K+ II Sbjct: 531 DDMVIDAPKIETILPQFMEFCG--DAIMVAHNADFDMSFIIKNCERQGIEKE----FTII 584 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+++AR P +R L+++ K G+++ + H A+ D+ +++++K + Sbjct: 585 DTVALARILLPQLNRFKLDTVAKALGVSLENH--HRAVDDAGCTAEIFVKFV 634 >gi|313608987|gb|EFR84729.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes FSL F2-208] Length = 1447 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 433 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 490 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL +A Sbjct: 491 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 547 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 548 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 580 >gi|16800425|ref|NP_470693.1| DNA polymerase III PolC [Listeria innocua Clip11262] gi|21263558|sp|Q92C34|DPO3_LISIN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|16413830|emb|CAC96588.1| polC [Listeria innocua Clip11262] gi|313619136|gb|EFR90925.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria innocua FSL S4-378] Length = 1444 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + +F ++ + +AHNA FD+GFIN +++ + + ++DTL +A Sbjct: 488 KGSDPIDVVLKQFREWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAK-NAVVDTLELA 544 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577 >gi|145223545|ref|YP_001134223.1| hypothetical protein Mflv_2958 [Mycobacterium gilvum PYR-GCK] gi|145216031|gb|ABP45435.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK] Length = 617 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 28/211 (13%) Query: 10 IVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +V D+ETTG + DR I EIGAV++ + F + P GR P+ + L GIT Sbjct: 23 VVVDLETTGGRASGDRHDAITEIGAVKVRG-GEVLGEFATLVDP-GRAIPPQIVALTGIT 80 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D P S+ F +F + A +AHNA FD+GF+ A +R N+ P ++ T Sbjct: 81 SAMVYDAPRIESVLPSFLEFC--RGAVLVAHNAGFDMGFLRAAAER-NQVPWPKPPVLCT 137 Query: 127 LSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGS 179 +++ARR + PS + L++L + +G + + H AL D+ DV ++ VG Sbjct: 138 VALARRVLTRDEAPSVK--LSALARLFGASTT--PTHRALDDARATVDVLHALIERVG-- 191 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 N G T + E + +P+++ +R K Sbjct: 192 --NQGVHT-----YAELRAYLPDVTPAQRRK 215 >gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158] gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158] Length = 375 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG S RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEVGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ ++ + + ++AHNA FD GF+ AE +R +P ++ T+ + Sbjct: 73 VRDAPSFASLAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGYA-FNPD-VLCTVRL 128 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P +R+ L++L +R+G+ S ++H AL D+ LL + ++ Sbjct: 129 SRALFPREARHGLDALIERHGLVPS--ARHRALADADLLWQFWRQL 172 >gi|226223921|ref|YP_002758028.1| DNA polymerase III (alpha subunit) [Listeria monocytogenes Clip81459] gi|225876383|emb|CAS05092.1| Putative DNA polymerase III (alpha subunit) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 1444 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL +A Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 544 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577 >gi|254932365|ref|ZP_05265724.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262] gi|293583921|gb|EFF95953.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262] gi|328475042|gb|EGF45830.1| DNA polymerase III PolC [Listeria monocytogenes 220] Length = 1444 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL +A Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 544 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577 >gi|329117787|ref|ZP_08246504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parauberis NCFD 2020] gi|326908192|gb|EGE55106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parauberis NCFD 2020] Length = 1465 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 74/146 (50%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ F F+ P G S +L GITD Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMYK-GNILEQFDEFIDP-GHPLSAFTTELTGITDNH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + EF F ++ +AHNA FDVGF+NA R N P +IDTL Sbjct: 486 LVGAKPLHQVLVEFQAFC--KDTVLVAHNASFDVGFMNANYARENL-PKITQPVIDTLEF 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ + + H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVALDH 568 >gi|315443891|ref|YP_004076770.1| exonuclease, DNA polymerase III subunit epsilon family [Mycobacterium sp. Spyr1] gi|315262194|gb|ADT98935.1| exonuclease, DNA polymerase III, epsilon subunit family [Mycobacterium sp. Spyr1] Length = 617 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 28/211 (13%) Query: 10 IVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +V D+ETTG + DR I EIGAV++ + F + P GR P+ + L GIT Sbjct: 23 VVVDLETTGGRASGDRHDAITEIGAVKVRG-GEVLGEFATLVDP-GRAIPPQIVALTGIT 80 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D P S+ F +F + A +AHNA FD+GF+ A +R N+ P ++ T Sbjct: 81 SAMVYDAPRIESVLPSFLEFC--RGAVLVAHNAGFDMGFLRAAAER-NQVPWPKPPVLCT 137 Query: 127 LSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGS 179 +++ARR + PS + L++L + +G + + H AL D+ DV ++ VG Sbjct: 138 VALARRVLTRDEAPSVK--LSALARLFGASTT--PTHRALDDARATVDVLHALIERVG-- 191 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 N G T + E + +P+++ +R K Sbjct: 192 --NQGVHT-----YAELRAYLPDVTPAQRRK 215 >gi|150020931|ref|YP_001306285.1| DNA polymerase III PolC [Thermosipho melanesiensis BI429] gi|149793452|gb|ABR30900.1| DNA polymerase III, alpha subunit [Thermosipho melanesiensis BI429] Length = 1362 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/121 (42%), Positives = 69/121 (57%), Gaps = 5/121 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG ++K D IIEIGAV+ D K TF F+ P + S KL GITDE + Sbjct: 346 VFDLETTGTNAKFDEIIEIGAVKYRD-GKVINTFSSFVKPT-KSISEFTQKLTGITDEMV 403 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD S +F EF F + +AHNA FD GFI +R+ LD + +DTL ++ Sbjct: 404 KDAKSIEEVFPEFLKFID--GTVLVAHNADFDYGFIREVNRRLYNKELDFAY-LDTLKLS 460 Query: 131 R 131 + Sbjct: 461 K 461 >gi|332311763|gb|EGJ24858.1| DNA polymerase III polC-type [Listeria monocytogenes str. Scott A] Length = 1457 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 443 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 500 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL +A Sbjct: 501 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 557 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 558 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 590 >gi|313665237|ref|YP_004047108.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma leachii PG50] gi|312949309|gb|ADR23905.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma leachii PG50] Length = 1480 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 5/169 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + + FD+ETTGL + D IIE GA+E + + + + P + KL I + Sbjct: 432 KMVFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPKAKLKDFTK-KLTNINE 490 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L++KP F + ++A +AHNA FD F++ Q++ L+ + IIDTL Sbjct: 491 EMLENKPGIEVAFKQINQII--KDAILVAHNANFDYTFLSHWSQKLGYGKLE-NTIIDTL 547 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +I+R +P ++ L SL KR I+ H D+ +L+D+Y +M+ Sbjct: 548 TISRIIYPELKSHRLGSLAKRVNISYDPSVAHRGDYDADILADIYERML 596 >gi|119898701|ref|YP_933914.1| DNA polymerase III epsilon subunit-like protein [Azoarcus sp. BH72] gi|119671114|emb|CAL95027.1| DNA polymerase III epsilon chain-like protein [Azoarcus sp. BH72] Length = 734 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 18/172 (10%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL+ S+ D II+IGAV +L+ + F+ + P R E+ ++HGIT + Sbjct: 546 VFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPC-RPLPEESARVHGITAD 604 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR----II 124 L +P ++ F F + +AHNA FD+ F+ K+ L R ++ Sbjct: 605 MLAGQPVIEAVLPSFHAF--AADTVLVAHNAAFDMRFLQL------KEDLTGLRFDQPVL 656 Query: 125 DTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL ++ HP+ + L ++ +R GIT+ R H AL D+ + ++V++K++ Sbjct: 657 DTLLLSAVIHPNQDSHRLEAIAERLGITVVGR--HTALGDAMVTAEVFLKLV 706 >gi|46907546|ref|YP_013935.1| DNA polymerase III PolC [Listeria monocytogenes serotype 4b str. F2365] gi|47093944|ref|ZP_00231681.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes str. 4b H7858] gi|254824621|ref|ZP_05229622.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194] gi|300765440|ref|ZP_07075422.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes FSL N1-017] gi|67460321|sp|Q720A2|DPO3_LISMF RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|46880814|gb|AAT04112.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes serotype 4b str. F2365] gi|47017682|gb|EAL08478.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes str. 4b H7858] gi|293593859|gb|EFG01620.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194] gi|300513877|gb|EFK40942.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes FSL N1-017] gi|328468603|gb|EGF39603.1| DNA polymerase III PolC [Listeria monocytogenes 1816] Length = 1444 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 430 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 487 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL +A Sbjct: 488 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 544 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 545 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 577 >gi|154484752|ref|ZP_02027200.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC 27560] gi|149734600|gb|EDM50517.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC 27560] Length = 1474 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 17/181 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KLHG 64 R +VFD+ETTG +K+D+IIEIGAV++ + +R F F+ P P KL Sbjct: 408 RYVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDR-FSTFVNP----EIPIPFRIEKLTS 462 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I DE + D P I +F +F +++ +AHN+ FD+ FI A +R +D +I Sbjct: 463 INDEMVIDAPKIEEILPQFMEFC--KDSVMVAHNSDFDMSFIEANCKR--QDLECDFTVI 518 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQI 181 DT++++R R L+++ K GI + H H A+ D+ + +++K+ M+ G I Sbjct: 519 DTVAMSRYLIIGLGRYKLDNVAKALGIVLDHH--HRAVDDAECTALIFLKLCKMLEGKGI 576 Query: 182 N 182 + Sbjct: 577 D 577 >gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM 15981] gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM 15981] Length = 1561 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 96/174 (55%), Gaps = 20/174 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66 +VFDIETTG + +RIIEIGAV++ D T++ F F+ P + P + KL I Sbjct: 539 VVFDIETTGFSPEKNRIIEIGAVKVTDGKITDK-FSTFVNP----DVPIPFDIEKLTSIN 593 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRINKDPLDPSRII 124 D + P I +F +F +A +AHNA FDVGFI AE Q + +P ++ Sbjct: 594 DAMVLPYPKIDVILPQFLEFVG--DAALVAHNASFDVGFIGHYAEKQGLAFNP----TVL 647 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMM 175 DT+++AR P+ +R L+++ K I+++ HR+ A + + + ++KM+ Sbjct: 648 DTVTMARLLLPNLNRFKLDTVAKALNISLANHHRAVDDAGCTAEIFA-AFVKML 700 >gi|258611758|ref|ZP_05711628.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503] gi|258605945|gb|EEW18553.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503] Length = 1144 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 130 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 187 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL +A Sbjct: 188 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 244 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 245 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 277 >gi|161986630|ref|YP_445565.2| hypothetical protein SRU_1441 [Salinibacter ruber DSM 13855] Length = 563 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 13/176 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D+ETTG +DRI+EIGAV++ D S +R FQ + P ++ P + K+ GIT Sbjct: 9 VVTDLETTGTTPDDDRIMEIGAVKVRDGSVVDR-FQQLVNPQ--QSVPGRITKMTGITTG 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P + ++ F + +AHN FD F++AELQR+ + L P+ + T+ Sbjct: 66 MVFEAPPADEVLPDYRAFLG--DGILVAHNVSFDGSFLDAELQRMGDETL-PNETLCTVR 122 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +ARR P L+ L + Y I + R H AL D+ S V + + SQ+ F Sbjct: 123 LARRLLPGLDSKGLSRLAQFYDIDVEGR--HRALGDAEATSVVLRRFV---SQLAF 173 >gi|323342031|ref|ZP_08082264.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464456|gb|EFY09649.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 1433 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + D IIE G V L++ + + Q F+ P + P +L ITD Sbjct: 386 VSFDLETTGLSNYYDHIIEFGGV-LIENGRVVKKMQTFIKAPVPVR--PFIQELTNITDA 442 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + PS E +F + +AHNA+FD+ FI L+RI K+P+ + +IDTL Sbjct: 443 DLVNAPSIEEAMDEILEFLGDH--VLVAHNAQFDIDFIQETLRRIGKEPIQ-NAVIDTLD 499 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R + R+ L S+ + I H A D+ +LS V+++M+ Sbjct: 500 LSRALFDNRRSYRLGSIARFMRIGYDEGVAHRADYDAEVLSLVFLEML 547 >gi|319937397|ref|ZP_08011804.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1] gi|319807763|gb|EFW04356.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1] Length = 1438 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTGL +D I E GAV++ + + R Q + PN R S + L IT+E Sbjct: 398 ISFDLETTGLSVMDDDITEFGAVKIKNGQEIGR-LQSLIKPNKRI-SQKITNLTHITNED 455 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTLS 128 +KD P+ + +FF + +AHNA FDVGF+N LQR + L +P+ ID+L+ Sbjct: 456 VKDAPTIQEYIPKILEFFGDDVI--VAHNATFDVGFLNEILQRHGYEKLKNPA--IDSLA 511 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A + P + L ++ + Y I H A D+ +L+ V+ M+ Sbjct: 512 LAWKLLPQLKGFRLGNVARYYRIAYDGDDAHRADYDAEVLAGVFNMML 559 >gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c [Mycobacterium abscessus ATCC 19977] gi|169241025|emb|CAM62053.1| Probable DNA polymerase III epsilon subunit [Mycobacterium abscessus] Length = 600 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 10/164 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG ++ND I EIGAV++ + + P R P+ ++L GIT Sbjct: 29 VVVDLETTGGSAENDAITEIGAVKVRG-GEVLGELATLVDPQ-RSLPPQIVRLTGITSAM 86 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + + F +F + A +AHNA FD+GF+ A ++ D P+ ++ T+ + Sbjct: 87 LVDAPPIAQVLPAFLEF--ARGAVLVAHNAGFDIGFLKAAARQCGIDWPQPA-VLCTVRL 143 Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ARR + + R L +L + G + + H AL D+ DV Sbjct: 144 ARRVLSRDEAPRVSLGALAQLLGASTT--PNHRALDDARATVDV 185 >gi|269302439|gb|ACZ32539.1| exonuclease, DNA polymerase III, epsilon subunit family [Chlamydophila pneumoniae LPCoLN] Length = 249 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D E TGLD K DRIIEI AV + + + + P R S E+ ++H I++ L Sbjct: 11 CLDCEMTGLDVKKDRIIEIAAVRF-TFDSVISSIEFLINPE-RVVSAESQRVHHISNAML 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D+P + +F + FF E + + H+ FD+ ++ E++RI + L IIDTL +A Sbjct: 69 RDQPKIAEVFPQIKAFFKEGDY-IVGHSVGFDLQVLSQEMERIGETFLSKYTIIDTLRLA 127 Query: 131 RRKHPSSRNDLNSLCKRYGI 150 + S N L SL + + Sbjct: 128 KEYGDSPNNSLESLAVHFNV 147 >gi|118586857|ref|ZP_01544291.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163] gi|290890494|ref|ZP_06553569.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429] gi|118432689|gb|EAV39421.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163] gi|290479890|gb|EFD88539.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429] Length = 1437 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 10/181 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 +FDIETTGL + ND+II++ AV++ + + TF F+ P G S + + L GITD+ + Sbjct: 412 IFDIETTGLSAVNDKIIQLSAVKMKNGVVLD-TFDQFINP-GFPLSEQTINLTGITDDLV 469 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129 K+ + + F F+ HN KFD GF+N L ++K P + +IDTL++ Sbjct: 470 KNSKPEAEVLKMFQQFY--AGTILAGHNVIKFDYGFVNHALA-VHKLPKINTLVIDTLNL 526 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 AR +P+ R L+ L K++ + + H H +D + + + + + ++ N+G + Sbjct: 527 ARWLYPNFGRYTLDFLSKKFSVNLEH---HHRAIDDSTATGMLLHIFLKEAEENYGVVYD 583 Query: 189 E 189 E Sbjct: 584 E 584 >gi|313905074|ref|ZP_07838444.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6] gi|313470144|gb|EFR65476.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6] Length = 1536 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 15/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGIT 66 +VFDIETTGL + +IIEIGAV +++ + F F+ P P K L IT Sbjct: 503 VVFDIETTGLSNLTCKIIEIGAVR-VEHGEVVSRFSEFINP----EVPIPFKITELTSIT 557 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D ++D P I +F +F +A +AHNA FD GFI E +R D +DT Sbjct: 558 DAMVEDAPVIEEILPKFREFCG--DAVLVAHNADFDTGFIKMECERQKLDW--EFTYVDT 613 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++A+ P SR L+++ K G+ + H H A+ D+ + +++K + Sbjct: 614 VAMAQMLLPGLSRFKLDTVAKAVGVPLEHH--HRAVDDAECTAWIFVKFV 661 >gi|189425539|ref|YP_001952716.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ] gi|189421798|gb|ACD96196.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ] Length = 168 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 9/171 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTGL +N R+IEIGAV + + T L +G S A ++HGI+ Sbjct: 3 RVIVVDTETTGLSVRNQGRVIEIGAVAVENGQITAEL--ATLINSGTPISYGAYRVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ L +P+ ++ F +F N+ +AHNA FD FIN EL + +P T Sbjct: 61 EQMLAGRPTPQEVWPWFLEFAG--NSPLVAHNAAFDRAFINHELHLLGMSLANPWHC--T 116 Query: 127 LSIARRKHPSSRND-LNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++RRK P N L ++ K +G +H AL D+ + + V+++++ Sbjct: 117 VRLSRRKLPRLMNHKLETVYKHLFGELPEEVQRHRALDDARMAARVWVELL 167 >gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] Length = 1440 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 88/159 (55%), Gaps = 13/159 (8%) Query: 10 IVFDIETT-GLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGIT 66 +VFD+ETT GL + D IIE+ AV++ K N TF+ F+ P G S + L GIT Sbjct: 415 VVFDVETTTGLSAVYDTIIELAAVKM---HKGNVIETFEQFIDP-GHPLSQTTINLTGIT 470 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE ++ S + F +F + +AHNA FD+GF+N + + P + +IDT Sbjct: 471 DEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGK-HGIPEAANPVIDT 527 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 L ++R +P ++ LN+L K++G+ + H A+ DS Sbjct: 528 LELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDS 564 >gi|171315543|ref|ZP_02904779.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] gi|171099380|gb|EDT44118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] Length = 375 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG S RI EIG VE+ + T+ + P G+ P +L GI+DE Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDEM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ ++ + + ++AHNA FD GF+ AE R +P ++ T+ + Sbjct: 73 VRDAPSFASLAPTLFERLDGKL--FVAHNASFDRGFLRAEFDRAGIA-FNPD-VLCTVRL 128 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P +R+ L++L +R+G+ + ++H AL D+ LL + ++ Sbjct: 129 SRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172 >gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469] gi|255267960|gb|EET61165.1| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469] Length = 1010 Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 90/167 (53%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG+ SK D +IEI AV+ ++ + F + P GRK P A +++GITD+ Sbjct: 26 VVFDLETTGISSKYDEVIEISAVK-VEAGQVTGEFSTLVNP-GRKIPPAASRVNGITDKM 83 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128 + FS + +F+ F + + HN FD+ F+ + ++ + D + +DTL Sbjct: 84 VAGALPFSEVLGDFFAFAGD--FVLVGHNINSFDMKFLYRDAKKYFRKVPD-NDYVDTLL 140 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR P S + L L + YG IS + H AL D H+ VY K+ Sbjct: 141 LARAALPELSHHRLVDLAEHYG--ISAKGAHRALNDCHMNQKVYGKL 185 >gi|225871273|ref|YP_002747220.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047] gi|225700677|emb|CAW95265.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047] Length = 1465 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ F F+ P G S +L GITD Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFK-GNIIEQFDEFINP-GHPLSAFTTELTGITDNH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + F F Q +AHNA FDVGF+NA R + +IDTL + Sbjct: 486 LVGAKPIQQVLEAFQAFC--QGTILVAHNASFDVGFMNANYDRYGLAKIS-QPVIDTLEL 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH 568 >gi|21684658|gb|AAL87523.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps] Length = 212 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 5/156 (3%) Query: 19 LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78 L + R+ E+G VE+ T F ++ P R A +HG+ DEFL +P+FS+ Sbjct: 1 LSPRYHRLAEVGCVEIACGRITGNYFHAYINPRQRMTR-GAQAVHGLRDEFLATQPAFSA 59 Query: 79 IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRIIDTLSIARRKHPS 136 I F + + HN FD+ F++A L P +IDT+ ++ Sbjct: 60 IAQRLLFFLCQST--LVGHNLSFDLNFLDAGLATAGFMPAARYCHGVIDTMCHLAQRGSR 117 Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 R L++ C G+ R++HGAL+D+ LL++ ++ Sbjct: 118 RRFSLDACCDMLGVRRGDRARHGALVDAVLLAEAFV 153 >gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16] gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16] Length = 528 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 11/169 (6%) Query: 8 RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IVF D+ETTG D++ DRI EIG VE+ + L P G P ++ GIT Sbjct: 28 RPIVFVDLETTGADAQRDRITEIGVVEVGPDGIIE--WDTLLDP-GMSIPPFIQRMTGIT 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E ++ +PSF S+ + Q ++AHNA+FD GF+ +R + ++ T Sbjct: 85 EEMVRGQPSFESLAESLAERL--QGRLFVAHNARFDYGFLKNAFRRAGVT--FRADVLCT 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++R PS R+ L++L R+G+T + +H AL D+ LL + K+ Sbjct: 141 VRLSRSLFPSVERHGLDALIARFGLT--PKGRHRALADAELLWQFWQKI 187 >gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis XB6B4] Length = 905 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 95/172 (55%), Gaps = 19/172 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66 +VFD+ETTG ++IIEIGAV+ +++ + F F+ P P ++ +T Sbjct: 476 VVFDLETTGFSPDKNKIIEIGAVK-VEHGEITERFSTFVNP----EVPIPYRIEELTSIR 530 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124 D+ + D P +I +F +F +A +AHNA FD+ FI N E Q I K+ II Sbjct: 531 DDMVIDAPKIETILPQFMEFCG--DAIMVAHNADFDMSFIIKNCERQGIEKE----FTII 584 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+++AR P +R L+++ K G+++ + H A+ D+ +++++K + Sbjct: 585 DTVALARILLPQLNRFKLDTVAKALGVSLENH--HRAVDDAGCTAEIFVKFV 634 >gi|225867817|ref|YP_002743765.1| DNA polymerase III PolC-type [Streptococcus equi subsp. zooepidemicus] gi|197941223|gb|ACH78331.1| DNA polymerase [Streptococcus equi subsp. zooepidemicus] gi|225701093|emb|CAW97928.1| DNA polymerase III PolC-type [Streptococcus equi subsp. zooepidemicus] Length = 1465 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ F F+ P G S +L GITD Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFK-GNIIEQFDEFINP-GHPLSAFTTELTGITDNH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + F F Q +AHNA FDVGF+NA R + +IDTL + Sbjct: 486 LVGAKPIQQVLEAFQAFC--QGTILVAHNASFDVGFMNANYDRYGLAKIS-QPVIDTLEL 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH 568 >gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168] gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168] Length = 1397 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 28/232 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL+ + IIEIGAV+ + K F F+ P G + +L GIT+E Sbjct: 386 VVFDLETTGLNKFKNEIIEIGAVK-VKSGKVIDEFSSFVKP-GESIPNKITELTGITNEM 443 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + +F +F + + +AHNA FD GF+ L++ + + ++DTL++ Sbjct: 444 VSRAPDIEGVIGDFLEFID--GSILVAHNADFDYGFLQVALKKTGQGDIS-YPVLDTLTL 500 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R P S + LN+L + + + + H A+ D+ S+++I + S I Sbjct: 501 SRALLPDLSNHKLNTLARHLNVRLDNH--HRAVEDARATSEIFINFL---SNIK------ 549 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E +TVP I+ L T+I EL + I K + D Y Sbjct: 550 -----NEGIETVPGINRLS------TKINWRELPTYHTVIFAKNKQGLKDIY 590 >gi|240142703|ref|YP_002967216.1| Protein with DNA-directed DNA polymerase-like domain [Methylobacterium extorquens AM1] gi|240012650|gb|ACS43875.1| Protein with DNA-directed DNA polymerase-like domain [Methylobacterium extorquens AM1] Length = 754 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 9/169 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTGL N DR+IE+GAVE++D + R FQ P G S + GI+ Sbjct: 543 RFVVIDFETTGLSPNNGDRVIEVGAVEIVD-GRIGRRFQSLANP-GFPVSARITAITGIS 600 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L D P + + E F + A +AHNA FD F+ AE++R+ D ++ T Sbjct: 601 NAMLVDAPPLAEVIREVSAFI--EGATLVAHNAGFDRRFLQAEMERLGL--WDDREMLCT 656 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + +R +P L L + G+ + + H AL D+ +++++ M Sbjct: 657 MRLGKRAYPGLGSYKLAFLAEHAGVALPD-AMHRALADAMATAELFLVM 704 >gi|195978859|ref|YP_002124103.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975564|gb|ACG63090.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 1465 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + N+ +I+I A ++ F F+ P G S +L GITD Sbjct: 428 VVFDVETTGLSAMNNDLIQIAASKMFK-GNIIEQFDEFINP-GHPLSAFTTELTGITDNH 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + F F Q +AHNA FDVGF+NA R + +IDTL + Sbjct: 486 LVGAKPIQQVLEAFQAFC--QGTILVAHNASFDVGFMNANYDRYGLAKIS-QPVIDTLEL 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ +++ H Sbjct: 543 ARNLYPEYKRHGLGPLTKRFQVSLEH 568 >gi|170698522|ref|ZP_02889593.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] gi|170136606|gb|EDT04863.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] Length = 375 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG S RI EIG VE+ + T+ + P G+ P +L GI+DE Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQAIPPFIQQLTGISDEM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ + + + ++AHNA FD GF+ AE +R +P ++ T+ + Sbjct: 73 VRDAPSFASLAPALVERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRL 128 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P +R+ L++L +R+G+ + ++H AL D+ LL + ++ Sbjct: 129 SRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172 >gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334] gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus casei ATCC 334] Length = 1444 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 6/152 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D++IE+ AV++ D K F+ + P G S + L ITD+ Sbjct: 422 VVFDVETTGLSAVYDKVIELAAVKMKD-GKVIDQFEEMIDP-GFPLSELTINLTHITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S +F F F + A + HN FDVGF++ +R +D + +IDTL + Sbjct: 480 VHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 536 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160 +R HP +N L++L K+Y +++ H + A Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEHHHRANA 568 >gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 1437 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 6/152 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D++IE+ AV++ D K F+ + P G S + L ITD+ Sbjct: 415 VVFDVETTGLSAVYDKVIELAAVKMKD-GKVIDQFEEMIDP-GFPLSELTINLTHITDDM 472 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S +F F F + A + HN FDVGF++ +R +D + +IDTL + Sbjct: 473 VHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 529 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160 +R HP +N L++L K+Y +++ H + A Sbjct: 530 SRMLHPERKNHKLDTLAKQYKVSLEHHHRANA 561 >gi|116491013|ref|YP_810557.1| DNA polymerase III, alpha subunit ( type) [Oenococcus oeni PSU-1] gi|116091738|gb|ABJ56892.1| DNA polymerase III, alpha subunit (gram-positive type) [Oenococcus oeni PSU-1] Length = 1437 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 10/181 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 +FDIETTGL + ND+II++ AV++ + + TF F+ P G S + + L GITD+ + Sbjct: 412 IFDIETTGLSAVNDKIIQLSAVKMKNGVVLD-TFDQFINP-GFPLSEQTINLTGITDDLV 469 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129 K+ + + F F+ HN KFD GF+N L ++K P + +IDTL++ Sbjct: 470 KNSKPEAEVLKMFQQFY--ARTILAGHNVIKFDYGFVNHALA-VHKLPKINTLVIDTLNL 526 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 AR +P+ R L+ L K++ + + H H +D + + + + + ++ N+G + Sbjct: 527 ARWLYPNFGRYTLDFLSKKFSVNLEH---HHRAIDDSTATGMLLHIFLKEAEENYGVVYD 583 Query: 189 E 189 E Sbjct: 584 E 584 >gi|21684660|gb|AAL87524.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps] Length = 201 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 5/157 (3%) Query: 19 LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78 L + R+ E+G VE+ T F ++ P R A +HG+ DEFL +P+F + Sbjct: 1 LSPRYHRLAEVGCVEIAGGRITGNYFHSYINPCQRMTR-GAQAVHGLKDEFLATQPTFGA 59 Query: 79 IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRIIDTLSIARRKHPS 136 I F A + HN FD+ F++A L P + +IDT+ ++ Sbjct: 60 IAQRLLYFLC--GAVLVGHNLTFDLNFLDAGLVSAGFMPAARYCAGVIDTMRHLAQRGSR 117 Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R L+ LC R G+ R++HGAL D+ LL++ ++ Sbjct: 118 RRFSLDDLCDRLGVRRGERARHGALEDAVLLAEAFVA 154 >gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316] gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316] Length = 1490 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 9/163 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL D+IIEIGAV++LD ++ F F+ P SP KL ITD+ Sbjct: 460 VVFDIETTGLSPTEDKIIEIGAVKMLDGVVVDK-FSEFVDPK-IPISPATTKLTTITDDM 517 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P ++ +F +F + + HN FD+ FI +R+ IDT+ + Sbjct: 518 VIGAPLIDAVVPKFVEFCG--DCVLVGHNVGFDISFIIENCRRLGIK--KEFTCIDTMGL 573 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R +P +++ L ++CK + + + H A+ D+ ++++ Sbjct: 574 SRAFYPQQAKHSLEAVCKT--LKVVNEQHHRAISDAECTAEIF 614 >gi|331701344|ref|YP_004398303.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929] gi|329128687|gb|AEB73240.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929] Length = 1439 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTGL + DR+IE+ AV++ + S F+ F+ P G S L ITDE Sbjct: 421 VVFDTETTGLSAIYDRVIELSAVKMQN-SNVIDQFEEFIDP-GFHLSERTTNLTSITDEM 478 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S +F F +F + A + HN FD+GF+N R + + IIDTL++ Sbjct: 479 VHGSKSEEEVFKLFREFCGD--AIVVGHNVTFDMGFMNTGYVRHGMHEMQ-NPIIDTLTL 535 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 AR +P+ R LN+L K++ +++ H H A+ D+ Sbjct: 536 ARFLYPNLRGYRLNTLAKKFDVSLEHH--HRAIYDA 569 >gi|291278558|ref|YP_003495393.1| hypothetical protein DEFDS_0125 [Deferribacter desulfuricans SSM1] gi|290753260|dbj|BAI79637.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 207 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 106/182 (58%), Gaps = 21/182 (11%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVEL-----LDYSKTNRTFQVFLCPNGRKNSPE 58 N++ VFDIE+TG++ DRI+EIGAV++ +DY F V + P G + Sbjct: 14 NEVEYCVFDIESTGINPFDGDRIVEIGAVKIKPGFVIDYK---NKFHVLVNP-GIPIPED 69 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + K+HGITDE + + P + F +F + +AHNA+ D+ F L+RI+K+ L Sbjct: 70 SQKIHGITDEDVANAPDECEAYYNFIEF--AKGCIPVAHNARKDMAF----LRRISKEYL 123 Query: 119 --DPSR-IIDTLSIARRKHPSSR-NDLNSLCKRYGITI-SHRSKHGALLDSHLLSDVYIK 173 +P ++DTL+++++ + SR ++L++L ++Y + I S+ +H AL D+ S ++ Sbjct: 124 IDEPFEFVLDTLALSKKVNVLSRYHNLDALIEKYNVRIKSNYKRHRALYDAEATSVIFKI 183 Query: 174 MM 175 MM Sbjct: 184 MM 185 >gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang] gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus casei str. Zhang] Length = 1444 Score = 78.2 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 6/152 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D++IE+ AV++ D K F+ + P G S + L ITD+ Sbjct: 422 VVFDVETTGLSAVYDKVIELAAVKMKD-GKVIDQFEEMIDP-GFPLSELTINLTHITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S +F F F + A + HN FDVGF++ +R +D + +IDTL + Sbjct: 480 VHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 536 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160 +R HP +N L++L K+Y +++ H + A Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEHHHRANA 568 >gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23] gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23] gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus casei LC2W] gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus casei BD-II] Length = 1444 Score = 78.2 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 6/152 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D++IE+ AV++ D K F+ + P G S + L ITD+ Sbjct: 422 VVFDVETTGLSAVYDKVIELAAVKMKD-GKVIDQFEEMIDP-GFPLSELTINLTHITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S +F F F + A + HN FDVGF++ +R +D + +IDTL + Sbjct: 480 VHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 536 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160 +R HP +N L++L K+Y +++ H + A Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEHHHRANA 568 >gi|78065586|ref|YP_368355.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383] gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383] Length = 378 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 90/163 (55%), Gaps = 18/163 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG RI EIG VE+ + T+ + P G+ P +L GI+DE Sbjct: 17 VFVDLETTGGSPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDEM 73 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIID 125 ++D PSF+S+ ++ + + ++AHNA FD GF+ AE +R N D ++ Sbjct: 74 VRDAPSFASLAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLC 125 Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 T+ ++R P +R+ L++L +R+G+ + ++H AL D+ LL Sbjct: 126 TVRLSRALFPRETRHGLDALIERHGLVPA--ARHRALADADLL 166 >gi|146341316|ref|YP_001206364.1| DNA-directed DNA polymerase [Bradyrhizobium sp. ORS278] gi|146194122|emb|CAL78141.1| hypothetical protein; putative DNA-directed DNA polymerase [Bradyrhizobium sp. ORS278] Length = 737 Score = 78.2 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTG S DRI EIGAV++ ++ + + + P R + ++L GIT++ Sbjct: 564 VVVDIETTGSWSSGDRITEIGAVKVRNHQLVEQ-WHSLINPQ-RPIPAKIVELTGITNQM 621 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D P F I F F + ++AHN FD GF+++E +R+ + P + T Sbjct: 622 VRDAPVFHEIADSFMAFMGD--GIFVAHNVNFDYGFLSSEFERLERRFRFPK--LCTCVG 677 Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIK 173 RR++P + L LC YGI + HR+ A +HLL+ + K Sbjct: 678 MRRRYPGHTSYGLGKLCAIYGIELDDHHRALCDARAAAHLLNLINTK 724 >gi|289426266|ref|ZP_06428012.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187] gi|289153431|gb|EFD02146.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187] Length = 584 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 20 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S+I + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 76 MVRSAPSLSAILPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 132 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 133 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 186 Query: 184 GFKTNED 190 G T ED Sbjct: 187 GVTTLED 193 >gi|209964314|ref|YP_002297229.1| exonuclease, putative [Rhodospirillum centenum SW] gi|209957780|gb|ACI98416.1| exonuclease, putative [Rhodospirillum centenum SW] Length = 699 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL+ S+ D ++ + V +++ T TFQ + P GR + +HGITD Sbjct: 507 VVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINP-GRAIPAASAAIHGITD 565 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P ++ F F +A +AHNA FD+ F+ + QR D ++DT+ Sbjct: 566 AMVAEAPRAEAVLPPFRAFVG--DAVLVAHNAAFDLKFLRLK-QRAAGVRFD-GPVLDTM 621 Query: 128 SIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R+ + + L+ L R GI + R H A+ DS + + +++++M Sbjct: 622 ILSRQIQGDHGEHSLDGLAARLGIGLVDR--HSAMGDSLMTAAIFLRLM 668 >gi|15618565|ref|NP_224851.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae CWL029] gi|15836187|ref|NP_300711.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138] gi|16752385|ref|NP_444644.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39] gi|33242012|ref|NP_876953.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae TW-183] gi|4376954|gb|AAD18794.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029] gi|8163364|gb|AAF73628.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila pneumoniae AR39] gi|8979027|dbj|BAA98862.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138] gi|33236522|gb|AAP98610.1| DNA polymerase III [Chlamydophila pneumoniae TW-183] Length = 249 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D E TGLD K DRIIEI AV + + + + P R S E+ ++H I++ L Sbjct: 11 CLDCEMTGLDVKKDRIIEIAAVRF-TFDSVISSIEFLINPE-RVVSAESQRVHHISNAML 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D+P + +F + FF E + + H+ FD+ + E++RI + L IIDTL +A Sbjct: 69 RDQPKIAEVFPQIKAFFKEGDY-IVGHSVGFDLQVLAQEMERIGETFLSKYTIIDTLRLA 127 Query: 131 RRKHPSSRNDLNSLCKRYGI 150 + S N L SL + + Sbjct: 128 KEYGDSPNNSLESLAVHFNV 147 >gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus fermentum 28-3-CHN] gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus fermentum 28-3-CHN] Length = 1447 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 13/169 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL + DRII++ AV++ D + F F+ P G S + L ITD+ Sbjct: 428 VIFDIETTGLSAIYDRIIQVSAVKMQDGEVLDH-FDQFIDP-GFHLSEQTTALTSITDDM 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + + F DF + + HN FD+GF+N +R + +IDTL + Sbjct: 486 VQGSKTEEEVLKLFDDFAD--GSLLAGHNVSFDMGFMNVAYERHGMGQIKQP-VIDTLPL 542 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS----HLLSDVYIK 173 AR HP R LN+L KR+ +++ H H A DS HLL+ +++K Sbjct: 543 ARFLHPDFRGYRLNTLSKRFKVSLEHH--HLASYDSEATGHLLA-IFLK 588 >gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4] gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 375 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 93/166 (56%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG RI EIG VE+ + T+ + P G+ P +L GI+D+ Sbjct: 16 VFVDLETTGGSPAEHRITEIGVVEIGPGHMS--TWTTLVNP-GQPIPPFIQQLTGISDDM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ ++ + + ++AHNA FD GF+ AE +R +P ++ T+ + Sbjct: 73 VRDAPSFASLAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGLA-FNPD-VLCTVKL 128 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +RYG+ + ++H AL D+ L+ + ++ Sbjct: 129 SRALFPRESRHGLDALIERYGLVPA--ARHRALADADLIWQFWRQL 172 >gi|260589219|ref|ZP_05855132.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] gi|260540300|gb|EEX20869.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] Length = 1487 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 15/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGIT 66 +VFDIETTG + D+IIEIGAV++ + T R F F+ P P + L I Sbjct: 464 VVFDIETTGFSALKDKIIEIGAVKVENGRITER-FSEFVNP----QIPIPFRIEELTSIN 518 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P+ I +F F + +AHNA+FD+ FI + I + D ++DT Sbjct: 519 DNMVADAPTIDVILPKFEKFC--EGCVMVAHNAEFDMSFIRKNYEDIGIERED--TVVDT 574 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +AR P +R L+++ K G+++ H H A+ D+ +D+++K + Sbjct: 575 VGMARFLLPQLNRFKLDTVAKAVGVSLEHH--HRAVDDASCTADIFVKFI 622 >gi|291521660|emb|CBK79953.1| exonuclease, DNA polymerase III, epsilon subunit family [Coprococcus catus GD/7] Length = 245 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 24/193 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL D IIEIGA++++ +R F F+ P+ +K + + +L GITD+ Sbjct: 6 VVFDLETTGLSPDKDTIIEIGALKVIQGKVADR-FSEFINPH-QKLTQQISELTGITDDM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + + +F DF ++ + HN FD F ++ + P + IDTL I Sbjct: 64 LAGARNLQVVVGDFVDFC--EDYVVVGHNLGFDYRFTKMAAEKYHL-PFEHEG-IDTLKI 119 Query: 130 ARRKH---PSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 A+ H PS L +LC+ YGI + +HR+ H AL + L + Sbjct: 120 AKTVHKDLPS--RSLGALCEHYGIINSSAHRAYHDALATAKLY-----------QTLAHY 166 Query: 185 FKTNEDRFFKEEK 197 F+T+E + F EK Sbjct: 167 FETSEPKLFVPEK 179 >gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] Length = 684 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 17/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL DR+IE+ V E+LD TFQ + P R+ P ++ G Sbjct: 102 VVVDTETTGLRPGPDRVIEVAGVRMRNGEILD------TFQSLVHPE-RRIPPFIVRFTG 154 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ E L D P I +F F + A + HN FDV F+ E Q + P P + Sbjct: 155 ISPEMLADAPKARDIMPDFLRFI--EGATLVGHNLSFDVNFLTHEAQLLGL-PF-PVEGL 210 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+ ++RR P + + +Y + I ++H AL D+ + +DV+ +++ Sbjct: 211 DTILLSRRLLPGLKRFKLDMVAQY-LQIQTHNRHRALGDAQVTADVFARLL 260 >gi|154500376|ref|ZP_02038414.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC 29799] gi|150270881|gb|EDM98164.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC 29799] Length = 1390 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 6/126 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FDIETTGLD++ D IIEIGAV +L + TF F+ P GR S E ++L ITD+ Sbjct: 370 VCFDIETTGLDNRRDVIIEIGAV-ILRNGEIAETFDTFVSP-GRPLSREIVELTSITDKM 427 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ PS F +F ++ AHNA+FD+GFI AE R P + + IDTL + Sbjct: 428 LEGAPSQEEAIRAFLEFAGDR--PLAAHNAEFDMGFI-AEGCRRYGIPFEKTS-IDTLIL 483 Query: 130 ARRKHP 135 A+ P Sbjct: 484 AQNLLP 489 >gi|331082627|ref|ZP_08331750.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] gi|330400246|gb|EGG79888.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] Length = 1487 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 15/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGIT 66 +VFDIETTG + D+IIEIGAV++ + T R F F+ P P + L I Sbjct: 464 VVFDIETTGFSALKDKIIEIGAVKVENGRITER-FSEFVNP----QIPIPFRIEELTSIN 518 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P+ I +F F + +AHNA+FD+ FI + I + D ++DT Sbjct: 519 DNMVADAPTIDVILPKFEKFC--EGCVMVAHNAEFDMSFIRKNYEDIGIERED--TVVDT 574 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +AR P +R L+++ K G+++ H H A+ D+ +D+++K + Sbjct: 575 VGMARFLLPQLNRFKLDTVAKAVGVSLEHH--HRAVDDASCTADIFVKFI 622 >gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 1447 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 13/169 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL + DRII++ AV++ D + F F+ P G S + L ITD+ Sbjct: 428 VIFDIETTGLSAIYDRIIQVSAVKMQDGEVLDH-FDQFIDP-GFHLSEQTTALTSITDDM 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + + F DF + + HN FD+GF+N +R + +IDTL + Sbjct: 486 VQGSKTEEEVLKLFDDFAD--GSLLAGHNVSFDMGFMNVAYERHGMGQIKQP-VIDTLPL 542 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS----HLLSDVYIK 173 AR HP R LN+L KR+ +++ H H A DS HLL+ +++K Sbjct: 543 ARFLHPDFRGYRLNTLSKRFKVSLEHH--HLASYDSEATGHLLA-IFLK 588 >gi|184155198|ref|YP_001843538.1| DNA polymerase III PolC [Lactobacillus fermentum IFO 3956] gi|183226542|dbj|BAG27058.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus fermentum IFO 3956] Length = 1447 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 13/169 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL + DRII++ AV++ D + F F+ P G S + L ITD+ Sbjct: 428 VIFDIETTGLSAIYDRIIQVSAVKMQDGEVLDH-FDQFIDP-GFHLSEQTTALTSITDDM 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + + F DF + + HN FD+GF+N +R + +IDTL + Sbjct: 486 VQGSKTEEEVLKLFDDFAD--GSLLAGHNVSFDMGFMNVAYERHGMGQIKQP-VIDTLPL 542 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS----HLLSDVYIK 173 AR HP R LN+L KR+ +++ H H A DS HLL+ +++K Sbjct: 543 ARFLHPDFRGYRLNTLSKRFKVSLEHH--HLASYDSEATGHLLA-IFLK 588 >gi|313791823|gb|EFS39934.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA1] Length = 597 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 33 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 89 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 145 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 146 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 199 Query: 184 GFKTNED 190 G T ED Sbjct: 200 GVTTLED 206 >gi|153954051|ref|YP_001394816.1| DNA polymerase III PolC [Clostridium kluyveri DSM 555] gi|219854664|ref|YP_002471786.1| hypothetical protein CKR_1321 [Clostridium kluyveri NBRC 12016] gi|146346932|gb|EDK33468.1| PolC [Clostridium kluyveri DSM 555] gi|219568388|dbj|BAH06372.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1439 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 9/165 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTG ND IIEIGA+++ + K F F+ P R +L GITDE Sbjct: 427 VIFDIETTGFSMTNDNIIEIGAIKIKE-GKVVGKFSEFVNPE-RPIPLTITQLTGITDEM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ S I +F +F + N+ +AHNA FDVGFI +N +P ++DT+ + Sbjct: 485 VQNCESIKYILPKFMEFID--NSVVVAHNANFDVGFIKKNCMELNLKFKNP--VMDTIPL 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P R LN + K + IS + H A+ D+ ++ ++ Sbjct: 541 CKFLFPELKRFKLNVVAKH--LDISLENHHRAVDDAGATCEILLR 583 >gi|313818253|gb|EFS55967.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA2] Length = 597 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 33 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 89 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 145 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 146 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 199 Query: 184 GFKTNED 190 G T ED Sbjct: 200 GVTTLED 206 >gi|313815838|gb|EFS53552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA1] gi|314931784|gb|EFS95615.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL067PA1] gi|314956043|gb|EFT00441.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA1] gi|314958449|gb|EFT02552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA1] gi|314976217|gb|EFT20312.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL045PA1] gi|315088618|gb|EFT60594.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA1] gi|327451091|gb|EGE97745.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA3] gi|328753779|gb|EGF67395.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL020PA1] gi|328760388|gb|EGF73957.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL099PA1] Length = 590 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 26 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 81 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 82 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 138 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 139 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 192 Query: 184 GFKTNED 190 G T ED Sbjct: 193 GVTTLED 199 >gi|94312850|ref|YP_586059.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34] gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans CH34] Length = 530 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 11/169 (6%) Query: 8 RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IVF D+ETTG D++ DRI EIG VE+ + + + P P L GIT Sbjct: 33 RPIVFVDLETTGADAQRDRITEIGVVEV--GPDGIQEWDTLVDPL-TSIPPFVQGLTGIT 89 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE ++ +P+F+ I + Q ++AHNA+FD GF+ E +R + ++ T Sbjct: 90 DEMVRGQPTFALIAEALAEKL--QGRLFVAHNARFDYGFLKNEFRRAGVT--FRADVLCT 145 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L ++R PS R+ L++L R+G+T + +H AL D+ LL + K+ Sbjct: 146 LRLSRSLFPSVERHGLDALIARFGLT--PKGRHRALADAELLWQFWQKI 192 >gi|115350920|ref|YP_772759.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD] gi|115280908|gb|ABI86425.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] Length = 375 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 94/166 (56%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG S RI EIG VE+ + T+ + P G+ P +L GI+D+ Sbjct: 16 VFVDLETTGGSSAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDDM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ ++ + + ++AHNA FD GF+ AE +R +P ++ T+ + Sbjct: 73 VRDAPSFASLAPTLFERLDGKL--FVAHNASFDRGFLRAEFERAGI-AFNPD-VLCTVRL 128 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P +R+ L++L +R+G+ + ++H AL D+ LL + ++ Sbjct: 129 SRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172 >gi|328944876|gb|EGG39036.1| DNA polymerase III PolC [Streptococcus sanguinis SK1087] Length = 1462 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|323350531|ref|ZP_08086193.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66] gi|322123213|gb|EFX94898.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66] Length = 1462 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|313809712|gb|EFS47433.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA1] gi|314915265|gb|EFS79096.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA4] gi|314978176|gb|EFT22270.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA2] gi|314983574|gb|EFT27666.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA1] gi|315098227|gb|EFT70203.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA2] gi|327330574|gb|EGE72320.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL097PA1] gi|327442625|gb|EGE89279.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA2] gi|327445348|gb|EGE92002.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA2] Length = 597 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 33 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 89 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 145 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 146 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 199 Query: 184 GFKTNED 190 G T ED Sbjct: 200 GVTTLED 206 >gi|314987763|gb|EFT31854.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA2] Length = 587 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 23 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 79 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 135 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 136 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 189 Query: 184 GFKTNED 190 G T ED Sbjct: 190 GVTTLED 196 >gi|294507448|ref|YP_003571506.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8] gi|294343776|emb|CBH24554.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8] Length = 563 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 13/176 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D+ETTG +DRI+EIGAV++ D + +R FQ + P ++ P + K+ GIT Sbjct: 9 VVTDLETTGTTPDDDRIMEIGAVKVRDGAVVDR-FQQLVNPQ--QSVPGRITKMTGITTG 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P + ++ F + +AHN FD F++AELQR+ + L P+ + T+ Sbjct: 66 MVFEAPPADEVLPDYRAFLG--DGILVAHNVSFDGSFLDAELQRMGDETL-PNETLCTVR 122 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +ARR P L+ L + Y I + R H AL D+ S V + + SQ+ F Sbjct: 123 LARRLLPGLDSKGLSRLAQFYDIDVEGR--HRALGDAEATSVVLRRFV---SQLAF 173 >gi|315282169|ref|ZP_07870636.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria marthii FSL S4-120] gi|313614186|gb|EFR87863.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria marthii FSL S4-120] Length = 1367 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 429 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 486 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL +A Sbjct: 487 KGSDPIDVVLKRFKEWSGDDIL--VAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELA 543 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 544 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 576 >gi|289426896|ref|ZP_06428622.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165] gi|295130296|ref|YP_003580959.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Propionibacterium acnes SK137] gi|289159985|gb|EFD08163.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165] gi|291376452|gb|ADE00307.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Propionibacterium acnes SK137] gi|313772552|gb|EFS38518.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL074PA1] gi|313802090|gb|EFS43322.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA2] gi|313838422|gb|EFS76136.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL086PA1] gi|314918505|gb|EFS82336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA1] gi|314925502|gb|EFS89333.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA3] gi|314963121|gb|EFT07221.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA1] gi|314973624|gb|EFT17720.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA1] gi|315077585|gb|EFT49643.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA2] gi|315084628|gb|EFT56604.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA2] gi|327447777|gb|EGE94431.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA1] gi|327453554|gb|EGF00209.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA2] Length = 584 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 20 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 76 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 132 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 133 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 186 Query: 184 GFKTNED 190 G T ED Sbjct: 187 GVTTLED 193 >gi|332365112|gb|EGJ42875.1| DNA polymerase III PolC [Streptococcus sanguinis SK1059] Length = 1462 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|332359305|gb|EGJ37126.1| DNA polymerase III PolC [Streptococcus sanguinis SK49] Length = 1462 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|327472427|gb|EGF17858.1| DNA polymerase III PolC [Streptococcus sanguinis SK408] Length = 1462 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|327460706|gb|EGF07041.1| DNA polymerase III PolC [Streptococcus sanguinis SK1] Length = 1462 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|325695495|gb|EGD37395.1| DNA polymerase III PolC [Streptococcus sanguinis SK150] Length = 1462 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|325688979|gb|EGD30987.1| DNA polymerase III PolC [Streptococcus sanguinis SK115] Length = 1462 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|324992474|gb|EGC24395.1| DNA polymerase III PolC [Streptococcus sanguinis SK405] gi|324995996|gb|EGC27907.1| DNA polymerase III PolC [Streptococcus sanguinis SK678] gi|327488780|gb|EGF20579.1| DNA polymerase III PolC [Streptococcus sanguinis SK1058] Length = 1462 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|315080369|gb|EFT52345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL078PA1] Length = 597 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 33 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 89 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 145 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 146 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 199 Query: 184 GFKTNED 190 G T ED Sbjct: 200 GVTTLED 206 >gi|314990240|gb|EFT34331.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA3] Length = 604 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 40 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 95 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 96 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 152 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 153 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 206 Query: 184 GFKTNED 190 G T ED Sbjct: 207 GVTTLED 213 >gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31] gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31] Length = 1449 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 8/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL+S ++IIEIGAV++ +R Q L G ++ IT+E Sbjct: 423 VVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDRYSQ--LINPGISIPYHITEITSITNEQ 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P + +F DF +A +AHNA FD+GFI +++ L+ S +IDTL + Sbjct: 481 VANQPKIDEVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKEYLNIDLENS-VIDTLQM 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 AR P + L L K G+ + H A+ DS ++++I Sbjct: 538 ARDLFPDFKKYGLGDLNKSLGLALEKH--HRAVDDSQATANMFI 579 >gi|327452827|gb|EGE99481.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL092PA1] Length = 587 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 23 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 79 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 135 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 136 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 189 Query: 184 GFKTNED 190 G T ED Sbjct: 190 GVTTLED 196 >gi|315085964|gb|EFT57940.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA3] Length = 584 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 20 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 76 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 132 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 133 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 186 Query: 184 GFKTNED 190 G T ED Sbjct: 187 GVTTLED 193 >gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus rhamnosus HN001] gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus rhamnosus HN001] Length = 1444 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 6/152 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P G S + L ITD+ Sbjct: 422 VVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S +F F F + A + HN FDVGF++ +R +D + +IDTL + Sbjct: 480 VHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 536 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160 +R HP +N L++L K+Y +++ H + A Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEHHHRANA 568 >gi|83319984|ref|YP_424323.1| DNA polymerase III, alpha subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283870|gb|ABC01802.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 1479 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 5/169 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + + FD+ETTGL + D IIE GA+E + + + + P + KL I + Sbjct: 431 KMVFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPKSKLKDFTK-KLTNINE 489 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L++KP F E ++A +AHNA FD F++ +++ L+ + IIDTL Sbjct: 490 EMLENKPGIEVAFKEINQVI--KDAILVAHNANFDYTFLSHWSEKLGYGKLE-NTIIDTL 546 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +I+R +P ++ L SL KR I+ H D+ +L+D+Y +M+ Sbjct: 547 TISRIIYPELKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 595 >gi|322386941|ref|ZP_08060565.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100] gi|321269223|gb|EFX52159.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100] Length = 1462 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPQITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|254774974|ref|ZP_05216490.1| hypothetical protein MaviaA2_09919 [Mycobacterium avium subsp. avium ATCC 25291] Length = 648 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 34/226 (15%) Query: 10 IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTG S + D I EIGAV++ D F + P R P+ ++L Sbjct: 46 VVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGE-FATLVDPQ-RSIPPQIMRLT 103 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + D P+ ++ F +F ++ A +AHNA FDVGF+ A Q+ + P R Sbjct: 104 GITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRP-R 162 Query: 123 IIDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-- 175 ++ T+ +ARR + PS R L SL + + +T + H AL D+ DV ++ Sbjct: 163 VLCTVRLARRVLSREEAPSVR--LASLARLFAVTT--QPTHRALDDARATVDVLHALIER 218 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 VG N G T + + + +P+++ +R K R+ E L Sbjct: 219 VG----NQGVHT-----YADLRGYLPDVTPAQRRK----RVLAEGL 251 >gi|325697436|gb|EGD39322.1| DNA polymerase III PolC [Streptococcus sanguinis SK160] Length = 1462 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|324989747|gb|EGC21690.1| DNA polymerase III PolC [Streptococcus sanguinis SK353] Length = 1462 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|313764773|gb|EFS36137.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA1] gi|313807207|gb|EFS45694.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA2] gi|313813245|gb|EFS50959.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA1] gi|313820015|gb|EFS57729.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA1] gi|313825546|gb|EFS63260.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA1] gi|313830622|gb|EFS68336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL007PA1] gi|315096369|gb|EFT68345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL038PA1] gi|315101083|gb|EFT73059.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA1] gi|327325880|gb|EGE67670.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL096PA2] gi|328753125|gb|EGF66741.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA1] gi|328759130|gb|EGF72746.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA2] gi|332675138|gb|AEE71954.1| hypothetical protein PAZ_c07700 [Propionibacterium acnes 266] Length = 587 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 23 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 79 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 135 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 136 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 189 Query: 184 GFKTNED 190 G T ED Sbjct: 190 GVTTLED 196 >gi|225573157|ref|ZP_03781912.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM 10507] gi|225039486|gb|EEG49732.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM 10507] Length = 234 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 79/160 (49%), Gaps = 9/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGLD + + IIEIGA+++ + K F F+ P + S L GIT+E Sbjct: 6 VAFDVETTGLDPEQNEIIEIGALKVRN-GKVVERFMKFIRPT-EEISQTITDLTGITNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + S + EF DF E I HN FD F+ + D + S+ IDTL I Sbjct: 64 VVNAQSREQVIPEFLDFCREDI--LIGHNVAFDYSFMKMGALAVGLDFV--SQGIDTLKI 119 Query: 130 ARRKHPS-SRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166 AR+ H L LC Y I +HR+ H AL + L Sbjct: 120 ARKVHGDLESKSLERLCAYYQIENKAAHRAYHDALATAKL 159 >gi|157150704|ref|YP_001451113.1| DNA polymerase III PolC [Streptococcus gordonii str. Challis substr. CH1] gi|157075498|gb|ABV10181.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus gordonii str. Challis substr. CH1] Length = 1462 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|327332247|gb|EGE73984.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL096PA3] Length = 584 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 20 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 76 MVRSAPSLSTVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 132 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 133 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 186 Query: 184 GFKTNED 190 G T ED Sbjct: 187 GVTTLED 193 >gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315] gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315] Length = 375 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 94/166 (56%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG S + RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 16 VFVDLETTGGSSADHRITEIGVVEIGPLGVS--TWTSLVNP-GQAIPPFIQQLTGISDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D P+F+S+ ++ + + ++AHNA FD GF+ AE +R +P ++ T+ + Sbjct: 73 VRDAPTFASLAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGLT-FNPD-VLCTVRL 128 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+G+ + ++H AL D+ LL + ++ Sbjct: 129 SRALFPRESRHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172 >gi|314968043|gb|EFT12142.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA1] Length = 584 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 20 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 76 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 132 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 133 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 186 Query: 184 GFKTNED 190 G T ED Sbjct: 187 GVTTFED 193 >gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG] gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG] gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG] Length = 1444 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 6/152 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P G S + L ITD+ Sbjct: 422 VVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S +F F F + A + HN FDVGF++ +R +D + +IDTL + Sbjct: 480 VHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 536 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160 +R HP +N L++L K+Y +++ H + A Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEHHHRANA 568 >gi|227529104|ref|ZP_03959153.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540] gi|227350948|gb|EEJ41239.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540] Length = 1442 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 6/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL + D++IE+ A ++ D R F F+ P G S + L ITDE Sbjct: 426 VIFDVETTGLSAIYDKVIELSASKMKDGEVLER-FDEFIDP-GFPLSEQTTNLTSITDEM 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S +F F DF + HN FD+GF+N +R N + + + +IDTL + Sbjct: 484 VQGSKSEEEVFRMFRDFC--EGCIIAGHNVSFDMGFMNTGYRRHNMEEIT-APVIDTLPL 540 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSK 157 AR +P R LN+L K++ + + H + Sbjct: 541 ARFLYPHMRGYRLNTLSKKFKVALEHHHR 569 >gi|314960311|gb|EFT04413.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA2] Length = 604 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 40 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 95 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 96 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 152 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 153 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 206 Query: 184 GFKTNED 190 G T ED Sbjct: 207 GVTTLED 213 >gi|260881564|ref|ZP_05404714.2| helicase, UvrD/REP/exonuclease family protein [Mitsuokella multacida DSM 20544] gi|260848768|gb|EEX68775.1| helicase, UvrD/REP/exonuclease family protein [Mitsuokella multacida DSM 20544] Length = 874 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 14/159 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E TG+D D II+I + L K F+ L R++ ++ ++H I+D Sbjct: 514 VVFDVEATGVDPTRDEIIQIAGLRLGRDGKAKAEFKRLL--RARRSVGDSYRVHKISDAI 571 Query: 70 LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ + ++ EF F + A + HN +D+ + +EL R+ PL R DTL Sbjct: 572 LQQEGEEPEAVLREFCAF--AEGAVIVGHNVTYDLSILGSELARLGLPPLSYQRYYDTLD 629 Query: 129 IARRKHPSSRND----LNSLCKRYGITISHRSKHGALLD 163 I RR +P+ N L CK +SHRS H A+ D Sbjct: 630 IFRRFYPNLPNHKLEYLGEFCK-----VSHRSTHDAMDD 663 >gi|313823175|gb|EFS60889.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA2] gi|313833843|gb|EFS71557.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL056PA1] gi|314919771|gb|EFS83602.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA3] Length = 604 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 40 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 95 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 96 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 152 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 153 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 206 Query: 184 GFKTNED 190 G T ED Sbjct: 207 GVTTLED 213 >gi|327468385|gb|EGF13870.1| DNA polymerase III PolC [Streptococcus sanguinis SK330] Length = 1462 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|268316801|ref|YP_003290520.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252] gi|262334335|gb|ACY48132.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252] Length = 565 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG DRIIE+ AV + R F + P GR P +L GIT Sbjct: 9 VVVDTETTG-SGPADRIIELAAVRVQGGRIVER-FATLINP-GRSVPPFITRLTGITTAM 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 L +PS + +F DF + +AHN FD + AELQRI P +P+ + TL Sbjct: 66 LVGRPSADEVLPDFLDFLG--DGVLVAHNLAFDRKMLEAELQRIGLAWPGNPA--LCTLR 121 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +ARR P L+ L + Y I + +R H AL D+ + V ++++ Sbjct: 122 LARRLLPGLPAKGLDGLIRFYQIPVENR--HRALGDAEATAHVLLRLL 167 >gi|167759386|ref|ZP_02431513.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704] gi|167662943|gb|EDS07073.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704] Length = 1499 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 +VFD+ETTG D+IIEIGAV++ + T R F F+ P + P +L ITD+ Sbjct: 463 VVFDLETTGFSPIKDKIIEIGAVKVENGKITER-FSTFVNP--KIPIPFRITQLTSITDQ 519 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P ++ +F +F +A +AHNA FDVGFI + + P S +DT++ Sbjct: 520 MVMDAPDIDTVLPQFLEFIG--DAVLVAHNASFDVGFIEQNCRYQDIVPNFTS--VDTVA 575 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P+ S+ LN + + IS + H A+ D+ +++++K + Sbjct: 576 MARILLPTLSKFKLNVVAN--ALHISLENHHRAVDDAGATAEIFVKFV 621 >gi|149915092|ref|ZP_01903620.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. AzwK-3b] gi|149810813|gb|EDM70652.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. AzwK-3b] Length = 481 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 91/168 (54%), Gaps = 7/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ETTGL ++ D ++++GAV +L+ T ++ P GR P + ++H +TD Sbjct: 278 VAFDTETTGLSAQTDDVVQLGAVRVLNGRVVPGETLDTYVNP-GRPIPPASTEIHRVTDG 336 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ F ++ F F ++A +AHNA FD+ F++ R+ + P ++DT+ Sbjct: 337 HVRGASDFVTVGRNFHHF--ARDAVLVAHNAPFDLAFLHRFADRMGVEWTHP--VLDTVL 392 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ ++ ++ L++LC R ITI +H A D+ ++ ++++ Sbjct: 393 LSAVVFGTTEQHSLDALCDRLAITIPDNLRHTAFGDAQATAEALVRLI 440 >gi|160893350|ref|ZP_02074137.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50] gi|156865042|gb|EDO58473.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50] Length = 1514 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 100/185 (54%), Gaps = 17/185 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 IVFDIETTGL K ++IIEIGAV++ D + +R F F+ P + P ++ +L ITDE Sbjct: 459 IVFDIETTGLSQKKNKIIEIGAVKVKDGEEIDR-FSEFINP--EEPIPYSIEQLTSITDE 515 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDT 126 + P+ I +F +F + +AHNA FD GFI NA+ + D + I+DT Sbjct: 516 MVMHAPTVDVILPKFLEFCGDDIV--VAHNAAFDTGFIKKNAKDLGMKFD----NTIMDT 569 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++++ P + L+ +CK + H H A+ D++ + +++K+ + G Sbjct: 570 MTLSHVLLPELGKFTLDRVCKALNVKNEHH--HRAVDDANATAKIFVKLY--EMLVERGV 625 Query: 186 KTNED 190 KT ED Sbjct: 626 KTVED 630 >gi|13357937|ref|NP_078211.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762156|ref|YP_001752460.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|13959349|sp|Q9PQB4|DPO3_UREPA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|11279168|pir||C82898 DNA polymerase III alpha chain 1 UU377 [imported] - Ureaplasma urealyticum gi|6899360|gb|AAF30786.1|AE002135_2 DNA polymerase III alpha chain 1 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827733|gb|ACA32995.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 1442 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL D IIE GAV + + + Q F+ P + N L I+ E Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFIKPIQQINE-NVTNLTNISQEM 468 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127 + + + + + F++ +AHN FD+ FIN L + +PL +PS IDTL Sbjct: 469 VNNAIDEKTALLKIKEIFDDH--ILVAHNGINFDINFINQRLLKWGLEPLKNPS--IDTL 524 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I+R +P + L ++CK+Y + + S H A D+ +L+DV+ M Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDESAHRADYDAIVLADVFKVM 571 >gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum WAL-14163] gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673] gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum WAL-14163] gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673] Length = 1511 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 19/172 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66 +VFDIETTG +RIIEIGAV + + ++ F F+ P + P E KL GI Sbjct: 487 VVFDIETTGFSPLKNRIIEIGAVRVEEGRIVDK-FSSFVNP----DVPIPFEIEKLTGIN 541 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124 D + D P + EF +F + A +AHNA FD+ FI NA Q + +P ++ Sbjct: 542 DNMVLDAPKIDRVLPEFLEFC--RGAVMVAHNAGFDISFIKENARQQGLEFNP----TVL 595 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+S+AR P+ +R L+++ K I +++ H A+ D+ ++++++ + Sbjct: 596 DTVSLARVLLPNLNRFKLDTVAKELKINLANH--HRAVDDAGATAEIFVRFI 645 >gi|34556664|ref|NP_906479.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM 1740] gi|34482378|emb|CAE09379.1| DNA POLYMERASE III EPSILON SUBUNIT DNAQ [Wolinella succinogenes] Length = 206 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 86/158 (54%), Gaps = 12/158 (7%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEAL-KLHGI 65 R + D+ET G D+IIEIGA+ L K +F+ ++ C K PE + K+ GI Sbjct: 15 RFCIVDVETNGSLPAKDQIIEIGAI-LYQGGKIIDSFESYVFC----KEVPEYITKITGI 69 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E LKD PS + + F F +A ++AHNA FD GF+ A ++R D L +R + Sbjct: 70 TSEELKDAPSMKEVLTRFRLFLG--DAVFVAHNALFDYGFLGAMMKRSGMDRLH-NRKLC 126 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGAL 161 T+ +AR+ P+ R L+ L + I +SHR+ AL Sbjct: 127 TIDLARKTIPADRYGLSFLNEFLEIHTEVSHRAYADAL 164 >gi|118466522|ref|YP_881505.1| hypothetical protein MAV_2300 [Mycobacterium avium 104] gi|118167809|gb|ABK68706.1| DNA polymerase III, epsilon subunit [Mycobacterium avium 104] Length = 643 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 34/226 (15%) Query: 10 IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTG S + D I EIGAV++ D F + P R P+ ++L Sbjct: 41 VVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGE-FATLVDPQ-RSIPPQIMRLT 98 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + D P+ ++ F +F ++ A +AHNA FDVGF+ A Q+ + P R Sbjct: 99 GITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRP-R 157 Query: 123 IIDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-- 175 ++ T+ +ARR + PS R L SL + + +T + H AL D+ DV ++ Sbjct: 158 VLCTVRLARRVLSREEAPSVR--LASLARLFAVTT--QPTHRALDDARATVDVLHALIER 213 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 VG N G T + + + +P+++ +R K R+ E L Sbjct: 214 VG----NQGVHT-----YADLRGYLPDVTPAQRRK----RVLAEGL 246 >gi|257469515|ref|ZP_05633607.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] gi|317063759|ref|ZP_07928244.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] gi|313689435|gb|EFS26270.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] Length = 1446 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 10/165 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 +VFD+ET GL+S IIEIGAV+L R Q+ N +K P+ ++ L I+ + Sbjct: 421 VVFDLETMGLNSHEHEIIEIGAVKLQGTRIVERYSQLV---NPKKPIPKKIQELTNISQD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P+ + +F +F ++ +AHNA FD+GFI ++++ P+ +IDTL Sbjct: 478 MVDNMPTIEEVLPKFMEFVG--DSTMVAHNAPFDMGFIRRDVKKFMGYDYKPA-VIDTLQ 534 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +AR +P + L +L K G+++ + H A+ DS ++++I Sbjct: 535 MARDLYPELKAYGLKNLNKVLGLSLDNH--HRAVDDSQATANMFI 577 >gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] Length = 1437 Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 6/152 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P G S + L ITD+ Sbjct: 415 VVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDDM 472 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S +F F F + A + HN FDVGF++ +R +D + +IDTL + Sbjct: 473 VHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 529 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160 +R HP +N L++L K+Y +++ H + A Sbjct: 530 SRMLHPERKNHKLDTLAKQYKVSLEHHHRANA 561 >gi|315108203|gb|EFT80179.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA2] Length = 584 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 20 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 76 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 132 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 133 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 186 Query: 184 GFKTNED 190 G T ED Sbjct: 187 GVTTFED 193 >gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular protein) [Cupriavidus taiwanensis LMG 19424] gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular protein) [Cupriavidus taiwanensis LMG 19424] Length = 532 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 11/169 (6%) Query: 8 RKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IVF D+ETTG D++ DRI EIG VE+ ++ L P G P ++ GI+ Sbjct: 31 RPIVFVDLETTGADAQRDRITEIGVVEVGPDGIVE--WETLLDP-GMSIPPFIQRMTGIS 87 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ ++ +P+F S+ + Q ++AHNA+FD GF+ +R + ++ T Sbjct: 88 DDMVRGQPTFESLAESLAERL--QGRLFVAHNARFDYGFLKNAFRRAGVT--FRADVLCT 143 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++R PS R+ L++L R+G+T + +H AL D+ LL + K+ Sbjct: 144 VRLSRSLFPSVERHGLDALIARFGLT--PKGRHRALADAELLWQFWQKI 190 >gi|261251946|ref|ZP_05944520.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891] gi|260938819|gb|EEX94807.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891] Length = 204 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 91/173 (52%), Gaps = 19/173 (10%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL + DR IEIGAV+L+D + TFQ + P G + S GIT+ Sbjct: 8 IVLDFETTGLSPNMGDRAIEIGAVKLID-GQVVDTFQQLMNP-GFRVSSFIEGYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L PS + + S+F DF N +AHNA FD F++AE +RIN++ +L Sbjct: 66 MLAGAPSCAEVMSDFNDFIGNDN--LVAHNASFDKRFLDAEFERINRNY--RGEFACSLL 121 Query: 129 IARR---KHPSSRNDLNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMM 175 ++RR + PS + L L + I + HR AL DS + + +++ M+ Sbjct: 122 VSRRLNQEAPSHK--LGDLVRYMNIDNDGVFHR----ALADSQMTAKLWLLML 168 >gi|85057593|ref|YP_456509.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom phytoplasma AYWB] gi|84789698|gb|ABC65430.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom phytoplasma AYWB] Length = 1572 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D+IIEI +++ + +K FQ F+ P +K + + ITDE Sbjct: 482 VVFDLETTGLSNVRDKIIEIAGIKIKNGNKIGE-FQKFIDPQ-QKLTKTITNITNITDEM 539 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ + + + +F F ++ +AHNA FDV F+ + + + K L+P IIDT+++ Sbjct: 540 LQGQQTIDQVLPQFLAF--AKDCVLVAHNASFDVDFLKEKAKEL-KISLEPKPIIDTMAL 596 Query: 130 ARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R + L L + + + H AL D+ S+++IKM+ Sbjct: 597 SQRYFSNLLKYFSLKRLATVFKVKL--EDHHRALADATATSEIFIKMI 642 >gi|313827785|gb|EFS65499.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA2] Length = 590 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG S+ +I EIGAV++ + FQ +CP G P +++ L GIT Sbjct: 26 CVVDLETTG-TSEGSQITEIGAVKVCG-GRVEGEFQTLVCPTG--PIPASVQVLTGITHA 81 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ ++DTL+ Sbjct: 82 MVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-VVDTLA 138 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T + H AL D+ DV ++ VG N Sbjct: 139 LARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLIDRVG----NL 192 Query: 184 GFKTNED 190 G T ED Sbjct: 193 GVTTFED 199 >gi|323493701|ref|ZP_08098821.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546] gi|323312041|gb|EGA65185.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546] Length = 204 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 88/168 (52%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL + DR IEIGAV+L++ + TFQ + P G + S GIT+ Sbjct: 8 IVLDFETTGLSPNMGDRAIEIGAVKLINGEVVD-TFQQLMNP-GFRVSSFIEGYTGITNA 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + PS + S+F F + N +AHNA FD F++AE RINKD L +L Sbjct: 66 MLANAPSCEEVMSQFHSFIADDN--LVAHNASFDKRFLDAEFDRINKDYL--GDFACSLL 121 Query: 129 IARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++RR + + L L RY + H AL DS + + +++ M+ Sbjct: 122 VSRRLNQDAPSHKLGDLV-RYKQIDNDGVFHRALADSQMTAKLWLLML 168 >gi|310287853|ref|YP_003939111.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17] gi|309251789|gb|ADO53537.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17] Length = 180 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 9/157 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG+ D IIE GAV+++D + T+Q + P R +P +L GIT + Sbjct: 12 VVLDLETTGVSWYRDTIIEFGAVKVVDRKPVD-TYQQLVNP-MRNLNPFITQLTGITPDM 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P+ ++ +F + + I HN +FD+ FI+ QRI + P+RIIDTL Sbjct: 70 LEPAPTLDTVLPDFLRWCGDDAM--IGHNIMRFDIKFIDLAAQRILHHAV-PNRIIDTLQ 126 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 ++R +P +R+ L L +R+ I+ +H AL D+ Sbjct: 127 MSRSMYPQYNRHRLVDLIQRFD--IADVEEHRALSDA 161 >gi|76363558|sp|P0C0B7|DPO3_STRPY RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|9789541|gb|AAF98345.1| DNA polymerase III alpha chain [Streptococcus pyogenes] Length = 1465 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 6/143 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ L+ Sbjct: 431 DVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKHLQG 488 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 ++ F DF +++ +AHNA FDVGF+NA +R + P +IDTL AR Sbjct: 489 AKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYER-HDLPKITQPVIDTLEFARN 545 Query: 133 KHPS-SRNDLNSLCKRYGITISH 154 +P R+ L L KR+ +++ H Sbjct: 546 LYPEYKRHGLGPLTKRFQVSLDH 568 >gi|114321202|ref|YP_742885.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227596|gb|ABI57395.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] Length = 714 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKN-DRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD E TGL+ + D II I V +++ T TF + P GR P +++ HGITD Sbjct: 510 VVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINP-GRPIPPGSVRFHGITD 568 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++DKP + +F F +A +AHNA FD+ FI+ + +R D + L Sbjct: 569 DDVQDKPPIEVVLPQFKSFVG--DAVLVAHNAAFDMKFISMK-EREAGVRFDNPVLDTLL 625 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A + L++LC RYGI I+ R H AL D+ +++ ++++ Sbjct: 626 LSALLDGDEEDHSLDALCDRYGIAITGR--HTALGDTLATAELLVRII 671 >gi|224283886|ref|ZP_03647208.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum NCIMB 41171] gi|311064734|ref|YP_003971459.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum PRL2010] gi|313141038|ref|ZP_07803231.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB 41171] gi|310867053|gb|ADP36422.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium bifidum PRL2010] gi|313133548|gb|EFR51165.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB 41171] Length = 180 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 9/157 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG+ D IIE GAV+++D + T+Q + P R +P +L GIT + Sbjct: 12 VVLDLETTGVSWYRDTIIEFGAVKVVDRKPVD-TYQQLVNP-MRNLNPFITQLTGITPDM 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P+ ++ +F + + I HN +FD+ FI+ QRI + P+RIIDTL Sbjct: 70 LEPAPTLDTVLPDFLRWCGDDAM--IGHNIMQFDIKFIDLAAQRILHHAV-PNRIIDTLQ 126 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 ++R +P +R+ L L +R+ I+ +H AL D+ Sbjct: 127 MSRSMYPQYNRHRLVDLIQRFD--IADVEEHRALSDA 161 >gi|327462769|gb|EGF09091.1| DNA polymerase III PolC [Streptococcus sanguinis SK1057] Length = 1462 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GYPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|83310642|ref|YP_420906.1| DNA polymerase III [Magnetospirillum magneticum AMB-1] gi|82945483|dbj|BAE50347.1| DNA polymerase III [Magnetospirillum magneticum AMB-1] Length = 412 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 10/167 (5%) Query: 10 IVFDIETTGL-DSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL S+ D+I+ I V +++ + +F + P GR E+++ HGITD Sbjct: 220 VVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNP-GRPIPAESIRYHGITD 278 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + DKP + +F + +A +AHNA FD+ F+ + + P ++DT+ Sbjct: 279 DMVVDKPPAGVVLPQFRSYV--ADAVLVAHNAAFDLKFLRMREKDMGIRFDIP--VLDTM 334 Query: 128 SIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++ P + + L+ +C RYGI I+ R H AL D+ + + V ++ Sbjct: 335 ILSNFLDGPDAGHSLDDICDRYGIEITDR--HTALGDAMVTAAVLLR 379 >gi|332143320|ref|YP_004429058.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327553342|gb|AEB00061.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 715 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 9/164 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R +V DIETTG ++ +RI EIG V+L+ + +R FQ L P R+ + Sbjct: 536 VRDPAQPYVVVDIETTGGNNSYNRITEIGMVKLVGGKEVDR-FQTLLNPQ-RRIPSSITR 593 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GI+D+ + D P F+ + F ++A ++AHN FD GFI E R+ + P Sbjct: 594 LTGISDDMVADAPLFAEVADHIASF--TEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPK 651 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 + T+ RR HP S L +L K + I + H AL D+ Sbjct: 652 --MCTVREMRRTHPGLSSYSLANLTKHFHIDMEQH--HRALSDA 691 >gi|125718854|ref|YP_001035987.1| DNA polymerase III PolC [Streptococcus sanguinis SK36] gi|166217455|sp|A3CQI2|DPO3_STRSV RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|125498771|gb|ABN45437.1| DNA polymerase III polC-type, putative [Streptococcus sanguinis SK36] Length = 1462 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKIIQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|260906794|ref|ZP_05915116.1| hypothetical protein BlinB_15797 [Brevibacterium linens BL2] Length = 581 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 19/188 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTG + I EIGAV+ + FQ + P SP +L GIT Sbjct: 32 VIVDLETTGTTAGKSEITEIGAVKTRG-GEVLGEFQSLVKPEESVISPFVARLTGITHAM 90 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D PS S+ F +F A +AHNA FD+GFI + ++++ P+ ++DT+++ Sbjct: 91 VDDAPSIRSVLPSFLEFC--VGAVLVAHNAPFDIGFIRSACEKLDYHWPQPT-VLDTVTL 147 Query: 130 ARRKHPSSRND-----LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQIN 182 +RR SR++ L++L +G +S H AL D+ +V +++ GG Sbjct: 148 SRRV--VSRDEVRNHKLSTLAAHFGTEVS--PDHRALSDAKATGEVLHRVLERFGG---- 199 Query: 183 FGFKTNED 190 +G T E+ Sbjct: 200 YGITTLEE 207 >gi|153815178|ref|ZP_01967846.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756] gi|145847437|gb|EDK24355.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756] Length = 279 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 9/163 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTGLD N+ IIEIGA+++ D K + F F+ P SP L GI+++ Sbjct: 40 IAFDLETTGLDPMNNEIIEIGALKVRD-GKVSERFMEFIKPQ-ELISPAITGLTGISNDM 97 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S+ ++F DF E I HN FD F R P + IDTL I Sbjct: 98 VASARPARSVITDFIDFCEEDI--LIGHNIIFDYSFTKCTAAR-EGLPFE-KMGIDTLKI 153 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 A++ HP L++LC+ Y I +++ H A D+ + +Y Sbjct: 154 AKKVHPELESKSLSALCEHY--KIENKAAHRAYFDALATAKLY 194 >gi|315497459|ref|YP_004086263.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB 48] gi|315415471|gb|ADU12112.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB 48] Length = 717 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 13/162 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG S N+R+ EIGAV++ + + T+Q + P R+ P +L GI++ + Sbjct: 547 VVDIETTGGQSANERVTEIGAVKIRN-GEIIDTWQSLINPE-RRIPPFITELTGISNAMV 604 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P F+ I +F F + ++AHN FD GF++AE +R+ + P R ++A Sbjct: 605 RDAPRFADIADDFDAFL--KGTVFVAHNVNFDYGFLSAEYRRLER----PFRYPKMCTVA 658 Query: 131 --RRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHLL 167 RR P + L L + +GI + HR+ A+ + LL Sbjct: 659 SMRRHFPGLAAYGLGPLSREFGIELKNHHRALSDAMAAAELL 700 >gi|331084769|ref|ZP_08333857.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410863|gb|EGG90285.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 238 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 11/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL + D IIEIGAV++ D T+R F FL P + SP ++ GIT+E Sbjct: 6 VAFDLETTGLSEERDSIIEIGAVKVTDGKVTDR-FMEFLKP-AEEISPMITQITGITNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + ++ +F F E+ + HN FD F+ + R IDTL I Sbjct: 64 VAHARNTKAVIDDFMGFCGEEV--LLGHNILFDYKFMKRYACKYQHS--FERRGIDTLKI 119 Query: 130 ARRKHP--SSRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166 AR+ H SR+ L +LC Y I +HR+ H AL + L Sbjct: 120 ARKVHKDLESRS-LEALCAHYQIKNDAAHRAYHDALATAKL 159 >gi|224826734|ref|ZP_03699834.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224600954|gb|EEG07137.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 707 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 97/175 (55%), Gaps = 12/175 (6%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPE-ALK 61 +++ VFD ETTGL+ + D II+IGA +++ + F+ + P R+ PE ++K Sbjct: 513 SELSYTVFDTETTGLEPAAGDEIIQIGATRIVNRRLLQHEGFEQLIDP--RRPLPEDSVK 570 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT E L +P ++ F + + +AHNA FD+ F+ +L+ + Sbjct: 571 IHGITPEMLAGQPPLDTVLPAFRAYCA--DTVLVAHNAAFDMRFL--QLKEASTGVRFDQ 626 Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++ HP+ + L ++ +R G+TI R H A+ D+ + +V++KM+ Sbjct: 627 PVLDTLLLSAVLHPNQESHRLEAIAERLGVTIIGR--HTAMGDAIVTGEVFLKMI 679 >gi|281355248|ref|ZP_06241742.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC BAA-548] gi|281318128|gb|EFB02148.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC BAA-548] Length = 185 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 5/125 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 +FD+ETTG+ DRI+E+ AV +D + FQ + P G + +A+ +H ITD+ + Sbjct: 11 IFDVETTGMSPVRDRIVELAAVR-VDRDGSLSRFQSLVNP-GVRIPAQAVAVHHITDDMV 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 PSF+ + +F +F +E +AHNA+FD+GF+ L R PL + +D+L + Sbjct: 69 AGAPSFARMGLDFLEFASESTL--VAHNARFDLGFLQESLARTGL-PLWKGKTLDSLRLL 125 Query: 131 RRKHP 135 + P Sbjct: 126 KTTFP 130 >gi|121998681|ref|YP_001003468.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1] gi|121590086|gb|ABM62666.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1] Length = 707 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGL-DSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++FD ETTGL S+ D II I V +++ F+ + P GR ++K HGI D Sbjct: 515 VIFDTETTGLAPSEGDEIISIAGVRMVNGRILEGECFEQLVNP-GRPIPKASIKFHGIRD 573 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + DKP +++ +F F ++ +AHNA FD+ FI + + +P ++DTL Sbjct: 574 EMVADKPGIATVLPQFSAFVG--DSVLVAHNAAFDMKFIRLKEGQCGLKFENP--VLDTL 629 Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ H + + L ++ R G+ IS R H AL D+ + +++ +M+ Sbjct: 630 LLSVFLHDHTPEHTLEAIANRLGVEISGR--HTALGDTLVTGEIFAQML 676 >gi|294677643|ref|YP_003578258.1| PAS domain/exonuclease domain-containing protein [Rhodobacter capsulatus SB 1003] gi|6014992|sp|O68045|DPO3E_RHOCA RecName: Full=DNA polymerase III subunit epsilon-like protein gi|3128279|gb|AAC16131.1| DNA polymerase III alpha chain [Rhodobacter capsulatus SB 1003] gi|294476463|gb|ADE85851.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB 1003] Length = 704 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 8/174 (4%) Query: 5 NKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62 +K+ +VFD ETTGL + D I++I AV +++ + F + P GR + + Sbjct: 506 DKLTFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNP-GRPIPAASTAV 564 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGIT+ + P+ + + F F + A +AHNA FD+ F+ + I K+ +P Sbjct: 565 HGITEAMVATAPAIAEVGRRFHKF--AEGAVLVAHNAPFDLEFLRRKELLIGKNFDNP-- 620 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++ ++ + L++L R GITI ++H AL D+ ++ +++++ Sbjct: 621 VLDTVLLSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRLL 674 >gi|225026305|ref|ZP_03715497.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353] gi|224956369|gb|EEG37578.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353] Length = 1484 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 13/169 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG +D IIEIGAV+ + K + + VF+ P R +L I D Sbjct: 454 VVFDLETTGFSPIHDAIIEIGAVK-VSKGKISDHYSVFVNPQ-RPIPLRITELTSIDDSM 511 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127 + D S I EF F + +AHNA+FDV FI NA+ Q D ++DT+ Sbjct: 512 VADAKSIEEILPEFLSFC--EGCSLVAHNAEFDVSFIEENAKRQGFETD----FTVLDTV 565 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR ++ LN++CKR I H H A+ D+ + ++V+++ + Sbjct: 566 QMARLLLTDLNKFKLNTVCKRLNIKQEHH--HRAVDDARVTAEVFLRFV 612 >gi|294678385|ref|YP_003579000.1| PAS domain/exonuclease domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294477205|gb|ADE86593.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB 1003] Length = 704 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 8/174 (4%) Query: 5 NKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62 +K+ +VFD ETTGL + D I++I AV +++ + F + P GR + + Sbjct: 506 DKLTFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNP-GRPIPAASTAV 564 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGIT+ + P+ + + F F + A +AHNA FD+ F+ + I K+ +P Sbjct: 565 HGITEAMVATAPAIAEVGRRFHKF--AEGAVLVAHNAPFDLEFLRRKELLIGKNFDNP-- 620 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++ ++ + L++L R GITI ++H AL D+ ++ +++++ Sbjct: 621 VLDTVLLSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRLL 674 >gi|317502363|ref|ZP_07960529.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089964|ref|ZP_08338855.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896236|gb|EFV18341.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403102|gb|EGG82665.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium 3_1_46FAA] Length = 245 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 9/163 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTGLD N+ IIEIGA+++ D K + F F+ P SP L GI+++ Sbjct: 6 IAFDLETTGLDPMNNEIIEIGALKVRD-GKVSERFMEFIKPQ-ELISPAITGLTGISNDM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S+ ++F DF E I HN FD F R P + IDTL I Sbjct: 64 VASARPARSVITDFIDFCEEDI--LIGHNIIFDYSFTKCTAAR-EGLPFE-KMGIDTLKI 119 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 A++ HP L++LC+ Y I +++ H A D+ + +Y Sbjct: 120 AKKVHPELESKSLSALCEHY--KIENKAAHRAYFDALATAKLY 160 >gi|225180860|ref|ZP_03734308.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT 1] gi|225168341|gb|EEG77144.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT 1] Length = 269 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 97/172 (56%), Gaps = 11/172 (6%) Query: 8 RKIVFDIETTGL-DSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEAL-KLHG 64 R I+FD ETTG + D II I AV + + K ++ F + P+ ++ P+A+ L G Sbjct: 77 RYIIFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPH--RSIPQAVCDLTG 134 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD+ + DK S+ S+F DF ++ +AHNA+FD+ F+N +L + + + +I Sbjct: 135 ITDDMVADKCGICSVLSDFLDFIG--DSVLVAHNAEFDLAFLNIKLNWYTQTEI-YNPVI 191 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT + R +P +DL++L + + + R +H AL DS + +++++ + Sbjct: 192 DTYKLGRALYPQLLSHDLDTLIRHH--RVKERPRHTALGDSLMTAEIFLDYL 241 >gi|332359968|gb|EGJ37782.1| DNA polymerase III PolC [Streptococcus sanguinis SK1056] Length = 866 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSAFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F Q++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|260434020|ref|ZP_05787991.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260417848|gb|EEX11107.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 470 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 7/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL D I++IGAV ++ F + P G P + ++H ++D Sbjct: 279 VVFDTETTGLLPHKDEIVQIGAVRVVKGRIVEGEQFDTLVNP-GIPIPPASTRVHKVSDR 337 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P + +F F ++A +AHNA FD+ F+ +R+ + P I+DT+ Sbjct: 338 MVQDAPDIITAGRQFHHF--ARDAVIVAHNAPFDMAFLRRHAKRMEVEWDHP--ILDTVL 393 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ +S + L++LC R GI I +H AL D+ ++ ++M+ Sbjct: 394 LSAVLFGASETHTLDALCDRLGIEIPETLRHTALGDAVATAEALVRML 441 >gi|257466340|ref|ZP_05630651.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] gi|315917497|ref|ZP_07913737.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] gi|313691372|gb|EFS28207.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 1450 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 8/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+ET G +S +IIEIGAV++++ +R Q L G+ + + ITD Sbjct: 425 VVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDRFSQ--LVNPGQSIPQNIVDVTNITDSM 482 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++++P+ + +F DF + + +AHNA FD+G++ + ++ +PS IDTL + Sbjct: 483 VQNEPNIEEVLPKFLDFI--EGSILVAHNADFDIGYLKQQCKQQGYSDFNPS-FIDTLQM 539 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 A+ +P + L L K+ G+++ + H A+ D ++++ Sbjct: 540 AKDLYPELKQFGLGPLNKKLGLSLENH--HRAVDDCQATGNMFL 581 >gi|255523029|ref|ZP_05390001.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans P7] gi|255513144|gb|EET89412.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans P7] Length = 862 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+E+TG+D D II+I A+++ + F+ FL N K+ + +HG +DEF Sbjct: 498 IVFDVESTGVDVTEDEIIQIAAIKVNKNGQVTEKFERFLKNN--KSVKNSEHVHGFSDEF 555 Query: 70 LK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK + +++ EF F +++ + HN ++D+ + +ELQR DTL Sbjct: 556 LKKNGEDKNTVLKEFVKF--SEDSVIVGHNVQYDINILTSELQRAGLGEPKFKAFYDTLD 613 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I RR HP+ RN L +L + ++ H A+ D D+ ++ + Sbjct: 614 IYRRFHPNLRNHKLETLSHIF--ETENKPSHDAMDDIQATKDILVRAI 659 >gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705] gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705] Length = 1444 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P G S + L ITD+ Sbjct: 422 VVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDDM 479 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S +F F F + A + HN FDVGF++ +R +D + +IDTL + Sbjct: 480 VHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 536 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 +R HP +N L++L K+Y +++ H H A +D+ Sbjct: 537 SRMLHPERKNHKLDTLAKQYKVSLEHH--HRANVDA 570 >gi|262066554|ref|ZP_06026166.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC 33693] gi|291379736|gb|EFE87254.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC 33693] Length = 1449 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 8/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL+S ++IIEIGAV++ +R Q L G ++ IT+E Sbjct: 423 VVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDRYSQ--LINPGISIPYHITEITSITNEQ 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P + +F +F +A +AHNA FD+GFI +++ L+ S +IDTL + Sbjct: 481 VANQPKIDEVIGKFVEFIG--DAVLVAHNAPFDMGFIKRDIKEYLNIDLESS-VIDTLQM 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 AR P + L L K G+ + H A+ DS ++++I Sbjct: 538 ARDLFPDFKKYGLGDLNKSLGLALEKH--HRAVDDSQATANMFI 579 >gi|257452473|ref|ZP_05617772.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] gi|317059014|ref|ZP_07923499.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] gi|313684690|gb|EFS21525.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] Length = 1450 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 8/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+ET G +S +IIEIGAV++++ +R Q L G+ + + ITD Sbjct: 425 VVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDRFSQ--LVNPGQSIPQNIVDVTNITDSM 482 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++++P+ + +F DF + + +AHNA FD+G++ + ++ +PS IDTL + Sbjct: 483 VQNEPNIEEVLPKFLDFI--EGSILVAHNADFDIGYLKQQCKQQGYSDFNPS-FIDTLQM 539 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 A+ +P + L L K+ G+++ + H A+ D ++++ Sbjct: 540 AKDLYPELKQFGLGPLNKKLGLSLENH--HRAVDDCQATGNMFL 581 >gi|291544892|emb|CBL18001.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp. 18P13] Length = 1444 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+FD+ETTGL ++ DR+ EIGA+++ + + +F ++ P R PE L GI + Sbjct: 429 IIFDVETTGLSAERDRLTEIGAIKVKNM-RVADSFHTYVNPE-RPIPPEITDLTGIHEGM 486 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P S EF+ F E + +AHNA+FD FI+A R + ID+L + Sbjct: 487 VAEAPKASQALKEFFAFCGE-DPVLVAHNARFDTSFIDAAAGRAGQR--YAYAYIDSLVL 543 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P +++ LN + K + + H A D+ +L+ +Y++++ Sbjct: 544 CQAMLPDLAKHKLNVVAKH--LKLGKFDHHRADNDAMMLAKIYLELV 588 >gi|172059933|ref|YP_001807585.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6] gi|171992450|gb|ACB63369.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] Length = 375 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 94/166 (56%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + RI EIG VE+ + T+ + P G+ P +L GI+D+ Sbjct: 16 VFVDLETTGGSTAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQSIPPFIQQLTGISDDM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ ++ + + ++AHNA FD GF+ AE +R +P ++ T+ + Sbjct: 73 VRDAPSFASLAPTLFERLDGKL--FVAHNASFDRGFLRAEFERAGI-AFNPD-VLCTVRL 128 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P +R+ L++L +R+G+ + ++H AL D+ LL + ++ Sbjct: 129 SRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172 >gi|29839853|ref|NP_828959.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC] gi|29834200|gb|AAP04837.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC] Length = 249 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 5/157 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D E TGLD K DRIIE A+ + K + + + P+ R S E+ ++H I+D Sbjct: 10 VCLDCEMTGLDVKKDRIIEFAAMRF-TFDKVIDSMETLINPD-RVISAESQRIHRISDAM 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LKD+P + +F + F E + + H+ FD+ + E +RI + L IIDTL + Sbjct: 68 LKDQPRIAEVFPKIKSFLKEGDY-IVGHSVGFDLQVLTQEAERIGESFLSKYYIIDTLRL 126 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ S N L +L + + + H A+ D + Sbjct: 127 AKEYGDSPNNSLEALAVHF--NVPYDGNHRAMKDVEI 161 >gi|331265607|ref|YP_004325237.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5] gi|326682279|emb|CBY99896.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5] Length = 1463 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 6/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + +I++ A ++ F F+ P G S +L GIT + Sbjct: 426 VVFDVETTGLSAIYNDLIQVAASKMYK-GNVIAEFDEFINP-GHPLSAFTTELTGITYDH 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + EF +F ++ +AHNA FDVGF+NA +R + P +IDTL Sbjct: 484 VKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYER-HGLPKISQPVIDTLEF 540 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+G+ + H Sbjct: 541 ARNLYPEYKRHGLGPLTKRFGVALEH 566 >gi|251796155|ref|YP_003010886.1| hypothetical protein Pjdr2_2143 [Paenibacillus sp. JDR-2] gi|247543781|gb|ACT00800.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. JDR-2] Length = 244 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 15/173 (8%) Query: 10 IVFDIETTGL-DSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +VFD+ETTG S D II GAV + LD S R F + P R+ + ++L G Sbjct: 61 VVFDLETTGFYPSNGDEIISFGAVHMKGLELDES---RQFYSLVNPK-RRIPRQIIELTG 116 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E ++D P + +F +F + IAH A D F+NA L R +K L+ R++ Sbjct: 117 ITNEMVQDAPDLMQVLHDFMEFIGRRLL--IAHAAGHDKQFLNAALWRTSKVSLN-HRVL 173 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 DT+ +A+ P + L+ L + GI I+ R H AL DS + + ++ + +V Sbjct: 174 DTMLVAKWLEPKRASYALDDLLEDCGIPITER--HHALQDSLMTAKLWQQFLV 224 >gi|254821932|ref|ZP_05226933.1| hypothetical protein MintA_18512 [Mycobacterium intracellulare ATCC 13950] Length = 323 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 30/215 (13%) Query: 10 IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTG +K+ D I EIGAV++ F + P R P+ ++L Sbjct: 18 VVVDLETTGGRTKSAAGTEPDAITEIGAVKVRGGVVLGE-FATLIDPQ-RSIPPQVVRLT 75 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + D P+ ++ F +F +Q A +AHNA FD+GF+ A QR + P + Sbjct: 76 GITTAMVSDAPTIDAVLPMFLEFARLDQGAVLVAHNAGFDIGFLRAAAQRCDIAWPRP-Q 134 Query: 123 IIDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-- 175 ++ T+ +ARR + PS R L SL + + +T + H AL D+ DV ++ Sbjct: 135 VLCTVRLARRVLSREEAPSVR--LASLARLFAVTT--QPTHRALDDARATVDVLHALIER 190 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 VG N G T + + + +P+++ +R K Sbjct: 191 VG----NQGVHT-----YADLRSYLPDVAPAQRRK 216 >gi|160880751|ref|YP_001559719.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg] gi|160429417|gb|ABX42980.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg] Length = 1527 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTG S D+IIEIGAV++ + +R F F+ P P + KL ITDE Sbjct: 498 VVFDIETTGFSSVKDKIIEIGAVKIQHGTIVDR-FSTFINP--EVPIPYHIQKLTSITDE 554 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + I EF F + +AHNA FD+GFI + + +N PL + +DT+ Sbjct: 555 MVIGSRTIEEILPEFLSFC--EGCYLVAHNASFDIGFITKKAEFLNI-PLTVTS-VDTVG 610 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR N L+++ K ++IS + H A+ D+ +++Y+K + Sbjct: 611 LARVLLNHLNNFKLDTVAK--ALSISLENHHRAVDDAGCTAEIYLKFL 656 >gi|307717390|gb|ADN88748.1| DNA polymerase III [Listeria welshimeri] Length = 231 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 20/159 (12%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + F EW +AHNA FD+GFIN +++ + D + ++DT Sbjct: 59 SDPIDVVLKRF--------KEWSGDDILVAHNASFDMGFINTAYEKVGLEKAD-NAVVDT 109 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 L +AR +P +N LN+L K++ I + H A+ D+ Sbjct: 110 LELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146 >gi|307717338|gb|ADN88722.1| DNA polymerase III [Listeria welshimeri] gi|307717340|gb|ADN88723.1| DNA polymerase III [Listeria welshimeri] gi|307717362|gb|ADN88734.1| DNA polymerase III [Listeria welshimeri] gi|307717368|gb|ADN88737.1| DNA polymerase III [Listeria welshimeri] gi|307717392|gb|ADN88749.1| DNA polymerase III [Listeria welshimeri] Length = 231 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 20/159 (12%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + F EW +AHNA FD+GFIN +++ + D + ++DT Sbjct: 59 SDPIDVVLKRF--------KEWSGDDILVAHNASFDMGFINTAYEKVGLEKAD-NAVVDT 109 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 L +AR +P +N LN+L K++ I + H A+ D+ Sbjct: 110 LELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146 >gi|259503120|ref|ZP_05746022.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041] gi|259168986|gb|EEW53481.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041] Length = 1444 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL + D++IE+ AV++ + R F F+ P G S + L ITDE Sbjct: 424 VIFDVETTGLSAIYDKVIELSAVKMKNGEVLAR-FDEFIDP-GFPLSEQTTNLTSITDEM 481 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ S +F F DF HN FD+GF+N +R + + +IDTL + Sbjct: 482 VRGSKSEEEVFKMFKDFC--AGTIIAGHNVSFDMGFMNTGYRRHQMEEIT-EPVIDTLPL 538 Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167 AR +P+ R LN+L K++ + + HR+ A HLL Sbjct: 539 ARFLYPNMRGYRLNTLSKKFKVALEHHHRANFDAEATGHLL 579 >gi|307298437|ref|ZP_07578240.1| DNA polymerase III, alpha subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306915602|gb|EFN45986.1| DNA polymerase III, alpha subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 1412 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL+ K D IIEIGA++ + ++ TF F+ P ++ S L GIT++ Sbjct: 403 IVFDLETTGLNPKEDEIIEIGAIK-MKGNEILETFSSFVKPQ-KELSSLITSLTGITEDM 460 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTLS 128 L + + EF F + +AHNA FD GFI N+ + D P IDTL+ Sbjct: 461 LSGAGTIKQVLPEFTKF--AEGGILVAHNASFDYGFIRNSVKKYFGGDWEMPC--IDTLA 516 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ + + L+++ KR + + H H A D+ + ++V K + Sbjct: 517 LAKSLYRAKSYSLDNVVKR--LKLGHFDHHRAYEDAKVTAEVLKKFL 561 >gi|258545959|ref|ZP_05706193.1| ribonuclease T [Cardiobacterium hominis ATCC 15826] gi|258518837|gb|EEV87696.1| ribonuclease T [Cardiobacterium hominis ATCC 15826] Length = 212 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 99/200 (49%), Gaps = 22/200 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G D+K D ++E+ AV L+++ + R T + P G PEALK+ Sbjct: 16 VVIDVETGGFDAKKDALLELAAV-LVNFDENQRLCRTHTIHYHIHPFPGANIDPEALKIT 74 Query: 64 GITDEFLKDKPSFSS------IFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN 114 GI D + +P++ F E + +Q + HNA FD+GFINA +R + Sbjct: 75 GI-DPYHPLRPAYHEDKAAERFFDEIRAYQKQQECTRSILVGHNATFDLGFINALAERTD 133 Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++P P ++DT+S+ + + L + ++ G HGA D+ L +D++ Sbjct: 134 YKRNPFHPFSVLDTVSLGALAY--GQTVLARIARQGGFEYDSSKAHGAKYDAELTADIFC 191 Query: 173 KMM-VGGSQINFGFKTNEDR 191 ++ ++ + + +E++ Sbjct: 192 HIVNTWAEKVGYSWPASEEQ 211 >gi|227432323|ref|ZP_03914316.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351929|gb|EEJ42162.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 1437 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 8/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL + DRIIE+ AV+ + F ++ P G S KL ITD Sbjct: 420 VAFDLETTGLSAVTDRIIELSAVK-MQLGNVIEKFSEYINP-GFLLSEFTTKLTSITDAM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + + +I F ++ NA + HN FDVGF+NA R N+ P+ + IIDTL Sbjct: 478 VANSDTEENIIKRFREW--SGNAVLVGHNVTFDVGFMNAAYTRYNQ-PIITNAIIDTLPF 534 Query: 130 ARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHL 166 R +P ++ L ++ KR+ I + +HR+ A H+ Sbjct: 535 TRWLYPDYKSYRLGTIAKRFNINLEQAHRAIFDAETTGHI 574 >gi|269123116|ref|YP_003305693.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM 12112] gi|268314442|gb|ACZ00816.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM 12112] Length = 1465 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 94/167 (56%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG ND+IIEIGAV+L + +R F F+ P + ++L GI D Sbjct: 405 VVFDIETTGFSPINDKIIEIGAVKLKNGKVLDR-FSEFVNPQTII-PKKIVELTGINDNM 462 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD + F +F + +AHNAKFDVGFI+ + + +N + D S IDTL Sbjct: 463 VKDSDIIDKVMPRFLEFV--KGTTLVAHNAKFDVGFISKKCEDLNLET-DFSY-IDTLEW 518 Query: 130 AR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ R +L++L KR+ I + + H A+ D++ ++++ K++ Sbjct: 519 SKILVDDVKRFNLDTLTKRFNIKLENH--HRAVDDANATAELFKKLL 563 >gi|302875356|ref|YP_003843989.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] gi|307688937|ref|ZP_07631383.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] gi|302578213|gb|ADL52225.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] Length = 867 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 77/137 (56%), Gaps = 6/137 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+E+TG D D II+I A+ + + +F+ FL P +K+ + +HG +DEF Sbjct: 502 IVFDVESTGTDVTEDEIIQIAAIRINRNGEVIDSFERFLKP--KKSVKNSEHIHGFSDEF 559 Query: 70 LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+K ++ EF F +NA + HN ++D+ +++E+ R+N DTL Sbjct: 560 LKEKGEDKETVIKEFLRF--SENAVIVGHNVQYDINILSSEIHRLNLGKSKFLAFYDTLD 617 Query: 129 IARRKHPSSRN-DLNSL 144 I RR +P+ N LN+L Sbjct: 618 IYRRFYPNLVNHKLNTL 634 >gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 1_1_41FAA] gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 1_1_41FAA] Length = 1449 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 8/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL+S ++IIEIGAV++ +R Q L G ++ IT+E Sbjct: 423 VVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDRYSQ--LINPGISIPYHITEITSITNEQ 480 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P + +F +F +A +AHNA FD+GFI +++ L+ S +IDTL + Sbjct: 481 VANQPKIDEVIGKFVEFIG--DAVLVAHNAPFDMGFIKRDIKEYLNIDLECS-VIDTLQM 537 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 AR P + L L K G+ + H A+ DS ++++I Sbjct: 538 ARDLFPDFKKYGLGDLNKALGLALEKH--HRAVDDSQATANMFI 579 >gi|90408002|ref|ZP_01216174.1| putative DNA polymerase III [Psychromonas sp. CNPT3] gi|90310846|gb|EAS38959.1| putative DNA polymerase III [Psychromonas sp. CNPT3] Length = 210 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 10/179 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL ++ DR IEIGAV +++ T++ FQ + P R NS GIT+ Sbjct: 10 VVLDFETTGLSPNQGDRAIEIGAVRIVNGEVTDQ-FQALMNPGIRVNSFIE-DYTGITNH 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ S S + ++F DF + N +AHNA FD F++ EL I++ +L Sbjct: 68 MLKEAASCSDVMAQFCDFIGDDN--LLAHNASFDKKFLDNELDEISRTY--QGEFTCSLL 123 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++RR + S++ L +L K+ ++ H AL D+ + + +++ M+ SQ +G K Sbjct: 124 VSRRINIDSQSHSLGNLVKQLNLS-EEGGFHRALFDAQMTAKLWLHMLDNISQ-TYGIK 180 >gi|116513078|ref|YP_811985.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris SK11] gi|116108732|gb|ABJ73872.1| DNA polymerase III catalytic subunit, PolC type [Lactococcus lactis subsp. cremoris SK11] Length = 1635 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G + S +L GITD+ Sbjct: 594 VVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDDH 651 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + ++F F + +AHNA FDVGF+N R N P+ ++DTL Sbjct: 652 VKNAKPLYEVLTKFQKFC--EGTILVAHNASFDVGFMNMNYSR-NGLPIISQPVVDTLEF 708 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 AR +P R L L K++ I + H H A D+ Sbjct: 709 ARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDA 742 >gi|125625168|ref|YP_001033651.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris MG1363] gi|124493976|emb|CAL98973.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp. cremoris MG1363] gi|300071977|gb|ADJ61377.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris NZ9000] Length = 1635 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G + S +L GITD+ Sbjct: 594 VVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDDH 651 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + ++F F + +AHNA FDVGF+N R N P+ ++DTL Sbjct: 652 VKNAKPLYEVLTKFQKFC--EGTILVAHNASFDVGFMNMNYSR-NGLPIISQPVVDTLEF 708 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 AR +P R L L K++ I + H H A D+ Sbjct: 709 ARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDA 742 >gi|15674106|ref|NP_268281.1| DNA polymerase III PolC [Lactococcus lactis subsp. lactis Il1403] gi|12725180|gb|AAK06222.1|AE006440_8 DNA polymerase III, alpha chain [Lactococcus lactis subsp. lactis Il1403] Length = 1658 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G + S +L GITD+ Sbjct: 617 VVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDDH 674 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + ++F F + +AHNA FDVGF+N R N P+ ++DTL Sbjct: 675 VKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSR-NGLPIITQPVVDTLEF 731 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 AR +P R L L K++ I + H H A D+ Sbjct: 732 ARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDA 765 >gi|307717322|gb|ADN88714.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717324|gb|ADN88715.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717408|gb|ADN88757.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717412|gb|ADN88759.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717418|gb|ADN88762.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] Length = 231 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 12/155 (7%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + F E +A+ +AHNA FD+GFIN +++ P + ++DTL +A Sbjct: 59 SDPIEVVLQRF----KEWSADDILVAHNASFDMGFINTAYEKVGI-PKAKNAVVDTLELA 113 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 114 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146 >gi|13959345|sp|Q9CDT7|DPO3_LACLA RecName: Full=DNA polymerase III polC-type; Short=PolIII Length = 1638 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G + S +L GITD+ Sbjct: 597 VVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDDH 654 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + ++F F + +AHNA FDVGF+N R N P+ ++DTL Sbjct: 655 VKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSR-NGLPIITQPVVDTLEF 711 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 AR +P R L L K++ I + H H A D+ Sbjct: 712 ARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDA 745 >gi|322390849|ref|ZP_08064359.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903] gi|321142519|gb|EFX37987.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903] Length = 1464 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 6/151 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N+ +VFD+ETTGL + + +I++ A ++ F F+ P G S +L G Sbjct: 422 NEATYVVFDVETTGLSAIYNDLIQVAASKMYK-GNVIEEFDEFIDP-GHPLSAFTTQLTG 479 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E ++ + EF F + +AHNA FDVGF+NA +R + P +I Sbjct: 480 ITNEHVRGAKPLVQVLKEFQAFC--EGTVLVAHNATFDVGFMNANYER-HGLPKITQPVI 536 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISH 154 DTL AR +P R+ L L KR+G+ + H Sbjct: 537 DTLEFARNLYPDFKRHGLGPLTKRFGVGLEH 567 >gi|312868001|ref|ZP_07728205.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parasanguinis F0405] gi|311096405|gb|EFQ54645.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parasanguinis F0405] Length = 1464 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 6/151 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N+ +VFD+ETTGL + + +I++ A ++ F F+ P G S +L G Sbjct: 422 NEATYVVFDVETTGLSAIYNDLIQVAASKMYK-GNVIEEFDEFIDP-GHPLSAFTTQLTG 479 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E ++ + EF F + +AHNA FDVGF+NA +R + P +I Sbjct: 480 ITNEHVRGAKPLVQVLKEFQAFC--EGTVLVAHNATFDVGFMNANYER-HGLPKITQPVI 536 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISH 154 DTL AR +P R+ L L KR+G+ + H Sbjct: 537 DTLEFARNLYPDFKRHGLGPLTKRFGVGLEH 567 >gi|296877258|ref|ZP_06901298.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912] gi|296431778|gb|EFH17585.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912] Length = 1464 Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 6/151 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N+ +VFD+ETTGL + + +I++ A ++ F F+ P G S +L G Sbjct: 422 NEATYVVFDVETTGLSAIYNDLIQVAASKMYK-GNVIEEFDEFIDP-GHPLSAFTTQLTG 479 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E ++ + EF F + +AHNA FDVGF+NA +R + P +I Sbjct: 480 ITNEHVRGAKPLVQVLKEFQAFC--EGTVLVAHNATFDVGFMNANYER-HGLPKITQPVI 536 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISH 154 DTL AR +P R+ L L KR+G+ + H Sbjct: 537 DTLEFARNLYPDFKRHGLGPLTKRFGVGLEH 567 >gi|83311148|ref|YP_421412.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] gi|82945989|dbj|BAE50853.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 216 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 89/196 (45%), Gaps = 26/196 (13%) Query: 8 RKIVFDIETTGLDSKNDR--------------IIEIGAVELL---DYSKTNRTFQVFLCP 50 R I D ETTG +IEIG VELL D KT ++ + P Sbjct: 13 RLIAIDAETTGFRVPTAAEIKKMPKGLRLPGVMIEIGCVELLRGEDGWKTGESWHRRIQP 72 Query: 51 NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 G + ++ +HGIT LKD P F + EF F + +AH+A+ ++ F+N E Sbjct: 73 GG-PIAKASIAVHGITPAELKDAPQFRDVLDEFETFIGQDML--LAHSAENEIEFLNFEY 129 Query: 111 QRINKDPLDPSRIID-----TLSIARRKHPSSRNDLNSLCKRYGITISHR-SKHGALLDS 164 R+ + D D T ++R+ P L+ LC R I S R HGALLD+ Sbjct: 130 ARVGRCGFDDVIFSDNDFVCTQELSRQFFPGVPGSLDVLCDRLWIDRSDRFEHHGALLDA 189 Query: 165 HLLSDVYIKMMVGGSQ 180 L ++ ++KM G Q Sbjct: 190 ILTAEAFMKMAGGFVQ 205 >gi|307243879|ref|ZP_07526004.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678] gi|306492701|gb|EFM64729.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678] Length = 172 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 13/171 (7%) Query: 10 IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67 +V D+ETTGL N D IIEIG E+ + R + + PNG P + ++ IT+ Sbjct: 9 VVVDLETTGLSPFNGDEIIEIGVTEIKG-DRIYRNYSRLVKPNGF--IPSVITEITNITN 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++D + F F ++ IAHNAKFD+GF+N L+++N DP+D + I T+ Sbjct: 66 DMVQDALPLEDVLPNFRKFIGDRTI--IAHNAKFDIGFLNYYLEKMNLDPID--KYICTM 121 Query: 128 SIAR--RKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKM 174 + + +++ L + C YGI +HR+ L + L + + M Sbjct: 122 EMLKKNKEYKGKNKKLQTACDYYGILNENAHRADSDTLATAKLFMKIRLSM 172 >gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma australiense] gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma australiense] Length = 1530 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG S D+IIEI V+ + + K + FQ + P K S + + ITD+ Sbjct: 451 VVFDLETTGFSSTKDKIIEIAGVK-IKHGKKIQEFQALINPQ-EKLSQTIINITNITDDM 508 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ K + + +F +F +N +AHNA FD+ F+ +++ + P +IDT+++ Sbjct: 509 LEGKNTIDQVLPDFLNFI--ENCILVAHNATFDITFLKEKIKELGI-AYKPQPVIDTMTL 565 Query: 130 ARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R L L + + + H AL D++ + V+IKM+ Sbjct: 566 SQRFFSEFLKYFSLKRLATVFKVKMEEH--HRALSDANTTAQVFIKMI 611 >gi|281492785|ref|YP_003354765.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis KF147] gi|281376437|gb|ADA65923.1| DNA polymerase III, alpha subunit [Lactococcus lactis subsp. lactis KF147] Length = 1638 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G + S +L GITD+ Sbjct: 597 VVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDDH 654 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + ++F F + +AHNA FDVGF+N R N P+ ++DTL Sbjct: 655 VKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSR-NGLPIITQPVVDTLEF 711 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 AR +P R L L K++ I + H H A D+ Sbjct: 712 ARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDA 745 >gi|148543926|ref|YP_001271296.1| DNA polymerase III PolC [Lactobacillus reuteri DSM 20016] gi|184153322|ref|YP_001841663.1| DNA polymerase III PolC [Lactobacillus reuteri JCM 1112] gi|227364835|ref|ZP_03848882.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3] gi|325682539|ref|ZP_08162056.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A] gi|166918295|sp|A5VJD5|DPO3_LACRD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|148530960|gb|ABQ82959.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus reuteri DSM 20016] gi|183224666|dbj|BAG25183.1| DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112] gi|227070098|gb|EEI08474.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3] gi|324978378|gb|EGC15328.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A] Length = 1443 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL + D++IE+ AV++ D + R F F+ P G S + L IT E Sbjct: 427 VIFDVETTGLSAIYDKVIELSAVKMQDGNVLER-FDEFIDP-GFPLSEQTTNLTSITTEM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + +F F DF + HN FD+GF+N +R + +IDTL + Sbjct: 485 VQGSKTEEEVFQMFKDFC--KGCIIAGHNVSFDMGFMNTGYERHQMGKI-AEPVIDTLPL 541 Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167 AR +P R LN+L K++ + + HR+ + + HLL Sbjct: 542 ARFLYPDMRGYRLNTLSKKFKVALEHHHRANYDSEATGHLL 582 >gi|168334980|ref|ZP_02693097.1| DNA polymerase III, alpha subunit [Epulopiscium sp. 'N.t. morphotype B'] Length = 1454 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 101/169 (59%), Gaps = 13/169 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 ++FD+ETTGL S +++IIEIGAV++ + K TF F+ P + PE + +L GIT Sbjct: 437 VIFDLETTGLSSSSNKIIEIGAVKIRN-GKIIDTFSSFVNP--ETDIPEHITELTGITTT 493 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTL 127 + D P+ +++ +F +F +A +AHNA FD+GFI L ++ ++ IDT+ Sbjct: 494 DIADAPTIAAVLPQFVEFC--ASAILVAHNADFDMGFI---LHNTRDLAIEFNKTYIDTV 548 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 S+AR P+ N L+++ + + +S ++ H A+ D+ +++++K + Sbjct: 549 SMARILLPNLGNAKLSNIANK--LKVSLKNHHRAVDDASATAEIFLKFI 595 >gi|329942403|ref|ZP_08291213.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|332287044|ref|YP_004421945.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|313847640|emb|CBY16628.1| putative DNA polymerase III epsilon chain [Chlamydophila psittaci RD1] gi|325507354|gb|ADZ18992.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|328815313|gb|EGF85301.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|328914277|gb|AEB55110.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC] Length = 249 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 5/154 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D E TGLD K DRIIE A+ + + + + + P+ R S E+ ++H I+D Sbjct: 10 VCLDCEMTGLDVKKDRIIEFAAIRF-TFDRVIDSMETLINPD-RVISAESQRIHHISDAM 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LKD+P + +F + F E + + H+ FD+ ++ E +RI + L +IDTL + Sbjct: 68 LKDQPRIAEVFPKIKSFLKEGDY-IVGHSVGFDLQVLSQEAERIGESFLSKYYVIDTLRL 126 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 A+ S N L +L + + + H A+ D Sbjct: 127 AKEYGDSPNNSLEALAVHF--NVPYDGNHRAMKD 158 >gi|307717410|gb|ADN88758.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis] gi|307717414|gb|ADN88760.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis] gi|307717416|gb|ADN88761.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis] Length = 231 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 12/155 (7%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + F E +A+ +AHNA FD+GFIN +++ P + ++DTL +A Sbjct: 59 SDPIDVVLQRF----KEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELA 113 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 114 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146 >gi|171056929|ref|YP_001789278.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6] gi|170774374|gb|ACB32513.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6] Length = 731 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 12/169 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSPEALKLHGITD 67 VFD ETTGL+ S D II+IGA + K R +F+ + P R P + +HGI Sbjct: 543 VFDTETTGLNPSDGDEIIQIGATRI-SGGKLRRQESFEQLVDPQ-RPIPPAGIPIHGIKP 600 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + +P+ + F F Q+ +AHNA FD+ F+ + R P ++DTL Sbjct: 601 DMVAGQPTIDHVLPAFHAF--AQDTVLVAHNAAFDMRFLQLKQDRTGLVFDQP--VLDTL 656 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ HP+ + L ++ +R+ IT+ R H AL D+ + ++V+++++ Sbjct: 657 LLSAVVHPNQESHRLEAIAERFSITVVGR--HTALGDAMVTAEVFVRLI 703 >gi|116617801|ref|YP_818172.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096648|gb|ABJ61799.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 1437 Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL + DRIIE+ AV+ + F ++ P G S KL ITD Sbjct: 420 VAFDLETTGLSAVTDRIIELSAVK-MQLGNVIEKFSEYINP-GFPLSEFTTKLTSITDAM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + + +I F ++ NA + HN FDVGF+NA R N+ P+ + IIDTL Sbjct: 478 VANSDTEENIIKRFREW--SGNAVLVGHNVTFDVGFMNAAYTRYNQ-PIITNAIIDTLPF 534 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 R +P ++ L ++ KR+ I + H A+ D+ Sbjct: 535 TRWLYPDYKSYRLGTIAKRFNINLEQ--AHRAIFDA 568 >gi|194467743|ref|ZP_03073729.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23] gi|194452596|gb|EDX41494.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23] Length = 1443 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL + D++IE+ AV++ D + R F F+ P G S + L IT E Sbjct: 427 VIFDVETTGLSAIYDKVIELSAVKMQDGNVLER-FDEFIDP-GFPLSEQTTNLTSITTEM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + +F F DF + HN FD+GF+N +R + +IDTL + Sbjct: 485 VQGSKTEEEVFQMFKDFC--KGCIIAGHNVAFDMGFMNTGYERHQMGKI-AEPVIDTLPL 541 Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167 AR +P R LN+L K++ + + HR+ + + HLL Sbjct: 542 ARFLYPDMRGYRLNTLSKKFKVALEHHHRANYDSEATGHLL 582 >gi|227544953|ref|ZP_03975002.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300910016|ref|ZP_07127476.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112] gi|227185064|gb|EEI65135.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300892664|gb|EFK86024.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112] Length = 1443 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGL + D++IE+ AV++ D + R F F+ P G S + L IT E Sbjct: 427 VIFDVETTGLSAIYDKVIELSAVKMQDGNVLER-FDEFIDP-GFPLSEQTTNLTSITTEM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + +F F DF + HN FD+GF+N +R + +IDTL + Sbjct: 485 VQGSKTEEEVFQMFKDFC--KGCIIAGHNVAFDMGFMNTGYERHQMGKI-AEPVIDTLPL 541 Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167 AR +P R LN+L K++ + + HR+ + + HLL Sbjct: 542 ARFLYPDMRGYRLNTLSKKFKVALEHHHRANYDSEATGHLL 582 >gi|254463814|ref|ZP_05077225.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacterales bacterium Y4I] gi|206684722|gb|EDZ45204.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacterales bacterium Y4I] Length = 469 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 7/173 (4%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + + +VFD ETTGL D I++IGA+ ++ + F + P G + K+H Sbjct: 273 SNLSYVVFDTETTGLLPHKDEIVQIGALRVVRNRIVAGEQFGTLVDP-GTPIPAASTKVH 331 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+D ++ P F F +A +AHNA FD+ F+ +R P + Sbjct: 332 GISDAMVQGAPDIGQAARAFHRF--ASDAVIVAHNAPFDMAFLRRHAKRAGVSWDQP--V 387 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ ++ +S++ L++LC+R +TI +H A+ D+ ++V+ KM+ Sbjct: 388 LDTVLLSAVLFGASQSHTLDALCERLEVTIPPALRHTAMGDAQATAEVFCKML 440 >gi|314929290|gb|EFS93121.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL044PA1] Length = 597 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG + +I EIGAV++ + FQ +CP G P +++ L GITD Sbjct: 33 CVVDLETTG-TGEGAQITEIGAVKVRG-GRVEGEFQTLVCPTG--PIPASVQVLTGITDA 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P S++ + +F ++ +AHNA+FD+GF+ + N DP+ ++DTL+ Sbjct: 89 MVRPAPPLSAVLPSWSEF--SRSTVLVAHNARFDIGFLKRAYAQHNYPWGDPT-LVDTLA 145 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T S H AL D+ DV ++ VG +F Sbjct: 146 LARSVLSRGEVRNYKLSTLSQLFRTTTM--SSHRALADARATVDVLHGLIERVG----SF 199 Query: 184 GFKTNED 190 G T ED Sbjct: 200 GVTTLED 206 >gi|307717400|gb|ADN88753.1| DNA polymerase III [Listeria seeligeri] Length = 231 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 12/155 (7%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + F E +A+ +AHNA FD+GFIN +++ P + ++DTL +A Sbjct: 59 SDPIDVVLKRF----KEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELA 113 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 114 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146 >gi|313837498|gb|EFS75212.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA2] gi|314971705|gb|EFT15803.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA3] gi|328906955|gb|EGG26721.1| GIY-YIG catalytic domain protein [Propionibacterium sp. P08] Length = 598 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG + +I EIGAV++ + FQ +CP G P +++ L GITD Sbjct: 34 CVVDLETTG-TGEGAQITEIGAVKVRG-GRVEGEFQTLVCPTG--PIPASVQVLTGITDA 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P S++ + +F ++ +AHNA+FD+GF+ + N DP+ ++DTL+ Sbjct: 90 MVRPAPPLSAVLPSWSEF--SRSTVLVAHNARFDIGFLKRAYAQHNYPWGDPT-LVDTLA 146 Query: 129 IARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +AR RN L++L + + T S H AL D+ DV ++ VG +F Sbjct: 147 LARSVLSRGEVRNYKLSTLSQLFRTTTM--SSHRALADARATVDVLHGLIERVG----SF 200 Query: 184 GFKTNED 190 G T ED Sbjct: 201 GVTTLED 207 >gi|307717334|gb|ADN88720.1| DNA polymerase III [Listeria seeligeri] gi|307717336|gb|ADN88721.1| DNA polymerase III [Listeria seeligeri] gi|307717366|gb|ADN88736.1| DNA polymerase III [Listeria seeligeri] gi|307717402|gb|ADN88754.1| DNA polymerase III [Listeria seeligeri] gi|307717406|gb|ADN88756.1| DNA polymerase III [Listeria seeligeri] Length = 231 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 12/155 (7%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + F E +A+ +AHNA FD+GFIN +++ P + ++DTL +A Sbjct: 59 SDPIDVVLKRF----KEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELA 113 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 114 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146 >gi|307717332|gb|ADN88719.1| DNA polymerase III [Listeria seeligeri] Length = 231 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 12/155 (7%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + F E +A+ +AHNA FD+GFIN +++ P + ++DTL +A Sbjct: 59 SDPIDVVLKRF----KEWSADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELA 113 Query: 131 RRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 R +P +N LN+L K++ I + H A+ D+ Sbjct: 114 RFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146 >gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM 6725] gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM 6725] Length = 1402 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTG DS+ DRIIEIGAV++ + T R F F+ P G K +L GI + Sbjct: 391 VVVDIETTGFDSQRDRIIEIGAVKIENGQITER-FSTFVDPEG-KIPVRISELTGIYQDM 448 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P S EF F + +AHNA+FD+GF+ Q + IDTL + Sbjct: 449 VDKAPKLSDAILEFEKF--ASGSVLVAHNAQFDIGFLKKAYQECGI--IFDYTYIDTLEL 504 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +RR S + LN + + I + H H A D+ + ++I ++ Sbjct: 505 SRRLLTDLSSHKLNKVAEFLNIELKHH--HRADSDAETTAGIFISLV 549 >gi|188518224|ref|ZP_03003759.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188998138|gb|EDU67235.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 11 str. ATCC 33695] Length = 1442 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL D IIE GA+ + + + Q F+ P N L I+ E Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNISQEM 468 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127 + D + + + F N +AHN FD+ FIN L + +PL +PS IDTL Sbjct: 469 VNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLKNPS--IDTL 524 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I+R +P + L ++CK+Y + + H A D+ +L+DV+ Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568 >gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814] gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814] Length = 1513 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 15/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 +VFD+ETTG D+IIEIGAV+ +++ + F F+ P + P + +L ITD+ Sbjct: 471 VVFDLETTGFSPIKDKIIEIGAVK-VEHGEITDKFSTFVNP--KVPIPFQITQLTSITDQ 527 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDT 126 + P ++ +F +F +A +AHNA FDV FI N Q I D +DT Sbjct: 528 MVIGAPDIETVLPQFLEFIG--DAALVAHNASFDVSFIEQNCRYQDIQPDFTS----VDT 581 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++AR P+ S+ LN + + IS + H A+ D+ +++++K + Sbjct: 582 VAMARILLPTLSKYKLNVVAN--ALHISLENHHRAVDDAGATAEIFVKFV 629 >gi|307717344|gb|ADN88725.1| DNA polymerase III [Listeria innocua] gi|307717350|gb|ADN88728.1| DNA polymerase III [Listeria innocua] gi|307717352|gb|ADN88729.1| DNA polymerase III [Listeria innocua] gi|307717386|gb|ADN88746.1| DNA polymerase III [Listeria innocua] Length = 231 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 85/153 (55%), Gaps = 8/153 (5%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + +F ++ + +AHNA FD+GFIN +++ + + + ++DTL +AR Sbjct: 59 SDPIDVVLKQFREWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAN-NAVVDTLELARF 115 Query: 133 KHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 +P +N LN+L K++ I + H A+ D+ Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146 >gi|258653407|ref|YP_003202563.1| hypothetical protein Namu_3243 [Nakamurella multipartita DSM 44233] gi|258556632|gb|ACV79574.1| DNA polymerase III, epsilon subunit [Nakamurella multipartita DSM 44233] Length = 613 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 6/162 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + I EIGAV++ + F + P GR P+ L GIT+ Sbjct: 50 VVVDLETTGGSPATEAITEIGAVKVRG-GQVLGEFATLVDP-GRTIPPQITMLTGITNAM 107 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P SS+ F +F + + +AHNA+FDVGF+ A R + P ++DT+ + Sbjct: 108 VYDAPRISSVLPAFLEF--ARGSVLVAHNARFDVGFLRAACAR-QQVPWPGPAVVDTVRL 164 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 AR+ P + + + R H AL D+ DV Sbjct: 165 ARKVLPRAEAPSVRLSALAALLGARTRPDHRALTDARATVDV 206 >gi|325661635|ref|ZP_08150259.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472162|gb|EGC75376.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium 4_1_37FAA] Length = 238 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 82/161 (50%), Gaps = 11/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL + D IIEIGAV++ D T+R F FL P + SP ++ GIT+E Sbjct: 6 VAFDLETTGLSEERDSIIEIGAVKVTDGKVTDR-FMEFLKP-AEEISPMITQITGITNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + + +F F E+ + HN FD F+ + R IDTL I Sbjct: 64 VAHARNTKEVIDDFMGFCGEEV--LLGHNILFDYKFMKRYACKYQHS--FERRGIDTLKI 119 Query: 130 ARRKHP--SSRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166 AR+ H SR+ L +LC Y I +HR+ H AL + L Sbjct: 120 ARKVHKDLESRS-LEALCVHYQIKNDAAHRAYHDALATAKL 159 >gi|15616303|ref|NP_244608.1| hypothetical protein BH3741 [Bacillus halodurans C-125] gi|10176365|dbj|BAB07460.1| BH3741 [Bacillus halodurans C-125] Length = 219 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 7/165 (4%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD ETTG DR+IE+ AV + T+ TFQ ++ P R E +L GI+++ Sbjct: 29 VFDTETTGFAVGAGDRLIEVAAVHVEGLEVTDFTFQTYVNPE-RNIPAEIEELTGISEDK 87 Query: 70 LKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ P+ F+ F + +A W+ H A FDV + ELQR L+ + DTL Sbjct: 88 VKNAPASLPAIESFFRFVEQSGSAAWVGHYASFDVTVLKKELQRYQFS-LNVPLLFDTLD 146 Query: 129 IARRKHPSS-RNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDV 170 + PS DL K++G I H++ AL +HL ++ Sbjct: 147 LIGYISPSKDMRDLEVYAKQFGTYIYERHQALGDALTTAHLFCEL 191 >gi|104161981|emb|CAJ75690.1| DNA polymerase III, alpha subunit [uncultured Thermotogales bacterium] Length = 1428 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL+ K D IIEIGA++ + S+ T+ F+ P ++ S L GIT++ Sbjct: 419 LVFDLETTGLNPKEDEIIEIGAIK-MKGSEVLGTYSTFVKPE-KELSAMITSLTGITEDM 476 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTLS 128 L + + EF F + +AHNA FD GF+ N+ + D P IDTL+ Sbjct: 477 LSEARPIKEVLPEFTKF--TEGCILVAHNASFDYGFVRNSVKKHFGGDWEMPC--IDTLA 532 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ S L+++ KR + + H H A D+ + ++V K + Sbjct: 533 LAKSLFRSKSYSLDNVVKR--LKLGHFDHHRAFEDAKVTAEVLKKFV 577 >gi|317132568|ref|YP_004091882.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3] gi|315470547|gb|ADU27151.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3] Length = 1457 Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL+ +NDRI EIGAV + + + F +F+ P+ + P +L GITD+ Sbjct: 444 VAFDLETTGLNRENDRITEIGAVRIRN-GEIGERFDLFVNPH-KPIPPRITELTGITDDM 501 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD +F+ F + A +AHNA+FD GF A R + P +D++ + Sbjct: 502 VKDAAEEDEALRQFFAFCGD--AVLVAHNAEFDTGFCRAAAARCGME--FPYTYMDSIPL 557 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R P +N L+++ G+ + + H A D+ +L + ++++ Sbjct: 558 CRTVLPGLKNYKLDTVAG--GLHLPPFNHHRASDDAFVLGQILVQVL 602 >gi|188524415|ref|ZP_03004436.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273773|ref|ZP_03206307.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195659873|gb|EDX53253.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249528|gb|EDY74310.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 1442 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL D IIE GA+ + + + Q F+ P N L I+ E Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNISQEM 468 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127 + D + + + F N +AHN FD+ FIN L + +PL +PS IDTL Sbjct: 469 VNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLKNPS--IDTL 524 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I+R +P + L ++CK+Y + + H A D+ +L+DV+ Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568 >gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2] gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2] Length = 1367 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGLD + D IIEIGAV++ D + + + P+ R+ S + ++ GIT E Sbjct: 359 VVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDE-YHTLIKPS-REISRRSSEITGITQEM 416 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128 L++K S + EF F +N+ +AHNA FD F+ ++++ LD R IDTL+ Sbjct: 417 LENKRSIEEVLPEFLGFL--ENSIIVAHNANFDYRFLRLWIKKVMG--LDWERPYIDTLA 472 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ L+S+ ++ G + H AL D+ + + V+++ + Sbjct: 473 LAKSLLKMRSYSLDSVVEKLG--LGPFRHHRALDDARVTAQVFLRFV 517 >gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1] gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10] gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga petrophila RKU-1] gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10] Length = 1367 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGLD + D IIEIGAV++ D + + + P+ R+ S + ++ GIT E Sbjct: 359 VVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDE-YHTLIKPS-REISRRSSEITGITQEM 416 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128 L++K S + EF F +N+ +AHNA FD F+ ++++ LD R IDTL+ Sbjct: 417 LENKRSIEEVLPEFLGFL--ENSIIVAHNANFDYRFLRLWIKKVMG--LDWERPYIDTLA 472 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ L+S+ ++ G + H AL D+ + + V+++ + Sbjct: 473 LAKSLLKMRSYSLDSVVEKLG--LGPFRHHRALDDARVTAQVFLRFV 517 >gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M] gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M] Length = 1571 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 19/173 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D+IIEI V++ +K FQ F+ P +K + + ITDE Sbjct: 482 VVFDLETTGLSNVRDKIIEIAGVKIKKGNKIGE-FQKFIDPQ-QKLTKTITDITNITDEM 539 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ + + + +F F ++ +AHNA FD+ F+ + + + K L+P IIDT+++ Sbjct: 540 LQGQQTIDQVLPQFLAF--AKDCVLVAHNASFDINFLKEKAKEL-KISLEPQPIIDTMAL 596 Query: 130 ARRKHPSSRNDLNSLCKRYGI-------TISHRSKHGALLDSHLLSDVYIKMM 175 ++R ++L K + + + H AL D+ ++++IKM+ Sbjct: 597 SQRY-------FSNLLKYFSLKRLATFFKVKLEDHHRALADATATAEIFIKMI 642 >gi|302872252|ref|YP_003840888.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis OB47] gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis OB47] Length = 1402 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTG DS+ DRIIEIGAV++ + T R F F+ P G K +L GI + Sbjct: 391 VVVDIETTGFDSQRDRIIEIGAVKIENGQITER-FSTFVDPEG-KIPVRISELTGIYQDM 448 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P S EF F + +AHNA+FD+GF+ Q + IDTL + Sbjct: 449 VDKAPKLSDAILEFERF--ASGSVLVAHNAQFDIGFLKKAYQECG--IIFDYTYIDTLEL 504 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +RR S + LN + + + + H H A D+ ++++I ++ Sbjct: 505 SRRLLTDLSSHKLNKVAEFLNVELKHH--HRADSDAETTANIFISLV 549 >gi|226941443|ref|YP_002796517.1| DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9] gi|226716370|gb|ACO75508.1| Probable DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9] Length = 493 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 19/178 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTG DRI EIG VE + + T R Q L G+ P ++ GI+D Sbjct: 7 VIVDLETTGGHITRDRITEIGLVE-VSHGVTTRWSQ--LVNPGQPIPPFIEEMTGISDAM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSRIID 125 + + P F+ + N + IAHNA+FD GF+ E +R+ DPL Sbjct: 64 VAEAPPFAELAPALLARLNGKL--LIAHNARFDYGFLKNEFRRLGLTFTTDPL------C 115 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 T+ ++RR +P +++ L+SL R+GI + +H AL D+ VY+ + +++ Sbjct: 116 TVKLSRRLYPQHAKHSLDSLIARHGIDVPPGMRHRALGDAE---AVYVFLQTAVAELG 170 >gi|148255092|ref|YP_001239677.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1] gi|146407265|gb|ABQ35771.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1] Length = 720 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTG S DRI EIGAV++ ++ + + P R + ++L GIT++ Sbjct: 547 VVVDIETTGSWSSGDRITEIGAVKVRNHQIVEE-WHSLINPQ-RPIPAKIVELTGITNQM 604 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D P F I F F + ++AHN FD GF++ E +R+ + P + T Sbjct: 605 VRDAPFFHDIADSFIAFMG--DGIFVAHNVNFDYGFLSYEYERLERRFRFPK--LCTCVG 660 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 RR++P ++ L LC YGI + H AL D+ Sbjct: 661 MRRRYPGHKSYGLGKLCAIYGIALD--DHHRALCDA 694 >gi|308807965|ref|XP_003081293.1| DNA helicase RecG (ISS) [Ostreococcus tauri] gi|116059755|emb|CAL55462.1| DNA helicase RecG (ISS) [Ostreococcus tauri] Length = 1259 Score = 75.5 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 64/183 (34%), Positives = 91/183 (49%), Gaps = 22/183 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 IVFD+ETTGL + RIIE+ A L D S F + P GR N P A+K L GIT+ Sbjct: 196 IVFDLETTGLSKEKSRIIELAAQSLTDPSA---AFSTLVNP-GRFNIPPAIKALTGITNS 251 Query: 69 FLK--DKPSFSSIFSEFWDFFNEQNAE--------WIAHNAK-FDVGFINAELQRINKDP 117 + D PSF+ +F + F EQ + +AHNA+ FD FI E +R+ ++ Sbjct: 252 MVSAPDVPSFAMAAEQF-EMFIEQVRQSRPGAPVLLVAHNARQFDAAFIQYEYRRLGREL 310 Query: 118 LDPSRIIDTLSIAR---RKHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYI 172 R DTL +AR R + ++ L Y I + H A D+ +L+D+ Sbjct: 311 PSSWRFCDTLPLARQLLRPDGLGKFSMDVLRGHYDIELEGGDVQMHRAGTDARVLADILN 370 Query: 173 KMM 175 KM+ Sbjct: 371 KML 373 >gi|62184729|ref|YP_219514.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3] gi|62147796|emb|CAH63542.1| putative DNA polymerase III epsilon chain [Chlamydophila abortus S26/3] Length = 249 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D E TGLD K DRIIE A+ + + + + P+ R S E+ ++H I+D Sbjct: 10 VCLDCEMTGLDVKKDRIIEFAAIRF-TFDSVIDSMETLINPD-RVISAESQRIHHISDAM 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LKD+P + +F + F E + + H+ FD+ ++ E +RI + L IIDTL + Sbjct: 68 LKDQPRIAEVFPKIKSFLKEGDY-IVGHSVGFDLQVLSQEAERIGETFLSKYYIIDTLRL 126 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 A+ S N L +L + + + H A+ D Sbjct: 127 AKEYGDSPNNSLEALAVHF--NVPYDGNHRAMKD 158 >gi|239995207|ref|ZP_04715731.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC 27126] Length = 711 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 9/170 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 IR +V DIETTG +S +RI EIG V+L+ + +R FQ L P R+ + Sbjct: 536 IRDPAQPYVVVDIETTGGNSSYNRITEIGMVKLVGGKEVDR-FQTLLNPQ-RRIPSNITR 593 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GI+D+ + D P F+ + +F ++A ++AHN FD GFI E R+ + P Sbjct: 594 LTGISDDMVADAPLFAEVAEHVANF--TEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPK 651 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + T+ RR +P L +L K + I + H AL D+ +++ Sbjct: 652 --MCTVREMRRTYPGLPSYSLANLTKHFHIEMEQH--HRALSDAKAAAEL 697 >gi|254502460|ref|ZP_05114611.1| exonuclease family [Labrenzia alexandrii DFL-11] gi|222438531|gb|EEE45210.1| exonuclease family [Labrenzia alexandrii DFL-11] Length = 471 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 13/170 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL D I++IGAV +++ R Q L GR P + K+HGI+D Sbjct: 281 VFDTETTGLMPNKDDIVQIGAVRVVNGRMVPGERIDQ--LVNPGRPIPPASSKVHGISDT 338 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLD-PSRIIDT 126 + D P ++F +F E + +AHNA FD+ F LQ+ K L+ P I+DT Sbjct: 339 MVADAPQPLEAVADFHEFARE--SVIVAHNAPFDLAF----LQKYGKVAGLEWPHPILDT 392 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++ S+ + L++LC+R I I +H AL D+ ++ K++ Sbjct: 393 VLLSAVVFGSNEVHTLDALCERLCIDIRPEVRHTALGDAEATAEALCKLL 442 >gi|332365809|gb|EGJ43566.1| DNA polymerase III PolC [Streptococcus sanguinis SK355] Length = 1462 Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 10/148 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTGL + + +I++ A ++ K N F F+ P G S L GITD Sbjct: 425 VVFDVETTGLSAVYNDLIQVAASKM---HKGNIIAEFDEFINP-GHPLSVFTTDLTGITD 480 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ + EF +F +++ +AHNA FDVGF+N +R + P +IDTL Sbjct: 481 EHVRNAKPLEQVLKEFQEFC--KDSVLVAHNATFDVGFMNVNYER-HGLPKITQPVIDTL 537 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISH 154 AR +P R+ L L KR+ I + H Sbjct: 538 EFARNLYPEYKRHGLGPLTKRFQIALEH 565 >gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL B-59395] gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL B-59395] Length = 623 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 16/186 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + +DRI EIGAV++ + F + P GR P+ + L GIT Sbjct: 60 VVVDLETTGGSADDDRITEIGAVKIRG-GEVLGEFATLVDP-GRAIPPQIVALTGITTAM 117 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + F +F + +AHNA+FD+GF+ R+ + P S + T+ + Sbjct: 118 LYDAPRIEEVLPAFAEF--ARGTVLVAHNARFDMGFLRKSAARM-RLPWPFSTSLCTVVM 174 Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFG 184 ARR + + L++L + + +++ R H AL D+ +V+ +++ VG N G Sbjct: 175 ARRILSRQEAPTVKLSALAELFQVSV--RPTHRALDDARATVEVFHRLLERVG----NQG 228 Query: 185 FKTNED 190 +T D Sbjct: 229 VQTVGD 234 >gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49] Length = 374 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 10/163 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG S RI EIG VE+ + T L G+ P +L GI++ Sbjct: 16 VFVDLETTGGSSVEHRITEIGVVEIGPLGVSTWTS---LVNPGQSIPPFIQQLTGISEAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ ++ + + ++AHNA FD GF+ AE +R +P ++ T+ + Sbjct: 73 VRDAPSFASLAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGLA-FNPD-VLCTVRL 128 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R P SR+ L++L +R+G+ + ++H AL D+ LL + Sbjct: 129 SRALFPRESRHGLDALIERHGLVPA--ARHRALADADLLWQFW 169 >gi|71279381|ref|YP_267529.1| exonuclease [Colwellia psychrerythraea 34H] gi|71145121|gb|AAZ25594.1| exonuclease [Colwellia psychrerythraea 34H] Length = 203 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D ETTGL N DR IEIGAV+L + T+R FQ + P GR S GIT+ Sbjct: 7 IILDFETTGLSPDNGDRAIEIGAVKLENGVVTDR-FQELMYP-GRPVSHFIADYTGITNV 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + F F QN +AHNA FD F+++EL+RI+ + +L Sbjct: 65 MLSKAAPCHEVMDRFSGFIQGQN--LVAHNASFDKRFLDSELKRISSGY--DGQFACSLL 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++RR + ++ N L +L GI S+ S H AL DS + + +++ M+ Sbjct: 121 LSRRLYQTAPNHKLGTLINYKGIA-SNGSFHRALYDSEMTAKLWVAML 167 >gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 [Actinosynnema mirum DSM 43827] gi|255919819|gb|ACU35330.1| DNA polymerase III, epsilon subunit [Actinosynnema mirum DSM 43827] Length = 578 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 14/171 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG + D I EIGAV++ + F + P R P+ + L GIT Sbjct: 32 VVFDLETTGPRAAEDGITEIGAVKVRG-GRVIGEFGTLVDPE-RGIPPQIVALTGITQNM 89 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P +S+ F +F + A +AHN+ FDVGF+ A +R P ++ T+ + Sbjct: 90 VTGAPVLASVLPAFLEF--AEGAVLVAHNSGFDVGFMKAACERHGYAWPKPP-VVCTVKL 146 Query: 130 ARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR + PS + L++L +G + H AL+D+ +V +++ Sbjct: 147 ARRVLSREEAPSCK--LSALSALFG--VPEAPNHRALVDARATVEVLHRLL 193 >gi|209554353|ref|YP_002284813.1| DNA polymerase III PolC [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541854|gb|ACI60083.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 1442 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 7/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL D IIE GA+ + + + Q F+ P N L I E Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNINQEM 468 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD-PSRIIDTL 127 + D + + + F N +AHN FD+ FIN L + +PL+ PS IDTL Sbjct: 469 VNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPS--IDTL 524 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I+R +P + L ++CK+Y + + H A D+ +L+DV+ Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568 >gi|195867849|ref|ZP_03079848.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660426|gb|EDX53684.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 1442 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 7/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL D IIE GA+ + + + Q F+ P N L I E Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNINQEM 468 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD-PSRIIDTL 127 + D + + + F N +AHN FD+ FIN L + +PL+ PS IDTL Sbjct: 469 VNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPS--IDTL 524 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I+R +P + L ++CK+Y + + H A D+ +L+DV+ Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568 >gi|171920838|ref|ZP_02932008.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903036|gb|EDT49325.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 1442 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 7/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL D IIE GA+ + + + Q F+ P N L I E Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNINQEM 468 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD-PSRIIDTL 127 + D + + + F N +AHN FD+ FIN L + +PL+ PS IDTL Sbjct: 469 VNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPS--IDTL 524 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I+R +P + L ++CK+Y + + H A D+ +L+DV+ Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568 >gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM 16841] gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM 16841] Length = 1512 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 95/172 (55%), Gaps = 19/172 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66 +VFD+ETTG ++IIEIGAV+++ T+R F F+ P P ++ +T Sbjct: 490 VVFDLETTGFSPDKNKIIEIGAVKVVGGVITDR-FSTFVNP----EVPIPFRIEELTSIK 544 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124 D+ + D P I EF F + A +AHNA+FD+ FI N + Q I ++ II Sbjct: 545 DDMVIDAPKIEEILPEFMKFC--EGAIMVAHNAEFDMSFIKKNCKDQGIERE----FTII 598 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+++AR P+ +R L+++ K + +S + H A+ D+ +++++K + Sbjct: 599 DTVALARILLPNLNRFKLDTVAK--ALNVSLENHHRAVDDAACTAEIFVKFI 648 >gi|225550655|ref|ZP_03771604.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379809|gb|EEH02171.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 1442 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 7/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL D IIE GA+ + + + Q F+ P N L I E Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNINQEM 468 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD-PSRIIDTL 127 + D + + + F N +AHN FD+ FIN L + +PL+ PS IDTL Sbjct: 469 VNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLENPS--IDTL 524 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I+R +P + L ++CK+Y + + H A D+ +L+DV+ Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568 >gi|307717354|gb|ADN88730.1| DNA polymerase III [Listeria innocua] Length = 231 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 20/159 (12%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +F EW +AHNA FD+GFIN +++ + + ++DT Sbjct: 59 SDPIDVVLKQF--------KEWSGDNILVAHNASFDMGFINTAYEKVGIEKA-KNAVVDT 109 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 L +AR +P +N LN+L K++ I + H A+ D+ Sbjct: 110 LELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146 >gi|307717346|gb|ADN88726.1| DNA polymerase III [Listeria innocua] gi|307717356|gb|ADN88731.1| DNA polymerase III [Listeria innocua] gi|307717358|gb|ADN88732.1| DNA polymerase III [Listeria innocua] gi|307717360|gb|ADN88733.1| DNA polymerase III [Listeria innocua] gi|307717374|gb|ADN88740.1| DNA polymerase III [Listeria innocua] gi|307717388|gb|ADN88747.1| DNA polymerase III [Listeria innocua] Length = 231 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 84/153 (54%), Gaps = 8/153 (5%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + +F ++ + +AHNA FD+GFIN +++ + + ++DTL +AR Sbjct: 59 SDPIDVVLKQFREWSGDDI--LVAHNASFDMGFINTAYEKVGLEKA-KNAVVDTLELARF 115 Query: 133 KHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 +P +N LN+L K++ I + H A+ D+ Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146 >gi|194467815|ref|ZP_03073801.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23] gi|194452668|gb|EDX41566.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23] Length = 283 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 89/163 (54%), Gaps = 11/163 (6%) Query: 10 IVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL D+II++ A++ +D K TF + P+G N+ +++ + I++ Sbjct: 16 VSVDTETTGLYPMYGDKIIQLSAIKYID-DKLVDTFDTLINPDGSNNNAKSV--NNISES 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK++P+F + +F +F ++ W+ HN FD F+ +E +I + +DTL Sbjct: 73 SLKNQPTFDEVIGDFVNFV--EDLPWVGHNLSFDFSFLKSEELKIASFKKNS---VDTLQ 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IAR + + N L L K++ I +++ H +L D+ + + +Y Sbjct: 128 IARSIYGNKGNKLQQLAKKFN--IDYKNLHNSLYDAQIAASLY 168 >gi|253579638|ref|ZP_04856907.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849139|gb|EES77100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1489 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 11/170 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGIT 66 R +VFDIETTG S +IIEIGAV + + T+R F F+ P + P + +L I Sbjct: 461 RFVVFDIETTGFSSLTCQIIEIGAVLVENGEITDR-FSTFVNP--KVPIPFRIEQLTSIN 517 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P+ + +F +F ++A +AHNA FD+GFI R+ +DT Sbjct: 518 DSMVMDAPTIEEVLPKFLEF--SKDAVMVAHNADFDMGFIMKNCDRLGI--AHDFTYVDT 573 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +AR P+ +R L+++ K G+++ + H A+ D+ +++++K + Sbjct: 574 VGMARFLLPALNRFKLDTVAKAVGVSLENH--HRAVDDAACTAEIFVKFV 621 >gi|307717320|gb|ADN88713.1| DNA polymerase III [Listeria monocytogenes] gi|307717330|gb|ADN88718.1| DNA polymerase III [Listeria monocytogenes] gi|307717378|gb|ADN88742.1| DNA polymerase III [Listeria monocytogenes] gi|307717380|gb|ADN88743.1| DNA polymerase III [Listeria monocytogenes] gi|307717394|gb|ADN88750.1| DNA polymerase III [Listeria monocytogenes] gi|307717396|gb|ADN88751.1| DNA polymerase III [Listeria monocytogenes] Length = 231 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 20/159 (12%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + F EW +AHNA FD+GFIN +++ + + + ++DT Sbjct: 59 SDPIDVVLKRF--------KEWSGDDILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDT 109 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 L +AR +P +N LN+L K++ I + H A+ D+ Sbjct: 110 LELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146 >gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359] gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359] Length = 1367 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 94/167 (56%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTGLD + D IIEIGAV++ + + + + P+G + A ++ GIT E Sbjct: 361 VVFDFETTGLDPQVDEIIEIGAVKIKE-GRIIDEYHTLIKPSGTISRKSA-EITGITQEM 418 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128 L+ + + + EF +F +++ +AHNA FD F+ ++++ KD P +DTL+ Sbjct: 419 LEGERAIEEVLPEFLEFL--EDSILVAHNANFDYRFLRLWIKKVLGKDWEKP--YVDTLA 474 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ L+S+ K+ G+ S R H AL D+ + + V+++ + Sbjct: 475 LAKSLLRLKSYSLDSVVKKLGLG-SFRH-HRALDDARVTAQVFLRFI 519 >gi|91789989|ref|YP_550941.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666] gi|91699214|gb|ABE46043.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666] Length = 729 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 10/168 (5%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL+ S D II+IGA+ +++ N T + P R+ PE++ +HGIT++ Sbjct: 541 VFDTETTGLEPSAGDEIIQIGAIRIVNGRLLRNETIDQLIDPR-RRLKPESIAIHGITED 599 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K +P+ F +F ++ +AHNA FD+ F+ +L+ + + ++DTL Sbjct: 600 MVKGQPTIEQALPAFHEFC--EDTVLVAHNAAFDMRFL--QLKEASTGIVFRQPVLDTLL 655 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ HP+ + L ++ R GI + R H AL D+ + ++++KM+ Sbjct: 656 LSALLHPNQESHRLEAIAGRLGINVIGR--HTALGDAIVTGEIFLKMI 701 >gi|307717326|gb|ADN88716.1| DNA polymerase III [Listeria monocytogenes] gi|307717328|gb|ADN88717.1| DNA polymerase III [Listeria monocytogenes] gi|307717342|gb|ADN88724.1| DNA polymerase III [Listeria marthii] gi|307717348|gb|ADN88727.1| DNA polymerase III [Listeria monocytogenes] gi|307717364|gb|ADN88735.1| DNA polymerase III [Listeria monocytogenes] gi|307717370|gb|ADN88738.1| DNA polymerase III [Listeria marthii] gi|307717372|gb|ADN88739.1| DNA polymerase III [Listeria marthii] gi|307717376|gb|ADN88741.1| DNA polymerase III [Listeria monocytogenes] gi|307717382|gb|ADN88744.1| DNA polymerase III [Listeria monocytogenes] gi|307717384|gb|ADN88745.1| DNA polymerase III [Listeria monocytogenes] gi|307717398|gb|ADN88752.1| DNA polymerase III [Listeria monocytogenes] gi|307717404|gb|ADN88755.1| DNA polymerase III [Listeria monocytogenes] Length = 231 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 20/159 (12%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + F EW +AHNA FD+GFIN +++ + + + ++DT Sbjct: 59 SDPIDVVLKRF--------KEWSGDDILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDT 109 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 L +AR +P +N LN+L K++ I + H A+ D+ Sbjct: 110 LELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDA 146 >gi|145219710|ref|YP_001130419.1| DNA polymerase III, epsilon subunit [Prosthecochloris vibrioformis DSM 265] gi|145205874|gb|ABP36917.1| DNA polymerase III, epsilon subunit [Chlorobium phaeovibrioides DSM 265] Length = 221 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 16/183 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 R +VFD ETTG D +NDR+I IGAV L + T +F+V + G E++ +HG+ Sbjct: 33 RFVVFDTETTGFDLQNDRVISIGAVALEGSAITIADSFEVLVRQPG-VGQKESVSVHGLL 91 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + S + F D+ N+ +A +A FDV +N L + + L + ++DT Sbjct: 92 KKDIASGVSERDGVTSFLDYIG--NSILVAQHASFDVAMLNRLLWELFRIRL-FNGVVDT 148 Query: 127 LSIARR---------KHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMM 175 S+A+R H + L+ LC+RYGI + H S A L + LL + K Sbjct: 149 ASLAKRLEKGPYHNLAHKAGEYRLDHLCQRYGIRLHDRHTSAGDAYLTAQLLQRLLAKGR 208 Query: 176 VGG 178 G Sbjct: 209 TAG 211 >gi|188024469|ref|ZP_02997117.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188018579|gb|EDU56619.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 7 str. ATCC 27819] Length = 1442 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 7/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL D IIE GA+ + + + Q F+ P N L I+ E Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNISQEM 468 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127 + D + + + F N +AHN FD+ FIN L + +PL +PS IDTL Sbjct: 469 VNDAIDEKTALLKIKEIF--ANHILVAHNGISFDINFINQRLLKWGLEPLKNPS--IDTL 524 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I R +P + L ++CK+Y + + H A D+ +L+DV+ Sbjct: 525 MILRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568 >gi|183508608|ref|ZP_02958116.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182676065|gb|EDT87970.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 1442 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL D IIE GAV + + + Q F+ P + N L I+ E Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFVKPIQQINE-NVTNLTNISQEM 468 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127 + + + + + F++ +AHN FD+ FIN L + +PL +PS IDTL Sbjct: 469 VNNAIDEKTALLKIKEIFDDH--ILVAHNGINFDINFINQRLLKWGLEPLKNPS--IDTL 524 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I+R +P + L ++CK+Y + + H A D+ +L+DV+ M Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEIAHRADYDAIVLTDVFKVM 571 >gi|332670685|ref|YP_004453693.1| DNA polymerase III subunit epsilon [Cellulomonas fimi ATCC 484] gi|332339723|gb|AEE46306.1| DNA polymerase III, epsilon subunit [Cellulomonas fimi ATCC 484] Length = 620 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + I EIGAV++ + FQ + P G P L GIT Sbjct: 44 VVVDLETTGGTPADCAITEIGAVKVRG-GQVLGEFQTLVDPGG-PVPPYIQVLTGITTSM 101 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P ++ F +F +A +AHNA FDVGF+ A R P +R++DT+ + Sbjct: 102 LVGAPRIETVLPSFLEFAG--DAVLVAHNAPFDVGFLKAAAARTGH-PWPGNRVLDTVRL 158 Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR + + + L++L + T++ H AL D+ DV ++ Sbjct: 159 ARRAVTRDEAPNHKLSTLAALFHATVT--PNHRALSDARATVDVLHALL 205 >gi|41408028|ref|NP_960864.1| hypothetical protein MAP1930 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396383|gb|AAS04247.1| hypothetical protein MAP_1930 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 643 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 34/226 (15%) Query: 10 IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTG S + D I EIGAV++ F + P R P+ ++L Sbjct: 41 VVVDLETTGGRSTSTEETAPDAITEIGAVKVRGGVVLGE-FATLVDPQ-RSIPPQIMRLT 98 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + D P+ ++ F +F ++ A +AHNA FDVGF+ A Q+ + P R Sbjct: 99 GITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRP-R 157 Query: 123 IIDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-- 175 ++ T+ +ARR + PS R L SL + + +T + H AL D+ DV ++ Sbjct: 158 VLCTVRLARRVLSREEAPSVR--LASLARLFAVTT--QPTHRALDDARATVDVLHALIER 213 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 VG N G T + + + +P+++ +R K R+ E L Sbjct: 214 VG----NQGVHT-----YADLRGYLPDVTPTQRRK----RVLAEGL 246 >gi|107022085|ref|YP_620412.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116689029|ref|YP_834652.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3] gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia MC0-3] Length = 375 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 91/166 (54%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + RI EIG VE+ + T L G+ P +L GI+D Sbjct: 16 VFVDLETTGGSLADHRITEIGVVEIGPLGVSTWTS---LVNPGQAIPPFIQQLTGISDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D P+F+S+ ++ + + ++AHNA FD GF+ AE +R +P ++ T+ + Sbjct: 73 VRDAPTFASLAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGLA-FNPD-VLCTVRL 128 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+G+ + ++H AL D+ LL + ++ Sbjct: 129 SRALFPRESRHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172 >gi|37677155|ref|NP_937551.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016] gi|320159243|ref|YP_004191621.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O] gi|37201700|dbj|BAC97521.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016] gi|319934555|gb|ADV89418.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O] Length = 204 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 13/170 (7%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+L++ + TFQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPNLGDRAIEIGAVKLVN-GEVVETFQQLMNP-GFRVSSFIESYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ PS + + F +F +N IAHNA FD F++AEL+RIN D +L Sbjct: 66 MLRSAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCDY--SGEFACSLL 121 Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +ARR PS + L L RY + H AL D+ + + +++ M+ Sbjct: 122 VARRLIQDAPSHK--LGELV-RYKNIDNDGVFHRALADAQMTAKLWLLMV 168 >gi|238062933|ref|ZP_04607642.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149] gi|237884744|gb|EEP73572.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149] Length = 286 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 9/155 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL S +DRI+EI V ++ + + + P GR P+ +H IT E Sbjct: 38 VVVDVETTGLSSTSDRIVEIALVR-IEGGRVVDEWATLVDP-GRD--PDPTFVHHITAEM 93 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P+F+ + E + A +AHNA+F+ GFI E R+ P + TL + Sbjct: 94 LSGAPTFADVAGEILSRLD--GAVVVAHNARFEEGFIAQEFARVGIS-TAPLPAVCTLRL 150 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 AR+ + L S C YGI + H AL D+ Sbjct: 151 ARQVLAAPNFQLVSCCTVYGIEL--HDAHTALGDT 183 >gi|291166154|gb|EFE28200.1| DNA polymerase III, alpha subunit, Gram-positive type [Filifactor alocis ATCC 35896] Length = 1407 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG S ND IIEIGAV++ + +R F F+ P R+ +L IT+E Sbjct: 391 VVFDIETTGFSSINDAIIEIGAVKIKNREIIDR-FSEFVNPK-REIPYHITELTSITNEM 448 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++ + + F +F +++ ++AHN+ FD FI +R+ D L IDT+ + Sbjct: 449 VCNEDTIEEVLPRFMEF--SKDSVFVAHNSDFDTSFIKENCKRL--DLLYDRIAIDTVEL 504 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R R+ LN + K+ GI++ + H A+ D+ + +++K + Sbjct: 505 SRALLTDLKRHKLNVVAKKLGISLENH--HRAVDDAEATAQIFLKFL 549 >gi|295397429|ref|ZP_06807516.1| DNA polymerase III [Aerococcus viridans ATCC 11563] gi|294974330|gb|EFG50070.1| DNA polymerase III [Aerococcus viridans ATCC 11563] Length = 314 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 8/173 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ DIETTGL ND I+E+ A+ + D+ + +RTF + PN R S L GI++ Sbjct: 26 VMIDIETTGLKPSNDEILELSAIRIRDH-QMDRTFSTLVQPN-RPISGFITNLTGISNHM 83 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P EF DF E + +N FD+ FI + P+ + +D L+I Sbjct: 84 VMTAPPIEQAIPEFLDFIQED--IILGYNVNFDLSFIYDTAVNLYNFPVR-NDYLDVLTI 140 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 AR+ + N L ++ + YG IS+ H L D ++ +VY ++ Q+ Sbjct: 141 ARKLVTETPNHKLGTMAQFYG--ISYEGAHRGLTDCYITVEVYNQLFNQAKQV 191 >gi|163732758|ref|ZP_02140203.1| exonuclease, putative [Roseobacter litoralis Och 149] gi|161394118|gb|EDQ18442.1| exonuclease, putative [Roseobacter litoralis Och 149] Length = 465 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 7/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61 R + +VFD ETTGLD D ++++GAV +++ F + P GR P + Sbjct: 267 RLRDLTFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNP-GRTIPPGSTA 325 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H I D + D P F F F ++A +AHNA FD+ F+ + + N+D + Sbjct: 326 VHQINDAMVADAPGFDVACRAFHQF--AEHAVIVAHNAPFDMAFLRRQCR--NQDYAFDN 381 Query: 122 RIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ + A S+ + L++LC R + I +H L D+ + + ++ Sbjct: 382 PVLDTVHLSAVVFGGSAEHTLDALCNRLNVHIPDDVRHTGLGDALATAKALVALI 436 >gi|127512799|ref|YP_001093996.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] gi|126638094|gb|ABO23737.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] Length = 204 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 78/156 (50%), Gaps = 11/156 (7%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L +R FQ + P G S GIT+ Sbjct: 7 VVLDFETTGLSPLQGDRAIEIGAVKLQQGVVVDR-FQQLMNP-GFAVSSFIADYTGITNA 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D PS ++ ++F DF Q +AHNA FD F+ AE RI+ + P +L Sbjct: 65 MLSDAPSCETVMADFADFI--QGCHLVAHNASFDQKFLTAEFARIDLEQSQPFAC--SLL 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGIT---ISHRSKHGA 160 +ARR + N L +L GI + HR+ + A Sbjct: 121 LARRLFQAVPNHQLGTLVNYLGIANDGVFHRALNDA 156 >gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM 43833] gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM 43833] Length = 574 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 74/166 (44%), Gaps = 14/166 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG D I EIGAV++ + F + P GR P L GITD Sbjct: 21 VVFDLETTGGSPAEDAITEIGAVKVCG-GQVRGEFATLIDP-GRPIPPFISVLTGITDAM 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + P + F +F + A +AHNA FD+GF+ A P +P ++DT Sbjct: 79 VVAAPKLPQVLPAFLEFI--RGATLVAHNAPFDLGFLRAACAEYGYPPPANP--VVDTAD 134 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSK----HGALLDSHLLSDV 170 +ARR D CK + RS H AL D+ DV Sbjct: 135 LARRML---TRDETPDCKLATLARYFRSATEPCHRALADARATVDV 177 >gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM 574] gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM 574] Length = 1421 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 10/175 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 +V D ETTG + D IIEIGAV+ ++ + +R F + P+ K P E KL GIT + Sbjct: 410 VVLDFETTGFSPQTDEIIEIGAVKFINGMEVDR-FGTLVKPD--KEIPFEVSKLTGITLD 466 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + +F +A +AHNA FD+ F+ ++ + + ++++DTL Sbjct: 467 MVKDAPDARQALAALREFIG--DAVLVAHNAAFDLSFLKVGFRKYLQVEVT-NQVVDTLG 523 Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQ 180 AR P +N L++L K + I ++ HR+ A L + K + G+Q Sbjct: 524 TARVLLPHLKNHKLDTLVKEFKIELANHHRAVDDAAATGKLWQVLLTKAVEQGAQ 578 >gi|309791196|ref|ZP_07685728.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] gi|308226758|gb|EFO80454.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] Length = 272 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 26/203 (12%) Query: 10 IVFDIETTGLDSK-NDRIIEIG-------AVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + FD+ETTGLD + R+ E+ AVE DY + L P+ R PEA Sbjct: 15 VFFDLETTGLDLRAGHRVCELALLRVRGAAVE--DYLGSA------LRPD-RLLDPEAAA 65 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 ++G D L+ P F+S+ A IAHN FD+ F+NAEL RI + PL S Sbjct: 66 VNGFQDAELRGAPRFASVAGRVQRM--AHGAVLIAHNLPFDMAFLNAELARIGQPPLA-S 122 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +DTL +ARR L +L + +G+ R H AL D L V+ ++ + +++ Sbjct: 123 VTLDTLVLARRLLRRPSYSLAALAEHFGLP---RPTHRALADVLALRGVFAQLQLAMAEL 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNIS 204 G T +D + E+ P ++ Sbjct: 180 --GVTTLQD-VLRLERGLAPGVA 199 >gi|307243534|ref|ZP_07525682.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus stomatis DSM 17678] gi|306493090|gb|EFM65095.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus stomatis DSM 17678] Length = 1202 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 11/171 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGIT 66 R +VFDIETTG D I EIGAV L D +R F F+ P + + P E +L IT Sbjct: 186 RFVVFDIETTGFSVTGDNITEIGAVLLEDGQIKDR-FSTFVNP--KMDIPYEVQELTNIT 242 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++D P ++F DF +++ +AHNA FD GFI + + D +DT Sbjct: 243 NDMVEDAPGIEEALNKFMDF--AKDSILVAHNAYFDTGFIAQKCSEVGLDY--KHEKLDT 298 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 L +AR P R L+ L K I +S H A+ D+ + ++++ + Sbjct: 299 LLLARVLMPHMKRFGLDRLTKALSINLS--GHHRAVNDAEATAQLFLRFIA 347 >gi|302389800|ref|YP_003825621.1| DNA polymerase III catalytic subunit, PolC type [Thermosediminibacter oceani DSM 16646] gi|302200428|gb|ADL07998.1| DNA polymerase III catalytic subunit, PolC type [Thermosediminibacter oceani DSM 16646] Length = 1415 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 7/151 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTGL D IIEIGAV++ +R F F+ P GR S L GI + Sbjct: 405 VVTDIETTGLSLDADEIIEIGAVKVYRGQIIDR-FHSFVNP-GRPISSHITNLTGINNAM 462 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + S+F F N ++AHNA+FD GFI + ++ D ++++DTL++ Sbjct: 463 VSQAPPVKDVMSDFLRFIG--NGIFVAHNAEFDAGFIRRDCKKFGMK-FD-NKVMDTLNL 518 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHG 159 + P +N L+++ K++ I + + G Sbjct: 519 SALVFPELKNHRLDTIAKKFNINMGSHHRAG 549 >gi|23099217|ref|NP_692683.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Oceanobacillus iheyensis HTE831] gi|22777446|dbj|BAC13718.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831] Length = 939 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 95/174 (54%), Gaps = 17/174 (9%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTG SKND+IIEIG V +++ + T F P G+ P L GI+ Sbjct: 3 RFVVIDLETTGHAPSKNDKIIEIGMV-IIEGDEIIDTKTTFFNP-GQPIPPFITNLTGIS 60 Query: 67 DEFLKDKPSFS----SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 D+ + D P F+ SI S D + IAHN FD+GF+NAEL+ D L ++ Sbjct: 61 DDDVADAPLFTEKALSIKSILEDSY------IIAHNVNFDLGFLNAELKENGIDRLH-NQ 113 Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++R P++ L+ L + + H H AL D+++ + ++ K+M Sbjct: 114 VLDTVELSRILFPTAPGYKLSQLSDHFN--LQHDDPHRALSDAYVTAKLFQKLM 165 >gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae] gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae] Length = 1459 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 6/168 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FDIETTGL K IIE GAV++ K + Q F+ P + + +L GIT + Sbjct: 426 VSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKVTQFFIKPQAKIGA-FTTELTGITQQM 484 Query: 70 LKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + S +D + + A IAHNAKFD F+ + R+N P +IDTL Sbjct: 485 LDSEGLSIKDGLQRIYDCLDGKVA--IAHNAKFDFNFLKEQF-RLNNVPFPNVTVIDTLI 541 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R P+ R+ L + R G+ H D+ +L++V++ ++ Sbjct: 542 ASRIGFPNYKRHKLEDVASRLGVVYDPNVAHRGDYDAKVLANVWVNII 589 >gi|195542024|gb|ACF98221.1| putative DNA polymerase III epsilon subunit [uncultured bacterium 1114] Length = 312 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 17/177 (9%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63 +++ D ETTGLD DRI+ IGAV L +RTF+ + P G A +H Sbjct: 24 SELPVTALDTETTGLDPGRDRIVAIGAVRLHGRRLYPSRTFETLVRP-GISIPASASAIH 82 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDP--L 118 GI D + P + I+ + + + H+ FD+ I A +R +P L Sbjct: 83 GIGDAMVAGAPGMAEIWPRLSPWLAGRVV--LGHHVDFDLAMIGAAARRHGFSWTEPFAL 140 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D +R++ L SS DL+ +R+G+T+ R H AL DS + + VY++++ Sbjct: 141 DTARLVAALD------GSSPVDLDEAAQRHGVTLEGR--HSALGDSLIAARVYLRLV 189 >gi|256544693|ref|ZP_05472065.1| Gram-positive family DNA polymerase III, alpha subunit [Anaerococcus vaginalis ATCC 51170] gi|256399582|gb|EEU13187.1| Gram-positive family DNA polymerase III, alpha subunit [Anaerococcus vaginalis ATCC 51170] Length = 1398 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 17/172 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPE-ALKLHGI 65 R IVFD+ETTGL D+I EIGAV++ + +VF N K P+ ++L GI Sbjct: 383 RFIVFDLETTGLSKYIDKITEIGAVKI----ENGEIIEVFNELVNPEKMIPQKVVELTGI 438 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLDPSRI 123 T+E + DKP + +F +F +++ ++ N FD+GFI ++ +P+ Sbjct: 439 TNEMVMDKPKIDEVLPKFLEF--SKDSYFVGQNTDFDIGFIKEACDNLSYKFEPI----Y 492 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DTL +AR P+ R L+ L K+ G + + H A D+ + ++IK+ Sbjct: 493 LDTLPMARAVFPTMGRFSLDKLAKKLG--VGPFNHHRASDDAMTTAKIFIKL 542 >gi|185178976|ref|ZP_02964733.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|225551037|ref|ZP_03771983.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209258|gb|EDU06301.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|225378852|gb|EEH01217.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 1442 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 7/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL D IIE GA+ + + + Q F+ P N L I E Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNINQEM 468 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127 + D + + + F+ N +AHN FD+ FIN L + PL +PS IDTL Sbjct: 469 VNDAIDEKTALLKIKEIFD--NHILVAHNGISFDINFINQRLLKWGLKPLKNPS--IDTL 524 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I+R +P + L ++CK+Y + + H A D+ +L+DV+ Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVF 568 >gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] Length = 375 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 18/163 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 16 VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIID 125 ++D PSF+ + ++ + + ++AHNA FD GF+ AE +R N D ++ Sbjct: 73 VRDAPSFAELAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLC 124 Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 T+ ++R P SR+ L++L R+G+ + ++H AL D+ LL Sbjct: 125 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLL 165 >gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] Length = 375 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 18/163 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 16 VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIID 125 ++D PSF+ + ++ + + ++AHNA FD GF+ AE +R N D ++ Sbjct: 73 VRDAPSFAELAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLC 124 Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 T+ ++R P SR+ L++L R+G+ + ++H AL D+ LL Sbjct: 125 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLL 165 >gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 375 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 18/163 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 16 VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIID 125 ++D PSF+ + ++ + + ++AHNA FD GF+ AE +R N D ++ Sbjct: 73 VRDAPSFAELAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLC 124 Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 T+ ++R P SR+ L++L R+G+ + ++H AL D+ LL Sbjct: 125 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLL 165 >gi|154246367|ref|YP_001417325.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] gi|154160452|gb|ABS67668.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] Length = 719 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 20/173 (11%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEA-LKLHGITD 67 VFD ETTGLD + D I++IGA +++ + F + P +++ PEA + +HGI Sbjct: 531 VFDTETTGLDPAGGDEILQIGATRIVNGRLLASECFDQLVDP--QRSIPEAGIAVHGIRP 588 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI----NAELQRINKDPLDPSRI 123 E ++ KP+ + F F + + HN FD+ F+ NA R ++ + Sbjct: 589 EMVRGKPTLPQVLPAFHAF--AADTVLVGHNVAFDMRFLTLKENASGVRFDQP------V 640 Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DTL +A HP + L ++ R GI +S R H AL D+ +++++K++ Sbjct: 641 LDTLLLAAIVHPGEDSHGLEAMAARLGIAVSGR--HTALGDALATAEIFLKLL 691 >gi|302392350|ref|YP_003828170.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium arabaticum DSM 5501] gi|302204427|gb|ADL13105.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium arabaticum DSM 5501] Length = 1440 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 9/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 IVFD+ETTG + ++ IIEIGA ++ D +R F + P PE ++L GI + Sbjct: 429 IVFDLETTGFNPYHNEIIEIGAAKVKDGRIIDR-FGTLVDP--ETEIPERIVELTGIDNS 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + KP +EF DF E A +AHN FD FIN +LQ I + LD S +DTL+ Sbjct: 486 MVAGKPKKEEALNEFLDFVGE--ATIVAHNLSFDRNFINNKLQAIGESALDNSA-LDTLN 542 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 +AR LN L K + ++ + H A+ D+ + + Sbjct: 543 LARALLDLKSFKLNRLAKEFDKSLDNH--HRAVDDAEVTA 580 >gi|251779220|ref|ZP_04822140.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083535|gb|EES49425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1452 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL-KLHGITD 67 +VFD+ETTG ND+IIEIGAV++ K+ F C N +++ P + +L I + Sbjct: 440 VVFDLETTGFSPINDKIIEIGAVKI----KSGEIIDKFSCFVNPKRDIPYKITQLTSIDN 495 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +KD +I +F +F + +AHNA FD GFI + +N + P I+DT+ Sbjct: 496 NMVKDADVIENILPKFMEFC--EGTVVVAHNAAFDTGFIKKNCRDLNINFDLP--ILDTV 551 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++ R +P + LN + K GI++ + H A+ D+ +D+ +K Sbjct: 552 TLCRFLYPELKKVKLNIVAKFLGISLENH--HRAVDDAKATADILLK 596 >gi|28900648|ref|NP_800303.1| hypothetical protein VPA0793 [Vibrio parahaemolyticus RIMD 2210633] gi|153836411|ref|ZP_01989078.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810] gi|28809028|dbj|BAC62136.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750313|gb|EDM61058.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810] Length = 214 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 13/172 (7%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L+D + +FQ + P G + S GIT+ Sbjct: 18 VVLDFETTGLSPTLGDRAIEIGAVKLVDGEVVD-SFQQLMNP-GFRVSSFIENYTGITNN 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ PS + + F +F + +N IAHNA FD F++AEL+RIN +L Sbjct: 76 MLRTAPSCEEVMASFSEFIDGEN--LIAHNASFDKRFLDAELERINCGY--SGEFACSLL 131 Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +ARR PS + L L RY + H AL D+ + + +++ M+ G Sbjct: 132 VARRLIQDAPSHK--LGELV-RYKNIDNDGVFHRALADAQMTAKLWLLMVEG 180 >gi|225076263|ref|ZP_03719462.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens NRL30031/H210] gi|224952387|gb|EEG33596.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens NRL30031/H210] Length = 463 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 13/170 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 +V D+ETTG + DRI E+ V T+ V C ++ PE +L GI DE Sbjct: 22 VVVDLETTGGNFYQDRITEVALVRFEQGRATHYEQLVNPC----RSIPEFVARLTGIHDE 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ P F+ I ++ Q A +AHN++FD F+ E RI+ D PS + T+ Sbjct: 78 TVKNAPVFADIAADLLPLL--QGAVVVAHNSRFDYTFLRHEFARIHTDFAAPS--LCTVQ 133 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++RR +P ++ L+S+ +R GI ++R H A+ D L D Y+++ + Sbjct: 134 LSRRLYPEFYKHSLDSIIERTGIQTANR--HRAMTDVAALCD-YLELSLA 180 >gi|194246813|ref|YP_002004452.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] gi|193807170|emb|CAP18609.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] Length = 1449 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 105/195 (53%), Gaps = 18/195 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD ETTGL ND+IIEI A+++ + ++ FQ + P ++ +P L I+++ Sbjct: 410 VIFDFETTGLSKINDQIIEIAAIKIQN-NQIIDEFQTLINPQ-QELTPFIENLTNISNQD 467 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINKDPLDPSRIIDTLS 128 LK++P ++I +F F +N+ IAHN FD+GF +N + +N P IDTL+ Sbjct: 468 LKNQPLIATILPKFLKFC--ENSILIAHNISFDMGFLVNQTKKHLNLKLNLP--FIDTLN 523 Query: 129 IARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR S+ +L SL K + IS + H A +SDV I + +N+ Sbjct: 524 LARYCLDSNLRYFNLKSLAKYFK--ISFENHHRA------MSDVLITKTIFQQLLNYLL- 574 Query: 187 TNEDRFFKEEKKTVP 201 T +F+++ K T+P Sbjct: 575 TKNIQFYQQLKLTLP 589 >gi|188589600|ref|YP_001920613.1| DNA polymerase III PolC [Clostridium botulinum E3 str. Alaska E43] gi|188499881|gb|ACD53017.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum E3 str. Alaska E43] Length = 1452 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL-KLHGITD 67 +VFD+ETTG ND+IIEIGAV++ K+ F C N +++ P + +L I + Sbjct: 440 VVFDLETTGFSPINDKIIEIGAVKI----KSGEIIDKFSCFVNPKRDIPYKITQLTSIDN 495 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +KD +I +F +F + +AHNA FD GFI + +N + P I+DT+ Sbjct: 496 NMVKDADVIENILPKFMEFC--EGTVVVAHNAAFDTGFIKKNCRDLNINFDLP--ILDTV 551 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++ R +P + LN + K GI++ + H A+ D+ +D+ +K Sbjct: 552 TLCRFLYPELKKVKLNIVAKFLGISLENH--HRAVDDAKATADILLK 596 >gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC 17616] gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 398 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 18/167 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 39 VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 95 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIID 125 ++D PSF+ + ++ + + ++AHNA FD GF+ AE +R N D ++ Sbjct: 96 VRDAPSFAELAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLC 147 Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 T+ ++R P SR+ L++L R+G+ + ++H AL D+ LL + Sbjct: 148 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLLWQFW 192 >gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] Length = 398 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 18/167 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG RI EIG VE+ + T+ + P G+ P +L GI+D Sbjct: 39 VFVDLETTGGTPAEHRITEIGVVEIGPLGVS--TWTTLVNP-GQPIPPFIQQLTGISDAM 95 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIID 125 ++D PSF+ + ++ + + ++AHNA FD GF+ AE +R N D ++ Sbjct: 96 VRDAPSFAELAPALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLC 147 Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 T+ ++R P SR+ L++L R+G+ + ++H AL D+ LL + Sbjct: 148 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLLWQFW 192 >gi|308273149|emb|CBX29752.1| hypothetical protein N47_F14470 [uncultured Desulfobacterium sp.] Length = 182 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 98/174 (56%), Gaps = 9/174 (5%) Query: 5 NKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N + ++FD+ETTG + ++ RIIEIG V + + + + + C G+ S +A K++ Sbjct: 13 NSDKYVIFDVETTGFNPQHGARIIEIGVVHIENGNIISEFKSLINC--GKAVSKQAQKVN 70 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT+E L +P+ +F +F F ++ + +AHNA FD+ F+ EL R+ + + Sbjct: 71 GITNEMLSGEPTPEEVFPDFLKFISK--STLVAHNAVFDISFLRYELSRLGF--VLSNDY 126 Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITIS-HRSKHGALLDSHLLSDVYIKMM 175 + TL+I+R+ P N L ++ K + + + H AL D+ L + ++++MM Sbjct: 127 LCTLNISRKIFPDLENHKLLTVAKHILVNLPKNLHLHRALDDARLTAMIWMEMM 180 >gi|110678446|ref|YP_681453.1| exonuclease, putative [Roseobacter denitrificans OCh 114] gi|109454562|gb|ABG30767.1| exonuclease, putative [Roseobacter denitrificans OCh 114] Length = 465 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 7/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61 R + +VFD ETTGLD D ++++GAV +++ F + P GR P + Sbjct: 267 RLRDLTFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNP-GRTIPPGSTA 325 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H I+D + D P F F F ++A +AHNA FD+ F+ + + ++D + Sbjct: 326 VHQISDAMVADAPGFDVACRAFHQF--AEHAVIVAHNAPFDMAFLRRQCR--DQDYAFDN 381 Query: 122 RIIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+DT+ + A S+ + L++LC R + I +H L D+ + + ++ Sbjct: 382 PILDTVHLSAVVFGGSAEHTLDALCDRLNVHIPDDVRHTGLGDALATAKALVALI 436 >gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [marine bacterium HP15] Length = 486 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 9/153 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIETTG +S DRI EIG + + +Q L P R SP GI++E + Sbjct: 16 LDIETTGGNSARDRITEIG-IRFWRAGEVVGEWQTLLNPETRI-SPFIENFTGISNEMVA 73 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 D P F + E + ++AHNA+FD GFI +E +R+ + L ++++ T+ ++R Sbjct: 74 DAPLFEEVADELEAQL--KGKVFVAHNARFDYGFIKSEFRRLGR--LFSAKVLCTVKLSR 129 Query: 132 RKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163 R +P R+++++L R+G+ R H A+ D Sbjct: 130 RLYPEFRRHNMDALIARHGLARVQR--HRAMGD 160 >gi|146297347|ref|YP_001181118.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410923|gb|ABP67927.1| DNA polymerase III catalytic subunit, PolC type [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 1402 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTG D++ DRIIEIGAV++ + +R F F+ P G K +L GI Sbjct: 391 VVVDIETTGFDNQKDRIIEIGAVKIENGEIVDR-FSTFVDPEG-KIPIRISELTGIYQNM 448 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P S EF F + A +AHNA+FD+GF+ Q + IDTL + Sbjct: 449 VDNAPKLSDAILEFEKFCS--GAILVAHNAQFDIGFLKRSYQECGL--IFDYTYIDTLEL 504 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +RR S + LN + + I + H H A D+ + ++I ++ Sbjct: 505 SRRVLTDLSSHKLNKVAEFLNIELKHH--HRADSDAETTAKIFISLI 549 >gi|268610447|ref|ZP_06144174.1| DNA polymerase III, alpha subunit [Ruminococcus flavefaciens FD-1] Length = 1441 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 11/180 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 IVFD+ETTGL+ + DR+ EIGAV+L + + +F + P K PE + +L GI+D Sbjct: 426 IVFDVETTGLNFRTDRLTEIGAVKLKNLQVVD-SFNTKVNP--EKPIPEKITELTGISDA 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + F +F ++ IAHNA++D IN +R N D D + +DTL Sbjct: 483 DVKDAPHEAEALRMFMEFCGDKPV-LIAHNARYDTNMINQVCKRQNID-FDYTW-VDTLV 539 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + P R+ LN + K+ + + H A D+ +L+ +YI+ + G + + GFK+ Sbjct: 540 MCQSMLPEMGRHKLNLVAKQ--LKLGKFDHHRASDDALMLAKIYIE-LAGRLKNDRGFKS 596 >gi|225018411|ref|ZP_03707603.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum DSM 5476] gi|224948829|gb|EEG30038.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum DSM 5476] Length = 1453 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 13/168 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTGL+++ +R+ EIGAV +L + + F+ P + P+ +L GITD Sbjct: 435 VVFDTETTGLNAQTERLTEIGAV-VLKNGEITEEYDEFVNPE-KPIPPKITELTGITDSM 492 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPSRIIDTL 127 + D P+ F+ F + IAHNA FD+GF+ A R ++ D IDTL Sbjct: 493 VADAPTEKEALERFFAF--AKGRILIAHNANFDMGFLAAAAARHGLSCD----FTYIDTL 546 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I R P+ RN L+++ K + + + H A D+ +L V+ ++ Sbjct: 547 PIVRTLFPTLRNHKLDTVVKH--LKLGDFNHHRACDDAKILGLVFAEV 592 >gi|260365523|ref|ZP_05778060.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030] gi|260877586|ref|ZP_05889941.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|260895401|ref|ZP_05903897.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|260901674|ref|ZP_05910069.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|308085274|gb|EFO34969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|308090931|gb|EFO40626.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|308108950|gb|EFO46490.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|308114429|gb|EFO51969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030] Length = 204 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 13/172 (7%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L+D + +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPTLGDRAIEIGAVKLVDGEVVD-SFQQLMNP-GFRVSSFIENYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ PS + + F +F + +N IAHNA FD F++AEL+RIN +L Sbjct: 66 MLRTAPSCEEVMASFSEFIDGEN--LIAHNASFDKRFLDAELERINCGY--SGEFACSLL 121 Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +ARR PS + L L RY + H AL D+ + + +++ M+ G Sbjct: 122 VARRLIQDAPSHK--LGELV-RYKNIDNDGVFHRALADAQMTAKLWLLMVEG 170 >gi|82703123|ref|YP_412689.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] gi|82411188|gb|ABB75297.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] Length = 463 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTG +DRIIEI + + ++ R ++ + P G P L GI++ Sbjct: 7 VILDLETTGGTPLHDRIIEIALIRFEEGMESER-WETLVNP-GISIPPFITHLTGISNGM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD PSF I + F + A AHN +FD GF+ E +R+ L R++ T + Sbjct: 65 VKDAPSFGDIAHRLYGFLD--GAVLAAHNVRFDYGFLKNEYRRMGA--LLQHRVLCTARL 120 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R+ +P + + L+++ +R+G+ R H A+ D L++ Y++M Sbjct: 121 SRKLYPQHKGHGLDAIMQRHGLKTEMR--HRAMGDVELVA-AYLEM 163 >gi|291301852|ref|YP_003513130.1| DNA polymerase III subunit epsilon [Stackebrandtia nassauensis DSM 44728] gi|290571072|gb|ADD44037.1| DNA polymerase III, epsilon subunit [Stackebrandtia nassauensis DSM 44728] Length = 578 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 14/171 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG+ S I EIGAV++ + + + P G L GITD Sbjct: 27 MVVDLETTGVASDACSITEIGAVKVRG-GEVLGEYATLVNP-GEAIDARISALTGITDAM 84 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F +F + A W+AHNA FDVGF+ + + P +++DT+ + Sbjct: 85 VADAPAIEEVLPSFLEF--ARGAVWVAHNAPFDVGFLRSACAQAEL-PWPRPQVVDTVVL 141 Query: 130 ARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR + P+ R L++L + +G + + H AL D+ DV ++ Sbjct: 142 ARRLVDRSEVPNKR--LSTLARYFGARV--KPSHRALDDARATVDVLHALL 188 >gi|239617281|ref|YP_002940603.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1] gi|239506112|gb|ACR79599.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1] Length = 1430 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 95/167 (56%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGLD D IIEIGAV+ L ++ F F+ P R S + ++ GI+D Sbjct: 420 VVFDLETTGLDPSADEIIEIGAVK-LKGTEVIGEFSSFVKPE-RNLSEKVTRITGISDRE 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTLS 128 L+D PS S + +F +F +++ +AHNA FD F+ NA Q N+D P IDTL+ Sbjct: 478 LEDAPSLSEVLPKFLEFC--KDSVLVAHNATFDYRFVRNAVKQLYNEDWKLP--YIDTLA 533 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++ S L+++ KR + + H A D+ + ++V+ K++ Sbjct: 534 LSKSLLKSKSYSLDNVVKR--LKLGDFEHHRASEDARITAEVFKKLL 578 >gi|326407708|gb|ADZ64779.1| DNA polymerase III subunit alpha, Gram-positive type [Lactococcus lactis subsp. lactis CV56] Length = 1638 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G + S +L GITD+ Sbjct: 597 VVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDDH 654 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + ++F F + +AHNA FDVGF+N R N P+ ++DTL Sbjct: 655 VKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSR-NGLPIITQPVVDTLEF 711 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 AR +P R L L K++ I + + H A D+ Sbjct: 712 ARNLYPEMKRFGLGQLTKKFQIGLEYH--HMANFDA 745 >gi|119387836|ref|YP_918870.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] gi|119378411|gb|ABL73174.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] Length = 706 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 96/177 (54%), Gaps = 16/177 (9%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALK 61 ++ VFD ETTGL+ ++ D II+IGA+ +L+ K R F + P GR+ PE++ Sbjct: 512 ERLSYTVFDTETTGLNPAQGDEIIQIGALRILN-GKLLRGERFDQLVDP-GREIPPESIP 569 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HGI E ++ +P + + F + + + + HN FD+ F+ +L+ Sbjct: 570 YHGIHPEMVQGQPRIAEVLPAFHAYAS--DTVLVGHNVAFDMRFL--QLKEAATGLRFDQ 625 Query: 122 RIIDTL---SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL SIA+ PS + L ++ R G+ I+ R H AL D+ + ++V+++++ Sbjct: 626 PVLDTLLLASIAQPHEPS--HSLEAIAARLGVEITQR--HNALSDALVTAEVFLRLL 678 >gi|47458892|ref|YP_015754.1| DNA polymerase III PolC [Mycoplasma mobile 163K] gi|47458220|gb|AAT27543.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K] Length = 1433 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 10/175 (5%) Query: 2 IRKNKMRK----IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 ++KN + K +VFD+ETTGL D IIE GA ++L+ K T Q F+ PN ++ S Sbjct: 389 LKKNTLIKNETYVVFDLETTGLSPIFDDIIEFGAQKILN-GKVIDTLQFFVKPN-KEISE 446 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + + GI ++ +++ S + +F + +AHNA FD+ FIN ++++ N Sbjct: 447 KITLITGIKNQDVENAISEKEALKKILEFMGDHTV--VAHNATFDMNFINEKIEKYNFQE 504 Query: 118 LDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + +IIDTL +++ P ++ L +L R GI + H A D+ +L+ V+ Sbjct: 505 SNL-QIIDTLVVSKIIEPEAKKFSLENLASRSGIIYNSTEAHRADYDADVLAKVW 558 >gi|162455854|ref|YP_001618221.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce 56'] gi|161166436|emb|CAN97741.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce 56'] Length = 258 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 79/156 (50%), Gaps = 16/156 (10%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ETTG D DRIIE+G V + S T +L GR E+ +HGI D ++ Sbjct: 48 VDVETTGRDPAGDRIIELGIV--IGRSGEILTRYNWLIHPGRPIPAESTAIHGIKDADVE 105 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-------I 124 KPSF+ + E F + A A+NA FD F+ AEL+R+ P +P + Sbjct: 106 GKPSFAEVAEEILGCF--KGAIPAAYNATFDRSFLLAELERVGMRPREPPPAMRREVDWV 163 Query: 125 DTLSIARR--KHPSSRNDLNSLCKRYGITI--SHRS 156 D L+ AR K+ SR L + R GI++ +HR+ Sbjct: 164 DPLTFARELYKNEESRA-LGDMAARLGISLEKAHRA 198 >gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor hydrothermalis 108] gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor hydrothermalis 108] Length = 1402 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTG DS+ DRIIEIGAV++ + T + F F+ P G K +L GI + Sbjct: 391 VVVDIETTGFDSQRDRIIEIGAVKIENGQITEK-FSTFVDPEG-KIPVRISELTGIYQDM 448 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P S EF F + +AHNA+FD+GF+ Q + IDTL + Sbjct: 449 VDKAPKLSDAILEFEKF--ASGSVLVAHNAQFDIGFLKKAYQECG--IIFDYTYIDTLEL 504 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +RR S + LN + + + + H H A D+ + ++I ++ Sbjct: 505 SRRLLTDLSSHKLNKVAEFLNVELKHH--HRADSDAETTAGIFISLV 549 >gi|31747869|gb|AAN10194.1| DNA polymerase III epsilon subunit [Candidatus Fritschea bemisiae] Length = 249 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 26/195 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD E+TGLD + DRIIEI A++ ++ + + + P E ++H ITDE Sbjct: 10 VCFDCESTGLDPEKDRIIEIAAIK-FSFNAIIDSIEDLINPETLIPQ-ETTRIHHITDEM 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-----I 124 ++ P + + + DF E + H FD+ + AE +R PSR+ + Sbjct: 68 VQKSPKINEVIQSYLDFIGESIV--VGHGIPFDLALLEAEAKRAGV----PSRLLNQRYL 121 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 DTL +AR S N L SL K + I +HR+ +SDV + + V ++ Sbjct: 122 DTLRLARLYGESPTNSLESLRKHFNIQGINAHRA----------MSDVLVNIDV-FKYLS 170 Query: 183 FGFKTNEDRFFKEEK 197 GF T E+ F K EK Sbjct: 171 QGFNTVEELFKKLEK 185 >gi|23012539|ref|ZP_00052599.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 218 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 26/196 (13%) Query: 8 RKIVFDIETTGLDSKNDR--------------IIEIGAVELL---DYSKTNRTFQVFLCP 50 R I D ETTG +IEIG +EL+ + KT +++Q + P Sbjct: 12 RIIAIDAETTGFQVPTPAEIRKMPKGLRLPGIVIEIGCLELVRSEEGWKTGKSWQRRIQP 71 Query: 51 NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 G S ++++HGI+ LK+ PSF I EF F + +AH+A+ ++ F+N E Sbjct: 72 GG-PVSKASVEVHGISPAELKNAPSFRDILDEFEAFIGQDVL--LAHSAENEMAFLNFEY 128 Query: 111 QRINKDPLDP-----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR-SKHGALLDS 164 R + D + T ++R+ P L+ LC R + S R HGALLD+ Sbjct: 129 ARAGRCGFDEMIFSVDDFVCTQDLSRQFFPGVPGSLDVLCDRLWVDRSDRFEHHGALLDA 188 Query: 165 HLLSDVYIKMMVGGSQ 180 L ++ ++KM G Q Sbjct: 189 ILTAEAFMKMAGGFVQ 204 >gi|89898728|ref|YP_515838.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56] gi|89332100|dbj|BAE81693.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56] Length = 249 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 5/162 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D E TGLD K DRIIE A + + + + + P+ R S E+ ++H I+D Sbjct: 10 VCLDCEMTGLDVKKDRIIEFAA-KRFTFDNVIDSMETLINPD-RVISAESQRIHRISDAM 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LKD+P S +F + F E + + H+ FD+ + E +RI + L IIDTL + Sbjct: 68 LKDQPRISEVFPKIQAFLKEGDY-IVGHSVGFDLQVLTQEAERIGETFLSKYCIIDTLRL 126 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 A+ S N L +L + + + H A+ D + +++ Sbjct: 127 AKEYGDSPNNSLEALAVHF--NVPYDGNHRAMKDVEININIF 166 >gi|110598328|ref|ZP_01386602.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM 13031] gi|110340026|gb|EAT58527.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM 13031] Length = 219 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 91/180 (50%), Gaps = 15/180 (8%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M RK +V D ETTGL + DR IEIGAV LL+ + FQ + P G + S Sbjct: 1 MQRKLAESVVVLDFETTGLSPEYGDRAIEIGAV-LLEEGEIVGRFQKLMNP-GFRISQFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+E LK +P + +EF +F +N +AHNA FD F++ EL+R + Sbjct: 59 EGYTGITNEMLKGQPCCEEVMAEFSEFIAGRNI--VAHNAAFDRRFLDFELKRAKRAY-- 114 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMM 175 +L ++RR + S N L +L GI + HR AL D+ + + +++ M+ Sbjct: 115 EGSCCCSLLVSRRIYQDSPNHRLQTLVSHAGIRQTGVFHR----ALADAEMTAQLWLSMI 170 >gi|90415683|ref|ZP_01223617.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] gi|90333006|gb|EAS48176.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] Length = 528 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 17/171 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++ D+ETTG + + RIIEIG + +++ K +Q F+ P P KL GI Sbjct: 23 KMVLLDLETTGGKATHHRIIEIGLL-VIEQGKVLERWQSFVDPETVL-PPFIQKLTGIAP 80 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPSRI 123 L+ P FS + + N++ +AHNA+FD GF+ E QRI N PL Sbjct: 81 SMLRGAPLFSEVAETLLTYLNDRT--LVAHNARFDYGFLKNEFQRIGISYNAKPL----- 133 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++ +R +P R+ L+ + KR+ + I +R H AL D+ ++ ++K Sbjct: 134 -CSVKFSRSLYPQFKRHGLDQIIKRFQLPIENR--HRALDDAEMIQRFFLK 181 >gi|46198514|ref|YP_004181.1| hypothetical protein TTC0206 [Thermus thermophilus HB27] gi|55980543|ref|YP_143840.1| DNA polymerase III subunit epsilon [Thermus thermophilus HB8] gi|46196136|gb|AAS80554.1| hypothetical conserved protein [Thermus thermophilus HB27] gi|55771956|dbj|BAD70397.1| probable DNA polymerase III epsilon subunit [Thermus thermophilus HB8] Length = 247 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 14/173 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL D +IE+G + L + FQ + P+ R SP +L GI E Sbjct: 74 VVLDLETTGLAPGLDEVIEVGLLRLEGGRRL--PFQSLVRPS-RPPSPFVERLTGIPREA 130 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L++ PS + + + +A + HNA FD+GF+ L+ + +P ++D+L + Sbjct: 131 LEEAPSLEEVLEKAYPLL--ADATLVIHNAAFDLGFLRPALEGLGYRLENP--VVDSLRL 186 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSH----LLSDVYIKMMVG 177 ARR P R L++L + + + R+ H AL D ++ +VY + G Sbjct: 187 ARRGLPGLRRYGLDALSEV--LELPRRTCHRALEDVERTLAVVHEVYYMLTSG 237 >gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B] gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum B str. Eklund 17B] Length = 1452 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEAL-KLHGITD 67 +VFD+ETTG ND+IIEIGAV++ K+ F C N +++ P + +L I + Sbjct: 440 VVFDLETTGFSPVNDKIIEIGAVKI----KSGEIIDEFSCFVNPQRDIPYKITQLTSIDN 495 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +KD +I +F +F ++ +AHNA FD GFI + +N P I+DT+ Sbjct: 496 NMVKDADVIENILPKFMEFC--EDTVIVAHNAAFDTGFIKKNCRDLNIRFDIP--ILDTV 551 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++ R +P + LN + K GI++ + H A+ D+ +D+ +K Sbjct: 552 TLCRFLYPELKKVKLNIVAKFLGISLENH--HRAVDDAKATADILLK 596 >gi|291545334|emb|CBL18442.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp. SR1/5] Length = 1129 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 19/172 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66 +VFDIETTG + RIIEIGAV++ T+R F F+ P P ++ +T Sbjct: 103 VVFDIETTGFSALTCRIIEIGAVKVEKGQITDR-FSTFVNP----EVPIPFRIEQLTSIN 157 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124 D + D P + +F +F + +AHNA FD+ FI N + Q I+ D + Sbjct: 158 DSMVLDAPVIEEVLPKFLEFC--EGCVMVAHNADFDMSFIIENCKRQGISDD----FTYV 211 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+ +AR P+ +R L+++ K G+++ H H A+ D+ ++++++ + Sbjct: 212 DTVGMARFLLPALNRFKLDTVAKAVGVSLDHH--HRAVDDAACTAEIFVRFV 261 >gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174] gi|149832830|gb|EDM87913.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174] Length = 1439 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 92/170 (54%), Gaps = 15/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTG +IIEIGAV + + T+R F F+ P + P + +L I D Sbjct: 414 VVFDIETTGFSPLTCQIIEIGAVRVENGVITDR-FSTFVNP--KVPIPYRIEQLTSINDS 470 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDT 126 + D P +I +F +F A +AHNA FD+ FI N + Q + ++ +DT Sbjct: 471 MVMDAPDIQTILPQFLEFC--AGAVMVAHNADFDMSFIIENCKRQGLPQE----YTYVDT 524 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +AR P+ +R L+++ K G+++ H H A+ D+ ++++++ + Sbjct: 525 VGMARFLLPALNRFKLDTVAKAVGVSLDHH--HRAVDDAACTAEIFVRFV 572 >gi|89902537|ref|YP_525008.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118] gi|89347274|gb|ABD71477.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118] Length = 722 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 94/168 (55%), Gaps = 10/168 (5%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL+ ++ D II+IGA +++ + +F+ + P+ R S ++++HGIT + Sbjct: 534 VFDTETTGLNPAEGDEIIQIGAARIVNKKILRQESFEQLVNPD-RLISAASVQIHGITQD 592 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P + F F Q+ +AHNA FD+ F+ + P ++DTL Sbjct: 593 RVIGQPRIGEVLPAFHAF--AQDTVLVAHNAAFDMKFLQLKEAATGLAFHQP--VLDTLL 648 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ HP+ + L ++ +R+ IT+ R H AL D+ + ++V+++++ Sbjct: 649 LSAVVHPNQESHRLEAIAERFNITVLGR--HTALGDAMVTAEVWLRLI 694 >gi|332525056|ref|ZP_08401237.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] gi|332108346|gb|EGJ09570.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] Length = 645 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 12/169 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPE-ALKLHGITD 67 VFD ETTGL+ S D II+IGA ++ + + +F+ + P + PE + +HGIT Sbjct: 457 VFDTETTGLEPSAGDEIIQIGATRIVAGKLRRHESFEQLVDPQ--RAIPERTVAIHGITP 514 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +P+ + F + + +AHNA FD+ F+ + +R D ++DTL Sbjct: 515 AMVAGQPTIREVLPALHAFAH--DTVLVAHNAAFDLRFLELK-ERAAGVRFDMP-VLDTL 570 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++ HP+ R+ L ++ +R G+ + R H AL D+ + ++V++KM+ Sbjct: 571 LLSQVLHPNQERHSLEAIAERLGVPVLGR--HTALGDAIVTAEVFLKMI 617 >gi|134098272|ref|YP_001103933.1| hypothetical protein SACE_1689 [Saccharopolyspora erythraea NRRL 2338] gi|133910895|emb|CAM01008.1| DNA polymerase III, epsilon subunit [Saccharopolyspora erythraea NRRL 2338] Length = 572 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 21/211 (9%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N++ +V D+ETTG + D + EIGAV++ FQ + P R P + + G Sbjct: 21 NEVTFVVVDLETTGGSNAQDAVTEIGAVKVRGGEVVGE-FQTLVDPE-RDIPPSVVTITG 78 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+ ++D P S+ F +F + + +AHNA FD GF+ A +R+ P +++ Sbjct: 79 ITEAMVRDAPRLDSVLPAFLEFC--RGSVLVAHNAPFDTGFLRAGCERLGLRWPKP-KVV 135 Query: 125 DTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 T+ +ARR + P+ R L +L G H AL D+ DV ++ Sbjct: 136 CTVRLARRVLTRDETPNYR--LGTLAGVLGARTE--PVHRALDDARATVDVLHALLERLG 191 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 I G +T ED +P+++ L+R K Sbjct: 192 PI--GVRTLEDLLGH-----LPDVTPLQRRK 215 >gi|219669053|ref|YP_002459488.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium hafniense DCB-2] gi|219539313|gb|ACL21052.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium hafniense DCB-2] Length = 929 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 60/182 (32%), Positives = 90/182 (49%), Gaps = 13/182 (7%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64 K + +V DIETTG D ND IIE A+ ++ + F V + P R+ PE L+L G Sbjct: 3 KGKIVVIDIETTGFDIYNDEIIEFAAL-CIEEGEEAEAFSVLISP--RRQVPERILRLTG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ E LK S + + D F Q+A + HN +FD+GF+ L ++ L Sbjct: 60 ISPEELKQAGSLQAYRDKILDLF--QDAIIVGHNVEFDLGFLEQALTIHFENTL-----W 112 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL IAR +P+ + L L K G+T ++ H AL D+ ++ G ++ Sbjct: 113 DTLEIARILYPNMPKYKLGDLTKSLGLTPLEKA-HRALFDARAAWELLQACWEKGLTLDL 171 Query: 184 GF 185 GF Sbjct: 172 GF 173 >gi|269956916|ref|YP_003326705.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM 15894] gi|269305597|gb|ACZ31147.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica DSM 15894] Length = 547 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL + DR+IE+ + L +T + L P + + A +HGITD + Sbjct: 51 VVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWSTRLNP---QRTVGATWIHGITDADV 107 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 PSF+ + ++ A ++ HNA+FD GF+ AEL R D +P+ I T + + Sbjct: 108 AHAPSFADVAAQVAQRLT--GAVFVGHNARFDAGFVLAELTRAGWDAPEPT-IWCTQAAS 164 Query: 131 RRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 P +S L + GI+++H H AL D+ + + + + G T Sbjct: 165 HHWLPDASSRRLVDVAAAAGISLTH--AHSALGDARATAAMLTRYI--------GASTGV 214 Query: 190 DRF 192 DR Sbjct: 215 DRL 217 >gi|194015490|ref|ZP_03054106.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061] gi|194012894|gb|EDW22460.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061] Length = 240 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 17/168 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTGLD K D+IIEIGA+++ ++ + +R + GR L Sbjct: 7 VVLDLETTGLDHKKDQIIEIGAIKIRLGGRVREFEEVSRFHTMVALEEGRDLPEFITNLT 66 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT+E L+D P E +F +A +A NA FD+ F I++ ++P R Sbjct: 67 GITEEDLEDAPEEWDALDELQNFIG--DAIVVAQNAPFDLSF-------ISRGDIEPERF 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 T ++AR P L + KR GI++ H AL D +V+ Sbjct: 118 YCTRAMARFVEPELSASLKDVTKRIGISLD--GHHRALNDVEATIEVF 163 >gi|319638605|ref|ZP_07993367.1| DNA polymerase III subunit [Neisseria mucosa C102] gi|317400354|gb|EFV81013.1| DNA polymerase III subunit [Neisseria mucosa C102] Length = 463 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 +V D+ETTG + DRI E+ V T+ V C ++ PE +L GI DE Sbjct: 22 VVVDLETTGGNFYQDRITEVALVRFEQGRATHYEQLVNPC----RSIPEFVARLTGIHDE 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ P F+ I ++ Q A +AHN++FD F+ E RI+ D PS + T+ Sbjct: 78 TVKNAPVFADIAADLLPLL--QGAVVVAHNSRFDYTFLRHEFARIHTDFAAPS--LCTVQ 133 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++RR +P ++ L+S+ +R GI ++R H A+ D L D Y+++ Sbjct: 134 LSRRLYPEFYKHSLDSIIERTGIQTANR--HRAMTDVVALCD-YLEL 177 >gi|295091739|emb|CBK77846.1| DNA polymerase III, alpha chain, Gram-positive type [Clostridium cf. saccharolyticum K10] Length = 1037 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 95/172 (55%), Gaps = 19/172 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66 +VFDIETTG +RIIEIGAV++ + +R F F+ P P E KL I+ Sbjct: 198 VVFDIETTGFSPLKNRIIEIGAVKVENGKIVDR-FSTFVNP----EVPIPFEIEKLTSIS 252 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124 D + P + +F +F + +A +AHNA FD+ FI NA +Q + +P ++ Sbjct: 253 DNMVLGAPKIEEVLPKFLEFCS--DAVMVAHNASFDMSFIRHNAMIQGKSFEP----TVL 306 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+S+AR P+ +R L+++ K + IS + H A+ D+ +++++K + Sbjct: 307 DTVSMARFLLPNLNRFKLDTVAKE--LRISLENHHRAVDDAGATAEIFVKFV 356 >gi|260426760|ref|ZP_05780739.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] gi|260421252|gb|EEX14503.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] Length = 468 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 5/166 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD ETTGL D +++IGAV +L+ L G + ++H +TD + Sbjct: 278 VFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGEVLDLLVDPGIPIPASSSRVHKVTDAMV 337 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KP F F + + +AHNA FD+ F+ R+ + P I+DT+ ++ Sbjct: 338 AGKPDIGEAGRRFHRF--AKGSVIVAHNAPFDMAFLRRHRDRMGVEWDHP--ILDTVLLS 393 Query: 131 RRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +S + L++LC+R G+ I +H AL D++ + V + M+ Sbjct: 394 AVLFGASETHTLDALCQRLGVEIPQALRHTALGDANATAQVLVMML 439 >gi|302670324|ref|YP_003830284.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316] gi|302394797|gb|ADL33702.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316] Length = 1529 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTG +RIIEIGAV++ + R F F+ P + P + KL ITDE Sbjct: 499 VVFDIETTGFSPIKNRIIEIGAVKIRNGEILER-FSEFINP--QVPIPYRIEKLTSITDE 555 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ I +F +F ++A + HN FD+ FIN Q + D +D + +DTL Sbjct: 556 MVMDAPTREVIIPKFVEFC--KDAVLVGHNVAFDISFINQNCQDLGID-VDYTT-VDTLW 611 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P +++ L+++ K + + H H A+ D+ + ++ K + Sbjct: 612 LARYFFPLQAKHTLDAVAKTLNVVLDHH--HRAVDDAECTALIFNKFI 657 >gi|239827467|ref|YP_002950091.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus sp. WCH70] gi|239807760|gb|ACS24825.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. WCH70] Length = 921 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 9/180 (5%) Query: 6 KMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K R ++ D+ETTG + K DRII++G V +++ K F F P R P +L Sbjct: 2 KDRFVIIDLETTGNVPKKGDRIIQLGMV-VIENGKIVDRFSSFFNPE-RDIPPFVQQLTN 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT++ + D PSF+ ++ D Q + ++AHN FD+ F+ EL P I Sbjct: 60 ITEQMVADAPSFAEEAAKVADML--QQSYFVAHNVSFDLQFLQEELHMAGLPPFS-GPTI 116 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DT+ +AR P++ + L L K+ + I H H A D+ + + ++I ++ Q+ F Sbjct: 117 DTVELARIVFPTAESYKLGDLAKQ--LHIDHDQPHQADSDAEVTAKLFIALLNRLRQLPF 174 >gi|21673865|ref|NP_661930.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS] gi|21647000|gb|AAM72272.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS] Length = 232 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 18/185 (9%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63 +++R ++FD ET+G D DRI+ IGAV + + +F+V L +A+ +H Sbjct: 41 DELRFVIFDTETSGFDLVKDRILSIGAVSMKGSTIDIADSFEVLLRQEA-IGGKDAVSVH 99 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSR 122 GI L F D+ N +AH+A FD+ +N L QR L+ + Sbjct: 100 GILKRDLTQGMEEGEAVCRFLDYLG--NGVIVAHHADFDIAMVNRVLSQRYGIKLLNEA- 156 Query: 123 IIDTLSIARR---------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +DT S A+R H S L++LC RYGI + R H + D++L + ++ + Sbjct: 157 -LDTASFAKRLEKGPYYNLAHKSGEYRLDNLCARYGICLYDR--HTSAGDAYLTAQLFQR 213 Query: 174 MMVGG 178 ++ G Sbjct: 214 LLAVG 218 >gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2] gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2] Length = 1459 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 6/168 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FDIETTGL K IIE GAV++ K Q F+ P + + +L GIT + Sbjct: 426 VSFDIETTGLSPKFHEIIEFGAVDINQDLKVGEVTQFFIKPQAKIGA-FTTELTGITQQM 484 Query: 70 LKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + S +D + + A IAHNAKFD F+ + R+N P +IDTL Sbjct: 485 LDSEGLSIKDGLQRIYDCLDGKVA--IAHNAKFDFNFLKEQF-RLNNVPFPNVTVIDTLI 541 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R P+ R+ L + R G+ H D+ +L++V++ ++ Sbjct: 542 ASRIGFPNYKRHKLEDVTSRLGVVYDPNVAHRGDYDAKVLANVWVNII 589 >gi|153820610|ref|ZP_01973277.1| DNA polymerase III epsilon subunit [Vibrio cholerae NCTC 8457] gi|126508846|gb|EAZ71440.1| DNA polymerase III epsilon subunit [Vibrio cholerae NCTC 8457] Length = 136 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 47/65 (72%) Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 17 DFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 76 Query: 179 SQINF 183 + + F Sbjct: 77 TSLQF 81 >gi|225017584|ref|ZP_03706776.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum DSM 5476] gi|224949644|gb|EEG30853.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum DSM 5476] Length = 865 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E+TG D+ +D II+I AV + + + R+F+ L P+ EA +H +D Sbjct: 500 VVFDVESTGTDTSSDEIIQIAAVRIDETGRVLRSFEQLLHPSKPVGQSEA--VHHFSDAL 557 Query: 70 LKDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L ++ + +EF F + A + HN FD+ + +EL R+ P + DTL Sbjct: 558 LAERGGEPPQVLAEFCSFV--RGAVVVGHNVGFDLTILASELSRLGLPPAEYEEYYDTLD 615 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR +P N L +L K + +S H A+ D DV + + Sbjct: 616 LARRFYPDLPNHKLETLSKLLDTEV--KSSHDAMDDILATKDVLLHL 660 >gi|159046099|ref|YP_001534893.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] gi|157913859|gb|ABV95292.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] Length = 485 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 10/173 (5%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLH 63 ++ ++FD ETTGL + D + +I A +++ K +T F + P GR A +H Sbjct: 289 LKYVIFDTETTGLLPERGDEVCQIAACRVVN-GKMVKTEMFDTLVNP-GRPIPLSATNIH 346 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD + D P F + F F + A IAHNA FD+ F + I P + Sbjct: 347 GITDAMVADAPDFLTAGRAFHGFAD--GAVLIAHNAPFDMAFFYRKQAEIGARFDHP--V 402 Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ ++ + + ++ L++L +R +TI ++H AL D+ ++V++K++ Sbjct: 403 LDTVLLSAVIYGQTEQHSLDALAERLNVTIPEEARHTALGDALATTEVFLKLL 455 >gi|217077387|ref|YP_002335105.1| DNA polymerase III PolC [Thermosipho africanus TCF52B] gi|217037242|gb|ACJ75764.1| DNA polymerase III, alpha subunit, Gram-positive type [Thermosipho africanus TCF52B] Length = 1365 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 7/122 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG +++ D IIE GAV+ D K TF+ F+ PN N KL GIT++ L Sbjct: 350 VFDLETTGTNARFDEIIEFGAVKYKD-GKIIDTFKSFVKPNKDIND-FTQKLTGITNDML 407 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLSI 129 KD P + +F +F + +AHNA FD GFI +++ +KD + P +DTL + Sbjct: 408 KDAPGIEEVVPKFLEFI--EGTVLVAHNADFDYGFIREVYRKMYDKDLIMPY--LDTLKL 463 Query: 130 AR 131 ++ Sbjct: 464 SK 465 >gi|118580761|ref|YP_902011.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379] gi|118503471|gb|ABK99953.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379] Length = 170 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 9/167 (5%) Query: 11 VFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ET+GL + R+IE+ AV LL K + L N + P A ++HGI E Sbjct: 7 VVDVETSGLSPRGGGRVIEVAAV-LLREGKVVGELESLLRVNCSIH-PAAARVHGIGWEM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P ++ F F + +AHNA FD+GFI EL + PL +R I TL + Sbjct: 65 LRHAPEPEDVWRRFLSFVGRR--PLVAHNAPFDMGFIRHELALLGL-PLA-NRSICTLRM 120 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKM 174 ARR+ P + + L +L + +I + H AL D+ L + V++ M Sbjct: 121 ARRRFPELASHRLEALARHLLGSIPEDCRLHRALGDARLAARVWLAM 167 >gi|269219422|ref|ZP_06163276.1| exonuclease, DNA polymerase III, epsilon subunit family [Actinomyces sp. oral taxon 848 str. F0332] gi|269211118|gb|EEZ77458.1| exonuclease, DNA polymerase III, epsilon subunit family [Actinomyces sp. oral taxon 848 str. F0332] Length = 206 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 8/160 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+ETTGL DRI+EIG V L + + +Q + P A+ +HG+T Sbjct: 1 MGYAVVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSLVNP---LRGMGAVFVHGLT 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 D + D P+ + + + F+ + +AHNA FDVGF+NA R P + Sbjct: 58 DADVADAPTLADLLPQIRGLFSGR--ALVAHNATFDVGFLNASFARAGYGMHVPREATVC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 T+ +++ P R+ L + +R G+ + R H AL D+H Sbjct: 116 TMELSKIYLPPGRHGLAAAAERAGVATAKR--HRALADAH 153 >gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom phytoplasma] Length = 1492 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 9/172 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGITDE 68 +V DIETTG DRII I AV++ + K F + P K S +L I+DE Sbjct: 406 VVLDIETTGFSKTRDRIISIAAVKIQN-GKIIEYFDELINPGKDIKISNLIQRLTNISDE 464 Query: 69 FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126 L +KP I S+F DF + N +AHNA FD+ F+ + I PL P +IDT Sbjct: 465 ILLNKPHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPLLP--VIDT 522 Query: 127 LSIARRKHPSSRN--DLNSLCKRYGITI-SHRSKHGALLDSHLLSDVYIKMM 175 L++A++ L + K + I + S H AL D+ + ++++M+ Sbjct: 523 LTLAQKYFNKILKYFSLEKIVKSFKIKLDSEGQYHNALFDARATALIFLEML 574 >gi|254229191|ref|ZP_04922610.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp. Ex25] gi|262395541|ref|YP_003287394.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25] gi|151938276|gb|EDN57115.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp. Ex25] gi|262339135|gb|ACY52929.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25] Length = 204 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 13/172 (7%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L+D + +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPTLGDRAIEIGAVKLVDGEVVD-SFQRLMNP-GFRVSSFIENYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ PS + + F +F +N IAHNA FD F++AEL+RIN +L Sbjct: 66 MLRSAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCGY--SGEFACSLL 121 Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +ARR PS + L L RY + H AL D+ + + +++ M+ G Sbjct: 122 VARRLIQDAPSHK--LGELV-RYKNIDNDGVFHRALADAQMTAKLWLLMVEG 170 >gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45] gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma bovis PG45] Length = 1458 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 6/168 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FDIETTGL K IIE GAV++ K +T Q F+ P + S +L GIT + Sbjct: 425 VSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKTTQFFIKPKDKIGS-FTTELTGITQQM 483 Query: 70 LKDKPSF-SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L K + + +D + + A IAHNAKFD F+ + R+N +IDTL Sbjct: 484 LDSKGLYIKEGLEKIYDCLDGKIA--IAHNAKFDFNFLKEQF-RLNNMQFPRVTVIDTLV 540 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R P R+ L + R G+ H D+ +L++V++ ++ Sbjct: 541 ASRIGFPGYKRHKLEDVASRLGVVYDPNVAHRGDYDAKVLANVWVNII 588 >gi|313672047|ref|YP_004050158.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312938803|gb|ADR17995.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 201 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 14/172 (8%) Query: 10 IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KLHGI 65 +VFD+ETTGL+ N D+IIE+GA K F++ P P+ ++HGI Sbjct: 18 VVFDLETTGLNPDNGDQIIEMGAF------KIEEGFKLVRDPFHTMVKPDIFIPNEIHGI 71 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+ LK+ P + +F DF + + +AH A D+ F+ A ++ D +ID Sbjct: 72 TEMELKNAPDICTALYDFIDF--SRGSVLVAHKASKDIAFLRAAMREYLIDDSFDFLVID 129 Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKMM 175 T+ ++R +P + ++L+ L +++ I+I+ + K H A+ D+ + +++KM+ Sbjct: 130 TIKFSQRLYPDFKYHNLDYLIEKHHISINSKFKRHRAIYDAEATAKIFLKMI 181 >gi|271965325|ref|YP_003339521.1| DNA polymerase III subunit epsilon-like protein [Streptosporangium roseum DSM 43021] gi|270508500|gb|ACZ86778.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease-like protein [Streptosporangium roseum DSM 43021] Length = 407 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 7/144 (4%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTGL S NDR+IEIG V L + + + P GR P+ +HGIT Sbjct: 12 VIDLETTGLRPSWNDRVIEIGIVHLDLSGEVTGEWATLVNP-GRDLGPQ--HIHGITAAD 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 ++ P+F I + + + AHN FD GF++ E R+ D PLD + + T++ Sbjct: 69 IRHAPAFGEIAGAVAERLDGRVVA--AHNLPFDAGFLSHEFGRLGLDTPLDHTAGVCTMA 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITI 152 + + P + L + C R G+++ Sbjct: 127 WSAQFLPGAPRSLAACCARAGVSL 150 >gi|257463693|ref|ZP_05628083.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] gi|317061240|ref|ZP_07925725.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] gi|313686916|gb|EFS23751.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] Length = 1450 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 88/164 (53%), Gaps = 8/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+ET G +S +IIEIGAV++++ +R F + P G+ + + ITD Sbjct: 425 VVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDR-FSQLINP-GQSIPQNIVDVTNITDSM 482 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++++P + F +F + + +AHNA FD+G++ + ++ +P+ IDTL + Sbjct: 483 VQNEPKLEEVLPNFLEFI--RGSILVAHNADFDIGYLKQQCKKYGYSDFNPA-FIDTLQM 539 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 A+ +P + L L K+ G+ + + H A+ D ++++ Sbjct: 540 AKDLYPELKQFGLGPLNKKLGLYLENH--HRAVDDCQATGNMFL 581 >gi|89894618|ref|YP_518105.1| hypothetical protein DSY1872 [Desulfitobacterium hafniense Y51] gi|89334066|dbj|BAE83661.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 929 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 60/182 (32%), Positives = 90/182 (49%), Gaps = 13/182 (7%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64 K + +V DIETTG D ND IIE A+ ++ + F V + P R+ PE L+L G Sbjct: 3 KGKIVVIDIETTGFDIYNDEIIEFAAL-CIEEGEEAEAFSVLISP--RRQVPERILRLTG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ E LK S + + D F Q+A + HN +FD+GF+ L ++ L Sbjct: 60 ISPEELKQAGSLHAYRDKILDLF--QDAIIVGHNVEFDLGFLEQALTIHFENTL-----W 112 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL IAR +P+ + L L K G+T ++ H AL D+ ++ G ++ Sbjct: 113 DTLEIARILYPNMPKYKLGDLTKSLGLTPLEKA-HRALFDARAAWELLQACWEKGLTLDL 171 Query: 184 GF 185 GF Sbjct: 172 GF 173 >gi|219683338|ref|YP_002469721.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp. lactis AD011] gi|219620988|gb|ACL29145.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp. lactis AD011] Length = 123 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 4/107 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D+ETTG ++NDRI EIGAV++ D +R Q L GR+ S +L GI+ Sbjct: 9 MNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQ--LVNPGRRVSARITELTGIS 66 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 +E L+D+P I +F + +N + HN KFD+ F+ A +R+ Sbjct: 67 NEMLEDQPVIEDILGDFIHW--TENDRLVGHNTKFDLSFLIANAERV 111 >gi|27367395|ref|NP_762922.1| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6] gi|27358964|gb|AAO07912.1| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6] Length = 204 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 19/173 (10%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+++D + +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPNLGDRAIEIGAVKIVDGEVVD-SFQQLMNP-GFRVSSFIESYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ PS + + F +F +N IAHNA FD F++AEL+RIN D +L Sbjct: 66 MLRSAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCDY--SGEFACSLL 121 Query: 129 IARR---KHPSSRNDLNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMM 175 +ARR PS + L L + I I HR AL D+ + + +++ M+ Sbjct: 122 VARRLIQDAPSHK--LGELVRYKNIDNDGIFHR----ALADAQMTAKLWLLMV 168 >gi|312143668|ref|YP_003995114.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus'] gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus'] Length = 1401 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTGL+ IIEIGAV++ K F+ F+ + KN P + ++ GI Sbjct: 389 VVFDLETTGLNPSQHDIIEIGAVKIKAGEKIAE-FETFI--DIDKNVPAKITEITGINTS 445 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F DF + +AHNA FD GF+ LQ++ + + + ++DTL+ Sbjct: 446 MLTGAPKLKAAIERFIDFIGD--GVLVAHNADFDYGFLRTALQKLEINRKEYT-VLDTLA 502 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++R S+N LN+L + + + + H AL D+ +++ K++ Sbjct: 503 LSRALIKDSKNYKLNTLAEYFSVELDDH--HRALADADATAEILKKLLA 549 >gi|255321503|ref|ZP_05362661.1| mature parasite-infected erythrocyte surface antigen [Campylobacter showae RM3277] gi|255301359|gb|EET80618.1| mature parasite-infected erythrocyte surface antigen [Campylobacter showae RM3277] Length = 311 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 15/173 (8%) Query: 3 RKNKMRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPE 58 R+N+++ +F DIET+G + +IIEIGA++L + + F+ F+ P +N E Sbjct: 64 RRNEIKDQIFCVVDIETSG-GINSGQIIEIGALKLQNGEIIGK-FETFVYAPYVPENISE 121 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 L GIT E LK+ PS + + +F F + + ++AHN +FD GFI+A L+ + L Sbjct: 122 ---LTGITAEHLKNAPSLAFVMEQFKVFLGQ--SVFVAHNVRFDYGFISATLEALGYGEL 176 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R + T+ +ARR S + L +L + GI +H H AL D+ ++++ Sbjct: 177 -LNRKLCTIDLARRTIASPKYGLGTLKEILGIDNTH---HRALSDAIAAAEIF 225 >gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656] gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656] Length = 1510 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 19/174 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT- 66 + +VFDIETTG + ++IIEIGAV+++ +R + F+ P P ++ +T Sbjct: 479 KYVVFDIETTGFSPEKNKIIEIGAVKVIGGEIVDR-YSTFINP----EVPIPFRIEELTS 533 Query: 67 --DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSR 122 D+ + P+ I +F +F ++ +AHNA FD+ FI N L + +P Sbjct: 534 IRDDMVITSPTVDVILPQFMEFC--KDCIMVAHNADFDMSFIKRNCALLGMECNP----T 587 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+DT+++AR P +R L+++ K I++ H H A+ D+ +++++K + Sbjct: 588 IVDTVALARVLLPQLNRFKLDTVAKALNISLDHH--HRAVDDAACTAEIFVKFI 639 >gi|254360642|ref|ZP_04976791.1| exoribonuclease T [Mannheimia haemolytica PHL213] gi|153091182|gb|EDN73187.1| exoribonuclease T [Mannheimia haemolytica PHL213] Length = 215 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET GL+++ D ++E+ A+ L +D Y ++ + P G +PE+LK +G Sbjct: 23 VVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNG 82 Query: 65 I-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ + + E + + Q A +AHNA FD GF+ A ++RIN Sbjct: 83 IDIDNPLRGAVAENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAIKRINAK 142 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DP P + DT ++A + + L C+ I + H AL D+ ++++ M Sbjct: 143 RDPFHPFAMFDTATLAGFMY--GQTVLVKACQVAKIPFDGKQAHSALYDTERTAELFCAM 200 Query: 175 M 175 + Sbjct: 201 V 201 >gi|219850553|ref|YP_002464986.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM 9485] gi|219544812|gb|ACL26550.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM 9485] Length = 233 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 17/176 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68 V D+ETTGLD ++D +I IGAV + + +T+ + P GR+ S E++++H +T E Sbjct: 40 VIDVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVESIRVHHLTPE 99 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----RINKDPLDPSRII 124 L+D P + + +E + + H A+ DV FINA L+ R+ + LD +R+ Sbjct: 100 ELRDAPPPAEVLAELLRLIAGRVL--VVHVAEIDVRFINAALKPFGGRLRRPILDTARLA 157 Query: 125 DTLSI-------ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 TL + R P+ +L L G+ I ++H AL D+ + ++I Sbjct: 158 MTLHLNAQWLGELPRDMPAPAVELRGLTGALGLPIY--AQHNALNDAVTTAQLFIA 211 >gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1] gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit family [Aromatoleum aromaticum EbN1] Length = 478 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 92/157 (58%), Gaps = 12/157 (7%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 DIETTG + +D I EI +E+ + R + + P+ R P+ + ++ GI++ + Sbjct: 22 DIETTGTTASHDSITEIAIIEIGE--DGVREWSSLVRPDSR--IPDYIERMTGISNHMVA 77 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 D P+F+ + +D +E+ ++AHNA+FD GFI A +R+ D P +++ T+ ++R Sbjct: 78 DAPTFAELAETVFDRLHERV--FVAHNARFDHGFIRAAFRRLGVD-FRP-KVLCTVRLSR 133 Query: 132 RKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLL 167 R +P R++L++L R+G+ + ++H AL D+ L Sbjct: 134 RLYPQERRHNLDALIARHGLEVE--AQHRALGDAQAL 168 >gi|160934103|ref|ZP_02081490.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753] gi|156866776|gb|EDO60148.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753] Length = 1451 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTGL + NDRI EIGAV + + T+ F F+ P R + +L GI D Sbjct: 435 ISFDLETTGLSAANDRITEIGAVRIHNGEITD-VFNTFVNPE-RPIPAKITELTGINDSM 492 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P F +F ++ +AHNA FD FI A R N D + +DT+ + Sbjct: 493 VIDAPKEKEAVEAFLEFCGKEPV-LLAHNAPFDTSFIQAVAARHNLD--FSNTYLDTVPM 549 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R P +N L+++ K + ++ + H A D+ +L+++++ ++ Sbjct: 550 CRAMLPGIKNHKLDTVAKH--LKLAPFNHHRASDDAMVLANIFLVLL 594 >gi|238916793|ref|YP_002930310.1| DNA polymerase III subunit alpha, the Gram-positive type [Eubacterium eligens ATCC 27750] gi|238872153|gb|ACR71863.1| DNA polymerase III subunit alpha, the Gram-positive type [Eubacterium eligens ATCC 27750] Length = 1513 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 19/172 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT--- 66 +VFD+ETTG ++ DRIIEIGAV++ + +R F F+ P P ++ +T Sbjct: 474 VVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDR-FSTFVNP----EIPIPFRIETLTHIN 528 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124 D+ + + P I EF +F + A +AHNA+FD FI AE IN D + II Sbjct: 529 DQMVMNAPKIEEILPEFLEFC--EGAVMVAHNAEFDTSFIINKAEKIGINVD----TTII 582 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+ +A+ P+ N L++L K + + S H A+ D+ +D+++KM+ Sbjct: 583 DTVLLAQFLMPNLHNYKLDTLTKHLNVVL--ESHHRAVDDAAATADIFVKMI 632 >gi|91225444|ref|ZP_01260566.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01] gi|91189807|gb|EAS76080.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01] Length = 204 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 13/172 (7%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L++ + +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPTLGDRAIEIGAVKLVNGEVVD-SFQQLMNP-GFRVSSFIENYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ PS + + F +F +N IAHNA FD F++AEL+RIN +L Sbjct: 66 MLRSAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCGY--SGEFACSLL 121 Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +ARR + PS + L L RY + H AL D+ + + +++ M+ G Sbjct: 122 VARRLIQEAPSHK--LGELV-RYKNIDNDGVFHRALADAQMTAKLWLLMVEG 170 >gi|269963944|ref|ZP_06178254.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831319|gb|EEZ85468.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 204 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 13/170 (7%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+++D + +FQ + P G + SP GIT+ Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKIVD-GEVVDSFQQLMNP-GFRVSPFIEGYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ PS + + F +F +N IAHNA FD F++AEL+RI D +L Sbjct: 66 MLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERI--DCGYSGEFACSLL 121 Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +ARR PS + L L RY + H AL D+ + + +++ M+ Sbjct: 122 VARRLIQDAPSHK--LGELV-RYKNIENDGVFHRALADAQVTAKLWLLMV 168 >gi|241759673|ref|ZP_04757773.1| DNA polymerase III subunit [Neisseria flavescens SK114] gi|241319681|gb|EER56077.1| DNA polymerase III subunit [Neisseria flavescens SK114] Length = 463 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 13/170 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 +V D+ETTG +S DRI E+ V + RT N ++ PE +L I DE Sbjct: 22 VVVDLETTGGNSYQDRITEVALVRF----EQGRTTHYEQLVNPCRSIPEFVARLTEIHDE 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ P F+ I + Q A +AHN++FD F+ E RI+ D PS + T+ Sbjct: 78 TVKNAPVFADIAGDLLPLL--QGAVVVAHNSRFDYTFLRHEFARIHTDFAAPS--LCTVQ 133 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++RR +P ++ L+S+ +R GI ++R H A+ D L D Y+++ + Sbjct: 134 LSRRLYPEFYKHSLDSIIERTGIQTANR--HRAMTDVVALCD-YLELSLA 180 >gi|15614254|ref|NP_242557.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus halodurans C-125] gi|10174308|dbj|BAB05410.1| ATP-dependent DNA helicase [Bacillus halodurans C-125] Length = 942 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 9/164 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V DIETTG ++ DRIIEIGAV + D + +F + P R P +L GI+ Sbjct: 4 RFVVIDIETTGQSVAQGDRIIEIGAVVIED-EEAVESFCTLVNPE-RSIPPFIEELTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE +K P+F E + ++AHN FD+ F+ L+ PL IIDT Sbjct: 62 DEMVKGAPTFHQCIPELMSML--EGGVFVAHNVHFDLSFLQKLLEHEGYGPL-LVPIIDT 118 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R P+ + L++L ++ G + H + H A D+ + +D Sbjct: 119 VELSRILLPTEESYKLSALTEQLG--LEHENPHRADSDAKVTAD 160 >gi|288554371|ref|YP_003426306.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4] gi|288545531|gb|ADC49414.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4] Length = 220 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 9/169 (5%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +FD ETTG + DR+IEI V + +TFQ F+ P+ + PE + L GI+ E Sbjct: 30 IFDTETTGFAINGADRMIEIAGVRVAGLEVQEQTFQTFVNPD--REIPEKITSLTGISGE 87 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +KD PS F+ F + +++ W+ H FD+ + EL R +K D ++DTL Sbjct: 88 KVKDAPSSLEALERFFQFNEDIDSKLWVGHYVSFDMMVVKKELLR-HKYTYDTPLVVDTL 146 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +PS DL ++G + R H AL D+ + ++ ++M Sbjct: 147 DLIGYLNPSRDMRDLEVYALQFGTLVYER--HQALGDAMTTAHLFCELM 193 >gi|261408383|ref|YP_003244624.1| hypothetical protein GYMC10_4596 [Paenibacillus sp. Y412MC10] gi|261284846|gb|ACX66817.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. Y412MC10] Length = 246 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 92/174 (52%), Gaps = 9/174 (5%) Query: 5 NKMRKIVFDIETTGLDSKN-DRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62 +++ +VFD+ETTG + ++ D I+ GA+ ++ + N TF + + +G SP +L Sbjct: 57 DELEVVVFDLETTGFNHQHGDEILSFGAIRVIGEQVIENETFHM-IVNSGAPVSPFIAEL 115 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + + P +F F + +AH A D GF+NA L + +K L R Sbjct: 116 TGITQQMVDAAPPLMEGLHDFMAFIGGR--VLVAHAAAHDRGFLNAALWKTSKVRLT-HR 172 Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ +A+R +P ++ L+ L + GI + R H AL D+ + + ++ M Sbjct: 173 LLDTMMLAQRLYPEQKDYSLDELLRSSGIPVEGR--HHALSDARMTARLWADYM 224 >gi|329929369|ref|ZP_08283117.1| exonuclease, DNA polymerase III, epsilon subunit family [Paenibacillus sp. HGF5] gi|328936456|gb|EGG32901.1| exonuclease, DNA polymerase III, epsilon subunit family [Paenibacillus sp. HGF5] Length = 246 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 92/174 (52%), Gaps = 9/174 (5%) Query: 5 NKMRKIVFDIETTGLDSKN-DRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62 +++ +VFD+ETTG + ++ D I+ GA+ ++ + N TF + + +G SP +L Sbjct: 57 DELEVVVFDLETTGFNHQHGDEILSFGAIRVIGEQVIENETFHM-IVNSGAPVSPFIAEL 115 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + + P +F F + +AH A D GF+NA L + +K L R Sbjct: 116 TGITQQMVDAAPPLMEGLHDFMAFIGGR--VLVAHAAAHDRGFLNAALWKTSKVRLT-HR 172 Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ +A+R +P ++ L+ L + GI + R H AL D+ + + ++ M Sbjct: 173 LLDTMMLAQRLYPEQKDYSLDELLRSSGIPVEGR--HHALSDARMTARLWADYM 224 >gi|193212627|ref|YP_001998580.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327] gi|193086104|gb|ACF11380.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB 8327] Length = 232 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 22/184 (11%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 R +++D ETTG D ++DRII IGAV E++D + +F+V L + +A+ +H Sbjct: 44 RFVIYDTETTGFDFRHDRIISIGAVGTKGEVIDIAD---SFEVLL-RQEVCSERDAVTVH 99 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 G+ + S F D+ NA +AH+A FD+ IN L R L + Sbjct: 100 GLLKRDIDSGLEESEAVCRFLDYLG--NAVIVAHHADFDIAMINQVLSRRFGMRL-FNEA 156 Query: 124 IDTLSIARR---------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT S A+R H L++LC RYGI + R H A D++L + ++ ++ Sbjct: 157 LDTASFAKRLEKGPYYNLAHKGGEYRLDNLCARYGIRLYDR--HTAPGDAYLTAQLFQRL 214 Query: 175 MVGG 178 + G Sbjct: 215 LALG 218 >gi|261416372|ref|YP_003250055.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372828|gb|ACX75573.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326099|gb|ADL25300.1| exonuclease, DNA polymerase III, epsilon subunit family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 188 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 7/141 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG +++RI+EIG + L+D S+ T+ + P G+ +P +L GITDE + Sbjct: 6 VVDLETTGGHGEDNRIMEIG-IALMDGSEIVETYHALVDP-GKPITPFVRELTGITDEMV 63 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +P F I Q+ ++AHN +FD ++ AEL+R +P+R+ T+ ++ Sbjct: 64 SGQPQFGVIAEHVAALL--QDRIFVAHNVQFDCKYMTAELKRCCIK-FNPARLC-TVKLS 119 Query: 131 RRKHPSSRN-DLNSLCKRYGI 150 RR P + L+ L + G+ Sbjct: 120 RRVFPGQPSYSLHKLTESLGL 140 >gi|296140382|ref|YP_003647625.1| DNA polymerase III subunit epsilon [Tsukamurella paurometabola DSM 20162] gi|296028516|gb|ADG79286.1| DNA polymerase III, epsilon subunit [Tsukamurella paurometabola DSM 20162] Length = 610 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 22/207 (10%) Query: 10 IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG K D I EIGAV++ + F + P R +P L GIT Sbjct: 23 VVVDLETTGGSPKGGDAITEIGAVKVRG-GEVLGEFATLVDPE-RGIAPHITHLTGITTA 80 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+ +S+ F +F Q A +AHNA+FD+GF+ A P + + T+ Sbjct: 81 MVTGAPTIASVLPAFLEF--AQGAVLVAHNARFDIGFLKAAAA-ATGTPWPKPQTLCTVQ 137 Query: 129 IARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +ARR + PS + + R T +HR AL D+ DV ++ G N Sbjct: 138 LARRVLTRDEAPSVKLSEMARLFRAETTPTHR----ALDDARATVDVLHGLI--GRVGNL 191 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDK 210 G +T F E + +P+++ +R K Sbjct: 192 GIRT-----FAELRGHLPSVTPQQRAK 213 >gi|171920237|ref|ZP_02690314.2| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902634|gb|EDT48923.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 1442 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL D IIE GA+ + + + Q F+ P N L I+ E Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINE-NITNLTNISQEM 468 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127 + + + + + F+ N +AHN FD+ FIN L + +PL +PS IDTL Sbjct: 469 VNNAIDEKTALLKIKEIFD--NHILVAHNGINFDINFINQRLLKWGLEPLKNPS--IDTL 524 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I+R +P + L ++CK+Y + + H A D+ +L+D + Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADAF 568 >gi|330448476|ref|ZP_08312124.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492667|dbj|GAA06621.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 214 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D ETTGL ++ DR IEIGAV+L + + FQ + P G + S GI++ Sbjct: 18 VILDFETTGLSPNQGDRAIEIGAVKLQNGEVVGQ-FQQLMNP-GFRVSSFIEGYTGISNN 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ PS + +EF DF + N +AHNA FD F++AEL++IN+ ++ Sbjct: 76 MLRTAPSCDVVMNEFADFIGDAN--LVAHNASFDQRFLDAELEQINRHY--GGTFTCSML 131 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR + + N Y + H AL DS + + +++ M+ Sbjct: 132 IARRLYQDAPNHKLGTLVDYKNIYHNGVFHRALADSEMTARLWLVML 178 >gi|108805769|ref|YP_645706.1| hypothetical protein Rxyl_2984 [Rubrobacter xylanophilus DSM 9941] gi|108767012|gb|ABG05894.1| DNA polymerase III, epsilon subunit [Rubrobacter xylanophilus DSM 9941] Length = 560 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 9/142 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG ++ I E+GA++L+ +R F + P GR P +L GITDE Sbjct: 34 VVFDLETTGSSAREGGITELGALKLVRGRVVDR-FSTLVNP-GRPIEPFVARLTGITDEM 91 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + F +F + + +AHNA FD F+ A R + +P ++DTL + Sbjct: 92 VSGAPPAREVIPRFEEF--AEGSVLVAHNAGFDCSFLAA--ARGGRGLPNP--VLDTLRL 145 Query: 130 ARRKHPSSRN-DLNSLCKRYGI 150 AR P R L++L +G+ Sbjct: 146 ARLLVPGLRRYRLSALVSHFGV 167 >gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263] gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263] Length = 1442 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 13/169 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL + D IIEI AV++ + + TFQ F+ P+ R + +L ITD+ Sbjct: 428 VFFDLETTGLYAGRDAIIEIAAVKIKNKHVLD-TFQTFVNPH-RPIPQKITELTSITDQM 485 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTL 127 + + F DF + + AHNA FD+GF++ L+R P+ I +DTL Sbjct: 486 VAQGKEEEAAVRAFLDFCDGKI--LAAHNASFDMGFMSIALERYGI----PNTITYVDTL 539 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P +R++L L + I + H H A+ DS + +++++M Sbjct: 540 PMARTLIPDIARHNLKKLASYFKIDMGHH--HRAIDDSICSAKIFVRLM 586 >gi|328470587|gb|EGF41498.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus 10329] Length = 204 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 90/175 (51%), Gaps = 19/175 (10%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L+D + +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPTLGDRAIEIGAVKLVDGEVVD-SFQQLMNP-GFRVSSFIENYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ PS + + F +F +N IAHNA FD F++AEL+RIN +L Sbjct: 66 MLRIAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCGY--SGEFACSLL 121 Query: 129 IARR---KHPSSRNDLNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMMVG 177 +ARR PS + L L + I I HR AL D+ + + +++ M+ G Sbjct: 122 VARRLIQDAPSHK--LGELVRYKNIDNDGIFHR----ALADAQMTAKLWLLMVEG 170 >gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM 6192] gi|306532600|gb|ADN02134.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM 6192] Length = 198 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGLD ++EI V+ R F L E K+HGI D+ Sbjct: 22 VTFDLETTGLDPVRHSVVEIACVKF--QGGEPRAFFSLLVKPPHPIPAEVTKIHGIGDQD 79 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P S+ F +AHNA FD+ F+ E R + P R IDT + Sbjct: 80 VEEAPPLPSVLPMLESFVGTHL--LVAHNAPFDLSFLRMEYARCGR-PYPGFRAIDTRLL 136 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 AR P R L SL + I + H H AL D+ D++ + Sbjct: 137 ARSVLPHLGRYSLASLTRALDIPLQHH--HRALSDAWACGDLFYAL 180 >gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247] gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM 43247] Length = 595 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 20/174 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG D DRI EIGAV++ + F + P R P+ + L GIT Sbjct: 39 VVVDLETTGSDPAGDRITEIGAVKIRG-GEVLGEFATLVDPE-RSIPPQIVTLTGITHAM 96 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSRIIDT 126 + P + F +F + + +AHNA+FD+GF+ QR++ D PL + T Sbjct: 97 VSAAPRIEEVLPAFIEF--ARGSILVAHNARFDMGFLRRNAQRLHLDFPFPLS----LCT 150 Query: 127 LSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++ARR + P+ R L++L + +++ R H AL D+ +V+ ++ Sbjct: 151 VTMARRILHREEAPTVR--LSALADLFDVSV--RPTHRALDDARATVEVFHHLL 200 >gi|326692542|ref|ZP_08229547.1| DNA polymerase III, alpha subunit [Leuconostoc argentinum KCTC 3773] Length = 1437 Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL + D+IIE+ AV+ + F ++ P G S +L ITD Sbjct: 420 VAFDLETTGLSAVTDKIIELSAVK-MQLGNVVDQFSEYINP-GFPLSEFTTELTSITDSM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + S + F D+ + A I HN FD+GF+NA R K P + +IDTL Sbjct: 478 VANADPESDVIQRFRDWVGD--AVLIGHNVTFDIGFMNAAYARYQK-PAIGNPVIDTLPF 534 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +P ++ L ++ KR+ I + H A+ DS + ++M Sbjct: 535 TRWLYPDYKSYRLGTIAKRFNINLEQ--AHRAIFDSETTGHIAWRLM 579 >gi|254510913|ref|ZP_05122980.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacteraceae bacterium KLH11] gi|221534624|gb|EEE37612.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacteraceae bacterium KLH11] Length = 470 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 5/167 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTGL D I++IGAV ++ L G + ++H I D Sbjct: 279 VVFDTETTGLLPHKDEIVQIGAVRVIKGRIVEGEQLDMLVDPGIPIPAASTRVHKINDAM 338 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + F F ++A +AHNA FD+ F++ +R+ + P ++DT+ + Sbjct: 339 VLGAPDIAKAGLIFHQF--SRDAVIVAHNAPFDMAFLHRHAKRMGVEWTHP--VLDTVLL 394 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +S + L+++C R G+TI +H AL D+ ++V ++M+ Sbjct: 395 SAVLFGASETHTLDAVCARLGVTIPATLRHTALGDAVATAEVLVRML 441 >gi|261753605|ref|ZP_05997314.1| DNA polymerase III [Brucella suis bv. 3 str. 686] gi|261743358|gb|EEY31284.1| DNA polymerase III [Brucella suis bv. 3 str. 686] Length = 233 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 7/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 18 IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 76 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172 + T+ ARR L+ + G+ + HR HGAL D++L + +Y+ Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARMGHR--HGALEDAYLTAGLYL 183 >gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 1402 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTG DS+ DRIIEIGAV++ + T+R F F+ P G K +L GI + Sbjct: 391 VVVDIETTGFDSQRDRIIEIGAVKIENGQITDR-FSTFVDPEG-KIPVRISELTGIYQDM 448 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P EF F ++ +AHNA+FD+GF+ Q + IDTL + Sbjct: 449 VDKAPKLIDAILEFERF--ASSSVLVAHNAQFDIGFLKKAYQECG--IIFDYTYIDTLEL 504 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +RR S LN + + + + H H A D+ + ++I ++ Sbjct: 505 SRRLLTDLSSYKLNKVAEFLNVELRHH--HRADSDAETTAGIFISLL 549 >gi|269215783|ref|ZP_06159637.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122] gi|269130733|gb|EEZ61809.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122] Length = 291 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT-DE 68 +V DIETTGL+ D IIE+ A+ + +T+ FQ + G + A KL G++ Sbjct: 129 VVVDIETTGLNPNKDEIIELAAIRVRGGRETD-AFQCLVRCGGELSDAIA-KLTGLSHSR 186 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + F +F ++ +AHNA+FD+GFI + + ++ D D + +DTL+ Sbjct: 187 LMAEGLILENALMNFLEFVSDDLI--VAHNAEFDIGFIQSACEELDWDDFD-NDYLDTLA 243 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR+K P S + L+SL +R + + +R H AL D L + +K+ Sbjct: 244 LARKKLPQISDHRLSSLAER--LHLENRQPHRALSDCRLTHCLLVKL 288 >gi|317051112|ref|YP_004112228.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5] gi|316946196|gb|ADU65672.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5] Length = 169 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL ++ R+IEI AV++ + + F L G S +HGIT Sbjct: 5 VAIDVETTGLSPARGARVIEIAAVKM-EQGQVIAEF-CSLIQVGVPVSAATTGVHGITTA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L +P+ I+ +F F +AHNA FD+ F+++ELQR+ +PS TL Sbjct: 63 MLAGQPAPGEIWPQFIWFIEHHPI--VAHNAPFDMRFVHSELQRLGLSMANPSHC--TLR 118 Query: 129 IARRKHPSSRND-LNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKM 174 + RRK+P N L L + G H AL D+ L + V+ +M Sbjct: 119 LGRRKYPRLPNHKLEYLAQHVLGKLPPEIQLHRALGDARLTAMVWEEM 166 >gi|323485384|ref|ZP_08090732.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163] gi|323401247|gb|EGA93597.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163] Length = 263 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 10/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGLD K+D+IIEIGAV ++D + TF F+ P R+ +L GIT E Sbjct: 27 VAIDLETTGLDPKHDKIIEIGAVLVID-GEIKETFSTFVNPR-RELDGRIRELTGITGEM 84 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 P + +F ++ + H+ FD F+ +NK + IDTL++ Sbjct: 85 TAGAPDIGDVIGRVVEFC--RDLPLLGHHIIFDYSFLKRAA--VNKGLVFEKSGIDTLTL 140 Query: 130 ARRKHP-SSRNDLNSLCKRYGI--TISHRSKHGALLDSHLL 167 RR P + +L + + YGI T +HR+ A L +HLL Sbjct: 141 CRRFMPEEEKKNLENASRYYGIKQTDAHRALADA-LTAHLL 180 >gi|23500370|ref|NP_699810.1| exonuclease [Brucella suis 1330] gi|161620685|ref|YP_001594571.1| exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC 23365] gi|254702995|ref|ZP_05164823.1| exonuclease, RNase T and DNA polymerase III [Brucella suis bv. 3 str. 686] gi|260568091|ref|ZP_05838560.1| DNA polymerase III [Brucella suis bv. 4 str. 40] gi|23463988|gb|AAN33815.1| exonuclease, putative [Brucella suis 1330] gi|161337496|gb|ABX63800.1| Exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC 23365] gi|260154756|gb|EEW89837.1| DNA polymerase III [Brucella suis bv. 4 str. 40] Length = 224 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 7/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172 + T+ ARR L+ + G+ + HR HGAL D++L + +Y+ Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARMGHR--HGALEDAYLTAGLYL 174 >gi|226307078|ref|YP_002767038.1| DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4] gi|226186195|dbj|BAH34299.1| putative DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4] Length = 586 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 25/208 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + D I EIGAV++ L GR P ++L GIT Sbjct: 42 VVVDLETTGGSADQDSITEIGAVKIRGGEVLGE--MATLVDPGRSIPPYIVELTGITTAM 99 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P + F +F + A +AHNA FD+GF+ A R + P R++ T+ + Sbjct: 100 LIGAPPIERVLPAFLEF--AEGAVLVAHNAPFDIGFLKAAASRSAR-PWPSFRVLCTVKL 156 Query: 130 ARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQIN 182 ARR + PS + L++L + +T + H AL D+ DV ++ VG ++ Sbjct: 157 ARRVLTRDEAPSVK--LSALAHLFQVTT--QPTHRALDDARATVDVLHGLIDRVGNQGVH 212 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDK 210 + E +PNIS +R K Sbjct: 213 ---------SYSELVDYLPNISSHQRAK 231 >gi|229490475|ref|ZP_04384316.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis SK121] gi|229322765|gb|EEN88545.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis SK121] Length = 608 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 25/208 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + D I EIGAV++ L GR P ++L GIT Sbjct: 64 VVVDLETTGGSADQDSITEIGAVKIRGGEVLGE--MATLVDPGRSIPPYIVELTGITTAM 121 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P + F +F + A +AHNA FD+GF+ A R + P R++ T+ + Sbjct: 122 LIGAPPIERVLPAFLEF--AEGAVLVAHNAPFDIGFLKAAASR-SARPWPAFRVLCTVKL 178 Query: 130 ARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQIN 182 ARR + PS + L++L + +T + H AL D+ DV ++ VG ++ Sbjct: 179 ARRVLTRDEAPSVK--LSALAHLFQVTT--QPTHRALDDARATVDVLHGLIDRVGNQGVH 234 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDK 210 + E +PNIS +R K Sbjct: 235 ---------SYSELVDYLPNISSHQRAK 253 >gi|225572667|ref|ZP_03781422.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM 10507] gi|225039967|gb|EEG50213.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM 10507] Length = 1464 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTG + +IIEIGAV + D K F F+ P + P + +L I D Sbjct: 441 VVFDLETTGFSPMSCQIIEIGAVRVED-GKIVERFSTFVNP--KVPIPFRIEQLTSINDS 497 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + +F +F + A +AHNA FD+ F+ R+ P D + IDT+ Sbjct: 498 MVMDAPVIEEVLPKFLEFCS--GAVMVAHNADFDMSFVEFNCDRLGI-PHDFT-YIDTVG 553 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR PS +R L+++ K I + H H A+ D+ +D+++K + Sbjct: 554 MARFLLPSLNRFKLDTVAKALEIPLGHH--HRAVDDAACTADIFVKFV 599 >gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] Length = 1538 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 19/172 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66 +VFDIETTG ++IIEIGAV++ + +R F F+ P P E KL I+ Sbjct: 514 VVFDIETTGFSPLKNKIIEIGAVKVENGKIVDR-FSTFVNP----EVPIPFEIEKLTSIS 568 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124 D + P + +F +F + +A +AHNA FD+ FI NA +Q + +P ++ Sbjct: 569 DNMVLGAPKIEEVLPKFLEFCS--DAVMVAHNASFDMSFIRHNAMIQGKSFEP----TVL 622 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+S+AR P+ +R L+++ K + IS + H A+ D+ +++++K + Sbjct: 623 DTVSMARFLLPNLNRFKLDTVAKE--LRISLENHHRAVDDAGATAEIFVKFV 672 >gi|189346954|ref|YP_001943483.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] gi|189341101|gb|ACD90504.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] Length = 214 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD 67 +V D ETTGL + DR IEIGAV L+++ + FQ + P R +S E GIT+ Sbjct: 10 VVLDFETTGLSPQYGDRAIEIGAV-LVEHGEIVDRFQKLMNPGFRISSFIEGYT--GITN 66 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E LK +P + +EF F +N +AHNA FD F++ EL+R + + +L Sbjct: 67 EMLKGQPCCEEVMAEFSGFIAGRNI--VAHNASFDRRFLDFELKRAKR--VYEGACCCSL 122 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++RR + S N L +L GI + S H AL D+ + + +++ M+ Sbjct: 123 LVSRRIYQDSPNHRLQTLVTHAGIPETG-SFHRALADAEMTALLWMSMI 170 >gi|312876753|ref|ZP_07736732.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311796484|gb|EFR12834.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 1402 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTG DS+ DRIIEIGAV++ + T+R F F+ P G K +L GI + Sbjct: 391 VVVDIETTGFDSQRDRIIEIGAVKIENGQITDR-FSTFVDPEG-KIPVRISELTGIYQDM 448 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P EF F + +AHNA+FD+GF+ Q + IDTL + Sbjct: 449 VDKAPKLIDAILEFERF--ASGSVLVAHNAQFDIGFLKKAYQECG--IIFDYTYIDTLEL 504 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +RR S LN + + + + H H A D+ + ++I ++ Sbjct: 505 SRRLLTDLSSYKLNKVAEFLNVELRHH--HRADSDAETTAGIFISLL 549 >gi|291287661|ref|YP_003504477.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] gi|290884821|gb|ADD68521.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] Length = 228 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 94/175 (53%), Gaps = 15/175 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTGLD + RII + AV++ ++ K + F+ P E+++ H ITDE + Sbjct: 47 VIDTETTGLDLNDARIINVAAVKVQNF-KIIDFYNSFINPETEI-PKESIQWHNITDEMV 104 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPSRIID 125 DKP+ + +F +F ++ + + H+ FD+ IN E+ +IN + LD + +I Sbjct: 105 ADKPTAGEVLPDFLNFVDD--SIIVGHHVTFDIKMINKEMMDSFSCQINNNWLD-TMLIY 161 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + +I ++ R L+ L Y +T + R H AL D+ ++V+ KM++ S+ Sbjct: 162 SHAIIKK---DERYSLDYLLDLYNVTCNGR--HTALGDALATAEVFTKMIMQASR 211 >gi|291459111|ref|ZP_06598501.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291418365|gb|EFE92084.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 1517 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 15/168 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGIT 66 +VFDIETTG + D+IIEIGAV+L + +R VF+ P P + L I Sbjct: 493 VVFDIETTGFHPQTDKIIEIGAVKLREGKICDR-MDVFVNP----EIPIPFRITQLTSID 547 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + + + + EF F +A +AHNA FD GFI +R+ DP+ ++DT Sbjct: 548 DSMVIGERTIEELLPEFLSFCG--DAVIVAHNADFDTGFIRENARRLGLS-YDPT-VVDT 603 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + ++R P +R L+++ K GI++ + H A+ D+ +++Y K Sbjct: 604 VGLSRLLLPKLNRFKLDTVAKELGISLLNH--HRAVDDAEATAEIYQK 649 >gi|291280248|ref|YP_003497083.1| hypothetical protein DEFDS_1873 [Deferribacter desulfuricans SSM1] gi|290754950|dbj|BAI81327.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 200 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 14/178 (7%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSP-EALKLHGIT 66 V D ETTGL K R++EI AV L + + +R F + P +K P +A K+H I+ Sbjct: 14 VVDTETTGLSPYKGARLVEIAAVRLDEGLNIRLDRGFSTLINP--KKPIPFQAYKIHKIS 71 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIID 125 DE +KD P+ + F + +N ++AHNA FD FI+ ++ + PL +ID Sbjct: 72 DEMVKDAPTIEEVLPHFSKYV--ENTVFVAHNAPFDFKFIDYFYKKTGMNCPL--IAVID 127 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 TL ++RR P ++ L+SL + + I I+ +H A+ D+ + ++ K++ SQ Sbjct: 128 TLKLSRRIIPGLKSYSLDSLIQHFNIKLKINGSYRHRAIYDALHTAIIFKKLIEIESQ 185 >gi|297620852|ref|YP_003708989.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU 86-1044] gi|297376153|gb|ADI37983.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU 86-1044] Length = 231 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 11/169 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I +D ETTG+ +++DRI+EI A + + + + + + P G EA K+H ITD Sbjct: 4 RPIFYDTETTGIKAEHDRIVEIAAYDPI----SGCSLEELVNP-GIPIPKEASKVHHITD 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +KD P+F + +F +F + + IAH N FDV F+ E +R + + R DT Sbjct: 59 DMVKDAPTFKEVGQKFIEFCS-GDVILIAHNNDNFDVHFLRHEFKRHALE-MPEWRFFDT 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L ARR P R+ L L + Y I + + H AL D +L V+ KM Sbjct: 117 LKWARRYRPDLPRHALQFLREIYSIEAN--NAHRALDDVIVLHKVFEKM 163 >gi|227873963|ref|ZP_03992179.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268] gi|227840171|gb|EEJ50585.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268] Length = 178 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 9/174 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R IVFD+ET + KN+RI IG + +++ K ++ F + P + +KL GI+ Sbjct: 3 RFIVFDVETP--NRKNNRISAIG-ITVVEEGKISKEFYSLVNPETNFDYFN-VKLTGISK 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +KD P+F ++ + F++ +AHNA FD+ + L D +R + T+ Sbjct: 59 ASVKDAPTFPELWQQIEPLFSD--GMLVAHNASFDMNVLKNCLLDYEIDWKPYARYLCTV 116 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + R P + LN +C+ +GI++ H H A DSH +++ ++ + G+++ Sbjct: 117 KMGRSLFPDRSHKLNMVCEDFGISLQH---HRADSDSHACAEILLRYLEAGAEV 167 >gi|146300234|ref|YP_001194825.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] gi|146154652|gb|ABQ05506.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] Length = 209 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 15/182 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEAL 60 I + R +V D ETTG D +NDRI+ IGA+ L + +F+++L + S Sbjct: 18 ITIEETRFVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYLHQDHYDKSTA-- 75 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI + L +P+ +F DF ++ IAH+ FDV IN L+R N P Sbjct: 76 QIHGILKDLLVKRPTELEALQQFLDFLG--DSIIIAHHTVFDVTMINKALER-NGLPQLT 132 Query: 121 SRIIDTLSIARR----KHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++ +DT + ++ H R D L+ L ++ IS + +H AL D+++ + ++K Sbjct: 133 NKTLDTAYLYKKTLIQSHLFERKDHYTLDDLADKFD--ISKKDRHTALGDAYITAIAFLK 190 Query: 174 MM 175 ++ Sbjct: 191 IV 192 >gi|120436251|ref|YP_861937.1| exonuclease family protein [Gramella forsetii KT0803] gi|117578401|emb|CAL66870.1| exonuclease family protein [Gramella forsetii KT0803] Length = 223 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 17/178 (9%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R IVFD ETTG + DR++ IGAV + + S + + F+VFL +K +PE +K+HGI Sbjct: 37 IRFIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFL--EQKKFNPETVKIHGI 94 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +K S +F + QN+ +AH+A FD+ IN L R N P ++++D Sbjct: 95 IQNEKFEKLSELEALKKFLSYI--QNSVLVAHHAGFDMKMINKALSR-NGLPKLKNKVLD 151 Query: 126 TLSIARRKHPSSRN--------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T SI +K + N L+ + + Y I + R H A D+++ + +++K++ Sbjct: 152 T-SILYKKTRIATNFIDRDKIYSLDEIAEAYNIDLIDR--HTASGDAYITALIFMKLL 206 >gi|323694146|ref|ZP_08108325.1| DNA polymerase III subunit epsilon [Clostridium symbiosum WAL-14673] gi|323501863|gb|EGB17746.1| DNA polymerase III subunit epsilon [Clostridium symbiosum WAL-14673] Length = 226 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 10/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGLD K+D+IIEIGAV ++D + TF F+ P R+ +L GIT E Sbjct: 27 VAIDLETTGLDPKHDKIIEIGAVLVID-GEIKETFSTFVNPR-RELDGRIRELTGITGEM 84 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 P + +F ++ + H+ FD F+ +NK + IDTL++ Sbjct: 85 TAGAPDIGDVIGRVVEFC--RDLPLLGHHIIFDYSFLKR--AAVNKGLVFEKSGIDTLTL 140 Query: 130 ARRKHP-SSRNDLNSLCKRYGI--TISHRSKHGALLDSHLL 167 RR P + +L + + YGI T +HR+ A L +HLL Sbjct: 141 CRRFMPEEEKKNLENASRYYGIKQTDAHRALADA-LTAHLL 180 >gi|330815857|ref|YP_004359562.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia gladioli BSR3] gi|327368250|gb|AEA59606.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia gladioli BSR3] Length = 388 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 20/168 (11%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFLK 71 D+ETTG + + RI EIG VE+ + T+ + P + P ++ L GI+DE ++ Sbjct: 19 DLETTGGSAADHRITEIGVVEVGPQGVS--TWTSLIDPQ--QPIPAFIQQLTGISDEMVR 74 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIIDTL 127 P+FSSI +E F + +IAHNA FD GF+ AE +R N D ++ T+ Sbjct: 75 GAPTFSSIAAEL--FARLEGRLFIAHNASFDRGFLRAEFERAGFAFNPD------MLCTV 126 Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P SR+ L++L +R+ + + R H AL D+ L+ + ++ Sbjct: 127 RLSRALFPRESRHGLDALIERHALVPNAR--HRALADADLVWQFWQRL 172 >gi|163784927|ref|ZP_02179686.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159879804|gb|EDP73549.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 206 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 11/163 (6%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKL 62 N+ ++ D+ETTGL + N+ +IE+ A++ Y Q+ R+N + + L Sbjct: 8 NEATFVIIDLETTGLSASNNSVIEVAAIK---YQSGMIIDQLHHLTKPRENFIPSKVINL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT+ + DKP F I+ E ++F +++ +AHNAKFD+ F++ + + K+ L Sbjct: 65 TGITNAMVIDKPYFEDIYPEVYNFL--KDSIVVAHNAKFDISFLSEVHKIVFKNNLRLHY 122 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 I T ++ARR P + L+SL G I+ + KH AL D+ Sbjct: 123 IC-TDNLARRIFPEIQKKSLSSLTNYLG--INFKQKHRALSDA 162 >gi|86741790|ref|YP_482190.1| hypothetical protein Francci3_3104 [Frankia sp. CcI3] gi|86568652|gb|ABD12461.1| DNA polymerase III, epsilon subunit [Frankia sp. CcI3] Length = 584 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 77/168 (45%), Gaps = 18/168 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHGITD 67 +VFD+ETTG D I EIGAV + + R L G P L GITD Sbjct: 31 VVFDLETTGTSPGRDEITEIGAVRV----RGGRILAEMATLVRPGVGIPPMVSVLTGITD 86 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P + + F +F + A +AHNA FD+GF+ A ++ + P+ +DTL Sbjct: 87 VMVATAPPVTQVLPTFLEF--ARGAVLVAHNAPFDLGFLRAAVE-LCGYPVPVWEYLDTL 143 Query: 128 SIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 IARR + P R L SL + + R H AL D+ DV Sbjct: 144 RIARRVVTRDESPDCR--LTSLASLFRSPVEPR--HRALADARATVDV 187 >gi|309812650|ref|ZP_07706394.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185] gi|308433345|gb|EFP57233.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185] Length = 608 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 9/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ET G I EIGAV++ F + P G P+ +L GIT Sbjct: 29 VIVDLETAGGRPGAQGITEIGAVKVRGGEVLGE-FATLVDP-GCAIPPQIQRLTGITTAM 86 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P +S+ F++F +A +AHNA FDVGF+ A + + P ++DT+ + Sbjct: 87 VHNAPKLASVLPAFFEFLGP-DAVLVAHNAPFDVGFLTAAARDLEV-PWPAPAVVDTVKL 144 Query: 130 ARRKHP--SSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P RN L +L +G +++ H AL D+ DV ++ Sbjct: 145 ARALVPRDEVRNHRLGTLAAHFGASVN--PNHRALADAQATVDVLHALL 191 >gi|302519143|ref|ZP_07271485.1| DNA polymerase III [Streptomyces sp. SPB78] gi|302428038|gb|EFK99853.1| DNA polymerase III [Streptomyces sp. SPB78] Length = 664 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 9/164 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ET+GL ++ DR++ + V + + F + P P + +HG+T E L Sbjct: 74 LVDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDPG---CDPGPVDVHGLTRERL 130 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P+F I Q+ +AHNA+FD F+ E R L +R + TL++ Sbjct: 131 SGAPAFGQIAGRLGAML--QDRVLVAHNAQFDYDFLAHEFARARLY-LPVTRRLCTLALN 187 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R+ P +R+ L SL YG+ + H AL D+ +L+ ++++ Sbjct: 188 RQVDPPTRDMKLGSLAAHYGVPRTR--AHDALDDTRVLAGIFLR 229 >gi|291542732|emb|CBL15842.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus bromii L2-63] Length = 1452 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 I FDIETTGL + D+I EIGAV++ + T+ TF F P P+ + +L GITD+ Sbjct: 436 ICFDIETTGLSAARDKITEIGAVKVENGVITD-TFSTFANP--EMPIPQKITQLTGITDD 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD PS S F +F + +AHNA FD FI + + ++ S IDT++ Sbjct: 493 MVKDAPSQSEAVGAFLEFAGDN--VLVAHNAPFDTSFIAKACEDMGREYNYTS--IDTVA 548 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I+R +N L+++ K + + + H A D+ +L+ ++I + Sbjct: 549 ISRAILTDIKNCKLDTVAKF--LRLGDFNHHRATDDAEMLARIFINL 593 >gi|110638081|ref|YP_678290.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC 33406] gi|110280762|gb|ABG58948.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC 33406] Length = 449 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 14/171 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + DIETTG + +RIIEI A+ D K T+Q + P R+ L GI Sbjct: 1 MMYSIIDIETTGGHASGNRIIEI-AIYKFDGEKITDTYQTLINPE-RRIPVFITSLTGID 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + D P F+ + E DF +++ ++AHN FD F+ ELQ +N P + ++ T Sbjct: 59 TEMVADAPVFADVAREITDF--TRDSVFVAHNVNFDYTFVKKELQALNM-PYNLPKLC-T 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA-------LLDSHLLSD 169 + ++R+ P L +LC GI + +R + LL+ LL+D Sbjct: 115 VRLSRKIFPGLPSYSLGNLCGSLGIDVQNRHRAAGDAEATVRLLNKLLLND 165 >gi|134299597|ref|YP_001113093.1| DNA polymerase III subunit epsilon [Desulfotomaculum reducens MI-1] gi|134052297|gb|ABO50268.1| DNA polymerase III, epsilon subunit [Desulfotomaculum reducens MI-1] Length = 930 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 18/169 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 + D+ET+GLD D IIEIG V+++D K +F + P G P +K L GI D Sbjct: 5 VALDLETSGLDCLQDEIIEIGLVKMVD-GKEIDSFSTLIRPKGIL--PVKIKRLTGIKDH 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P + F + + HN KFD F++ +Q +PL DTL Sbjct: 62 ELQDAPKLQEVLPVILQFI--ADLPLVGHNVKFDYDFLSTAVQSPLANPL-----YDTLE 114 Query: 129 IARRKHPSSRND-LNSLCKRYGITI--SHR----SKHGALLDSHLLSDV 170 +++ P + N L LC GI I HR ++ A+L HLL+ Sbjct: 115 LSKYLMPGASNHRLGYLCSYLGIDIPNQHRALDDARGAAMLLIHLLNQC 163 >gi|306835084|ref|ZP_07468126.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC 49726] gi|304569032|gb|EFM44555.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC 49726] Length = 231 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 15/147 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLHGITDE 68 V D ETTG++ + DRIIE+ AV + ++ L P+G+ KNS +HGIT++ Sbjct: 33 VIDTETTGVNKRYDRIIELAAVRADAHFNPVDSWHTLLSPDGKAIKNS----HIHGITND 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-----NKDPLDPSRI 123 + P+FS ++ +F + + + +AHNA FD I AE+ R+ ++D P Sbjct: 89 MVATAPTFSDVYGDFTSYID--GMQLLAHNAPFDSKMIIAEVDRMTGVGDSEDEYFP--F 144 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGI 150 IDT+ +A++ +L +L R G+ Sbjct: 145 IDTIDLAKQMLDHGPYNLPALLDRLGL 171 >gi|297249562|ref|ZP_06933263.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str. B3196] gi|297173431|gb|EFH32795.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str. B3196] gi|326554073|gb|ADZ88712.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90] Length = 235 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 20 IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 77 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 78 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 135 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172 + T+ ARR L+ + G+ HR HGAL D++L + +Y+ Sbjct: 136 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 185 >gi|254699857|ref|ZP_05161685.1| DNA polymerase III, epsilon chain [Brucella suis bv. 5 str. 513] Length = 224 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172 + T+ ARR L+ + G+ HR HGAL D++L + +Y+ Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 174 >gi|228992309|ref|ZP_04152240.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM 12442] gi|228767334|gb|EEM15966.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM 12442] Length = 315 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + NDRII++ AV ++ ++ F F+ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDRIIQVAAVRYRNHELADQ-FVSFVNPE-RFIPNRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127 + D P+ + F F E +AHNA FD+ F+ NA++ R+ P + +IDT+ Sbjct: 69 VSDAPTIQEVLPLFLAFLGEDTI--VAHNASFDMRFLKSNAKMLRL---PEPKNIVIDTV 123 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A+R +RN L +L + GI + S H AL D + VY K Sbjct: 124 FLAKRYMKHARNHKLETLKRMLGIRL---SSHNALDDCITCAAVYQK 167 >gi|68535768|ref|YP_250473.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411] gi|68263367|emb|CAI36855.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411] Length = 222 Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 76/148 (51%), Gaps = 16/148 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLHGITDE 68 V D ETTG + + DRIIEI AV + ++ L P+G+ KNS +HGIT++ Sbjct: 23 VIDTETTGFNKRYDRIIEIAAVRADAHFNPVDSWHTLLNPDGKAIKNS----HIHGITND 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI------NKDPLDPSR 122 + P+FS ++ +F + + AHNA FD I AE+ R+ N+D P Sbjct: 79 MVATAPTFSEVYGDFTSYID--GMHLFAHNAPFDSKMIVAEVDRMTGVDDGNEDEFFP-- 134 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGI 150 IDT+ +A++ +L +L R G+ Sbjct: 135 FIDTIDLAKQMLDRGPYNLPALLDRLGL 162 >gi|186701836|ref|ZP_02971504.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186701125|gb|EDU19407.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 1442 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FDIETTGL D IIE GA+ + + + Q + P + N L I+ E Sbjct: 410 VIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFLVKPIQQINE-NITNLTNISQEM 468 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL-DPSRIIDTL 127 + + + + + F+ N +AHN FD+ FIN L + +PL +PS IDTL Sbjct: 469 VNNAIDEKTALLKIKEIFD--NHILVAHNGINFDINFINQRLLKWGLEPLKNPS--IDTL 524 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I+R +P + L ++CK+Y + + H A D+ +L+DV+ M Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEIAHRADYDAIVLADVFKVM 571 >gi|84514691|ref|ZP_01002055.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella vestfoldensis SKA53] gi|84511742|gb|EAQ08195.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella vestfoldensis SKA53] Length = 469 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 94/198 (47%), Gaps = 11/198 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTG D +++IGA+ +++ + L GR + +H ITD Sbjct: 277 VVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDLLVNPGRAIPASSTAVHRITDAM 336 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P +F F ++A +AHNA FD+ F + +I P ++DT+ + Sbjct: 337 VKDAPDMVHAGRKFHSF--ARDAVLVAHNAPFDLSFFHRYAPKIGMKFDHP--VLDTVLL 392 Query: 130 -ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK---MMVGGSQINFGF 185 A + + L+ L KR GI + + +H A+ D+ D++++ M+ FG Sbjct: 393 SAVLFGITEGHTLDELAKRLGIELLDKHRHTAIGDAIATRDIFLRMIPMLEARGLTTFGA 452 Query: 186 KTNEDRFFKEEKKTVPNI 203 E ++ K+ +P++ Sbjct: 453 VVAE---IRKHKRLLPDM 467 >gi|265989936|ref|ZP_06102493.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1] gi|263000605|gb|EEZ13295.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1] Length = 233 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 18 IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 76 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172 + T+ ARR L+ + G+ HR HGAL D++L + +Y+ Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 183 >gi|261750330|ref|ZP_05994039.1| DNA polymerase III [Brucella suis bv. 5 str. 513] gi|261740083|gb|EEY28009.1| DNA polymerase III [Brucella suis bv. 5 str. 513] Length = 233 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 18 IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 76 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172 + T+ ARR L+ + G+ HR HGAL D++L + +Y+ Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 183 >gi|17988995|ref|NP_541628.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str. 16M] gi|260756615|ref|ZP_05868963.1| DNA polymerase III [Brucella abortus bv. 6 str. 870] gi|260760045|ref|ZP_05872393.1| DNA polymerase III [Brucella abortus bv. 4 str. 292] gi|260763284|ref|ZP_05875616.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59] gi|260882432|ref|ZP_05894046.1| DNA polymerase III [Brucella abortus bv. 9 str. C68] gi|261216075|ref|ZP_05930356.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya] gi|261217238|ref|ZP_05931519.1| DNA polymerase III [Brucella ceti M13/05/1] gi|261220458|ref|ZP_05934739.1| DNA polymerase III [Brucella ceti B1/94] gi|261313312|ref|ZP_05952509.1| DNA polymerase III [Brucella pinnipedialis M163/99/10] gi|261318701|ref|ZP_05957898.1| DNA polymerase III [Brucella pinnipedialis B2/94] gi|261320109|ref|ZP_05959306.1| DNA polymerase III [Brucella ceti M644/93/1] gi|265986499|ref|ZP_06099056.1| DNA polymerase III [Brucella pinnipedialis M292/94/1] gi|265992959|ref|ZP_06105516.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether] gi|265996191|ref|ZP_06108748.1| DNA polymerase III [Brucella ceti M490/95/1] gi|17984832|gb|AAL53892.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str. 16M] gi|260670363|gb|EEX57303.1| DNA polymerase III [Brucella abortus bv. 4 str. 292] gi|260673705|gb|EEX60526.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59] gi|260676723|gb|EEX63544.1| DNA polymerase III [Brucella abortus bv. 6 str. 870] gi|260871960|gb|EEX79029.1| DNA polymerase III [Brucella abortus bv. 9 str. C68] gi|260917682|gb|EEX84543.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya] gi|260919042|gb|EEX85695.1| DNA polymerase III [Brucella ceti B1/94] gi|260922327|gb|EEX88895.1| DNA polymerase III [Brucella ceti M13/05/1] gi|261292799|gb|EEX96295.1| DNA polymerase III [Brucella ceti M644/93/1] gi|261297924|gb|EEY01421.1| DNA polymerase III [Brucella pinnipedialis B2/94] gi|261302338|gb|EEY05835.1| DNA polymerase III [Brucella pinnipedialis M163/99/10] gi|262550488|gb|EEZ06649.1| DNA polymerase III [Brucella ceti M490/95/1] gi|262763829|gb|EEZ09861.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether] gi|264658696|gb|EEZ28957.1| DNA polymerase III [Brucella pinnipedialis M292/94/1] Length = 233 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 18 IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 76 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172 + T+ ARR L+ + G+ HR HGAL D++L + +Y+ Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 183 >gi|118474671|ref|YP_892037.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp. fetus 82-40] gi|118413897|gb|ABK82317.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp. fetus 82-40] Length = 265 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 85/161 (52%), Gaps = 10/161 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIET+G + +IIEIGA++LLD + R PN +N E L GI L Sbjct: 75 VVDIETSG-GINSGQIIEIGALKLLDGVEIGRFESFVYAPNVPENISE---LTGIYAADL 130 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 PS +++ +F F + + ++AHN KFD FI+ L+R+ L RI T+ +A Sbjct: 131 AKAPSLANVLEKFKLFLGD--SVFVAHNVKFDYDFISISLERLGFGMLLNRRIC-TIDLA 187 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 RR S + L +L + GI+ +H H AL D+ ++++ Sbjct: 188 RRTIISQKYGLGTLKELLGISNAH---HRALNDAIAAAEIF 225 >gi|225629116|ref|ZP_03787149.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella ceti str. Cudo] gi|237817070|ref|ZP_04596062.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella abortus str. 2308 A] gi|225615612|gb|EEH12661.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella ceti str. Cudo] gi|237787883|gb|EEP62099.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella abortus str. 2308 A] Length = 248 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 33 IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 90 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 91 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 148 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172 + T+ ARR L+ + G+ HR HGAL D++L + +Y+ Sbjct: 149 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 198 >gi|240144403|ref|ZP_04743004.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] gi|257203586|gb|EEV01871.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] Length = 235 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 11/164 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D+E TGL++K D I+E+GAV + ++ ++ F LC N + PE + +L GIT+ Sbjct: 5 VVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDK-FGAILCQNVK--IPEKVTELTGITEA 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +F++F E + N FD GF+ N PL+ S +DTL Sbjct: 62 MVQGGMEKEEAMRQFFEFIGEDII--VGQNVIFDYGFLKQWAVNHNM-PLERS-AVDTLK 117 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +AR+ P + DL SLC +G + + H A D++ +Y Sbjct: 118 LARKFLPKEQKKDLESLCAYFG--VKRENAHRAFDDAYETWQIY 159 >gi|62317520|ref|YP_223373.1| exonuclease [Brucella abortus bv. 1 str. 9-941] gi|83269503|ref|YP_418794.1| DNA polymerase III subunit epsilon:exonuclease [Brucella melitensis biovar Abortus 2308] gi|148557905|ref|YP_001257609.1| putative exonuclease [Brucella ovis ATCC 25840] gi|189022776|ref|YP_001932517.1| DNA polymerase III, epsilon subunit [Brucella abortus S19] gi|225686408|ref|YP_002734380.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella melitensis ATCC 23457] gi|254691019|ref|ZP_05154273.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 6 str. 870] gi|254695674|ref|ZP_05157502.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 3 str. Tulya] gi|254698803|ref|ZP_05160631.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 2 str. 86/8/59] gi|254705882|ref|ZP_05167710.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis M163/99/10] gi|254711110|ref|ZP_05172921.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis B2/94] gi|254712430|ref|ZP_05174241.1| DNA polymerase III, epsilon chain [Brucella ceti M644/93/1] gi|254715502|ref|ZP_05177313.1| DNA polymerase III, epsilon chain [Brucella ceti M13/05/1] gi|254732250|ref|ZP_05190828.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 4 str. 292] gi|256015402|ref|YP_003105411.1| exonuclease, putative [Brucella microti CCM 4915] gi|256029491|ref|ZP_05443105.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis M292/94/1] gi|256111454|ref|ZP_05452474.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 3 str. Ether] gi|256157686|ref|ZP_05455604.1| DNA polymerase III, epsilon chain [Brucella ceti M490/95/1] gi|256253341|ref|ZP_05458877.1| DNA polymerase III, epsilon chain [Brucella ceti B1/94] gi|256256204|ref|ZP_05461740.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 9 str. C68] gi|256262453|ref|ZP_05464985.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|260167417|ref|ZP_05754228.1| DNA polymerase III, epsilon chain [Brucella sp. F5/99] gi|260544758|ref|ZP_05820579.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260564713|ref|ZP_05835198.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|261756828|ref|ZP_06000537.1| DNA polymerase III [Brucella sp. F5/99] gi|62197713|gb|AAX76012.1| exonuclease, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82939777|emb|CAJ12783.1| DNA polymerase III, epsilon subunit:Exonuclease [Brucella melitensis biovar Abortus 2308] gi|148369190|gb|ABQ62062.1| putative exonuclease [Brucella ovis ATCC 25840] gi|189021350|gb|ACD74071.1| DNA polymerase III, epsilon subunit [Brucella abortus S19] gi|225642513|gb|ACO02426.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella melitensis ATCC 23457] gi|255998062|gb|ACU49749.1| exonuclease, putative [Brucella microti CCM 4915] gi|260098029|gb|EEW81903.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260152356|gb|EEW87449.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|261736812|gb|EEY24808.1| DNA polymerase III [Brucella sp. F5/99] gi|263092188|gb|EEZ16485.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|326410781|gb|ADZ67845.1| DNA polymerase III, epsilon subunit [Brucella melitensis M28] Length = 224 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172 + T+ ARR L+ + G+ HR HGAL D++L + +Y+ Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 174 >gi|261885284|ref|ZP_06009323.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 243 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 85/161 (52%), Gaps = 10/161 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIET+G + +IIEIGA++LLD + R PN +N E L GI L Sbjct: 53 VVDIETSG-GINSGQIIEIGALKLLDGVEIGRFESFVYAPNVPENISE---LTGIYAADL 108 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 PS +++ +F F + + ++AHN KFD FI+ L+R+ L RI T+ +A Sbjct: 109 AKAPSLANVLEKFKLFLGD--SVFVAHNVKFDYDFISISLERLGFGMLLNRRIC-TIDLA 165 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 RR S + L +L + GI+ +H H AL D+ ++++ Sbjct: 166 RRTIISQKYGLGTLKELLGISNAH---HRALNDAIAAAEIF 203 >gi|224826335|ref|ZP_03699437.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224601436|gb|EEG07617.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 476 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 10/160 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTG DRI EIG + L+D + R ++ + P G+ P + GI+D + Sbjct: 9 IVDLETTGGHITRDRITEIG-ILLIDGERIER-YETLVNP-GQPIPPFIENMTGISDAMV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F+++ + Q +AHNA+FD GF+ E +R + S ++ T+ ++ Sbjct: 66 AEAPPFAALVETLLEKL--QGRLLLAHNARFDYGFLKNEFKRAGH--VFQSEVLCTVKLS 121 Query: 131 RRKHPSS-RNDLNSLCKRYGITIS--HRSKHGALLDSHLL 167 RR +P ++ L+SL R+GI ++ HR+ AL H + Sbjct: 122 RRLYPQHFKHSLDSLIARHGIVLADRHRAMADALAVYHFI 161 >gi|118473161|ref|YP_890494.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str. MC2 155] gi|118174448|gb|ABK75344.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str. MC2 155] Length = 337 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 11/162 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG RI+ + A+ + D + L P P +HG+T E L Sbjct: 26 VVDVETTGFRPGQARIVSVAALAVGDDGSVEHSMSSLLNPG---VDPGPTHVHGLTAEML 82 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 + +P F+ + E + + +AHNA FD F+ AE + + + P+D + + T+ + Sbjct: 83 EGQPCFADVVDELIEVLRGRT--LVAHNAGFDYSFLAAEAELVGAELPIDTA--MCTVEL 138 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ARR + N L +L +G+T H AL D+ +L+ + Sbjct: 139 ARRLELGTENLRLETLAAHWGVT--QMKPHDALDDALVLAQI 178 >gi|194333813|ref|YP_002015673.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM 271] gi|194311631|gb|ACF46026.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM 271] Length = 208 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 13/170 (7%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD 67 +V D ETTGL + DR IEIGAV L++ + FQ + P R +S EA GIT+ Sbjct: 11 VVLDFETTGLSPQYGDRAIEIGAV-LVEEGRIVDRFQKLMNPGFRISSFIEAYT--GITN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E LK + + ++F +F N +AHNA FD F++ EL+R N+ +L Sbjct: 68 EMLKGEACCEEVMAQFSEFIAGHNI--VAHNASFDKRFLDFELKRANRSY--EGVCCCSL 123 Query: 128 SIARRKHPSSRND-LNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175 ++RR + S N L +L G+ TI S H AL D+ + + +++ M+ Sbjct: 124 LVSRRIYQDSPNHKLQTLVSHAGVPTIG--SFHRALADAEMTAHLWLAMI 171 >gi|144900310|emb|CAM77174.1| DNA polymerase III, epsilon subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 459 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 8/173 (4%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63 +++ +V D ETTGLD+ D I+ +GAV S+ R + L N GR+ A +H Sbjct: 253 SQLPVVVLDTETTGLDAARDAIVSVGAVR-CHGSRIYRAAMLDLLVNPGRRIPARATAIH 311 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + KP ++ E ++ A + H FD+ + +R+ D P R Sbjct: 312 GIDESMVAGKPDLAASLPEIAAIMDK--AVVVGHQIGFDLALLRHGTERLGLDWTPPPR- 368 Query: 124 IDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +D L ++ P S ++++ R G+ IS R H AL D+ + ++++++++ Sbjct: 369 LDILLLSAALAPDESGHEIDDQAARMGVNISGR--HTALGDALVTAELWVRLI 419 >gi|119945580|ref|YP_943260.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] gi|119864184|gb|ABM03661.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] Length = 204 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD ETTGL K DR IEIGAV + + R FQ + P G + S GI+++ Sbjct: 8 VIFDFETTGLSPKMGDRPIEIGAVRIKNGLLVER-FQALMHP-GIRISSFIENFTGISNK 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + F DF N +AHNA FD F++AEL RI++ +I ++ Sbjct: 66 MLAEAKPCAEVMGRFCDFIGSDN--LVAHNASFDKRFLDAELHRISRG--YSGQISCSML 121 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +ARR + N L +L I + H AL DS + ++V++ M+ Sbjct: 122 LARRVLRDAPNHKLGTLVDYLNIQ-TEGVYHRALFDSEMTANVWLAMI 168 >gi|256043519|ref|ZP_05446446.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str. Rev.1] Length = 224 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 7/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172 + T+ ARR L+ + G+ HR HGAL D++L + +Y+ Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 174 >gi|166032846|ref|ZP_02235675.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC 27755] gi|166027203|gb|EDR45960.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC 27755] Length = 232 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 17/164 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FDIETTGL +++ IIEIGA+++ + +R F F+ P P +L GIT++ Sbjct: 6 VAFDIETTGLSPEHNEIIEIGALKVREGKVVDR-FIRFIEPEA-GIPPMITQLTGITNDM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDTL 127 ++ + + EF +F I HN +FD F+ + + + D + IDTL Sbjct: 64 VEGAGNCGEVLPEFLEFCERDT--LIGHNVQFDFSFVKTKAKELGYTYDHMG----IDTL 117 Query: 128 SIARRKH---PSSRNDLNSLCKRYGI--TISHRSKHGALLDSHL 166 IA+ H PS + L +LC+ Y I +HR+ H AL + L Sbjct: 118 KIAKVVHADLPSRK--LGALCEYYHIENVAAHRAYHDALATAKL 159 >gi|154487101|ref|ZP_02028508.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis L2-32] gi|154084964|gb|EDN84009.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis L2-32] Length = 256 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 11/172 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFL 70 D+ETTG +DRI+EIGA+ + + R Q+ N ++ PE + +L+G+TD L Sbjct: 89 IDLETTGFSPSDDRIVEIGAIRVRNGRPVKRYSQLI---NPQRPLPEEITRLNGLTDADL 145 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++P+ + +F F N I HN +FD F+ A R+ + ++ IDTL + Sbjct: 146 RNQPTVDQVLPDFIRFIG--NDTLIGHNINEFDAAFLLANTTRLGMRHIG-NKTIDTLPL 202 Query: 130 ARRKHP-SSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGG 178 R +P ++ L + +R+GI T SHR+ AL + + M G Sbjct: 203 DRALYPEEPKHRLVDIIRRFGIAQTESHRAADDALQTAQCYETMKAYMKANG 254 >gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815] gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815] Length = 392 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 21/172 (12%) Query: 10 IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVF D+ETTG + RI E+G VE+ ++ T L G+ P +L GIT++ Sbjct: 15 IVFVDLETTGGSVGDHRITEVGVVEVGPNGVSSWTT---LVDPGQPIPPFIQQLTGITND 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQR----INKDPLDPSRI 123 ++ P+F +I + D F + + +IAHNA FD GF+ +E QR N D + Sbjct: 72 MVRGAPTFEAIAA---DLFARLDGKLFIAHNASFDRGFLRSEFQRAGFAFNPD------V 122 Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + T+ ++R P+ R+ L++L +R+ + S R H AL D+ LL + ++ Sbjct: 123 LCTVRLSRALFPAEKRHGLDALVERHALMPSDR--HRALADADLLWQFWQRL 172 >gi|227872422|ref|ZP_03990766.1| possible DNA-directed DNA polymerase III alpha subunit [Oribacterium sinus F0268] gi|227841719|gb|EEJ52005.1| possible DNA-directed DNA polymerase III alpha subunit [Oribacterium sinus F0268] Length = 821 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG D + + IIEIGAV++ + +R VF+ P G +L I D Sbjct: 519 VVFDLETTGFDPRVNHIIEIGAVKIENGKIIDR-MDVFVNP-GVPIPFRITQLTSIDDSM 576 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D + +F DF ++A +AHNA FD F++ + + +N P +IDT+++ Sbjct: 577 VMDAKGIEEVLPQFLDF--AKDAILVAHNADFDYHFVSTKAKALNIPFSAP--VIDTVAL 632 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R P +R L+++ K I + H H A+ D+ + +Y+K + Sbjct: 633 SRLLLPRLNRFKLDTVAKELKIELLHH--HRAVDDAEATARIYLKEL 677 >gi|152990071|ref|YP_001355793.1| DNA polymerase III subunit epsilon [Nitratiruptor sp. SB155-2] gi|151421932|dbj|BAF69436.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2] Length = 276 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V DIET G + ++IEIGA++ + +R F+ F+ ++ PE + KL GI E Sbjct: 71 VVVDIETNGSKPEFSQVIEIGAIKFKGNTIIDR-FESFIYA---EDVPEYISKLTGILQE 126 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ PS + F +F Q+A ++AHN +FD FI+++L+++ + L +R + ++ Sbjct: 127 DLENAPSQKEVLLSFKEFL--QDAVFVAHNVRFDYNFISSKLEQLGLEKL-ANRKLCSID 183 Query: 129 IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKM 174 +AR+ S R L L + GI +SHR+ AL +L + K+ Sbjct: 184 LARKTIESERYGLEFLNETLGINTAVSHRAYADALTAYKILQMSFEKL 231 >gi|296129915|ref|YP_003637165.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM 20109] gi|296021730|gb|ADG74966.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM 20109] Length = 631 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 12/184 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + D I EIGAV++ FQ + P G P L GIT Sbjct: 65 VVVDLETTGGRAAEDAITEIGAVKVRGGEVLGE-FQTLVDPGG-PVPPFIQVLTGITTSM 122 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P+ + F +F + A +AHNA FDVGF+ A R + +++DT+ + Sbjct: 123 LVGAPTIGEVLPSFLEF--ARGAVLVAHNAPFDVGFLRAAAARSERA-WPGFQVVDTVRL 179 Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ARR + + + L++L +G T++ H AL D+ DV ++ G G Sbjct: 180 ARRVVLRDEAPNHKLSTLAALFGATVT--PNHRALADARATVDVLHALL--GRLAPLGVT 235 Query: 187 TNED 190 ED Sbjct: 236 HLED 239 >gi|154505436|ref|ZP_02042174.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149] gi|153794279|gb|EDN76699.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149] Length = 219 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG+ + D IIEI AV++ TF + P GR +A K++GITD+ + Sbjct: 17 VFDLETTGISANMDDIIEISAVKVKG-GIVQDTFSTLVNP-GRHIPAQATKVNGITDQMV 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P +EF F E + HN + FD+ FI E++ + ++ + + IDTL + Sbjct: 75 SEAPLIREAMTEFLRFVGEDI--LVGHNIQSFDMKFIYREVEELFQETVS-NDFIDTLYM 131 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 AR+ P ++ L L + +G IS + H AL D + + +M Sbjct: 132 ARKCLPELKHHRLTDLAEHFG--ISSKGAHRALNDCVMNQKCFEEM 175 >gi|28210814|ref|NP_781758.1| DNA polymerase III subunit epsilon [Clostridium tetani E88] gi|28203252|gb|AAO35695.1| DNA polymerase III alpha subunit [Clostridium tetani E88] Length = 380 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 9/164 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 +V D+ETTGL D+IIEI A++ Y + N + N P+ A +++ IT+ Sbjct: 85 VVIDLETTGLYPVTDKIIEITAIK---YKSGQIVEKYNTLINPKINIPKRATEINNITNN 141 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + E F E +AHNA FD+ F+NA L IN++ + + IDTL Sbjct: 142 MVKDSPVIEDVLPELLKFIKEY--PLVAHNASFDIKFLNANLALINREIKNVA--IDTLQ 197 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++R + N + K + + IS + H AL D +++Y+ Sbjct: 198 LSRAMYTFLPNHKLTTIKEH-LCISEDNSHRALPDCITTAEIYL 240 >gi|291561902|emb|CBL40706.1| exonuclease, DNA polymerase III, epsilon subunit family [butyrate-producing bacterium SS3/4] Length = 247 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG+ +++++I EIG V+++D +T T+ + P+ R+ ++L GITD+ Sbjct: 10 VALDLETTGIGARHEKITEIGMVKVID-GETTDTYHTMVNPH-REIPKRIVELTGITDDM 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P I E F ++ + H FD GF+ +N+ +DTL + Sbjct: 68 VKDAPGIEEILDEVLAF--TEDLPLLGHQIIFDYGFLVQ--AAVNQKRKFEKYGVDTLKL 123 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R P + +L++ C + +T + H AL D++ ++Y Sbjct: 124 CRYLMPGEEKKNLSAACAYFEVT--QDTAHRALSDAYAAHNLY 164 >gi|323496243|ref|ZP_08101301.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326] gi|323318520|gb|EGA71473.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326] Length = 204 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L++ + TFQ + P G + S GIT++ Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKLVNGEVVD-TFQQLMNP-GFRVSAFIEGYTGITNQ 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L PS + +EF DF +N +AHNA FD F++ EL+R+ +L Sbjct: 66 MLSGAPSCDEVMTEFADFIRGEN--LVAHNASFDKRFLDDELERVKVAY--RGEFACSLL 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+RR H + + RY + H AL D+ + + +++ M+ Sbjct: 122 ISRRLHQDAPSHKLGDIVRYKHIENDGVFHRALADAQVTAKLWMVMV 168 >gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893] gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893] Length = 483 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 85/155 (54%), Gaps = 13/155 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIETTG + +DRI EIG + +Q + P R SP L GIT++ + Sbjct: 16 LDIETTGGNPSHDRITEIG-IRFWRAGAVVGEWQTLVNPETRI-SPFIESLTGITNDMVA 73 Query: 72 DKPSFSSIFSEFWDFFNEQ--NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 D P +F + + +Q + ++AHNA+FD GFI AE +R+ L ++++ T+ + Sbjct: 74 DAP----VFEDIAEVLEKQLKDTIFVAHNARFDYGFIKAEFRRLGL--LFSAKVLCTVKL 127 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163 +R+ +P R+++++L +R+G+ R H AL D Sbjct: 128 SRKLYPGFRRHNMDALIERHGLEQVQR--HRALGD 160 >gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644] gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644] Length = 1448 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTGL ++ +++IE+ AV++ D K F+ F+ P G S + L ITD Sbjct: 429 VVFDTETTGLSAQYNKVIELAAVKMKDGEKIGE-FEEFIDP-GHPLSQTTINLTHITDAM 486 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + +F F +F + + HNA FDV F+N R + P +DTL + Sbjct: 487 VRGSKTEEEVFKLFREFC--KGCIIVGHNATFDVDFMNTGYLR-HGMPEIKEPWVDTLPL 543 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 AR + R L++L KR + + H H A+ D+ ++ KM+ Sbjct: 544 ARILYSDMKRFTLDTLAKRLKVDLEHH--HRAIYDAEATGYIFYKMLA 589 >gi|237654602|ref|YP_002890916.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237625849|gb|ACR02539.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 502 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 12/164 (7%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 DIETTG ++ + I EIG V++ + R + + P R PE + +L GI D+ + Sbjct: 16 DIETTGGPAQRESITEIGIVQVDE--DGVREWSTLVRPASR--IPETIQRLTGIDDDMVA 71 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 D P F I E +D + + ++AHNA+FD G + A +R D + P +++ T+ ++R Sbjct: 72 DAPRFEDIADEVFDRLDGRL--FVAHNARFDHGHLRAAFRRAGLD-MRP-QVLCTVKLSR 127 Query: 132 RKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R P R+ L+ L +R+G+ ++ R H AL D+ LL + K+ Sbjct: 128 RLFPDHRRHGLDHLIERHGLAVADR--HRALGDARLLWQFWQKI 169 >gi|157375547|ref|YP_001474147.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157317921|gb|ABV37019.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 208 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL ++ DR IEIGAV+L D + TFQ + P G + S GIT+ Sbjct: 10 IVLDFETTGLSPNQGDRAIEIGAVKLQDGIVVD-TFQELMNP-GFRVSGFIEGYTGITNA 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + + ++F F N +AHNA FD F++AEL I + ++ Sbjct: 68 MLNSAPPCNEVMAQFAGFIGNDN--LVAHNASFDKRFLDAELDGIGRTY--GGEFACSML 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR + ++ N Y + H AL DS + + +++KM+ Sbjct: 124 IARRLYQAAPNHKLGGLVEYKQIENDGVFHRALADSEVTAKLWLKML 170 >gi|311741608|ref|ZP_07715431.1| epsilon subunit family exonuclease [Corynebacterium pseudogenitalium ATCC 33035] gi|311303272|gb|EFQ79352.1| epsilon subunit family exonuclease [Corynebacterium pseudogenitalium ATCC 33035] Length = 221 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 13/159 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLHGITDE 68 V D ETTG + + DRIIE+ AV + ++ L P+G+ KNS +HGIT++ Sbjct: 23 VIDTETTGFNKRYDRIIELAAVRADSHFNPIDSWHTLLNPDGKAIKNS----HIHGITND 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR---IID 125 + P+FS ++ +F + + + AHNA FD I AE+ R+ D ID Sbjct: 79 MVVTAPTFSEVYGDFTSYID--GMQLFAHNAPFDSKMIVAEVDRMTGGDNDGDEFFPFID 136 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 T+ +A++ +L +L R G + + H A+ D+ Sbjct: 137 TIDLAKQMLDCGPYNLPALLDRLG--LDNPDAHAAVADA 173 >gi|126174568|ref|YP_001050717.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155] gi|125997773|gb|ABN61848.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155] Length = 208 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 12/197 (6%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL ++ DR IEIGAV + D T R F + P G + S GI+++ Sbjct: 10 VVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFIEDYTGISNQ 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D + + + F DF + N +AHNA FD F++AE +I L + +L Sbjct: 68 MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL--GQFGCSLL 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +ARR + ++ N RY + + H AL D+ + +++ M+ Q FG + Sbjct: 124 VARRLYQAAPNHQLGTLVRYKQLPTDGTFHRALADAEMTGHLWLAMLADLQQ-EFGLCSP 182 Query: 189 E----DRFFKEEKKTVP 201 + K+ K VP Sbjct: 183 TFELLQKLAKKTKAEVP 199 >gi|301167913|emb|CBW27498.1| putative DNA polymerase III PolC-type [Bacteriovorax marinus SJ] Length = 438 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 15/185 (8%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLH 63 N + VFD+ETTG + K+D+IIEIG V++ ++ ++ + P + PE + KL Sbjct: 9 NNLEFCVFDLETTGGNHKSDKIIEIGLVKIKNFEVIDQK-NYLIQPEIK--IPEFIQKLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I +E +KD P + E F + + +AHN FDV F N+ L+R+ K L + Sbjct: 66 SIKEEDVKDSPVIEDVIDEILKFMGD--SILVAHNTSFDVPFFNSVLKRLGKPQLKNKSL 123 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMV--G 177 L + + P+ N +LN + K +G I H+ H AL D+ ++ +Y+K+ + G Sbjct: 124 CTNL-MTKYLIPNLMNSNLNYMSKIFG--IKHKKAHRALDDALATAELLLIYLKIYIDKG 180 Query: 178 GSQIN 182 ++IN Sbjct: 181 ITKIN 185 >gi|170016990|ref|YP_001727909.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20] gi|169803847|gb|ACA82465.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc citreum KM20] Length = 1437 Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL + D+IIE+ AV++ + ++ F ++ P G S +L ITD Sbjct: 420 VAFDLETTGLSAVTDKIIELSAVKMQMGNVIDK-FSEYINP-GFPLSDFTTELTSITDAM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + + SI S F + ++A + HN FD+GF+NA R N+ P + IIDTL Sbjct: 478 VANADTEESIVSRFRAWV--RDAILVGHNVTFDIGFMNAAYSRYNQ-PDISNPIIDTLPF 534 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 R +P ++ L ++ KR+ I + H A+ DS Sbjct: 535 TRWLYPDYKSYRLGTIAKRFNINLEQ--AHRAIFDS 568 >gi|86137282|ref|ZP_01055859.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. MED193] gi|85825617|gb|EAQ45815.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. MED193] Length = 484 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 9/174 (5%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N++ VFD ETTGL D I++IGAV +L+ L GR + ++HG Sbjct: 273 NQLCFAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVHG 332 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSR 122 ++ ++ P + +EF F +A +AHNA FD+ F+ +A+ + D Sbjct: 333 VSTAMVQGAPDIAEAAAEFHLF--ATDAVIVAHNAPFDMAFLRRHAKASGLAWD----HP 386 Query: 123 IIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+DT+ ++ +S + L++LC+R ITI +H AL D+ + ++M+ Sbjct: 387 ILDTVLLSAVLFGASVPHTLDALCERLDITIPPALRHTALGDAQATACALVQMI 440 >gi|325983091|ref|YP_004295493.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] gi|325532610|gb|ADZ27331.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] Length = 463 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 85/160 (53%), Gaps = 9/160 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTG+ DRI EIG + + +T R + + P G P +L GIT + Sbjct: 9 VLLDLETTGVTPTQDRITEIGLIRYENGVETGR-WNTLINP-GINIPPFIQRLTGITQDM 66 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+FS ++ + ++ A AHNA+FD GF+ E +RI +++ T+ + Sbjct: 67 VDHAPTFSQVYETLLQWLDQ--AVLCAHNARFDYGFLKNEFKRIGVT--FQKKLLCTVKL 122 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLS 168 +R+ +P + LN++ +R+ + R H A+ D+ +++ Sbjct: 123 SRKLYPQHHSHSLNAIIERFRLICDQR--HRAMGDTEMIA 160 >gi|257094042|ref|YP_003167683.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046566|gb|ACV35754.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 484 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 92/167 (55%), Gaps = 10/167 (5%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VF D+ET+G + +DR+IE+G VE+ + R + V + P SP +L GI Sbjct: 9 LEPLVFVDLETSGANFASDRVIEVGLVEV--DADGVREWSVLVNPEA-PISPFITRLTGI 65 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D + P+F + + +AHNA+FD GF+ E +R+ + P+ + Sbjct: 66 DDAMVGSAPTFRQLAPT--LLDRLRGRLLVAHNARFDYGFLQCEFKRLGVEFRTPT--LC 121 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 T+ ++R+ P R++L++L R+G+ ++ ++H AL D+ +L +++ Sbjct: 122 TVKLSRKLFPEHHRHNLDALVTRHGLKVAG-NRHRALADARILWELW 167 >gi|223040436|ref|ZP_03610710.1| mature parasite-infected erythrocyte surface antigen [Campylobacter rectus RM3267] gi|222878286|gb|EEF13393.1| mature parasite-infected erythrocyte surface antigen [Campylobacter rectus RM3267] Length = 289 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDEF 69 V DIET+G + +IIEIGA++L + + F+ F+ P +N E L GIT E Sbjct: 75 VVDIETSG-GINSGQIIEIGALKLQNGEIIGK-FETFVHAPYVPENISE---LTGITAEH 129 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LK+ P+ + + +F F + + ++AHN +FD GFI A L+ + L R+ T+ + Sbjct: 130 LKNAPNLAFVMEKFKVFLGQ--SVFVAHNVRFDYGFIGATLEALGYGELLNHRLC-TIDL 186 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ARR S + L +L + GI +H H AL D+ ++++ Sbjct: 187 ARRTIASPKYGLGTLKEILGINNAH---HRALSDAIAAAEIF 225 >gi|153000864|ref|YP_001366545.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185] gi|160875572|ref|YP_001554888.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195] gi|151365482|gb|ABS08482.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185] gi|160861094|gb|ABX49628.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195] gi|315267759|gb|ADT94612.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678] Length = 208 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 12/197 (6%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL ++ DR IEIGAV + D T R F + P G + S GI+++ Sbjct: 10 VVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFIEDYTGISNQ 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D + + + F DF + N +AHNA FD F++AE +I L + +L Sbjct: 68 MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL--GQFGCSLL 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +ARR + ++ N RY + + H AL D+ + +++ M+ Q FG + Sbjct: 124 VARRLYQAAPNHQLGTLVRYKQLPTDGTFHRALADAEMTGHLWLAMLADLQQ-EFGLCSP 182 Query: 189 E----DRFFKEEKKTVP 201 + K+ K VP Sbjct: 183 TFELLQKLAKKTKAEVP 199 >gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1] gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum Rt17-B1] Length = 1390 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL+ ++D I+EIGAV+ D K F F+ PN K + ++L + GIT++ Sbjct: 384 VVLDLETTGLNPRSDEIMEIGAVKTRD-GKVIDEFHTFVRPN--KLNKKSLNITGITEDM 440 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LKD P + + +F +++ +AHNA FD+ F+ L + + P IDTL + Sbjct: 441 LKDAPDIMQVLPKLLEFI--KDSILVAHNADFDMTFLKNILSKSGIEFNPP--YIDTLRL 496 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ ++ L+ L +G+ H AL D+ + +V+ K++ Sbjct: 497 SQALLRNKIKSFSLDKLVDHFGLGAFQH--HRALDDARVTVNVFWKLI 542 >gi|284048335|ref|YP_003398674.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM 20731] gi|283952556|gb|ADB47359.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM 20731] Length = 223 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 11/170 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP----NGRKNSPEALKLHGI 65 +V D+ETTGLD + D+IIEIGA+E + K RTF L P G+ SP +L GI Sbjct: 26 VVVDLETTGLDPERDQIIEIGALE-VTAGKRGRTFSTLLQPRTPLEGQYVSPFITRLTGI 84 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+E L P F F + A + +N FD+GF+ + Q PL + +D Sbjct: 85 TNEMLAAAPQPRQALEAFGKFLGSRVA--VGYNVGFDMGFLQQQFQDQLYRPL-ANDWVD 141 Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L +A+ P + LN+L Y + ++ H AL D + K+ Sbjct: 142 VLPMAQTLFPLWDHHRLNNLAAWY--HVENKEAHRALSDVETTETCFRKL 189 >gi|315446380|ref|YP_004079259.1| DNA polymerase III subunit epsilon [Mycobacterium sp. Spyr1] gi|315264683|gb|ADU01425.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. Spyr1] Length = 333 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 11/168 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RI+ + A+ L D ++ L P P +HG+T E L Sbjct: 22 VVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAEML 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 + +P+F + + + + +AHN FD F++AE + + + P+D ++ T+ + Sbjct: 79 EGQPTFGDVVGDLCEVLRGRT--LVAHNVGFDYSFLSAEAELVGAELPID--TVMCTVEL 134 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ARR N L +L +G+T H AL D+ +L+ + ++V Sbjct: 135 ARRLDLGLENLRLETLAAHWGVT--QMRPHDALDDAMVLAQILKPVLV 180 >gi|291279025|ref|YP_003495860.1| hypothetical protein DEFDS_0623 [Deferribacter desulfuricans SSM1] gi|290753727|dbj|BAI80104.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 247 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 105/191 (54%), Gaps = 17/191 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTGLD + ++I I AV+++++ K + VF+ P E++K HGITD+ + Sbjct: 65 VIDTETTGLDFETAKLINIAAVKVVNF-KILDIYDVFINPE-IPIPEESIKWHGITDDMV 122 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KDKP+ + I +F F +++ + H+ FD+ IN +L+ + + IDT+ + Sbjct: 123 KDKPTVAEILPDFLKFI--RDSVIVGHHVNFDLKMINKDLKLYYGSEI-KNIWIDTMFL- 178 Query: 131 RRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 K+ R+D L+ L +++ + R H AL D+ ++V+ K++V ++ GFKT Sbjct: 179 YSKNILCRDDHISLDFLLEKFNVKCIGR--HTALGDALATAEVFNKIVV---KMKNGFKT 233 Query: 188 NEDRF---FKE 195 D + FKE Sbjct: 234 VSDLYRSQFKE 244 >gi|126665661|ref|ZP_01736642.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17] gi|126629595|gb|EBA00212.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17] Length = 483 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 79/147 (53%), Gaps = 7/147 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ETTG DRI EIG ++ + +Q + P R SP +L GI++ + Sbjct: 16 LDLETTGGSVATDRITEIG-IQFWRAGECVGQWQTLVNPKTRI-SPFIEQLTGISNAMVA 73 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 D P F I E + ++AHNA+FD GF+ E +R+ + + ++++ T+ ++R Sbjct: 74 DAPLFEDIADELEQRLD--GVVFVAHNARFDYGFVKGEFRRLGR--MFVAKVLCTVKLSR 129 Query: 132 RKHPS-SRNDLNSLCKRYGITISHRSK 157 R +P R+++++L +R+G+ R + Sbjct: 130 RLYPEFRRHNMDALIERHGLQQVQRHR 156 >gi|269968192|ref|ZP_06182223.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B] gi|269827190|gb|EEZ81493.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B] Length = 204 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 13/172 (7%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L++ + +FQ + P G + S IT+ Sbjct: 8 VVLDFETTGLSPTLGDRAIEIGAVKLVNGEVVD-SFQQLMNP-GFRVSSFIENYTSITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ PS + + F +F +N +AHNA FD F++AEL+RIN +L Sbjct: 66 MLRSAPSCEEVMASFSEFIAGEN--LVAHNASFDKRFLDAELERINCG--SSGEFACSLL 121 Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +ARR + PS + L L RY + H AL D+ + + +++ M+ G Sbjct: 122 VARRLIQEAPSHK--LGELV-RYKNIDNDGVFHRALADAQMTAKLWLLMVEG 170 >gi|312883799|ref|ZP_07743518.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC BAA-2122] gi|309368548|gb|EFP96081.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC BAA-2122] Length = 204 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 25/176 (14%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L+D + +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKLVD-GQVVDSFQRLMNP-GFRVSTFIEGYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ PS + + F F +N IAHNA FD F++AEL+R+N +L Sbjct: 66 MLRTAPSCDEVMTSFSQFIAGEN--LIAHNASFDKRFLDAELERVNCGY--SGEFACSLL 121 Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSK------HGALLDSHLLSDVYIKMM 175 +ARR PS + G + HR+ H AL D+ + + +++ M+ Sbjct: 122 VARRLIQDAPS---------HKLGELVRHRNIENDGVFHRALADAQVTAKLWLLMV 168 >gi|328544128|ref|YP_004304237.1| DNA polymerase III, epsilon subunit [polymorphum gilvum SL003B-26A1] gi|326413871|gb|ADZ70934.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum SL003B-26A1] Length = 719 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 20/179 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPE-ALKLHGITD 67 +V D ETTGLD ++DRI++IGAV + F+V + P PE A ++HG+ D Sbjct: 21 VVLDTETTGLDVRHDRIVQIGAVRMHGAEIDETAVFEVTVDPG--IPIPEVASRIHGLAD 78 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSRII 124 + KP +++ + F +A + H+ FD+ + E +R + K+P R + Sbjct: 79 ADVAGKPGLAAVMPDLVAFIG--DAVVVGHSIHFDMAVLRHEAERHGFVWKEP----RAL 132 Query: 125 D-TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI----KMMVGG 178 D L A L+SL G+TI+ R H AL D+ + VY K++VGG Sbjct: 133 DVALMAAGLDRELVDTSLDSLALGLGVTITGR--HTALGDALATARVYAALQPKLLVGG 189 >gi|145221884|ref|YP_001132562.1| DNA polymerase III subunit epsilon [Mycobacterium gilvum PYR-GCK] gi|145214370|gb|ABP43774.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK] Length = 345 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 11/168 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RI+ + A+ L D ++ L P P +HG+T E L Sbjct: 34 VVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAEML 90 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 + +P+F + + + + +AHN FD F++AE + + + P+D ++ T+ + Sbjct: 91 EGQPTFGDVVGDLCEVLRGRT--LVAHNVGFDYSFLSAEAELVGAELPID--TVMCTVEL 146 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ARR N L +L +G+T H AL D+ +L+ + ++V Sbjct: 147 ARRLDLGLENLRLETLAAHWGVT--QMRPHDALDDAMVLAQILKPVLV 192 >gi|318060238|ref|ZP_07978961.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] gi|318076974|ref|ZP_07984306.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] Length = 647 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 9/162 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ET+GL ++ DR++ + V + + F + P P + +HG+T E L Sbjct: 18 LVDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDPG---CDPGPVDVHGLTRERL 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P+F I Q+ +AHNA+FD F+ E R L +R + TL++ Sbjct: 75 SGAPAFGQIAGRLGAML--QDRVLVAHNAQFDYDFLAHEFARARLY-LPVTRRLCTLALN 131 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ P +R+ L SL YG+ + H AL D+ +L+ ++ Sbjct: 132 RQVDPPTRDMKLGSLAAHYGVPRTR--AHDALDDTRVLAGIF 171 >gi|306845957|ref|ZP_07478524.1| DNA polymerase III, epsilon chain [Brucella sp. BO1] gi|306273592|gb|EFM55437.1| DNA polymerase III, epsilon chain [Brucella sp. BO1] Length = 235 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 5/171 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGDELLTQSLYLIFDPR-KDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 IHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDIHYIQREFRKAEVDMLD-Q 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + T+ ARR L+ + G+ + +HGAL D++L + +Y+ Sbjct: 125 PVYCTMEGARRLWRGDSAKLDHCLAKIGLARTG-YRHGALEDAYLTAGLYL 174 >gi|284931104|gb|ADC31042.1| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma gallisepticum str. F] Length = 1494 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 14/189 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVF-------LCPNGR 53 ++ +K+ ++FDIETTGL++ ++IIEI AV + + ++TN + L N + Sbjct: 403 LKLDKLSFVIFDIETTGLNAYYEQIIEIAAVRVKAELNETNHQLEFVQLGKFEKLIKNEK 462 Query: 54 KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQR 112 S +L G+ D LKD ++ EF +F + + +AHN FD +IN +L + Sbjct: 463 PLSKFTTQLTGLKDSDLKDAQDEKTVLEEFANFIQKDDV-LVAHNGIDFDFIWINTKLDK 521 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 PLD + ++D+L +A + + R L +L + G H A D+ LL+ Sbjct: 522 YKLKPLD-NPMLDSLRLAYQLYQFKRYTLENLSLKLGYEYDKTLAHRANYDTELLAKC-- 578 Query: 173 KMMVGGSQI 181 +M+ SQI Sbjct: 579 -LMIMLSQI 586 >gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM 44385] gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM 44385] Length = 616 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 5/122 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + DRIIEIGAV++ + +R F F+ P GR P + GI+D+ Sbjct: 35 VVVDLETTGLSAHEDRIIEIGAVKIHGGEEISR-FSTFVDP-GRLIPPLITNITGISDDD 92 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + +F +F + +AHNA+FD+GF+ A R + P+ + TL + Sbjct: 93 VNGAPKEAQAVKDFLEF--ARGTVLVAHNARFDIGFLQAASMRAHITWPQPTHLC-TLVL 149 Query: 130 AR 131 AR Sbjct: 150 AR 151 >gi|148973897|ref|ZP_01811430.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3] gi|145965594|gb|EDK30842.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3] Length = 213 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 14/206 (6%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL + DR IEIGAV+L++ + TFQ + P G + S GIT+ Sbjct: 10 IVLDFETTGLSPNMGDRAIEIGAVKLVNGEVVD-TFQQLMNP-GFRVSGFIEGYTGITNR 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L S + EF DF Q+++ +AHNA FD F++AEL I +D + ++ Sbjct: 68 MLSTAASCGEVMDEFADFI--QDSQLVAHNASFDKRFLDAELDYIGRDY--NGQFACSML 123 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 IARR + + L L R+ + + H AL DS + + +++ +M+ Q + G Sbjct: 124 IARRLIQDAPTHKLGDLV-RFKSIDNDGTFHRALADSEMTARLWL-LMIDELQSDHGIHQ 181 Query: 188 NE----DRFFKEEKKTVPNISLLKRD 209 + K K +P + + RD Sbjct: 182 PSFQLMQKISKTAKGAIPKLLMSSRD 207 >gi|291540867|emb|CBL13978.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis XB6B4] Length = 235 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 11/164 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D+E TGL++K D I+E+GAV + ++ ++ F LC N + PE + +L GIT+ Sbjct: 5 VVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDK-FGAILCQNVK--IPEKVTELTGITEA 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +F++F E + N FD GF+ N PL+ +DTL Sbjct: 62 MVQGGMEKEEAMRQFFEFIGEDII--VGQNVIFDYGFLKQWAVNHNM-PLE-RNAVDTLK 117 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +AR+ P + DL SLC +G + + H A D++ VY Sbjct: 118 LARKFLPKEQKKDLESLCACFG--VKRENAHRAFDDAYETWQVY 159 >gi|167854538|ref|ZP_02477319.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Haemophilus parasuis 29755] gi|219872178|ref|YP_002476553.1| ribonuclease T [Haemophilus parasuis SH0165] gi|167854293|gb|EDS25526.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Haemophilus parasuis 29755] gi|219692382|gb|ACL33605.1| ribonuclease T [Haemophilus parasuis SH0165] Length = 216 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 20/190 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN- 55 KN+ R +V D+ET GL+++ D ++EI A+ L +D Y + F + P N Sbjct: 13 KNRFRGYLPVVVDVETGGLNAQTDALLEIAAITLKMDDDGYLHLDEKFHRHVKPFENANI 72 Query: 56 SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107 +PEALK++GI D + +E + + Q A +AHNA FD F+ Sbjct: 73 NPEALKVNGIDVDNAERGAVPEDIAITEMFKMVRKAVKDNGCQRAVIVAHNATFDQAFLQ 132 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A ++RIN +DP P + DT ++A + + L C+ I + H AL D+ Sbjct: 133 AAVKRINTKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAQIPFDGKQAHSALYDTE 190 Query: 166 LLSDVYIKMM 175 ++++ M+ Sbjct: 191 RTAELFCAMV 200 >gi|326791606|ref|YP_004309427.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427] gi|326542370|gb|ADZ84229.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM 5427] Length = 1468 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 15/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTG K +RIIEIGAV+++ + TF F+ P + P + KL GI D Sbjct: 443 VVFDLETTGFSPKMNRIIEIGAVKVVG-GQIVDTFSEFVNP--KVPIPYQIEKLTGINDR 499 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDT 126 + + + + +F F + +AHNA FD+ FI NA+ Q + D ++DT Sbjct: 500 MVMEAETIEVLLPQFLAFC--EGCVMVAHNADFDMSFIEANAKEQGLAAD----FTVMDT 553 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++AR P N LN++ K + IS + H A+ D+ +++++ + Sbjct: 554 VALARILMPHLGNFKLNNVAKH--LDISLENHHRAVDDATATGEIFVRFI 601 >gi|167041229|gb|ABZ05986.1| putative exonuclease [uncultured marine microorganism HF4000_001N02] Length = 299 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 7/148 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGIT 66 R + FD+ETTGLD++ DRI++ + D ++ + P R+ P A ++HGI+ Sbjct: 38 RVLGFDLETTGLDARKDRIVQYALIGS-DVDGSHINLASLVDP--RRGIPTAASRIHGIS 94 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIID 125 +E ++ SF + + ++A + HN + FD F+ E R + P I+D Sbjct: 95 EEDVRGVGSFETHVGAISELI--EDAVIVGHNISNFDWRFLELECMRAGVETPIPRAIVD 152 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITIS 153 T S+AR+ R L LC RY I+I Sbjct: 153 TYSLARKLRIPGRRTLGVLCARYDISIG 180 >gi|34496475|ref|NP_900690.1| DNA-directed DNA polymerase III subunit epsilon [Chromobacterium violaceum ATCC 12472] gi|34102328|gb|AAQ58694.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Chromobacterium violaceum ATCC 12472] Length = 481 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 10/155 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTG + DRI E+G V L+D + R +L G+ P + GI++E + Sbjct: 8 IIDLETTGGNIARDRITEVGMV-LIDGERVERL--SWLVNPGQPIPPFIENMTGISNEMV 64 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P FS+ E D Q +AHNA+FD GF+ E +R +R + T+ ++ Sbjct: 65 AGAPPFSAQADELLDRL--QGRLLLAHNARFDYGFLKNEFRRHGLR--FQARALCTVKLS 120 Query: 131 RRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDS 164 RR +P ++ L+SL R+GI + R H AL D+ Sbjct: 121 RRLYPQHFKHSLDSLIARHGIDMPER--HRALADA 153 >gi|291535622|emb|CBL08734.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis M50/1] Length = 235 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 11/164 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D+E TGL++K D I+E+GAV + ++ ++ F LC N + PE + +L GIT+ Sbjct: 5 VVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDK-FGAILCQNVK--IPEKVTELTGITEA 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +F++F E + N FD GF+ N PL+ +DTL Sbjct: 62 MVQGGMEKEEAMRQFFEFIGEDII--VGQNVIFDYGFLKQWAVNHNM-PLE-RNAVDTLK 117 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +AR+ P + DL SLC +G + + H A D++ VY Sbjct: 118 LARKFLPKEQKKDLESLCACFG--VKRENAHRAFDDAYETWQVY 159 >gi|193212860|ref|YP_001998813.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327] gi|193086337|gb|ACF11613.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB 8327] Length = 208 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 9/177 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M R + +V D ETTGL + DR IEIGAV L + +R FQ + P G + SP Sbjct: 1 MQRASADSVVVLDFETTGLSPQYGDRAIEIGAVLLENGVIVDR-FQRLMNP-GFRISPFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+E LK +P + + F DF N +AHNA FD F++ EL+R + Sbjct: 59 ESYTGITNEMLKVEPPCEEVMAGFSDFIAGHNI--VAHNASFDRRFLDFELKRARRAY-- 114 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +L ++RR + + N L +L GI S H AL D+ + + +++ M+ Sbjct: 115 EGDCCCSLLLSRRIYQDAPNHKLQTLVNHAGIP-KVGSFHRALADAEMTAHLWLSMI 170 >gi|254482913|ref|ZP_05096149.1| exonuclease, DNA polymerase III, epsilon subunit family [marine gamma proteobacterium HTCC2148] gi|214036785|gb|EEB77456.1| exonuclease, DNA polymerase III, epsilon subunit family [marine gamma proteobacterium HTCC2148] Length = 206 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV + + K FQ + P GR+ GIT+ Sbjct: 8 VVLDFETTGLSPGEGDRAIEIGAVRI-ESGKVTARFQELMNP-GRRVDSFIESFTGITNL 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D S + +F DF E N +AHNA FD F++AEL+RI L + Sbjct: 66 MLADARPCSDVMRDFADFIGEDN--LVAHNASFDKRFLDAELERI---ALSYTGQFSCSM 120 Query: 129 IARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A R+ + + L +L + I + H AL DS + + +++ M+ Sbjct: 121 LAARRIFQQAPDHKLGTLVEFMNIPVEG-VFHRALYDSEMTAKLWLAML 168 >gi|261493343|ref|ZP_05989869.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310987|gb|EEY12164.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 221 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 94/192 (48%), Gaps = 20/192 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGR 53 + KN+ R +V D+ET GL+++ D ++E+ A+ + +D Y ++ + P G Sbjct: 20 LLKNRFRGYLPVVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGA 79 Query: 54 KNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGF 105 +PE+LK +GI D L+ + + E + Q A +AHNA FD GF Sbjct: 80 NINPESLKFNGIDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQGF 139 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A ++RIN +DP P + DT ++A + + L C+ I+ H AL D Sbjct: 140 LQAAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQAAQISFDGHQAHCALYD 197 Query: 164 SHLLSDVYIKMM 175 + ++++ M+ Sbjct: 198 TEKTTELFCAMV 209 >gi|167570838|ref|ZP_02363712.1| possible DNA polymerase/helicase [Burkholderia oklahomensis C6786] Length = 408 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 22/169 (13%) Query: 13 DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFL 70 D+ETTG + RI EIG V + D+ T T N R+ P ++ L GITD+ + Sbjct: 19 DLETTGGSAVEHRITEIGVVVVSADHVSTWTTLV-----NPRQAIPPFIQQLTGITDDMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIIDT 126 + P+F+ + S ++ + + ++AHNA FD GF+ AE +R N D ++ T Sbjct: 74 RGAPTFADVASALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLCT 125 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++R P SR+ L++L R+ +T S ++H AL D+ L+ + K+ Sbjct: 126 VRLSRVLFPRESRHGLDALIARHALTPS--ARHRALADADLIWQFWQKL 172 >gi|261323134|ref|ZP_05962331.1| DNA polymerase III [Brucella neotomae 5K33] gi|261299114|gb|EEY02611.1| DNA polymerase III [Brucella neotomae 5K33] Length = 233 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 7/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 18 IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 76 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172 T+ ARR L+ + G+ HR HGAL D++L + +Y+ Sbjct: 134 PFYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 183 >gi|298369304|ref|ZP_06980622.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sp. oral taxon 014 str. F0314] gi|298283307|gb|EFI24794.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sp. oral taxon 014 str. F0314] Length = 463 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 12/168 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69 V D+E+TG + DRI E+ + + + V N ++ P+ + L GITDE Sbjct: 23 VVDLESTGGNFYRDRITEVAVLRFERGAAKRYEWLV----NPQQPIPKFVADLTGITDEA 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P FS I ++ + A +AHN++FD F+ E +R D P+ + T+ + Sbjct: 79 VSGAPVFSDIAADLLPLLH--GAVVVAHNSRFDYTFLRHEFRRAGMDFAAPA--LCTVQL 134 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +RR +P R++L+S+ +R+GI + S+H A+ D LSD + +V Sbjct: 135 SRRLYPQFYRHNLDSIIERFGIAVE--SRHRAMADVAALSDFLERSLV 180 >gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448] gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448] Length = 1469 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 94/174 (54%), Gaps = 17/174 (9%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +K++ ++FD+ETTGL + + IIE GAV L + + + Q F+ P G K P K+ G Sbjct: 407 DKLKFVIFDLETTGLSAFYNEIIEFGAVVLQNGIEIEKH-QFFIKPTG-KIPPAITKITG 464 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNE------QNAEWIAHNAKFDVGFINAELQRINKDPL 118 I+ + + D+ + S W+ E +++ +AHNA FD F+ ++ K L Sbjct: 465 ISQKMI-DETAIS------WEIALEKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSL 517 Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + IIDTL ++R +P+ ++ L ++ KRY I + H A D+ +L+ ++ Sbjct: 518 K-NPIIDTLEVSRFLNPNEKSHSLKNVAKRYEIEYAEEIAHRADYDAKILTTIW 570 >gi|302880064|ref|YP_003848628.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] gi|302582853|gb|ADL56864.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] Length = 204 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ + DR E+ V + D K + +Q + G P L GI++E Sbjct: 6 VIDFETTGMSPELGDRATEVAVVIVSD-GKISSRYQSLMN-TGAYIPPFIEDLTGISNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P + + E DF A W+AHNA FD F++AE R+ ++ + Sbjct: 64 IRQAPPAAQVMKELADFVGA--APWVAHNASFDSRFLDAEWSRMGHR--REQAFACSMLL 119 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR +P S N L +L + G+ + R H AL D+ + + ++++M+ Sbjct: 120 ARRLYPDSPNHKLGTLVRFLGLPDTAR-HHRALADAEMTAHLWLRMV 165 >gi|283796625|ref|ZP_06345778.1| DNA polymerase III PolC-type [Clostridium sp. M62/1] gi|291076048|gb|EFE13412.1| DNA polymerase III PolC-type [Clostridium sp. M62/1] Length = 251 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 99/219 (45%), Gaps = 31/219 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTGLD K D+IIE+GA L++ K R + P+ R+ S L GIT + Sbjct: 20 AIDLETTGLDPKRDKIIEVGAC-LVEQGKVKRELSFLINPH-REISERVELLTGITGRMV 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-----INAELQRINKDPLDPSRIID 125 + P + E F E + H+ FD F +NA L P + + ID Sbjct: 78 EHAPGIEEVIGEIAAFVGE--LPLLGHHVIFDYSFLKHAAVNAGL------PFEKNG-ID 128 Query: 126 TLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 TLS+ RR P + +L++ C + I + H AL D+ +Y + + Sbjct: 129 TLSLCRRFMPPEEKKNLSAACGWF--QIPRETAHRALADAKAAHLLYQSLR------DCH 180 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 F+ NE+ F + P I +KR++P R KE L E Sbjct: 181 FQENEEAFAAK-----PLIYKVKREQPASKR-QKEGLRE 213 >gi|212696923|ref|ZP_03305051.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM 7454] gi|212676213|gb|EEB35820.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM 7454] Length = 1010 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 11/163 (6%) Query: 14 IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDEFLKD 72 +ETTGL +D+I EIGAV++ + + F + P K PE ++L GIT+E + D Sbjct: 1 METTGLYKYSDKITEIGAVKV-ENGEITEVFNELVNP--EKMIPEKVVELTGITNEMVMD 57 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 KP I +F +F ++A ++ N FD+GFI ++ +P +DTL +AR Sbjct: 58 KPKIDEILPKFLEF--SKDAYFVGQNTDFDIGFIKEACDNLSYQ-FEPVY-LDTLPMARA 113 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 PS R L+ L K+ + + + H A D+ + V+IK+ Sbjct: 114 VFPSMGRFSLDKLAKK--LAVGPFNHHRASDDAMTTAKVFIKL 154 >gi|320450504|ref|YP_004202600.1| putative DNA polymerase III subunit epsilon [Thermus scotoductus SA-01] gi|320150673|gb|ADW22051.1| putative DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01] Length = 247 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 10/155 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + +IE+G V L R+FQ + P+ R SP +L GI Sbjct: 74 VVLDLETTGLSPGLNEVIEVGLVRL--EQGERRSFQSLVRPS-RPPSPFIERLTGIRAWE 130 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L++ PS + + + + A + NA FD+GF+ L+ + +P ++DTL + Sbjct: 131 LEEAPSLEEVLEKAYPLL--RGATLVIQNASFDLGFLRPALEGMGYSLENP--VVDTLRL 186 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 A+R P R L++L + + + R H AL D Sbjct: 187 AKRAMPGLRRYGLDALSQV--LELPPREAHRALGD 219 >gi|331696575|ref|YP_004332814.1| DNA polymerase III subunit epsilon [Pseudonocardia dioxanivorans CB1190] gi|326951264|gb|AEA24961.1| DNA polymerase III, epsilon subunit [Pseudonocardia dioxanivorans CB1190] Length = 586 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 28/192 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHG 64 +V D+ETTG S N I EIGAV++ R +V L G P + L G Sbjct: 32 VVLDLETTGGSSANHSITEIGAVKV-------RGGEVLGELATLVDPGTGVPPGVVALTG 84 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRI 123 IT + P + + +F A +AHNA FD GF+ A +R ++ P P Sbjct: 85 ITTAMVTGAPRLAQVLPTLLEFMG--GAVLVAHNAPFDAGFLRAACERHDRRWPRPPQLC 142 Query: 124 IDTLS---IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGG 178 L+ ++R + PS R L +L + +G + + H AL D+ +V +++ VG Sbjct: 143 TARLARAVLSRAEAPSVR--LGALARLFG--TATQPTHRALADARATVEVLHRLLERVG- 197 Query: 179 SQINFGFKTNED 190 N G ++ E+ Sbjct: 198 ---NLGVQSLEE 206 >gi|256059183|ref|ZP_05449390.1| DNA polymerase III, epsilon chain [Brucella neotomae 5K33] Length = 224 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 7/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172 T+ ARR L+ + G+ HR HGAL D++L + +Y+ Sbjct: 125 PFYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 174 >gi|118471901|ref|YP_888535.1| hypothetical protein MSMEG_4259 [Mycobacterium smegmatis str. MC2 155] gi|118173188|gb|ABK74084.1| DNA polymerase III, epsilon subunit [Mycobacterium smegmatis str. MC2 155] Length = 672 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 33/179 (18%) Query: 10 IVFDIETTGLDSKN-------DRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSP 57 +V D+ETTG +K D I EIGAV++ R +V L GR P Sbjct: 77 VVVDLETTGGRAKATAPGGLCDAITEIGAVKV-------RGGEVLGELATLVDPGRAIPP 129 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116 + ++L GIT ++D P ++ F +F + A +AHNA FD+GF+ A +R Sbjct: 130 QIVELTGITTAMVRDAPRIDAVLPMFLEF--ARGAVLVAHNAGFDIGFLRAAAERTQLTW 187 Query: 117 PLDPSRIIDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 P P ++ T+ +ARR + PS R L+ L + +G + + H AL D+ DV Sbjct: 188 PRPP--VLCTVKLARRVLTRDEAPSVR--LSELARLFGASTT--PTHRALDDARATVDV 240 >gi|170739695|ref|YP_001768350.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] gi|168193969|gb|ACA15916.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] Length = 222 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----GRKNSPEALKL 62 R + D+ETTGL ++ DR++ GAV LLD + V C + GR + P A + Sbjct: 21 RLLAVDVETTGLGAE-DRVVSFGAV-LLDTATLLGGSPVLACHHLIFDPGRPSHPRAEAV 78 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPS 121 HG D L+ + + +AHNA FD+GF+ E + + DP P+ Sbjct: 79 HGYDDWLLRHQDPARGHLDAVAALLAGADLV-VAHNAAFDLGFLAREFRAAGRPDPARPT 137 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 T+ RR+ + L+++C+R + + ++HGAL D+ L VY+ Sbjct: 138 YC--TMEAYRRRGEPGSSALDAVCRRVKLARAG-ARHGALEDAWLALRVYL 185 >gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147] Length = 405 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 22/169 (13%) Query: 13 DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFL 70 D+ETTG + RI EIG V + D+ T T N R+ P ++ L GITD+ + Sbjct: 19 DLETTGGSAVEHRITEIGVVVVSADHVSTWTTLV-----NPRQAIPPFIQQLTGITDDMV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSRIIDT 126 + P+F+ + S ++ + + ++AHNA FD GF+ AE +R N D ++ T Sbjct: 74 RGAPTFADVASALFERLDGKL--FVAHNASFDRGFLRAEFERAGFAFNPD------VLCT 125 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++R P SR+ L++L R+ +T S ++H AL D+ L+ + K+ Sbjct: 126 VRLSRVLFPRESRHGLDALIARHALTPS--ARHRALADADLIWQFWQKL 172 >gi|83312383|ref|YP_422647.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] gi|82947224|dbj|BAE52088.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 215 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 26/193 (13%) Query: 8 RKIVFDIETTGLDSKNDR--------------IIEIGAVELL---DYSKTNRTFQVFLCP 50 R + D ETTG +IEIG +EL+ + KT ++Q L P Sbjct: 12 RIVAIDAETTGFKVPTPAEIKKMPKGLRLPGVVIEIGCLELVRGDEGWKTGESWQRRLQP 71 Query: 51 NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 G S ++ +HGI+ LK PSF + +F F Q+A +AH+A+ ++ F+N E Sbjct: 72 GG-PISKASIDVHGISPAELKTAPSFRDVLDDFEAFIG-QDA-LLAHSAENEMEFLNFEY 128 Query: 111 QRINKDPLDP-----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR-SKHGALLDS 164 R + D + T ++R+ P L+ LC R + S R HGALLD+ Sbjct: 129 ARAGRCGFDEMIFGDGDFVCTQELSRQFFPGVPGSLDVLCDRLWVDRSDRFEHHGALLDA 188 Query: 165 HLLSDVYIKMMVG 177 L ++ ++KM G Sbjct: 189 ILTAEAFMKMAGG 201 >gi|227505453|ref|ZP_03935502.1| possible exonuclease, RNase T and DNA polymerase III [Corynebacterium striatum ATCC 6940] gi|227197946|gb|EEI77994.1| possible exonuclease, RNase T and DNA polymerase III [Corynebacterium striatum ATCC 6940] Length = 1118 Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 11/176 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG S DR+IEIG V LLD+++ T++ + P +++ P + +H IT Sbjct: 6 RYAVVDFETTGFGS-TDRVIEIGVV-LLDHNREVESTWETLVQP--QRDIPNSF-VHHIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIID 125 + D P F + EF+D N + +AHNA F+V F+ E + P + ++D Sbjct: 61 PTDVVDAPLFGEVAGEFFDLLNGRTV--VAHNAPFEVRFLQREFSNLGVAWPNYGAWVVD 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 T + ++ +P L K GIT + H AL D+ ++++ ++ G+ + Sbjct: 119 TKRLFQQTYPGEGTTLEHALKVVGIT--NARPHSALADTLATAELFAWLVSQGNDV 172 >gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens CPE str. F4969] Length = 876 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 14/159 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+E+TG+D D II+I A++L + F+ FL +K+ ++ +HG +DE Sbjct: 511 IVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFL--KNKKSVKDSYYVHGFSDEM 568 Query: 70 LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 L+ DK + EF ++ +++ + HN ++D+ + +EL+R N D Sbjct: 569 LQRIGEDK---EKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFKTFYD 623 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 TL I RR +P + N L +L K Y H+ H A+ D Sbjct: 624 TLDIYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 660 >gi|261416331|ref|YP_003250014.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372787|gb|ACX75532.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325547|gb|ADL24748.1| exonuclease, DNA polymerase III, epsilon subunit family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 215 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 19/181 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-------FQVFLCPNGRKNSPEALKL 62 + FD+ETTGL ++ D IIEIGAV+ K R F + PN + EA + Sbjct: 9 VAFDLETTGLVNRKDEIIEIGAVKFTVEVKNGRVVPKLISEFDTLVKPNMLIPA-EATNV 67 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPS 121 + ITD+ +++ P +F F + +AHNA FD F+ A Q P +P Sbjct: 68 NHITDKMVENAPPVGEALKQFTAFCGPGSI-LLAHNANFDASFLRTAYEQNPQFTPGNP- 125 Query: 122 RIIDTLSIARRKHPSSRND-----LNSLCKR--YGITISHRSKHGALLDSHLLSDVYIKM 174 ++D+L+I++ P N N KR +TI H ++ D +L +V++ + Sbjct: 126 -VVDSLAISKTIMPELANHKLGFMANMFMKRGEISMTIDEEKMHRSVYDCEMLMEVFVAL 184 Query: 175 M 175 + Sbjct: 185 L 185 >gi|78044638|ref|YP_360855.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus hydrogenoformans Z-2901] gi|77996753|gb|ABB15652.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 222 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 10/168 (5%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTGL + D II IGAV++++ + T F ++ P ++ PE + +L GI+ + Sbjct: 40 VIDLETTGLKPFQGDEIIAIGAVKIINGNITRPAFHAYVNP--QREIPEVVQRLTGISPK 97 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P ++ + DF +N+ + H+ FD+ F+N L + L P R++DT+ Sbjct: 98 TVQNAPPLTNTLTTLLDF--ARNSVIVGHSVNFDLAFLNKHLSSLTGKKLTP-RLLDTVD 154 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P N L + +++ I++ R H AL D+ + + V++ + Sbjct: 155 LGIYLFPREPNYSLENFAQKFAISLQGR--HTALGDAVICAKVFLNFL 200 >gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens E str. JGS1987] Length = 876 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 14/159 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+E+TG+D D II+I A++L + F+ FL +K+ ++ +HG +DE Sbjct: 511 IVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFL--KNKKSVKDSYYVHGFSDEM 568 Query: 70 LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 L+ DK + EF ++ +++ + HN ++D+ + +EL+R N D Sbjct: 569 LQRIGEDK---EKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFKTFYD 623 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 TL I RR +P + N L +L K Y H+ H A+ D Sbjct: 624 TLDIYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 660 >gi|295092491|emb|CBK78598.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium cf. saccharolyticum K10] gi|295115331|emb|CBL36178.1| exonuclease, DNA polymerase III, epsilon subunit family [butyrate-producing bacterium SM4/1] Length = 251 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 100/221 (45%), Gaps = 35/221 (15%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTGLD K D+IIE+GA L++ K R + P+ R+ S L GIT + Sbjct: 20 AIDLETTGLDPKRDKIIEVGAC-LVEQGKVKRELSFLINPH-REISERVELLTGITGRMV 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-----INAELQRINKDPLDPSRIID 125 + P + E F E + H+ FD F +NA L P + + ID Sbjct: 78 EHAPGIEEVIGEIAAFVGE--LPLLGHHVIFDYSFLKHAAVNAGL------PFEKNG-ID 128 Query: 126 TLSIARR-KHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 TLS+ RR P + +L++ C + I +HR+ LSD ++ S + Sbjct: 129 TLSLCRRFMPPEEKKNLSAACGWFQIPRETAHRA----------LSDAKAAHLLYQSLRD 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 F+ NE+ F + P I +KR++P R KE L E Sbjct: 179 CHFQENEEAFAAK-----PLIYKVKREQPASKR-QKEGLRE 213 >gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing bacterium SS3/4] Length = 1376 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 93/172 (54%), Gaps = 19/172 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66 +VFDIETTG ++IIEIGAV++ + +R + F+ P P + +L GI Sbjct: 416 VVFDIETTGFSPIKNKIIEIGAVKVRNGEIIDRMDE-FVNP----EVPIPFDIERLTGIN 470 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124 D + + + F +F +A +AHNA FDV FI NA L ++ DP ++ Sbjct: 471 DAMVMGADTVDKVLPRFLEFVG--DAALVAHNASFDVSFISHNAGLLGLSFDP----TVL 524 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+++AR P+ +R L+++ K G+++ + H A+ D+ + +++K + Sbjct: 525 DTVTLARALLPNLNRFKLDTVAKALGVSLENH--HRAVDDAEATAGIFLKFV 574 >gi|163802995|ref|ZP_02196881.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4] gi|159173169|gb|EDP57998.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4] Length = 209 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 13/170 (7%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+++D + +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKIVDGEVVD-SFQQLMNP-GFRVSSFIEGYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ PS + + F +F +N IAHNA FD F++AEL+RIN +L Sbjct: 66 MLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINLGY--SGEFACSLL 121 Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +ARR PS + L L RY + H AL D+ + + +++ M+ Sbjct: 122 VARRLIQDAPSHK--LGELV-RYKNIENDGVFHRALADAQVTARLWLLMV 168 >gi|163844775|ref|YP_001622430.1| DNA polymerase III epsilon subunit family exonuclease [Brucella suis ATCC 23445] gi|163675498|gb|ABY39608.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella suis ATCC 23445] Length = 224 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 7/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTCYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172 + T+ ARR L+ + G+ HR HGAL D++L + +Y+ Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGHR--HGALEDAYLTAGLYL 174 >gi|315187162|gb|EFU20919.1| DNA polymerase III, epsilon subunit [Spirochaeta thermophila DSM 6578] Length = 198 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGLD ++EI V+ R F L E K+HGI D+ Sbjct: 22 VAFDLETTGLDPVRHSVVEIACVKF--QGGEPRAFFSLLVKPPHPIPAEVTKIHGIGDQD 79 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P S+ F +AHNA FD+ F+ E R + P R IDT + Sbjct: 80 VEEAPPLPSVLPMLESFVGTHL--LVAHNAPFDLSFLRIEYARCGR-PYPGFRAIDTRLL 136 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 AR P R L SL + I + + H AL D+ D++ + Sbjct: 137 ARSVLPHLGRYSLASLTRALDIPL--QQHHRALSDAWACGDLFYAL 180 >gi|311033291|ref|ZP_07711381.1| Exonuclease [Bacillus sp. m3-13] Length = 216 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 7/174 (4%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62 +K+ VFD ETTG + +++DR+IE+GAV++ + N +Q ++ PN R+ E ++L Sbjct: 25 DKLEFTVFDTETTGFNVARDDRLIELGAVKIKNLQVIDNSAYQTYINPN-RQIPREIIEL 83 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 IT E + P ++ + N+ + ++ H FD+ I AEL+R N +P + Sbjct: 84 TSITQEQTDEAPQALEAITKLTNMANQTSVCYVGHYLAFDMQAIQAELKRNNLKWKNP-K 142 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DTL + PS DL + +G I R H AL D+ + ++ +++ Sbjct: 143 SLDTLDLIGYIAPSYDMRDLEKYARDFGTRIYQR--HSALGDALTTAYLFTELL 194 >gi|254443946|ref|ZP_05057422.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] gi|198258254|gb|EDY82562.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] Length = 205 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL S DR IEIGAV + T R FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPSLGDRAIEIGAVRIEGGEVTGR-FQELMNP-GCRISGFIEDYTGITNG 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D + F +F N +AHNA FD F++AEL RI++ + + ++ Sbjct: 66 MLRDAEPCEVVMERFAEFIGGHN--LVAHNASFDQRFLDAELARISQRRV--GDFVCSML 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR + N RY H AL DS + + ++I+M+ Sbjct: 122 AARRLFQDAPNHQLGTLVRYANFSVDGVFHRALYDSEMTTKLWIRML 168 >gi|84385238|ref|ZP_00988270.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01] gi|84379835|gb|EAP96686.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01] Length = 207 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL + DR IEIGAV+L++ + TFQ + P G + S GI++ Sbjct: 10 IVLDFETTGLSPNMGDRAIEIGAVKLVNGEVVD-TFQQLMNP-GFRVSGFIESYTGISNR 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L S S + EF DF Q ++ +AHNA FD F++AEL I +D + ++ Sbjct: 68 MLSTAASCSEVMDEFADFI--QGSQLVAHNASFDKRFLDAELDFIGRDY--TGKFACSML 123 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR + + L L + I + + H AL DS + + +++ M+ Sbjct: 124 IARRLIQDAPTHKLGDLVRFKNID-NDGTFHRALADSEMTARLWLLMI 170 >gi|304408937|ref|ZP_07390558.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|307302940|ref|ZP_07582695.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] gi|304352758|gb|EFM17155.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|306913300|gb|EFN43722.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] Length = 208 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 16/208 (7%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL ++ DR IEIGAV + D T R F + P G + S GI+++ Sbjct: 10 VVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFIEDYTGISNQ 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D + + + F DF + N +AHNA FD F++AE +I L + +L Sbjct: 68 MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL--GQFGCSLL 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +ARR + ++ N RY + + H AL D+ + +++ M+ Q FG Sbjct: 124 VARRLYQAAPNHQLGTLVRYKKLPTDGTFHRALADAEMTGYLWLAMLADLQQ-EFGVNAP 182 Query: 189 EDRFFKE-EKKTVPNISLLKRDKPLFTR 215 ++ KKT K D P F R Sbjct: 183 TFELLQKIAKKT-------KADVPKFLR 203 >gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003] gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003] Length = 383 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 10 IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67 IVF D+ETTG + RI E+G VE+ T + V + ++ P ++ L GIT+ Sbjct: 15 IVFVDLETTGGSTNEHRITEVGVVEVGPTGVTRWSSLV----DPQQPIPSFIQQLTGITN 70 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P+F +I E + N + ++AHNA FD GF+ E +R+ DP ++ T+ Sbjct: 71 AMVRGAPTFDAIAPELFARLNGKL--FVAHNASFDRGFLRGEFRRVGIS-FDPD-VLCTV 126 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R PS R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 127 RLSRALFPSEKRHGLDALVERHSLVPSDR--HRALADADLIWQFWQRL 172 >gi|217973179|ref|YP_002357930.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223] gi|217498314|gb|ACK46507.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223] Length = 208 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 16/208 (7%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL ++ DR IEIGAV L++ + F + P G + S GI+++ Sbjct: 10 VVLDFETTGLSPNQGDRAIEIGAV-LIENGVITQRFSELMNP-GFRISRFIEDYTGISNQ 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D + + + F DF + N +AHNA FD F++AE +I L + +L Sbjct: 68 MLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL--GQFGCSLL 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +ARR + ++ N RY + + H AL D+ + +++ M+ Q FG + Sbjct: 124 VARRLYQAAPNHQLGTLVRYKQLPTDGTFHRALADAEMTGHLWLAMLADLQQ-EFGLCSP 182 Query: 189 EDRFFKE-EKKTVPNISLLKRDKPLFTR 215 ++ KKT K D P F R Sbjct: 183 TFELLQKLAKKT-------KADVPKFLR 203 >gi|225450649|ref|XP_002282861.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] gi|225450651|ref|XP_002282855.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] Length = 337 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 81/175 (46%), Gaps = 20/175 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD ETTGL NDRIIEIG +L N TFQ + P +P +HGIT Sbjct: 134 IVFDTETTGLSRANDRIIEIGLQDL--GGGENSTFQTLVNPERIVPNPH---VHGITTYM 188 Query: 70 L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121 + D P + + + + W+AHN + FDV F+ E R N + Sbjct: 189 VNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNW 248 Query: 122 RIIDTLSIARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDV 170 R +DTL +AR S+ +D L +L + Y I + + H L D + LS V Sbjct: 249 RFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPA-HRVLSDVYTLSQV 302 >gi|183983226|ref|YP_001851517.1| hypothetical protein MMAR_3235 [Mycobacterium marinum M] gi|183176552|gb|ACC41662.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 674 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 31/214 (14%) Query: 10 IVFDIETTGL------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTG S D I EIGAV++ F + P R P+ ++L Sbjct: 58 VVVDLETTGGRATGTEASPPDAITEIGAVKVRGGVILGE-FATLVDPQ-RSIPPQIVRLT 115 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT L D P+ S+ F++F N+ +AHNA FD+GF+ A R + S++ Sbjct: 116 GITTAMLCDAPTIDSVLPMFFEFVG--NSVLVAHNAGFDIGFLRAAAGRCDIA-WPGSKV 172 Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176 + T+ +ARR + PS R L +L + + +++ + H AL D+ +V ++ V Sbjct: 173 LCTVRLARRVLSREEAPSVR--LAALARLF--SVATQPTHRALDDARATVEVLHALIERV 228 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 G N G + + E + +P ++ +R K Sbjct: 229 G----NQGVHS-----YAELRAYLPGVTPAQRRK 253 >gi|90023051|ref|YP_528878.1| DNA-directed DNA polymerase [Saccharophagus degradans 2-40] gi|89952651|gb|ABD82666.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40] Length = 215 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 9/169 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV L + +R FQ + P G + S GI + Sbjct: 16 VVLDFETTGLSPDMGDRAIEIGAVRLHNGEIVDR-FQALMNP-GFQISGFIASYTGIDNS 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F ++ N +AHNA FD F++AEL RI + +L Sbjct: 74 MLAKAPPCDEVMDAFANYIGNDN--LVAHNASFDKRFLDAELYRIGRS--YSGDFTCSLL 129 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ARR P++ N L +L K + S + H AL DS + + V++ M++ Sbjct: 130 AARRLFPNAENHKLGTLVKHTKLQ-SDGAFHRALYDSEMTAKVWMVMLM 177 >gi|296089746|emb|CBI39565.3| unnamed protein product [Vitis vinifera] Length = 332 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 81/175 (46%), Gaps = 20/175 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD ETTGL NDRIIEIG +L N TFQ + P +P +HGIT Sbjct: 129 IVFDTETTGLSRANDRIIEIGLQDL--GGGENSTFQTLVNPERIVPNPH---VHGITTYM 183 Query: 70 L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121 + D P + + + + W+AHN + FDV F+ E R N + Sbjct: 184 VNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNW 243 Query: 122 RIIDTLSIARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDV 170 R +DTL +AR S+ +D L +L + Y I + + H L D + LS V Sbjct: 244 RFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPA-HRVLSDVYTLSQV 297 >gi|167837493|ref|ZP_02464376.1| possible DNA polymerase/helicase [Burkholderia thailandensis MSMB43] Length = 379 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 91/163 (55%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V +++ S + T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAAEHRITEIGVV-VVNASHVS-TWTTLVDPR-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I S ++ + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIASALFERLDGKL--FVAHNASFDRGFLRAEFERAGVA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|225849433|ref|YP_002729598.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium azorense Az-Fu1] gi|225644689|gb|ACN99739.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium azorense Az-Fu1] Length = 205 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 90/168 (53%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTGL+ N IIEI A+ + ++ F + P+ KL GIT+ Sbjct: 12 LIVDLETTGLNPVNSEIIEIAALRVEGGIVVDK-FHTLVKPSIGFIPTYITKLTGITNAL 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + DKP+ +F +F F +N+ +AHNA+FD+ F+N+ +I + + ++ T ++ Sbjct: 71 VVDKPTIEEVFPQFLKF--SENSIIVAHNAQFDMSFLNSVSYQITGRSIQ-NPVLCTQNL 127 Query: 130 ARRKHP--SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+R P S++ +N Y I + KH AL D+ + +++ K++ Sbjct: 128 AKRLFPDLPSKSLVN---LAYHFNIPYNKKHRALEDALVTYELFKKII 172 >gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis OL] gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis OL] Length = 1402 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG DS+ ++IIEIGAV++ + T R F F+ P G K +L GI + Sbjct: 391 VVVDVETTGFDSQKNKIIEIGAVKIENGQITER-FSTFVDPEG-KIPVRISELTGIYQDM 448 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P EF F + +AHNA+FD+GF+ Q + IDTL + Sbjct: 449 VDKAPKLRDAILEFEKF--ASGSVLVAHNAQFDIGFLKKAYQECG--IIFDYTYIDTLEL 504 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +RR S + LN + + + + H H A D+ + ++ +M Sbjct: 505 SRRLLTGLSSHKLNKVAEFLNVELRHH--HRADSDAETTAGIFTSLM 549 >gi|333027027|ref|ZP_08455091.1| putative DNA polymerase III [Streptomyces sp. Tu6071] gi|332746879|gb|EGJ77320.1| putative DNA polymerase III [Streptomyces sp. Tu6071] Length = 611 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 9/162 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ET+GL ++ DR++ + V + + F + P P + +HG+T E L Sbjct: 22 LVDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDPG---CDPGPVDVHGLTRERL 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P+F I Q+ +AHNA+FD F+ E R L +R + TL++ Sbjct: 79 SGAPAFDQIAGRLGAML--QDRVLVAHNAQFDYDFLAHEFARARLY-LPVTRRLCTLALN 135 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ P +R+ L+SL YG+ + H AL D+ +L+ ++ Sbjct: 136 RQVDPPTRDMKLDSLAAHYGVPRTR--AHDALDDTRVLAGIF 175 >gi|319650832|ref|ZP_08004969.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2] gi|317397430|gb|EFV78131.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2] Length = 220 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITD 67 IVFD ETTG S DRIIEIGAV + + + FQ ++ P R+ S E +L I+D Sbjct: 29 IVFDTETTGFQVSATDRIIEIGAVPVKGFQVQEKDLFQTYVNPK-RQISREIRELTSISD 87 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +KD P F+D+ + A + H FD I +E +R K L IDT Sbjct: 88 ELVKDAPQALEAILSFFDYVESREAVCLVGHYVGFDALAIKSEFKR-EKLALKNFLTIDT 146 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHR--SKHGALLDSHLLSDVYIKMM 175 L + PS D+ L +RY + R +H A+ D+ + +Y++++ Sbjct: 147 LDLIGFIAPS--YDMRDL-ERYAMAFGTRIYDRHSAVGDALTTAYLYVELL 194 >gi|251772732|gb|EES53294.1| DNA polymerase III, epsilon subunit [Leptospirillum ferrodiazotrophum] Length = 288 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 28/220 (12%) Query: 10 IVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL +ND RI+EIG + + D + P G P ++HGI D Sbjct: 32 LFVDVETTGLLFENDARIVEIG-ISVWDSFGLKERMTSLINP-GSPIPPMYTRIHGIDDV 89 Query: 69 FLKDKPSFSSIFSEFW--DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 ++ P+F EFW + Q IAHN FD+G IN EL R + PL +P ID Sbjct: 90 MVEHSPTFL----EFWMENGIRFQGKVVIAHNLSFDMGMINRELMRRDMAPLGNPG--ID 143 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY-------IKMMVG 177 T+ I + P +N L+ L K G + H S+H A D L V ++ + G Sbjct: 144 TVPILKSLLPREKNHKLSHLAKSLG--VRHDSRHRAEDDVAALEQVLTIALDRPLEDLRG 201 Query: 178 GSQINFGF--KTNEDRFFKEE----KKTVPNISLLKRDKP 211 ++F F R+F++ +KT ++++ +KP Sbjct: 202 PLGMDFSFWGGAPSHRYFRDSVAWCQKTCEPLTIMLAEKP 241 >gi|146328835|ref|YP_001209227.1| ribonuclease T [Dichelobacter nodosus VCS1703A] gi|146232305|gb|ABQ13283.1| ribonuclease T [Dichelobacter nodosus VCS1703A] Length = 206 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-----RTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G D + D ++E+ AV L+++++ TF + P G +P++LK++ Sbjct: 15 VVVDVETGGFDHEKDALLEVAAV-LVNFNEAGNLAPVETFHYHVKPFEGAHLNPDSLKIN 73 Query: 64 GITDEFLKDKPSFSSI------FSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN 114 GI D F +P+ + F ++ Q+ + HNA FD+GFINA R N Sbjct: 74 GI-DPFHPLRPALDEVTVAKQLFGAIREYQKAQSCTRSILVGHNAHFDLGFINALAARCN 132 Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P P +DT+S+ + + L + K G HGA D+ L + ++ Sbjct: 133 YQHNPFHPFSSLDTVSLGALAY--GQTVLARIAKAAGFEYDSERAHGAKYDTELTAQIFC 190 Query: 173 KMM 175 ++ Sbjct: 191 HII 193 >gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001] gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001] Length = 386 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 13/168 (7%) Query: 10 IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67 IVF D+ETTG + RI E+G VE+ T + V + ++ P ++ L GIT+ Sbjct: 15 IVFVDLETTGGSTNEHRITEVGVVEVGPTGVTRWSSLV----DPQQPIPSFIQQLTGITN 70 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P+F +I E F ++AHNA FD GF+ E +R+ DP ++ T+ Sbjct: 71 AMVRGAPTFEAIAPEL--FARLDGKLFVAHNASFDRGFLRGEFRRVGIS-FDPD-VLCTV 126 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R PS R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 127 RLSRALFPSEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172 >gi|152967191|ref|YP_001362975.1| hypothetical protein Krad_3247 [Kineococcus radiotolerans SRS30216] gi|151361708|gb|ABS04711.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans SRS30216] Length = 601 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 17/188 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KLHGIT 66 +V D+ETTG + I EIGAV++ + FQ + R +SP L GIT Sbjct: 29 VVVDLETTGGAPADAGITEIGAVKVRG-GQVLGEFQTLV----RPSSPIPAFVQVLTGIT 83 Query: 67 DEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + PS + + F +F E+ +AHNA +D F+ A Q + P R++D Sbjct: 84 NGMVATAPSLAQVLPAFLEFAGFERGTVLVAHNAPYDTSFLKAACQ-VTGRPWPKPRVVD 142 Query: 126 TLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 T+ +AR+ + + L +L + +G + H AL D+ DV ++ G N Sbjct: 143 TVVLARQLVDRDEAPDRKLGTLARLFGTATT--PDHRALHDARATVDVLHALL--GRVGN 198 Query: 183 FGFKTNED 190 G + ED Sbjct: 199 RGVHSLED 206 >gi|325847082|ref|ZP_08169908.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481054|gb|EGC84099.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 1010 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 15/165 (9%) Query: 14 IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDEFLKD 72 +ETTGL +D+I EIGAV++ + + F + P K PE ++L GIT+E + D Sbjct: 1 METTGLYKYSDKITEIGAVKV-ENGEITEVFNELVNP--EKMIPEKVVELTGITNEMVMD 57 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLDPSRIIDTLSIA 130 KP I +F +F ++A ++ N FD+GF+ ++ +P+ +DTL +A Sbjct: 58 KPKIDEILPKFLEF--SKDAYFVGQNTDFDIGFVKEACDNLSYQFEPI----YLDTLPMA 111 Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R PS R L+ L K+ + + + H A D+ + V+IK+ Sbjct: 112 RAVFPSMGRFSLDKLAKK--LAVGPFNHHRASDDAMTTAKVFIKL 154 >gi|119357378|ref|YP_912022.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides DSM 266] gi|119354727|gb|ABL65598.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides DSM 266] Length = 219 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV L+++ + +Q + P G + S GIT+E Sbjct: 10 VVLDFETTGLSPQYGDRAIEIGAV-LVEHGEIVDRYQKLMNP-GFRISRFIESYTGITNE 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L +P + +EF +F N +AHNA FD F++ EL+R + + +L Sbjct: 68 MLSGQPCCEEVMTEFSEFIAGHNI--VAHNASFDRRFLDFELKRAKR--VYEGACCCSLL 123 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++RR + S N L +L GI S H AL D+ + + +++ M+ Sbjct: 124 VSRRIYQDSPNHKLQTLVSHAGIP-EIGSFHRALADAEMTAHLWMSMI 170 >gi|162447117|ref|YP_001620249.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A] gi|161985224|gb|ABX80873.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A] Length = 1504 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 28/186 (15%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTG D+IIEI A ++ R F+V + P + S ++ ITDE + Sbjct: 414 VFDIETTGFSFTRDKIIEIAAYKVRGGFIAER-FEVLINPE-EQLSETTKRITNITDEMV 471 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +++ + + F +F + +AHNA FD+GFI E R+ +P +IDTL+IA Sbjct: 472 ENEKTIEEVLPTFLEFI--KGTVLVAHNASFDIGFI-YEKSRLLGLQHEPFAVIDTLNIA 528 Query: 131 RRKHPSS---------------------RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 R + ++ R +L +L K + + + + H A+ D++ ++ Sbjct: 529 RYFYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNL--EAHHRAIYDAYATAE 586 Query: 170 VYIKMM 175 V++ M+ Sbjct: 587 VFLNML 592 >gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO] gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO] Length = 1379 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 7/161 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I ++ R ++ DIETTGL IIEIGAV + + T+ F F+ P+ + N+ ++ Sbjct: 363 IEIDQERYVIVDIETTGLHPMFSEIIEIGAVAIENGQITDE-FHSFVKPSEKLNA-FTVQ 420 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 ITD+ L ++PS + +F +F ++ +AHNA FD F+ +++ K +P+ Sbjct: 421 FTKITDQMLANQPSIEEVLPKFMEFC--KDTTLVAHNANFDYRFLRYWIEKSLKLNWEPA 478 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY--GITISHRSKHGA 160 +IDTL++A++ S +L L + G HR+ A Sbjct: 479 -VIDTLALAKKLVRLSSYNLEKLASHFKLGPFSHHRASEDA 518 >gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010] gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010] Length = 488 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 9/159 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTG + DR+ EI +E+ D R +Q L P R P +L GITD Sbjct: 12 VILDCETTGGRASRDRLTEIALIEVEDGHVVKR-WQTLLNPL-RPIPPWITRLTGITDAT 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+F I E + + + +AHNA+FD F+ QR ++ + ++ + Sbjct: 70 VADAPTFDEIADELFACLDGKVI--VAHNARFDYSFLRQSFQRCGYTL--GNKTLCSVKL 125 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R+ P R + L+ + +R G+TI +R H A+ D+ +L Sbjct: 126 SRQLFPEHRSHGLDRIIERLGLTIDNR--HRAMADTEVL 162 >gi|239906614|ref|YP_002953355.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus RS-1] gi|239796480|dbj|BAH75469.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus RS-1] Length = 242 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 80/183 (43%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D E TG D K D I+ + AV L S TF P R ++ +HG+T Sbjct: 47 VVLDTELTGFDPKRDAIVSVAAVRLRGLSIMAGETFAALTRPQ-RDVPRQSSLVHGLTAS 105 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L ++ DF A + H+ D+GF+NA +R D L + IDTL Sbjct: 106 TLSQAADLEAVLLRLLDFIGP--AVIVGHHVDLDMGFLNAASRRYFGDEL-AAPCIDTLR 162 Query: 129 IARRKHPS------------SRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKM 174 +A + DL SLC+RYG+ +H ++H AL ++L VY+ Sbjct: 163 LAMAYEEKRLSLEGGAGLEHAAFDLPSLCRRYGLPEFAAHDARHDALAAAYLF--VYLAK 220 Query: 175 MVG 177 +G Sbjct: 221 KLG 223 >gi|116333503|ref|YP_795030.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367] gi|116098850|gb|ABJ63999.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367] Length = 948 Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 17/168 (10%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V DIETTG + DRII+IG V + +++ F+ + P K P A+ +L GIT++ Sbjct: 9 VVDIETTGTSVTDGDRIIQIGCV-FVQHNQVINHFETDVNP--LKEIPAAISRLTGITNK 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + N ++AHN FD+ FINAEL+R+ P P +DT+S Sbjct: 66 RVRHAPLFDDVAGTLYSLLT--NTVFVAHNVNFDLPFINAELERVGY-PALPIAAVDTVS 122 Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +++ P++ + DL+ L I H + H A D+ ++++I Sbjct: 123 LSQILLPTATSFRLRDLSRL-----FNIEHDNPHSADSDASATAELFI 165 >gi|331269632|ref|YP_004396124.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925] gi|329126182|gb|AEB76127.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum BKT015925] Length = 1443 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 9/164 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG S D+IIEIGAV++ + + + +F F+ P K +L IT++ Sbjct: 431 VVFDLETTGFSSAYDKIIEIGAVKIKNGNIID-SFSTFVNPE-IKVPYNITELTSITNDD 488 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + SI +F +F + + +AHNA FD+ FI +N D ++DT+ + Sbjct: 489 VKNADTIDSILPKFIEFCGD--SVLVAHNANFDMSFIRKNCNDLNIDI--NYTVMDTVPL 544 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 A+ P R LN++ K G+++ + H A+ D+ D+ + Sbjct: 545 AKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATGDILL 586 >gi|319955911|ref|YP_004167174.1| DNA polymerase iii, epsilon subunit [Nitratifractor salsuginis DSM 16511] gi|319418315|gb|ADV45425.1| DNA polymerase III, epsilon subunit [Nitratifractor salsuginis DSM 16511] Length = 272 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 10/160 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDEF 69 + DIET G ++IEIGAV L + +R C PE +KL GI Sbjct: 75 IIDIETNGSKPGRSQVIEIGAVMLKEGKIIDRLETFVAC----AYLPEHIIKLTGIEPTD 130 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + PS ++ +F +A + AHNA FD GF+NA QR P+ + ++ T+ + Sbjct: 131 LAEAPSRKEALTQLRNFMG--DAVFTAHNAGFDHGFLNASFQRFGLGPIG-NPVLCTIDL 187 Query: 130 ARRKHPSSRNDLNSLCKR--YGITISHRSKHGALLDSHLL 167 ARR S R L L + G+ HR+ + AL S +L Sbjct: 188 ARRTFESERYGLAYLNESLDLGMQAHHRAYNDALAASKVL 227 >gi|296110428|ref|YP_003620809.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc kimchii IMSNU 11154] gi|295831959|gb|ADG39840.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc kimchii IMSNU 11154] Length = 1437 Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL + D+IIE+ AV+ + F ++ P G S KL ITD Sbjct: 420 VAFDLETTGLSAVTDKIIELSAVK-MQLGNVIEKFSEYINP-GFPLSDFTTKLTSITDTM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +I + F + + A I HN FD+GF+NA R N+ + + +IDTL Sbjct: 478 VAHADTEENIITRFRKWIGD--AVLIGHNVTFDIGFMNAAYARYNQTVIK-NPVIDTLPF 534 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 R +P ++ L +L KR+ I + H A+ D+ Sbjct: 535 TRWLYPDYKSYRLGTLAKRFNINLEQ--AHRAIFDA 568 >gi|193215454|ref|YP_001996653.1| DNA polymerase III subunit epsilon [Chloroherpeton thalassium ATCC 35110] gi|193088931|gb|ACF14206.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC 35110] Length = 229 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 16/175 (9%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R +VFD ETTGLD K D+II IGAV + D++ + +F+ + + E++ +HGI Sbjct: 42 VRFVVFDTETTGLDVKKDKIISIGAVAISDFAIQVADSFETLIRQEASGDK-ESIPVHGI 100 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + L + F + + +AH+A FD+ +N L R D + +ID Sbjct: 101 LKKDLAMAATEQGALESFLSYI--AGSVLVAHHAMFDIEILNQALGRFF-DLKIFNAVID 157 Query: 126 TLSIARR--KHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 T A+R K P S D L+ LC+RY I I R H A D+ + + ++ Sbjct: 158 TADFAKRIEKGPFSSQDTKAGDYSLDKLCERYRIPIYDR--HTAPGDAFITAQLF 210 >gi|120406462|ref|YP_956291.1| DNA polymerase III subunit epsilon [Mycobacterium vanbaalenii PYR-1] gi|119959280|gb|ABM16285.1| DNA polymerase III, epsilon subunit [Mycobacterium vanbaalenii PYR-1] Length = 333 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 11/168 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RI+ + A+ L D ++ L P P +HG+T E L Sbjct: 22 VVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAEML 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 +P+F + + + + +AHN FD F+ AE + ++ + P+D ++ T+ + Sbjct: 79 AGQPAFGDVVGDLIEVLRGRT--LVAHNVGFDYSFLTAEAEMVHAELPVD--TVMCTVEL 134 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ARR N L +L +G+T H AL D+ +L+ + ++V Sbjct: 135 ARRLDLGLDNLRLETLAAHWGVT--QMKPHDALDDAMVLAQILKPVLV 180 >gi|254505589|ref|ZP_05117736.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16] gi|219551706|gb|EED28684.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16] Length = 204 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 5/106 (4%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L++ + TFQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKLVNGEVVD-TFQQLMNP-GFRVSSFIEGYTGITNV 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 L+D PS + ++F F +N +AHNA FD F++ EL+R+N Sbjct: 66 MLRDAPSCDEVMAQFAQFIAGEN--LVAHNASFDKRFLDDELERVN 109 >gi|228998363|ref|ZP_04157954.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17] gi|228761284|gb|EEM10239.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17] Length = 315 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 15/168 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + NDRII++ AV ++ ++ F F+ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDRIIQVAAVRYRNHELADQ-FVSFVNPE-RFIPNRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127 + D P+ + F F E +AHNA FD+ F+ NA + R+ P + +IDT+ Sbjct: 69 VSDAPTIQEVLPLFLAFLGEDTI--VAHNASFDMRFLKSNANMLRL---PEPKNIVIDTV 123 Query: 128 SIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A+R KH + + L +L + GI + S H AL D + VY K Sbjct: 124 FLAKRYMKH-APNHKLETLKRMLGICL---SSHNALDDCITCAAVYQK 167 >gi|261856008|ref|YP_003263291.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus c2] gi|261836477|gb|ACX96244.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus c2] Length = 481 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 9/160 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 DIETTG ++ DRI EIG V L T + + P G L GIT+E + Sbjct: 23 CLDIETTGSHTERDRITEIGIVT-LHPDGTQSNWSCLIHP-GCAIPARITTLTGITNEMV 80 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D+P F+ + +N IAHNA+FD+GF+ +R +PS ++ ++ ++ Sbjct: 81 ADQPVFAHRAQALLERL--ENHIVIAHNARFDLGFLKQAFRREGIR-FNPS-VLCSVKLS 136 Query: 131 RRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 R+ P+ R++L+S+ +R G++ + ++H AL D+ +++D Sbjct: 137 RQMFPAERRHNLDSVMQRMGLSCA--ARHRALGDAAVVAD 174 >gi|117920694|ref|YP_869886.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3] gi|117613026|gb|ABK48480.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3] Length = 229 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 10/184 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL ++ R IEIGAV L++ + F + P R NS GI+++ Sbjct: 31 VVLDFETSGLSPNQGARAIEIGAV-LIEQGQITARFSELMNPGFRINS-FIEDYTGISNQ 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + F +F + + +AHNA FD F++AE +I P + +L Sbjct: 89 MLAHAAPCAEVMARFAEFIGKHH--LVAHNATFDQRFLDAEFSQIGHQ--YPGQFGCSLL 144 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +ARR +P + N + R+ ++ + H AL D+ + ++++M+ Q G+ Sbjct: 145 LARRLYPEAINHQLATLVRHKQLPTNGTYHRALADAEMTGHLWLRMLADLKQ---GYAIT 201 Query: 189 EDRF 192 E F Sbjct: 202 EPPF 205 >gi|329901259|ref|ZP_08272784.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] gi|327549191|gb|EGF33783.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] Length = 462 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 14/183 (7%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGIT 66 R D+ETTG + DRI E+G VE+ + + + V N ++ PE ++ L GI+ Sbjct: 9 RLAFVDLETTGATAVIDRITEVGIVEVDEDGVRHWSSLV----NPHRHIPEFIEGLTGIS 64 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P F + +E + ++AHNA+FD GF+ E +R+ D P+ ++ T Sbjct: 65 NAMVADAPGFDELAAEIHQRL--EGRIFLAHNARFDHGFLKNEFKRVGID-FRPT-VLCT 120 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMMVGGSQINF 183 + ++R+ +P ++++L++L +R+ + ++ R H AL D+ L+ + I +QIN Sbjct: 121 VKLSRKLYPEFAKHNLDTLAERHQLQVTER--HRALGDAQLIWQFWETIHTTFPHAQINA 178 Query: 184 GFK 186 K Sbjct: 179 AIK 181 >gi|54302908|ref|YP_132901.1| putative DNA polymerase III [Photobacterium profundum SS9] gi|46916332|emb|CAG23101.1| putative DNA polymerase III [Photobacterium profundum SS9] Length = 214 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 15/171 (8%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL ++ DR IEIGAV L++ + FQ + P G + S GIT+ Sbjct: 16 IVLDFETTGLSPTQGDRAIEIGAV-LMENGEVVDRFQKLMNP-GFRVSSFIESYTGITNN 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ + +F DF + N +AHNA FD F++AEL IN+ ++ Sbjct: 74 MLRTAAPCDEVMDQFTDFIGDYN--LVAHNASFDKRFLDAELDIINRSY--GGEFACSML 129 Query: 129 IARRKHPSSRND-LNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMM 175 IARR + ++ N L SL I + HR AL DS + + ++++M+ Sbjct: 130 IARRLYQNAPNHKLGSLVAYKNIDHDGVFHR----ALADSEMTAKLWLQML 176 >gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J] gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J] Length = 1468 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 93/174 (53%), Gaps = 17/174 (9%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +K++ ++FD+ETTGL + + I+E GAV L + + + Q F+ P G K P K+ G Sbjct: 406 DKLKFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKH-QFFIKPTG-KIPPAITKITG 463 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNE------QNAEWIAHNAKFDVGFINAELQRINKDPL 118 I+ + + D+ + S W+ E +++ +AHNA FD F+ ++ K L Sbjct: 464 ISQKMI-DETAIS------WEIALEKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSL 516 Query: 119 DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + IIDTL ++R +P+ + + L ++ KRY I H A D+ +L+ ++ Sbjct: 517 K-NPIIDTLEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIW 569 >gi|189346782|ref|YP_001943311.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] gi|189340929|gb|ACD90332.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] Length = 205 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 26/191 (13%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63 +++R +VFD ETTG D K D+II IGA+ L + +F+V L + +A+ +H Sbjct: 14 SEVRFVVFDTETTGFDLKTDKIISIGAIALTAQRIEVGDSFEV-LVRQEKVGDRDAVSVH 72 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPL 118 G+ + + S + F D+ N+ +A +A FD+ +N L R+ D Sbjct: 73 GLLRKDIASGIDEKSAVTAFLDYIG--NSVLVAQHAGFDITMVNRVLWKHFGIRLFND-- 128 Query: 119 DPSRIIDTLSIARR---------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++DT S+A+R H + L++LC+RY I + R H + D++L + Sbjct: 129 ----VVDTASLAKRLEKGPYYNLAHKAGEYRLDNLCERYNIRLHDR--HTSAGDAYLTAQ 182 Query: 170 VYIKMMVGGSQ 180 ++ +++ G + Sbjct: 183 LFQRLLAKGKK 193 >gi|310827165|ref|YP_003959522.1| DNA polymerase III PolC [Eubacterium limosum KIST612] gi|308738899|gb|ADO36559.1| DNA polymerase III PolC [Eubacterium limosum KIST612] Length = 1369 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL D IIEI AV++ + + TF + P+ R P L GIT++ Sbjct: 355 VFFDLETTGLIPGKDNIIEIAAVKIKNKHIVD-TFSKIVNPH-RPIPPFITNLTGITNQM 412 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128 ++D + F +F + +AHNAKFD+GF+ L N L+ + IDTL+ Sbjct: 413 VEDGEEEEAAVKAFCEFCG--DLILVAHNAKFDMGFMEIAL---NAHHLENNITYIDTLA 467 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R P+ ++++L L + + + H H AL DS + +++K+M Sbjct: 468 MSRTLIPTINKHNLKKLASYFKVDMGHH--HRALDDSVCSAKIFVKLM 513 >gi|31793370|ref|NP_855863.1| hypothetical protein Mb2214 [Mycobacterium bovis AF2122/97] gi|121638072|ref|YP_978296.1| hypothetical protein BCG_2207 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990566|ref|YP_002645253.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo 172] gi|31618962|emb|CAD97067.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121493720|emb|CAL72195.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773679|dbj|BAH26485.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo 172] Length = 645 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 35/225 (15%) Query: 10 IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTG + D I EIGAV++ + F + P P+ ++L Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRLT 101 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + + P+ ++ F++F ++ +AHNA FD+GF+ A +R + P ++ Sbjct: 102 GITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDITWPQP-QV 158 Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176 + T+ +ARR + PS R L +L + + ++ H AL D+ DV ++ V Sbjct: 159 LCTMRLARRVLSRDEAPSVR--LAALARLF--AVASNPTHRALDDARATVDVLHALIERV 214 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 G N G T + E + +PN++ +R K R+ E L Sbjct: 215 G----NQGVHT-----YAELRSYLPNVTQAQRCK----RVLAETL 246 >gi|304406903|ref|ZP_07388557.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus curdlanolyticus YK9] gi|304343890|gb|EFM09730.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus curdlanolyticus YK9] Length = 957 Score = 68.9 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 8/159 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D+ETTG ++ D +I+IG V L + TF F+ P P +L GIT Sbjct: 1 MKFAVLDLETTGHQAE-DEMIQIGIVMLDEELNVTDTFSSFVRP-ATDIPPFITQLTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + D PS + ++ + A +AHN FD F+N L R P R +DT Sbjct: 59 NEMVADAPSVEDVLTDVVKLLGD--AVLVAHNVGFDAHFMNRALDRCGYSPFTGRR-LDT 115 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 + + R +P+ L ++ + +GIT H KH A D+ Sbjct: 116 IDLLRMLYPTLPSYQLGAVSEAFGIT--HERKHQADSDA 152 >gi|227486439|ref|ZP_03916755.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] gi|227235620|gb|EEI85635.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] Length = 1463 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 13/168 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL D I EIGAV ++ + T+ + P R + +++ GITD Sbjct: 449 VVFDIETTGLLKYRDAITEIGAVR-VENGEITETYNQLINPE-RILPEKIVEITGITDAM 506 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLDPSRIIDTL 127 L DKP + F DF ++ + N FDVGFI +R+ DP+ +DTL Sbjct: 507 LADKPKIDEVLPGFLDFCG--DSLIVGQNTDFDVGFIRENAKRLGLKFDPI----YLDTL 560 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR + L+ + ++ + I + H A D+ + ++IKM Sbjct: 561 PMARALFDDMGKFSLDKIARK--LDIPAFNHHRASDDARATAQIFIKM 606 >gi|254232344|ref|ZP_04925671.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|289750785|ref|ZP_06510163.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|124601403|gb|EAY60413.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|289691372|gb|EFD58801.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|323719091|gb|EGB28236.1| hypothetical protein TMMG_01471 [Mycobacterium tuberculosis CDC1551A] Length = 647 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 35/225 (15%) Query: 10 IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTG + D I EIGAV++ + F + P P+ ++L Sbjct: 46 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRLT 103 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + + P+ ++ F++F ++ +AHNA FD+GF+ A +R + P ++ Sbjct: 104 GITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDITWPQP-QV 160 Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176 + T+ +ARR + PS R L +L + + ++ H AL D+ DV ++ V Sbjct: 161 LCTMRLARRVLSRDEAPSVR--LAALARLF--AVASNPTHRALDDARATVDVLHALIERV 216 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 G N G T + E + +PN++ +R K R+ E L Sbjct: 217 G----NQGVHT-----YAELRSYLPNVTQAQRCK----RVLAETL 248 >gi|15841682|ref|NP_336719.1| hypothetical protein MT2247 [Mycobacterium tuberculosis CDC1551] gi|289754299|ref|ZP_06513677.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|308232063|ref|ZP_07414780.2| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis SUMu001] gi|308369651|ref|ZP_07418557.2| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis SUMu002] gi|308370940|ref|ZP_07423289.2| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis SUMu003] gi|308372166|ref|ZP_07427656.2| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis SUMu004] gi|308373349|ref|ZP_07431961.2| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis SUMu005] gi|308374520|ref|ZP_07436352.2| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis SUMu006] gi|308375805|ref|ZP_07668121.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis SUMu007] gi|308376938|ref|ZP_07668388.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis SUMu008] gi|308377937|ref|ZP_07480989.2| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis SUMu009] gi|308379142|ref|ZP_07485216.2| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis SUMu010] gi|308380293|ref|ZP_07489432.2| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis SUMu011] gi|308404461|ref|ZP_07493965.2| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis SUMu012] gi|13881937|gb|AAK46533.1| DNA polymerase III, epsilon subunit, putative [Mycobacterium tuberculosis CDC1551] gi|289694886|gb|EFD62315.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|308215084|gb|EFO74483.1| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis SUMu001] gi|308326837|gb|EFP15688.1| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis SUMu002] gi|308330190|gb|EFP19041.1| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis SUMu003] gi|308334026|gb|EFP22877.1| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis SUMu004] gi|308337834|gb|EFP26685.1| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis SUMu005] gi|308341594|gb|EFP30445.1| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis SUMu006] gi|308345002|gb|EFP33853.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis SUMu007] gi|308349313|gb|EFP38164.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis SUMu008] gi|308354021|gb|EFP42872.1| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis SUMu009] gi|308357963|gb|EFP46814.1| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis SUMu010] gi|308361897|gb|EFP50748.1| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis SUMu011] gi|308365560|gb|EFP54411.1| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis SUMu012] Length = 637 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 35/225 (15%) Query: 10 IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTG + D I EIGAV++ + F + P P+ ++L Sbjct: 36 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRLT 93 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + + P+ ++ F++F ++ +AHNA FD+GF+ A +R + P ++ Sbjct: 94 GITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDITWPQP-QV 150 Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176 + T+ +ARR + PS R L +L + + ++ H AL D+ DV ++ V Sbjct: 151 LCTMRLARRVLSRDEAPSVR--LAALARLF--AVASNPTHRALDDARATVDVLHALIERV 206 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 G N G T + E + +PN++ +R K R+ E L Sbjct: 207 G----NQGVHT-----YAELRSYLPNVTQAQRCK----RVLAETL 238 >gi|116672512|ref|YP_833445.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24] gi|116612621|gb|ABK05345.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24] Length = 406 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 110/256 (42%), Gaps = 37/256 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTGL N RI EI V + D + +NR ++ + P R P+ +HGI Sbjct: 7 VVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNR-WETLVNPQ-RDLGPQ--HIHGIRAAD 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 + P F I + + + +AHN FD F++ EL R + P + + T+ Sbjct: 63 ILHAPVFGDIAHDVMELLAGR--VLVAHNVHFDYRFVSHELGRAGLELPFEVHDCLCTMK 120 Query: 129 IARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +ARR P + L C +G+ + +H + A +H+LS+ Y++M G + F Sbjct: 121 LARRYLPGAGRSLKDCCDSFGLNLANAHSAGDDAEAAAHVLSN-YLRMDSGNPEW---FS 176 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL-----------------DEHDKTIQ 229 + +F P KR +P R E DEH+ + Sbjct: 177 ALDRAYFSSWPAVEP-----KRRQPALRRPAGEPQTHFLERLVNRLPEVAGPDEHNAYLA 231 Query: 230 TLGKNAIWDRYISSNQ 245 L + A+ DR IS ++ Sbjct: 232 MLDR-ALMDRQISVSE 246 >gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13] gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str. 13] Length = 870 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 14/159 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+E+TG+D D II+I A++L + F+ FL +K ++ +HG +DE Sbjct: 505 IVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFL--KNKKPVKDSYYVHGFSDEM 562 Query: 70 LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 L+ DK + EF ++ +++ + HN ++D+ + +EL+R N D Sbjct: 563 LQRIGEDK---EKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFKTFYD 617 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 TL I RR +P + N L +L K Y H+ H A+ D Sbjct: 618 TLDIYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 654 >gi|260205487|ref|ZP_05772978.1| hypothetical protein MtubK8_14429 [Mycobacterium tuberculosis K85] gi|289574877|ref|ZP_06455104.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289539308|gb|EFD43886.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length = 645 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 35/225 (15%) Query: 10 IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTG + D I EIGAV++ + F + P P+ ++L Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRLT 101 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + + P+ ++ F++F ++ +AHNA FD+GF+ A +R + P ++ Sbjct: 102 GITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDITWPQP-QV 158 Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176 + T+ +ARR + PS R L +L + + ++ H AL D+ DV ++ V Sbjct: 159 LCTMRLARRVLSRDEAPSVR--LAALARLF--AVASNPTHRALDDARATVDVLHALIERV 214 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 G N G T + E + +PN++ +R K R+ E L Sbjct: 215 G----NQGVHT-----YAELRSYLPNVTQAQRCK----RVLAETL 246 >gi|109898663|ref|YP_661918.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] gi|109700944|gb|ABG40864.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] Length = 769 Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 9/164 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG RI EIGAV+++D SK ++ + P R+ +L GI+++ Sbjct: 605 VVVDVETTGGCKPGHRITEIGAVKVID-SKVVDSWSSLINPE-RRVPHFITRLTGISNDM 662 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D P F + + F Q+ ++AHN FD GF E R+ + P + T+ Sbjct: 663 VEDAPLFCEVIDDLEAFM--QDCIFVAHNVNFDYGFFKLEYGRLERAFSMPK--LCTVRE 718 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 R+ +P S + L L K YG+++ + H AL D+ +++ I Sbjct: 719 MRKYYPGSPSYSLGKLSKEYGLSLDNH--HRALCDAQAAAELLI 760 >gi|147814790|emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera] Length = 340 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 68/142 (47%), Gaps = 13/142 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD ETTGL NDRIIEIG +L N TFQ + P +P +HGIT Sbjct: 137 IVFDTETTGLSRANDRIIEIGLQDL--GGGENSTFQTLVNPERIVPNPH---VHGITTYM 191 Query: 70 L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121 + D P + + + + W+AHN + FDV F+ E R N + Sbjct: 192 VNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNW 251 Query: 122 RIIDTLSIARRKHPSSRNDLNS 143 R +DTL +AR S+ +DL S Sbjct: 252 RFMDTLPLAREFIKSAGSDLPS 273 >gi|15609328|ref|NP_216707.1| hypothetical protein Rv2191 [Mycobacterium tuberculosis H37Rv] gi|148662008|ref|YP_001283531.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra] gi|148823398|ref|YP_001288152.1| hypothetical protein TBFG_12219 [Mycobacterium tuberculosis F11] gi|167969416|ref|ZP_02551693.1| hypothetical protein MtubH3_15860 [Mycobacterium tuberculosis H37Ra] gi|215403581|ref|ZP_03415762.1| hypothetical protein Mtub0_07840 [Mycobacterium tuberculosis 02_1987] gi|215411916|ref|ZP_03420690.1| hypothetical protein Mtub9_11341 [Mycobacterium tuberculosis 94_M4241A] gi|215427566|ref|ZP_03425485.1| hypothetical protein MtubT9_14751 [Mycobacterium tuberculosis T92] gi|215431125|ref|ZP_03429044.1| hypothetical protein MtubE_10707 [Mycobacterium tuberculosis EAS054] gi|215446420|ref|ZP_03433172.1| hypothetical protein MtubT_10948 [Mycobacterium tuberculosis T85] gi|219558170|ref|ZP_03537246.1| hypothetical protein MtubT1_13062 [Mycobacterium tuberculosis T17] gi|253798744|ref|YP_003031745.1| hypothetical protein TBMG_04035 [Mycobacterium tuberculosis KZN 1435] gi|254551229|ref|ZP_05141676.1| hypothetical protein Mtube_12318 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187187|ref|ZP_05764661.1| hypothetical protein MtubCP_14313 [Mycobacterium tuberculosis CPHL_A] gi|260201308|ref|ZP_05768799.1| hypothetical protein MtubT4_14636 [Mycobacterium tuberculosis T46] gi|289443698|ref|ZP_06433442.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289447819|ref|ZP_06437563.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289554022|ref|ZP_06443232.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289570307|ref|ZP_06450534.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289745464|ref|ZP_06504842.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis 02_1987] gi|294993576|ref|ZP_06799267.1| hypothetical protein Mtub2_03474 [Mycobacterium tuberculosis 210] gi|297634780|ref|ZP_06952560.1| hypothetical protein MtubK4_11686 [Mycobacterium tuberculosis KZN 4207] gi|297731771|ref|ZP_06960889.1| hypothetical protein MtubKR_11808 [Mycobacterium tuberculosis KZN R506] gi|298525683|ref|ZP_07013092.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313659105|ref|ZP_07815985.1| hypothetical protein MtubKV_11818 [Mycobacterium tuberculosis KZN V2475] gi|1722908|sp|Q10384|Y2191_MYCTU RecName: Full=Uncharacterized protein Rv2191/MT2247 gi|1237044|emb|CAA94260.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148506160|gb|ABQ73969.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra] gi|148721925|gb|ABR06550.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|253320247|gb|ACT24850.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289416617|gb|EFD13857.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289420777|gb|EFD17978.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289438654|gb|EFD21147.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289544061|gb|EFD47709.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289685992|gb|EFD53480.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis 02_1987] gi|298495477|gb|EFI30771.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|326903805|gb|EGE50738.1| DNA polymerase III [Mycobacterium tuberculosis W-148] gi|328458507|gb|AEB03930.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 645 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 35/225 (15%) Query: 10 IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTG + D I EIGAV++ + F + P P+ ++L Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRLT 101 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + + P+ ++ F++F ++ +AHNA FD+GF+ A +R + P ++ Sbjct: 102 GITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDITWPQP-QV 158 Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176 + T+ +ARR + PS R L +L + + ++ H AL D+ DV ++ V Sbjct: 159 LCTMRLARRVLSRDEAPSVR--LAALARLF--AVASNPTHRALDDARATVDVLHALIERV 214 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 G N G T + E + +PN++ +R K R+ E L Sbjct: 215 G----NQGVHT-----YAELRSYLPNVTQAQRCK----RVLAETL 246 >gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232] gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232] Length = 1469 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 93/174 (53%), Gaps = 17/174 (9%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +K++ ++FD+ETTGL + + I+E GAV L + + + Q F+ P G K P K+ G Sbjct: 407 DKLKFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKH-QFFIKPTG-KIPPAITKITG 464 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNE------QNAEWIAHNAKFDVGFINAELQRINKDPL 118 I+ + + D+ + S W+ E +++ +AHNA FD F+ ++ K L Sbjct: 465 ISQKMI-DETAIS------WEIALEKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSL 517 Query: 119 DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + IIDTL ++R +P+ + + L ++ KRY I H A D+ +L+ ++ Sbjct: 518 K-NPIIDTLEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIW 570 >gi|229818165|ref|ZP_04448447.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM 20098] gi|229784416|gb|EEP20530.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM 20098] Length = 186 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 7/166 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG+ DRIIEIGAV +++ + + P GR L GI+DE Sbjct: 20 VVVDLETTGISPARDRIIEIGAVR-VEHGTVTAEYSKLVNP-GRPVGGFITGLTGISDEM 77 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + ++ +F + +AHNA FD+ F+ R P IDTL + Sbjct: 78 VGNASPIEAVLPDFLAHLRPSDT-IVAHNANFDINFLYDNCMRTLGKPFS-YDFIDTLRL 135 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P R L L +R+G I+ +H L D+ + Y +M Sbjct: 136 SRALFPQERQHRLVDLIQRFG--IADEEEHRGLSDALQTVECYERM 179 >gi|218753913|ref|ZP_03532709.1| hypothetical protein MtubG1_10964 [Mycobacterium tuberculosis GM 1503] Length = 493 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 35/225 (15%) Query: 10 IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTG + D I EIGAV++ + F + P P+ ++L Sbjct: 36 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSIPPQIVRLT 93 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + + P+ ++ F++F ++ +AHNA FD+GF+ A +R + P ++ Sbjct: 94 GITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDITWPQP-QV 150 Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176 + T+ +ARR + PS R L +L + + ++ H AL D+ DV ++ V Sbjct: 151 LCTMRLARRVLSRDEAPSVR--LAALARLFA--VASNPTHRALDDARATVDVLHALIERV 206 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 G N G T + E + +PN++ +R K R+ E L Sbjct: 207 G----NQGVHT-----YAELRSYLPNVTQAQRCK----RVLAETL 238 >gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM 14863] gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM 14863] Length = 1475 Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 20/173 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V DIETTG D IIE+GAV E++D +FQ F+ P + PE KL Sbjct: 455 VVLDIETTGFSPIGDDIIELGAVRCRGGEIVD------SFQSFVRPT-KPVPPEVQKLTN 507 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRI 123 IT + L+ P + F+ F + A +AHNA+FD F+ Q+ + ++ +P + Sbjct: 508 ITPDMLEGAPEAAEALRAFFQFVGD--AIVVAHNAQFDYSFLRYHRQKYLGEEFANP--V 563 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DTL++AR P R+ L +L K + + H A D+ + V +K++ Sbjct: 564 LDTLTLARAVLPHMRSHSLAALTKELQVPLV--DHHRADADAKTAAMVLMKLL 614 >gi|227501930|ref|ZP_03931979.1| possible exonuclease [Corynebacterium accolens ATCC 49725] gi|227077314|gb|EEI15277.1| possible exonuclease [Corynebacterium accolens ATCC 49725] Length = 1118 Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 11/176 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG S DR+IEIG V LLD+++ T++ + P +++ P + +H IT Sbjct: 6 RYAVVDFETTGFGS-TDRVIEIGVV-LLDHNREVESTWETLVQP--QRDIPNSF-VHRIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIID 125 + D P F + EF++ N + +AHNA F+V F+ E + P + ++D Sbjct: 61 PTDVVDAPLFGEVAGEFFELLNGRTV--VAHNAPFEVRFLQREFSNLGVAWPNYGAWVVD 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 T + ++ +P L + GIT + H AL D+ ++++ +++ G+ + Sbjct: 119 TKRLFQQTYPGEGTTLEHALEVVGIT--NARPHSALADALATAELFAQLVSQGTDV 172 >gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 574 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 13/184 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG+ + I EIGAV++ + F + P G P L GITD Sbjct: 22 VVFDLETTGVSAGEHAITEIGAVKVRG-GEVLGEFGTLVDP-GSPIPPFISVLTGITDTM 79 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P S+ F +F + +AHNA FD+GFI A + P ++DT+ + Sbjct: 80 VVAAPKIESVLPSFLEF--AEGTTLVAHNAGFDLGFIKAACA-AHGYPPPAHPVVDTVVL 136 Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 AR+ + + L++L + + T +H AL D+ DV ++ +FG Sbjct: 137 ARKLLTRDEAPNCKLSTLARIFSKT---EPRHRALADAQATVDVLHALLERAG--SFGVH 191 Query: 187 TNED 190 T E+ Sbjct: 192 TLEE 195 >gi|119476123|ref|ZP_01616475.1| exonuclease [marine gamma proteobacterium HTCC2143] gi|119450750|gb|EAW31984.1| exonuclease [marine gamma proteobacterium HTCC2143] Length = 216 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 9/169 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV L +R FQ + P G++ S GIT+ Sbjct: 7 VVLDFETTGLSPDAGDRAIEIGAVRLESGEVVDR-FQALMNP-GQRVSGFIEDHTGITNT 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + +F DF N +AHNA FD F++AEL RI++ +L Sbjct: 65 MLANSDHSAKVMHQFADFIEGHN--LVAHNASFDKRFLDAELARISRSY--SGDFSCSLL 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +RR + + N L +L K GI S H AL DS + +++ ++ Sbjct: 121 ASRRIYQQAPNHQLGTLIKYTGIA-STGDFHRALYDSEMTVKLWLHLLA 168 >gi|229820392|ref|YP_002881918.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM 12333] gi|229566305|gb|ACQ80156.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM 12333] Length = 590 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 20/201 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG D I EIGAV + + P GR P L GIT+ Sbjct: 33 VVVDLETTGGSPNADAITEIGAVRVRG-GVVEGELGTLVDP-GRSIPPTITVLTGITNAM 90 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSRIIDT 126 + P + F +F + A +AHNA+FD GF+ +R+ PL ++DT Sbjct: 91 VIGAPPIEEVLPSFLEFAH--GAVLVAHNARFDTGFLRVAAERMGLTWPKPL----VVDT 144 Query: 127 LSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + +ARR + + + L SL + + +++ H AL D+ DV ++ + + Sbjct: 145 VQLARRVVSRDEAPNHRLGSLARLFHASVT--PDHRALTDARATVDVLHGLLARMAPLGV 202 Query: 184 G----FKTNEDRFFKEEKKTV 200 +T D E ++ V Sbjct: 203 THLEDLRTAGDSVPPERRRKV 223 >gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91] Length = 346 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V +++ + T+ T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAAEHRITEIGVV-VVNANGTS-TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I ++ + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S R H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALAPSAR--HRALADADLIWQFWQKL 172 >gi|308049989|ref|YP_003913555.1| RNAse T [Ferrimonas balearica DSM 9799] gi|307632179|gb|ADN76481.1| RNAse T [Ferrimonas balearica DSM 9799] Length = 222 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + + ++T + P G P AL+ +G Sbjct: 20 VVIDVETAGFNAQTDALLEIAAVTLKMDEQGWLQPDQTIHFHVAPFEGANLEPAALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFFNE-QNAEW------IAHNAKFDVGFINAELQR--I 113 ITD F L+ S SE + + Q A +AHNA FD F+NA +R + Sbjct: 80 ITDPFSALRGAVSEREALSEIFKLVRKGQKAAGCNRSIIVAHNATFDQSFVNAASERTKM 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L C+ GI ++ H AL D+ ++++ Sbjct: 140 KRVPFHPFGTFDTAALSGLAL--GQTVLAKACRAAGIPFDNKEAHSALYDTQRTAELFCY 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|194334228|ref|YP_002016088.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271] gi|194312046|gb|ACF46441.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271] Length = 180 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 21/170 (12%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLH 63 R I D+ETTGL + DR+IE+ AV ++ N + C N+P K+H Sbjct: 12 RVIAVDVETTGLSPRRGDRVIEVAAVAIV-----NGVIEEHFCCLINVNAPIPTVVQKIH 66 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E L + +++ EF F IAHNA FD+ FI EL+ + L+ S+ Sbjct: 67 GITPELLAGEKPPEAVWPEFLKFIGSN--ILIAHNAPFDISFIRNELRFLGLSLLNGSQC 124 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRY------GITISHRSKHGALLDSHL 166 TL+ +R+K P +N L ++ + GI + HR+ ALL + + Sbjct: 125 --TLAFSRKKFPQLKNHKLENVARHVLGGMPKGIKL-HRASGDALLTAMI 171 >gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243] gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243] Length = 381 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 91/163 (55%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V +++ + T+ T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAAEHRITEIGVV-VVNANGTS-TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I ++ + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|290580136|ref|YP_003484528.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025] gi|254997035|dbj|BAH87636.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025] Length = 300 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 10/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIET GLD + IIEIGAV+ +D S+ F +L + + KL GI+ E Sbjct: 132 VVIDIETDGLDENENSIIEIGAVK-IDPSQLEE-FN-YLVKYDKILPKQISKLTGISQEL 188 Query: 70 L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L +D + EF +F N + + + FD+ FIN +L+ +N+ PL +R+ D + Sbjct: 189 LDRDGKDLQVVLQEFLNFIG--NHDLVGYGINFDIKFINKKLKELNQ-PLLKNRVYDLMQ 245 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 A+++ N L ++ K Y I H AL DS L+ D+ KM Sbjct: 246 YAKKEKLFLDNYKLQTVLKAY--EIEDEVPHRALHDSKLIYDLSTKM 290 >gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens B str. ATCC 3626] Length = 870 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 14/159 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+E+TG+D D II+I A++L + F+ FL +K ++ +HG +DE Sbjct: 505 IVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFL--KNKKPVKDSYYVHGFSDEM 562 Query: 70 LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 L+ DK + EF ++ +++ + HN ++D+ + +EL+R N D Sbjct: 563 LQRIGEDK---EKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYD 617 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 TL I RR +P + N L +L K Y H+ H A+ D Sbjct: 618 TLDIYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 654 >gi|126737494|ref|ZP_01753224.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. SK209-2-6] gi|126720887|gb|EBA17591.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. SK209-2-6] Length = 465 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 10/179 (5%) Query: 2 IRKNKMRKI---VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSP 57 +R +R + VFD ETTGL D I++IGA+ +++ N F+ + P G Sbjct: 248 LRTRPLRSLSFTVFDTETTGLLPHKDEIVQIGALRVVNGRLVNGEGFETLVNP-GFDIPA 306 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + +HG+T E +++ P + + F F +++ +AHNA FD+ F+ + D Sbjct: 307 ASTAVHGVTTEMVRNSPMIKTAGAAFHQFC--KDSVLVAHNAPFDIAFLRRHAKSSGVD- 363 Query: 118 LDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++ +S + L++LC R I I +H A+ D+ ++ ++M+ Sbjct: 364 -WNHMVLDTVLLSAVIFGASVPHTLDALCDRLEINIPEALRHTAMGDAQATAEALLRML 421 >gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Veillonella atypica ACS-134-V-Col7a] gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Veillonella atypica ACS-134-V-Col7a] Length = 861 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 6/155 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+E+TG D+ DRII+I A+ + F+ F+ P K+ + +HG TD + Sbjct: 495 VVYDVESTGTDTTQDRIIQIAAMRIDKDGNEIERFERFINPG--KSVGTSQLVHGFTDAY 552 Query: 70 LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + S + F +F N N + HN +D+ ++ EL R N + DTL Sbjct: 553 LAEHGESPKVVLEAFKEFSN--NRIIVGHNVNYDISILSHELARHNLGEPQFKAVYDTLD 610 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 I RR +P+ N +Y I+H H A+ D Sbjct: 611 IFRRFYPTLENHKLGFLSKY-FPINHTPTHNAMDD 644 >gi|229825431|ref|ZP_04451500.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC 49176] gi|229789994|gb|EEP26108.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC 49176] Length = 223 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 9/158 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG+ + D++IEI A+++ + +T F + P R A +++GITDE + Sbjct: 19 VFDLETTGVSPQTDKVIEISAIKVRN-GQTVGEFSSLVNPM-RGIPYGATRVNGITDEMV 76 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP F + +F DF ++ + HN FD+ FI+ + + + L + IDTL I Sbjct: 77 ADKPVFEKVLGDFLDFV--EDDILVGHNIHDFDMKFIHRDCEAFFRMFLG-NDYIDTLPI 133 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHL 166 AR+ P + L L Y I+I+ H AL D + Sbjct: 134 ARKCLPQLGHHRLTDLALYYKISIN--GAHRALNDCRM 169 >gi|52080748|ref|YP_079539.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus licheniformis ATCC 14580] gi|52786119|ref|YP_091948.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus licheniformis ATCC 14580] gi|319645294|ref|ZP_07999527.1| DinG protein [Bacillus sp. BT1B_CT2] gi|52003959|gb|AAU23901.1| ATP-dependent helicase [Bacillus licheniformis ATCC 14580] gi|52348621|gb|AAU41255.1| DinG [Bacillus licheniformis ATCC 14580] gi|317393103|gb|EFV73897.1| DinG protein [Bacillus sp. BT1B_CT2] Length = 930 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 95/174 (54%), Gaps = 11/174 (6%) Query: 5 NKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62 N R +V D+ETTG K DRII+I AV + + T R F ++ PN + P + +L Sbjct: 2 NNQRYVVIDVETTGNSPKKGDRIIQIAAVVIENGQITER-FSKYVNPN--QPIPAFIEQL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI++E ++++ FS+I + ++ + ++ +IAHN FD+ F+ ELQ ++ S Sbjct: 59 TGISNEMVENEEPFSAIAEDIFELLH--DSCFIAHNIHFDLAFVKHELQLAGFGEIECS- 115 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++R P L L + + I H + H A D+ + + +++ MM Sbjct: 116 VLDTVELSRIVFPGFDGYKLTELSEE--LQIRHENPHRADSDAEVTALIFLHMM 167 >gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] Length = 423 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 13/168 (7%) Query: 10 IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67 IVF D+ETTG + RI E+G VE+ T + V + ++ P ++ L GIT+ Sbjct: 54 IVFVDLETTGGSTSEHRITEVGVVEVGPAGVTRWSSLV----DPQQPIPSFIQQLTGITN 109 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P+F +I E + N + ++AHNA FD GF+ E +R DP ++ T+ Sbjct: 110 AMVRGAPTFDAIAPELFARLNGKL--FVAHNASFDRGFLRGEFRRAGIS-FDPD-VLCTV 165 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R PS R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 166 RLSRALFPSEKRHGLDALVERHSLVPSDR--HRALADADLIWQFWQRL 211 >gi|330444105|ref|YP_004377091.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58] gi|328807215|gb|AEB41388.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58] Length = 249 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 5/149 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D E TGLD K DRIIEI V + + + + + P ++ S E+ ++H I++ Sbjct: 10 VCLDCEMTGLDVKKDRIIEIAIVRF-TFERILDSIEFLINPE-KEVSIESQRIHHISNAM 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LK++P F++++ + F + + + H+ FD+ + E++R+ + +IDTL + Sbjct: 68 LKNQPKFAAVYPKIKAFLKDDD-NIVGHSVGFDLQVLAQEVERLGETFPTKYHVIDTLRL 126 Query: 130 ARRKHPSSRNDLNSLCKRYGITI--SHRS 156 A+ S N L SL + + +HR+ Sbjct: 127 AKEYGDSPNNSLESLAVHFNVPYDGNHRA 155 >gi|170726548|ref|YP_001760574.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908] gi|169811895|gb|ACA86479.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908] Length = 205 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 21/183 (11%) Query: 1 MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PE 58 M+ IV D ETTGL ++ DR IEIGAV+L D + TFQ + P R S E Sbjct: 1 MLNPASNSAIVLDFETTGLSPNQGDRAIEIGAVKLEDGVVVD-TFQALMNPGFRITSFIE 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + GIT++ L + F DF + N +AHNA FD F++AEL IN+ Sbjct: 60 SYT--GITNQMLSTAAPCEVVMDRFADFIHGSN--LVAHNASFDQRFLDAELSLINRH-- 113 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK------HGALLDSHLLSDVYI 172 ++ IARR + + N + G ++ R H AL DS + + +++ Sbjct: 114 YTGEFACSMLIARRIYQEAPN------HKLGGLVAFRQIENDGVFHRALADSEMTAKLWL 167 Query: 173 KMM 175 M+ Sbjct: 168 TMI 170 >gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens D str. JGS1721] gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens D str. JGS1721] Length = 876 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 14/159 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+E+TG+D D II+I A++L + F+ FL +K ++ +HG +DE Sbjct: 511 IVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFL--KNKKPVKDSYYVHGFSDEM 568 Query: 70 LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 L+ DK + EF ++ +++ + HN ++D+ + +EL+R N D Sbjct: 569 LQRIGEDK---EKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYD 623 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 TL I RR +P + N L +L K Y H+ H A+ D Sbjct: 624 TLDIYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 660 >gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens ATCC 13124] gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens ATCC 13124] Length = 870 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 14/159 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+E+TG+D D II+I A++L + F+ FL +K ++ +HG +DE Sbjct: 505 IVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFL--KNKKPVKDSYYVHGFSDEM 562 Query: 70 LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 L+ DK + EF ++ +++ + HN ++D+ + +EL+R N D Sbjct: 563 LQRIGEDK---EKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYD 617 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 TL I RR +P + N L +L K Y H+ H A+ D Sbjct: 618 TLDIYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 654 >gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101] gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101] Length = 870 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+E+TG+D D II+I A++L + F+ FL +K+ ++ +HG +DE Sbjct: 505 IVFDVESTGVDVTEDEIIQIAAIKLNKNVEVVDKFEKFL--KNKKSVKDSYYVHGFSDEM 562 Query: 70 LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ + EF ++ +++ + HN ++D+ + +EL+R N DTL Sbjct: 563 LQRIGEEKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYDTLD 620 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 I RR +P + N L +L K Y H+ H A+ D Sbjct: 621 IYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 654 >gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens C str. JGS1495] Length = 876 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 14/159 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+E+TG+D D II+I A++L + F+ FL +K ++ +HG +DE Sbjct: 511 IVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFL--KNKKPVKDSYYVHGFSDEM 568 Query: 70 LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 L+ DK + EF ++ +++ + HN ++D+ + +EL+R N D Sbjct: 569 LQRIGEDK---EKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFYD 623 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 TL I RR +P + N L +L K Y H+ H A+ D Sbjct: 624 TLDIYRRFYPGNINYKLENLSKVYD--TKHKPSHDAMDD 660 >gi|86145733|ref|ZP_01064062.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222] gi|218676919|ref|YP_002395738.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32] gi|85836432|gb|EAQ54561.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222] gi|218325187|emb|CAV27099.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32] Length = 207 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL + DR IEIGAV+L++ + TFQ + P G + S GI++ Sbjct: 10 IVLDFETTGLSPNMGDRAIEIGAVKLVNGEVVD-TFQQLMNP-GFRVSGFIESYTGISNR 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L S S + EF +F Q ++ +AHNA FD F++AEL I +D + ++ Sbjct: 68 MLSTAASCSEVMDEFANFI--QGSQLVAHNASFDKRFLDAELDFIGRDY--TGKFACSML 123 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR + + L L + I + + H AL DS + + +++ M+ Sbjct: 124 IARRLIQDAPTHKLGDLVRFKNID-NDGTFHRALADSEMTARLWLLMI 170 >gi|312140182|ref|YP_004007518.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S] gi|311889521|emb|CBH48838.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S] Length = 577 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 24/171 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHG 64 +V D+ETTG S++D I EIGAV++ R +V L GR P ++L G Sbjct: 30 VVVDLETTGGSSESDAITEIGAVKV-------RGGEVLGELGTLVDPGRAIPPYIVELTG 82 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT ++ P ++ F +F A +AHNA FDVGF+ A R P +++ Sbjct: 83 ITTAMVRTAPRIDTVLPAFLEFAG--GAVLVAHNAGFDVGFLKAAAAR-QGLPWPKFQVL 139 Query: 125 DTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 T+ +ARR + PS + + T +HR AL D+ DV Sbjct: 140 CTVKLARRVLGRDEAPSVKLSALAALLGADTTPTHR----ALDDARATVDV 186 >gi|320353730|ref|YP_004195069.1| DNA polymerase III, subunit epsilon [Desulfobulbus propionicus DSM 2032] gi|320122232|gb|ADW17778.1| DNA polymerase III, epsilon subunit [Desulfobulbus propionicus DSM 2032] Length = 218 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTG ++ DR IE+GAV + ++ + FQ + P G S +L GI+++ Sbjct: 7 IVLDFETTGHSPNRGDRPIEVGAVRI-EHDRIVDRFQALMNP-GFTISWFIERLTGISND 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + + F D+ + +AHNA FD F++AEL I + +P + T+ Sbjct: 65 LIAHAPPCEEVMNRFADWMGD--LPLVAHNAGFDRAFLDAELALIGRHQSNP--MACTVL 120 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +RR P S N L +L GI + + H AL D+ + V+I M Sbjct: 121 ASRRLFPESPNHKLATLVNHLGI-FTDGTFHRALADAEMTGHVWIAM 166 >gi|227536604|ref|ZP_03966653.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] gi|227243681|gb|EEI93696.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] Length = 469 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 9/149 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69 + DIETTG + N I EI A+ L D + ++Q + P+ K P ++ L GIT E Sbjct: 15 IVDIETTGGYAANSGITEI-AIYLHDGHQVIDSYQTLINPH--KEIPYHIQMLTGITPEM 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D PSF + ++ + F +N ++AHN FD FI A L+ P + T+ + Sbjct: 72 LTDAPSFEDVAADIYSFL--ENKVFVAHNVNFDYSFIYAHLKACGYQWKSPK--LCTVRL 127 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSK 157 AR S L +LC+R I IS R + Sbjct: 128 ARNIFKGFSSYSLGNLCQRLDIPISDRHR 156 >gi|325676936|ref|ZP_08156608.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707] gi|325552236|gb|EGD21926.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707] Length = 577 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 25/178 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHG 64 +V D+ETTG S++D I EIGAV++ R +V L GR P ++L G Sbjct: 30 VVVDLETTGGSSESDAITEIGAVKV-------RGGEVLGELGTLVDPGRAIPPYIVELTG 82 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT ++ P ++ F +F A +AHNA FDVGF+ A R P +++ Sbjct: 83 ITTAMVRTAPRIDTVLPAFLEFAG--GAVLVAHNAGFDVGFLKAAAAR-QGLPWPKFQVL 139 Query: 125 DTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 T+ +ARR + PS + + T +HR AL D+ DV + ++G Sbjct: 140 CTVKLARRVLGRDEAPSVKLSALAALLGADTTPTHR----ALDDARATVDV-LHALIG 192 >gi|218134802|ref|ZP_03463606.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC 43243] gi|217990187|gb|EEC56198.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC 43243] Length = 237 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 19/170 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + DRIIE+GA + ++ + F F+ P SP L GITDE Sbjct: 6 VAIDLETTGTNPAEDRIIEVGAAK-VECGRVVSIFSTFVNPQ-ISISPRITSLTGITDED 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-----NAELQRINKDPLDPSRII 124 + P + I ++ + ++ + HN FD FI N++L+ + I Sbjct: 64 VAGAPVIADIIADMIAY--TKDVPILGHNVIFDYSFIKKAAANSKLEYAKEG-------I 114 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVY 171 DTL IARR P +L +LC+ + I SHR+ A+ S L +Y Sbjct: 115 DTLKIARRILPDVPHKNLPALCEHFKIDPGKSHRALDDAISASKLYYALY 164 >gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547] gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus sedentarius DSM 20547] Length = 584 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG S + I E GAV++ FQ + P P L GIT Sbjct: 28 VVFDLETTGTSSADSEITEFGAVKVRGGEVVGE-FQTLVRPAA-GIPPYIQVLTGITTAM 85 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + PS + F +F +A +AHNA+FD F+ +R + P + ++DT+ + Sbjct: 86 VSAAPSIEQVLPNFLEFVG--DAVLVAHNARFDTAFVRRACERTGR-PAPGNPVLDTVHL 142 Query: 130 ARRKHPSSR---NDLNSLCK--RYGITISHRS 156 AR+ P + L++L R T SHR+ Sbjct: 143 ARQLLPRPEVPNHKLSTLAAYFRAETTPSHRA 174 >gi|266619529|ref|ZP_06112464.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] gi|288868940|gb|EFD01239.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] Length = 235 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGLD K D+IIEIGAV ++ + F+ F+ P R + L GI D+ Sbjct: 6 VAVDLETTGLDPKRDKIIEIGAVR-IEAGEITAEFESFVNPY-RMLEAKTRTLTGIRDQD 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + F +F E + H FD F+ +N+ IDTL++ Sbjct: 64 VVHAPGIEEVLPVFLNFAGE--LPLLGHRIIFDYSFLKRAA--VNQGESFSRAGIDTLTL 119 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 AR P+ R +L + C +G I R H A+ D+ +Y M Sbjct: 120 ARLFMPAEERKNLKAACGWFG--IDQRETHRAMADAVAAHQLYQAM 163 >gi|126437831|ref|YP_001073522.1| DNA polymerase III subunit epsilon [Mycobacterium sp. JLS] gi|126237631|gb|ABO01032.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS] Length = 330 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 11/162 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RI+ + A+ + D ++ L P P +HG+T E L Sbjct: 19 VVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPG---VDPGPTHVHGLTAEML 75 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 + P F I ++ + + +AHN FD F+ AE + + + P+D ++ T+ + Sbjct: 76 EGAPRFGDIVADLAELLRGRT--LVAHNVGFDYSFLTAEAELVGAELPID--SVMCTVEL 131 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ARR + N L +L +G + H AL D+ +L+ + Sbjct: 132 ARRLDLGTENLRLETLAAHWG--VPQLKPHDALDDAQVLAQI 171 >gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1450 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFDIETTG ND+IIEIGAV++ + + F F+ P ++ P + +L I ++ Sbjct: 438 VVFDIETTGFSPVNDKIIEIGAVKIKN-GEVIDNFSHFVNP--ERSIPYVITELTSINND 494 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D + + +F +F ++ +AHNA FD GFI + + D + S I+DT+ Sbjct: 495 MVRDAETIEILLPKFMEFC--ADSVLVAHNAAFDTGFIKKNCRDLGID-FNYS-IMDTVP 550 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +AR P + LN + K GI++ + H A+ D+ +++ +K Sbjct: 551 LARFLCPDLKKVKLNLVAKHLGISLDNH--HRAVDDAKCTAEILLK 594 >gi|168187912|ref|ZP_02622547.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum C str. Eklund] gi|169294244|gb|EDS76377.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum C str. Eklund] Length = 1441 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 9/164 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG S+ D+IIE GAV++ + + + +F F+ P K +L IT+E Sbjct: 429 VVFDLETTGFSSQYDKIIEFGAVKIKNGNIID-SFSAFVNPE-MKIPYRITELTSITNED 486 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD + + +F F ++ +AHN+ FD+ FI +N + ++DT+ + Sbjct: 487 VKDAETIDKVLPKFMKF--AEDTVLVAHNSNFDMSFIRKNCNDLNIEC--NYTVMDTIPL 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 A+ P R LN++ K G+++ + H A+ D+ D+ + Sbjct: 543 AKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATGDILV 584 >gi|134093833|ref|YP_001098908.1| putative DNA polymerase/helicase [Herminiimonas arsenicoxydans] gi|133737736|emb|CAL60781.1| putative DNA-polymerase/ribonuclease/exonuclease [Herminiimonas arsenicoxydans] Length = 193 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 12/169 (7%) Query: 9 KIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 K++F D+ETTG + NDRI EIG V + +R + F+ P GR L GI+D Sbjct: 6 KLIFIDLETTGANLINDRITEIGIVTVNADGDIDR-WSSFVNP-GRPIPSFIQDLTGISD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126 + P+F ++ + ++ +IAHNA+FD GF++ L R +D ++ T Sbjct: 64 RMVATAPTFETLADTVRERL--EDGLFIAHNARFDYGFLHHALARAGHALSID---VLCT 118 Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++RR P R++L++L R+G+ ++H AL D+ LL ++ K+ Sbjct: 119 VKLSRRFFPEEKRHNLDTLIARHGLV--PEARHRALADADLLWQLWEKL 165 >gi|238026493|ref|YP_002910724.1| exonuclease, DNA polymerase III subunit epsilon family/GIY-YIG catalytic domain-containing protein [Burkholderia glumae BGR1] gi|237875687|gb|ACR28020.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia glumae BGR1] Length = 381 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 12/164 (7%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFLK 71 D+ETTG + RI EIG VE+ + + + C + P ++ L GITD ++ Sbjct: 23 DLETTGGSATEHRITEIGVVEVGPNGVSTWSSLIDPC----QPIPAFIQQLTGITDAMVR 78 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 PSF+SI + + + +IAHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 79 GAPSFASIAAAL--YARLEGRFFIAHNASFDRGFLRAEFERAGY-AFNPD-VLCTVRLSR 134 Query: 132 RKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + + ++H AL D+ L+ + ++ Sbjct: 135 ALFPRESRHGLDALIERHALVPN--ARHRALADADLVWQFWRRL 176 >gi|154686487|ref|YP_001421648.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus amyloliquefaciens FZB42] gi|154352338|gb|ABS74417.1| DinG [Bacillus amyloliquefaciens FZB42] Length = 928 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 9/173 (5%) Query: 5 NKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN + P +L Sbjct: 2 NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-QAIPPFIEQLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+ ++++ F ++ E + + A ++AHN FD+GF+ EL + L + Sbjct: 60 GISSGMVENELPFEAVAEEIFHLLD--GAYFVAHNIHFDLGFVRHELSEAGYE-LPDCEV 116 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ ++R P L LC + I H H A D+ + V++ ++ Sbjct: 117 LDTVELSRIVFPGFEGYKLGELCAE--LNIVHDRPHRADSDAEVTGLVFLDIL 167 >gi|300933403|ref|ZP_07148659.1| exonuclease, RNase T and DNA polymerase III [Corynebacterium resistens DSM 45100] Length = 1144 Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 7/145 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+ETTG SK DR+IEIG V L RT++ + PN ++ P + +H +T Sbjct: 6 RYAVIDLETTGF-SKTDRVIEIGVVLLDQAGNVERTWETIVQPN--RDIPNSF-VHKLTP 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126 L P F I E + + + IAHNA FD+ F+ +E +RI P + + DT Sbjct: 62 SHLVHAPLFEEIAEELAEILHGRTI--IAHNAPFDIRFLTSEFERIGVALPAYGAWVHDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGIT 151 L + R+ P + L + K GIT Sbjct: 120 LPLCRQCFPGTNGSLEKVTKLLGIT 144 >gi|90414417|ref|ZP_01222394.1| putative DNA polymerase III [Photobacterium profundum 3TCK] gi|90324530|gb|EAS41086.1| putative DNA polymerase III [Photobacterium profundum 3TCK] Length = 214 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 15/171 (8%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL ++ DR IEIGAV L++ K FQ + P G + S GIT+ Sbjct: 16 IVLDFETTGLSPTQGDRAIEIGAV-LMENGKVVDRFQKLMNP-GFRVSSFIEGYTGITNN 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ + + +F DF + N +AHNA FD F++AEL I + ++ Sbjct: 74 MLRTAAPCNEVMDQFTDFIGDYN--LVAHNASFDKRFLDAELDIIKRSY--GGEFACSML 129 Query: 129 IARRKHPSSRND-LNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMM 175 IARR + ++ N L SL I + HR AL DS + + ++++M+ Sbjct: 130 IARRLYQNAPNHKLGSLVAYKNIDHDGVFHR----ALADSEMTAKLWLQML 176 >gi|312869960|ref|ZP_07730099.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris PB013-T2-3] gi|311094545|gb|EFQ52850.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris PB013-T2-3] Length = 949 Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 27/191 (14%) Query: 1 MIRKNKMRK----------IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLC 49 M +KNK R V D+ETTG + DRII+IG V + D N F+ + Sbjct: 1 MQKKNKRRTPKRDRTAPIYSVVDLETTGTSVNHGDRIIQIGCVLVQDGQVINH-FETKVN 59 Query: 50 PNGRKNSPEAL-KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 P R+ P A+ +L GI D ++ P F + + ++AHN FD F+NA Sbjct: 60 P--REKIPRAVVQLTGIQDRDVRKAPLFEDVAGTIYSLLT--GTTFVAHNVNFDFPFLNA 115 Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDS 164 EL+R PL P + IDT+++++ P++++ DL S + I H H A+ D+ Sbjct: 116 ELERAGYPPL-PIKAIDTVTLSQILLPTAKSFRLRDLTS-----SLQIEHDHPHSAVSDA 169 Query: 165 HLLSDVYIKMM 175 + + + ++ Sbjct: 170 EATASLLVDLL 180 >gi|300173484|ref|YP_003772650.1| DNA polymerase III subunit alpha [Leuconostoc gasicomitatum LMG 18811] gi|299887863|emb|CBL91831.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc gasicomitatum LMG 18811] Length = 1437 Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL + D+IIE+ AV+ + F ++ P G S KL ITD Sbjct: 420 VAFDLETTGLSAVTDKIIELSAVK-MQLGNVIEKFSEYINP-GFPLSDFTTKLTSITDTM 477 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +I F + E A I HN FD+GF+NA R +++ + + +IDTL Sbjct: 478 VAHTDTEENIIKRFRQWVGE--AVLIGHNVTFDIGFMNAAYARYSQESI-TNPVIDTLPF 534 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 R +P ++ L ++ KR+ I + H A+ D+ Sbjct: 535 TRWLYPDYKSYRLGTIAKRFNINLEQ--AHRAIFDA 568 >gi|227485452|ref|ZP_03915768.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Anaerococcus lactolyticus ATCC 51172] gi|227236582|gb|EEI86597.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Anaerococcus lactolyticus ATCC 51172] Length = 295 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+ D+ETTGLD NDRIIEIGA+++ K N+ + + + K S + + GI+DE Sbjct: 130 IIIDLETTGLDPINDRIIEIGAIKI---GKENKEYSSIIWQD-IKLSEKISNITGISDED 185 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K + +EF DF E + +N FD+ FIN L+R K P + D + Sbjct: 186 IKKGKDEKNAINEFIDFIGEDTL--VGYNINFDIKFINESLKRQEK-PKIKNMTYDVMQY 242 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +N L ++ K YG I+ H AL D ++ + K+ Sbjct: 243 VKNDKLFLKNYKLETVIKEYG--INKNVPHRALEDVKIIQKLIAKL 286 >gi|82523686|emb|CAI78468.1| Rad3-related DNA helicases [uncultured candidate division WS3 bacterium] Length = 965 Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 8/183 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ETTG+DS+ DRIIE+GAV ++D + TF+ F+ P G + + L GI+D + Sbjct: 31 LDLETTGVDSRVDRIIEVGAVRVVD-GRVADTFESFVNP-GCPIPSDIVHLTGISDADVA 88 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P+ + +F + +AH+A FD GF++ + + DTL + R Sbjct: 89 GAPTIDEVLPRIIEFIG--GSPIVAHHAPFDTGFLDEAAGGRPGLLVGRGGVFDTLPLTR 146 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191 P N + R+ + RS H A D+ +SD+++ ++ QI T DR Sbjct: 147 ALLPRLPNHRLATAARFFDIPTGRS-HRATDDARAVSDLFLALLGVLDQIG---ATVLDR 202 Query: 192 FFK 194 ++ Sbjct: 203 MYR 205 >gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6] gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6] Length = 861 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 6/155 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+E+TG D+ DRI++I A+ + F+ F+ P K+ + +HG TD + Sbjct: 495 VVYDVESTGTDTTEDRIVQIAAMRIDKDGNEIERFERFINPG--KSVGTSQLVHGFTDAY 552 Query: 70 LKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + S + F +F N N + HN +D+ ++ EL R N + DTL Sbjct: 553 LAEHGESPKVVLEAFKEFSN--NRIIVGHNVNYDISILSHELARHNLGEPQFKAVYDTLD 610 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 I RR +P+ N +Y I+H H A+ D Sbjct: 611 IFRRFYPTLENHKLGFLSKY-FPINHTPTHNAMDD 644 >gi|237733311|ref|ZP_04563792.1| 3'-5' exonuclease [Mollicutes bacterium D7] gi|229383692|gb|EEO33783.1| 3'-5' exonuclease [Coprobacillus sp. D7] Length = 443 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 24/171 (14%) Query: 13 DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEA------LKLHGI 65 D+ET + +N+ I IG + + D T + F V PEA ++L GI Sbjct: 9 DVETP--NYQNNSISSIGVINVDGDGVVTTKYFLV---------DPEAHFDRFNIELTGI 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E + D+P+F ++SE +F N+ +AHNA FD+G I+A LQR + P+ P Sbjct: 58 TPEMVADQPNFKEVWSEIEPYFT--NSLVVAHNAVFDLGVISACLQRYDL-PIFPIFYTC 114 Query: 126 TLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T I+R K PS+ LN L Y +T+ + H AL DS +++ ++ Sbjct: 115 TYRISRALKIPSNSYKLNDLSSYYHVTLDNH--HNALADSKACMEIFYYLL 163 >gi|323701749|ref|ZP_08113420.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum nigrificans DSM 574] gi|323533285|gb|EGB23153.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum nigrificans DSM 574] Length = 930 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 14/168 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 + D+ETTGLD +D IIEIG V+++D + FQ + P G P +K L G+ D+ Sbjct: 6 VALDLETTGLDCWSDDIIEIGMVKVID-GQERDFFQSLVRPGG--PLPVKIKQLTGLKDD 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F +I + F + + HN KFD F+ A P+ + DTL Sbjct: 63 DFQSAPWFQTIIPKILTFIG--DLPLVGHNIKFDRDFLAAACGHQL-----PNDLYDTLE 115 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR PS+ + L LCK G+ ++ +H AL D+ + + +K++ Sbjct: 116 LARILQPSAPSHRLGELCKIAGVEVN--VEHRALDDARSSARLMLKLL 161 >gi|307545330|ref|YP_003897809.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581] gi|307217354|emb|CBV42624.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581] Length = 682 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 10/158 (6%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 + FD ETTGL + DR+I +GA +++ + TF+ + P R + +HG+ D Sbjct: 491 VAFDTETTGLALREGDRLISLGACRIVNGRLLADETFEQHVNPQ-RPIPSASTAIHGLGD 549 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +++ P+ + F D+ +A +AHNA FD+ I D D ++DTL Sbjct: 550 QDVENAPTAEQVLPRFRDYVG--SAVLLAHNAAFDMLAIRPG---PGTDAFD-MPVLDTL 603 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 ++R P +DL+SL KRYG+ ++H AL D+ Sbjct: 604 LLSRALDPGLEGHDLDSLAKRYGLRFPPGTRHTALGDA 641 >gi|217076887|ref|YP_002334603.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B] gi|217036740|gb|ACJ75262.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B] Length = 186 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 11/185 (5%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL+ DRIIEI V + + + + PN R + K+HGI+++ Sbjct: 9 VMDTETTGLNPYFGDRIIEIAIVPVYKNKIVKKWIYHSLVNPNIRIPALTE-KIHGISND 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D PS +I S + + ++ HNA D+ FI+ + I + P++ R IDTL Sbjct: 68 AITDAPSLENIISNVRAY--AKGTIFVMHNAYVDLSFIDIATKEIGEFPIN-FRYIDTLE 124 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFGFK 186 I++ + R+ L SL K + I+ + H AL D+ L + V++K+ +G + IN + Sbjct: 125 ISQVLYNKKRS-LESLVKEF--KIADKVPHRALEDAILTAKVFLKLYEKIGYNNINEFIR 181 Query: 187 TNEDR 191 DR Sbjct: 182 IWGDR 186 >gi|261363839|ref|ZP_05976722.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria mucosa ATCC 25996] gi|288568430|gb|EFC89990.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria mucosa ATCC 25996] Length = 479 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 12/162 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 +V D+ETTG + DR+ E+ + S + V C K PE +L GI+++ Sbjct: 34 VVVDLETTGGNLYQDRVTEVALLRFDGQSVCRYEWLVNPC----KPIPEFVAQLTGISNK 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K P F I S+ Q A +AHN++FD F+ E +R D P+ + T+ Sbjct: 90 MVKTAPLFEEIASQLLPLL--QGAVVVAHNSRFDYTFLRHEFRRAGIDFAAPA--LCTVQ 145 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++RR +P +++L+S+ +R I + +R H A+ D LSD Sbjct: 146 LSRRLYPEFYKHNLDSIIERNAIAVENR--HRAMTDVLALSD 185 >gi|147677749|ref|YP_001211964.1| hypothetical protein PTH_1414 [Pelotomaculum thermopropionicum SI] gi|146273846|dbj|BAF59595.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 937 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 10/149 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGLD +DRIIEIG V L D K + + P GR + L G+ D Sbjct: 6 VVCDLETTGLDPLSDRIIEIGLVRLKDL-KIVDIYHTMVNP-GRPLPLKIKNLTGLDDSD 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P+FS + + F +A HN +FD+GF+ A K+P DT+ + Sbjct: 64 LASAPAFSGVREKVLGFIG--DAPIAGHNIRFDMGFLAAAGGISFKNP-----AYDTVEL 116 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSK 157 AR P L SLC+R + + R + Sbjct: 117 ARLAVPGLPTYRLESLCERLNVEAAARHR 145 >gi|222099149|ref|YP_002533717.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM 4359] gi|281411717|ref|YP_003345796.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila RKU-10] gi|221571539|gb|ACM22351.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM 4359] gi|281372820|gb|ADA66382.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila RKU-10] Length = 186 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 11/168 (6%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL-KLHGITD 67 V D ETTG D DRIIEI AV + +NR F + P+ R P + K+HGI++ Sbjct: 10 VVDTETTGTDPFGGDRIIEIAAVPVFKGKIFSNRAFHSLVNPHVR--IPALIQKVHGISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ P +++ F D+ + + HNA FD+ F++ + PL + IDTL Sbjct: 68 EEVEEAPDMGTVYERFRDYV--KGTVLVFHNANFDLTFLDMMAKETRNFPL-TNAYIDTL 124 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I++ + L LC++ G I + +H AL D+ + + V+++++ Sbjct: 125 DISQEVF-GRPHSLKWLCEKLG--IRDKIEHRALSDALVTAKVFVRLV 169 >gi|78186872|ref|YP_374915.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273] gi|78166774|gb|ABB23872.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273] Length = 236 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 16/173 (9%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R +VFD ETTG D K D +I IGAV + S +F+V L R EA+ +HG+ Sbjct: 47 VRMVVFDTETTGFDLKTDGVISIGAVAINGLSINVADSFEV-LVRQDRVGRSEAVAVHGL 105 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + F ++ ++ +A +A FDV +N L + L ++D Sbjct: 106 LKKDIAGGAGEVEAAEAFLEYIG--SSILVAQHASFDVAMLNRILSETFRIRLFNG-VVD 162 Query: 126 TLSIARR---------KHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLL 167 T S+A+R H + L+ LC+RYGI + H + A L + LL Sbjct: 163 TASLAKRLEKGPYYNLAHKAGEYRLDHLCQRYGIRLYDRHTAAGDAFLTAQLL 215 >gi|91775906|ref|YP_545662.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] gi|91709893|gb|ABE49821.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] Length = 462 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 84/161 (52%), Gaps = 9/161 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTG DRI EIG + + + R +Q + P SP + GI++ Sbjct: 6 VLLDLETTGATPVTDRITEIGLIRYENGIEVKR-WQTLVNPE-MHISPFITSITGISNAM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P F + +E + A AHN +FD GF+ E +R+ D ++ T+ + Sbjct: 64 VKDAPLFKDVANELLSHLH--GAVLCAHNVRFDYGFLKNEFRRL--DITLRQNVLCTVKL 119 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 +RR +P + + L+++ R+GI + ++H A+ D ++++ Sbjct: 120 SRRLYPEYKSHGLDAIIARHGIACA--ARHRAMGDVEVMAE 158 >gi|269836971|ref|YP_003319199.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM 20745] gi|269786234|gb|ACZ38377.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM 20745] Length = 658 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 8/150 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V DIETTGL RIIE+ A+ Y R N + P + KL GI + Sbjct: 89 VVIDIETTGLRPLRQRIIEVAAIR---YRGGRRQGVFSTLVNPERPVPAYIRKLTGIDET 145 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F + E F + I +N +FD+ F+NAEL+R+ + PL R +D L Sbjct: 146 ALAGAPVFRRVADELTAFLGDDL--LIGYNVEFDIAFLNAELKRLGRPPLINPR-LDLLP 202 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSK 157 ++ + P R+ L++ C G+ R + Sbjct: 203 LSTQLIPGMRRSGLDAACLALGLEFRERHR 232 >gi|159039058|ref|YP_001538311.1| hypothetical protein Sare_3518 [Salinispora arenicola CNS-205] gi|157917893|gb|ABV99320.1| DNA polymerase III, epsilon subunit [Salinispora arenicola CNS-205] Length = 585 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 96/224 (42%), Gaps = 28/224 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG I EIGAV++ + + P G P L GIT Sbjct: 33 VVVDLETTGGAPDGGGITEIGAVKVRGGEQLG-VLATLVNP-GVPVPPFVTVLTGITQAM 90 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L PS + + F +F + +A +AHNA +DVGF+ A +P RI+DT ++ Sbjct: 91 LLPAPSIAQVLPSFLEFLS-ADAVLVAHNAPYDVGFLKAACAAHGHRWPNP-RILDTAAL 148 Query: 130 ARRKHPSSRNDLNSLCKRYGITISH-----RSKHGALLDSHLLSDV---YIKMMVG---- 177 ARR SR+++ + +R G ++ + H AL D+ DV I + G Sbjct: 149 ARRVL--SRDEVPN--RRLGTLAAYFRTSTQPTHRALDDAKATVDVLHGLIARLGGHRVH 204 Query: 178 --GSQINFGFKTNED----RFFKEEKKTVPNISLLKR--DKPLF 213 G I F R E P + L + D+PL+ Sbjct: 205 TIGEAIEFARAVTPTQRRKRHLAEGLPRTPGVYLFRGADDRPLY 248 >gi|154509184|ref|ZP_02044826.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC 17982] gi|153798818|gb|EDN81238.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC 17982] Length = 550 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 12/172 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + D I EIGAV + D + + F + P+ R P L GIT Sbjct: 30 VVVDLETTGLGAGAD-ITEIGAVRIRDGAVVDE-FSSLVKPS-RPIPPFITSLTGITPAM 86 Query: 70 LKDKPSFSSIFSEF--WDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D +S+ F W ++ +AHNA FDVGF+ R P RI+DT Sbjct: 87 VADAAPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRA-ARACARPWPRVRIVDT 145 Query: 127 LSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L++AR P RN L ++ +G +H AL D+ +++ + + Sbjct: 146 LALARLALPRPLVRNHKLGTVASYFGTATV--PEHRALGDARATAEILLGFI 195 >gi|294660232|ref|NP_852876.2| DNA polymerase III subunit alpha polC/Gram positive-type [Mycoplasma gallisepticum str. R(low)] gi|284811887|gb|AAP56444.2| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma gallisepticum str. R(low)] gi|284930337|gb|ADC30276.1| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma gallisepticum str. R(high)] Length = 1494 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 11/183 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVF-------LCPNGR 53 ++ +++ ++FDIETTGL++ ++IIEI AV + + + TN + L N + Sbjct: 403 LKLDQLSFVIFDIETTGLNAYYEQIIEIAAVRVKAELNVTNHQLEFVQIGKFEKLIKNKK 462 Query: 54 KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQR 112 S +L G+ D LKD ++ EF +F + + +AHN FD +IN +L + Sbjct: 463 PLSKFTTQLTGLKDSDLKDAQDEKTVLEEFVNFIQKDDV-LVAHNGIDFDFIWINTKLDK 521 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 PLD + ++D+L +A + + R L +L + G H A D+ LL+ + Sbjct: 522 YKLKPLD-NPMLDSLRLAYQLYQFKRYTLENLSLKLGYEYDKTLAHRANYDTELLAKCLM 580 Query: 173 KMM 175 M+ Sbjct: 581 IML 583 >gi|307326641|ref|ZP_07605834.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] gi|306887625|gb|EFN18618.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] Length = 638 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 9/174 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ET+GL ++ DR++ + + + + F L P P +K+HG+T E L Sbjct: 22 LVDVETSGLMARRDRVLSVAVITVGPDGEQTGEFSTLLNPG---CDPGPVKVHGLTVERL 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P+F + Q+ +AHNA+FD F+ E R + L S+ + TL++ Sbjct: 79 QGAPTFDQVAGRIGAML--QDRVLVAHNAQFDYDFLAHEFAR-ARTWLPVSQRLCTLALN 135 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 R+ P + + L +L YG I + H AL D+ +L+ + + +Q++ Sbjct: 136 RQVDPPTGDMKLGTLAAHYG--IPQQRAHDALDDTRVLAGILRASLREAAQLDL 187 >gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC 25259] gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans ATCC 25259] Length = 470 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 11/162 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGIT 66 R D+ETTG ++ DR+ EIG V T+ + P + P+ ++ L GI+ Sbjct: 9 RLAFVDLETTGANAARDRVTEIGVVV--VDGDRVETWSTLVNPE--RAIPQFIQQLTGIS 64 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + D P+F+ + E + + + +IAHNA+FD GF+ E QR+ + + ++ T Sbjct: 65 NEMVADAPTFARVADELAERLDGRL--FIAHNARFDYGFLKHEYQRLGRR--FRADVLCT 120 Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + ++RR P R++L+SL R+G+ + +H AL D+ L+ Sbjct: 121 VRLSRRLFPEHYRHNLDSLIARHGLA-TEGDRHRALADADLI 161 >gi|322417781|ref|YP_004197004.1| putative PAS/PAC sensor protein [Geobacter sp. M18] gi|320124168|gb|ADW11728.1| putative PAS/PAC sensor protein [Geobacter sp. M18] Length = 835 Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 9/172 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHG 64 + +VFD ETTGL S+ D+++ I AV + N F + P GR E+ H Sbjct: 639 LEYVVFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNP-GRHIPAESTAFHR 697 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I D + D PS + ++ +F + + A +AHNA FD ++ PL + I+ Sbjct: 698 IEDHMVADAPSMNEVYPQFVKYAGD--AVLVAHNAAFDKKCLDMAAAEAGL-PLVENPIL 754 Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL ++ H + + L+++ +R GI I R H +L D+ + +++ ++ Sbjct: 755 DTLFLSVGLHSGTEGHSLDAMAQRMGIAIEGR--HTSLGDARATAQIFLGLL 804 >gi|257066105|ref|YP_003152361.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548] gi|256797985|gb|ACV28640.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548] Length = 1365 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 11/167 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68 +VFD+ETTGL DRI EIGA ++ K + + P PE +++ GIT+E Sbjct: 350 VVFDLETTGLSRYKDRITEIGACR-VEGGKITEIYNELVNP--EMVIPEKIIEITGITNE 406 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+ + F DF +++ + N FDVGF+ R+ D +P +DTL Sbjct: 407 MVKDCPTIEEVLPGFLDFC--KDSILVGQNTDFDVGFVRENCHRMGLD-FNPI-YLDTLP 462 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR + L+ + ++ + I + H A D+ + ++IKM Sbjct: 463 MARALFSDMKKFSLDKIARK--LEIPAFNHHRASDDARATAQIFIKM 507 >gi|84496154|ref|ZP_00995008.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649] gi|84382922|gb|EAP98803.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649] Length = 572 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 14/158 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 +V D+ETTG I EIGAV++ + FQ F+ P + P + L GITD Sbjct: 21 VVVDLETTGGSPSECGITEIGAVKV-RAGEVLGEFQTFVNPG--QPIPAFISVLTGITDA 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127 ++D P F +F + +AHNA FDV F+ A R +D P P ++DT+ Sbjct: 78 MVRDAPRVEPALVAFLEF--AAGSVLVAHNAGFDVSFLKAACGRAERDWPSFP--VVDTV 133 Query: 128 SIARR---KHPSSRNDLNSLCKRYGITIS--HRSKHGA 160 +AR+ + + + L SL +G T + HR+ H A Sbjct: 134 HLARQLVTRDEAPNHRLGSLAVLFGATTTPDHRALHDA 171 >gi|323351851|ref|ZP_08087502.1| DNA polymerase III [Streptococcus sanguinis VMC66] gi|322121908|gb|EFX93640.1| DNA polymerase III [Streptococcus sanguinis VMC66] Length = 814 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S N +II+IG V L++ +T++ + P+ + E +K Sbjct: 1 MTQNDYKYAVVDLEATGTGS-NAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56 Query: 62 -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 57 ELTGLNDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165 >gi|321272268|gb|ADW80153.1| DNA polymerase III [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] gi|321272325|gb|ADW80207.1| putative DNA polymerase III [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB] Length = 74 Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 47/66 (71%) Query: 109 ELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 EL ++N + +R++DTL +AR+K P S LN LCKR+ I+++ R+ HGAL+D+ LL+ Sbjct: 2 ELGKLNAKLISSNRVLDTLPLARKKFPKSPASLNELCKRFDISLNDRTSHGALIDAQLLA 61 Query: 169 DVYIKM 174 VY ++ Sbjct: 62 KVYAQL 67 >gi|108801863|ref|YP_642060.1| DNA polymerase III subunit epsilon [Mycobacterium sp. MCS] gi|119871016|ref|YP_940968.1| DNA polymerase III subunit epsilon [Mycobacterium sp. KMS] gi|108772282|gb|ABG11004.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119697105|gb|ABL94178.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] Length = 330 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 11/162 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RI+ + A+ + D ++ L P P +HG+T E L Sbjct: 19 VVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPG---VDPGPTHVHGLTAEML 75 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 + P F + ++ + + +AHN FD F+ AE + + + P+D ++ T+ + Sbjct: 76 EGAPRFGDVVADLAELLRGRT--LVAHNVGFDYSFLTAEAELVGAELPID--SVMCTVEL 131 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ARR + N L +L +G + H AL D+ +L+ + Sbjct: 132 ARRLDLGTENLRLETLAAHWG--VPQLKPHDALDDAQVLAQI 171 >gi|297203185|ref|ZP_06920582.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] gi|197717364|gb|EDY61398.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] Length = 240 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 23/160 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68 I FD+ETTG D + RI+ +EL D R + +L G + +A+ +HGI++E Sbjct: 9 IGFDLETTGTDPREARIVTAAVIELRDGQSLGR--REWLADPGMEIPADAVAVHGISNER 66 Query: 69 -FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---- 117 + +P + + + + +W + +A+NA FD+ ++AEL+R Sbjct: 67 AAAEGRPADQVADAIADVLTTYW----KTGVPVVAYNAAFDLSLLSAELRRYGLPSLRER 122 Query: 118 ---LDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 LDP+ +ID +I R ++ + +L ++C YG+ + Sbjct: 123 LGGLDPAPVIDPYTIDRSVDRYRRGKRNLEAVCTEYGVAL 162 >gi|149188690|ref|ZP_01866982.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio shilonii AK1] gi|148837600|gb|EDL54545.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio shilonii AK1] Length = 207 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 15/180 (8%) Query: 1 MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ + +V D ETTGL ++ DR IEIGAV+L + + +R FQ + P G + S Sbjct: 1 MMLSSAKSVVVLDFETTGLSPNQGDRAIEIGAVKLENGTVVDR-FQSLMNP-GFRVSGFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GI++ L + PS + EF F +N+ +AHNA FD F++AEL+ IN+ Sbjct: 59 ENYTGISNAMLANAPSCKDVMGEFSTFI--KNSNLVAHNASFDKRFLDAELELINESY-- 114 Query: 120 PSRIIDTLSIARR-KHPSSRNDLNSLCKRYGIT---ISHRSKHGALLDSHLLSDVYIKMM 175 +L ++RR + + L L + I + HR AL D+ + + +++ ++ Sbjct: 115 TGEFACSLLVSRRLNQEAHSHKLGDLVAYHNIANDGVFHR----ALADAEVTASLWLLLV 170 >gi|266619696|ref|ZP_06112631.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] gi|288868749|gb|EFD01048.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] Length = 264 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG+ + D IIEI A+++ ++ + TF + P R A K++GITDE Sbjct: 59 VVFDLETTGISAVKDDIIEISALKVKNHEQV-ETFSRLVNPR-RPIPAGATKVNGITDEM 116 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +P I EF DF + + I HN + FD+ F+N + + + + IDTL Sbjct: 117 VQSEPGLEFILPEFLDFIDGE--ILIGHNIQSFDLLFLNRAADEVCRKAV-LNDFIDTLF 173 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR P SR+ L L + IS H A D + Y M Sbjct: 174 MARALLPGLSRHRLTDLADYF--KISSEGAHRAFNDCVMNQICYEHM 218 >gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14] gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14] Length = 653 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ET+GL ++ DRI+ I + + + P P + +HG+T E L Sbjct: 21 LVDVETSGLIARRDRILSIAVLTFGPDGTQTGEYSTLVNPG---CDPGPVHIHGLTAERL 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P+F + Q+ +AHNA+FD F+ E R L ++ + TL++ Sbjct: 78 RDAPAFEQVAGRIGALL--QDRVMVAHNAQFDYDFLAHEFARARLC-LPVNQRLCTLALN 134 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 RR P + + L SL YG+ + H AL D+ +L+ ++ Sbjct: 135 RRVEPPAADLSLASLAAHYGVPQTR--AHDALDDTRVLAGIF 174 >gi|153833352|ref|ZP_01986019.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01] gi|148870361|gb|EDL69287.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01] Length = 204 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 13/170 (7%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+++D + +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKIVD-GEVVDSFQQLMNP-GFRVSSFIEGYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ PS + + F +F +N IAHNA FD F++ EL+RI D +L Sbjct: 66 MLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDTELERI--DCGYSGEFACSLL 121 Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +ARR PS + L L RY + H AL D+ + + +++ M+ Sbjct: 122 VARRLIQDAPSHK--LGELV-RYKNIENDGVFHRALADAQVTAKLWLLMV 168 >gi|289423581|ref|ZP_06425382.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] gi|289156083|gb|EFD04747.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] Length = 174 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 23/174 (13%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKL 62 IV D+ETTGLD + IIEIG E+ L+YS+ + P G +S L Sbjct: 11 IVVDLETTGLDPLQGHEIIEIGVTEIKKGDITLNYSR-------LIKPKGIISS-FITNL 62 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 I++E ++ + + + +F ++ ++ IAHNAKFD+ F+N L+++ +P+ Sbjct: 63 THISNEMVEGEKTLEEVLPKFREYIG--DSVLIAHNAKFDIPFLNYYLEKMGLEPI--KN 118 Query: 123 IIDTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I TL + + + +P + L++ C YG I + H A D+H + +++K+ Sbjct: 119 YICTLEMLKMNKMYPLKKKSLSAACDFYG--IKNVEAHRAYADTHATALLFLKI 170 >gi|269965971|ref|ZP_06180063.1| ribonuclease T [Vibrio alginolyticus 40B] gi|269829367|gb|EEZ83609.1| ribonuclease T [Vibrio alginolyticus 40B] Length = 214 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D T + P G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLKMDEHGVLHPASTIHFHVEPFEGANLEKEALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD+GF+NA +R + Sbjct: 80 IRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLGFVNAANERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCG 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|326333554|ref|ZP_08199794.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] gi|325948663|gb|EGD40763.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] Length = 580 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 101/233 (43%), Gaps = 34/233 (14%) Query: 10 IVFDIETTGLDSKNDRII-EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG N +I EIGAV++ + FQ + P+ P L GIT+ Sbjct: 45 CVVDLETTGNSPDNGGMITEIGAVKVRG-GEVLGEFQTLVNPHT-GIPPSIAVLTGITNS 102 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+ S+ F +F + +AHNA FDVGF+ + P ++DT+ Sbjct: 103 MVASSPTIESVLPAFLEF--AEGCVLVAHNAPFDVGFLK-HFAAKQERPWPRFEVLDTVK 159 Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 IARR + + + L SL + +G + H AL D+ DV MM +G N Sbjct: 160 IARRVITRDEAPNHKLGSLARVFGSPTT--PNHRALQDARATVDVLHGMMERLG----NL 213 Query: 184 GFKTNED---------------RFFKEEKKTVPNISLLK--RDKPLFTRITKE 219 G T ED R E+ P + L K +D+ L+ +K+ Sbjct: 214 GVLTLEDLAAFSAKVTTAQRKKRHLAEDLPHAPGVYLFKDSQDRVLYIGTSKD 266 >gi|226310490|ref|YP_002770384.1| hypothetical protein BBR47_09030 [Brevibacillus brevis NBRC 100599] gi|226093438|dbj|BAH41880.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 235 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 9/185 (4%) Query: 2 IRKNKMRKIVFDIETTGL-DSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 I + + +V D+ETTG D II +GAV + ++ +F + P GR P Sbjct: 46 IPLHDLEVVVVDLETTGFYPDHGDAIISMGAVAMRGEHLLLGDSFYTLVNP-GRAIPPHI 104 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L GITD+ + D P S F+ + ++ +AH+++ + F+ + L + ++ P Sbjct: 105 RSLTGITDDMVADAPPLLEALSRFFQYVGDR--PLVAHHSRHEREFLRSGLWKTSRRPFT 162 Query: 120 PSRIIDTLSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 R++DT+ + R +P L++LC + I IS R H A D+ ++ K +V Sbjct: 163 -HRMLDTMLLIRLLNNPIGNGSLDALCAAHDIPISRR--HHAYCDALAAGTLWAKYLVKA 219 Query: 179 SQINF 183 F Sbjct: 220 QSQGF 224 >gi|295395939|ref|ZP_06806124.1| nuclease subunit of the excinuclease complex [Brevibacterium mcbrellneri ATCC 49030] gi|294971212|gb|EFG47102.1| nuclease subunit of the excinuclease complex [Brevibacterium mcbrellneri ATCC 49030] Length = 560 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG +S I EIGAV+ FQ + P SP +L GIT+ + Sbjct: 17 VVDLETTGANSAQGDITEIGAVKSRGGEIIGE-FQTLVRPTRSVISPFVERLTGITNSMV 75 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P +S+ F +F + +AHNA FDVGF+ R++ P ++DT+ +A Sbjct: 76 ATAPELASVIPMFLEF--AHGSILVAHNAGFDVGFLKEACARLDY-PWPGYEVVDTVRLA 132 Query: 131 R---RKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVY 171 R + + L +L + + +HR+ A H+L ++ Sbjct: 133 RLCVTRQEVRNHKLGTLATFFNVPTPPTHRALDDARATHHILQSMF 178 >gi|312195665|ref|YP_004015726.1| DNA polymerase III epsilon subunit [Frankia sp. EuI1c] gi|311227001|gb|ADP79856.1| DNA polymerase III, epsilon subunit [Frankia sp. EuI1c] Length = 615 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 79/186 (42%), Gaps = 16/186 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG I E GAV++ + G P L GITD Sbjct: 53 VVFDLETTGTGPTTAEITEFGAVKVRGGEVVAEFATLVRASTG--IPPLITVLTGITDAM 110 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P + + F +F Q +AHNA FD+ F+ A +R+ P+ +DT + Sbjct: 111 LATAPPLAEVLPAFLEFI--QGTVLVAHNAGFDLSFLKAACERVGY-PVPTWEHLDTARL 167 Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFG 184 ARR + S N L+SL + + H AL D+ DV + +G N G Sbjct: 168 ARRIVTRDESPNNKLSSLARLF--RARTEPCHRALADARATVDVLHGLFERLG----NLG 221 Query: 185 FKTNED 190 T ED Sbjct: 222 VTTLED 227 >gi|289423924|ref|ZP_06425717.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] gi|289155701|gb|EFD04373.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] Length = 188 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 16/165 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEF 69 V DIET+GL+ + + I+E+GAV + D Q+ RK+ S EA K++G+T Sbjct: 29 VIDIETSGLNPEKNEILELGAVRVRDNIVVAEYEQLI---RPRKSISKEATKVNGLTKRM 85 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D+P + +F DF + I HN +FD+ FI +L NK IDTL + Sbjct: 86 LIDEPFVEDVIWDFKDFLGKD--VLIGHNIEFDLEFIRNQLPIRNK-------YIDTLPL 136 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 AR+ R+ L +C Y I H ++ D + Y KM Sbjct: 137 ARKLLKIKRHRLIDICHHYKIP---EPNHRSISDCNATHLCYQKM 178 >gi|56477410|ref|YP_158999.1| nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) [Aromatoleum aromaticum EbN1] gi|56313453|emb|CAI08098.1| Nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) [Aromatoleum aromaticum EbN1] Length = 469 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 9/159 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTG + +DR+ EI AV ++ + ++ + P R +L GITDE Sbjct: 8 VLIDVETTGANPVSDRVTEI-AVLRIERGEIVGRWESLVNPE-RPIPALIQRLVGITDEM 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+F+ + + A ++AHNA+FD GFI E R+ + + ++ T+ + Sbjct: 66 VAGAPTFAELADSVRGHLD--GAVFVAHNARFDYGFIRNEFSRLGQQ--FEASVLCTVKL 121 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R +P R+ L++L +R+G T ++H A+ D+ +L Sbjct: 122 SRALYPEHHRHGLDALIERHGFTCG--ARHRAMGDTDVL 158 >gi|193213751|ref|YP_001994950.1| hypothetical protein Ctha_0031 [Chloroherpeton thalassium ATCC 35110] gi|193087228|gb|ACF12503.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC 35110] Length = 578 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 13/183 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG +RIIEI A++ + + + + P ++ S + GIT+ + Sbjct: 26 VVDLETTGGLKPENRIIEICAIKCRNGQEVG-MLESLVNPE-QQISYFISQYTGITNSMV 83 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P S+ ++ +FF Q ++AHN FD+GFIN EL+R L +R + T +A Sbjct: 84 DNAPVIQSLLTKVSEFF--QETIFVAHNVPFDMGFINMELERNGYAKLT-NRWLCTFRLA 140 Query: 131 RRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 RR P+ + +L L K +GI + HR++ LL+++ I +Q G +T Sbjct: 141 RRLLPTQQKKNLGDLAKYFGIIVENRHRARGDCEATIKLLAELIIL-----AQEQHGVET 195 Query: 188 NED 190 E+ Sbjct: 196 AEE 198 >gi|160878305|ref|YP_001557273.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans ISDg] gi|160426971|gb|ABX40534.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans ISDg] Length = 235 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 11/169 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65 M + DIE+TGL + DRIIEI A+ +D K F+ + P PE + +L GI Sbjct: 1 MNFLAIDIESTGLSPEKDRIIEIAAIRYID-GKPKERFEKLINPGC--PLPERITELTGI 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T++ L + + EF F E + HN D FI R+ + ID Sbjct: 58 TEDMLAGAMTEREVIKEFLTFAGEDV--LLGHNVSVDFSFIKTAADRLKIGY--ERQGID 113 Query: 126 TLSIARR-KHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVY 171 TL ++R K + +L S+C+ YGI SHR+ A+ + L +Y Sbjct: 114 TLYLSRTLKSDLEKKNLESMCEHYGIIRECSHRALEDAIAAATLYQKLY 162 >gi|319440229|ref|ZP_07989385.1| putative exonuclease [Corynebacterium variabile DSM 44702] Length = 186 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 13/162 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEA 59 +R++ +V D ETTGLD +DRIIE+ A+ + + R +F + GR Sbjct: 14 LRRSLRDCVVVDCETTGLDPDSDRIIEVAALRV----REGRPVALFHRVVDPGRPLPGFI 69 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L G+TD+ ++ P I + F + HN FD+ FI+AE+ + P Sbjct: 70 TSLTGLTDQQVRQAPPVGDILGDLSAFLAHDTV--VGHNVGFDLAFIDAEITTTHSTPRA 127 Query: 120 PSRIIDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKH 158 S + T AR P SR LN+L + + + HR H Sbjct: 128 ASLSLCTAESARALVPRSRVGRYRLNTLAEAFD--LDHRPSH 167 >gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM 43017] gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family [Saccharomonospora viridis DSM 43017] Length = 570 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG+ I EIGAV++ F + P G P+ + L GIT Sbjct: 18 VVVDLETTGVTPDGAGITEIGAVKVRGGEVVGE-FATLVDP-GVPIPPQIVALTGITPAM 75 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P + F +F + A +AHNA FDV F+ A Q + P+ ++ TL + Sbjct: 76 VRSAPRIEQVLPTFLEFVS--GAVLVAHNAGFDVSFLKAACQTHGYEWPKPT-VVCTLKL 132 Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR + + + L++L +G + KH AL D+ DV ++ Sbjct: 133 ARRVLGRQETRGHRLSTLASLFGARST--PKHRALDDAKATVDVLHGLL 179 >gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN] gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans PsJN] Length = 383 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 13/168 (7%) Query: 10 IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67 IVF D+ETTG + RI E+G VE+ + + V + ++ P ++ L GIT+ Sbjct: 15 IVFVDLETTGGSTAEHRITEVGVVEIGPAGVSRWSSLV----DPQQPIPSFIQQLTGITN 70 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P+F I E + N + ++AHNA FD GF+ E +R+ DP ++ T+ Sbjct: 71 AMVRGAPTFDVIAPELFKRLNGKL--FVAHNASFDRGFLRGEFRRVGLA-FDPD-VLCTV 126 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P+ R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 127 RLSRALFPAEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172 >gi|82548268|gb|ABB82959.1| putative DNA polymerase type III, exonuclease domain [uncultured organism HF70_19B12] Length = 270 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 7/143 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTGL+ + DRI++ + +D S QV L G K ++ +HGI++E + Sbjct: 12 FDTETTGLNPRKDRILQYAFIGRDVDGSSV---CQVELIDPGIKIPEASMNVHGISNEDV 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + SF ++ + + A + HN FD FI E R+ + P ++DTL + Sbjct: 69 TGRGSFGMHSNDIAELID--GAIIVGHNINAFDWRFIEFEFMRVGEAVPSPYALVDTLEL 126 Query: 130 ARRKHPSSRNDLNSLCKRYGITI 152 AR R+ L LCKRYGI + Sbjct: 127 ARGLRIPGRHTLGHLCKRYGIGL 149 >gi|300773503|ref|ZP_07083372.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300759674|gb|EFK56501.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 469 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 9/149 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69 + DIETTG + N I EI A+ L D + ++Q + P+ K P ++ L GIT E Sbjct: 15 IVDIETTGGYAANSGITEI-AIYLHDGHQIIDSYQTLINPH--KEIPYHIQMLTGITPEM 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D PSF + ++ + F +N ++AHN FD F+ A L+ P + T+ + Sbjct: 72 LTDAPSFEDVAADIYSFL--ENKVFVAHNVNFDYSFVYAHLKACGYQWKSPK--LCTVRL 127 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSK 157 AR S L +LC+R I IS R + Sbjct: 128 ARNIFKGFSSYSLGNLCQRLDIPISDRHR 156 >gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168] Length = 1447 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 19/175 (10%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLH 63 +K++ ++FD+ETTGL + + IIE GA+ L + + + Q F+ P G+ P A+ K+ Sbjct: 385 DKLKFVIFDLETTGLSAFYNEIIEFGAIVLQNGIEIEKH-QFFIKPTGK--IPSAITKIT 441 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNE------QNAEWIAHNAKFDVGFINAELQRINKDP 117 GI+ + + D+ + S W+ E +++ +AHNA FD F+ ++ K Sbjct: 442 GISQKMI-DETAIS------WEIALEKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKS 494 Query: 118 LDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 L + IIDTL ++R +P+ + + L ++ KRY I H A D+ +L+ ++ Sbjct: 495 LK-NPIIDTLEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIW 548 >gi|284991755|ref|YP_003410309.1| DNA polymerase III subunit epsilon [Geodermatophilus obscurus DSM 43160] gi|284065000|gb|ADB75938.1| DNA polymerase III, epsilon subunit [Geodermatophilus obscurus DSM 43160] Length = 609 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG K+ I EIGAV++ + FQ + P G + P L GIT Sbjct: 40 VVVDLETTGGSPKDSAITEIGAVKVRG-GEVLGEFQTLVDP-GCEIPPYISVLTGITSTM 97 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P ++ F +F + A +AHNA FD+GF+ A N P + +DT + Sbjct: 98 VAAAPRIGAVLPHFLEF--ARGAVLVAHNAPFDLGFLKAACA-ANGIPWPATASVDTAVL 154 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSK----HGALLDSHLLSDV 170 ARR SR+++ + CK + R+ H AL D+ DV Sbjct: 155 ARRLL--SRDEVPN-CKLATLAPYFRTSTEPCHRALADARATVDV 196 >gi|156741527|ref|YP_001431656.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM 13941] gi|156232855|gb|ABU57638.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM 13941] Length = 944 Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 15/168 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 + D+ETTGL++ D IIEI AV+ + TF + P R + P + +L GIT E Sbjct: 6 VAIDVETTGLEAGVDEIIEIAAVK-FRTGEVIETFDTLVQP--RHSLPLNSSRLTGITAE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P FS + F F +N + HN +FD+ + A+ R+ P DT Sbjct: 63 MLAGAPRFSEVAPRFAAFL--KNYPLVGHNVRFDINMLQAQGMRL------PQPAFDTFE 114 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A P + L++L + GI H H AL D+ + V++ ++ Sbjct: 115 LATLLMPRTPAYRLSALAETLGIV--HDEAHRALSDADVTRQVFLHLL 160 >gi|315221792|ref|ZP_07863704.1| DnaQ family exonuclease/DinG family helicase [Streptococcus anginosus F0211] gi|315189025|gb|EFU22728.1| DnaQ family exonuclease/DinG family helicase [Streptococcus anginosus F0211] Length = 819 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 93/174 (53%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + K + V D+E T S N +II++G V L++ + +T++ + P+ K P + Sbjct: 1 MTQEKRKYAVVDLEATSASS-NAKIIQVGIV-LIENGQIVKTYETDVNPH-EKLDPHIRQ 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L+ P FS + E ++ ++A ++AHN KFD + L + + P Sbjct: 58 LTGLTDKRLRKAPDFSQVAREIYELI--EDAIFVAHNVKFDANLLAEALFWEGFELVTPR 115 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ P+ + +L LC++ I + H H AL D+ + +++K+ Sbjct: 116 --VDTVELAQVFFPTFEKYNLGILCEQLDIPLKH--AHTALADASATATLFLKI 165 >gi|308446414|ref|XP_003087176.1| hypothetical protein CRE_18392 [Caenorhabditis remanei] gi|308260385|gb|EFP04338.1| hypothetical protein CRE_18392 [Caenorhabditis remanei] Length = 137 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 3/82 (3%) Query: 103 VGFINAELQRINKDPL-DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 + F++ E +R L + + DTL++A+ KHP +N L++L +RY I R+ HGAL Sbjct: 1 MNFLDMEFKRSGLQALSEVCEVTDTLAMAKSKHPGQKNSLDALVRRYEIPQRDRTFHGAL 60 Query: 162 LDSHLLSDVYIKMMVGGSQINF 183 LD+ +LSDVY+ M G Q++F Sbjct: 61 LDAEILSDVYLAMT--GGQVSF 80 >gi|195646046|gb|ACG42491.1| DNA polymerase III subunit epsilon [Zea mays] Length = 315 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 21/179 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDE 68 +VFDIETTG ++DRIIE +L+ N TFQ + P KN+ +HGI + Sbjct: 116 LVFDIETTGFSRRDDRIIEFAVRDLM--GGKNSTFQTLINPEKDVKNT----YVHGINNS 169 Query: 69 FL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDP 120 L D P F I + + + W+AHN + FDV F+ E +R + Sbjct: 170 MLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGD 229 Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DTL IA++ S+ + L+S L +RY I ++ S H A+ D LS V K+ Sbjct: 230 WLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTG-SAHRAMQDVTTLSYVLQKL 287 >gi|294140713|ref|YP_003556691.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12] gi|293327182|dbj|BAJ01913.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12] Length = 206 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 21/199 (10%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D ETTGL ++ DR IEIGAV + D + TFQ + P G + S GI++ Sbjct: 10 IILDFETTGLSPNQGDRAIEIGAVRIQDGIVVD-TFQELMNP-GFRVSGFIEGYTGISNA 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + F DF + N +AHNA FD F++AEL IN + ++ Sbjct: 68 MLANAAPCEEVMARFADFIGDHN--LVAHNASFDQRFLDAELDGINLSY--GGKFACSML 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 IARR + + N Y + H AL DS + + ++++M+ Sbjct: 124 IARRLYQDAPNHKLGGLVEYKQIENDGVFHRALADSEMTAKLWLQML------------- 170 Query: 189 EDRFFKEEKKTVPNISLLK 207 D E T P+ +L++ Sbjct: 171 -DDMRSEHGITAPSFTLMQ 188 >gi|223946833|gb|ACN27500.1| unknown [Zea mays] gi|224030613|gb|ACN34382.1| unknown [Zea mays] Length = 315 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 21/179 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDE 68 +VFDIETTG ++DRIIE +L+ N TFQ + P KN+ +HGI + Sbjct: 116 LVFDIETTGFSRRDDRIIEFAVRDLM--GGKNSTFQTLINPEKDVKNT----YVHGINNS 169 Query: 69 FL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDP 120 L D P F I + + + W+AHN + FDV F+ E +R + Sbjct: 170 MLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGD 229 Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DTL IA++ S+ + L+S L +RY I ++ S H A+ D LS V K+ Sbjct: 230 WLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTG-SAHRAMQDVTTLSYVLQKL 287 >gi|59713199|ref|YP_205974.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] gi|59481447|gb|AAW87086.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] Length = 212 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 13/170 (7%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL ++ DR IEIGAV+L + +R FQ + P G + SP GI++ Sbjct: 16 VVLDFETTGLSPNQGDRAIEIGAVKLENGVVVDR-FQGLMNP-GFRVSPFIENYTGISNR 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D S + +EF +F Q +AHNA FD F++ EL I ++ D L Sbjct: 74 MLADAASCDEVMNEFANFI--QGCNLVAHNASFDKRFLDGELALIQRE-YDGDFACSLLV 130 Query: 129 IARRKHPSSRNDLNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMM 175 R +S + L L + I + HR AL D+ + + +++ ++ Sbjct: 131 SRRLTQEASSHKLGDLVAYHQIENDGVFHR----ALADAEVTASLWLVLL 176 >gi|113970108|ref|YP_733901.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4] gi|113884792|gb|ABI38844.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4] Length = 229 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 10/184 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL ++ R IEIGAV L++ + F + P R NS GI+++ Sbjct: 31 VVLDFETSGLSPNQGARAIEIGAV-LIEQGQITARFSELMNPGFRINS-FIEDYTGISNQ 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + F F + + +AHNA FD F++AE +I P + +L Sbjct: 89 MLAHAAPCAEVMARFAAFIGKHH--LVAHNAAFDQRFLDAEFAQIGHH--YPGQFGCSLL 144 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +ARR +P + N + R+ S + H AL D+ + ++++M+ Q G+ Sbjct: 145 LARRLYPEAINHQLATLVRHKQLPSDGTFHRALADAEMTGHLWLRMLADLKQ---GYAIT 201 Query: 189 EDRF 192 E F Sbjct: 202 EPPF 205 >gi|298244072|ref|ZP_06967878.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] gi|297551553|gb|EFH85418.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] Length = 1009 Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 13/175 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K+ +R I D+ETTGL ++ D I+E+ A++ S+ TF+ F+ P GR Sbjct: 1 MAKKSAIR-IALDLETTGLHAEQDAILEVAAIK-FQGSEVLDTFETFISP-GRSIPYRVQ 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GI E L P F +I + F + + H+ FDVGF L+R +P Sbjct: 58 RLTGIKPELLVGAPPFDAISRQLHTFLGDYPI--VGHSIPFDVGF----LRRWGLAHSNP 111 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++DT +A PS S +L + GI + +H A++D+ L V++ + Sbjct: 112 --MVDTFELATVLLPSLSSYNLGQVAHSLGIQVP-SDRHRAMVDTVLAMQVFLSL 163 >gi|322515227|ref|ZP_08068225.1| ribonuclease T [Actinobacillus ureae ATCC 25976] gi|322118732|gb|EFX90938.1| ribonuclease T [Actinobacillus ureae ATCC 25976] Length = 218 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 26/195 (13%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCP 50 + KN+ R ++ D+ET GL+++ D ++E+ A+ L+ K + Q F Sbjct: 10 LLKNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPF--- 66 Query: 51 NGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFD 102 G +P++LK +GI D L+ + E + Q A +AHNA FD Sbjct: 67 EGANINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKDQGCQRAVIVAHNATFD 126 Query: 103 VGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 F+ A ++RIN +DP P + DT ++A + + L C+ I+ + H A Sbjct: 127 QAFVQAAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKISFDGKQAHSA 184 Query: 161 LLDSHLLSDVYIKMM 175 L D+ ++++ M+ Sbjct: 185 LYDTEKTTELFCAMV 199 >gi|225376763|ref|ZP_03753984.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM 16841] gi|225211389|gb|EEG93743.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM 16841] Length = 241 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 9/166 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+E TGL++K DRI+E GA + + TF + P RK + + L GIT+E Sbjct: 6 VVIDLEMTGLNAKTDRILEAGAARVRG-NVVTATFSEIINPK-RKLPEKVVSLTGITNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + F+DF E + N FD F+ +N +DTL + Sbjct: 64 AAQGKETDATLAAFFDFIGEDI--LVGQNVIFDYSFLKQ--WAVNHKRTFERNAVDTLKL 119 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 AR+ P + DL SLC +GI H H AL D ++ +M Sbjct: 120 ARKFLPQEQKKDLASLCSYFGIERVH--AHRALDDVMETQQIFEQM 163 >gi|212723090|ref|NP_001131224.1| hypothetical protein LOC100192533 [Zea mays] gi|194690922|gb|ACF79545.1| unknown [Zea mays] Length = 315 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 21/179 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDE 68 +VFDIETTG ++DRIIE +L+ N TFQ + P KN+ +HGI + Sbjct: 116 LVFDIETTGFSRRDDRIIEFAVRDLM--GGKNNTFQTLINPEKDVKNT----YVHGINNS 169 Query: 69 FL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDP 120 L D P F I + + + W+AHN + FDV F+ E +R + Sbjct: 170 MLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGD 229 Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DTL IA++ S+ + L+S L +RY I ++ S H A+ D LS V K+ Sbjct: 230 WLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTG-SAHRAMQDVTTLSYVLQKL 287 >gi|221135181|ref|ZP_03561484.1| ribonuclease T [Glaciecola sp. HTCC2999] Length = 212 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G +++ D ++EI AV + +D + ++ + P G P A++ +G Sbjct: 17 VIIDVETAGFNAQTDALLEIAAVTVRMDEAGMLHPDQEIHYHINPFEGANIEPAAIEFNG 76 Query: 65 I---------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114 I DE K S S+ N Q + +AHNA FD+ F+NA L R N Sbjct: 77 IKVDCALRGAVDETEAMK-GLSKAISKLQKAANCQRSVIVAHNASFDMSFVNAALARTNV 135 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT S+A + L C+ I + HGAL D+ ++++ Sbjct: 136 KRSPFHPFVSFDTTSLAALT--LGQTVLVKACEAANIAFDQKQAHGALYDAQRTAELFCF 193 Query: 174 MM 175 MM Sbjct: 194 MM 195 >gi|261868521|ref|YP_003256443.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413853|gb|ACX83224.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1] Length = 217 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 26/195 (13%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCP 50 I K++ R +V D+ET GL++K D ++E+ A+ LL K + Q F Sbjct: 12 ILKHRFRGYLPVVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQAF--- 68 Query: 51 NGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFD 102 G PE+LK +GI D L+ S + SE + + Q + +AHNA FD Sbjct: 69 EGANIDPESLKFNGIDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFD 128 Query: 103 VGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 GF+ A QR+N ++P P DT +++ + L C+ I + H A Sbjct: 129 QGFLMAAAQRMNAKRNPFHPFSTFDTATLSGFMF--GQTVLVKACQAAKIPFDSQQAHSA 186 Query: 161 LLDSHLLSDVYIKMM 175 L D+ ++++ M+ Sbjct: 187 LYDTERTAELFCYMV 201 >gi|319950676|ref|ZP_08024577.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4] gi|319435659|gb|EFV90878.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4] Length = 547 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG D I EIGAV + + F+ +G +L GI E Sbjct: 39 VVVDLETTGTRPGGDEITEIGAVRIRG-GEVQAELSTFVSIDGVLPG-HISRLTGIAPED 96 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L PS + + F +F + A +AHNA+FD+GF+ A DP + TL++ Sbjct: 97 LVGAPSLGEVMATFLEF--SRGAVLVAHNARFDLGFLRAAAAATGHRWPDPPSVC-TLAL 153 Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR + + + L L G T+ H AL D+ DV ++ Sbjct: 154 ARRVLHRGETRGHRLGVLAAHLGATVE--PNHRALQDARATVDVLHALI 200 >gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] Length = 658 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 9/161 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ET+GL ++ DR++ + V + F L P P + +HG+T E L Sbjct: 22 LVDVETSGLVARRDRVLSVAVVTVGPDGAQTGEFSTLLDPG---CDPGPVHVHGLTAERL 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P+F + + +AHNA+FD F+ E R L +R + TL++ Sbjct: 79 HGAPAFEEVAQRISQML--EGRVLVAHNAQFDYDFLAHEFARAGVS-LPVARRLCTLALN 135 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 RR P +++ L +L YG + H AL D+ +L+ V Sbjct: 136 RRVDPPTQDLRLGTLAAHYG--VPQLRAHDALDDTRVLAGV 174 >gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] Length = 382 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 13/168 (7%) Query: 10 IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67 IVF D+ETTG + RI E+G VE+ T + + + ++ P ++ L GIT+ Sbjct: 15 IVFVDLETTGGSTSEHRITEVGVVEVGPTGVTRWSSLI----DPQQPIPSFIQQLTGITN 70 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P+F SI ++ N + ++AHNA FD GF+ +E +R DP ++ T+ Sbjct: 71 DMVHGAPTFESIAPALYERLNGKL--FVAHNASFDRGFLRSEFRRAGLA-FDPD-VLCTV 126 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 127 RLSRALFPGEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172 >gi|156975103|ref|YP_001446010.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116] gi|156526697|gb|ABU71783.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116] Length = 204 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 13/170 (7%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+++D + +FQ + P G + S GIT+ Sbjct: 8 VVLDFETTGLSPNMGDRAIEIGAVKIVDGEVVD-SFQQLMNP-GFRVSSFIEGYTGITNN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P+ + + F +F +N IAHNA FD F++AEL+RI +L Sbjct: 66 MLRTAPNCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERIGCGY--SGEFACSLL 121 Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +ARR PS + L L RY + H AL D+ + + +++ M+ Sbjct: 122 VARRLIQDAPSHK--LGELV-RYKNIENDGVFHRALADAQVTAKLWLLMV 168 >gi|311068754|ref|YP_003973677.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942] gi|310869271|gb|ADP32746.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942] Length = 930 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 92/174 (52%), Gaps = 11/174 (6%) Query: 5 NKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN K+ P + +L Sbjct: 2 NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN--KSIPFFIEQL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT+ ++++ F ++ E + + A ++AHN FD+GF+ EL L Sbjct: 59 TGITNSMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELNEAGFR-LPDCE 115 Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++R +P L L + + + H + H A D+ + +++K++ Sbjct: 116 VLDTVELSRIVYPGFEGYKLTELSEE--LQLKHENPHRADSDAEVTGFIFLKII 167 >gi|332705935|ref|ZP_08426009.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L] gi|332355339|gb|EGJ34805.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L] Length = 818 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 8/154 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG D ++EI A+ L+D K R F ++ + E+ ++HG +D FL Sbjct: 465 VFDVETTGFSVSQDEVVEIAAIRLVDGKKQAR-FHAYI--TNTVSVGESERIHGHSDRFL 521 Query: 71 KDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + +F EF++F ++ + HN FD+ + A+ Q+ + DTL + Sbjct: 522 AENGRNAKHVFGEFFEFVG--DSLLVGHNVGFDIKMVTAQAQKAGVSYPKKLQWEDTLEL 579 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 A R S R L L + +T H H A+ D Sbjct: 580 ANRFIESERYSLEVLAEHLNLT--HLPSHKAMDD 611 >gi|152975987|ref|YP_001375504.1| DNA polymerase III subunit epsilon [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024739|gb|ABS22509.1| DNA polymerase III, epsilon subunit [Bacillus cytotoxicus NVH 391-98] Length = 299 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 11/164 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG NDRII++ AV ++ ++ F F+ P R L GIT+ Sbjct: 11 VVIDFETTGFHPYNDRIIQVAAVRYRNHELADQ-FVSFVNPE-RSIPSRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIIDTLS 128 + D P+ + F F N +AHNA FD+ F+ + + R +P +++IDT+ Sbjct: 69 VSDAPTVQEVLPLFLAFLG--NDTIVAHNASFDMRFLKSNMSRFQLG--EPNNKVIDTVL 124 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +A++ + N L +L + GI + S H AL D + VY Sbjct: 125 LAKKYMKHAPNFKLETLKRMLGIRL---SSHNALDDCITCAAVY 165 >gi|308174031|ref|YP_003920736.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens DSM 7] gi|307606895|emb|CBI43266.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens DSM 7] gi|328552843|gb|AEB23335.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus amyloliquefaciens TA208] gi|328912360|gb|AEB63956.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens LL3] Length = 928 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 9/173 (5%) Query: 5 NKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN + P +L Sbjct: 2 NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-QDIPPFIEQLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+ ++++ F ++ E + + A ++AHN FD+GF+ EL + D + Sbjct: 60 GISTGMVENELPFEAVAEEIFHLLD--GAYFVAHNIHFDLGFVRHELSEAGYELTD-CEV 116 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ ++R P L LC + I H H A D+ + +++ ++ Sbjct: 117 LDTVELSRIVFPGFEGYKLGELCAE--LNIVHDRPHRADSDAEVTGLIFLDIL 167 >gi|154148582|ref|YP_001406342.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC BAA-381] gi|153804591|gb|ABS51598.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC BAA-381] Length = 262 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 12/160 (7%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDEFLK 71 DIET G K +IIEIGA+++ N TF+ F+ + N PE ++L GI LK Sbjct: 79 DIETNGGIDKG-QIIEIGAIKVRAKEILN-TFKTFVYAS---NIPENIVELTGIHTNDLK 133 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + P S++ F F + + ++AHN KFD GFI+ LQ+I L +R IDT+ +A+ Sbjct: 134 NAPHLSNVLENFRLFLGD--SVFVAHNVKFDYGFISESLQKIGFGGL-LNRRIDTIDLAK 190 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R + + L+SL + GI H H A D+ +++ Sbjct: 191 RTIAAQKYGLSSLKELLGIENEH---HRAFSDALSCYEIF 227 >gi|253682510|ref|ZP_04863307.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum D str. 1873] gi|253562222|gb|EES91674.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum D str. 1873] Length = 1443 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 92/164 (56%), Gaps = 9/164 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG S+ D+IIEIGAV++ + + + +F F+ P K +L IT++ Sbjct: 431 VVFDLETTGFSSEYDKIIEIGAVKIKNGNIID-SFSTFVNPE-IKIPYNITELTSITNDD 488 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ + ++ +F +F +++ +AHNA FD+ FI ++ D ++DT+ + Sbjct: 489 VKNADTIDNVLPKFMEFC--KDSVLVAHNANFDMSFIRKNCNDLSIDI--NYTVMDTVPL 544 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 A+ P R LN++ K G+++ + H A+ D+ +D+ + Sbjct: 545 AKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATADILL 586 >gi|261496609|ref|ZP_05992989.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307812|gb|EEY09135.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE] Length = 221 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 20/192 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGR 53 + KN+ R +V D+ET GL+++ D ++E+ A+ + +D Y ++ + P G Sbjct: 20 LLKNRFRGYLPVVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGA 79 Query: 54 KNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGF 105 +PE+LK +GI D L+ + + E + Q A +AHNA FD F Sbjct: 80 NINPESLKFNGIDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAIIVAHNATFDQSF 139 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A ++RIN +DP P + DT ++A + + L C+ I H AL D Sbjct: 140 LQAAIKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQAAQINFDGHQAHSALYD 197 Query: 164 SHLLSDVYIKMM 175 + ++++ M+ Sbjct: 198 TEKTTELFCAMV 209 >gi|95929273|ref|ZP_01312017.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] gi|95134771|gb|EAT16426.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] Length = 217 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 7/166 (4%) Query: 10 IVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ET+G+ + DR IE+GAV++ D + F+ + P G + S + GIT++ Sbjct: 11 IVLDFETSGMAPQRGDRAIEVGAVKVND-GRIVDHFESLMNP-GFRVSSFIEEFTGITND 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P + +F +F A +AHNA FD F+ +E RI + L R ++ Sbjct: 69 ELRRAPRCEEVMHQFSEFIG--GAPLVAHNASFDQRFLKSEFARIGECKL--LRFGCSML 124 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR +P + N + Y S H AL D+ + + ++++M Sbjct: 125 VARRLYPEAPNHKLATLVAYKNLPSQGVFHRALADAEMTAHLWMEM 170 >gi|323489901|ref|ZP_08095123.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2] gi|323396408|gb|EGA89232.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2] Length = 202 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 11/133 (8%) Query: 4 KNKMRKI----VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 K+ M+K+ V D ETTGL ND+II+IGAV+ +++ + T + + P R S Sbjct: 33 KSSMQKVENYVVLDFETTGLRPGNDKIIQIGAVKYVNHER-EETMYLMVNPQ-RSISNTI 90 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 ++ GIT++ +++ P I + F + IAHNA FD+GF+ A L+ I P+ Sbjct: 91 TRITGITNKDVENAPVIEDIAHDLITFIG--DLPIIAHNAPFDMGFLYA-LEDIT--PIP 145 Query: 120 PSRIIDTLSIARR 132 +IDT+ +AR+ Sbjct: 146 EYTVIDTVKLARK 158 >gi|212635482|ref|YP_002312007.1| DNA polymerase III [Shewanella piezotolerans WP3] gi|212556966|gb|ACJ29420.1| DNA polymerase III [Shewanella piezotolerans WP3] Length = 222 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 85/169 (50%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL ++ DR IEIGAV+L +R FQ + P G + S GI+++ Sbjct: 25 IVLDFETTGLSPNQGDRAIEIGAVKLQHGIVVDR-FQELMNP-GFRISGFIESYTGISNQ 82 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + F DF + N +AHNA FD F++AEL I ++ ++ Sbjct: 83 MLNNAAPCEEVMERFADFIADYN--MVAHNASFDQRFLDAELNSIGREY--RGEFACSML 138 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKMM 175 IARR + + N L SL I H H AL DS + +D+++ M+ Sbjct: 139 IARRLYQEAPNHKLGSLINYK--QIKHDGVFHRALADSEMTADLWLVML 185 >gi|300767360|ref|ZP_07077272.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495179|gb|EFK30335.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 936 Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 19/181 (10%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPE 58 M K V DIETTG K+ DRII+IG + K N+ F N P Sbjct: 1 MTMKPNTTYAVVDIETTGTSVKDGDRIIQIGCA----FVKNNKIINTFATDVNPLTTVPA 56 Query: 59 ALK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 ++ L GI++ ++ P F + + Q ++AHN FD+ FIN+ELQR+ Sbjct: 57 VIENLTGISNARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPE 114 Query: 118 LDPSRIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L P + +DT+S+++ P++ + DL+ L + I H H A D+ + ++I Sbjct: 115 L-PIQAVDTVSLSQILLPTASSFRLRDLSHL-----LAIDHNHPHSADSDAIATAHLFIT 168 Query: 174 M 174 + Sbjct: 169 L 169 >gi|39996485|ref|NP_952436.1| exonuclease [Geobacter sulfurreducens PCA] gi|39983365|gb|AAR34759.1| exonuclease [Geobacter sulfurreducens PCA] gi|298505487|gb|ADI84210.1| 3'-to-5' exonuclease, putative [Geobacter sulfurreducens KN400] Length = 181 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 12/185 (6%) Query: 4 KNKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 KN + D+ETTGL DR++E+ AV L+D + F + K P + + Sbjct: 2 KNHHLQAAIDVETTGLFPGYGDRVVEVAAV-LVDEGQIVSEFSSLI--RVTKAIPRHVSM 58 Query: 63 -HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HGIT++ L D+P ++ DF A +AHNA+FD+ F+ E R+ L+ S Sbjct: 59 IHGITNDMLADQPLPEEVYPALGDFIG--TALLVAHNARFDLAFLRHEFGRLGLS-LN-S 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R TL +ARR+ P + + L ++ + +G H AL D+ L + V+ ++ GG Sbjct: 115 RSACTLELARRRLPELTDHRLETVYQHLFGAVPEGTRCHRALDDARLTARVWGELG-GGK 173 Query: 180 QINFG 184 + G Sbjct: 174 AMKSG 178 >gi|291276271|ref|YP_003516043.1| DNA polymerase III subunit epsilon [Helicobacter mustelae 12198] gi|290963465|emb|CBG39295.1| Putative dna polymerase III epsilon subunit [Helicobacter mustelae 12198] Length = 247 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 20/165 (12%) Query: 13 DIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGIT 66 DIETTG + IIEIGA+ E++D TF+ + ++ PE + +L GI Sbjct: 71 DIETTGSKPNHSSIIEIGAIKYHGGEIID------TFETLVFS---QSVPENITELTGID 121 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L D PS + F F N+ ++AHN FD GFI+ L R N+ L R+ T Sbjct: 122 AGMLADAPSEREVLQRFRKFLG--NSVFVAHNVVFDYGFISDRLLRYNEPYLLNPRLC-T 178 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + +ARR S+R L L GI I +H AL D+ + V+ Sbjct: 179 VELARRGILSARYSLGHLNAFLGIGID--KQHRALSDAFICLKVF 221 >gi|269115238|ref|YP_003303001.1| DNA polymerase III polC-type [Mycoplasma hominis] gi|268322863|emb|CAX37598.1| DNA polymerase III polC-type [Mycoplasma hominis ATCC 23114] Length = 1437 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D IIE GA + + + T + Q FL R+ S ++ I +E Sbjct: 408 VVFDLETTGLSPRLDDIIEFGATIVKNNTITQK-IQFFL-QTKRELSAFTVESSHINNEM 465 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTL 127 LK+ + + ++ ++ A +AHNA FD+ F + ++ LD S+I +DTL Sbjct: 466 LKNGYAQEEGIKKIYEILKDKIA--VAHNANFDINFCKEKFSKLG---LDNSKIFGLDTL 520 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++ +P R+ L + KR+ I H D+++L+ ++IKM+ Sbjct: 521 ALSYFLNPDEFRHSLGYVAKRFNIIYDTTVAHRGDYDANVLAKIWIKMI 569 >gi|89898431|ref|YP_515541.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56] gi|89331803|dbj|BAE81396.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56] Length = 228 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRIIEI A + T +F ++ P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIIEIAAFN----NVTKESFVTYVNPK-IPIPEEASKIHGITTST 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + +F DF + A +AHN FD + E +R + +PL R ID+L Sbjct: 60 VASAPDFPEAYKQFRDFCGNE-AVLVAHNNDGFDFPLLEKECRRHSLEPLT-LRTIDSLK 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A++ P +++L L + YG + H AL D L DV+ ++ Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHDVFSALI 163 >gi|296166059|ref|ZP_06848506.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898580|gb|EFG78139.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 648 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 35/225 (15%) Query: 10 IVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTG +K D I EIGAV++ F + P R P+ ++L Sbjct: 44 VVVDLETTGGRTKATGGNAPDAITEIGAVKVRGGVVLGE-FATLVDPE-RSIPPQIVRLT 101 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + D P ++ F +F +A +AHNA FD+GF+ A R + P ++ Sbjct: 102 GITTAMVSDAPRIDAVLPMFLEFAG--DAVLVAHNAGFDIGFLRAAAARCDIAWPRP-KV 158 Query: 124 IDTLSIARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176 + T+ +ARR + PS R L +L + + ++ + H AL D+ +V ++ V Sbjct: 159 LCTVRLARRVLSREEAPSVR--LGALARLF--AVAAQPTHRALDDARATVEVLHALIERV 214 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 G N G T + + + +P+++ +R K R+ E L Sbjct: 215 G----NQGVHT-----YADLRSYLPDVTPTQRRK----RVLAEGL 246 >gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Frankia alni ACN14a] gi|111152024|emb|CAJ63748.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a] Length = 580 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 77/167 (46%), Gaps = 16/167 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + I EIGAV + + + P+ P + GITD Sbjct: 22 VVVDLETTGTSAATSEITEIGAVRVRG-GEVLAEMSTLVRPSA-GIPPMVSVITGITDAM 79 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128 + P+ + + F +F + A +AHNA FD+GF+ A QR P P+ +DTL Sbjct: 80 VATAPAEAEVVPTFLEF--ARGAVLVAHNAPFDLGFLRAAAQRCGYPP--PAWEHLDTLR 135 Query: 129 IARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 IARR + P R L SL + + S H AL D+ DV Sbjct: 136 IARRLVSRDEAPDCR--LASLARLF--RSSTEPCHRALADARATVDV 178 >gi|324995504|gb|EGC27416.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK678] Length = 814 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + E +K Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56 Query: 62 -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 57 ELTGLDDERLSQAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAESLFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165 >gi|220907711|ref|YP_002483022.1| UvrD/REP helicase [Cyanothece sp. PCC 7425] gi|219864322|gb|ACL44661.1| UvrD/REP helicase [Cyanothece sp. PCC 7425] Length = 829 Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 15/155 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP--EALKLHGI 65 R +VFD+ETTG D +IE+ A+ L++ + F ++ R P E ++HG Sbjct: 460 RLVVFDVETTGFSGAADEVIELAAIA-LEHGQIREEFNRYI----RNTVPVGETQQVHGY 514 Query: 66 TDEFLKD--KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 +D+FL +P+ +++F EF +F Q A + HN FD+ + A +R+ + P R Sbjct: 515 SDDFLATHGQPA-ATVFREFCEF--SQGAVLVGHNLGFDIKMVTAHARRVGIEFPSP-RW 570 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGI--TISHRS 156 DTL++A R S L +L + T +HR+ Sbjct: 571 EDTLNLAHRFIQSENYKLATLASSLNLSATPTHRA 605 >gi|260769807|ref|ZP_05878740.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972] gi|260615145|gb|EEX40331.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972] Length = 205 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL + DR IEIGAV+L+D + TFQ + P G + S GIT+ Sbjct: 9 IVLDFETTGLSPNMGDRAIEIGAVKLVD-GQVAGTFQQLMNP-GFRVSGFIEGYTGITNT 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ + +EF F + +AHNA FD F++AE RI P + ++ Sbjct: 67 MLRTALPCEEVMAEFAHFIGD--TPLVAHNASFDKRFLDAEFDRIGVR--YPGQFACSML 122 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR + + L L R+ + + H AL DS + + +++ M+ Sbjct: 123 IARRLIQNAPTHKLGDLV-RFKQIENDGTFHRALADSQMTASLWMLMV 169 >gi|114047347|ref|YP_737897.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7] gi|113888789|gb|ABI42840.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7] Length = 239 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 10/184 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL ++ R IEIGAV L++ + F + P R NS GI+++ Sbjct: 41 VVLDFETSGLSPNQGARAIEIGAV-LIEQGQITARFSELMNPGFRINS-FIEDYTGISNQ 98 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + F F + + +AHNA FD F++AE +I P + +L Sbjct: 99 MLAHAAPCAEVMARFAAFIGKHH--LVAHNAAFDQRFLDAEFAQIGHQ--YPGQFGCSLL 154 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +ARR +P + N + R+ + + H AL D+ + ++++M+ Q G+ Sbjct: 155 LARRLYPEAINHQLATLVRHKQLPTDGTFHRALADAEMTGHLWLRMLADLKQ---GYAIT 211 Query: 189 EDRF 192 E F Sbjct: 212 EPPF 215 >gi|226227286|ref|YP_002761392.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27] gi|226090477|dbj|BAH38922.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27] Length = 214 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 13/215 (6%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG + DRI EI V++ + + + P R P L IT + Sbjct: 8 VVDVETTGTRAAGGDRITEIAIVQV-QGGQVGEVYSQLVNPE-RPIPPYITSLTHITWDM 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D+P+F I S D + + ++AHNA FD F++ E++R + L R+ T+ Sbjct: 66 VRDQPTFREITSNVLDRL--RGSIFVAHNAPFDWRFVSEEVRRGSGQELSGPRLC-TVRF 122 Query: 130 ARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 AR P SR L+ + + +GI I+ HR+ AL +H L +M+ S+ Sbjct: 123 ARAALPQLSRRSLDHVTRYFGIEIAARHRAAGDALATAHALC----RMLNIASEHGVESW 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 T F T P + +R + +TK+++ Sbjct: 179 TALQAFVDGPVGTRPRTASDRRRRAFPLPVTKDDI 213 >gi|78224248|ref|YP_385995.1| DNA polymerase III subunit epsilon [Geobacter metallireducens GS-15] gi|78195503|gb|ABB33270.1| DNA polymerase III, epsilon subunit [Geobacter metallireducens GS-15] Length = 218 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 19/178 (10%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K ++ D ETTGL DR IEIGAV + + +R FQ + P G++ S + Sbjct: 2 GKFTAVILDFETTGLSPGYGDRAIEIGAVLVRNNRIVDR-FQSLMNP-GKRVSGFIEEYT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT+E L P + F F N +AHNA FD F++AEL RI + Sbjct: 60 GITNEMLAKAPPAEQVMERFASFIAGHN--LVAHNASFDRRFLDAELSRIGRR--RTGDF 115 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK------HGALLDSHLLSDVYIKMM 175 ++ ARR + ++ N R +SH S H AL D+ + + ++ M+ Sbjct: 116 ACSMLAARRIYTNAPN------HRLETLVSHLSLQTDGVFHRALADAEMTAQLWTAMI 167 >gi|15618325|ref|NP_224610.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae CWL029] gi|15835943|ref|NP_300467.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138] gi|16752629|ref|NP_444893.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39] gi|4376690|gb|AAD18554.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029] gi|8163413|gb|AAF73657.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila pneumoniae AR39] gi|8978782|dbj|BAA98618.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138] gi|269303286|gb|ACZ33386.1| exonuclease, DNA polymerase III, epsilon subunit family [Chlamydophila pneumoniae LPCoLN] Length = 237 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG + DRIIEI A S T+ +F ++ P EA K+HGIT + Sbjct: 10 IFYDTETTGTQIERDRIIEIAAYN----SVTDESFLTYVNPEIPIPD-EASKIHGITTDA 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F + F F E + +N FD + E +R + +PL +R ID+L Sbjct: 65 VLSAPKFPEAYEGFRKFCGEDSILVAHNNDGFDFPLLGKECRRHSLEPLT-NRTIDSLKW 123 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A++ P +++L L + YG + H AL D +L V+ ++ Sbjct: 124 AQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVVILHKVFTSLI 168 >gi|242077240|ref|XP_002448556.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor] gi|241939739|gb|EES12884.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor] Length = 283 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 16/179 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG ++RI+E +L + TFQ + P R A +L+ IT E Sbjct: 86 LVFDLETTGFFHVDNRIVEFALRDL--SGGKDCTFQTLINPE-RDVPIYASELNNITTEL 142 Query: 70 L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121 + D P FS + + + A WIAHNAK FDV F+N E R + Sbjct: 143 VCRPDVPRFSDVLPILLAYVRSRQAPGKPVLWIAHNAKGFDVPFLNQEFDRCSAQVPSDW 202 Query: 122 RIIDTLSIAR--RKHPSSRNDLN--SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +D+L +AR +K +N +N +L +RYG++ S H A+ D L ++ K+ + Sbjct: 203 LFVDSLRLARKLKKIDGKKNLVNLVALGERYGLS-SEGPSHRAMPDVEALCNILPKITL 260 >gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 595 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 11/160 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + RI E+GAV + F + P G L GIT Sbjct: 27 VVLDLETTGTSASGSRITEVGAVRVRGGEVVGE-FATLVNP-GTPIPANITLLTGITQSM 84 Query: 70 LKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127 + P + F + E + +AHNA FD GF+ A +R D P P ++DTL Sbjct: 85 VASAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPGYP--VVDTL 142 Query: 128 SIARR--KHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 +AR +RN L +L +G+ ++ H AL D+ Sbjct: 143 RLARAVLARGETRNHRLATLAAYFGVPVA--PNHRALEDA 180 >gi|53728911|ref|ZP_00134639.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207670|ref|YP_001052895.1| ribonuclease T [Actinobacillus pleuropneumoniae L20] gi|165975638|ref|YP_001651231.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250752|ref|ZP_07336948.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251713|ref|ZP_07533617.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|166228560|sp|A3MYQ4|RNT_ACTP2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|126096462|gb|ABN73290.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875739|gb|ABY68787.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650422|gb|EFL80582.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860799|gb|EFM92808.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 218 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 26/193 (13%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNG 52 KN+ R ++ D+ET GL+++ D ++E+ A+ L+ K + Q F G Sbjct: 12 KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPF---EG 68 Query: 53 RKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104 +P++LK +GI D L+ + E + Q A +AHNA FD Sbjct: 69 ANINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQA 128 Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ A ++RIN +DP P + DT ++A + + L C+ I + H AL Sbjct: 129 FVQAAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKIPFDGKQAHSALY 186 Query: 163 DSHLLSDVYIKMM 175 D+ ++++ M+ Sbjct: 187 DTEKTTELFCAMV 199 >gi|284032480|ref|YP_003382411.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM 17836] gi|283811773|gb|ADB33612.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM 17836] Length = 415 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 9/167 (5%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL R+IEI V L + + + L P R P+ +HGI Sbjct: 4 VIDTETTGLLPGHRHRVIEIAVVLLDQHGRFEHEWVTLLNPQ-RDLGPQ--HIHGILTAD 60 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTLS 128 + P F + + + HN +FD+GF+ AE R+ PL R + T++ Sbjct: 61 VLAAPEFVDVARHLGALLAGRMV--VGHNVEFDLGFLRAEFARLGHVVPLITERSMCTMA 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A +P S+ L + C GI++ + H AL D+ ++++ + Sbjct: 119 LAGYLYPGSKRTLGACCAAAGISL--QGWHSALADTRATAELFATYL 163 >gi|303252005|ref|ZP_07338176.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247168|ref|ZP_07529219.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649435|gb|EFL79620.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856306|gb|EFM88458.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 218 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 26/193 (13%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNG 52 KN+ R ++ D+ET GL+++ D ++E+ A+ L+ K + Q F G Sbjct: 12 KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPF---EG 68 Query: 53 RKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104 +P++LK +GI D L+ + E + Q A +AHNA FD Sbjct: 69 ANINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQA 128 Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ A ++RIN +DP P + DT ++A + + L C+ I + H AL Sbjct: 129 FVQAAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKIPFDGKQAHSALY 186 Query: 163 DSHLLSDVYIKMM 175 D+ ++++ M+ Sbjct: 187 DTEKTTELFCAMV 199 >gi|295677334|ref|YP_003605858.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] Length = 382 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 10 IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67 IVF D+ETTG + RI E+G VE+ + + V + ++ P ++ L GIT+ Sbjct: 15 IVFVDLETTGGSTSEHRITEVGVVEVGPAGVSRWSSLV----DPQQPIPSFIQQLTGITN 70 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++ P+F SI ++ N + ++AHNA FD GF+ +E +R DP ++ T+ Sbjct: 71 DMVRGAPTFESIAPALFERLNGKL--FVAHNASFDRGFLRSEFRRAGIA-FDPD-VLCTV 126 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 127 RLSRALFPGEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172 >gi|257464923|ref|ZP_05629294.1| ribonuclease T [Actinobacillus minor 202] gi|257450583|gb|EEV24626.1| ribonuclease T [Actinobacillus minor 202] Length = 216 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 31/206 (15%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCP 50 + KN+ R ++ D+ET GL+++ D ++EI A+ L+ K + Q F Sbjct: 10 LLKNRFRGYLPVIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPF--- 66 Query: 51 NGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFD 102 G + ++LK +GI D L+ + E + + Q A +AHNA FD Sbjct: 67 EGANINQDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRKAMKDQGCQRAVIVAHNAAFD 126 Query: 103 VGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 GF+ A +RIN +DP P + DT ++A + + L C+ I + H A Sbjct: 127 QGFLQAAAKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMANIAFDGKQAHSA 184 Query: 161 LLDSHLLSDVYIKMM-----VGGSQI 181 L D+ ++++ M+ +GG I Sbjct: 185 LYDTEKTTELFCTMVNRLKDLGGYPI 210 >gi|148245142|ref|YP_001219835.1| DNA polymerase III subunit epsilon [Clostridium kluyveri DSM 555] gi|146337022|gb|ABQ23633.1| DNA polymerase III, epsilon subunit related exonuclease [Clostridium kluyveri DSM 555] Length = 441 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 103/225 (45%), Gaps = 36/225 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D+ETTGL+ D IIEI A E++D T +VF+ PN ++ Sbjct: 132 VVVDLETTGLEPTRDYIIEIAAAKYENNEIIDTYTTLVNPEVFIPPN-------ITNINH 184 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I ++ +KD P + F +F + +AHNA FD+ F+NA L + +P II Sbjct: 185 IDNDMVKDCPEIKEVLPGFMNFIGQ--LPLVAHNAPFDIKFLNANLALLGLYLNNP--II 240 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL I+R+ N K Y + I + H AL D ++ +Y++ Sbjct: 241 DTLPISRKLFSEIENHKLGTIKEY-LNIDVQDSHRALPDCYVCGQIYLE----------- 288 Query: 185 FKTNEDRFFKEEKKTVPNISL---LKRDKPLFTRITKEELDEHDK 226 + T E + KK + NI L + +K I KE L +H+K Sbjct: 289 YSTKE-----KNKKALANIKLHSDIGLNKEECYSIVKEILKKHNK 328 >gi|33241759|ref|NP_876700.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae TW-183] gi|33236268|gb|AAP98357.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila pneumoniae TW-183] Length = 232 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG + DRIIEI A S T+ +F ++ P EA K+HGIT + Sbjct: 5 IFYDTETTGTQIERDRIIEIAAYN----SVTDESFLTYVNPEIPIPD-EASKIHGITTDA 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F + F F E + +N FD + E +R + +PL +R ID+L Sbjct: 60 VLSAPKFPEAYEGFRKFCGEDSILVAHNNDGFDFPLLGKECRRHSLEPLT-NRTIDSLKW 118 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A++ P +++L L + YG + H AL D +L V+ ++ Sbjct: 119 AQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVVILHKVFTSLI 163 >gi|28378418|ref|NP_785310.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1] gi|28271254|emb|CAD64158.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1] Length = 934 Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 19/171 (11%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK-LHGITD 67 V DIETTG K+ DRII+IG + K N+ F N P ++ L GI++ Sbjct: 9 VVDIETTGTSVKDGDRIIQIGCA----FVKNNKIINTFATDVNPLTTVPAVIENLTGISN 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P F + + Q ++AHN FD+ FIN+ELQR+ L P + +DT+ Sbjct: 65 ARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPEL-PIQAVDTV 121 Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S+++ P++ + DL+ L + I H H A D+ + ++I + Sbjct: 122 SLSQILLPTASSFRLRDLSHL-----LAIDHNHPHSADSDAIATAHLFITL 167 >gi|262393711|ref|YP_003285565.1| ribonuclease T [Vibrio sp. Ex25] gi|262337305|gb|ACY51100.1| ribonuclease T [Vibrio sp. Ex25] Length = 214 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D T + P G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLKMDEDGVLHPASTIHFHVEPFEGANLEKEALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D + L+ S E + EQ A +AHNA FD+GF+NA +R + Sbjct: 80 IRDPYSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLGFVNAANERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCG 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|134292561|ref|YP_001116297.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] gi|134135718|gb|ABO56832.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 205 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL DR EI + L D +R +Q + GR+ + + L GIT+E Sbjct: 6 VLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLM-NAGRRIPSDVVALTGITNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P S + E F +AHNA FD F AEL + P T+ + Sbjct: 64 IATAPPVSKVMKEAAAFVGSHPV--VAHNAGFDKRFWQAELGSLGVAADHP--FACTMLV 119 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR +P +R+ L+SL + + R+ H A++D+ + S ++ +M Sbjct: 120 ARRLYPHARSHRLSSLADLLRLPQAGRA-HRAMVDAEIASHLWCRM 164 >gi|308180572|ref|YP_003924700.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046063|gb|ADN98606.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 934 Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 19/171 (11%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK-LHGITD 67 V DIETTG K+ DRII+IG + K N+ F N P ++ L GI++ Sbjct: 9 VVDIETTGTSVKDGDRIIQIGCA----FVKNNKIINTFATDVNPLTTVPAVIENLTGISN 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P F + + Q ++AHN FD+ FIN+ELQR+ L P + +DT+ Sbjct: 65 ARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPEL-PIQAVDTV 121 Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S+++ P++ + DL+ L + I H H A D+ + ++I + Sbjct: 122 SLSQILLPTASSFRLRDLSHL-----LAIDHNHPHSADSDAIATAHLFITL 167 >gi|29840147|ref|NP_829253.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC] gi|29834495|gb|AAP05131.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC] Length = 228 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRIIEI A + T ++F ++ P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIIEIAAYN----NVTKQSFVTYVNPEIPIPE-EASKIHGITTST 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + +F DF + A +AHN FD + E +R + +PL R ID+L Sbjct: 60 VSSAPKFPEAYKQFCDFCGNE-AILVAHNNDSFDFPLLEKECRRHSLEPLS-LRTIDSLK 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A++ P +++L L + YG + H AL D L +V+ ++ Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLYNVFSALI 163 >gi|90409038|ref|ZP_01217165.1| ribonuclease T [Psychromonas sp. CNPT3] gi|90309845|gb|EAS38003.1| ribonuclease T [Psychromonas sp. CNPT3] Length = 204 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-ELLD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ DIET+GL+S+ D I+EI A+ +D Y + +T + P G P+AL+ G Sbjct: 15 VIIDIETSGLNSQTDAILEIAAIFPAMDEQGYLYSAQTIHFNVQPFEGANMDPKALEFTG 74 Query: 65 ITDEF--LKDKPSFSSIFSEFWDF------FNEQN-AEWIAHNAKFDVGFINAELQRIN- 114 I D F L+ + +E + N+ N + +AHNA FD GFIN +R N Sbjct: 75 I-DPFNPLRGAIDEKEVLTEIFKLVRKHQKINDCNRSILVAHNAAFDQGFINKASERCNF 133 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT S+A + L C++ I ++ H AL D+ + +D++ Sbjct: 134 KRIPFHPFVCFDTASMAGLM--LGQTVLAKACEQANIDYNNEEAHSALYDTQVTADLFFY 191 Query: 174 MM 175 M+ Sbjct: 192 MV 193 >gi|326407322|gb|ADZ64393.1| ATP-dependent DNA helicase DinG [Lactococcus lactis subsp. lactis CV56] Length = 794 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 94/177 (53%), Gaps = 18/177 (10%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 KN R V D+E T S ++II+IG V L++ + TF + P+ P +L Sbjct: 2 KNMTRYAVVDLEATDAHSSENKIIQIGIV-LVEDGEIVETFSTEVNPH-EPLLPRISELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-----FINAELQRINKDPL 118 G++D+ LK P FS + ++ + ++ ++AHNA+FD G F+NA L+ Sbjct: 60 GLSDKQLKTAPEFSEVAAKVRELLT--DSVFVAHNARFDYGLLEKSFLNAGLE------F 111 Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +DT+ +AR +P+ + L SL ++ + ++H H A+ D++ +++ +K+ Sbjct: 112 NEMLRVDTVDLARVFYPTFEKYGLESLSEK--LDLAHDHPHAAVSDAYATAELLLKI 166 >gi|225419839|ref|ZP_03762142.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme DSM 15981] gi|225041521|gb|EEG51767.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme DSM 15981] Length = 255 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 110/240 (45%), Gaps = 22/240 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIETTGL+ + D+I EI A+ ++D + R F + P GR ++L GITD Sbjct: 17 VAIDIETTGLEPRLDKITEIAALRVVDGAVEGR-FVTLVNP-GRPLGERIVELTGITDGM 74 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128 L P+ + F + + HN FD F+ +N+ LD R IDTL+ Sbjct: 75 LAGAPAIGDVIGPLVRFCG--DLPLLGHNILFDYSFLKR--AAVNQG-LDFQREGIDTLN 129 Query: 129 IARRKHPSS-RNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + R P + +L++ C Y I +HR++ A L +HLL Y K++ G + Sbjct: 130 LCRAFMPGEHKKNLSAACAFYCIEQVEAHRAEADA-LSAHLL---YQKLLEGRGEGREEL 185 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRYIS 242 T + +K +K+ + KR K + K + I TL +N + DR +S Sbjct: 186 FTPKSLIYKAKKEQ----PVTKRQKEYLQDLIKCHRIDVTVQIDTLSRNEASRMIDRILS 241 >gi|219684048|ref|YP_002470430.1| hypothetical protein CKR_P20 [Clostridium kluyveri NBRC 12016] gi|219570556|dbj|BAH08539.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 444 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 103/225 (45%), Gaps = 36/225 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D+ETTGL+ D IIEI A E++D T +VF+ PN ++ Sbjct: 135 VVVDLETTGLEPTRDYIIEIAAAKYENNEIIDTYTTLVNPEVFIPPN-------ITNINH 187 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I ++ +KD P + F +F + +AHNA FD+ F+NA L + +P II Sbjct: 188 IDNDMVKDCPEIKEVLPGFMNFIGQ--LPLVAHNAPFDIKFLNANLALLGLYLNNP--II 243 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL I+R+ N K Y + I + H AL D ++ +Y++ Sbjct: 244 DTLPISRKLFSEIENHKLGTIKEY-LNIDVQDSHRALPDCYVCGQIYLE----------- 291 Query: 185 FKTNEDRFFKEEKKTVPNISL---LKRDKPLFTRITKEELDEHDK 226 + T E + KK + NI L + +K I KE L +H+K Sbjct: 292 YSTKE-----KNKKALANIKLHSDIGLNKEECYSIVKEILKKHNK 331 >gi|254556626|ref|YP_003063043.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1] gi|254045553|gb|ACT62346.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1] Length = 934 Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 19/171 (11%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALK-LHGITD 67 V DIETTG K+ DRII+IG + K N+ F N P ++ L GI++ Sbjct: 9 VVDIETTGTSVKDGDRIIQIGCA----FVKNNKIINTFATDVNPLTTVPAVIENLTGISN 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P F + + Q ++AHN FD+ FIN+ELQR+ L P + +DT+ Sbjct: 65 ARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPEL-PIQAVDTV 121 Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S+++ P++ + DL+ L + I H H A D+ + ++I + Sbjct: 122 SLSQILLPTASSFRLRDLSHL-----LAIDHNHPHSADSDAIATAHLFITL 167 >gi|332366322|gb|EGJ44074.1| DNA polymerase III [Streptococcus sanguinis SK1059] Length = 267 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + E +K Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56 Query: 62 -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 57 ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165 >gi|296160037|ref|ZP_06842857.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] gi|295889783|gb|EFG69581.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] Length = 383 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 10 IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67 IVF D+ETTG + RI E+G VE+ + + V + ++ P ++ L GIT+ Sbjct: 15 IVFVDLETTGGSTAEHRITEVGVVEVGPAGVSRWSSLV----DPQQPIPSFIQQLTGITN 70 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P+F +I ++ N + ++AHNA FD GF+ E +R+ DP ++ T+ Sbjct: 71 AMVRGAPTFEAIAPALFERLNGKL--FVAHNASFDRGFLRGEFRRVGLA-FDPD-VLCTV 126 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P+ R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 127 RLSRALFPAEKRHGLDALVERHTLVPSDR--HRALADADLIWQFWQRL 172 >gi|190149453|ref|YP_001967978.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307260640|ref|ZP_07542332.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262772|ref|ZP_07544399.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914584|gb|ACE60836.1| DNA polymerase III, epsilon subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306869717|gb|EFN01502.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871917|gb|EFN03634.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 218 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 26/193 (13%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNG 52 KN+ R ++ D+ET GL+++ D ++E+ A+ L+ K + Q F G Sbjct: 12 KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPF---EG 68 Query: 53 RKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104 +P++LK +GI D L+ + E + Q A +AHNA FD Sbjct: 69 ANINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQA 128 Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ A ++RIN +DP P + DT ++A + + L C+ I + H AL Sbjct: 129 FVQAAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKIPFDDKQAHSALY 186 Query: 163 DSHLLSDVYIKMM 175 D+ ++++ M+ Sbjct: 187 DTEKTTELFCAMV 199 >gi|212702995|ref|ZP_03311123.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098] gi|212673583|gb|EEB34066.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098] Length = 173 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + D ET+G + + +G + D + T+ + + P+ R +HG+T Sbjct: 5 RYVALDFETSGYAAHS--ACAVGLCRIEDGAVTDSFYSLIRPPSSRVLFTH---VHGLTW 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDT 126 LKD P+F+ ++ + F E + +AHNA FD ++A Q + P P + T Sbjct: 60 PLLKDAPTFTEVWPQLAAFM-EGSRAILAHNAGFDRRVLHASCQALGLVQPQLP--FLCT 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 L ARR P + L+S+C +GI + H H A D+ +++Y+++ G Sbjct: 117 LKGARRSLPLASRALDSVCDYFGIPLDH---HHAGSDARACAEIYLRLHALG 165 >gi|291484662|dbj|BAI85737.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. natto BEST195] Length = 931 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 11/174 (6%) Query: 5 NKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN K+ P + +L Sbjct: 2 NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN--KSIPAFIEQL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI+++ ++++ F ++ E + + A ++AHN FD+GF+ EL + L Sbjct: 59 TGISNQMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELHKAGFQ-LPDCE 115 Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++R P L L + + + H H A D+ + ++++++ Sbjct: 116 VLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEIL 167 >gi|15673814|ref|NP_267989.1| DinG [Lactococcus lactis subsp. lactis Il1403] gi|12724861|gb|AAK05930.1|AE006413_6 ATP-dependent helicase DinG [Lactococcus lactis subsp. lactis Il1403] Length = 794 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 94/177 (53%), Gaps = 18/177 (10%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 KN R V D+E T S ++II+IG V L++ + TF + P+ P +L Sbjct: 2 KNMTRYAVVDLEATDAHSSENKIIQIGIV-LVEDGEIVETFSTEVNPH-EPLLPRISELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-----FINAELQRINKDPL 118 G++D+ LK P FS + ++ + ++ ++AHNA+FD G F+NA L+ Sbjct: 60 GLSDKQLKTAPEFSEVAAKVRELLT--DSVFVAHNARFDYGLLEKSFLNAGLE------F 111 Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +DT+ +AR +P+ + L SL ++ + ++H H A+ D++ +++ +K+ Sbjct: 112 NEMLRVDTVDLARVFYPTFEKYGLESLSEK--LDLAHDHPHAAVSDAYATAELLLKI 166 >gi|16079297|ref|NP_390121.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. 168] gi|221310156|ref|ZP_03592003.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. 168] gi|221314478|ref|ZP_03596283.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319400|ref|ZP_03600694.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. JH642] gi|221323676|ref|ZP_03604970.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. SMY] gi|1706437|sp|P54394|DING_BACSU RecName: Full=Probable ATP-dependent helicase dinG homolog gi|1146243|gb|AAB38451.1| 22.4% identity with Escherichia coli DNA-damage inducible protein ...; putative [Bacillus subtilis subsp. subtilis str. 168] gi|2634658|emb|CAB14156.1| damage inducible ATP-dependent helicase [Bacillus subtilis subsp. subtilis str. 168] Length = 931 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 11/174 (6%) Query: 5 NKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN K+ P + +L Sbjct: 2 NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN--KSIPAFIEQL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI+++ ++++ F ++ E + + A ++AHN FD+GF+ EL + L Sbjct: 59 TGISNQMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELHKAGFQ-LPDCE 115 Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++R P L L + + + H H A D+ + ++++++ Sbjct: 116 VLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEIL 167 >gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054] Length = 617 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 15/196 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ET+GL ++ DR++ I + + L P P + +HG+T E L Sbjct: 21 LVDVETSGLVARRDRVLSIAVLTFAPDGTQTGEYTTLLDPG---CDPGPVHVHGLTAERL 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P+F + + + +AHNA+FD F+ E R L +R + TL++ Sbjct: 78 RGAPAFEQVADRIGALLDGRV--MVAHNAQFDYDFLAHEFARARLH-LPVARRLCTLALN 134 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT-- 187 RR P L SL YG + H AL D+ +L+ ++ + +++ Sbjct: 135 RRVEPPVAGLSLASLAAYYG--VPQTRAHDALDDTRVLAGIFRSSLAEAARLGVPLPLVA 192 Query: 188 ----NEDRFFKEEKKT 199 + RF + KT Sbjct: 193 CPPRQDARFAPKPPKT 208 >gi|90410853|ref|ZP_01218868.1| ribonuclease T [Photobacterium profundum 3TCK] gi|90328484|gb|EAS44782.1| ribonuclease T [Photobacterium profundum 3TCK] Length = 223 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +SK D ++EI AV L +D + K T + P G EAL+ +G Sbjct: 20 VVIDVETAGFNSKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGAVLHKEALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFW-DFFNEQNAE------WIAHNAKFDVGFI--NAELQRI 113 I D F L+ S + E + EQ A +AHNA FD F+ +E R+ Sbjct: 80 IRDPFSPLRGAVSEETALKEIYKQIRKEQKAADCSRAIMVAHNANFDHSFVMEASERARL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L CK G+ ++ H AL D+ ++++ + Sbjct: 140 KRNPFHPFATFDTAALSGLAF--GQTVLAKACKTAGVAFDNKEAHSALYDTERTAELFCE 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|119718032|ref|YP_924997.1| exonuclease, RNase T and DNA polymerase III [Nocardioides sp. JS614] gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp. JS614] Length = 405 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 8/161 (4%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL K+DRI+EIG +E+ D R + + P R P +HGIT Sbjct: 6 IIDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATLVNPQ-RDVGPT--HIHGITARD 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+F + + +AHNA+FD F++ E +R + P+ + T+ + Sbjct: 63 VLDAPTFQEVAPYLIGSLAGRT--LVAHNARFDTQFLDYEFERASVGTRPPTPSLCTMQL 120 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + + L C + H +H AL D+ ++ + Sbjct: 121 SSSYLRGASRKLKDCC--VAANVPHADEHTALGDARAVAGL 159 >gi|321311709|ref|YP_004203996.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis BSn5] gi|320017983|gb|ADV92969.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis BSn5] Length = 931 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 11/174 (6%) Query: 5 NKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN K+ P + +L Sbjct: 2 NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN--KSIPAFIEQL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI+++ ++++ F ++ E + + A ++AHN FD+GF+ EL + L Sbjct: 59 TGISNQMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELHKAGFQ-LPDCE 115 Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++R P L L + + + H H A D+ + ++++++ Sbjct: 116 VLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEIL 167 >gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kronotskyensis 2002] gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 1402 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTG DS+ D+IIEIGAV++ + R F F+ P G K +L GI + Sbjct: 391 VVVDIETTGFDSQRDKIIEIGAVKIENGQIIER-FSTFVDPEG-KIPVRISELTGIYQDM 448 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + EF F + +AHNA+FD+GF+ + IDTL + Sbjct: 449 VDKAPKLNDAILEFEKF--ASGSILVAHNAQFDIGFLKKAYHECGI--IFDYTYIDTLEL 504 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +RR S + LN + + + + H H A D+ + ++ ++ Sbjct: 505 SRRLLTDLSSHKLNKVAEFLNVELKHH--HRADSDAETTAGIFTSLL 549 >gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium prausnitzii L2-6] Length = 1417 Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 16/194 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD ETTGLD + + EIGAV ++ + F F+ P G+ + + +L GIT+E + Sbjct: 399 VFDTETTGLDPGVEYLTEIGAV-IVRNGEVVEEFDTFVKP-GKPITSKITELTGITNEMV 456 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129 D PS + F DF + + + HNA FD+ F+ A +R + +P+ IDTL++ Sbjct: 457 ADAPSEAEALKAFLDFVDGRIL--VGHNAHSFDIRFLRAAAKRSGIE-FEPT-YIDTLTM 512 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH--------LLSDVYIKMMVGGSQI 181 A+ +P N ++ + + H A DS +L D+ K + S I Sbjct: 513 AQAMYPGLHNYKQGTINKH-LELPAYEAHRACEDSAALGRIFCVMLKDLEEKQVTAVSGI 571 Query: 182 NFGFKTNEDRFFKE 195 N G N + K+ Sbjct: 572 NTGLGGNREVLKKK 585 >gi|329569951|gb|EGG51706.1| exonuclease, DNA polymerase III, epsilon subunit family [Enterococcus faecalis TX1467] Length = 240 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V L+ K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCV-LVQDGKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|254517741|ref|ZP_05129797.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium sp. 7_2_43FAA] gi|226911490|gb|EEH96691.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium sp. 7_2_43FAA] Length = 188 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 7/133 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I+ K R I FD+ETTGL ND+IIE+GAV L + + + + +L A Sbjct: 21 IKNLKNRYIAFDVETTGLSPINDKIIEVGAV-LFENGEIIKKYS-YLVNLEVVIPASATA 78 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKDPL 118 ++ IT+E ++D ++++E F ++ E AHNA FD+ FI+ L R+ D Sbjct: 79 VNHITNEMIQDATKEDTVYAELVKFLDDALKEQTVICAHNATFDMKFISETLMRLGYDG- 137 Query: 119 DPSRIIDTLSIAR 131 +DTLS++R Sbjct: 138 -KIHYVDTLSLSR 149 >gi|332667256|ref|YP_004450044.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM 1100] gi|332336070|gb|AEE53171.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis DSM 1100] Length = 282 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 11/163 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FDIE TGL+ DRI++I ++ + + + + P G S EA+ +HGI + + Sbjct: 12 FDIEATGLNVVRDRIVQIAIIKYFKDGREPQELSLMINP-GIPISLEAILVHGIQPKDVA 70 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 +KP+F + + WDF NA+ +N+ +FD+ + E R+ + + R ID I Sbjct: 71 NKPTFQQLAQKIWDFIG--NADLAGYNSNRFDIPMLMEEFARVGMEFDVTKRRSIDVQRI 128 Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + P + + L C++ H H A+ D DV+ Sbjct: 129 FYKMEPRTLKAALKFYCEK-----EHEDAHDAMADVRATIDVF 166 >gi|325694226|gb|EGD36142.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK150] Length = 814 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + E +K Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56 Query: 62 -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 57 ELTGLNDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165 >gi|293390535|ref|ZP_06634869.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951069|gb|EFE01188.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1] Length = 217 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 26/195 (13%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCP 50 I K++ R +V D+ET GL++K D ++E+ A+ LL K + Q F Sbjct: 12 ILKHRFRGYLPVVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQPF--- 68 Query: 51 NGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFD 102 G PE+LK +GI D L+ S + SE + + Q + +AHNA FD Sbjct: 69 EGANIDPESLKFNGIDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFD 128 Query: 103 VGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 GF+ A QR+N ++P P DT +++ + L C+ I + H A Sbjct: 129 QGFLMAAAQRMNAKRNPFHPFSTFDTATLSGFMF--GQTVLVKACQAAKIPFDSQQAHSA 186 Query: 161 LLDSHLLSDVYIKMM 175 L D+ ++++ M+ Sbjct: 187 LYDTERTAELFCYMV 201 >gi|206603443|gb|EDZ39923.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II '5-way CG'] Length = 265 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 86/176 (48%), Gaps = 19/176 (10%) Query: 7 MRKIVFDIETTGL--DSKNDRIIEIG--AVELLDYSKTNRTF--QVFLCPNGRKNSPEAL 60 M+ D+ETTGL DS+ RIIE+G E + N T V + P+ Sbjct: 1 MKITFLDVETTGLLRDSRA-RIIELGFSTWENGKLLRKNSTLIKSVDVVPDNIS------ 53 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K++GIT E LKD P F ++ + F Q + +AHN FDVG +N EL N+ PL Sbjct: 54 KINGITTEMLKDAPGFEDVWKSIKEDF--QGSILVAHNLAFDVGMVNRELILANRIPLG- 110 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + IDTL ++R+ P S L + K GI + S H A+ D L + ++ Sbjct: 111 NMGIDTLPLSRKMLPELSSYRLGEIAKHMGIL--NESPHRAMGDLETLEKILSNLL 164 >gi|330444392|ref|YP_004377378.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58] gi|328807502|gb|AEB41675.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58] Length = 232 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 12/170 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 I +D ETTG DR+IEI A S T +F ++ N PE + K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRVIEIAAYN----SSTKESFVTYV--NPEIPVPEDSSKIHGITTA 58 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+F + F F + +N FD+ + E QR + +PL+ R ID+L Sbjct: 59 MVSSAPTFPEAYHNFKQFCGSASILVAHNNDNFDLPLLQKECQRYSLEPLN-LRTIDSLK 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 A++ P +++L L + YG + H AL D L V+ +VG Sbjct: 118 WAKKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHKVF-SALVG 164 >gi|239928032|ref|ZP_04684985.1| DNA polymerase III [Streptomyces ghanaensis ATCC 14672] gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 631 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ET+GL ++ DR++ + + + + F L P P +++HG+T E L Sbjct: 22 LVDVETSGLMARRDRVLSVAVITIGPDGEQTGEFSTLLNPG---CDPGPVEVHGLTVERL 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P+F + Q +AHNA+FD F+ E R L S+ + TL++ Sbjct: 79 QGAPTFDQVAGRIGAML--QGRVLVAHNAQFDYDFLAHEFARARMW-LPVSQRLCTLALN 135 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 R+ P + + L +L YG +S + H AL D+ +L+ + Sbjct: 136 RQVDPPTDDMKLGTLAAHYG--VSRQRAHDALDDTRVLAGI 174 >gi|239831040|ref|ZP_04679369.1| exonuclease [Ochrobactrum intermedium LMG 3301] gi|239823307|gb|EEQ94875.1| exonuclease [Ochrobactrum intermedium LMG 3301] Length = 214 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 7/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEAL 60 + K R IV D ETTGL DRI+ IGAV++ +++ + P RK+S P+A Sbjct: 9 VHTRKKRVIVVDTETTGL-LPYDRIVTIGAVKIEGDDFLHQSLHLIFDP--RKDSHPQAE 65 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HG + + + FS + + +F+ + E +AHNA FD+ ++ E ++ D L P Sbjct: 66 AVHGYDNWMTRYQDLFSDLAAPIRKWFDWAD-EIVAHNADFDMRYVQREFRKAEVDML-P 123 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + T+ +R L+ R G++ + +HGAL D++L + +Y+ Sbjct: 124 HPVFCTMERSREIWSGQSAKLDDCLARIGLSRIGK-RHGALEDAYLTAGLYL 174 >gi|288922213|ref|ZP_06416412.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f] gi|288346447|gb|EFC80777.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f] Length = 565 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 98/238 (41%), Gaps = 47/238 (19%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHG 64 +V D+ETTG I EIGAV++ R QV L P L G Sbjct: 30 VVVDLETTGGSPATSEITEIGAVKV-------RGGQVLGEMSSLVRASTPIPPVVSVLTG 82 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD L P+ + F +F + A +AHNA FD+GF+ A Q P+ + Sbjct: 83 ITDSMLATAPTLDEVVPTFLEF--SRGAVLVAHNAAFDLGFLRAAAQACGY-PVPAWEHL 139 Query: 125 DTLSIARR-----KHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKMMVG 177 DT+ IARR + P+ R L SL +G +HR+ A +L ++ ++ Sbjct: 140 DTVLIARRVVTRDEAPNCR--LASLATLFGSPTEPNHRALADARATVAVLHGLFERLG-- 195 Query: 178 GSQINFGFKTNED---------------RFFKEEKKTVPNISLLK--RDKPLFTRITK 218 N G T ED R ++ T P + + + D+PL+ ++ Sbjct: 196 ----NLGVTTLEDVREYSARVSPAQRRKRHLADDLPTGPGVYVFRDGADRPLYVGTSR 249 >gi|240947949|ref|ZP_04752376.1| ribonuclease T [Actinobacillus minor NM305] gi|240297743|gb|EER48202.1| ribonuclease T [Actinobacillus minor NM305] Length = 216 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 31/204 (15%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNG 52 KN+ R ++ D+ET GL+++ D ++EI A+ L+ K + Q F G Sbjct: 12 KNRFRGYLPVIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPF---EG 68 Query: 53 RKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104 + ++LK +GI D L+ + E + + Q A +AHNA FD G Sbjct: 69 ANINQDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQG 128 Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ A +RIN +DP P + DT ++A + + L C+ I + H AL Sbjct: 129 FLQAAAKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQIANIAFDGKQAHSALY 186 Query: 163 DSHLLSDVYIKMM-----VGGSQI 181 D+ ++++ M+ +GG I Sbjct: 187 DTEKTTELFCTMVNRLKDLGGYPI 210 >gi|78777649|ref|YP_393964.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM 1251] gi|78498189|gb|ABB44729.1| Exonuclease [Sulfurimonas denitrificans DSM 1251] Length = 205 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 15/173 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL+ K D I+ IGAV++ D T++TF+VFL N ++ S ++K+HGI Sbjct: 35 VVFDTETTGLNPKVDEILSIGAVKIKDNRVLTSQTFEVFL-QNSKEISSNSIKIHGIRPF 93 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRIID 125 LKD + EF +F + I + +FDV IN R K L P+++I+ Sbjct: 94 DLKDAKTTKEGIVEFLNFIGSR--PLIGYYLEFDVAMIN----RYTKPLLGINLPNKMIE 147 Query: 126 TLSIARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I K P DL +I + H A+ D+ + + +Y+K+ Sbjct: 148 VSEIYFDKTISLIPQGNIDLRFDTILKNCSIPNMGAHNAVNDAIMTAMIYLKL 200 >gi|320160945|ref|YP_004174169.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea thermophila UNI-1] gi|319994798|dbj|BAJ63569.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea thermophila UNI-1] Length = 934 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 15/174 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 + DIETTGLD + D IIEIGAV + + + + P KN P + +L GIT++ Sbjct: 8 VAIDIETTGLDPEKDCIIEIGAVRFSN-RRVEAEWSSLIKPT--KNIPSFITQLTGITND 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+ + + F N + HN +FD+ F+ + N + +IDT Sbjct: 65 MVRKAPTIQDVIGDLAHFVG--NCPIVGHNIRFDLSFLQKQHILWN------NHVIDTYE 116 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +A P+ SR +L L + GI + + H AL D+ + ++I ++ S++ Sbjct: 117 LASVLLPTASRYNLGVLAQSLGILLP--ATHRALDDARVTHALFIALLEKASEL 168 >gi|149183101|ref|ZP_01861552.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. SG-1] gi|148849178|gb|EDL63377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. SG-1] Length = 933 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 11/163 (6%) Query: 10 IVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG K D+II++ A+ ++ ++ F+ P G +L GI D Sbjct: 7 VVVDLETTGNSPKKGDKIIQLAAM-VVQGGAVVDSYTTFVNP-GITIPSFIEELTGIHDG 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127 +KD P FS I + + + A + AHN +FD+GF+ AEL+ +P PS DT+ Sbjct: 65 MVKDAPEFSEIAPKVLELLD--GAVFCAHNVQFDLGFLQAELEEAGYNPFSGPS--FDTV 120 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167 +A+ P++ + L L R+ + S H++ AL+ + LL Sbjct: 121 ELAKITLPTADSYKLTELSDRFSLNHSRPHQADSDALVTAELL 163 >gi|240168250|ref|ZP_04746909.1| hypothetical protein MkanA1_02987 [Mycobacterium kansasii ATCC 12478] Length = 680 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 99/197 (50%), Gaps = 25/197 (12%) Query: 21 SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80 + D I EIGAV++ + F + P R P+ ++L GIT ++D P S++ Sbjct: 75 APPDAITEIGAVKVRGGTVLAE-FATLVDPQ-RSIPPQIVQLTGITTAMVRDAPVISAVL 132 Query: 81 SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR-----KHP 135 F++F N+ ++AHNA FD+GF+ A ++ + P +++ T+ +ARR + P Sbjct: 133 PMFFEFAG--NSVFVAHNAGFDIGFLRAAARQCDITWPRP-KVLCTVRLARRVLSREEAP 189 Query: 136 SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFGFKTNEDRFF 193 S R L L + + +++ + H AL D+ DV ++ VG N G T F Sbjct: 190 SVR--LAELARLF--SVATQPTHRALDDARATVDVLHALIERVG----NQGVHT-----F 236 Query: 194 KEEKKTVPNISLLKRDK 210 + + +PN++ +R K Sbjct: 237 ADLRSYLPNVTPAQRRK 253 >gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] Length = 611 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 9/161 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+GL + R++++ ++ R++ L P P + +HG+T E L Sbjct: 24 VVDVETSGLSPTHHRVLQVAVTQVEPDGALGRSWSSLLDPG---VDPGPVHVHGLTRERL 80 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P + + + ++ +AHNA+FD GF+ AE R + PL R + TL+++ Sbjct: 81 AGAPQYQDVAGTLDELVRDRV--LVAHNARFDWGFLAAESDR-ARAPLSVDRRLCTLALS 137 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 RR P S L ++ +G + R H A D +L +V Sbjct: 138 RRLDLPVSDLRLATVAAHWG--VQQRRAHDAEDDVRVLVEV 176 >gi|152979979|ref|YP_001352248.1| hypothetical protein mma_0558 [Janthinobacterium sp. Marseille] gi|151280056|gb|ABR88466.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 195 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 18/172 (10%) Query: 9 KIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGIT 66 K++F D+ETTG + NDRI EIG V + +R + F+ P + PE ++ L GI+ Sbjct: 6 KLIFVDLETTGANLVNDRITEIGIVAVDPDGCIDR-WSTFVNPG--RPIPEFIQGLTGIS 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLDPSR 122 DE ++ P F ++ + Q+ +IAHNA+FD GF++ R +N + L + Sbjct: 63 DEMVESAPMFETLADTVRERL--QDGLFIAHNARFDYGFLHHAFVRSGHVLNAEMLCTVK 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + L A +KH +L+SL R+ + ++H AL D+ LL ++ K+ Sbjct: 121 LSRALFPAEKKH-----NLDSLIARHDLI--PEARHRALADADLLWQLWRKL 165 >gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens NCTC 8239] gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens NCTC 8239] Length = 870 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+E+TG+D D II+I A++L + F+ FL +K ++ +HG +DE Sbjct: 505 IVFDVESTGVDVIEDEIIQIAAIKLNKKGEVVDKFEKFL--KNKKPVKDSYYVHGFSDEM 562 Query: 70 L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L K + EF ++ + + + HN ++D+ + +EL+R N DTL Sbjct: 563 LQKIGEDKEKVLKEFVEY--SKGSIIVGHNVQYDINILCSELERSNLGKPKFKTFYDTLD 620 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 I RR +P + N L +L Y H+ H A+ D Sbjct: 621 IYRRFYPGNINYKLENLSNVYD--TKHKPSHDAMDD 654 >gi|15643342|ref|NP_228386.1| DNA polymerase III PolC [Thermotoga maritima MSB8] gi|6225287|sp|Q9ZHF6|DPO3_THEMA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|4981093|gb|AAD35661.1|AE001732_6 DNA polymerase III, alpha subunit [Thermotoga maritima MSB8] gi|3930535|gb|AAC80438.1| DNA polymerase III [Thermotoga maritima] Length = 1367 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGLD + D IIEIGAV+ + + + + P+ R+ S ++ ++ GIT E Sbjct: 359 VVLDFETTGLDPQVDEIIEIGAVK-IQGGQIVDEYHTLIKPS-REISRKSSEITGITQEM 416 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128 L++K S + EF F +++ +AHNA FD F+ ++++ LD R IDTL+ Sbjct: 417 LENKRSIEEVLPEFLGFL--EDSIIVAHNANFDYRFLRLWIKKVMG--LDWERPYIDTLA 472 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ L+S+ ++ G + H AL D+ + + V+++ + Sbjct: 473 LAKSLLKLRSYSLDSVVEKLG--LGPFRHHRALDDARVTAQVFLRFV 517 >gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jostii RHA1] gi|110818358|gb|ABG93642.1| probable DNA polymerase III [Rhodococcus jostii RHA1] Length = 649 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+ET+GL S R++ + A+ L + R L P P + +H +T Sbjct: 70 RWVVVDVETSGLRSSTHRVLSVAALALREDGSVERELVTLLNPG---CDPGPVHIHNLTP 126 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P F + ++ + + + +AHNA FD GF++AE++R R+ TL Sbjct: 127 QRLAGAPRFEEVANDLLELLDGRT--LVAHNASFDYGFLDAEVRRAGMTMPTRQRLC-TL 183 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +++RR N L++L + + H A D+ +L++V+ Sbjct: 184 ALSRRLEIDVPNHKLSTLAAHW--KVRQNRAHDAYDDALVLTEVF 226 >gi|330469366|ref|YP_004407109.1| hypothetical protein VAB18032_27181 [Verrucosispora maris AB-18-032] gi|328812337|gb|AEB46509.1| hypothetical protein VAB18032_27181 [Verrucosispora maris AB-18-032] Length = 584 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 16/180 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG I EIGAV++ + + P G P L GIT+ Sbjct: 33 VVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITEAM 90 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L PS + F +F + +A +AHNA +DVGF+ A R +P R++DT ++ Sbjct: 91 LLPAPSIEQVLPSFLEFVS--DAVLVAHNAPYDVGFLKAACARHGYRWPNP-RVLDTAAL 147 Query: 130 ARR---KHPSSRNDLNSLCK--RYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQIN 182 ARR + L +L R T +HR AL D+ DV ++ +GG +++ Sbjct: 148 ARRVLLRDEVPNRKLGTLAAYFRAATTPTHR----ALDDARATVDVLHGLIGRLGGHRVD 203 >gi|268611881|ref|ZP_06145608.1| hypothetical protein RflaF_20541 [Ruminococcus flavefaciens FD-1] Length = 176 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 9/173 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ET + NDR+ IG + D +K + + P +S +L GI E Sbjct: 5 IVFDVETP--NHANDRMSAIGITAVKD-NKIVANYFSLVDPETHFDSFNT-QLTGIDAEK 60 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P+F+ ++ + ++ +AHNA FD+ + + L+ + + T+ I Sbjct: 61 VKDAPNFAELWKKIEPIMSK--GILVAHNAVFDMSVLRSCLRSYGITWKPTAEYLCTVQI 118 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 RR P+ +++LN +C YGI + H H A D+H +++ ++ M G ++ Sbjct: 119 GRRVLPNMKHNLNVMCDHYGIALDH---HQADSDAHACAEILLRYMESGVDVS 168 >gi|149911269|ref|ZP_01899891.1| exonuclease [Moritella sp. PE36] gi|149805654|gb|EDM65654.1| exonuclease [Moritella sp. PE36] Length = 138 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 57/107 (53%), Gaps = 5/107 (4%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D ETTGL DR IEIGAV++ D T R FQ + P GR+ S IT++ Sbjct: 9 IILDFETTGLSPDMGDRAIEIGAVKIEDGEITGR-FQELMYP-GRRVSSFIADYTSITND 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 L D + F DF Q +AHNA FD F++AEL RI++ Sbjct: 67 MLVDAAPCEEVMHRFADFI--QGYNLVAHNASFDKRFLDAELTRIDR 111 >gi|145580424|pdb|2P1J|A Chain A, Crystal Structure Of A Polc-Type Dna Polymerase Iii Exonuclease Domain From Thermotoga Maritima gi|145580425|pdb|2P1J|B Chain B, Crystal Structure Of A Polc-Type Dna Polymerase Iii Exonuclease Domain From Thermotoga Maritima Length = 186 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGLD + D IIEIGAV++ + + + P+ R+ S ++ ++ GIT E Sbjct: 15 VVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDE-YHTLIKPS-REISRKSSEITGITQEM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128 L++K S + EF F +++ +AHNA FD F+ ++++ LD R IDTL+ Sbjct: 73 LENKRSIEEVLPEFLGFL--EDSIIVAHNANFDYRFLRLWIKKVMG--LDWERPYIDTLA 128 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ L+S+ ++ G + H AL D+ + + V+++ + Sbjct: 129 LAKSLLKLRSYSLDSVVEKLG--LGPFRHHRALDDARVTAQVFLRFV 173 >gi|332359593|gb|EGJ37411.1| DNA polymerase III [Streptococcus sanguinis SK49] Length = 814 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + E +K Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56 Query: 62 -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 57 ELTGLNDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165 >gi|118619457|ref|YP_907789.1| DNA polymerase III subunit epsilon [Mycobacterium ulcerans Agy99] gi|118571567|gb|ABL06318.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium ulcerans Agy99] Length = 329 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G + R+I + A+ L + L P G P +HG+T L Sbjct: 18 VVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGG---DPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 +D+P F+ I + + + +AHN FD F+ AE + + + P+D ++ T+ + Sbjct: 75 EDQPQFADIVGDLTELLRGRT--LVAHNVAFDYSFLAAEAELTDAELPVD--SVMCTVEL 130 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L +G+T H A D+ +LS + + Sbjct: 131 ARRLELGIDNLRLETLAAHWGVT--QERPHDAFDDALVLSGILAPAL 175 >gi|281492444|ref|YP_003354424.1| ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Lactococcus lactis subsp. lactis KF147] gi|281376108|gb|ADA65599.1| ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit [Lactococcus lactis subsp. lactis KF147] Length = 794 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 93/177 (52%), Gaps = 18/177 (10%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 KN R V D+E T S ++II+IG V L++ + TF + P+ P +L Sbjct: 2 KNMTRYAVVDLEATDAHSSENKIIQIGIV-LVEDGEIVETFSTEVNPH-EPLLPRISELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-----FINAELQRINKDPL 118 G++D+ LK P FS + + + ++ ++AHNA+FD G F+NA L+ Sbjct: 60 GLSDKQLKTAPEFSEVAGKVRELLT--DSVFVAHNARFDYGLLEKSFLNAGLE------F 111 Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +DT+ +AR +P+ + L SL ++ + ++H H A+ D++ +++ +K+ Sbjct: 112 NEMLRVDTVDLARVFYPTFEKYGLESLSEK--LDLAHDHPHAAVSDAYATAELLLKI 166 >gi|227495992|ref|ZP_03926303.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM 15434] gi|226834480|gb|EEH66863.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM 15434] Length = 547 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + I EIGAV + + + P GR + L GIT+ Sbjct: 32 VVVDLETTGAGPGSHTITEIGAVRVRG-GQVEDELSTLVNP-GRAIPAQITVLTGITNAM 89 Query: 70 LKDKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P F W E+ +AHNA+FDVG + + + D +P R++DTL Sbjct: 90 VAGAPPVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHEP-RVLDTL 148 Query: 128 SIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ARR S + L +L G R H AL D+ DV Sbjct: 149 ALARRAWTRSEVPNHRLATLASFVGSPT--RPTHRALDDARATVDV 192 >gi|303246654|ref|ZP_07332932.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans JJ] gi|302491994|gb|EFL51872.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans JJ] Length = 240 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 20/179 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D E TG D + ++ IGAV L + +F + P+ R +A +HG+TD Sbjct: 44 VVVDTELTGFDPRRHAMVAIGAVRLRGLTLLPGESFFSLVRPS-RDVPRDASLIHGLTDA 102 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + + F DF A + H+ + D+ FINA +R L + IDTL Sbjct: 103 ALADAPETAETLAAFLDFLGP--AIIVGHHVELDMAFINAASRRYFGGELA-APCIDTLR 159 Query: 129 IA------RRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A R+ + DL SLC+RYG+ + H AL D++ + +++ + Sbjct: 160 LALTYEEKRQMGQGGQGDFERLEFDLASLCRRYGLPPF--AAHDALGDAYGAAYLFLYL 216 >gi|269956792|ref|YP_003326581.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM 15894] gi|269305473|gb|ACZ31023.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica DSM 15894] Length = 584 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 14/171 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + + I EIGAV++ FQ + P GR+ +L GIT Sbjct: 34 VVVDLETTGTRTTDSGITEIGAVKVRGGEVLGE-FQSLVNP-GREVPAFVARLTGITTAM 91 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + PS + F ++ + + +AHNA FDVGF+ A + P ++DT+ + Sbjct: 92 VSTAPSIDLVLPSFLEWAH--DCVLVAHNAPFDVGFLKAAAAGLGY-PWPGFPVVDTVPL 148 Query: 130 ARRKHP---SSRNDLNSLCK--RYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR P + + L +L R +T HR AL D+ DV ++ Sbjct: 149 ARRVVPKDEAPNHKLATLAHLFRARVTPEHR----ALADARATVDVLHGLL 195 >gi|125717716|ref|YP_001034849.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK36] gi|125497633|gb|ABN44299.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit, putative [Streptococcus sanguinis SK36] Length = 814 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ ++ E +K Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH--EDLDEHIK 56 Query: 62 -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 57 ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165 >gi|331091091|ref|ZP_08339933.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405313|gb|EGG84849.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium 2_1_46FAA] Length = 236 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 77/165 (46%), Gaps = 11/165 (6%) Query: 7 MRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 MRK I FD+ETTGL + D IIEIGAV++ + +R F FL P S L G Sbjct: 1 MRKTYISFDLETTGLSEEKDYIIEIGAVKVNNGKVVDR-FARFLKP-PISISNTITNLTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD+ +K+ +F F + + HN FD F+ R I Sbjct: 59 ITDDMVKNAGDTQETIKDFIKFCD--GYFLLGHNIMFDYKFMKTYAARFGLHF--EKEGI 114 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166 DTL IAR+ H + L SLC Y I +HR+ H AL + L Sbjct: 115 DTLKIARKVHKNLESKSLESLCTYYNIVNASAHRAYHDALATAKL 159 >gi|227544617|ref|ZP_03974666.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri CF48-3A] gi|300910253|ref|ZP_07127713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri SD2112] gi|227185400|gb|EEI65471.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri CF48-3A] gi|300892901|gb|EFK86261.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri SD2112] Length = 954 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 19/167 (11%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTG + + DRII+IG V + D N F+ + P R+ P ++ +L GI D+ Sbjct: 21 VVDLETTGTNVNHGDRIIQIGCVLVQDGEIMNH-FETKINP--REKIPRSIVQLTGIEDK 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127 ++ P F I + E ++AHN FD F+NAEL+R L P+ IDT+ Sbjct: 78 DVRKAPLFEDIAGTIYSLLAE--TTFVAHNVNFDFPFLNAELERAGYPSLSIPA--IDTV 133 Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++++ P++++ DL S + I H H A+ D+ +D+ Sbjct: 134 TLSQILLPTAKSFRLRDLTS-----SLHIEHDHPHSAVSDAEATADL 175 >gi|324990933|gb|EGC22868.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK353] Length = 814 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S +II+IG V L++ +T++ + P+ ++ E +K Sbjct: 1 MTQNDYKYAVVDLEATGTGS-GAKIIQIGIV-LIENGIITKTYETDVNPH--EDLDEHIK 56 Query: 62 -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 57 ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165 >gi|169334141|ref|ZP_02861334.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM 17244] gi|169258858|gb|EDS72824.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM 17244] Length = 204 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 6/157 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTGL+ + IIE+GAV++ D K F F+ P SPE KL GI + + Sbjct: 26 VIDIETTGLNPDENEIIEVGAVKVRD-RKIVDEFSSFVSPKKDIISPEIRKLTGIDEAMI 84 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + + F +F + + + HN FD+ F+ +R + D + +D L I+ Sbjct: 85 EGADQIEDVIPRFNEFIDGEI--LLGHNVNFDINFLYDNYERYS-DFYLSNDYVDLLKIS 141 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGA-LLDSH 165 R+ P N L ++ K+ GI + + + + +D+H Sbjct: 142 RKLSPEFENHKLETVLKKLGIKVDQQHRAVSDCIDAH 178 >gi|125549801|gb|EAY95623.1| hypothetical protein OsI_17478 [Oryza sativa Indica Group] Length = 260 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 22/180 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI---T 66 +VFD+ETTG K+ RI+E +L N TF+ + P + P+ ++ H I T Sbjct: 63 LVFDLETTGYFHKDHRIVEFALCDL--SGGKNSTFETLVNPE--RTVPDYVQ-HLIKIGT 117 Query: 67 DEFLKDK-PSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLD 119 D + P FS + F + A W+AHNAK FD F+ E R + PL Sbjct: 118 DLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSA-PLP 176 Query: 120 PSRI-IDTLSIARRKHPSS----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + DTL +A++ + R L +L + YGI +SH H A+ D +LS V+ KM Sbjct: 177 ADWLFFDTLLLAKKMVKAEGKKRRTSLEALREHYGI-VSHDDAHRAMRDVMILSQVFQKM 235 >gi|242041211|ref|XP_002468000.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor] gi|241921854|gb|EER94998.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor] Length = 583 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 19/178 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG + DRIIE +L+ N TFQ + P + +HGI++ Sbjct: 384 LVFDIETTGFSRREDRIIEFAVRDLM--GGKNSTFQTLINPEKEVRNA---YVHGISNSM 438 Query: 70 L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121 L D P F + + + + W+AHN + FDV F+ E +R + Sbjct: 439 LCRPDVPRFGELVPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLIFEFRRCKLEMPGDW 498 Query: 122 RIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DTL IAR+ S + L+S L +RY I ++ S H A+ D L V K+ Sbjct: 499 LFVDTLPIARQLVDSDGSKLSSVSLKNLRERYNIPLTG-SAHRAMQDVTTLCYVLQKL 555 >gi|118443832|ref|YP_878213.1| DNA polymerase III PolC [Clostridium novyi NT] gi|118134288|gb|ABK61332.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium novyi NT] Length = 1444 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 88/164 (53%), Gaps = 9/164 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG S+ D+IIE GAV++ + + + +F F+ P K + +L IT++ Sbjct: 432 VVFDLETTGFSSQYDKIIEFGAVKIKNGNIID-SFSAFVNPE-IKIPYKITELTSITNDD 489 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD + + +F F + +AHN+ FD+ FI + +N + ++DT+ + Sbjct: 490 VKDAETIDKVLPKFIKF--AEGTVLVAHNSNFDMSFIRKNCKDLNIEC--NYTVMDTIPL 545 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 A+ P R LN++ K G+++ + H A+ D+ D+ + Sbjct: 546 AKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATGDILV 587 >gi|149190247|ref|ZP_01868521.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] gi|148835854|gb|EDL52817.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] Length = 144 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 78/145 (53%), Gaps = 9/145 (6%) Query: 99 AKFDVGFINAELQRINKD---PLDPSRIIDTLSIARR-KHPSSRNDLNSLCKRYGITISH 154 A FDVGF++ E ++++ ++ DTL++A+R + +R +L+SL K Y I S Sbjct: 1 APFDVGFMDYEFEKLDASIGKTEQYCKVTDTLAMAKRMANMPARKNLDSLAKHYTIDTSA 60 Query: 155 RSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214 R HGALLD+ +L+DVY+ M G Q + F + + +T+ ++ ++ + Sbjct: 61 RVLHGALLDAEILADVYLAMT--GGQTSMQFNAGQSDGDESGGETIKRLTTGRKSLKIL- 117 Query: 215 RITKEELDEHDKTIQTL--GKNAIW 237 + +E++ H+ + + G + +W Sbjct: 118 HASADEIEAHNSRLDIVEKGGSCLW 142 >gi|319939450|ref|ZP_08013810.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV] gi|319811436|gb|EFW07731.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV] Length = 819 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 94/174 (54%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + K + V D+E T S N +II++G V L++ + +T++ + P+ + +S + Sbjct: 1 MTQEKRKYAVVDLEATS-ASSNAKIIQVGIV-LIENGQIVKTYETDVNPHEKLDS-HICQ 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L+ P FS + E ++ ++A ++AHN KFD + L + + P Sbjct: 58 LTGLTDKRLRRAPDFSQVAREIYELI--EDAIFVAHNVKFDANLLAEALFWEGFELVTPR 115 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ P+ + +L LC++ I + H H AL D+ + +++K+ Sbjct: 116 --VDTVELAQVFFPTFEKYNLGILCEQLDIPLKH--AHTALADASATATLFLKI 165 >gi|86140827|ref|ZP_01059386.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis MED217] gi|85832769|gb|EAQ51218.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis MED217] Length = 221 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 24/181 (13%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCPNGRKNSPEALKL 62 R +VFD ETTG +++ DR++ IGA+EL K N+ +F++++ + EA+ + Sbjct: 35 RFVVFDTETTGTNAREDRMLSIGALEL----KGNKISLSSSFELYV--KQEVFNEEAVAI 88 Query: 63 HGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HGI E K K S F +F +A + H+ FD+G IN L+R+ L + Sbjct: 89 HGILRENRKYKKVSEEEAVKAFLEFIG--DAILVGHHVGFDIGIINYALKRLGAPKLK-N 145 Query: 122 RIIDTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + DT + +R P+ L+ LC+ + I+ +H A+ D+++ + ++K+ Sbjct: 146 KFTDTGVLYKRTVHLVNITDPNKVYTLDDLCEE--LNIAKTDRHKAMGDAYITALAFLKV 203 Query: 175 M 175 M Sbjct: 204 M 204 >gi|325689970|gb|EGD31974.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK115] Length = 814 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + E +K Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56 Query: 62 -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 57 ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165 >gi|54309733|ref|YP_130753.1| ribonuclease T [Photobacterium profundum SS9] gi|54036326|sp|Q6LP25|RNT_PHOPR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|46914171|emb|CAG20951.1| putative ribonuclease T [Photobacterium profundum SS9] Length = 223 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L +D + K T + P G EAL+ +G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGAVLHKEALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFI--NAELQRI 113 I D F L+ S + E + ++ A +AHNA FD F+ +E R+ Sbjct: 80 IRDPFSPLRGAVSEETALKEIYKQIRKEQKTADCSRAIMVAHNANFDHSFVMEASERARL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L CK GI ++ H AL D+ ++++ + Sbjct: 140 KRNPFHPFATFDTAALSGLAF--GQTVLAKACKTAGIAFDNKEAHSALYDTERTAELFCE 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|300856235|ref|YP_003781219.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528] gi|300436350|gb|ADK16117.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528] Length = 1449 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 15/152 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDEF 69 V D+ETTG ++I EIG +++ D K TF F+ P K P +++ ITD+ Sbjct: 428 VLDLETTGFSPVTEKITEIGIMKIKD-GKVIDTFSTFVNP--EKPIPLRVVEVTNITDDM 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127 +++ + +F + DF +++ +AHNA+FDVGF+ NA++ + D +DTL Sbjct: 485 VRNAETIEQVFPKMLDFI--KDSVLVAHNAEFDVGFLKHNAKILGCDFD----FTYVDTL 538 Query: 128 SIARRKHPSSRN-DLNSLCKRYGI--TISHRS 156 S+A+ P + L + K GI ++HR+ Sbjct: 539 SLAQEVFPDFKTYKLGRIAKNLGIKVEVAHRA 570 >gi|328945970|gb|EGG40117.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK1087] Length = 814 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + E +K Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56 Query: 62 -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 57 ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165 >gi|327459895|gb|EGF06235.1| DNA polymerase III [Streptococcus sanguinis SK1057] Length = 814 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + E +K Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56 Query: 62 -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 57 ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165 >gi|229545209|ref|ZP_04433934.1| conserved hypothetical protein [Enterococcus faecalis TX1322] gi|229309754|gb|EEN75741.1| conserved hypothetical protein [Enterococcus faecalis TX1322] Length = 175 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|254282911|ref|ZP_04957879.1| ribonuclease T [gamma proteobacterium NOR51-B] gi|219679114|gb|EED35463.1| ribonuclease T [gamma proteobacterium NOR51-B] Length = 214 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 22/191 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----GRKNSPEALKLHG 64 +V D+ET G ++ D ++EI A + T + LC N G P AL+ G Sbjct: 19 VVIDVETGGFNADTDAVLEIAATLVGMNDDGILTPKQTLCHNVEPFEGANLEPSALEFTG 78 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I E + + +F IFS EQ A + HNA FD GFINA R I Sbjct: 79 IDPESPLRDAVPEAIAFGEIFSAIRKEIREQGCNRAILVGHNAHFDAGFINAASMRADIK 138 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ GI + H A D+ ++++ + Sbjct: 139 RNPFHPFSHFDTATLAGLAY--GQTVLAKACRTAGIDFDNNEAHSAAYDAAKTAELFCNI 196 Query: 175 M-----VGGSQ 180 + +GG Q Sbjct: 197 VNRWQALGGWQ 207 >gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] Length = 1358 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 15/169 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTGL DRI EIGA +++D K + + P PE + ++ GIT++ Sbjct: 343 VVFDLETTGLSRYRDRITEIGACKVID-GKICEIYNELVNP--EMLIPEKITEITGITNQ 399 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRIIDT 126 ++ P + F +F Q + + N FDVGF+ R+ D PL +DT Sbjct: 400 MVESCPKIEEVLPGFLEFC--QGSILVGQNTDFDVGFVRENCTRLGLDFNPL----YLDT 453 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L +AR + L+ + ++ + I + H A D+ + ++IKM Sbjct: 454 LPMARALFADMKKFSLDKIARK--LEIPAFNHHRASDDARATAQIFIKM 500 >gi|148544145|ref|YP_001271515.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri DSM 20016] gi|184153518|ref|YP_001841859.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112] gi|227364574|ref|ZP_03848635.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri MM2-3] gi|325682311|ref|ZP_08161828.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A] gi|148531179|gb|ABQ83178.1| DnaQ family exonuclease/DinG family helicase, putative [Lactobacillus reuteri DSM 20016] gi|183224862|dbj|BAG25379.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112] gi|227070411|gb|EEI08773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri MM2-3] gi|324978150|gb|EGC15100.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A] Length = 954 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 19/167 (11%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTG + + DRII+IG V + D N F+ + P R+ P ++ +L GI D+ Sbjct: 21 VVDLETTGTNVNHGDRIIQIGCVLVQDGEIINH-FETKINP--REKIPRSIVQLTGIEDK 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127 ++ P F I + E ++AHN FD F+NAEL+R L P+ IDT+ Sbjct: 78 DVRKAPLFEDIAGTIYSLLAE--TTFVAHNVNFDFPFLNAELERAGYPSLSIPA--IDTV 133 Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++++ P++++ DL S + I H H A+ D+ +D+ Sbjct: 134 TLSQILLPTAKSFRLRDLTS-----SLHIEHDHPHSAVSDAEATADL 175 >gi|327469619|gb|EGF15088.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK330] Length = 814 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + E +K Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56 Query: 62 -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 57 ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165 >gi|327473768|gb|EGF19186.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK408] Length = 814 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + E +K Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56 Query: 62 -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 57 ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165 >gi|160944143|ref|ZP_02091373.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii M21/2] gi|158444819|gb|EDP21823.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii M21/2] Length = 1417 Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 16/194 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD ETTGLD + + EIGAV ++ + F F+ P G+ +P+ +L GIT+E + Sbjct: 399 VFDTETTGLDPGVEYLTEIGAV-IIRNGEVVEEFDTFVKP-GKPITPKITELTGITNEMV 456 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129 D PS F F ++ + HN FD+ F+ A +R + L+P+ IDTL++ Sbjct: 457 ADAPSEKEALEAFLAFAGDRIL--VGHNVHAFDMRFLRAAAKR-SGIKLEPT-YIDTLTM 512 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH--------LLSDVYIKMMVGGSQI 181 A+ +P N ++ + + H A DS +L+D+ K + S+I Sbjct: 513 AQTMYPGLHNYKQGTINKH-LELPAYEAHRACEDSAALGRIFCVMLNDLAEKEVTKVSEI 571 Query: 182 NFGFKTNEDRFFKE 195 N G N + K+ Sbjct: 572 NTGLGGNREVLKKK 585 >gi|38344168|emb|CAE03499.2| OSJNBa0053K19.7 [Oryza sativa Japonica Group] gi|116309750|emb|CAH66793.1| H0215F08.4 [Oryza sativa Indica Group] gi|125591688|gb|EAZ32038.1| hypothetical protein OsJ_16216 [Oryza sativa Japonica Group] gi|215712387|dbj|BAG94514.1| unnamed protein product [Oryza sativa Japonica Group] Length = 260 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 22/180 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI---T 66 +VFD+ETTG K+ RI+E +L N TF+ + P + P+ ++ H I T Sbjct: 63 LVFDLETTGYFHKDHRIVEFALCDL--SGGKNSTFETLVNPE--RTVPDYVE-HLIKIGT 117 Query: 67 DEFLKDK-PSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLD 119 D + P FS + F + A W+AHNAK FD F+ E R + PL Sbjct: 118 DLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSA-PLP 176 Query: 120 PSRI-IDTLSIARRKHPSS----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + DTL +A++ + R L +L + YGI +SH H A+ D +LS V+ KM Sbjct: 177 ADWLFFDTLLLAKKMVKAEGKKRRTSLEALREHYGI-VSHDDAHRAMRDVMILSQVFQKM 235 >gi|111018139|ref|YP_701111.1| hypothetical protein RHA1_ro01126 [Rhodococcus jostii RHA1] gi|110817669|gb|ABG92953.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1] Length = 588 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 18/174 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG D I EIGAV++ L GR P +++ GIT Sbjct: 25 VVVDLETTGARPGEDAITEIGAVKIRGGEVIAE--MATLVDPGRSIPPHIVEITGITTAM 82 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P + F +F + A +AHNA FD GF+ A + P ++ T+ + Sbjct: 83 VIDAPRIERVLPAFLEF--ARGAVLVAHNAPFDTGFLKAAASATDT-PWPKFTVLCTVKL 139 Query: 130 ARR-----KHPSSRNDLNSLCKRY--GITISHRSKHGALLDSHLLSDVYIKMMV 176 ARR + PS + L+SL + + G T +HR AL D+ DV ++ Sbjct: 140 ARRVLSRDEAPSVK--LSSLARLFDVGTTPTHR----ALDDARATVDVLHALIA 187 >gi|325479569|gb|EGC82665.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus prevotii ACS-065-V-Col13] Length = 1369 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 27/205 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL DRI EIGAV+ ++ K + + P S + + GIT+E Sbjct: 354 VVFDLETTGLSKYKDRITEIGAVK-VENGKITEEYNQLVNPE-MVISEKITDITGITNEM 411 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127 ++D P + +F F + + + N FDVGFI N I +PL +DTL Sbjct: 412 VEDCPKIDEVMKDFLKFCGD--SILVGQNTDFDVGFIKENCFRMEIEFNPL----YLDTL 465 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR + L+ + ++ + I + H A D+ + ++IKM Sbjct: 466 PMARALFSDMKKFSLDKIARK--LEIPAFNHHRASDDARATAQIFIKMF----------- 512 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 DR K ++ NI+ LK +P Sbjct: 513 ---DRIMKMNGISLSNINKLKSYRP 534 >gi|255523926|ref|ZP_05390889.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7] gi|296185167|ref|ZP_06853577.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium carboxidivorans P7] gi|255512357|gb|EET88634.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7] gi|296050001|gb|EFG89425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium carboxidivorans P7] Length = 1449 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 9/149 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG ++I EIG +++ D K F F+ P + P +++ ITD+ + Sbjct: 428 VLDLETTGFSPVIEKITEIGIMKIKD-GKVIDKFSCFVNPK-KPIPPRVVEVTNITDDMV 485 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D + +F + DF +++ +AHNA+FD+GF+ + + D D + +DTL++A Sbjct: 486 RDAETIEQVFPKMLDFI--KDSVLVAHNAEFDIGFLKHNARVLGYD-FDFTY-LDTLTLA 541 Query: 131 RRKHPSSRN-DLNSLCKRYGI--TISHRS 156 + P + L + K GI ++HR+ Sbjct: 542 QELFPDFKTYKLGRIAKNLGIKVEVAHRA 570 >gi|254458194|ref|ZP_05071620.1| exonuclease [Campylobacterales bacterium GD 1] gi|207085030|gb|EDZ62316.1| exonuclease [Campylobacterales bacterium GD 1] Length = 272 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 71/134 (52%), Gaps = 6/134 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIET G +IIEIGAV++ D ++ + C K+ E + GI+ E Sbjct: 71 IVDIETNGSKIDKHQIIEIGAVKVRDGVIIDKFESLVYCREINKHITE---ITGISVEDT 127 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K+ P+ + EF F NA ++AH+ KFD FI+ +Q+I +PL +R I +L++A Sbjct: 128 KNAPNLKKVLYEFKSFLG--NAIFVAHDVKFDYKFISLSMQKIGLEPL-LNRSICSLALA 184 Query: 131 RRKHPSSRNDLNSL 144 R S R L+ L Sbjct: 185 ERTIESYRYALSYL 198 >gi|115460648|ref|NP_001053924.1| Os04g0623400 [Oryza sativa Japonica Group] gi|113565495|dbj|BAF15838.1| Os04g0623400 [Oryza sativa Japonica Group] Length = 282 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 22/180 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI---T 66 +VFD+ETTG K+ RI+E +L N TF+ + N + P+ ++ H I T Sbjct: 63 LVFDLETTGYFHKDHRIVEFALCDL--SGGKNSTFETLV--NPERTVPDYVE-HLIKIGT 117 Query: 67 DEFLKDK-PSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLD 119 D + P FS + F + A W+AHNAK FD F+ E R + PL Sbjct: 118 DLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSA-PLP 176 Query: 120 PSRI-IDTLSIARRKHPSS----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + DTL +A++ + R L +L + YGI +SH H A+ D +LS V+ KM Sbjct: 177 ADWLFFDTLLLAKKMVKAEGKKRRTSLEALREHYGI-VSHDDAHRAMRDVMILSQVFQKM 235 >gi|307244994|ref|ZP_07527091.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854159|gb|EFM86367.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 218 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 26/193 (13%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNG 52 KN+ R ++ D+ET GL+++ D ++E+ A+ L+ K + Q F G Sbjct: 12 KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPF---EG 68 Query: 53 RKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104 +P++LK +GI D L+ + E + Q A +AHNA FD Sbjct: 69 ANINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQA 128 Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ A ++RIN +DP P + DT ++A + L C+ I + H AL Sbjct: 129 FVQAAVKRINAKRDPFHPFAMFDTATLAGFMF--GQTVLVKACQMAKIPFDGKQAHSALY 186 Query: 163 DSHLLSDVYIKMM 175 D+ ++++ M+ Sbjct: 187 DTEKTTELFCAMV 199 >gi|162449983|ref|YP_001612350.1| exonuclease [Sorangium cellulosum 'So ce 56'] gi|161160565|emb|CAN91870.1| exonuclease [Sorangium cellulosum 'So ce 56'] Length = 298 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 16/170 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+E TGL ++DR+IE+ A D + T V P N+ +HGI Sbjct: 34 VFLDLEMTGLRPESDRVIEVCAERTRGDACEDAITSLVRPEPGVFGNA----HVHGIDPR 89 Query: 69 FLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L P+ F+E D ++ + A +AH A +DV F+ AEL R + P +DT Sbjct: 90 ELAGAPT----FAELCDRIDQVTEGAVLVAHAAAWDVAFLEAELARAGRARRLPH-YLDT 144 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKMM 175 L ++RR + L SLC+ G+ HR + H A D H L V+ K++ Sbjct: 145 LVLSRRAFALPSHSLASLCRELGV---HRERAHRAEDDVHALRAVFRKIV 191 >gi|325687825|gb|EGD29845.1| DNA polymerase III [Streptococcus sanguinis SK72] Length = 814 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + E +K Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56 Query: 62 -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 57 ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCGL--LDISLENAHTALADAQATAQLFLKI 165 >gi|258546253|ref|ZP_05706487.1| DNA polymerase III, epsilon subunit [Cardiobacterium hominis ATCC 15826] gi|258518519|gb|EEV87378.1| DNA polymerase III, epsilon subunit [Cardiobacterium hominis ATCC 15826] Length = 141 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 3/87 (3%) Query: 101 FDVGFINAE--LQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSK 157 FD F N E L + D R++DTL +AR+K SR L+SLCK YGI S+R+ Sbjct: 3 FDQSFFNREFKLAGLKYKLEDRFRLLDTLDLARKKISGISRFSLDSLCKYYGIDNSNRTL 62 Query: 158 HGALLDSHLLSDVYIKMMVGGSQINFG 184 HGALLDS LL++VY+K+ S +F Sbjct: 63 HGALLDSQLLAEVYLKLTTEQSGFDFA 89 >gi|209809036|ref|YP_002264574.1| exonuclease [Aliivibrio salmonicida LFI1238] gi|208010598|emb|CAQ80976.1| exonuclease [Aliivibrio salmonicida LFI1238] Length = 227 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL ++ DR IEIGAV+L + +R FQ + P R +S A GIT+ Sbjct: 31 VVLDFETTGLSPNQGDRAIEIGAVKLENGVIVDR-FQKLMNPGFRVSSFIA-NYTGITNA 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 L +++ EF DF Q +AHNA FD F++AEL I +D Sbjct: 89 MLMGADDCATVMHEFADFI--QGCNLVAHNASFDQRFLDAELDAIQRD 134 >gi|167755995|ref|ZP_02428122.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402] gi|167703987|gb|EDS18566.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402] Length = 443 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 24/171 (14%) Query: 13 DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEA------LKLHGI 65 D+ET + +N+ I IG + + D T + F V PEA ++L GI Sbjct: 9 DVETP--NYQNNSISSIGVINVDGDGVVTTKYFLV---------DPEAHFDRFNIELTGI 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E + D+P+F ++SE +F N+ +AHNA FD+ I+A LQR + P+ P Sbjct: 58 TPEMVADQPNFKEVWSEIEPYFT--NSLVVAHNAVFDLSVISACLQRYDL-PIFPIFYTC 114 Query: 126 TLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T I+R K PS+ LN L Y +T+ + H AL DS +++ ++ Sbjct: 115 TYRISRALKIPSNSYKLNDLSSYYHVTLDNH--HNALADSKACMEIFYYLL 163 >gi|219847899|ref|YP_002462332.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM 9485] gi|219542158|gb|ACL23896.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM 9485] Length = 280 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 8/150 (5%) Query: 10 IVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGLD +N RI E+ + ++ + + P R+ P+A +++GI E Sbjct: 16 VFFDVETTGLDLQNGHRICELAMLRR-EHRQITGQINTLINPE-RELDPQASQVNGIRAE 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + + Q A +AHN FD F+N EL R PL +DTL Sbjct: 74 DLQSAPRFAELTVQVVQL--SQQAVRVAHNLPFDESFLNMELARAGYPPLT-GPALDTLE 130 Query: 129 IARRKHPSSRN-DLNSLCKRYGI-TISHRS 156 +ARR + L +L +G+ T +HR+ Sbjct: 131 LARRLGIRRGSLSLGALATSFGLPTPTHRA 160 >gi|28898888|ref|NP_798493.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633] gi|260879442|ref|ZP_05891797.1| ribonuclease T [Vibrio parahaemolyticus AN-5034] gi|29611937|sp|P46232|RNT_VIBPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|28807107|dbj|BAC60377.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633] gi|308093530|gb|EFO43225.1| ribonuclease T [Vibrio parahaemolyticus AN-5034] gi|328474555|gb|EGF45360.1| ribonuclease T [Vibrio parahaemolyticus 10329] Length = 214 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D T + P G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEGANLEKEALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD+ F+NA +R + Sbjct: 80 IRDPFSPLRGAVSEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCG 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|307253947|ref|ZP_07535799.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256208|ref|ZP_07537995.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258402|ref|ZP_07540143.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306863151|gb|EFM95093.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865389|gb|EFM97285.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867586|gb|EFM99433.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 218 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 26/193 (13%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNG 52 KN+ R ++ D+ET GL+++ D ++E+ A+ L+ K + Q F G Sbjct: 12 KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPF---EG 68 Query: 53 RKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104 +P++LK +GI D L+ + E + Q A +AHNA FD Sbjct: 69 ANINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQA 128 Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ A ++RIN +DP P + DT ++A + L C+ I + H AL Sbjct: 129 FVQAAVKRINAKRDPFHPFAMFDTATLAGFMF--GQTVLVKACQMAKIPFDGKQAHSALY 186 Query: 163 DSHLLSDVYIKMM 175 D+ ++++ M+ Sbjct: 187 DTEKTTELFCAMV 199 >gi|91795118|ref|YP_564769.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] gi|91717120|gb|ABE57046.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] Length = 204 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/101 (40%), Positives = 58/101 (57%), Gaps = 5/101 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV+L+D + +FQ + P R NS + GI+++ Sbjct: 8 VVLDFETTGLSPDMGDRAIEIGAVKLVD-GQVVDSFQALINPGQRVNSFIE-QYTGISNQ 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 LKD P + + +F +F N +AHNA FD F++AE Sbjct: 66 MLKDAPRSNVVMGQFTEFIAGFN--LVAHNASFDKKFLDAE 104 >gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM 43183] gi|268312236|gb|ACY98610.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM 43183] Length = 605 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 14/166 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + I E+GAV++ + F + P G P L GIT + Sbjct: 45 VVVDLETTGGSPADSAITEVGAVKVRGGERLGE-FATLVDP-GVPIPPFITALTGITQQM 102 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P S++ F +F + +AHNA FD+GF+ A + P ++DT + Sbjct: 103 VTNAPPMSAVLPAFLEF--ARGCVLVAHNAPFDIGFLRAACT-AHDHPWPAFPVVDTADL 159 Query: 130 ARR---KHPSSRNDLNSLCK--RYGITISHRSKHGALLDSHLLSDV 170 ARR + L +L + R G HR AL D+ DV Sbjct: 160 ARRVLTREEVPNCKLATLARYFRTGTEPCHR----ALADARATVDV 201 >gi|270284149|ref|ZP_05965623.2| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093] gi|270277190|gb|EFA23044.1| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093] Length = 214 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 29/172 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I DIETTGL + + I EIGAV + D +R F + + P G+ L GI+D Sbjct: 19 ISLDIETTGLAPRQETITEIGAVRVRDGRIADR-FSMLINP-GKHIPSRITALTGISDAM 76 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--------NKDPLDPS 121 ++D P F D+ + I HN +FD+ F+ E + N ++P+ Sbjct: 77 VEDAPMIDEAIPAFVDWVDGD--RLIGHNIRFDLSFLLKEAMLLDAALATPFNAKAVNPA 134 Query: 122 RI---------------IDTLSIARRKHPSSRNDLNSLCKRYGI--TISHRS 156 + +DT+ I R PS R+ L+ L RYG+ T +HR+ Sbjct: 135 AMTTTAEITRAMLGPDPLDTMMIDRWLFPSERHRLSDLIVRYGVADTEAHRA 186 >gi|294155324|ref|YP_003559708.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli MP145] gi|291600469|gb|ADE19965.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli MP145] Length = 1447 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 32/226 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA--LKLHGITD 67 + FDIETTGL + +IE GA + + S +R Q F+ KNS A + L GITD Sbjct: 417 VCFDIETTGLSPRYHELIEFGATIIKNGSVISRE-QFFI---KAKNSLSAFTINLTGITD 472 Query: 68 EFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDP 120 + LK+ KP+ I F +N +AHN+ FD+ F+ Q+ NK + Sbjct: 473 QMLKNEGLELKPALLKISKLF------ENRIAVAHNSTFDMNFL---FQKFLDNKMEIPK 523 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDTL ++R S++ L + R GI + + H A D+ +L++ +I M + Sbjct: 524 TTFIDTLVVSRLLFSKDSKHRLENYVGRLGIIYNSDAAHRADYDAEILANAWIPSMNLLA 583 Query: 180 QINFG-------FKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRIT 217 +IN +K+N+ +FK+ V I+L ++ K LF ++ Sbjct: 584 EININTIVELRDYKSNQ-LYFKKFSDDVSVIALNQKGLKELFNFVS 628 >gi|308234286|ref|ZP_07665023.1| CRISPR-associated endoribonuclease Cas2 [Atopobium vaginae DSM 15829] Length = 297 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 17/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ DIET+GL+ +D+IIEIGA+ + D K +Q + + SP +L G+TD Sbjct: 131 VILDIETSGLNETDDKIIEIGAIRICD--KQVDDYQCLIKRDSLNLSPAITQLTGLTDIE 188 Query: 70 LKDK---PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L ++ P+ + + F + + +N FD+ FIN EL+ +N++ LD +R ID Sbjct: 189 LANRGVNPNLA--LNGLKQFIG--HLPVLGYNIAFDMRFINNELRSMNEELLD-NREIDV 243 Query: 127 LS-IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKM 174 + I + K L+++ K YGI T+ HR AL D+ L++ + +K+ Sbjct: 244 MRFIKKEKMFLESYALDNVLKVYGISATVPHR----ALGDAKLIAKLALKV 290 >gi|156975262|ref|YP_001446170.1| ribonuclease T [Vibrio harveyi ATCC BAA-1116] gi|269962098|ref|ZP_06176452.1| ribonuclease T [Vibrio harveyi 1DA3] gi|166200023|sp|A7MUL2|RNT_VIBHB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|156526856|gb|ABU71942.1| hypothetical protein VIBHAR_02991 [Vibrio harveyi ATCC BAA-1116] gi|269833182|gb|EEZ87287.1| ribonuclease T [Vibrio harveyi 1DA3] Length = 214 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHIEPFEGANLEKEALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD+ F+NA +R + Sbjct: 80 IRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNREAHSALYDTQQTAELFCG 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|296333022|ref|ZP_06875479.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674874|ref|YP_003866546.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii str. W23] gi|296149873|gb|EFG90765.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413118|gb|ADM38237.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii str. W23] Length = 954 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 95/185 (51%), Gaps = 11/185 (5%) Query: 2 IRKNKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 I NK R +V D+ETTG K D+II+I AV + + T R F ++ PN K+ P + Sbjct: 22 ILMNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN--KSIPAFI 78 Query: 61 -KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L GI+++ ++ + F ++ E + + A ++AHN FD+GF+ EL + L Sbjct: 79 EQLTGISNQMVEHEQPFEAVAEEVFHLLD--GAYFVAHNIHFDLGFVKYELHKAGFH-LP 135 Query: 120 PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++DT+ ++R P L L + + + H H A D+ + ++++++ Sbjct: 136 DCEVLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEILEKL 193 Query: 179 SQINF 183 Q+ + Sbjct: 194 RQLPY 198 >gi|262277835|ref|ZP_06055628.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium HIMB114] gi|262224938|gb|EEY75397.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium HIMB114] Length = 223 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 90/172 (52%), Gaps = 13/172 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD ETTGL+ + D+II + V++ ++ C + +PE ++H I++ Sbjct: 29 VFDTETTGLNYNSGDKIISVSGVKVQNFQIDTEGKLDEFCDPMVEITPENEQIHHISNRM 88 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-----I 124 +K KP+ + S+F FF + + +AHN KFD F+ + L + SRI + Sbjct: 89 VKGKPNIYDLESKFRGFF--KRSVLVAHNVKFDCNFLISNLSHTKLE----SRIREAVKL 142 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+ + +P ++ +L++LC IT + +H +L DS + + ++I ++ Sbjct: 143 DTVLYSAGVYPDLKSYELSALCDELNITHHDQLRHSSLGDSIITARLFIHLL 194 >gi|196248636|ref|ZP_03147336.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. G11MC16] gi|196211512|gb|EDY06271.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. G11MC16] Length = 911 Score = 65.1 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 15/174 (8%) Query: 7 MRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KL 62 MR ++ D+ETTG + K DRII++G + D S R F F P P L +L Sbjct: 3 MRFVIIDLETTGNVPKKGDRIIQLGMAVVEDGSIVKR-FASFFNPE----QPIPLFIQQL 57 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 I ++ ++ P F+ E + A ++AHN FD+ F+ AEL+R P Sbjct: 58 TNIDEQTVEGAPLFADKADEITAMM--EGAYFVAHNVDFDLPFLQAELERAGWPPFT-GP 114 Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDT+ +AR P++ + L L K+ G + H H A D+ + + ++I ++ Sbjct: 115 TIDTVELARIVLPTAESYKLGDLAKQLG--LHHDRPHQADSDAEVTAKLFIALL 166 >gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH] Length = 379 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 89/163 (54%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V +++ + + T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAVEHRITEIGVV-VVNANHVS-TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I + + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAPALLERLDGKL--FVAHNASFDRGFLRAEFERAGVA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALVPS--ARHRALADADLIWQFWQKL 172 >gi|163802823|ref|ZP_02196712.1| ribonuclease T [Vibrio sp. AND4] gi|159173363|gb|EDP58186.1| ribonuclease T [Vibrio sp. AND4] Length = 214 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L N T + P G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLSMDDTGNLHPASTIHFHIEPFEGANLEKEALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD+ F+NA +R + Sbjct: 80 IRDPFSPLRGAISEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNREAHSALYDTQQTAELFCG 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|138895754|ref|YP_001126207.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus thermodenitrificans NG80-2] gi|134267267|gb|ABO67462.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2] Length = 911 Score = 65.1 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 15/174 (8%) Query: 7 MRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KL 62 MR ++ D+ETTG + K DRII++G + D S R F F P P L +L Sbjct: 3 MRFVIIDLETTGNVPKKGDRIIQLGMAVVEDGSIVKR-FASFFNPE----QPIPLFIQQL 57 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 I ++ ++ P F+ E + A ++AHN FD+ F+ AEL+R P Sbjct: 58 TNIDEQTVEGAPLFADKADEITAMM--EGAYFVAHNVDFDLPFLQAELERAGWPPFT-GP 114 Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDT+ +AR P++ + L L K+ G + H H A D+ + + ++I ++ Sbjct: 115 TIDTVELARIVLPTAESYKLGDLAKQLG--LHHDRPHQADSDAEVTAKLFIALL 166 >gi|253573313|ref|ZP_04850656.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] gi|251846841|gb|EES74846.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] Length = 247 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 11/174 (6%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLH 63 +++ VFD+ETTG D I+ GA+++ T+ + P + PE ++L Sbjct: 60 ELKTAVFDLETTGFHYHYGDEILSFGAIKVEGERITDEVYYSLAKPACQ--IPERIIELT 117 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E + PS EF F +++ +AH + D F++ L + K L R+ Sbjct: 118 GITPEMAQSAPSLLEALREFMAFVDDRVL--VAHGSAHDKAFLDVALWKTTKAHLG-HRV 174 Query: 124 IDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ IAR+ P R L+ Y I ++ R H AL DS + + ++ ++ Sbjct: 175 LDTMMIARKLEPDRRISGSLDEWLAVYEIPVTKR--HHALEDSKMTAQLWTALI 226 >gi|229918731|ref|YP_002887377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Exiguobacterium sp. AT1b] gi|229470160|gb|ACQ71932.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sp. AT1b] Length = 936 Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG K+ D +IE AV + + R + + P+ R P +L I+DE Sbjct: 5 VIVDLETTGHSVKSGDELIEFAAVVVQEGEVIER-YSTLIRPS-RPIPPFITQLTTISDE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + + W + + ++AHN FD+ F+N L++ R IDT+ Sbjct: 63 DVSDAPTFEDVIPDIWKMLDGR--VFVAHNVAFDLTFLNESLEQAGYLAFQ-GRAIDTVE 119 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR +P+ + L +L + + H H AL D+ ++++I+M+ Sbjct: 120 LARILYPTLESHALEALSDTFDLV--HTDAHRALSDAEATAELFIRML 165 >gi|328950488|ref|YP_004367823.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis DSM 14884] gi|328450812|gb|AEB11713.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis DSM 14884] Length = 248 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 20/162 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-----LDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D+ETTGL + D IIE+ + + L+YS+ L GR P +L G Sbjct: 77 VVLDLETTGLSPERDEIIEVALIRVEGARRLEYSR--------LVNPGRPIPPRITRLTG 128 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I ++D+P ++ E + A + NA FD+GF+ +++ + +I Sbjct: 129 IRSGDVRDQPDVYTVLEEVVPLL--EGATLVIQNAPFDLGFLRPRFAKLSVTIRN--EVI 184 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH 165 DT+ ARR P R L+ L + + + RS+H A D+ Sbjct: 185 DTVQWARRALPGMRRRSLDHLIEVF--EVPKRSRHRAFEDAE 224 >gi|57168588|ref|ZP_00367721.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli RM2228] gi|57020093|gb|EAL56770.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli RM2228] Length = 251 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 102/192 (53%), Gaps = 18/192 (9%) Query: 3 RKNKMRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 R K+++ +F DIE+TG KN +I+EIGAV++ + + +R F K PE Sbjct: 61 RTKKIKEEIFCIVDIESTG-GIKNGQILEIGAVKIKNLQEIDR----FSSLVQVKEIPEN 115 Query: 60 L-KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + +L GI + +KD PS + + ++F F +++ ++AHN +FD GFI+ L L Sbjct: 116 ITELTGINLDMVKDAPSLTKVLNDFRLFL--KDSIFVAHNVRFDYGFISKALNECGFGIL 173 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 RI T+ A+ S R L+ L + GI +H H AL D+ ++++ K +G Sbjct: 174 LNRRIC-TIEFAQCCIESPRYKLDVLKELLGIKNAH---HRALNDALAAAEIF-KHCLG- 227 Query: 179 SQINFGFKTNED 190 ++ + KT E+ Sbjct: 228 -KLPYHIKTTEE 238 >gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2] gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2] Length = 1458 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSPEALKLHGITD 67 ++FDIETTGL D+IIE GA++ Y K + + Q+F+ P K S + + I++ Sbjct: 422 VIFDIETTGLSPYYDKIIEFGAIK---YHKGVQVESIQMFINPE-EKISDKIFAITKISN 477 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126 E +KD + DF + + IAHN KFD+ F+N +L+ NK + + +IDT Sbjct: 478 EDVKDALKIKEALVKIKDFIGD--SVLIAHNGIKFDLPFLNCKLEE-NKMDIIKNPLIDT 534 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L I+R + + L + ++Y I H A D+ L +++ +M+ Sbjct: 535 LQISRAINEQIHGHSLGVIARKYKIDYDETQAHRADKDAEYLLNIWKRML 584 >gi|160937823|ref|ZP_02085182.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC BAA-613] gi|158439262|gb|EDP17015.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC BAA-613] Length = 245 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D+ETTGL+++ D+I EI A+ + D + F + P GR+ L GITD+ Sbjct: 6 IALDLETTGLEARLDKITEIAALRVED-GRVEERFVTLVNP-GRQLGERITALTGITDDM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128 +KD P + F N + HN FD F+ + LD R IDTL Sbjct: 64 VKDAPVIEDTIGDVVRFCG--NLPLLGHNILFDYAFLK---RAAVNSGLDFEREGIDTLG 118 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 I R P + +L C Y +S + H A D+ +Y MM Sbjct: 119 ICRLFMPEDVKRNLTCACSFY--EVSQSAAHRAQADAEAAHGLYQVMMA 165 >gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264] gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4] gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264] gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264] Length = 379 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 89/163 (54%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V +++ + + T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAVEHRITEIGVV-VVNANHVS-TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I + + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAPALLERLDGKL--FVAHNASFDRGFLRAEFERAGVA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALVPS--ARHRALADADLIWQFWQKL 172 >gi|163751714|ref|ZP_02158932.1| putative DNA polymerase III [Shewanella benthica KT99] gi|161328366|gb|EDP99525.1| putative DNA polymerase III [Shewanella benthica KT99] Length = 206 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 7/167 (4%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D ETTGL ++ DR IEIGAV + D + TFQ + P G + S GI++ Sbjct: 10 IILDFETTGLSPNQGDRAIEIGAVRIQDGIVVD-TFQELMNP-GFRVSGFIAGYTGISNA 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + F DF N +AHNA FD F++AEL IN ++ Sbjct: 68 MLANAAPCEEVMARFADFIGNHN--LVAHNASFDQRFLDAELDAINLSY--GGEFACSML 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR + + N Y + H AL DS + + +++ M+ Sbjct: 124 IARRLYQDAPNHKLGGLVEYKQIENDGVFHRALADSEMTAKLWLLML 170 >gi|157165763|ref|YP_001466765.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826] gi|112800127|gb|EAT97471.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826] Length = 267 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 15/181 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 V DIETTG + N +IIEIGA+++ + ++ R F+ F+ + PE + +L GI Sbjct: 78 VVDIETTG-GTTNGQIIEIGAIKMKNGTEIGR-FESFVAAS---VVPENITELTGIRASD 132 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P+ ++ F F + +IAHN FD GFI+ L I L +R + T+ + Sbjct: 133 LVGAPNLLNVLERFKIFLG--TSVFIAHNVNFDYGFISHSLNEIGLGIL-LNRKLCTIDL 189 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 +RR S + L SL + GI +H H AL D+ ++++ V + F +T E Sbjct: 190 SRRTIASQKYGLGSLKELLGINNTH---HRALNDAIAAAEIF---KVCLKSLPFSIQTTE 243 Query: 190 D 190 D Sbjct: 244 D 244 >gi|328943837|ref|ZP_08241302.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Atopobium vaginae DSM 15829] gi|327491806|gb|EGF23580.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Atopobium vaginae DSM 15829] Length = 337 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 17/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ DIET+GL+ +D+IIEIGA+ + D K +Q + + SP +L G+TD Sbjct: 171 VILDIETSGLNETDDKIIEIGAIRICD--KQVDDYQCLIKRDSLNLSPAITQLTGLTDIE 228 Query: 70 LKDK---PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L ++ P+ + + F + + +N FD+ FIN EL+ +N++ LD +R ID Sbjct: 229 LANRGVNPNLA--LNGLKQFIG--HLPVLGYNIAFDMRFINNELRSMNEELLD-NREIDV 283 Query: 127 LS-IARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKM 174 + I + K L+++ K YGI T+ HR AL D+ L++ + +K+ Sbjct: 284 MRFIKKEKMFLESYALDNVLKVYGISATVPHR----ALGDAKLIAKLALKV 330 >gi|260578114|ref|ZP_05846035.1| exonuclease [Corynebacterium jeikeium ATCC 43734] gi|258603753|gb|EEW17009.1| exonuclease [Corynebacterium jeikeium ATCC 43734] Length = 198 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 30/185 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 IV D+ETTGL + +RIIEI A+ + + ++ + L PN + P+ + L GI+D Sbjct: 13 IVIDLETTGLRPQEERIIEIAALHIRNGELQDK-YTTLLNPN--LSVPQEITDLTGISDG 69 Query: 69 FLKDKPSFSSIFSEFWDFFN-------------EQNAEWIAHNAKFDVGFINAELQRIN- 114 L DKP+FS + E +F E + HN FD F+ E+ R Sbjct: 70 LLADKPTFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRTQL 129 Query: 115 ------KDPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSH 165 P P R++ T +R P R L ++ + I HR H A+ D+ Sbjct: 130 KNSADANRPYTP-RLVCTAEASRTLIPRESVGRYRLGNVASY--LKIPHRPLHRAMSDAL 186 Query: 166 LLSDV 170 DV Sbjct: 187 ATYDV 191 >gi|189485715|ref|YP_001956656.1| DNA polymerase III epsilon subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287674|dbj|BAG14195.1| DNA polymerase III epsilon subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 198 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 9/155 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGLD K I+EI +++ ++ + P G E K+H I D+ Sbjct: 19 VFLDIETTGLDPEKGANIVEIAMLKVC--GGIEERYESLVNP-GLPIPSECSKIHAIYDD 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ PSF I + F ++ + HNA FD+ F+ EL + P+ R IDTL Sbjct: 76 MIKNSPSFDEIAGNVFSFIG--HSVVVCHNAPFDLLFVYRELY-LAGVPVKNIRYIDTLK 132 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 +AR+ N L ++ GI R H A+ D Sbjct: 133 LARQYFSFDSNKLGNIADAIGIEAELR--HRAMAD 165 >gi|325529244|gb|EGD06199.1| DNA polymerase III, epsilon subunit [Burkholderia sp. TJI49] Length = 205 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL DR EI + L D +R +Q + GR+ + + L GIT++ Sbjct: 6 VLDFETTGLSPNLGDRATEIAVILLRDGQIVDR-YQSLM-NAGRRIPSDVVALTGITNDM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + + E F + +AHNA FD F AEL R+ D T+ + Sbjct: 64 IASAPPAAKVMKEAAAFVGKHAV--VAHNAGFDKRFWQAELGRL--DVSAEHAFACTMLV 119 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR +P +R+ L+SL + + S R+ H A++D+ + ++ ++ Sbjct: 120 ARRIYPDARSHRLSSLAEMLQLPKSGRA-HRAMVDAEMAGHLWCRL 164 >gi|497127|gb|AAA21572.1| RNase T [Vibrio parahaemolyticus] Length = 214 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D T + P G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEGANLEKEALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD+ F+NA +R + Sbjct: 80 IRDPFSPLRGAISEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCG 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|305433007|ref|ZP_07402163.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20] gi|304443708|gb|EFM36365.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20] Length = 253 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 102/192 (53%), Gaps = 18/192 (9%) Query: 3 RKNKMRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 R K+++ +F DIE+TG KN +I+EIGAV++ + + +R F K PE Sbjct: 63 RTKKIKEEIFCIVDIESTG-GIKNGQILEIGAVKIKNLQEIDR----FSSLVQVKEIPEN 117 Query: 60 L-KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + +L GI + +KD PS + + ++F F +++ ++AHN +FD GFI+ L L Sbjct: 118 ITELTGINLDMVKDAPSLTKVLNDFRLFL--KDSIFVAHNVRFDYGFISKALNECGFGIL 175 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 RI T+ A+ S R L+ L + GI +H H AL D+ ++++ K +G Sbjct: 176 LNRRIC-TIEFAQCCIESPRYKLDVLKELLGIKNAH---HRALNDALAAAEIF-KHCLG- 229 Query: 179 SQINFGFKTNED 190 ++ + KT E+ Sbjct: 230 -KLPYHIKTTEE 240 >gi|297625374|ref|YP_003687137.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921139|emb|CBL55686.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 203 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 11/164 (6%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG ++ DRIIEIG V L + + + P + + A ++H IT Sbjct: 6 VLDLETTGFSPARGDRIIEIGLVRLDPQGHVDDEWSTLVNP---RRTVRATRVHHITSAD 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 + P+ + + D ++ +AHN+ FDVGF+ AEL+ P +P + T+ Sbjct: 63 VAAAPTMAELAPGLVDKLRDRVV--VAHNSSFDVGFLTAELRTAGMTIPPEPIPSVCTMR 120 Query: 129 IARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + R H SR L C+ G+++ R H AL D+ ++++ Sbjct: 121 QSTRFLHARSRR-LVDCCEAAGVSL--RDAHSALGDARATAELF 161 >gi|294632065|ref|ZP_06710625.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] gi|292835398|gb|EFF93747.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] Length = 240 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 15/157 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68 I FD+ETTG D + RI+ +E+ D R + +L G P+A+ +HGI+ E Sbjct: 9 IGFDLETTGTDPRTARIVTAAVIEVRDGEPAGR--REWLADPGVPIPPDAVAVHGISTER 66 Query: 69 -FLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL------- 118 + +P+ + +E + +A+NA FD+ ++AEL+R L Sbjct: 67 AAAEGQPADRVADAIAEALTGYWRAGVPVVAYNAAFDLTLLSAELRRYGLPSLADRLGGA 126 Query: 119 DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITIS 153 +P ++D +I R ++ + L ++C YG+ + Sbjct: 127 EPGPVVDPYTIDRWADRYRRGKRTLEAVCTEYGVVLG 163 >gi|293189820|ref|ZP_06608534.1| putative DNA polymerase III, epsilon subunit [Actinomyces odontolyticus F0309] gi|292821235|gb|EFF80180.1| putative DNA polymerase III, epsilon subunit [Actinomyces odontolyticus F0309] Length = 540 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 12/172 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + + I EIGAV + D + + F + P+ R P L GIT Sbjct: 20 VVVDLETTGLGAGAE-ITEIGAVRIRDGAVVDE-FSSLVKPS-RPIPPFITSLTGITPAM 76 Query: 70 LKDKPSFSSIFSEF--WDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D +S+ F W ++ +AHNA FDVGF+ R P R++DT Sbjct: 77 VADADPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRA-ARACARPWPRVRVVDT 135 Query: 127 LSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L++AR P RN L ++ +G +H AL D+ +++ + + Sbjct: 136 LALARLALPRPLVRNHKLGTVASYFGTATV--PEHRALGDARATAEILLGFI 185 >gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] Length = 395 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 90/168 (53%), Gaps = 13/168 (7%) Query: 10 IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67 IVF D+ETTG + RI E+G VE+ + + V + ++ P ++ L GIT+ Sbjct: 27 IVFVDLETTGGSTAEHRITEVGVVEVGPAGVSRWSSLV----DPQQPIPSFIQQLTGITN 82 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P+F +I ++ N + ++AHNA FD GF+ E +R DP ++ T+ Sbjct: 83 AMVRGAPTFEAIAPALFERLNGKL--FVAHNASFDRGFLRGEFRRAGLA-FDPD-VLCTV 138 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P+ R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 139 RLSRALFPAEKRHGLDALVERHTLVPSDR--HRALADADLIWQFWQRL 184 >gi|120598713|ref|YP_963287.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1] gi|120558806|gb|ABM24733.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1] Length = 212 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 7/168 (4%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL ++ R IEIGAV L++ + F + P G + S GI+++ Sbjct: 14 VVLDFETSGLSPNQGARAIEIGAV-LIENGVITQRFSELMGP-GFRISSFIEDYTGISNQ 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ + + F DF + + +AHNA FD F++AE I+ + + +L Sbjct: 72 MLRNAAPCHEVMARFADFIGDNH--LVAHNAAFDQRFLDAEFAHIHHE--YQGQFACSLL 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +ARR +P + N + RY ++ + H AL D+ + +++ M+ Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLA 175 >gi|332361545|gb|EGJ39349.1| DNA polymerase III [Streptococcus sanguinis SK1056] Length = 814 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG + L++ +T++ + P+ + E +K Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIG-IALIENGIITKTYETDVNPHEELD--EHIK 56 Query: 62 -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 57 ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCGL--LDISLENAHTALADAQATAQLFLKI 165 >gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae KM-6054] Length = 329 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 12/163 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL ++DR+I G +L + + + P + P + +HG+T E L Sbjct: 27 VVDVETTGL-GRSDRVISAGVYQLDPDGEITDHWYTLVNP---QRDPGPVWIHGLTSEVL 82 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129 P+F + +EF + ++ +AHNA FD I+ E R + P++ + + T+ + Sbjct: 83 AGAPTFPEVAAEFAERLRDRVL--VAHNALFDWNMISREFSRAGLRAPVE--QRLCTMVL 138 Query: 130 AR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 AR + P L+SL + + R H AL D+ +L++V+ Sbjct: 139 ARDLRLPLPNGKLSSLAAHF--DVRQRQAHHALDDARVLAEVF 179 >gi|68535798|ref|YP_250503.1| putative exonuclease [Corynebacterium jeikeium K411] gi|68263397|emb|CAI36885.1| putative exonuclease [Corynebacterium jeikeium K411] Length = 198 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 30/185 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 IV D+ETTGL + +RIIEI A+ + + ++ + L PN + P+ + L GI+D Sbjct: 13 IVIDLETTGLRPQEERIIEIAALHIRNGELQDK-YTTLLNPN--LSVPQEITDLTGISDG 69 Query: 69 FLKDKPSFSSIFSEFWDFFN-------------EQNAEWIAHNAKFDVGFINAELQRIN- 114 L DKP+FS + E +F E + HN FD F+ E+ R Sbjct: 70 LLADKPTFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRTQL 129 Query: 115 ------KDPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSH 165 P P R++ T +R P R L ++ + + HR H A+ D+ Sbjct: 130 KNSAYANRPYTP-RLVCTAEASRTLIPRESVGRYRLGNVASY--LKVPHRPLHRAMSDAL 186 Query: 166 LLSDV 170 DV Sbjct: 187 ATYDV 191 >gi|291454901|ref|ZP_06594291.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] gi|291357850|gb|EFE84752.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 247 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 21/159 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTG D + RI+ +E+ D + R + +L G A +HGITD Sbjct: 19 IGFDLETTGTDPREARIVTAAVIEVADGER--RGHRTWLADPGIPIPAGATAVHGITDAR 76 Query: 70 LKDKPS----FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---------QRINKD 116 + S + +E + +A+NA FD+ + AEL +R+ Sbjct: 77 AAAEGSPPDRVADAVAEALTGYWRAGVPVVAYNAPFDLTLLAAELRRHRLPSLAERLGGA 136 Query: 117 PLDPSRIIDTLSIAR---RKHPSSRNDLNSLCKRYGITI 152 P+ P +ID L++ R R SR L+++C YG+T+ Sbjct: 137 PVGP--VIDPLTVDRAVDRYRKGSRR-LSAVCAEYGVTL 172 >gi|116696325|ref|YP_841901.1| putative exonuclease [Ralstonia eutropha H16] gi|113530824|emb|CAJ97171.1| putative exonuclease [Ralstonia eutropha H16] Length = 220 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 6/129 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFDIETTGLDS+ I+EIGA+ + S + TFQV + P+ RK + +L GIT Sbjct: 51 RFVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVLVKPS-RKVPKKITELTGITP 109 Query: 68 EFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++ + S S +F F N ++ NA+FD+ FI+ + + +P + Sbjct: 110 EMIEAEGVSLESAVQDFAKF--AGNLRLVSFNAEFDMAFISKAAGKSSITFANP--VSCA 165 Query: 127 LSIARRKHP 135 L ++RR P Sbjct: 166 LKMSRRAWP 174 >gi|90577496|ref|ZP_01233307.1| putative DNA polymerase III [Vibrio angustum S14] gi|90440582|gb|EAS65762.1| putative DNA polymerase III [Vibrio angustum S14] Length = 207 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL ++ DR IEIGAV+L++ ++ FQ + P G + S GI++ Sbjct: 11 VVLDFETTGLSPNQGDRAIEIGAVKLVNGEVVDQ-FQQLMNP-GFRVSSFIEGYTGISNN 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P + + F DF + N +AHNA FD F++AEL I + ++ Sbjct: 69 MLRTAPPCNEVMDAFADFIGDAN--LVAHNASFDQRFLDAELADIGR--YYTGTFTCSML 124 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKMM 175 IARR + + N L +L I H H AL DS + + +++ M+ Sbjct: 125 IARRLYQHAPNHKLGTLVDFK--HIEHNGVFHRALADSEMTARLWLVMI 171 >gi|260655785|ref|ZP_05861254.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1] gi|260629401|gb|EEX47595.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1] Length = 208 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIETTGL ++ IIE+GA++ + K F + P G +HGITD+ Sbjct: 13 VALDIETTGLSPRSCSIIEVGALKFVP-GKKGEEFSSLIDP-GCPIPASGRSIHGITDDM 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + +P + + DF A + HNA FD+ FI L ++ + + DTL + Sbjct: 71 VAGQPRVEEVIAGLLDFVGP--APLVLHNAPFDLSFIAPVLDKLGRK-WQAMTVFDTLPL 127 Query: 130 ARRKHPSSRN 139 +R P R+ Sbjct: 128 SRVAFPGLRS 137 >gi|307249394|ref|ZP_07531386.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858580|gb|EFM90644.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 218 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 26/193 (13%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNG 52 KN+ R ++ D+ET GL+++ D ++E+ A+ L+ K + Q F G Sbjct: 12 KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPF---EG 68 Query: 53 RKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104 +P++LK +GI D L+ + E + Q A +AHNA FD Sbjct: 69 ANINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQA 128 Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ A ++RIN +DP P + DT ++ + + L C+ I + H AL Sbjct: 129 FVQAAVKRINAKRDPFHPFAMFDTATLTGFMY--GQTVLVKACQMAKIPFDGKQAHSALY 186 Query: 163 DSHLLSDVYIKMM 175 D+ ++++ M+ Sbjct: 187 DTEKTTELFCAMV 199 >gi|125624796|ref|YP_001033279.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp. cremoris MG1363] gi|124493604|emb|CAL98589.1| Probable ATP-dependent helicase dinG homolog [Lactococcus lactis subsp. cremoris MG1363] gi|300071596|gb|ADJ60996.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 791 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 91/173 (52%), Gaps = 18/173 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E T S ++II+IG + L++ K T+ + P+ P +L G++D Sbjct: 3 RYAVVDLEATDAHSSENKIIQIG-IALVEGGKIVETYSTEVNPH-EPLLPRISELTGLSD 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-----FINAELQRINKDPLDPSR 122 + LK P FS + SE ++ ++AHNA+FD G F+NA L+ + Sbjct: 61 KQLKSAPDFSEVASEVRKLLT--DSVFVAHNARFDYGLLEKSFLNAGLE------FNEML 112 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +AR +P+ + L +L ++ + ++H H A+ D++ +++ I++ Sbjct: 113 RVDTVDLARVFYPTFEKYGLEALSEK--LDLAHDHPHAAVSDAYATAELLIRI 163 >gi|194246482|ref|YP_002004121.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] gi|193806839|emb|CAP18268.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] Length = 1522 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 15/174 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALK-LHG 64 M +VFDIETTG D+IIEI ++ K N Q + N + PE + L Sbjct: 414 MEYVVFDIETTGFSKVRDKIIEISGFKI----KNNIVIDQFYSLVNPEIDLPENIYLLTK 469 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRI 123 I +E LK+ P + +F F +N +AHNA FDV FI + +++N PL P + Sbjct: 470 IKNETLKNAPKILQVLPDFLKFI--KNTCLVAHNASFDVSFIFEKSKQLNISFPLLP--V 525 Query: 124 IDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDTL++++ S L L ++ + + H A D+ +++++K++ Sbjct: 526 IDTLALSQYYFSSFMKFFSLKRLAAKFKVKLEEH--HRAKDDAKATTEIFMKIL 577 >gi|119717352|ref|YP_924317.1| hypothetical protein Noca_3128 [Nocardioides sp. JS614] gi|119538013|gb|ABL82630.1| DNA polymerase III, epsilon subunit [Nocardioides sp. JS614] Length = 601 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 23/184 (12%) Query: 10 IVFDIETTGLDSKNDRII-EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67 V D+ETTG ++ +I EIGAV++ + FQ + N R P + L GI++ Sbjct: 31 CVVDLETTGGSAEGGAMITEIGAVKVRG-GEVLGEFQTLV--NPRTEIPAFIAVLTGISN 87 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRINKDPLDPSRIID 125 + D P + F +F + +AHNA FDVGF+ AE Q P ++D Sbjct: 88 SMVADAPPVEAALPAFLEF--AAGSVLVAHNAPFDVGFLRYFAEQQ---GRPWPGFEVVD 142 Query: 126 TLSIARRKHPSSRND-----LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGG 178 T +ARR SR+D L+SL K +G T + H AL D+ DV +M +GG Sbjct: 143 TARLARRV--VSRDDAPNCKLSSLAKAFGSTTT--PNHRALSDARATVDVLHGLMERLGG 198 Query: 179 SQIN 182 ++ Sbjct: 199 VGVH 202 >gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 466 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 20/161 (12%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNGRKNSPEAL-KLHGITDEFL 70 DIETTG DRI EIG L N QV+ N + P+ + +L GI+ + + Sbjct: 15 DIETTGSHFDRDRITEIGIKTL-----ANDGIQVWERLINPQTFIPQNIQRLTGISPQMV 69 Query: 71 KDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +PSF + E +Q E ++AHNA+FD GFI A +R+ D P +++ T+ Sbjct: 70 EGQPSFDQVAKEL-----KQELEGKIFVAHNARFDYGFIKASFKRVGID-FKP-KVLCTV 122 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLL 167 ++R P R++L+++ +G+ +S R H AL D+ LL Sbjct: 123 KLSRLLFPEQPRHNLDTIINAHGLQVSAR--HRALGDADLL 161 >gi|257461276|ref|ZP_05626373.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268] gi|257441304|gb|EEV16450.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268] Length = 268 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 74/152 (48%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 DIET G N +IIEIGA++ + +R P +N E L GI + L Sbjct: 77 DIETNG-GLSNGQIIEIGAIKTRGTQELDRFESFVYAPVVPENITE---LTGICADDLVG 132 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P +S+ F F ++ ++AHN KFD GFI+A LQ+ L R+ T+ +ARR Sbjct: 133 APPLASVLERFRLFLG--DSVFVAHNVKFDYGFIDASLQKCGFGMLLNRRLC-TVELARR 189 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + R L SL + G+ H H AL D+ Sbjct: 190 TIEAQRYGLGSLKELLGVQNVH---HRALSDA 218 >gi|116512711|ref|YP_811618.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11] gi|116108365|gb|ABJ73505.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11] Length = 791 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 91/173 (52%), Gaps = 18/173 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E T S ++II+IG + L++ K T+ + P+ P +L G++D Sbjct: 3 RYAVVDLEATDAHSSENKIIQIG-IALVEGGKIVETYSTEVNPH-EPLLPRISELTGLSD 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-----FINAELQRINKDPLDPSR 122 + LK P FS + SE ++ ++AHNA+FD G F+NA L+ + Sbjct: 61 KQLKSAPDFSEVASEVRKLLT--DSVFVAHNARFDYGLLEKSFLNAGLE------FNEML 112 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +AR +P+ + L +L ++ + ++H H A+ D++ +++ I++ Sbjct: 113 RVDTVDLARVFYPTFEKYGLEALSEK--LDLAHDHPHAAVSDAYATAELLIRI 163 >gi|332306380|ref|YP_004434231.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173709|gb|AEE22963.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 788 Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG RI EIGAV++++ + ++ + P R+ +L GI+++ Sbjct: 624 VVVDVETTGGCKPGHRITEIGAVKVIN-GRVVDSWSSLINPE-RRVPHFITRLTGISNDM 681 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P F + + F Q+ ++AHN FD GF E R+ + P + T+ Sbjct: 682 VEEAPLFCEVIDDLECFM--QDCIFVAHNVNFDYGFFKLEYARLERSFSMPK--LCTVRE 737 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 R+ +P S++ L +L K YG+++ + H AL D+ +++ I Sbjct: 738 MRKYYPGSKSYSLGNLTKEYGLSLDNH--HRALCDAQAAAELLI 779 >gi|268680225|ref|YP_003304656.1| DNA polymerase III subunit epsilon [Sulfurospirillum deleyianum DSM 6946] gi|268618256|gb|ACZ12621.1| DNA polymerase III, epsilon subunit [Sulfurospirillum deleyianum DSM 6946] Length = 260 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 10/165 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 + DIE G D IIEIGAV +++ K F PE++ +L GIT E Sbjct: 73 IVDIEANGSKPALDAIIEIGAV-MVEKGKIVGEFSSL---AKTDVLPESIVQLTGITLEE 128 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L PS +S+ F F ++A ++AHN FD FI+ L+ PL +R +DT+ + Sbjct: 129 LSFAPSLNSVLEGFRLFI--KDAVFVAHNVNFDYYFISHSLEMAGFGPL-LNRRLDTIDL 185 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 AR+ + + L++L + GIT + H AL D+ ++V + + Sbjct: 186 ARKCIEAPKYGLSALAEHLGITFENH--HRALYDAKATTEVLLHV 228 >gi|310642523|ref|YP_003947281.1| dnaq family exonuclease/ding family helicase [Paenibacillus polymyxa SC2] gi|309247473|gb|ADO57040.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus polymyxa SC2] Length = 960 Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65 M+ V D ETTG S +D II++G + ++D+ + +R + ++ P GR P L GI Sbjct: 1 MKFAVLDFETTGTQSADD-IIQVG-LAIIDHDNSISRVYGSYVNP-GRSIPPFITGLTGI 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ +KD P+ + E ++ + HN FD F+ + L R P RI+D Sbjct: 58 TDDDVKDAPALEEMMMELVPMLDD--VVLVGHNVAFDFNFLQSALDRCGYLPFS-GRILD 114 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ + PS S L + +G ++H H A D+ ++V++K + Sbjct: 115 TMDFLKIMFPSLSSYQLGFVSSEFG--LAHDRPHQADSDALATAEVFLKCL 163 >gi|300087648|ref|YP_003758170.1| DNA polymerase III subunit epsilon [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527381|gb|ADJ25849.1| DNA polymerase III, epsilon subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 260 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 8/162 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL+ DRI+EI V+LL D ++ +R+ L G A +HGITD+ Sbjct: 11 VFFDLETTGLNPLKDRIVEITLVKLLPDGTEESRS---RLIDPGIPIPETATAIHGITDD 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-PLDPSRIIDT 126 + +PSF+ I F DF + + N KFD+ + AE +R D RIIDT Sbjct: 68 RVAGQPSFNRIAKSFRDFL--EGCDLCGFNIKKFDIPMLEAEFRRAGVDFSRAGRRIIDT 125 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 I + HP SL + H S A + +LS Sbjct: 126 QVIFHKFHPRGLEAAYSLYCGKQLANLHSSDADARACAEILS 167 >gi|239983070|ref|ZP_04705594.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 237 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 21/159 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTG D + RI+ +E+ D + R + +L G A +HGITD Sbjct: 9 IGFDLETTGTDPREARIVTAAVIEVADGER--RGHRTWLADPGIPIPAGATAVHGITDAR 66 Query: 70 LKDKPS----FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---------QRINKD 116 + S + +E + +A+NA FD+ + AEL +R+ Sbjct: 67 AAAEGSPPDRVADAVAEALTGYWRAGVPVVAYNAPFDLTLLAAELRRHRLPSLAERLGGA 126 Query: 117 PLDPSRIIDTLSIAR---RKHPSSRNDLNSLCKRYGITI 152 P+ P +ID L++ R R SR L+++C YG+T+ Sbjct: 127 PVGP--VIDPLTVDRAVDRYRKGSRR-LSAVCAEYGVTL 162 >gi|194468010|ref|ZP_03073996.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri 100-23] gi|194452863|gb|EDX41761.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri 100-23] Length = 954 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 19/172 (11%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTG + + DRII+IG V + D N F+ + P R+ P ++ +L GI D+ Sbjct: 21 VVDLETTGTNVNHGDRIIQIGCVLVQDGEIINH-FETKINP--REKIPRSIVQLTGIEDK 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127 ++ P F I + E ++AHN FD F+NAEL+R L P+ IDT+ Sbjct: 78 DVRKAPLFEDIAGTIYSLLAE--TTFVAHNVNFDFPFLNAELERAGYPSLSIPA--IDTV 133 Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++++ P++++ DL S + I H H A+ D+ +++ ++ Sbjct: 134 TLSQILLPTAKSFRLRDLTS-----SLHIEHDHPHSAVSDAEATAELLTDLL 180 >gi|224541223|ref|ZP_03681762.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM 15897] gi|224525868|gb|EEF94973.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM 15897] Length = 212 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 86/191 (45%), Gaps = 24/191 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--------- 60 IV DIE TGL+ + +R+IE+ A++ +++ + R F + P R P L Sbjct: 16 IVVDIEATGLNPETERLIEVAAIKYINHKEVAR-FSELINP-LRDQLPVDLLDKDKTIYI 73 Query: 61 -----KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 L GI++ L D + E+ F N I HN +FD+ FI L R + Sbjct: 74 SDFIENLTGISNRMLHDARGEKDVLREYIKFIG--NDVIIGHNVRFDIRFIYDALLR-DY 130 Query: 116 DPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L + IDTL IAR+ R L L Y I SH H A+ D + DVY + Sbjct: 131 GVLFQNDYIDTLKIARKLLHEDLKRYRLKDLADHYHIDYSH--AHRAVNDCEITHDVY-E 187 Query: 174 MMVGGSQINFG 184 MM+ NFG Sbjct: 188 MMMEDIFNNFG 198 >gi|212634649|ref|YP_002311174.1| ribonuclease T [Shewanella piezotolerans WP3] gi|212556133|gb|ACJ28587.1| Ribonuclease T [Shewanella piezotolerans WP3] Length = 235 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 26/193 (13%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRK 54 KN+ R +V D+ET G +SK D ++EI AV +L + ++T + P G Sbjct: 15 KNRFRGYFPVVIDVETAGFNSKTDALLEI-AVTMLKMDDDGVLQLDKTLHYHIEPFEGAN 73 Query: 55 NSPEALKLHGI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAEW-----IAHNAKFDVG 104 PEAL +GI T+ + +K +F IF E ++ +E +AHNA FD G Sbjct: 74 LEPEALAFNGIDPTNPLRGAVSEKEAFLEIFKEVKK--AQKASECHRSIIVAHNAAFDHG 131 Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F++ ++R + + P P DT ++A + L C GI +R H AL Sbjct: 132 FVSEAIERNGLKRTPFHPFATFDTAALAGLA--IGQTVLAKACAMAGIPFDNREAHSALY 189 Query: 163 DSHLLSDVYIKMM 175 D+ ++++ ++ Sbjct: 190 DTERTAELFCLIV 202 >gi|317056777|ref|YP_004105244.1| DNA polymerase III subunit alpha [Ruminococcus albus 7] gi|315449046|gb|ADU22610.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7] Length = 1500 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 8/166 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTG ++K D+IIEIGAV+L + ++ F + + P + L ITD+ Sbjct: 450 ICFDLETTGTNAKEDKIIEIGAVKLRNLEIVDK-FDMLVDPE-VPLTEFISNLTNITDDM 507 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LK + + F F + +AHNA FD GFI +R+ D S +DT+ + Sbjct: 508 LKGQADIRTAIDAFIAFCGDSPC-LVAHNAPFDTGFIRNTCERLGIDFNFSS--VDTVPM 564 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ P R+ LN + + +G H D+ +L ++I++ Sbjct: 565 SQLMLPQLERHKLNYVAEHFG--YGDFQHHRGCDDAEVLGHIFIEL 608 >gi|290969003|ref|ZP_06560538.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Megasphaera genomosp. type_1 str. 28L] gi|290780959|gb|EFD93552.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Megasphaera genomosp. type_1 str. 28L] Length = 869 Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 15/216 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+E+TG + D II+I AV L F +L P+ + ++ +HG++DEF Sbjct: 501 IVFDVESTGTNPLQDEIIQIAAVRLRTDGTIQEKFMTYLRPS--RTVGDSYAIHGLSDEF 558 Query: 70 L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L K+ F F +++ + HN +D+ + +EL R++ +DTL Sbjct: 559 LQKNGTDARRALQNFLTF--AKDSLIVGHNVLYDISILQSELSRLSLPCPTEMPYMDTLD 616 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA----LLDSHLLSDVYIKMMVGGSQINF 183 I RR +P + L L + + +H+ H A L + LL V + ++ + Sbjct: 617 IYRRFYPDLEKYTLEFLSHHF--STAHKPSHNAWDDILATADLLQTVLQEKILSQTATRR 674 Query: 184 G-FKTNEDRF--FKEEKKTVPNISLLKRDKPLFTRI 216 F T RF F E+ + S R L TRI Sbjct: 675 ELFTTYAHRFISFSEKISALRRQSYSLRPHELLTRI 710 >gi|170697844|ref|ZP_02888929.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] gi|170137231|gb|EDT05474.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] Length = 205 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL DR EI + L D +R +Q + GR+ + + L GIT+E Sbjct: 6 VLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLM-NAGRRIPSDVVALTGITNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P S + E F N +AHNA FD F AEL + T+ + Sbjct: 64 IASAPPVSQVMKEAAAFVG--NHPLVAHNAGFDKRFWQAELGMLGMAA--EHAFACTMLV 119 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR +P +R+ L+SL + + R+ H A++D+ + S ++ ++ Sbjct: 120 ARRIYPHARSHRLSSLADMLRLPQTGRA-HRAMVDAEIASHLWCRL 164 >gi|89098849|ref|ZP_01171730.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911] gi|89086525|gb|EAR65645.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911] Length = 243 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 7/169 (4%) Query: 5 NKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++M IV DIETTG + D II IGAV++ + + L + SP+ +L Sbjct: 55 DRMEAIVMDIETTGFFPDQGDEIISIGAVKIENGTINEDKKFYSLIRYEKTLSPQIEQLT 114 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 G+ LK+ P + EF+ F + IAH+A+ + F+ + K PL RI Sbjct: 115 GLRGSQLKEAPPLPEVLIEFFKFCEARTI--IAHHARHEKSFLQNASWKHFKAPLK-HRI 171 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IDT + R P + L LC GI + R H AL D+ L ++++ Sbjct: 172 IDTSFLYRIAEPELNLQRLEDLCSHNGIPVMER--HHALEDARLAAELW 218 >gi|210621010|ref|ZP_03292395.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275] gi|210154994|gb|EEA86000.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275] Length = 276 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 7/124 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL++ + I EI A++ DY + F ++ P +K + L GIT+E Sbjct: 97 IVFDLETTGLEAHKEAITEIAAIK-FDYDEPVEYFHTYVNPK-KKIREKITDLTGITNEM 154 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + P + F F ++ I+HN FD+ FI + + K P ++ IDTL+ Sbjct: 155 VASAPPIEYVLPNFLKFIDKYT--LISHNVSFDMSFILDPMYNLGYKKP--GNKAIDTLA 210 Query: 129 IARR 132 +ARR Sbjct: 211 LARR 214 >gi|291557306|emb|CBL34423.1| CRISPR-associated protein Cas2, E. coli subfamily [Eubacterium siraeum V10Sc8a] Length = 268 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 V DIETTGL+ +D IIE+GAV + + S T+ V + + K PEA+ +L GIT+E Sbjct: 107 VIDIETTGLNP-DDEIIELGAVTVENGS-VAETYSVLVKTD--KKIPEAIIRLTGITEEL 162 Query: 70 LKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + S SEF N + + HN FD+ FI + NK PS+IIDT+ Sbjct: 163 LASEGTDKSKALSEFAMRCNGK--PLVGHNIGFDLNFIKSACAE-NKIDFVPSKIIDTVK 219 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I+R+ + L ++ + + + H AL D L +Y K+ Sbjct: 220 ISRKLLDINSYSLAAIADYFDLHYNKDRIHRALDDCLLTQRIYEKL 265 >gi|212640084|ref|YP_002316604.1| Exonuclease [Anoxybacillus flavithermus WK1] gi|212561564|gb|ACJ34619.1| Exonuclease [Anoxybacillus flavithermus WK1] Length = 222 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 8/169 (4%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTG DR+IEIGAV++ + + TF ++ PN R P ++L IT+E Sbjct: 31 VFDTETTGFHVATVDRLIEIGAVQVKGTAVIEDETFHTYVNPN-RDLPPVIVELTNITEE 89 Query: 69 FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K P+ +F+ F + Q+ ++ H FD+ + EL+R P+ IDTL Sbjct: 90 KVKHAPTAIEALQQFFQFVEQKQSVCFVGHYISFDLFVLKHELRREKMKFRKPT-FIDTL 148 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + PS DL + +G + R H A+ D+ + ++++++ Sbjct: 149 DLIGFIAPSYDMRDLERYAQAFGTRMYER--HSAIGDALTTAYLFVELL 195 >gi|238060312|ref|ZP_04605021.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149] gi|237882123|gb|EEP70951.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149] Length = 604 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 94/224 (41%), Gaps = 29/224 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG I EIGAV++ + + P G P L GIT Sbjct: 53 VVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQAM 110 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P + F +F +A +AHNA +DVGF+ A R +P R++DT ++ Sbjct: 111 LVPAPPIEQVLPSFLEFV--ADAVLVAHNAPYDVGFLKAACARHGYRWPNP-RVLDTAAL 167 Query: 130 ARRKHPSSRNDLNSLCKRYGITISH-----RSKHGALLDSHLLSDV---YIKMMVG---- 177 ARR R+++ + ++ G S+ R H AL D+ DV I + G Sbjct: 168 ARRVL--GRDEVPN--RKLGTLASYFRTATRPTHRALDDAKATVDVLHGLIARLGGHRVD 223 Query: 178 --GSQINFGFKTNED----RFFKEEKKTVPNISLLKR--DKPLF 213 G I F R + VP I + + D+PL+ Sbjct: 224 TVGEAIEFARAVTPTQRRKRHLADGLPKVPGIYIFRAADDRPLY 267 >gi|89072880|ref|ZP_01159437.1| putative DNA polymerase III [Photobacterium sp. SKA34] gi|89051402|gb|EAR56857.1| putative DNA polymerase III [Photobacterium sp. SKA34] Length = 207 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 21/174 (12%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITD 67 +V D ETTGL ++ DR IEIGAV+L++ ++ FQ + P R +S E GI++ Sbjct: 11 VVLDFETTGLSPNQGDRAIEIGAVKLVNGEIVDQ-FQQLMNPGFRVSSFIEGYT--GISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L+ P + F DF + N +AHNA FD F++AEL I + ++ Sbjct: 68 NMLRTAPPCHEVMDAFADFIGDAN--LVAHNASFDQRFLDAELADIGR--YYTGTFTCSM 123 Query: 128 SIARRKHPSSRND-LNSLC-----KRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR + + N L +L K G+ H AL DS + + +++ M+ Sbjct: 124 LIARRLYQHAPNHKLGTLVDFKHIKHNGVF------HRALADSEMTARLWLVML 171 >gi|257439598|ref|ZP_05615353.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] gi|257197965|gb|EEU96249.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] Length = 1417 Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 8/166 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD ETTGLD + + EIGAV ++ + F F+ P G+ +P+ +L GIT+E + Sbjct: 399 VFDTETTGLDPGVEYLTEIGAV-IVRNGEVVEEFDTFVKP-GKPITPKITELTGITNEMV 456 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129 D P F F + + +AHNA FD+ F+ A +R + +P+ IDTL++ Sbjct: 457 ADAPGEKEALEAFLRFADGRIL--VAHNAHAFDIRFLKAAAKR-SGISFEPT-YIDTLTM 512 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ +P N ++ + + H A DS L ++ M+ Sbjct: 513 AQAMYPGLHNYKQGTINKH-LELPSYEAHRACEDSAALGRIFCVML 557 >gi|227510342|ref|ZP_03940391.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189994|gb|EEI70061.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 945 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 9/153 (5%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKL 62 +K V DIETTG D S ++RII+ L+ + K T+ + P ++ PE ++L Sbjct: 3 SKTTYAVVDIETTGTDMSVDNRIIQFSCT-LVAHGKIVETYVSDINP--QREVPERIIQL 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT E LK P+F + S+ + + ++AHN FD F+N E QR+ LD Sbjct: 60 TGITPERLKKAPTFDQVSSKLYKLLS--GTVFVAHNVNFDFPFLNGEFQRVGYPELD-IE 116 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154 IDT+++++ P+ S L L + I +H Sbjct: 117 AIDTVTLSQILLPTLSSYRLQDLSAYFNIIHNH 149 >gi|295398912|ref|ZP_06808894.1| DnaQ family exonuclease/DinG family helicase [Geobacillus thermoglucosidasius C56-YS93] gi|294978378|gb|EFG53974.1| DnaQ family exonuclease/DinG family helicase [Geobacillus thermoglucosidasius C56-YS93] Length = 921 Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 9/172 (5%) Query: 6 KMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K R ++ D+ETTG + K DRII++G V +++ + F F P R P +L Sbjct: 2 KDRFVIMDLETTGNVPKKGDRIIQLGMV-VVENGQIIERFSSFFNPE-RDIPPFVQQLTN 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I ++ + D P F+ ++ D Q + ++AHN FD+ F+ EL P I Sbjct: 60 INEQMVADAPVFAEEAAKVVDML--QQSYFVAHNVSFDLQFLQEELHMAGFPPFS-GPTI 116 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+ +AR P + + L L K + I+H H A D+ + + ++I ++ Sbjct: 117 DTVELARIVFPDAESYKLADLAKL--LCIAHDQPHHADSDAEVTAKLFIALL 166 >gi|172040912|ref|YP_001800626.1| putative exonuclease [Corynebacterium urealyticum DSM 7109] gi|171852216|emb|CAQ05192.1| putative exonuclease [Corynebacterium urealyticum DSM 7109] Length = 270 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 6/117 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+ETTGL+ DR+IEI AV +++ +F L P E+ ++G+ D Sbjct: 90 RCAVVDLETTGLEPATDRVIEI-AVLTVEHGSIVGSFHCLLNPECSIPG-ESSNINGLRD 147 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + + P+F+ + E N + HN KFDVGF+ AE R+ D +R++ Sbjct: 148 DDVANSPTFAEVAQELLPHV--LNRTLVGHNVKFDVGFLAAEYARLGH--ADAARVL 200 >gi|15616394|ref|NP_244699.1| hypothetical protein BH3832 [Bacillus halodurans C-125] gi|10176457|dbj|BAB07551.1| BH3832 [Bacillus halodurans C-125] Length = 265 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 12/191 (6%) Query: 5 NKMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPE-ALK 61 K+ +VFD+ET+G + DRI+ IGAV+++ + + TF + + PE L+ Sbjct: 76 EKLPVVVFDLETSGFYPDQGDRILSIGAVKVVGLTIQEEETF--YSVVHTDTVPPENILE 133 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G++ E L+ P +S+ F+ F +++ +AH+A + F++ + K P + Sbjct: 134 LTGLSVEELEAAPPLTSVLESFYAFI--RHSTLVAHHASHEKAFMSHVTWQTMKLPFE-H 190 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R+IDT + + P L+ C Y I + +R H A DS + + ++I + + Sbjct: 191 RVIDTSFLTKIVAPQELVTLDDCCAYYSIPVQNR--HHAFEDSLMTAKLWIAAIAAAREA 248 Query: 182 NFGFKTNEDRF 192 GF+T D + Sbjct: 249 --GFETLRDIY 257 >gi|317128725|ref|YP_004095007.1| exonuclease RNase T and DNA polymerase III [Bacillus cellulosilyticus DSM 2522] gi|315473673|gb|ADU30276.1| Exonuclease RNase T and DNA polymerase III [Bacillus cellulosilyticus DSM 2522] Length = 242 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 9/163 (5%) Query: 5 NKMRKIVFDIETTGLDSKN-DRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL 62 +K+ +VFD+ETTG N DRI+ IG +++ D + TF + NG S E KL Sbjct: 53 SKLDVVVFDLETTGFYPNNGDRILSIGGIKVKGDKVIDSETFYSLINSNGGV-SEEITKL 111 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 IT++ L + P + + F+ F + +AH+A + F+ I K + R Sbjct: 112 TNITEKDLIEAPPINDVLQNFYTFMS--GCTLVAHHANHERSFMQHMTWSILKSRFE-HR 168 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164 IIDT + + P+ L+ C YGITI + +H AL D+ Sbjct: 169 IIDTAFLTKIVEPNKNLVSLDECCDHYGITI--KKRHHALYDA 209 >gi|312110481|ref|YP_003988797.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y4.1MC1] gi|311215582|gb|ADP74186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y4.1MC1] Length = 921 Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 9/172 (5%) Query: 6 KMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K R ++ D+ETTG + K DRII++G V +++ + F F P R P +L Sbjct: 2 KDRFVIMDLETTGNVPKKGDRIIQLGMV-VVENGQIIERFSSFFNPE-RDIPPFVQQLTN 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I ++ + D P F+ ++ D Q + ++AHN FD+ F+ EL P I Sbjct: 60 INEQMVADAPVFAEEAAKVVDML--QQSYFVAHNVSFDLQFLQEELHMAGFPPFS-GPTI 116 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+ +AR P + + L L K + I+H H A D+ + + ++I ++ Sbjct: 117 DTVELARIVFPDAESYKLADLAKL--LCIAHDQPHHADSDAEVTAKLFIALL 166 >gi|226312093|ref|YP_002771987.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599] gi|226095041|dbj|BAH43483.1| probable ATP-dependent helicase [Brevibacillus brevis NBRC 100599] Length = 967 Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG + D II+IGAV + D + +F + P G+ P +L GIT Sbjct: 3 RLLVVDFETTGSHPRQGDSIIQIGAVAI-DDGQITESFSTLIHP-GQDIPPFITQLTGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + D PS +F +F + + ++AHNA FD+ F+ L D ++DT Sbjct: 61 NEMVADAPSLEEVFPDFLRLLDGR--AFVAHNASFDLQFLQEALLSQGYYAFD-GYVLDT 117 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++R P + L L + I H + H A D+ + +++ ++ Sbjct: 118 VELSRVLLPMQNSYRLGELASE--LEIEHDNPHQADSDALATAQLFLHLL 165 >gi|260587424|ref|ZP_05853337.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] gi|331083705|ref|ZP_08332816.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542291|gb|EEX22860.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] gi|330403916|gb|EGG83468.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium 6_1_63FAA] Length = 236 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 11/160 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65 M + D+ETTGL+ DRIIEIGAV++ + + N + P+ + +L GI Sbjct: 2 MEYVALDLETTGLEPSKDRIIEIGAVKVRNKEVVGEYGTLI---NPQMEIPDRITELTGI 58 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +++ ++ KP + E DF E + HN FD F+ Q +N + + +D Sbjct: 59 SNDMVQGKPLIAQALGELLDFCEE--LPLLGHNLMFDYSFVKH--QAVNAGMVFEKKGMD 114 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 TL +AR P L +L Y I + H AL D+ Sbjct: 115 TLKLARALLPELPSRSLQNLRMHY--EIPQKDAHRALEDA 152 >gi|303238571|ref|ZP_07325105.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2] gi|302593969|gb|EFL63683.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2] Length = 1446 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 13/151 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG ++I E+G ++L D K F F+ P + +++ ITD + Sbjct: 425 VLDLETTGFSPLTEKITEVGIMKLKD-GKVIDQFSCFVNPE-KPIPARVVEVTNITDYMV 482 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTLS 128 +D + +F + +F + + +AHNA+FD+GF+ NA++ N D +DTLS Sbjct: 483 QDAETIEKVFPKMLEFI--EGSVLVAHNAEFDIGFLKHNAKVLGYNFD----FTYLDTLS 536 Query: 129 IARRKHPSSRN-DLNSLCKRYGIT--ISHRS 156 +A+ P ++ L + K GI ++HR+ Sbjct: 537 LAKEIFPDYKSYKLGRIAKNLGIKVDVAHRA 567 >gi|313202457|ref|YP_004041115.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688] gi|312441773|gb|ADQ85879.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688] Length = 473 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 9/161 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTG DRI EI + + + +R +Q + P P +L GI D Sbjct: 6 VLLDLETTGATPLVDRITEIALIRFENGQEVSR-WQTLVNPE-TAIPPFIQRLTGIDDGM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F + E D + A AHN +FD GF+ E +RI D +++ T+ + Sbjct: 64 VATAPHFKEVAGELLDHL--EGAVLCAHNVRFDHGFLKNEFKRIGIDLRQ--KVLCTVKL 119 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 +R+ +P R + L+S+ +R+ + ++H A+ D L D Sbjct: 120 SRKLYPQHRSHSLDSIIERHSLQCG--ARHRAMGDVVALVD 158 >gi|313115651|ref|ZP_07801107.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310622037|gb|EFQ05536.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 1417 Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 16/194 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD ETTGLD + + EIGAV ++ + F F+ P G+ +P+ +L GIT+E + Sbjct: 399 VFDTETTGLDPGVEYMTEIGAV-IVKNGEVVEEFDTFVKP-GKPITPKITELTGITNEMV 456 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129 D P F F ++ + HN FD+ F+ A +R + L+P+ IDTL++ Sbjct: 457 ADAPGEKEALEAFLKFAGDRIL--VGHNVHAFDMRFLRAAAKR-SGIKLEPT-YIDTLTM 512 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH--------LLSDVYIKMMVGGSQI 181 A+ +P N ++ + + H A DS +L+D+ K + S+I Sbjct: 513 AQAMYPGLHNYKQGTINKH-LELPAYEAHRACEDSAALGRIFGVMLNDLKEKQVAKVSEI 571 Query: 182 NFGFKTNEDRFFKE 195 N G N + K+ Sbjct: 572 NTGLGGNREVLKKK 585 >gi|170288240|ref|YP_001738478.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2] gi|170175743|gb|ACB08795.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2] Length = 186 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 17/179 (9%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67 V D ETTG D DRI+EI AV + N+ F + P R P + K+HGI++ Sbjct: 10 VVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNP--RIRIPALIQKVHGISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +++ P ++++ F D+ + + HNA FD+ F++ + P+ + IDTL Sbjct: 68 MDIEEAPDMDAVYNLFRDYV--KGTVLVFHNANFDLTFLDMMAKETGNFPIT-NPYIDTL 124 Query: 128 SIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQIN 182 ++ P S L LC+R GI + R H AL D+ + + V++K++ +G +++N Sbjct: 125 DLSEEIFGRPHS---LKWLCERLGIKTTIR--HRALPDALVTARVFVKLVEFLGENRVN 178 >gi|315648491|ref|ZP_07901590.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453] gi|315276185|gb|EFU39531.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453] Length = 246 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 10/174 (5%) Query: 5 NKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ +VFD+ETTG + ++ D I+ GAV ++ + + +G P +L Sbjct: 57 DELEVVVFDLETTGFNHQHGDEILSFGAVRVIGEQVIEQESFHMIVNSGSPVPPFITELT 116 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + P +F F + +AH A D GF+NA L + +K L R+ Sbjct: 117 GITQHMVDAAPPLMEGLHDFMAFVGGR--VLVAHAAAHDRGFLNAALWKTSKVRLT-HRL 173 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIK 173 +DT+ +A+R +P + L+ L + I + R H AL D+ + + + YIK Sbjct: 174 LDTMMLAQRLYPEQTDYSLDELLRNCSIPVEGR--HHALSDARMTARLWADYIK 225 >gi|227513350|ref|ZP_03943399.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus buchneri ATCC 11577] gi|227083223|gb|EEI18535.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus buchneri ATCC 11577] Length = 945 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 9/153 (5%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKL 62 +K V DIETTG D S ++RII+ L+ + K T+ + P ++ PE ++L Sbjct: 3 SKTTYAVVDIETTGTDMSVDNRIIQFSCT-LVAHGKIVETYVSDINP--QREVPERIIQL 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT E LK P+F + S+ + + ++AHN FD F+N E QR+ LD Sbjct: 60 TGITPERLKKAPTFDQVSSKLYKLLS--GTVFVAHNVNFDFPFLNGEFQRVGYPELD-IE 116 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154 IDT+++++ P+ S L L + I +H Sbjct: 117 AIDTVTLSQILLPTLSSYRLQDLSTYFNIIHNH 149 >gi|226360268|ref|YP_002778046.1| hypothetical protein ROP_08540 [Rhodococcus opacus B4] gi|226238753|dbj|BAH49101.1| putative DNA polymerase III epsilon subunit [Rhodococcus opacus B4] Length = 588 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 18/174 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG D I EIGAV++ L GR P +++ GIT Sbjct: 25 VVVDLETTGARPGEDAITEIGAVKIRGGEVIAE--MATLVDPGRSIPPHIVEITGITTAM 82 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P + F +F + A +AHNA FD GF+ A + P ++ T+ + Sbjct: 83 VIDAPRIERVLPAFLEF--ARGAVLVAHNAPFDTGFLKAAAAATDT-PWPKFTVLCTVKL 139 Query: 130 ARR-----KHPSSRNDLNSLCKR--YGITISHRSKHGALLDSHLLSDVYIKMMV 176 ARR + PS + L+SL + G T +HR AL D+ DV ++ Sbjct: 140 ARRVLTRDEAPSVK--LSSLARLLDVGTTPTHR----ALDDARATVDVLHALIA 187 >gi|171317951|ref|ZP_02907125.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] gi|171096851|gb|EDT41725.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] Length = 205 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL DR EI + L D +R +Q + GR+ + + L GIT+E Sbjct: 6 VLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLM-NAGRRIPSDVVALTGITNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P S + E F N +AHNA FD F AEL + T+ + Sbjct: 64 IASAPPVSQVMKEAAAFVG--NHPVVAHNAGFDKRFWQAELGMLGMAA--EHAFACTMLV 119 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR +P +R+ L+SL + + R+ H A++D+ + S ++ ++ Sbjct: 120 ARRIYPHARSHRLSSLADMLRLPQTGRA-HRAMVDAEIASHLWCRL 164 >gi|194017045|ref|ZP_03055658.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus pumilus ATCC 7061] gi|194011651|gb|EDW21220.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus pumilus ATCC 7061] Length = 930 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V DIETTG K D+II+I AV +++ + + ++ P G+ +L GI Sbjct: 5 RFVVVDIETTGNSPKKGDKIIQIAAV-VIENGQIVERYSKYVNP-GKAIPGFIEQLTGIQ 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D F I E +D Q A ++AHN FD+ F+N EL+ K+ LD IDT Sbjct: 63 QHMVDDAVFFEDIAQEVYDLI--QGAYFVAHNVHFDLNFLNDELKACGKNELD-VLAIDT 119 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + I+R +P L L + + + H H A D+ + + +++ ++ Sbjct: 120 VEISRILYPELEGYKLTELSEE--LMLPHDHPHRADSDAEVTAMLFLTLL 167 >gi|115359655|ref|YP_776793.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] gi|172064467|ref|YP_001812118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] gi|115284943|gb|ABI90459.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] gi|171996984|gb|ACB67902.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] Length = 205 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL DR EI + L D +R +Q + GR+ + + L GIT+E Sbjct: 6 VLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLM-NAGRRIPSDVVALTGITNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P S + E F N +AHNA FD F AEL + T+ + Sbjct: 64 IASAPPVSQVMKEAAAFVG--NHPVVAHNAGFDKRFWQAELGMLGMAA--EHAFACTMLV 119 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR +P +R+ L+SL + + R+ H A++D+ + S ++ ++ Sbjct: 120 ARRIYPHARSHRLSSLADMLRLPQTGRA-HRAMVDAEIASHLWCRL 164 >gi|227524493|ref|ZP_03954542.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus hilgardii ATCC 8290] gi|227088363|gb|EEI23675.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus hilgardii ATCC 8290] Length = 945 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 9/153 (5%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKL 62 +K V DIETTG D S ++RII+ L+ + K T+ + P ++ PE ++L Sbjct: 3 SKTTYAVVDIETTGTDMSVDNRIIQFSCT-LVAHGKIVETYVSDINP--QREVPERIIQL 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT E LK P+F + S+ + + ++AHN FD F+N E QR+ LD Sbjct: 60 TGITPERLKKAPTFDQVSSKLYKLLS--GTVFVAHNVNFDFPFLNGEFQRVGYPELD-IE 116 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154 IDT+++++ P+ S L L + I +H Sbjct: 117 AIDTVTLSQILLPTLSSYRLQDLSTYFNIIHNH 149 >gi|254469279|ref|ZP_05082684.1| exonuclease, DNA polymerase III, epsilon subunit family [Pseudovibrio sp. JE062] gi|211961114|gb|EEA96309.1| exonuclease, DNA polymerase III, epsilon subunit family [Pseudovibrio sp. JE062] Length = 471 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 11/170 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL D I++IGAV +++ T + P GR + +H ITD+ Sbjct: 280 VVFDTETTGLMPNKDEIVQIGAVRVVNRRIIPGETVDQLVNP-GRPIPAASTGVHRITDD 338 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDT 126 + + P + S+F F ++A +AHNA FD+ F LQR + I+DT Sbjct: 339 MVVNAPDPVTATSDFHVF--AKDAVIVAHNAPFDMAF----LQRYGHMSGHVWDHPILDT 392 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++ + + + L++LC R I I +H AL D+ + K++ Sbjct: 393 VLLSAVVFGAEQEHTLDALCARLDIEIPEALRHTALGDAQATAQALCKLL 442 >gi|110634574|ref|YP_674782.1| DNA polymerase III, epsilon subunit [Mesorhizobium sp. BNC1] gi|110285558|gb|ABG63617.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1] Length = 498 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 59/107 (55%), Gaps = 4/107 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + FD ETTGLD++ R++++ V + + + + +F+ + P G P+++++HGITD Sbjct: 15 AVAFDTETTGLDTRTARVVQVAGVAISRGAVRQDESFESLVHP-GMSIPPDSIRIHGITD 73 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 L++ P+F++++ F F + I + FD+ I E R Sbjct: 74 GMLREAPAFAAVWRSFEMFRGVR--PLIGYAVGFDLAIIEREAARAG 118 >gi|238917782|ref|YP_002931299.1| DNA polymerase [Eubacterium eligens ATCC 27750] gi|238873142|gb|ACR72852.1| DNA polymerase [Eubacterium eligens ATCC 27750] Length = 233 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 79/171 (46%), Gaps = 23/171 (13%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + DIETTGL+ DRIIE+G + D T + + + P G S +L GI + Sbjct: 4 RYVALDIETTGLNPAVDRIIEVGMARVEDGQITQK-YSTLVYP-GISVSERITELTGIHN 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGF-----INAELQRINKDPLDP 120 E L KP I E +F +W + HN FD F +N L IN D Sbjct: 62 EELTGKPRIEDIIGEITEFI----GDWPVLGHNVIFDFSFLKKAAVNNGLT-INDDG--- 113 Query: 121 SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLLS 168 IDTL +ARR P + L+ LC+ + I SHR+ A+ S L + Sbjct: 114 ---IDTLKLARRILPEVEHKSLSFLCQYFNIDPGRSHRAYDDAVSASLLYA 161 >gi|302525360|ref|ZP_07277702.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] gi|302434255|gb|EFL06071.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] Length = 572 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 12/184 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG D I EIGAV+ + + F + P G P+ ++L GIT Sbjct: 27 VVFDLETTGTKPGPDGITEIGAVK-VRAGQVLGEFATLVNP-GTPIPPQIVELTGITQAM 84 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P + F +F + A +AHN+ FD F+ A + P+ ++ T+ + Sbjct: 85 VYDAPRIERVLPAFLEFIS--GAVLVAHNSGFDTSFMKAACEGHGYVWPRPT-VVCTVKL 141 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFGFK 186 ARR P + R H AL D+ +DV ++ VG N G Sbjct: 142 ARRVIPREEARSYRLSSLSMLLGSRTRPTHRALDDARATTDVLHALLERVG----NLGVH 197 Query: 187 TNED 190 T E+ Sbjct: 198 TVEE 201 >gi|297621916|ref|YP_003710053.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044] gi|297377217|gb|ADI39047.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044] Length = 249 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 15/181 (8%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64 K + + D ETTGLD K DR+IE+ V K + F+ + P ++ PE ++ +H Sbjct: 6 KQQFVCLDCETTGLDPKEDRVIEVACVAFTLEEKLD-AFETLIDPE--RDIPETSIAIHH 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPSR 122 IT + + KP + + DF + H +FD+ I+ R I+K+ L + Sbjct: 63 ITQKMVAGKPKVKEVLPKVLDFVGSHI--IVGHGIQFDIEAISHSCDRAGISKN-LRDNP 119 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 IDTL +AR S N L L K + I I+HR A+ D + +V+ +++ G S Sbjct: 120 FIDTLRMARLYGESPINSLEHLRKHFNIESEIAHR----AMSDVMVNIEVFKQLLKGYSS 175 Query: 181 I 181 + Sbjct: 176 L 176 >gi|255030410|ref|ZP_05302361.1| DNA polymerase III PolC [Listeria monocytogenes LO28] Length = 459 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 5/119 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ + Sbjct: 346 VFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMV 403 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL + Sbjct: 404 KGSDPIDVVLKRFKEWSGDDI--LVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLEL 459 >gi|297566609|ref|YP_003685581.1| DNA polymerase III subunit epsilon [Meiothermus silvanus DSM 9946] gi|296851058|gb|ADH64073.1| DNA polymerase III, epsilon subunit [Meiothermus silvanus DSM 9946] Length = 252 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 14/180 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + + IIEI + L + + FQ F+ P G P +L GIT Sbjct: 80 VVLDLETTGLSALENEIIEIAFIRL--EGEKRQVFQRFVNP-GSPIPPFISRLTGITHRD 136 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P ++ E +++ I NA FD+GF+ R+ +D + +IDT++ Sbjct: 137 LEGAPDVYTVLEEALPLL--EDSVLIIQNAPFDLGFLRPRFLRLGYK-MD-NEVIDTVAW 192 Query: 130 ARRKHPS-SRNDLNSLCKRYGI-TISHRSKHGALLD---SHLLSDVYIKMMVGGSQINFG 184 ARR P S+ L+ L + + TI S+H AL D + L++ M+ G + G Sbjct: 193 ARRALPGLSKRGLDHLAWAFDLDTIV--SRHRALGDVEATLLVAKEMYYMLTAGKPLALG 250 >gi|330816132|ref|YP_004359837.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] gi|327368525|gb|AEA59881.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] Length = 203 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 13/168 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL ++ DR EI V L D +R +Q + GR+ + + L GIT++ Sbjct: 6 VLDFETTGLSPAQGDRATEIAIVLLRDGEIVDR-YQSLMN-AGRRIPSDVVALTGITNDM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDTL 127 + P +S+ E F N +AHNA FD F +EL + PS TL Sbjct: 64 IASAPPVASVMREAAAFVG--NHPVVAHNAGFDRRFWQSELGLLGV----PSAHEFACTL 117 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR +P + + L+SL + + + R+ H A++D+ + S ++ ++ Sbjct: 118 LVARRIYPQAPSHRLSSLVEMLSLPKTGRA-HRAMVDAEMASHLWCRL 164 >gi|225374652|ref|ZP_03751873.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM 16841] gi|225213511|gb|EEG95865.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM 16841] Length = 228 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 11/165 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL-HGITDE 68 ++FD+ETTG D +IEI AV++ K F + N ++ P A + + I+DE Sbjct: 18 VLFDLETTGTSCIYDEVIEISAVKVRS-GKVVEEFSQLV--NPKRPIPYAASMVNHISDE 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTL 127 + ++P F + EF F + + HN + FD+ F+ + +R+ + L + +DTL Sbjct: 75 MVANEPDFGQVLPEFLTFAGDDI--LVGHNIQTFDMKFLYRDCERLFQQKLT-NDYVDTL 131 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +A+ P R+ L+ L + YG IS R H AL D + V+ Sbjct: 132 RVAKLCFPEWRHRRLSDLAEHYG--ISTRGAHRALTDCKMNQQVF 174 >gi|157692739|ref|YP_001487201.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus pumilus SAFR-032] gi|157681497|gb|ABV62641.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032] Length = 930 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V DIETTG K D+II+I AV +++ + + ++ P G+ +L GI Sbjct: 5 RFVVVDIETTGNSPKKGDKIIQIAAV-VIENGQIVERYSKYVNP-GKPIPGFIEQLTGIQ 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D F I E +D Q A ++AHN FD+ F+N EL+ K+ LD IDT Sbjct: 63 QHMVDDAVFFEDIAQEVYDLI--QGAYFVAHNVHFDLNFLNDELKACGKNELD-VLAIDT 119 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + I+R +P L L + + + H H A D+ + + +++ ++ Sbjct: 120 VEISRILYPELEGYKLTELSEE--LMLPHDHPHRADSDAEVTAMLFLTLL 167 >gi|46445870|ref|YP_007235.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia amoebophila UWE25] gi|46399511|emb|CAF22960.1| putative DNA polymerase III epsilon chain [Candidatus Protochlamydia amoebophila UWE25] Length = 249 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 13/160 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-AL 60 I KNK I D ETTGLD + DRIIE+ AV D ++ + + P PE ++ Sbjct: 4 IEKNKF--ICIDCETTGLDPQQDRIIEV-AVMCFDGNQVYAQMESLINPEC--PIPETSI 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--L 118 +H IT + +KDKP+ + + + + ++ I H FD+ + +R + P + Sbjct: 59 AIHHITQDMVKDKPTINHVLPQILELISDHII--IGHGVGFDIEILAVAAER-HGIPCKI 115 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRS 156 +R +DTL +AR S N L L K + I + +HR+ Sbjct: 116 RKNRFLDTLRMARLYGESPVNSLEYLRKHFNIPLEGAHRA 155 >gi|146293210|ref|YP_001183634.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32] gi|145564900|gb|ABP75835.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32] Length = 212 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 7/168 (4%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL ++ R IEIGAV L++ + F + P G + S GI+++ Sbjct: 14 VVLDFETSGLSPNQGARAIEIGAV-LIENGVITQRFSELMDP-GFRISSFIEDYTGISNQ 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ + + F DF + + +AHNA FD F++AE I+ + + +L Sbjct: 72 MLRNAAPCHEVMARFADFIGDNH--LVAHNAAFDQRFLDAEFAHIHHE--YQGQFACSLL 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +ARR +P + N + RY ++ + H AL D+ + +++ M+ Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLA 175 >gi|304310986|ref|YP_003810584.1| hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1] gi|301796719|emb|CBL44931.1| Hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1] Length = 300 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 14/168 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ETTGL++ + I EIGAV+ + F++F P G +L GITDE Sbjct: 36 IAIDFETTGLEASSAAITEIGAVKFKISGEIVDQFEMFAYP-GTPIPVRIQELTGITDEM 94 Query: 70 LK--DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P F ++ +F D+ + N +IAHNA F+ F+ A ++ + P IDTL Sbjct: 95 VTGCEPPLF--VWKKFLDWADGANT-FIAHNAPFEARFVRALYEKEGEMP--NIYFIDTL 149 Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I+R + P S L +L K H AL D+ S +Y ++ Sbjct: 150 QISRNRLPEESSYSLKNLVK-----FKEGEPHRALADAKACSTLYCRL 192 >gi|296135545|ref|YP_003642787.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] gi|295795667|gb|ADG30457.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] Length = 469 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 9/159 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTG + DRI E+ AV ++ + + L P G++ P +L GI D Sbjct: 6 VLLDLETTGSNPVLDRITEV-AVMRVEQGEVVAKWSRLLNP-GQRIPPFIQQLTGIDDAM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+F + E + A +AHN +FD GF+ R D + + T+ + Sbjct: 64 VAGAPAFGEVLPELLAVLD--GAVLVAHNVRFDHGFLKQAAAREGVD--LRVKTLCTVRL 119 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R+ +P +R + L+++ +R+G+ + ++H A+ D LL Sbjct: 120 SRKLYPQARGHGLDAIMRRHGLHTT--ARHRAMGDVELL 156 >gi|300784117|ref|YP_003764408.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] gi|299793631|gb|ADJ44006.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] Length = 567 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 23/207 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG I EIGAV++ + F + P G P+ + L GIT Sbjct: 23 VVFDLETTGAPPGPSGITEIGAVKVRG-GEVLGEFATLVNP-GAPIPPQIVSLTGITQAM 80 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIIDTLS 128 + D P + F +F A +AHN+ FD + A + + P + ++ T+ Sbjct: 81 VYDAPPIEEVLPAFLEFIG--GAVLVAHNSGFDTSHMRAACE--GHGYVWPKATVVCTVR 136 Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +ARR P R +L +L +G R H AL D+ DV ++ VG N Sbjct: 137 LARRVVPRDEVGRYNLTALALLFGART--RPTHRALDDARATVDVLHGLLERVG----NL 190 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDK 210 G + +E +P +++ +R K Sbjct: 191 GVHS-----LEELMGYLPEVTVAQRAK 212 >gi|27366371|ref|NP_761899.1| ribonuclease T [Vibrio vulnificus CMCP6] gi|320156882|ref|YP_004189261.1| ribonuclease T [Vibrio vulnificus MO6-24/O] gi|29611837|sp|Q8D882|RNT_VIBVU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|27362572|gb|AAO11426.1| ribonuclease T [Vibrio vulnificus CMCP6] gi|319932194|gb|ADV87058.1| ribonuclease T [Vibrio vulnificus MO6-24/O] Length = 217 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P +G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFDGANLEKEALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ + E + EQ A +AHNA FD+ F+NA +R + Sbjct: 80 IRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSALYDTEKTAELFCG 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|329942731|ref|ZP_08291510.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|332287328|ref|YP_004422229.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|313847912|emb|CBY16907.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci RD1] gi|325506611|gb|ADZ18249.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|328814991|gb|EGF84980.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|328914571|gb|AEB55404.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC] Length = 228 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRIIEI A KT +F ++ P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIIEIAAYN----HKTKESFVTYVNPEIPIPE-EASKIHGITTST 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + F DF + A +AHN FD + E +R PL + ID+L Sbjct: 60 VISAPKFPEAYKHFCDFCGNE-AVLVAHNNDSFDFPLLEKECRRHALPPLS-LKTIDSLK 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A++ P +++L L + YG + H AL D L +V+ ++ Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHNVFSALI 163 >gi|288556130|ref|YP_003428065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus pseudofirmus OF4] gi|288547290|gb|ADC51173.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus pseudofirmus OF4] Length = 940 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D+ETTG +K DRII+IGAV +++ + F F+ P + P +L GI Sbjct: 4 RFIVVDVETTGHSVAKGDRIIQIGAV-VIENGEIIERFASFVNPE-VEIPPFIEELTGIN 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ P+F + E F +N ++AHN FD+ F+ + + I + + DT Sbjct: 62 QAMVEHAPTFKELAVELLPLF--ENVGFVAHNVPFDLSFLKNQFELIG-EKFPKMKCYDT 118 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++R P + L L + + +SH H A D+ + +++++ ++ Sbjct: 119 VELSRMLLPKEESYKLGHLA--FSLGLSHDRPHQADSDAEVTAEIFLYLL 166 >gi|323342398|ref|ZP_08082630.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463510|gb|EFY08704.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 200 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 26/174 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS--PEALKLHGITDE 68 V D+ETTG +K + I E+ A++ +Y + + F + P+ NS P ++L GIT+E Sbjct: 17 VIDLETTGRSNKFEDITELSAIKYRNYKQVD-AFSTLVKPD---NSILPFVVELTGITEE 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQ----RINKDPLDPSRI 123 + D P + +F DF + HN FD G + +A L R++ D Sbjct: 73 MVSDAPKIDQVIKQFVDFIGTD--VILGHNVMFDYGLVYDAYLATVGLRMHND------Y 124 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKM 174 +DTL ++R + S+N L +LC + + + HR L ++VYIKM Sbjct: 125 VDTLRVSRLLNKDSKNHKLETLCAYFDVERLVGHRGSEDCLQT----AEVYIKM 174 >gi|197337514|ref|YP_002157585.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11] gi|197314766|gb|ACH64215.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11] Length = 212 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 13/170 (7%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL ++ DR IEIGAV+L + +R FQ + P G + S GI++ Sbjct: 16 VVLDFETTGLSPNQGDRAIEIGAVKLENGVVVDR-FQGLMNP-GFRVSSFIENYTGISNR 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D S + +EF +F Q +AHNA FD F++ EL I ++ D L Sbjct: 74 MLADAASCDEVMNEFANFI--QGCNLVAHNASFDKRFLDGELALIQRE-YDGDFACSLLV 130 Query: 129 IARRKHPSSRNDLNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMM 175 R +S + L L + I + HR AL D+ + + +++ ++ Sbjct: 131 SRRLTQEASSHKLGDLVAYHQIENDGVFHR----ALADAEVTASLWLVLL 176 >gi|148269564|ref|YP_001244024.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1] gi|147735108|gb|ABQ46448.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1] Length = 186 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 17/179 (9%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67 V D ETTG D DRI+EI AV + N+ F + P R P + K+HGI++ Sbjct: 10 VVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNP--RIRIPALVQKVHGISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +++ P ++++ F D+ + + HNA FD+ F++ + P+ + IDTL Sbjct: 68 MDIEEAPDMDAVYNLFRDYV--KGTVLVFHNANFDLTFLDMMAKETGNFPIT-NPYIDTL 124 Query: 128 SIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQIN 182 ++ P S L LC+R GI + R H AL D+ + + V++K++ +G +++N Sbjct: 125 DLSEEIFGRPHS---LKWLCERLGIKTTIR--HRALPDALVTARVFVKLVEFLGENRVN 178 >gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] Length = 417 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 9/166 (5%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL +DR++E+ V L ++ + P GR P+ ++H I Sbjct: 8 VIDFETTGLFAGGHDRVVEVAVVHLDAQGTVEGRWETLVNP-GRDLGPQ--RIHQIRASD 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+F I + D + +AHNA FD+ F+ AEL+R + T+ + Sbjct: 65 IVDAPAFEHIAGQLVDLL--EGRVLVAHNASFDLKFLVAELERTAAWMSTDFVSLCTMQL 122 Query: 130 ARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIK 173 AR P + L C I + +HR+ A + LL+ YI+ Sbjct: 123 AREYLPGAGRALADCCAALDIQLDDAHRASADAFATAQLLA-AYIE 167 >gi|309811312|ref|ZP_07705099.1| exonuclease [Dermacoccus sp. Ellin185] gi|308434619|gb|EFP58464.1| exonuclease [Dermacoccus sp. Ellin185] Length = 221 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 7/150 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+GLD R+IE+ +L R + + G + +HG++D + Sbjct: 17 VVDVETSGLDPLRHRVIEVAVTQLTPSGGLEREWSSLVRARGGTGP---VHIHGLSDYDV 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P F+ + E + + + +AHNA FD F+ AE +R ++ L S + T +A Sbjct: 74 RDAPGFADLVDELSELLDGRIL--VAHNAAFDWAFLAAEARRAGRE-LPVSERLCTWHLA 130 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHG 159 R + P+ L +L + + I + + + G Sbjct: 131 RGLELPTDNLRLGTLAEYWSIPVENAHRAG 160 >gi|322380763|ref|ZP_08054869.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5] gi|321146767|gb|EFX41561.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5] Length = 219 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 13/157 (8%) Query: 13 DIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 DIETTG +N +IEI A+ + + R+F + + + P+ +L G++ Sbjct: 40 DIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLI--HCLEVPPKITELTGLS 97 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + LK+ P ++ +F F Q+ ++AHNA FD FI+A ++ L +++ T Sbjct: 98 TDDLKEAPPLEAVLQDFKLFI--QDHIFVAHNADFDFHFISACCAQVLDSALSNAKLC-T 154 Query: 127 LSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGAL 161 L++AR+ PS R+ L L G I ISHR+ AL Sbjct: 155 LNLARKCIPSPRHGLQFLNTFLGLDIPISHRAYADAL 191 >gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM 43183] gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM 43183] Length = 328 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 9/161 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+GL R++ + + L F L P P + +HG+T E L Sbjct: 18 VVDVETSGLRPDRHRVLSLAVLTLRPDGHLVEEFSTLLDPG---CDPGPVHIHGLTPERL 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P+F + + + + +AHNA FD F+ E R L + + TL++ Sbjct: 75 RGAPTFDRVAERVAELLSGRV--MVAHNAAFDYAFLAHEFGRAGLH-LPVEQRLCTLALG 131 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 RR P+ L++L YG+ HR+ H AL D+ +L+ V Sbjct: 132 RRIGLPTPDLRLSTLAAHYGVP-QHRA-HDALDDARVLAGV 170 >gi|325681442|ref|ZP_08160968.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus albus 8] gi|324106932|gb|EGC01222.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus albus 8] Length = 1498 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 8/166 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTG + ++D+IIEIGAV+L ++ F + + P G + L ITD+ Sbjct: 448 ICFDLETTGTNPRDDKIIEIGAVKLRGLEIVDK-FDMLVDP-GCPLTEFISNLTNITDDM 505 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LK + + F +F E+ +AHNA FD GFI +R S IDT+ + Sbjct: 506 LKGQSDIKTALEAFVEFCGEKPC-LVAHNAPFDTGFIKHACEREGIKFEFSS--IDTVPM 562 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ P ++ LN + + +G H D+ +L ++I++ Sbjct: 563 SQLMLPQLEKHKLNYVAEHFG--YGDFQHHRGCDDAEVLGKIFIEL 606 >gi|182419729|ref|ZP_02950970.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237665534|ref|ZP_04525522.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376466|gb|EDT74047.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237658481|gb|EEP56033.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1472 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 81/149 (54%), Gaps = 9/149 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG K ++I EIG +++ D K F F+ P + P +++ ITD+ + Sbjct: 448 VLDLETTGFSPKLEKITEIGIMKVKD-GKVIDKFSTFVNPE-KPIPPRVVEVTNITDDMV 505 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ + +F + +F + + +AHNA+FD+GF+ + + D D + +DTLS+A Sbjct: 506 RNAETIDKVFPKMLEFI--EGSILVAHNAEFDIGFLRHYAKVLGHD-FDFTY-LDTLSLA 561 Query: 131 RRKHPSSRN-DLNSLCKRYGI--TISHRS 156 + P ++ L + K GI ++HR+ Sbjct: 562 QDLFPQYKSYKLGRIAKNLGIKVEVAHRA 590 >gi|311740325|ref|ZP_07714155.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC 33035] gi|311304608|gb|EFQ80681.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC 33035] Length = 229 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 11/157 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKLHGITDE 68 V D ETTG + + DRIIE+ + + + + P+G+ KNS +HGIT+ Sbjct: 33 VIDTETTGFNKRYDRIIELAVARFDESFRLVDQWHTLINPDGKQIKNS----HIHGITNA 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTL 127 + P+F +++EF + +AHNA FD I AE +RI D D +DT+ Sbjct: 89 DVAHAPTFPEVYTEFAARVD--GMVLMAHNAPFDSKMILAEAERITPDGEDVYFPFVDTI 146 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 ++A++ L++L G + + H A+ D+ Sbjct: 147 ALAKQMVSLRSYKLSALLDHVG--LHNPQSHAAIADA 181 >gi|37679366|ref|NP_933975.1| ribonuclease T [Vibrio vulnificus YJ016] gi|54036328|sp|Q7MM91|RNT_VIBVY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|37198109|dbj|BAC93946.1| ribonuclease T [Vibrio vulnificus YJ016] Length = 217 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G EAL+ +G Sbjct: 20 VVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKEALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ + E + EQ A +AHNA FD+ F+NA +R + Sbjct: 80 IRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDLSFVNAANERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSALYDTEKTAELFCG 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|212638970|ref|YP_002315490.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Anoxybacillus flavithermus WK1] gi|212560450|gb|ACJ33505.1| DNA polymerase III, epsilon subunit and Rad3-related DNA helicase [Anoxybacillus flavithermus WK1] Length = 880 Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 17/163 (10%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R +V DIETTG K DRII+IG V +++ K + F F+ P ++ P ++ L GI Sbjct: 4 RFVVVDIETTGNAPKKEDRIIQIGFV-VIEGDKVKKRFSTFVQP--ERDIPLFIQQLTGI 60 Query: 66 TDEFLKDKPSF---SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + D P F +++ E W + A ++AHN +FD F+ E R P R Sbjct: 61 DHAMVHDAPPFQHIAAMLVEQW-----EGAYFVAHNVQFDWAFLQEEFIRSGIQP-PTCR 114 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 ++DT+ +AR P+ S LN L + ++ +H H A D+ Sbjct: 115 LLDTVELARFLMPTQSSYKLNHLAE--ALSFAHDRPHQADYDA 155 >gi|192362510|ref|YP_001983050.1| ribonuclease T [Cellvibrio japonicus Ueda107] gi|190688675|gb|ACE86353.1| ribonuclease T [Cellvibrio japonicus Ueda107] Length = 223 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 26/202 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G +++ D ++EI AV + +D + + TF + P G AL G Sbjct: 24 VIVDVETGGFNAQTDALLEIAAVTIRMDEDGFLHRHETFAFQVEPFEGANIEQAALDFTG 83 Query: 65 ITDEFLKDKPS---------FSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR 112 I D P + +FS E A + HNA FD+GF+NA ++R Sbjct: 84 ID----PDSPDRIAEPELMVMTDLFSAVRRAVKESGCTRAVMVGHNAHFDLGFVNAAVER 139 Query: 113 IN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 N ++P P + DT ++A + L CK GI S+ + H A D+ +D+ Sbjct: 140 CNIKRNPFHPFSVFDTATLAGLAF--GQTVLAKACKTAGIEFSNSAAHCAAYDAEKTADL 197 Query: 171 YIKMMVGGSQINFGFKTNEDRF 192 + ++V Q G+ ++D Sbjct: 198 FC-LIVNRWQTLGGWCASDDEL 218 >gi|325001618|ref|ZP_08122730.1| hypothetical protein PseP1_22781 [Pseudonocardia sp. P1] Length = 403 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 16/186 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG + D I E+GAV + + P R + + +L GIT+ Sbjct: 26 CVVDLETTGGSHRADAITEVGAVSVRGGESIGE-LSTLVDPGTRVPA-DVTRLTGITNGM 83 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P ++ D + + +AHNA FD GF+ A +R ++ P ++ T + Sbjct: 84 LAGAPPLGAVLPPVLDLL--RGSVLVAHNAPFDTGFLRAACER-HERPWPSPPVLCTARL 140 Query: 130 ARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFG 184 AR P S L +L +G + H AL D+ +V ++ +G N G Sbjct: 141 ARAVLPRSECPSVRLGALAAHFGCRTT--PDHRALTDARATVEVLHHLLERIG----NLG 194 Query: 185 FKTNED 190 ++ E+ Sbjct: 195 VQSLEE 200 >gi|332995649|gb|AEF05704.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2] Length = 710 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 4/104 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTG ++ +RI EIG V+++ + T+Q + P R+ +L GI+D+ Sbjct: 544 VVVDIETTGGNNSYNRITEIGMVKIVA-GEVVDTYQTLINPQ-RRIPATITRLTGISDDM 601 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 + D P F + F +E A ++AHN FD GFI E R+ Sbjct: 602 VADAPLFVEVAERIASFTDE--AVFVAHNVNFDYGFIKQEFARL 643 >gi|224373045|ref|YP_002607417.1| exonuclease [Nautilia profundicola AmH] gi|223588855|gb|ACM92591.1| exonuclease [Nautilia profundicola AmH] Length = 203 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 21/176 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-----FQVFLCPNGRKNSPEALKLHG 64 +V D ETTGLD K D II IGAV K NR F +F+ P+ ++ S E++K+H Sbjct: 32 VVVDTETTGLDRKKDEIISIGAV----IVKNNRVLLSRKFHIFVKPS-KELSIESIKIHK 86 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT + LK+ + F +F +N + + +FDV +N +R L P+R I Sbjct: 87 ITPDMLKNALEPETAIKMFLNFI--KNRPLVGYYLEFDVAMLNKLTKRYLGIKL-PNRQI 143 Query: 125 DTLSIARRKH----PSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++ K P DL +S+ K + I KH AL D+ + + +YIK+ Sbjct: 144 EVSAVYYDKKIGLIPQKHIDLRFDSIMKDLNLPII--GKHDALNDAIMTALMYIKL 197 >gi|114773251|ref|ZP_01450486.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255] gi|114546370|gb|EAU49279.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255] Length = 313 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 7/161 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTG + + +I EIG V++++ + +Q L P R+ L GI D Sbjct: 143 VVVDIETTGGRATSHKITEIGMVKVINGQVVDE-YQTLLNPK-RRIPRNITALTGIDDVM 200 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P F+ + E F + ++AHN FD GFI E R+ + +++ + Sbjct: 201 VSNAPIFAEVADEVAQF--TKGCVFVAHNVNFDYGFIKQEFTRLERH-FSRAKLCTVREM 257 Query: 130 ARRKHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLS 168 + + + L +L + +GI +S HR+ A+ + LL+ Sbjct: 258 RKARPGLASYSLANLTRHFGIEMSRHHRAMSDAIAANELLT 298 >gi|193216948|ref|YP_002000190.1| DNA polymerase III PolC [Mycoplasma arthritidis 158L3-1] gi|193002271|gb|ACF07486.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1] Length = 1438 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 10/170 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + + IIE GA +++ + Q F+ P + P ++ ITD Sbjct: 406 VVFDLETTGLSPRFNEIIEFGA-SIIENGIIKESHQFFIKPT-KPIPPSITEITKITDNT 463 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTL 127 + + S + +D +N +AHNAKFD IN + K LD S+I ID+L Sbjct: 464 VANGYSQEEGVRKIYDIL--KNRICVAHNAKFD---INVCKENFLKYGLDNSKIIGIDSL 518 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +IAR +++ L + K++ + + H A D+++L++V+I M++ Sbjct: 519 AIARFLIDEAKSYRLEIVAKKFNVYYARNEAHRADYDANVLANVWILMIL 568 >gi|322378997|ref|ZP_08053400.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1] gi|321148489|gb|EFX42986.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1] Length = 219 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 13/157 (8%) Query: 13 DIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 DIETTG +N +IEI A+ + + R+F + + + P+ +L G++ Sbjct: 40 DIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLI--HCLEVPPKITELTGLS 97 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + LK+ P ++ +F F Q+ ++AHNA FD FI+A ++ L +++ T Sbjct: 98 TDDLKEAPPLEAVLQDFKLFI--QDHIFVAHNADFDFHFISACCVQVLDSALSNAKLC-T 154 Query: 127 LSIARRKHPSSRNDLNSLCKRYG--ITISHRSKHGAL 161 L++AR+ PS R+ L L G I ISHR+ AL Sbjct: 155 LNLARKCIPSPRHGLQFLNTFLGLDIPISHRAYADAL 191 >gi|291287762|ref|YP_003504578.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] gi|290884922|gb|ADD68622.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] Length = 205 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 24/176 (13%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVEL-----LDYSKTNRTFQVFLCPNGRKN 55 I +++ VFD ETTG+ K R++EIGAV++ LD + T N + Sbjct: 4 IPFDQLTFTVFDTETTGMSPDKGARLLEIGAVKVKPGLVLDLQDSFCTLI-----NPKAP 58 Query: 56 SP-EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI---NAELQ 111 P A +HGI+ + DKP + F+ F +N AHNA+FD F+ +AE Sbjct: 59 IPYNAYSVHGISTAMVADKPEIKDVLPGFFSF--TENTIIAAHNARFDCSFVSHHSAECC 116 Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYG--ITISHRSKHGALLDS 164 +N P+ ++I+DT+ +A+ H ++ L +L + I + +H AL D+ Sbjct: 117 IVN--PM--TKIVDTVKLAKSAHSGLKSYSLGNLIHYFSMDIPLPDTYRHRALYDA 168 >gi|11498577|ref|NP_069805.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus fulgidus DSM 4304] gi|2649627|gb|AAB90271.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus fulgidus DSM 4304] Length = 205 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 16/192 (8%) Query: 4 KNKMRKIVF---DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEA 59 + +RK+ F D+ETTGL+ K D II IGAV ++ ++ L P K+ E+ Sbjct: 2 EGSLRKVQFLSIDLETTGLNQKKDEIIAIGAVPIIGTRILAGESYYRLLRPEKFKH--ES 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INK 115 +K HG+ LK FS I E D + + + + D GF+ L+R + Sbjct: 60 MKFHGLDPARLKTAHDFSEIAEEVADLL--RGKVLVGYAIELDYGFLKRALKREGYKVEN 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +D + + P L++L K+Y + +S+R H AL D+ + + ++ + Sbjct: 118 KRIDVIDFEKAVCYILGERPVGEMTLDNLAKKYRVEVSYR--HNALADAFITAQIFQVQL 175 Query: 176 VGGSQINFGFKT 187 + + +G KT Sbjct: 176 L--KILKYGIKT 185 >gi|256847331|ref|ZP_05552777.1| helicase [Lactobacillus coleohominis 101-4-CHN] gi|256715995|gb|EEU30970.1| helicase [Lactobacillus coleohominis 101-4-CHN] Length = 950 Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 24/185 (12%) Query: 4 KNKMRK-----IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 K K RK V D+ETTG K+ DRII++G V + D N+ F+ + P K Sbjct: 6 KTKQRKRGPIYSVVDLETTGTSVKSGDRIIQVGLVMIQDGKIINQ-FETRINPL-MKIPR 63 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 +L GITD+ + P I + ++AHN FD FIN EL R+ +DP Sbjct: 64 SVQQLTGITDKDVSKAPLLEDIAPTLESLLS--GTIFVAHNVNFDFPFINHELTRVGRDP 121 Query: 118 LDPSRIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSH----LLSD 169 L S IDT+++++ P++++ DL S + I H H A+ D+ LL D Sbjct: 122 LRIS-AIDTVTLSQILMPTAKSYRLRDLTSY-----LHIEHDHPHSAVSDAEATGVLLKD 175 Query: 170 VYIKM 174 + K+ Sbjct: 176 LLAKL 180 >gi|212715911|ref|ZP_03324039.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM 16992] gi|212661278|gb|EEB21853.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM 16992] Length = 196 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 11/160 (6%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67 IV D ETTGL K R+IEIGAV++ + + Q+ N ++ P + L GI D Sbjct: 23 IVIDTETTGLSVRKGARLIEIGAVKIHNDELVDEFDQLI---NPFEHIPSRITGLTGIDD 79 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRINKDPLDPSRIID 125 L KP + EF + ++ A +AHNA FD+ F++ +L ++D +D Sbjct: 80 GMLLGKPDVREVMDEFARWCSD-TAVVMAHNASFDMSFLDNAVQLAYADRDARFAHHFVD 138 Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164 TL ++RR HP R + +++L Y I+ +H AL D+ Sbjct: 139 TLDLSRRLHPEKRTHKVSTLIVDY--HIADMEEHRALSDA 176 >gi|126664190|ref|ZP_01735182.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] gi|126623722|gb|EAZ94418.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] Length = 202 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 7/153 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHG 64 K R +VFD ETTGLD K+DRI+ IGAV + + F +VFL + K E++ +HG Sbjct: 31 KKRYVVFDCETTGLDYKSDRILSIGAVAIENNQIIVGDFMEVFLLQDVFK--AESVPIHG 88 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I E ++K + F +F ++A + H+ FD+ IN L R+ L + Sbjct: 89 ILKEGKEEKIVEAEAIIRFLEFI--KDATLVGHHVDFDIEMINQGLARLEVGKLKNQAMD 146 Query: 125 DTLSIARRKH--PSSRNDLNSLCKRYGITISHR 155 + + K+ + L+ LC Y I S R Sbjct: 147 TDVMYQKLKYLPQEQHSSLDELCDIYKIRKSDR 179 >gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407] gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407] gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 324 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 20 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 77 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 78 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPTNKVIDTVFL 134 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H AL D + VY K Sbjct: 135 AKKYMKH-APNHKLETLKRMLGIRL---SSHNALDDCITCAAVYQK 176 >gi|322381856|ref|ZP_08055810.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit epsilon-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154244|gb|EFX46566.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit epsilon-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 957 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 8/151 (5%) Query: 26 IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85 II++G V + ++ T+R + + P R S L GITDE +++ PS + ++ + Sbjct: 24 IIQVGLVIIDEFDITDR-YTSLVNPGVRIPS-SITSLTGITDEMVENAPSVEKVMADLYP 81 Query: 86 FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSL 144 + + +AH+A FD F+ L + P R++DT+ R PS + L + Sbjct: 82 LLS--DCVLVAHHASFDHAFLQRSLTKAGYPPFT-GRVLDTIDALRVAFPSLGSFQLGHV 138 Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 C +G I H + H A D+ + ++++I++M Sbjct: 139 CSLFG--IEHENPHQANCDAQVTAELWIRIM 167 >gi|325128513|gb|EGC51390.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568] Length = 470 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+IE+ V+ + R + N +K P+ + L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVIEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R+ P+ + Sbjct: 84 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar chinensis CT-43] Length = 315 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPTNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H AL D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNALDDCITCAAVYQK 167 >gi|218295556|ref|ZP_03496369.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23] gi|218244188|gb|EED10714.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23] Length = 247 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 13/174 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + IIE+ V L + FQ P R SP +L GIT E Sbjct: 74 VVLDLETTGLAPGLNEIIEVALVRLEGERRV--AFQSLARPR-RPPSPFIQRLTGITLEE 130 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P + + + A + NA FD+GF+ L + + +P ++D++ + Sbjct: 131 LEKAPPLEEVLFRAYPLL--EGATLVIQNASFDLGFLRPALGELGLELENP--VVDSIRL 186 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD-SHLLSDVY--IKMMVGGS 179 ++R R L++L + + ++ R++H ALLD L+ VY M+ GS Sbjct: 187 SKRAMRGLRRYGLDALSEV--LELAPRAEHRALLDVERTLAVVYEVYYMLTSGS 238 >gi|319426278|gb|ADV54352.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200] Length = 212 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 7/168 (4%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL ++ R IEIGAV L++ + F + P G + S GI+++ Sbjct: 14 VVLDFETSGLSPNQGARAIEIGAV-LIENGVITQRFSELMDP-GFRISTFIEDYTGISNQ 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ + + F DF + + +AHNA FD F++AE I+ + +L Sbjct: 72 MLRNAAPCHEVMARFADFIGDNH--LVAHNAAFDQRFLDAEFAHIHHQ--YQGQFACSLL 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +ARR +P + N + RY ++ + H AL D+ + +++ M+ Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLA 175 >gi|171056716|ref|YP_001789065.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6] gi|170774161|gb|ACB32300.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6] Length = 210 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 9/162 (5%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ S+ R EIGAV L+ + +Q + +G P +L GI++ Sbjct: 6 VIDFETTGMTPSQGARATEIGAV-LVRGGEIVGQYQSLMY-SGVHIPPFIEQLTGISNAM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+D P + E F + +AHNA FD GF AE +R +P T+ + Sbjct: 64 LRDAPPAEQVMREVAAF--TRGCPMVAHNAAFDRGFWLAERERAGCEPDLAQEFACTVLL 121 Query: 130 ARRKHPSSRN-DLNSLCKRYGIT---ISHRSKHGALLDSHLL 167 +RR + + N L +L +G+ +HR+ AL +HLL Sbjct: 122 SRRLNTEAPNHKLGTLASWFGLPNNGRAHRALADALTTAHLL 163 >gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581] gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae] Length = 1455 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 9/171 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGIT 66 R +VFD+ETTGL + IIE GAV + D +T + Q F+ ++ P E K+ IT Sbjct: 400 RYVVFDLETTGLSPVYNEIIEFGAVVIQDGIQT-ESHQFFV--KAKEPIPTEITKITNIT 456 Query: 67 DEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 E + ++ + F +++ +AHNAKFD F+ AEL + IID Sbjct: 457 QEMVDEQGIEATEAFYRISKII--KDSILVAHNAKFDFNFL-AELFKKEASMTIDQPIID 513 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL ++R +PS ++ L ++ K G+ H A D+ +LS V++ + Sbjct: 514 TLQVSRFLNPSQKSHSLKNVSKLIGLYYDETVAHRADYDAEILSKVWLNFL 564 >gi|114565211|ref|YP_752725.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] gi|114336504|gb|ABI73886.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] Length = 204 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 5/101 (4%) Query: 10 IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL N DR IEIGAV+L++ + TFQ + P GR+ + + GI+++ Sbjct: 8 VVLDFETTGLSPDNGDRAIEIGAVKLVN-GQIVDTFQELINP-GRRVNSFIEQYTGISND 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 LK P+ + +F F + N +AHNA FD F++AE Sbjct: 66 MLKHAPTSKQVMGQFAKFIDGFN--LVAHNASFDKKFLDAE 104 >gi|310830408|ref|YP_003965509.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2] gi|309249875|gb|ADO59441.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2] Length = 311 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG +K RIIE+ V++ + K F + P +K P+ +L GIT+E Sbjct: 27 VVADIETTGFSPAKGGRIIEVAGVKI-ENGKIVDEFNQLINPE-QKIYPKITELTGITNE 84 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDPSRIIDTL 127 + KP F + EF+ F + A ++AHN FD ++ +++ + S I T Sbjct: 85 MVSGKPVFGQVLPEFYRFIGD--AVFVAHNKSFDWDRYLLHYFEKVGIIADNAS--ICTK 140 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ P+ L +CK G+ I++ H AL DS L+ V+++ + Sbjct: 141 ILAKMYRPNLPAYGLEDICKDAGVQITNH--HRALDDSIALAHVFLRYL 187 >gi|188586746|ref|YP_001918291.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351433|gb|ACB85703.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 864 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 18/165 (10%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP--EALK 61 +NK+ +VFD+ETTGLD+ D IIE+ A++ + F +L R + P E+ + Sbjct: 497 QNKL--VVFDVETTGLDTTKDEIIELAALKAGKDGVVDE-FHEYL----RNSKPVGESFQ 549 Query: 62 LHGITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGI+D+ L + KP S+ S F +F ++ + + HN +D+ + + +++ L+ Sbjct: 550 VHGISDQVLLEQGKPPEKSLAS-FTNFIDD--CDLVGHNVNYDITMVENQCKKLLNQDLE 606 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163 DT+ I+RR P + +L SLC+ + IS + H A+ D Sbjct: 607 LHG-YDTVDISRRYFPRLEKYNLESLCE--DLQISSKPTHRAMDD 648 >gi|167462331|ref|ZP_02327420.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Paenibacillus larvae subsp. larvae BRL-230010] Length = 816 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 8/151 (5%) Query: 26 IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85 II++G V + ++ T+R + + P R S L GITDE +++ PS + ++ + Sbjct: 24 IIQVGLVIIDEFDITDR-YTSLVNPGVRIPS-SITSLTGITDEMVENAPSVEKVMADLYP 81 Query: 86 FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSL 144 + + +AH+A FD F+ L + P R++DT+ R PS + L + Sbjct: 82 LLS--DCVLVAHHASFDHAFLQRSLTKAGYPPF-TGRVLDTIDALRVAFPSLGSFQLGHV 138 Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 C +G I H + H A D+ + ++++I++M Sbjct: 139 CSLFG--IEHENPHQANCDAQVTAELWIRIM 167 >gi|152968358|ref|YP_001364142.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans SRS30216] gi|151362875|gb|ABS05878.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans SRS30216] Length = 224 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 8/111 (7%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60 R+ + R V D+ETTGL + DR+++I AV LLD T R++ + P+ P Sbjct: 20 RRYRHRYAVLDVETTGLRPETGDRVVQI-AVTLLDARGTVERSWSSLVDPH---RDPGPT 75 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 +HGIT E L P+F+ + + + ++AHNA+FD F++AE++ Sbjct: 76 HVHGITAERLAGAPTFAQLAPTVAGLLDGRV--FVAHNARFDWKFVSAEMR 124 >gi|329847967|ref|ZP_08262995.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Asticcacaulis biprosthecum C19] gi|328843030|gb|EGF92599.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Asticcacaulis biprosthecum C19] Length = 708 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 7/144 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + NDR+ EI AV++ K + + P R+ +L GIT+E Sbjct: 544 VVVDVETTGGRAVNDRVTEIAAVKVRG-GKIIAEWSSLINPE-RRIPGYITQLTGITNEM 601 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F+ I + F + A ++AHN FD FI +E +R+ + P + T + Sbjct: 602 VAGAPKFAEIADDLAAFLS--GAVFVAHNVNFDHSFIASEYRRLERRFHAPK--LCTCAG 657 Query: 130 ARRKHPSSRN-DLNSLCKRYGITI 152 R+ +P + L L K YGI + Sbjct: 658 MRKYYPGHGSYGLGPLSKEYGIRL 681 >gi|268317061|ref|YP_003290780.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252] gi|262334595|gb|ACY48392.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252] Length = 616 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 10/157 (6%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGL + D II IGAV ++ + TF + P R S +++++HGI Sbjct: 424 VFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNPR-RPISLDSVRVHGIQPV 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+DKP + F+ F ++ + HN FD+ FI + + + P ++DT+ Sbjct: 483 LLQDKPPIEEVLPRFYRF--ARDTVLVGHNVAFDLKFIRQKEKALGLRFDQP--VLDTML 538 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 +A P ++ L+ L +GI R H AL D+ Sbjct: 539 LAAVVDPERQHYGLDELAAAFGIEPVGR--HSALGDA 573 >gi|310659214|ref|YP_003936935.1| helicase, uvrd/rep/exonuclease family protein [Clostridium sticklandii DSM 519] gi|308825992|emb|CBH22030.1| putative Helicase, UvrD/REP/exonuclease family protein [Clostridium sticklandii] Length = 828 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 16/192 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGLD K D+II+I A++ + + F+ F+ + + ++ K+H I+DEF Sbjct: 469 VVFDVETTGLDIKKDKIIQIAALK-GGKNGVLQKFERFIKID--YSVGDSFKIHNISDEF 525 Query: 70 L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRIIDT 126 L ++ S +F F Q++ + HN +D+ + ++ I N D L S+I DT Sbjct: 526 LFQNGVDAKSAIDDFLLF--SQDSVIVGHNVSYDINILKENMKAIDLNIDKL-SSKIFDT 582 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS----HLLSDVYIKMMVGGSQI 181 L + R+ +P + L +L K + +++H H A+ D +L V K++ ++ Sbjct: 583 LILTRKTYPGFFSYKLGNLFKEF--SLNHTPTHNAMDDVICTLEVLEKVVAKLLEKQAKR 640 Query: 182 NFGFKTNEDRFF 193 F +D F+ Sbjct: 641 QAVFTKYQDYFY 652 >gi|305666543|ref|YP_003862830.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88708810|gb|EAR01045.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170] Length = 222 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 8/174 (4%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63 +++R IVFD ETTGLD NDRI+ IGA+ + + +++L K E++++H Sbjct: 30 DEVRFIVFDTETTGLDIVNDRILSIGAISVFSGKLDIGDSLEIYLKQKIFK--AESVEIH 87 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI E +K + F + +N +AH+A FD+ INA L+R+ L +++ Sbjct: 88 GILKEGSIEKHTEEEAIISFLKYI--ENGILVAHHAAFDIAMINAGLRRMGLPKL-KNKV 144 Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175 +DT + ++ +N + SL GI + +H + D+ L + +K++ Sbjct: 145 LDTGVLFKKTTLCEDKNKIYSLDYLSGIFKFRNHDRHTSSGDAFLTGMILLKIL 198 >gi|329940244|ref|ZP_08289526.1| DNA exonuclease [Streptomyces griseoaurantiacus M045] gi|329301070|gb|EGG44966.1| DNA exonuclease [Streptomyces griseoaurantiacus M045] Length = 251 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 23/161 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68 + FD+ETTG D RI+ +E+ D + +L G + +A+ +HGIT+E Sbjct: 9 VGFDLETTGTDPYEARIVTGAVIEVRDGEPLG--HRQWLADPGVEIPEDAIAVHGITNER 66 Query: 69 -FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN------- 114 + P S + + + +W +A+NA FD+ + AEL+R Sbjct: 67 ATAEGTPPDRVAESIAEVLTGYW----RAGVPVVAYNAAFDLTLLGAELRRHGLPSLRER 122 Query: 115 KDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITIS 153 D DP+ ++D +I RR ++ + +L ++C YG+ + Sbjct: 123 LDGADPAPVVDPYTIDRRVDRYRRGKRNLEAVCGEYGVVLG 163 >gi|259503450|ref|ZP_05746352.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041] gi|259168528|gb|EEW53023.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041] Length = 929 Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 17/169 (10%) Query: 13 DIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFL 70 D+ETTG + DRII++G V + D NR F+ + P R+ P A+ +L GI + + Sbjct: 3 DLETTGTSVNHGDRIIQVGCVLVQDGQVINR-FETKINP--RERIPRAVVQLTGIQERDV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + + ++AHN FD F+NAEL+R PL + IDT++++ Sbjct: 60 RKAPLFEDVAGTIYSLLT--GTIFVAHNVNFDFPFLNAELERAGYPPLS-IKAIDTVTLS 116 Query: 131 RRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P++++ DL S + I H H A+ D+ + + + ++ Sbjct: 117 QILLPTAKSFRLRDLTS-----SLQIEHDHPHSAVSDAEATTGLLVDLL 160 >gi|257094710|ref|YP_003168351.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047234|gb|ACV36422.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 469 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 12/169 (7%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGIT 66 R +ETTG + DRI +IG +E ++ +R N ++ PE ++ L+G Sbjct: 5 RLAFIGLETTGANPLRDRITKIGVLE----AEGDRVSTWSTLVNPQRPIPEFIQQLNGSR 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P+F+ + +E D + + +IAH+A+F+ F+ E QR+ K + ++ T Sbjct: 61 DATVADAPTFAQVAAELADRLHGRL--FIAHHARFNYAFVKREFQRLGKS--FRADVLCT 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++R+ P ++ L SL R+ +T S GAL +HLL + + Sbjct: 117 VRLSRKLFPEHQKHHLESLMVRHDLTTGVHS--GALAAAHLLGQFWCVL 163 >gi|312795413|ref|YP_004028335.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454] gi|312167188|emb|CBW74191.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454] Length = 281 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 11/176 (6%) Query: 1 MIRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 +I R + F D+ETTG DRI E+G +E+ D R + + P + P Sbjct: 36 LIHDADARPLAFVDLETTGGRPGLDRITEVGVIEV-DRDGVRR-WSTLVDPL-QPIPPFV 92 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L GITD ++ P+F ++ +E + + +IAHNA+FD GF+ ++I D Sbjct: 93 QQLTGITDAMVRGAPTFDALAAELARRLDGKL--FIAHNARFDHGFLKKAFEQIGIR-FD 149 Query: 120 PSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P ++ T+ ++R P SR+ L++L +R + +S +H AL D+ L+ + ++ Sbjct: 150 PD-VLCTVRLSRALFPRESRHGLDALAQR--LDLSACGRHRALADADLVWQFWQRV 202 >gi|324993194|gb|EGC25114.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK405] gi|327461463|gb|EGF07794.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1] gi|327489318|gb|EGF21111.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1058] Length = 814 Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 12/173 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 +N + V D+E TG S N +II+IG V L++ +T++ + P+ + E +K L Sbjct: 3 QNDYKYAVVDLEATGTGS-NAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIKEL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 59 TGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTPR- 115 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 116 -VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165 >gi|328956370|ref|YP_004373703.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2] gi|328456694|gb|AEB07888.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2] Length = 977 Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 25/224 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL ++D +IEI A L T R F+ F+ P+ + E ++L GI D Sbjct: 50 VVLDTETTGLSRQDDELIEISAAVLSGREVTER-FETFVRPS-KPIPAEIVELTGIRDAD 107 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128 ++D P + + F + IAHNA FD FI A D S I ID+L+ Sbjct: 108 VRDAPPATQAVRDLARFVGGRPV--IAHNAAFDRAFIEAV-----PGGSDASDIWIDSLA 160 Query: 129 IARRKHPS-SRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++R P + + L+SL + +G +SHR+ D L V+ ++ + + G Sbjct: 161 LSRIALPRLASHRLSSLAETFGCADVSHRAGD----DVRALCGVWRILLCALADLPAG-- 214 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 + P+++ R P+F+ I E EH Q+ Sbjct: 215 -----LLRRLADMHPDVAWSYR--PIFSHIASENPGEHFSLAQS 251 >gi|237654661|ref|YP_002890975.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237625908|gb|ACR02598.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 482 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 9/161 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R D+E+TG DRI EI + + D R ++ + P G+ P ++ GI+D Sbjct: 6 RLAFIDVESTGAHPVRDRITEIAILRVEDGEVVAR-WESLVAP-GQPIPPLIEEVTGISD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P+F + + ++AH+A+FD GFI RI ++ P ++ T+ Sbjct: 64 AMVAEAPAFEVLADTVAALL--EGCVFVAHSARFDYGFIRNAFTRIGREFEAP--VLCTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 ++R +P R+ L++L +R+G+ + ++H A+ D +L Sbjct: 120 KLSRALYPEHHRHGLDALIERHGLVCA--ARHRAMGDVEVL 158 >gi|121635139|ref|YP_975384.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18] gi|120866845|emb|CAM10604.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18] gi|325132197|gb|EGC54893.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190] gi|325138130|gb|EGC60703.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis ES14902] gi|325198587|gb|ADY94043.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136] Length = 470 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVVGLTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R+ P ++ Sbjct: 84 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSP--VLC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|282856872|ref|ZP_06266130.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens W5455] gi|282585290|gb|EFB90600.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens W5455] Length = 196 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 8/166 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 DIETTGL I+EI A+++ + R+FQ+ + P GR + +HGI D + Sbjct: 12 ALDIETTGLSPAFCGIVEIAALKIFP-DGSQRSFQMLVDP-GRPIPRDVSAIHGIDDAMV 69 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + +PS + + F + + HNA FD+ F+N ++R + D + DTL ++ Sbjct: 70 RGQPSAADAVAALVSFVGP--SPLVLHNAPFDMSFLNPVVRR-QRLQWDSPAVFDTLRLS 126 Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R+ P + L SL + + H AL D ++ +++ Sbjct: 127 RQAFPGLNSYSLESLSRFFDFDAG--GHHRALADCRYCVQLFARIL 170 >gi|254295577|ref|ZP_04963035.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 406e] gi|157805524|gb|EDO82694.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 406e] Length = 381 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V + + T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I ++ + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|289450465|ref|YP_003475243.1| DNA polymerase III subunit alpha, Gram-positive type [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185012|gb|ADC91437.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 1495 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 16/174 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCPNGRKNSPE-ALKLHG 64 + D+ETTGLD +R+IEIGA + + S + + TF L P + PE +KL G Sbjct: 446 VALDVETTGLDPVKERVIEIGAAKFVRNSSGEYEVSETFHRMLNPEVKL--PEFIMKLTG 503 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---LQRINKDPLDPS 121 IT + + DF + AHNA FD+GFI AE Q IN L + Sbjct: 504 ITQAEVDSGIKPLQAVQDLIDFVGDLPV--CAHNAMFDIGFIRAEGFRTQDINDPKLKFN 561 Query: 122 RI-IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I IDTL ++ PS S + L+++C I ++H H A+ D+ ++ + Sbjct: 562 PITIDTLRLSVLFWPSLSNHKLDTVCNFLQIDLAHH--HRAVDDAIACGQIFAR 613 >gi|76808562|ref|YP_334417.1| DNA polymerase/helicase [Burkholderia pseudomallei 1710b] gi|126455164|ref|YP_001067249.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia pseudomallei 1106a] gi|134278018|ref|ZP_01764733.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 305] gi|217420886|ref|ZP_03452391.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 576] gi|242315973|ref|ZP_04814989.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1106b] gi|254195634|ref|ZP_04902061.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei S13] gi|254261397|ref|ZP_04952451.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1710a] gi|76578015|gb|ABA47490.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 1710b] gi|126228806|gb|ABN92346.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1106a] gi|134251668|gb|EBA51747.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 305] gi|169652380|gb|EDS85073.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei S13] gi|217396298|gb|EEC36315.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 576] gi|242139212|gb|EES25614.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1106b] gi|254220086|gb|EET09470.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1710a] Length = 381 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V + + T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I ++ + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|297584199|ref|YP_003699979.1| DNA polymerase III subunit epsilon [Bacillus selenitireducens MLS10] gi|297142656|gb|ADH99413.1| DNA polymerase III, epsilon subunit [Bacillus selenitireducens MLS10] Length = 242 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 14/170 (8%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 VFD+ETTG D ++ IGA +L +D+ + F + P + S L G+ Sbjct: 62 VFDLETTGFFCNLGDEVLAIGATKLNRNRIDFPEQ---FYEVIEPV-KPMSAFVSNLTGM 117 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E + +F FS+F +F + + +AH A FDV F+ R DP ID Sbjct: 118 THEEVTAGLAFPEAFSKFLEF--SKGSILVAHPASFDVQFLKILADRWRLHGYDP-LYID 174 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ +P RN L+ L K Y I S R H AL D+++ + V+ ++ Sbjct: 175 QYQLAKSLYPRKRNSLDELIKLYQIETSGR--HHALADAYMTATVFHHLL 222 >gi|291548851|emb|CBL25113.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruminococcus torques L2-14] Length = 231 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 11/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTGL + IIEIGA+++ + +R F F+ P+ + +P + IT++ Sbjct: 6 IAFDLETTGLSPQEHEIIEIGALKVREGKVVDR-FMEFVHPD-KPITPMITNITHITNDM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128 + S + +F F ++ I HN FD F+ R + L ++ IDTL Sbjct: 64 VAGARSCPEVIHDFLSFC--EDDVLIGHNVMFDYSFVKCSAVR---EGLTFEKMGIDTLK 118 Query: 129 IARRKHPS-SRNDLNSLCKRYGI--TISHRSKHGALLDSHL 166 IAR+ H L +LC Y I +HR+ + AL + L Sbjct: 119 IARKVHKDFESKSLGALCDYYHIENPAAHRAYYDALATAKL 159 >gi|321309654|ref|YP_004191983.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str. Langford 1] gi|319801498|emb|CBY92144.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma haemofelis str. Langford 1] Length = 1393 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 90/200 (45%), Gaps = 29/200 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSPEALKLH----- 63 VFDIETTGL+ D I EI + YS R T+ + E LK H Sbjct: 353 VFDIETTGLNPLFDEITEIA---IYKYSNKRRIATYHSYF------KISEPLKQHIKDLT 403 Query: 64 GITDEFLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPS 121 ITDE L +K + E DF Q + +AHN +FD F+NA+ ++ +PL + Sbjct: 404 HITDELLAEKGQDLEVVLKEVKDF--TQGSVLVAHNGIEFDFPFLNAKYIKLGMEPLS-N 460 Query: 122 RIIDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI-----K 173 +IDTL +++ + + L ++CKR G+ H A D +L V++ K Sbjct: 461 PLIDTLRLSQTIFSEEKYKSHSLGAICKRVGVEYDLEHAHSADFDVDVLWQVFMYSLEPK 520 Query: 174 MMVGGSQINFGFKTNEDRFF 193 + G + G K D F Sbjct: 521 LKEWGVNLEDGLKEANDAVF 540 >gi|237750780|ref|ZP_04581260.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879] gi|229373225|gb|EEO23616.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879] Length = 268 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 76/168 (45%), Gaps = 20/168 (11%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNS 56 I N+ + DIETT KN +IIEIGA+ E+LD T + F+ Sbjct: 73 INLNEAKLCFVDIETTSASVKNGQIIEIGAIIAQNGEILDTFDT-LVYSPFV-------- 123 Query: 57 PE-ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PE + L GI L+D P + +F F ++ ++AHN FD FI L + Sbjct: 124 PEDIIDLTGIDSYMLEDAPRLEQVLKQFRAFLG--DSVFVAHNVSFDYNFIAESLHEYDM 181 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGAL 161 PL R+ TL ++RR S + L L GI +HR+ AL Sbjct: 182 PPLFNPRLC-TLDLSRRTIVSKKYALAYLNDMLGINTAQAHRAYADAL 228 >gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] Length = 205 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 7/166 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + +++ IIEI A++ +R F + P KL GIT + Sbjct: 13 IIDIETTGFNPESNDIIEIAAIKYQGNIILDR-FWSLIKPEIELIPEHISKLTGITTAMV 71 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLSI 129 D+P+ + +F +F +N + HN +FD+ F+N + + I NK +P D L+ Sbjct: 72 IDQPTVDKVLPDFLNFI--ENTILVGHNIRFDLAFLNKKAKEILNKTIKNPFICTDHLAR 129 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 S++ L S+ + + I S +H A+ D+ + +++IKM+ Sbjct: 130 KILSDIDSKS-LASIAQHFNIPFSR--QHRAMYDAEVNLEIFIKML 172 >gi|167920040|ref|ZP_02507131.1| possible DNA polymerase/helicase [Burkholderia pseudomallei BCC215] Length = 346 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V + + T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I ++ + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|205373870|ref|ZP_03226672.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus coahuilensis m4-4] Length = 194 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 11/156 (7%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65 R +V D+ETTG K DRII++ A L+++ + F FL PN K P + +L GI Sbjct: 5 RYVVVDLETTGNSPKRGDRIIQLSAC-LIEHGEIVEQFTSFLNPN--KTIPIFIEELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + D P+F I + N+ + ++AHN FD+ F+ EL I+D Sbjct: 62 TQPMVDDAPNFEQIAPKLISMLND--SVFVAHNVTFDLSFLQWELHAAGYKTFQ-GPILD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160 T+ +A+ P+S + L L +++ + H H A Sbjct: 119 TVELAKICFPTSNSYKLGDLSEKFNLL--HERPHQA 152 >gi|126438667|ref|YP_001059957.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668] gi|126218160|gb|ABN81666.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 668] Length = 381 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V + + T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I ++ + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|293568616|ref|ZP_06679931.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1071] gi|291588576|gb|EFF20409.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1071] Length = 929 Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + K DRII+ G V +++ + F + + P GRK S + L GIT++ + Sbjct: 8 VVDIETTGTNPKEDRIIQFGCV-MIEAGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 + P F + ++ + ++AHN FD F+N EL R L P IDT+ + Sbjct: 66 QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ PS R L L + G H + H A D+ + Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157 >gi|257886903|ref|ZP_05666556.1| DNA polymerase III [Enterococcus faecium 1,141,733] gi|257822957|gb|EEV49889.1| DNA polymerase III [Enterococcus faecium 1,141,733] Length = 929 Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + K DRII+ G V +++ + F + + P GRK S + L GIT++ + Sbjct: 8 VVDIETTGTNPKEDRIIQFGCV-MIEAGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 + P F + ++ + ++AHN FD F+N EL R L P IDT+ + Sbjct: 66 QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ PS R L L + G H + H A D+ + Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157 >gi|226197921|ref|ZP_03793495.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pakistan 9] gi|237813373|ref|YP_002897824.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei MSHR346] gi|254181036|ref|ZP_04887634.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1655] gi|184211575|gb|EDU08618.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1655] gi|225930109|gb|EEH26122.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pakistan 9] gi|237506315|gb|ACQ98633.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei MSHR346] Length = 381 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V + + T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I ++ + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|167825322|ref|ZP_02456793.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 9] Length = 352 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V + + T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I ++ + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|294622016|ref|ZP_06701159.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium U0317] gi|291598406|gb|EFF29480.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium U0317] Length = 929 Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + K DRII+ G V +++ + F + + P GRK S + L GIT++ + Sbjct: 8 VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 + P F + ++ + ++AHN FD F+N EL R L P IDT+ + Sbjct: 66 QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ PS R L L + G H + H A D+ + Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157 >gi|227813558|ref|YP_002813567.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. CDC 684] gi|227004983|gb|ACP14726.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. CDC 684] Length = 315 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R + L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRIMSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|167903799|ref|ZP_02491004.1| possible DNA polymerase/helicase [Burkholderia pseudomallei NCTC 13177] Length = 349 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V + + T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I ++ + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|167739715|ref|ZP_02412489.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 14] Length = 323 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V + + T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I ++ + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|329938978|ref|ZP_08288352.1| exonuclease [Streptomyces griseoaurantiacus M045] gi|329301863|gb|EGG45756.1| exonuclease [Streptomyces griseoaurantiacus M045] Length = 242 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 16/156 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ AV + + + + +L G EA +HG+T+E L Sbjct: 11 AFDTETTGVDVEGDRIVS-AAVVVQEAAGARPRVRRWLVDPGVPVPAEATAVHGLTEEHL 69 Query: 71 K-----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD------ 119 + P + E + + NA FD+ ++ EL+R LD Sbjct: 70 RRNGRWPAPVMREMADEL-QYLAAAGRPLVVMNAPFDLTLLDRELRRHRASSLDRWLAAS 128 Query: 120 -PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 P R++D + R ++ R L LC YG+T+ Sbjct: 129 APLRVLDPRVLDRHLDRYRKGRRTLTDLCAHYGVTL 164 >gi|326791343|ref|YP_004309164.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM 5427] gi|326542107|gb|ADZ83966.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM 5427] Length = 837 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 17/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+E+TGL + D +I+I A+ Y K Q+ + K+ E+ +HG +D+ Sbjct: 477 VVLDVESTGLSTIKDDVIQIAAIR---YGKEGVVDQLDILLKPTKSVGESYYVHGFSDDL 533 Query: 70 L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L K+ +F F Q A + HN +D+ I + + R +P+ ++ DTL Sbjct: 534 LQKEGMEPKEALKQFVHFI--QGAVLVGHNVNYDLQIIKSMMSRYKLEPIGEYQVYDTLD 591 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD--------SHLLSDV 170 +A + +P S + L +L K I H A+ D SHLL + Sbjct: 592 LAYKVYPKLSNHKLETLSKL--IVTETIPTHNAMQDILATSEVLSHLLKHI 640 >gi|167912066|ref|ZP_02499157.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 112] Length = 343 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V + + T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I ++ + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|167720732|ref|ZP_02403968.1| possible DNA polymerase/helicase [Burkholderia pseudomallei DM98] Length = 334 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V + + T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I ++ + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|257898090|ref|ZP_05677743.1| DNA polymerase III [Enterococcus faecium Com15] gi|257836002|gb|EEV61076.1| DNA polymerase III [Enterococcus faecium Com15] Length = 929 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + K DRII+ G V +++ + F + + P GRK S + L GIT++ + Sbjct: 8 VVDIETTGTNPKEDRIIQFGCV-MIEAGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 + P F + ++ + ++AHN FD F+N EL R L P IDT+ + Sbjct: 66 QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ PS R L L + G H + H A D+ + Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157 >gi|257883091|ref|ZP_05662744.1| DNA polymerase III [Enterococcus faecium 1,231,502] gi|257818749|gb|EEV46077.1| DNA polymerase III [Enterococcus faecium 1,231,502] Length = 929 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + K DRII+ G V +++ + F + + P GRK S + L GIT++ + Sbjct: 8 VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 + P F + ++ + ++AHN FD F+N EL R L P IDT+ + Sbjct: 66 QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ PS R L L + G H + H A D+ + Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157 >gi|227551932|ref|ZP_03981981.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecium TX1330] gi|257895474|ref|ZP_05675127.1| DNA polymerase III [Enterococcus faecium Com12] gi|293378340|ref|ZP_06624509.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecium PC4.1] gi|227178933|gb|EEI59905.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecium TX1330] gi|257832039|gb|EEV58460.1| DNA polymerase III [Enterococcus faecium Com12] gi|292643204|gb|EFF61345.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecium PC4.1] Length = 929 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + K DRII+ G V +++ + F + + P GRK S + L GIT++ + Sbjct: 8 VVDIETTGTNPKEDRIIQFGCV-MIEAGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 + P F + ++ + ++AHN FD F+N EL R L P IDT+ + Sbjct: 66 QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ PS R L L + G H + H A D+ + Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157 >gi|167846824|ref|ZP_02472332.1| possible DNA polymerase/helicase [Burkholderia pseudomallei B7210] Length = 348 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V + + T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I ++ + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|299821667|ref|ZP_07053555.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601] gi|299817332|gb|EFI84568.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601] Length = 929 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M RK K R +V D+ETTG + ++DRII+ A L++ SK T+ F+ P R+ P Sbjct: 1 MKRKEK-RYLVVDLETTGNQANRHDRIIQFAAT-LVEGSKRLETYSTFINPE-REIPPFI 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L GI D P F+ + + ++ ++AHN FD F+ E+QR PL Sbjct: 58 QQLTGIKPSDCYDAPIFTDVAPIIQNLL--EDCIFVAHNVSFDWTFLAREMQRAGY-PLP 114 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ +DT+ +AR +P L L + + H H A D+ + +D Sbjct: 115 KTKKLDTVELARIIYPGIDSYKLQDLSDEF--KLGHDRPHQADSDAEVTAD 163 >gi|293571662|ref|ZP_06682683.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E980] gi|291608332|gb|EFF37633.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E980] Length = 929 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + K DRII+ G V +++ + F + + P GRK S + L GIT++ + Sbjct: 8 VVDIETTGTNPKEDRIIQFGCV-MIEAGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 + P F + ++ + ++AHN FD F+N EL R L P IDT+ + Sbjct: 66 QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ PS R L L + G H + H A D+ + Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157 >gi|69247318|ref|ZP_00604300.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase [Enterococcus faecium DO] gi|257890489|ref|ZP_05670142.1| DNA polymerase III [Enterococcus faecium 1,231,410] gi|258614363|ref|ZP_05712133.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Enterococcus faecium DO] gi|260558928|ref|ZP_05831115.1| DNA polymerase III [Enterococcus faecium C68] gi|293559766|ref|ZP_06676286.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1162] gi|314940162|ref|ZP_07847340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a04] gi|314942421|ref|ZP_07849264.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133C] gi|314950181|ref|ZP_07853466.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0082] gi|314952303|ref|ZP_07855314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133A] gi|314994254|ref|ZP_07859557.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133B] gi|68194888|gb|EAN09359.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase [Enterococcus faecium DO] gi|257826849|gb|EEV53475.1| DNA polymerase III [Enterococcus faecium 1,231,410] gi|260075036|gb|EEW63351.1| DNA polymerase III [Enterococcus faecium C68] gi|291606249|gb|EFF35663.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1162] gi|313591341|gb|EFR70186.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133B] gi|313595562|gb|EFR74407.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133A] gi|313598821|gb|EFR77666.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133C] gi|313640601|gb|EFS05181.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a04] gi|313643491|gb|EFS08071.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0082] Length = 929 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + K DRII+ G V +++ + F + + P GRK S + L GIT++ + Sbjct: 8 VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 + P F + ++ + ++AHN FD F+N EL R L P IDT+ + Sbjct: 66 QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ PS R L L + G H + H A D+ + Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157 >gi|30263558|ref|NP_845935.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames] gi|47528957|ref|YP_020306.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames Ancestor'] gi|49186408|ref|YP_029660.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne] gi|65320888|ref|ZP_00393847.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Bacillus anthracis str. A2012] gi|165871011|ref|ZP_02215662.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0488] gi|167636474|ref|ZP_02394772.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0442] gi|167640607|ref|ZP_02398869.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0193] gi|170688408|ref|ZP_02879616.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0465] gi|170708125|ref|ZP_02898572.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0389] gi|177652488|ref|ZP_02934955.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0174] gi|190565123|ref|ZP_03018044.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis Tsiankovskii-I] gi|229603113|ref|YP_002867802.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0248] gi|254686178|ref|ZP_05150037.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. CNEVA-9066] gi|254726056|ref|ZP_05187838.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A1055] gi|254738651|ref|ZP_05196354.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Western North America USA6153] gi|254744791|ref|ZP_05202469.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Kruger B] gi|254752968|ref|ZP_05205004.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum] gi|254759240|ref|ZP_05211266.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Australia 94] gi|30258193|gb|AAP27421.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. Ames] gi|47504105|gb|AAT32781.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49180335|gb|AAT55711.1| DNA polymerase III, epsilon subunit, putative [Bacillus anthracis str. Sterne] gi|164713222|gb|EDR18748.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0488] gi|167511475|gb|EDR86859.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0193] gi|167528133|gb|EDR90925.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0442] gi|170126933|gb|EDS95813.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0389] gi|170667578|gb|EDT18333.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0465] gi|172082162|gb|EDT67229.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0174] gi|190564440|gb|EDV18404.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis Tsiankovskii-I] gi|229267521|gb|ACQ49158.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0248] Length = 315 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R + L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRIMSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|314997169|ref|ZP_07862155.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a01] gi|313588743|gb|EFR67588.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a01] Length = 929 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + K DRII+ G V +++ + F + + P GRK S + L GIT++ + Sbjct: 8 VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 + P F + ++ + ++AHN FD F+N EL R L P IDT+ + Sbjct: 66 QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ PS R L L + G H + H A D+ + Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157 >gi|293553821|ref|ZP_06674436.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1039] gi|291602027|gb|EFF32264.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1039] Length = 929 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + K DRII+ G V +++ + F + + P GRK S + L GIT++ + Sbjct: 8 VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 + P F + ++ + ++AHN FD F+N EL R L P IDT+ + Sbjct: 66 QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ PS R L L + G H + H A D+ + Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157 >gi|294619947|ref|ZP_06699320.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1679] gi|291593804|gb|EFF25305.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1679] Length = 929 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + K DRII+ G V +++ + F + + P GRK S + L GIT++ + Sbjct: 8 VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 + P F + ++ + ++AHN FD F+N EL R L P IDT+ + Sbjct: 66 QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ PS R L L + G H + H A D+ + Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157 >gi|294616364|ref|ZP_06696157.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1636] gi|291590878|gb|EFF22594.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1636] Length = 929 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + K DRII+ G V +++ + F + + P GRK S + L GIT++ + Sbjct: 8 VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 + P F + ++ + ++AHN FD F+N EL R L P IDT+ + Sbjct: 66 QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ PS R L L + G H + H A D+ + Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157 >gi|261209451|ref|ZP_05923814.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289566622|ref|ZP_06447041.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium D344SRF] gi|260076579|gb|EEW64343.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289161563|gb|EFD09444.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium D344SRF] Length = 929 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + K DRII+ G V +++ + F + + P GRK S + L GIT++ + Sbjct: 8 VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 + P F + ++ + ++AHN FD F+N EL R L P IDT+ + Sbjct: 66 QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ PS R L L + G H + H A D+ + Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157 >gi|257884118|ref|ZP_05663771.1| DNA polymerase III [Enterococcus faecium 1,231,501] gi|257819956|gb|EEV47104.1| DNA polymerase III [Enterococcus faecium 1,231,501] Length = 929 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + K DRII+ G V +++ + F + + P GRK S + L GIT++ + Sbjct: 8 VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 + P F + ++ + ++AHN FD F+N EL R L P IDT+ + Sbjct: 66 QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ PS R L L + G H + H A D+ + Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157 >gi|257879980|ref|ZP_05659633.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|257894416|ref|ZP_05674069.1| DNA polymerase III [Enterococcus faecium 1,231,408] gi|257814208|gb|EEV42966.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|257830795|gb|EEV57402.1| DNA polymerase III [Enterococcus faecium 1,231,408] Length = 929 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG + K DRII+ G V +++ + F + + P GRK S + L GIT++ + Sbjct: 8 VVDIETTGTNPKEDRIIQFGCV-MIESGRITSRFSIDIHP-GRKISKQIQHLTGITNQRV 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 + P F + ++ + ++AHN FD F+N EL R L P IDT+ + Sbjct: 66 QKAPYFEDVAQTIYNLL--ADTIFVAHNIYFDYNFLNHELMRCGLPSLKIPG--IDTVEL 121 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ PS R L L + G H + H A D+ + Sbjct: 122 AQIFLPTEPSFR--LADLSESLGFI--HENPHQADSDAEV 157 >gi|119478307|ref|ZP_01618338.1| ribonuclease T [marine gamma proteobacterium HTCC2143] gi|119448647|gb|EAW29892.1| ribonuclease T [marine gamma proteobacterium HTCC2143] Length = 235 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D + D I+EI A L + ++TF + P G P AL+ G Sbjct: 35 VVIDVETGGFDCQTDAILEIAASTLTMNDEGIICIDKTFSFNVAPFEGANLEPAALEFTG 94 Query: 65 I--TDEFLKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQR--I 113 I F + P +F++ + +Q A + HNA FD GF+ A ++R I Sbjct: 95 IDPYHPFREADPE-EVVFTDLLNAIRKQVKVHDCTRAVLVGHNAHFDHGFVMAAVERCQI 153 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P + DT ++A + L C+ GI+ ++ H A D+ ++++ Sbjct: 154 KRNPFHPFSVFDTATLAGLAF--GQTVLAKACQTAGISFNNAEAHSAAYDTGKTAELFCL 211 Query: 174 MM 175 ++ Sbjct: 212 IV 213 >gi|262274550|ref|ZP_06052361.1| ribonuclease T [Grimontia hollisae CIP 101886] gi|262221113|gb|EEY72427.1| ribonuclease T [Grimontia hollisae CIP 101886] Length = 223 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI AV L +D + ++T + P G EAL +G Sbjct: 20 VVIDVETAGFNPQTDALLEICAVTLKMDEDGWLSPDKTIHFHVTPFEGANLEQEALAFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQRIN- 114 I D F L+ E + + Q A +AHNA FD F+ A +R N Sbjct: 80 IKDPFSPLRGAVDEEHALKEIFKLIRKEQKASGCQRAIMVAHNANFDHSFVMAASERANL 139 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L CK GI + H AL D+ ++++ + Sbjct: 140 KRNPFHPFATFDTAALSGLA--LGQTVLAKACKTAGIAFDNNEAHSALYDTERTAELFCE 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|315640656|ref|ZP_07895761.1| DNA polymerase III [Enterococcus italicus DSM 15952] gi|315483595|gb|EFU74086.1| DNA polymerase III [Enterococcus italicus DSM 15952] Length = 911 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 8/165 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + K DRI + G V + + R F + P GR SP+ L T++ + Sbjct: 6 IVDIETTGTNPKEDRIFQFGCVFVENGEIVGR-FATMIHP-GRSISPQIQHLTHTTNKDV 63 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + ++ + ++AHN FD F+NAEL+R + L + IDT+ +A Sbjct: 64 RHSPYFEDVAPTIYELLS--GTVFVAHNIHFDYRFLNAELERCGCERLQ-LKGIDTVELA 120 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + P+ + L+ L + G ++H H A D+ + + ++I + Sbjct: 121 QILFPTEISFRLSDLSESLG--LAHERPHQADSDAEVTAQLFIAL 163 >gi|239623211|ref|ZP_04666242.1| DNA polymerase III subunit epsilon [Clostridiales bacterium 1_7_47_FAA] gi|239522177|gb|EEQ62043.1| DNA polymerase III subunit epsilon [Clostridiales bacterium 1_7_47FAA] Length = 240 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 10/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D+ETTGL+ K ++I EI A++++D + R + F+ P GR +L GITD Sbjct: 6 IALDLETTGLEPKQEKITEIAALKVVDGVISQR-YVTFVNP-GRSLGAYITQLTGITDGM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P + + F + + HN +FD F+ +N+ IDTL++ Sbjct: 64 LADAPPIEELIEDVVKFCG--DLPLLGHNIRFDYSFLKHAA--VNRRLEFEREGIDTLTL 119 Query: 130 ARR-KHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLL 167 R +R +L+ C + + + +HR++ A +HLL Sbjct: 120 CRAFMTGETRKNLSCACSYFHVPQSTAHRAQADAEA-AHLL 159 >gi|126435878|ref|YP_001071569.1| hypothetical protein Mjls_3300 [Mycobacterium sp. JLS] gi|126235678|gb|ABN99078.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS] Length = 630 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 33/177 (18%) Query: 10 IVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALK 61 +V D+ETTG + +R I EIGAV++ R +V L GR P+ + Sbjct: 31 VVVDLETTGGRATGERPDAITEIGAVKV-------RGGEVLGELATLVDPGRAIPPQIVS 83 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDP 120 L GIT + P S+ F +F + + +AHNA FD+GF+ A ++ P P Sbjct: 84 LTGITTAMVCAAPRIESVLPAFLEF--ARGSVLVAHNAGFDIGFLRAAAEQCGLTWPRPP 141 Query: 121 SRIIDTLSIARR-----KHPSSRNDLNSLCK--RYGITISHRSKHGALLDSHLLSDV 170 ++ T+ +ARR + PS R L++L + R T +HR AL D+ DV Sbjct: 142 --VLCTVKLARRVLTRDEAPSVR--LSALAQLFRAKTTPTHR----ALDDARATVDV 190 >gi|309807670|ref|ZP_07701611.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LactinV 01V1-a] gi|308169103|gb|EFO71180.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LactinV 01V1-a] Length = 275 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 14/161 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALK-LHGITD 67 ++ D+ETTGLD N+ IIEIGA+ K + + + C + + P A+K L GI+D Sbjct: 110 VIIDLETTGLDYINNNIIEIGAI------KIAKNIEEYSCIVKQNITLPNAIKILTGISD 163 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 LK+ S E F ++ + +N FD+ FIN L+R + L +++ D + Sbjct: 164 AELKNGKDESVAIKELCTFIGDK--ALVGYNVNFDIRFINEALKRNGQSQL-TNKVYDVM 220 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLL 167 +R +N L+++ YGI I + H A+ D ++ Sbjct: 221 KYVKRDKMFLKNYKLDTVLSEYGINI--KVPHRAIEDVKII 259 >gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894] Length = 350 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTG + RI EIG V + + T+ + P + P +L GITD ++ Sbjct: 19 DLETTGGSAAEHRITEIGVVVVNANGVS--TWTTLVDPQ-QPIPPFIQQLTGITDAMVRG 75 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P+F+ I ++ + + ++AHNA FD GF+ AE +R +P ++ T+ ++R Sbjct: 76 APTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGIA-FNPD-VLCTVRLSRA 131 Query: 133 KHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 132 LFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|89901349|ref|YP_523820.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118] gi|89346086|gb|ABD70289.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118] Length = 476 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 7/149 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTG + +DRI EI AV + + + R + + P G SP L GI++ Sbjct: 6 VLLDLETTGGNPVHDRITEIAAVRIENGQEVAR-WSTLVNP-GCSISPFIQHLTGISNAM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P F ++ + A +AHN +FD GF+ EL R+ D + + T+ + Sbjct: 64 VRGAPGFETVAQHLLALLD--GAVLVAHNVRFDHGFLLNELARL--DVALRVKTLCTVRL 119 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSK 157 +R +P + + L+++ +R+GI R + Sbjct: 120 SRLLYPQHKGHGLDAIMQRHGIRTLERHR 148 >gi|116511811|ref|YP_809027.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris SK11] gi|116107465|gb|ABJ72605.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactococcus lactis subsp. cremoris SK11] Length = 277 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKN-SPEALKLHG 64 + +VFD ETTG ++ + II+IGAV+ Y + N+ F L N R S E +L G Sbjct: 4 KYVVFDFETTGFSAQKNEIIQIGAVK---YDENNQELARFNQLVKNQRSYVSTEITQLTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I L ++P+ I +F DF + +AHNA FD+ F+ + ++ R+ Sbjct: 61 IKPADLLNQPTIEEILPDFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVY 118 Query: 125 DTLSIARR 132 DTL+ +++ Sbjct: 119 DTLAESKK 126 >gi|301166002|emb|CBW25576.1| putative DNA polymerase III PolC-type alpha subunit [Bacteriovorax marinus SJ] Length = 295 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 11/164 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 + D+ETTGL D++IE+ A+++ Y + F + P + P+ + +HGIT++ Sbjct: 21 VALDLETTGLSPLIDKVIELSAIKVTPYGE--EVFDELIDP--KIEIPKFTIDIHGITND 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ K + + EF +F + +AHNAKFD+GFI + +I PL S + + Sbjct: 77 MVQGKRTLDKVLPEFINFIG--SLPLVAHNAKFDLGFIVFGMHQIGL-PLHESHVYCSCK 133 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R S N L++L I + + H AL D+ VY Sbjct: 134 FSRYALRGSTNFKLSTLTTELEIPLENH--HRALDDAIACLKVY 175 >gi|124265242|ref|YP_001019246.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] gi|124258017|gb|ABM93011.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] Length = 208 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ + R EI AV L+ + +Q + +G P +L GI++ Sbjct: 6 VIDFETTGISPGQGARATEIAAV-LVRGGQIVGRYQSLM-NSGAWVPPFIEQLTGISNRM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P + E DF +AHNA FD GF AE R D TL + Sbjct: 64 LERAPPAERVMREVLDF--TAGCPLVAHNAAFDRGFWQAERARAGCDEDAAHAFACTLLL 121 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR +P + N L +L K + + R+ H AL D+ + + ++M Sbjct: 122 ARRLYPEAPNHRLGTLAKLHALPDGGRA-HRALADAETAAHLLLRM 166 >gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 324 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 14/198 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRI+ G +L + + + P + P + +HG+T L Sbjct: 21 VVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTLVNP---ERDPGPVWIHGLTTGVL 76 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLSI 129 KD P F I E ++ +AHNA FD + E R + + P R + T+++ Sbjct: 77 KDAPLFKDISDELSARLADRVL--VAHNAAFDWSMLAREYARAER--VAPVRQRLCTIAL 132 Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ P + L SL +G+ + R+ H AL D+ +L++ + +V + Sbjct: 133 SKELGLPLPNHKLESLAAHFGV-VQERAHH-ALDDARVLAEAFRPSLVAAAGGGVRLPLL 190 Query: 189 EDRFFKE--EKKTVPNIS 204 E R E E P I Sbjct: 191 ECRPLTEWSEPPATPRIG 208 >gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579] gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579] Length = 315 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH ++ + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-ATNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|310641367|ref|YP_003946125.1| DNA polymerase iii, epsilon subunit [Paenibacillus polymyxa SC2] gi|309246317|gb|ADO55884.1| DNA polymerase III, epsilon subunit [Paenibacillus polymyxa SC2] Length = 245 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 10/172 (5%) Query: 5 NKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62 +++ +VFD+ETTG +++ D I+ GA+ ++ + Q + N R PE + +L Sbjct: 56 DRLETVVFDLETTGFSAQHGDEILSFGAIRVVGDVIMEKE-QFYTLVNPRTEIPEQITRL 114 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT E P + +F F + +AH + D F+NA L + +K L R Sbjct: 115 TGITREMTDGAPPLMNGLHDFMSFVGGRVL--VAHASAHDKAFLNAALWKTSKVQLT-HR 171 Query: 123 IIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++DT+ +A+ P L+ L I I R H AL D+ + + +++ Sbjct: 172 VLDTMMLAKWLEPQQHQTYSLDELLAYQSIPIEGR--HHALEDAKMTAKLWV 221 >gi|281491483|ref|YP_003353463.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp. lactis KF147] gi|281375201|gb|ADA64714.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis KF147] Length = 277 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKN-SPEALKLHG 64 + +VFD ETTG ++ + II+IGAV+ Y + N+ F L N R S E +L G Sbjct: 4 KYVVFDFETTGFSAQKNEIIQIGAVK---YDENNQEQARFNQLVKNQRSYVSTEITQLTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I L ++P+ I EF DF + +AHNA FD+ F+ + ++ R+ Sbjct: 61 IKPADLLNQPTIEEILPEFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVY 118 Query: 125 DTLSIARR 132 DTL+ +++ Sbjct: 119 DTLAESKK 126 >gi|257084662|ref|ZP_05579023.1| DNA polymerase III [Enterococcus faecalis Fly1] gi|256992692|gb|EEU79994.1| DNA polymerase III [Enterococcus faecalis Fly1] Length = 929 Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QAVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|326406526|gb|ADZ63597.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp. lactis CV56] Length = 277 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKN-SPEALKLHG 64 + +VFD ETTG ++ + II+IGAV+ Y + N+ F L N R S E +L G Sbjct: 4 KYVVFDFETTGFSAQKNEIIQIGAVK---YDENNQEQARFNQLVKNQRSYVSTEITQLTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I L ++P+ I EF DF + +AHNA FD+ F+ + ++ R+ Sbjct: 61 IKPADLLNQPTIEEILPEFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVY 118 Query: 125 DTLSIARR 132 DTL+ +++ Sbjct: 119 DTLAESKK 126 >gi|15672964|ref|NP_267138.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis Il1403] gi|12723925|gb|AAK05080.1|AE006332_9 DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis Il1403] Length = 277 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKN-SPEALKLHG 64 + +VFD ETTG ++ + II+IGAV+ Y + N+ F L N R S E +L G Sbjct: 4 KYVVFDFETTGFSAQKNEIIQIGAVK---YDENNQEQARFNQLVKNQRSYVSTEITQLTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I L ++P+ I EF DF + +AHNA FD+ F+ + ++ R+ Sbjct: 61 IKPADLLNQPTIEEILPEFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVY 118 Query: 125 DTLSIARR 132 DTL+ +++ Sbjct: 119 DTLAESKK 126 >gi|294668271|ref|ZP_06733376.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309790|gb|EFE51033.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 493 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 13/174 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 ++ D+E TG + DRI EI + D + + Q+ N ++N PE + L GI DE Sbjct: 22 VIIDLEATGGNPYTDRITEIAFLRF-DGNGVSSYRQLV---NPQRNIPEFVSNLTGIDDE 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P F+ + + + +AHN+KFD F+ E R P+ + T+ Sbjct: 78 MVADAPPFADLSDDL--LHRLRGTLLLAHNSKFDYTFLRHEFSRCRLSYAAPT--LCTVQ 133 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++RR +P +++L+S+ +R+ I +S S+H A+ D L+D Y+++ I Sbjct: 134 LSRRLYPQFFKHNLDSIIERHQIAVS--SRHRAMNDVLALAD-YLELTAASHGI 184 >gi|229174271|ref|ZP_04301804.1| DNA polymerase III alpha subunit [Bacillus cereus MM3] gi|228609128|gb|EEK66417.1| DNA polymerase III alpha subunit [Bacillus cereus MM3] Length = 318 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P ++ P+ + L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + IAHNA FD+ F+ + + + P +++IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIIAHNASFDMRFLKSNVSMLGL-PEPQNKVIDTVF 127 Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ KH + + L +L + GI + S H A D + VY K Sbjct: 128 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4] gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4] Length = 318 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 72 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH ++ + L +L + GI + S H A D + VY K Sbjct: 129 AKKYMKH-ATNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|124516571|gb|EAY58079.1| DNA polymerase III, epsilon subunit [Leptospirillum rubarum] Length = 265 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 13/173 (7%) Query: 7 MRKIVFDIETTGL--DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLH 63 M+ D+ETTGL DS+ RIIE+G + +T + G P+ + K++ Sbjct: 1 MKVTFLDVETTGLLRDSRA-RIIELGFSSWENGKLLRKTSTLI---KGADIVPDNISKIN 56 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E LKD P F ++ + Q + +AHN FDVG +N EL ++ PL + Sbjct: 57 GITTEMLKDAPRFEEVWKSIKG--DIQGSLLVAHNLAFDVGMVNRELILADRIPLG-NMG 113 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDTL ++R+ P S L + K GI + + H A+ D L + ++ Sbjct: 114 IDTLPLSRKMLPELSSYRLGEIAKHMGIL--NENPHRAMGDLETLEKIVSNLL 164 >gi|256961321|ref|ZP_05565492.1| DNA polymerase III [Enterococcus faecalis Merz96] gi|293383606|ref|ZP_06629516.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis R712] gi|293387281|ref|ZP_06631838.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis S613] gi|312906156|ref|ZP_07765168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 512] gi|312909501|ref|ZP_07768356.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 516] gi|256951817|gb|EEU68449.1| DNA polymerase III [Enterococcus faecalis Merz96] gi|291079118|gb|EFE16482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis R712] gi|291083318|gb|EFE20281.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis S613] gi|310627802|gb|EFQ11085.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 512] gi|311290174|gb|EFQ68730.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 516] Length = 929 Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V L+ K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCV-LVQEGKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|21684668|gb|AAM09079.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps] Length = 157 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 4/116 (3%) Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A +HG+ DEFL +P+F +I F + HN FD+ F++A L P Sbjct: 25 AQAVHGLRDEFLATQPTFCAIAQGLLFFLCRST--LVGHNLSFDLNFLDAGLASAGFMPT 82 Query: 119 D--PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +IDT+ ++ R L+S C G+ R++HGAL D+ LL++ ++ Sbjct: 83 ARYCHGVIDTMPHLAQRGSRRRFSLDSCCDMLGVRREDRARHGALEDAVLLAEAFV 138 >gi|8134659|sp|O54364|RNT_PASHA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|2731432|gb|AAB93471.1| RNAse T [Mannheimia haemolytica] Length = 216 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET GL+++ D ++E+ A+ L +D Y ++ + P G +PE+LK +G Sbjct: 23 VVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNG 82 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFI-NAELQRIN- 114 I D L+ + + +F EQ + +AHNA D GF A ++RIN Sbjct: 83 IDIDNPLRGAVAENIAIPGMFIMVRKAMKEQGCQRGVIVAHNAASDPGFFYRAAIKRINA 142 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +DP P + DT ++A + + L C+ I + H AL D+ ++++ Sbjct: 143 KRDPFHPFAMFDTATLAGFMY--GQTVLVKACQVAKIPFDGKQAHSALYDTERTAELFCA 200 Query: 174 MM 175 M+ Sbjct: 201 MV 202 >gi|290956499|ref|YP_003487681.1| DNA exonuclease [Streptomyces scabiei 87.22] gi|260646025|emb|CBG69116.1| putative DNA exonuclease [Streptomyces scabiei 87.22] Length = 239 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 22/159 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD-- 67 I FD+ETTG D + RI+ +E+ D + + +L G + EA+ +HGIT+ Sbjct: 9 IGFDLETTGTDPREARIVTGAVIEVRDGERIG--HREWLADPGVEIPEEAVAVHGITNAR 66 Query: 68 EFLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 + +P + + + +W +A+NA FD+ ++AEL+R L Sbjct: 67 AVAEGRPADRVADAIADVLVSYW----RTGVPVVAYNAAFDLSLLSAELRRHALPSLRDR 122 Query: 119 ---DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 DP+ +ID +I R ++ + +L ++C YG+ + Sbjct: 123 LGTDPAPVIDPYTIDRSVDRYRRGKRNLEAVCGEYGVAL 161 >gi|239944923|ref|ZP_04696860.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998] gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379] gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 641 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 9/161 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ET+GL ++ DR++ + + + + F L P P +++HG+T E L Sbjct: 22 LVDVETSGLVARRDRVLSVAVITIGPDGEQTGEFSTLLDPG---CDPGPVEVHGLTAERL 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P+F + Q+ +AHNA+FD F+ E R L S+ + TL++ Sbjct: 79 RGAPTFDQVAGRIGAML--QDRVLVAHNAQFDYDFLAHEFARARMW-LPVSQRLCTLALN 135 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 R+ P + + L +L Y + + H AL D+ +L+ + Sbjct: 136 RQVDPPTDDMKLGTLATHY--DVPQQRAHDALDDTRVLAGI 174 >gi|315634736|ref|ZP_07890020.1| ribonuclease T [Aggregatibacter segnis ATCC 33393] gi|315476684|gb|EFU67432.1| ribonuclease T [Aggregatibacter segnis ATCC 33393] Length = 217 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET GL++K D ++E+ A+ L +D + ++ + P G PE++K +G Sbjct: 23 VVIDVETAGLNAKTDALLELAAITLKMDDAGNLVPDQKCHFHIHPFEGANIDPESIKFNG 82 Query: 65 I-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ S + SE + + Q + +AHNA FD GF+ A QR+N Sbjct: 83 IDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNASFDHGFVMAAAQRMNAK 142 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C+ I + H AL D+ ++++ M Sbjct: 143 RNPFHPFSTFDTATLSGFMF--GQTVLVKACQAAKIPFDSQQAHSALYDTERTAELFCYM 200 Query: 175 M 175 + Sbjct: 201 V 201 >gi|317125104|ref|YP_004099216.1| DNA polymerase III subunit epsilon [Intrasporangium calvum DSM 43043] gi|315589192|gb|ADU48489.1| DNA polymerase III, epsilon subunit [Intrasporangium calvum DSM 43043] Length = 590 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 37/221 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 +V D+E+TG I EIGAV++ FQ + P + P + L GITD Sbjct: 21 VVVDLESTGGSPAQCGITEIGAVKVRGGDVIGE-FQTLVNPA--EPIPAFISVLTGITDA 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P S F F +F + +AHNA FD+ F+ A R P ++DTL+ Sbjct: 78 MVADSPRIESAFPAFLEF--AAGSVLVAHNAGFDISFLKAAAVRTGT-PWPGFDVLDTLT 134 Query: 129 IARR---KHPSSRNDLNSLCKRYG--ITISHRSKHGALLDSHLLSDVYIKMM--VGGSQI 181 +AR+ + + L+SL + + T HR+ H D+ DV ++ VG Sbjct: 135 LARQLVTRDEVPNHKLSSLARVFASPTTPDHRALH----DARATVDVLHGLIERVG---- 186 Query: 182 NFGFKTNED---------------RFFKEEKKTVPNISLLK 207 N G T E+ RF + P + L K Sbjct: 187 NLGVHTLEELASYTSRVSPAQRRKRFLADALPHAPGVYLFK 227 >gi|149190366|ref|ZP_01868638.1| ribonuclease T [Vibrio shilonii AK1] gi|148835745|gb|EDL52710.1| ribonuclease T [Vibrio shilonii AK1] Length = 241 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + N + P G EAL+ G Sbjct: 44 VVVDVETAGFNAKTDALLEICAITLTMDDQGNLQPASVLHFHIEPFEGANLEKEALEFTG 103 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINA--ELQRI 113 I D F L+ S E + ++ A +AHNA FD F++A E ++ Sbjct: 104 IRDPFSPLRGAVSEQEALKEIYKVIRKEQKQHDCSRAIMVAHNANFDHSFVSAANERAKL 163 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ +R H AL D+ ++++ + Sbjct: 164 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNREAHSALYDTQKTAELFCR 221 Query: 174 MM 175 ++ Sbjct: 222 IV 223 >gi|262204572|ref|YP_003275780.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis DSM 43247] gi|262087919|gb|ACY23887.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis DSM 43247] Length = 590 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 13/165 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG +++ DR++ + A LDY + + L P P + +H +T + Sbjct: 11 VLVDVETTGTNARRDRVLSL-ATMTLDYDGRVEDEYATLLNPG---CDPGPVHIHNLTRD 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127 L P+F S + +AHNA FD GF+ E +R+ P+D R+ T+ Sbjct: 67 RLHGAPTFDVTMSPLQQMLAGRT--MVAHNATFDHGFLVEEARRLGATLPID-HRLC-TV 122 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++ARR N L +L +G I R+ H A D L++V+ Sbjct: 123 TLARRLQLDVPNVKLGTLATYWG--IRQRAAHDARDDVRTLAEVF 165 >gi|313674131|ref|YP_004052127.1| DNA polymerase iii, epsilon subunit [Marivirga tractuosa DSM 4126] gi|312940829|gb|ADR20019.1| DNA polymerase III, epsilon subunit [Marivirga tractuosa DSM 4126] Length = 465 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + +RI EI A+ L D K + +Q + P R P+ +HGI D+ + Sbjct: 4 IVDIETTGGYAARNRICEI-AIILHDGEKVVKEYQTLINPE-RHIPPQLSAIHGINDQMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P F + E N ++AH+ FD F+ A Q + + L ++ T+ ++ Sbjct: 62 EDAPKFYEEAKTIHELL-EGNI-FVAHSVNFDYSFVKAAFQDLGYE-LKLKKLC-TVRLS 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R+ P ++ L ++C+ GI I+ R H A D+ ++++ +++ Sbjct: 118 RKIFPGLKSYSLGNICENRGIKINDR--HRAFGDAIATAELFTQLV 161 >gi|291295885|ref|YP_003507283.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279] gi|290470844|gb|ADD28263.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279] Length = 267 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 15/182 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTGL + IIE+ + L + +T F+ + P G P +L GI + Sbjct: 90 VVLDIETTGLSPTDHEIIELALIRLENGRRT--VFERLVNP-GVLIPPFISRLTGIRSQD 146 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D ++ E W + NA I NA FD+GF+ +R+ +P ++DT+ Sbjct: 147 VRDAADIYTVLEEAWPLLD--NATLIIQNASFDLGFLQPRFKRLGYRLDNP--VVDTIHW 202 Query: 130 ARRKHPS-SRNDLNSLCKRY---GITISHRSKHGALLDSHLLSDVYIKMMVG----GSQI 181 AR+ P ++ L+SL + I HR+ + ++Y + G SQ+ Sbjct: 203 ARKALPGLTKRGLDSLAWAFDLGPIPARHRAMGDVETTLQVAHEMYYMLTAGHPAPTSQL 262 Query: 182 NF 183 F Sbjct: 263 AF 264 >gi|315146656|gb|EFT90672.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4244] Length = 929 Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V L+ K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCV-LVQEGKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|188533941|ref|YP_001907738.1| ribonuclease T [Erwinia tasmaniensis Et1/99] gi|188028983|emb|CAO96849.1| Ribonuclease T [Erwinia tasmaniensis Et1/99] Length = 218 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 22/201 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+K + ++EI AV L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFDAKTNALLEIAAVTLKMDNDGWLVKDETLHFHVEPFPGSILLPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + S +IF + A +AHNA FD+ F+NA +R + Sbjct: 80 IDPANPLRGAVSEYESLHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C G+T H AL D+ +D++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLV--LGQTVLAKACHAAGMTFDSSQAHSALYDTLQTADLFCEL 197 Query: 175 M-----VGGSQINFGFKTNED 190 + +GG + K++ D Sbjct: 198 VNRWKRLGGWPLPLAAKSDAD 218 >gi|29376872|ref|NP_816026.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Enterococcus faecalis V583] gi|227519901|ref|ZP_03949950.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis TX0104] gi|29344337|gb|AAO82096.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Enterococcus faecalis V583] gi|227072695|gb|EEI10658.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis TX0104] gi|315574388|gb|EFU86579.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0309B] gi|315580138|gb|EFU92329.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0309A] Length = 929 Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|150018035|ref|YP_001310289.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB 8052] gi|149904500|gb|ABR35333.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB 8052] Length = 1446 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 15/152 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDEF 69 V D+ETTG + ++I EIG +++ D K F F+ P +K+ P +++ ITD+ Sbjct: 425 VLDLETTGFSPQTEKITEIGVMKIKD-GKVIDKFSTFVNP--QKSIPMRVVEVTKITDDM 481 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTL 127 +K+ + +F + +F + + +AHNA FD+GF+ NA++ D IDTL Sbjct: 482 VKNAETIDKVFPKLLEFI--EGSVLVAHNADFDIGFLKHNAKVLGYEFD----FTYIDTL 535 Query: 128 SIARRKHPSSRN-DLNSLCKRYGI--TISHRS 156 +A+ P ++ L + K GI ++HR+ Sbjct: 536 GLAQDVFPDYKSYKLGRIAKNLGIKVEVAHRA 567 >gi|326522268|dbj|BAK07596.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 323 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 21/179 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGITDE 68 +VFDIETTG + DRIIE +L N TFQ + P KN+ +HGI+ Sbjct: 124 LVFDIETTGFSRRGDRIIEFAVRDLT--GGKNSTFQTLINPEREVKNA----AVHGISTN 177 Query: 69 FL--KDKPSFSSIFSEFWDF-FNEQNAE----WIAHNAK-FDVGFINAELQRINKDPLDP 120 + D P F + ++ Q A W+AHN K FDV F+ E QR ++ Sbjct: 178 MVCSSDIPRFGEFIPILLQYVWSRQVAGKPVMWVAHNGKTFDVPFLIFEFQRCKQEMPGD 237 Query: 121 SRIIDTLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DTL IA++ S S + +L + Y I + ++ H A+ D L V K+ Sbjct: 238 WLFVDTLPIAKQLVDSNGKKISSASMKNLVEHYKIPVDGKA-HRAMRDVTALCYVLQKL 295 >gi|227553912|ref|ZP_03983959.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis HH22] gi|227176898|gb|EEI57870.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis HH22] Length = 929 Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|157962392|ref|YP_001502426.1| ribonuclease T [Shewanella pealeana ATCC 700345] gi|157847392|gb|ABV87891.1| ribonuclease T [Shewanella pealeana ATCC 700345] Length = 232 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 28/196 (14%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NG 52 + KN+ R +V D+ET G ++K D ++EI AV +L ++T + P G Sbjct: 9 LMKNRFRGYFPVVIDVETAGFNAKTDALLEI-AVSMLKMDDEGVLALDKTLHFNIEPFEG 67 Query: 53 RKNSPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNAEW------IAHNAKF 101 PEAL GI + +K +F IF E Q A +AHNA F Sbjct: 68 ANLEPEALAFTGIDPTSPLRGAVSEKEAFLEIFKEVK---KAQKAAGCHRSIIVAHNAAF 124 Query: 102 DVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 D GF+ ++R + + P P DT ++A L C GI +R H Sbjct: 125 DHGFVTQAIERNALKRTPFHPFATFDTAALAGLA--IGHTVLAKACAMAGIPFDNREAHS 182 Query: 160 ALLDSHLLSDVYIKMM 175 AL D+ ++++ ++ Sbjct: 183 ALYDTERTAELFCLIV 198 >gi|254000498|ref|YP_003052561.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4] gi|253987177|gb|ACT52034.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4] Length = 470 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTG DRI EI + + + +R +Q + P P +L GI D Sbjct: 6 VLLDLETTGATPLVDRITEIALIRFENGQEVSR-WQTLVNPE-TAIPPFIQRLTGIDDGM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F + E + + A AHN +FD GF+ E +RI D +++ T+ + Sbjct: 64 VATAPRFREVAGELLNHL--EGAVLCAHNVRFDHGFLKNEFKRIGIDLRQ--KVLCTVKL 119 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 +R+ +P R + L+S+ +R+ + ++H A+ D L D Sbjct: 120 SRKLYPQHRSHSLDSIIERHSLQCG--ARHRAMGDVVALVD 158 >gi|315604561|ref|ZP_07879624.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310] gi|315313573|gb|EFU61627.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310] Length = 525 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 15/178 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL ++ + I EIGAV + + + F + P G P L GIT Sbjct: 11 VVVDLETTGLGARAE-ITEIGAVRVRE-GRLCEEFSSLVRPVG-PIPPAITALTGITPAM 67 Query: 70 LKDKPSFSSIFSEF--WDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ +++ F W F ++ +AHNA FD+GF+ + P R++DT Sbjct: 68 VRGADPIATVLDRFLTWAGFEAKDPVVLVAHNAPFDIGFLRRAAAACSL-PWPRVRVVDT 126 Query: 127 LSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGG 178 L++AR P RN L ++ +G H AL D+ ++V ++ ++ G Sbjct: 127 LALARLALPRPIVRNHKLATVASYFGTATV--PGHRALGDARATAEVLLGFVDLLAGA 182 >gi|257082037|ref|ZP_05576398.1| DNA polymerase III [Enterococcus faecalis E1Sol] gi|256990067|gb|EEU77369.1| DNA polymerase III [Enterococcus faecalis E1Sol] Length = 929 Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] Length = 330 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 11/196 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRII L + + + P + P + +HG+T + L Sbjct: 27 VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNP---QRDPGPVWIHGLTSDVL 82 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P F + EF + + +AHNA FD I E R ++ R+ T++++ Sbjct: 83 RDAPLFPDVAEEFAARLDGRVL--VAHNAVFDWQMIAREYARAEREAPVRQRLC-TIALS 139 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + P + L SL +G+ + R+ H AL D+ +L++ + ++ + + +E Sbjct: 140 KALDLPLPNHKLESLAAHFGV-VQQRAHH-ALDDARVLAEAFRPSLLAAAAGDVRLPLHE 197 Query: 190 DRFFKE-EKKTVPNIS 204 R E + P I Sbjct: 198 CRPLTEWSDRPAPRIG 213 >gi|114321155|ref|YP_742838.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227549|gb|ABI57348.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] Length = 729 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 10/174 (5%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKL 62 + + +VFD ETTGL ++ D I+ I V +++ + F+ + P GR ++ Sbjct: 532 DALNYVVFDTETTGLSPAEGDEIVSIAGVRMVNGRLLDGERFEQLVNP-GRTIPRSSILF 590 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI D + DKP ++ F F ++ +AHNA FD+ FI + +R +P Sbjct: 591 HGIHDTTVADKPRIETVLPRFHTFVG--DSVLVAHNAAFDMKFIRLKERRCGVRFDNP-- 646 Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++ H ++ + L ++ R G+ ++ ++H A D+ + + V+ ++ Sbjct: 647 VLDTLLLSVFLHDHTADHTLEAIAARLGVEVT--AQHTAWGDALVTARVFACLL 698 >gi|229031267|ref|ZP_04187273.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271] gi|228730025|gb|EEL80999.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271] Length = 315 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P ++ P+ + L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVF 124 Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ KH + + L +L + GI + S H A D + VY K Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|297584389|ref|YP_003700169.1| DnaQ family exonuclease/DinG family helicase [Bacillus selenitireducens MLS10] gi|297142846|gb|ADH99603.1| DnaQ family exonuclease/DinG family helicase [Bacillus selenitireducens MLS10] Length = 935 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 11/156 (7%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R ++ D+ETTG+ K DRII+I A ++L+ + + F ++ N K P ++ L GI Sbjct: 3 RYVILDLETTGVAYDKGDRIIQI-AYQVLEDQEVLKRFSTYI--NYDKPVPAFIQSLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + E LK+ P F + E E A ++AHN +FD+ F+N L+ +ID Sbjct: 60 SGEHLKNAPLFEEVAPEILSDLEE--AYFVAHNVEFDLKFLNESLEDAGYASFQ-GPVID 116 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160 T+ +AR PS + L+ L K + +H + H A Sbjct: 117 TVELARICLPSEDSYRLSDLAK--TVQATHTAPHQA 150 >gi|125624340|ref|YP_001032823.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris MG1363] gi|124493148|emb|CAL98112.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris MG1363] gi|300071124|gb|ADJ60524.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris NZ9000] Length = 277 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKN-SPEALKLHG 64 + +VFD ETTG ++ + II+IGAV+ Y + N+ F L N R S E +L G Sbjct: 4 KYVVFDFETTGFSAQKNEIIQIGAVK---YDENNQELARFNQLVKNQRSYVSTEITQLTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I L ++P+ I +F DF + +AHNA FD+ F+ + ++ R+ Sbjct: 61 IKPADLLNQPTIEEILPDFLDFI--KGHLVVAHNAPFDISFLYQAIIDCAITDVEAFRVY 118 Query: 125 DTLSIARR 132 DTL+ +++ Sbjct: 119 DTLAESKK 126 >gi|167623615|ref|YP_001673909.1| ribonuclease T [Shewanella halifaxensis HAW-EB4] gi|167353637|gb|ABZ76250.1| ribonuclease T [Shewanella halifaxensis HAW-EB4] Length = 231 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 28/196 (14%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NG 52 + KN+ R +V D+ET G ++K D ++EI AV +L ++T + P G Sbjct: 9 LLKNRFRGYFPVVIDVETAGFNAKTDALLEI-AVSMLKMDDEGVLSLDKTLHFNIEPFEG 67 Query: 53 RKNSPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNAEW------IAHNAKF 101 PEAL GI + +K +F IF E Q A +AHNA F Sbjct: 68 SNLEPEALAFTGIDPTSPLRGAVSEKEAFLEIFKEVK---KAQKAAGCHRSIIVAHNAAF 124 Query: 102 DVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 D GF+ ++R + + P P DT ++A L C GI +R H Sbjct: 125 DHGFVTQAIERNALKRTPFHPFATFDTAALAGLA--IGHTVLAKACAMAGIAFDNREAHS 182 Query: 160 ALLDSHLLSDVYIKMM 175 AL D+ ++++ ++ Sbjct: 183 ALYDTERTAELFCLIV 198 >gi|120599313|ref|YP_963887.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1] gi|120559406|gb|ABM25333.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1] Length = 298 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ETTGL+++ D+IIEI A++ S + F+ + P K + + GIT++ Sbjct: 20 IALDAETTGLEAETDKIIEIAAIKFDLLSNDHPVFESLINP-AVKVPRKITNITGITNKM 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 L D+P F+ + + F + +A+NAKFD GF++AE + Sbjct: 79 LVDQPPFAELAQDLKAFIG--DLPIVAYNAKFDKGFLDAEFANVG 121 >gi|167772669|ref|ZP_02444722.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM 17241] gi|167665147|gb|EDS09277.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM 17241] Length = 866 Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 8/158 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFD+E+TG D D I++I AV L F+ FLCP+ + E ++HG +D Sbjct: 511 RVVVFDVESTGADVYTDDIVQIAAVRLSPGGGEAVRFERFLCPSRPVGASE--RVHGFSD 568 Query: 68 EFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 FL + + +F DF + + HN FD+ + L R + DT Sbjct: 569 AFLAENGGAPCAALEDFLDF--SKGCVLVGHNVMFDLTITSQNLARAGSVQTLSNVWYDT 626 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 L I+RR N L+++ G +H H A+ D Sbjct: 627 LDISRRYMKDLPNHKLSTVSAALG--AAHDPSHNAMDD 662 >gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 345 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 14/198 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRI+ G +L + + + P + P + +HG+T L Sbjct: 42 VVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTLVNP---ERDPGPVWIHGLTTGVL 97 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLSI 129 KD P F I E ++ +AHNA FD + E R + + P R + T+++ Sbjct: 98 KDAPLFKDISDELSARLADRVL--VAHNAAFDWSMLAREYARAER--VAPVRQRLCTIAL 153 Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ++ P + L SL +G+ + R+ H AL D+ +L++ + +V + Sbjct: 154 SKELGLPLPNHKLESLAAHFGV-VQERAHH-ALDDARVLAEAFRPSLVAAAGGGVRLPLL 211 Query: 189 EDRFFKE--EKKTVPNIS 204 E R E E P I Sbjct: 212 ECRPLTEWSEPPATPRIG 229 >gi|269794889|ref|YP_003314344.1| exonuclease, DNA polymerase III subunit epsilon family [Sanguibacter keddieii DSM 10542] gi|269097074|gb|ACZ21510.1| exonuclease, DNA polymerase III, epsilon subunit family [Sanguibacter keddieii DSM 10542] Length = 616 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG SK+ I EIGAV++ FQ + P G +L GIT Sbjct: 63 VVVDLETTGGSSKDAGITEIGAVKVRGGEVIGE-FQSLVNP-GHPVPAFIARLTGITTLM 120 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + PS + F +F + +AHNA FD+ F+ A + ++ ++++DT+ + Sbjct: 121 VSSAPSIELVLPSFLEF--ARGTVLVAHNAPFDISFLKAAARSMDLA-WPGNQVLDTVPL 177 Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ARR + + + L +L + TI+ H AL D+ DV Sbjct: 178 ARRVVTRDEAPNHKLGTLAALFRATIT--PDHRALSDARATVDV 219 >gi|326568596|gb|EGE18667.1| ribonuclease T [Moraxella catarrhalis BC7] Length = 232 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 87/211 (41%), Gaps = 24/211 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++ D ++EI V +L + N + P +G P ALK G Sbjct: 22 VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81 Query: 65 ITDE--FLK-----DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN 114 I + F K +K + IF E + HNA FD+GF+NA + R N Sbjct: 82 INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141 Query: 115 K---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P ++DT+S A + L C GI ++ H AL D+ ++++ Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGIEFDNQHAHSALYDAQKTAELF 199 Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPN 202 ++ N TN + + T P+ Sbjct: 200 CHIV----NQNTLLSTNHANLTQNDTPTSPH 226 >gi|108800255|ref|YP_640452.1| hypothetical protein Mmcs_3289 [Mycobacterium sp. MCS] gi|119869383|ref|YP_939335.1| hypothetical protein Mkms_3351 [Mycobacterium sp. KMS] gi|108770674|gb|ABG09396.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119695472|gb|ABL92545.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] Length = 630 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 33/177 (18%) Query: 10 IVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALK 61 +V D+ETTG + +R I EIGAV++ R +V L GR P+ + Sbjct: 31 VVVDLETTGGRATGERPDAITEIGAVKV-------RGGEVLGELATLVDPGRAIPPQIVS 83 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDP 120 L GIT + P S+ F +F + + +AHNA FD+GF+ A ++ P P Sbjct: 84 LTGITTAMVCAAPRIESVLPAFLEF--ARGSVLVAHNAGFDIGFLRAAAEQCALTWPRPP 141 Query: 121 SRIIDTLSIARR-----KHPSSRNDLNSLCK--RYGITISHRSKHGALLDSHLLSDV 170 ++ T+ +ARR + PS R L++L + R T +HR AL D+ DV Sbjct: 142 --VLCTVKLARRVLTRDEAPSVR--LSALAQLFRAKTTPTHR----ALDDARATVDV 190 >gi|294140465|ref|YP_003556443.1| exonuclease [Shewanella violacea DSS12] gi|293326934|dbj|BAJ01665.1| exonuclease [Shewanella violacea DSS12] Length = 232 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 19/200 (9%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALK 61 R N M D+E TGLD +D+I+ IG + + K +R + +G + ++ Sbjct: 44 RANLM---ALDLEMTGLDPNHDQILSIGIIPIEAGMLKLDRAQHKLIRVHG--SVGQSAT 98 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI D L+D S W + +AH+A D+ F+ + R+ +P+ Sbjct: 99 IHGILDRHLQDAIEIEDGIS--WFLAQTRGKVLVAHHAPLDISFLQDAISRVKGEPVT-L 155 Query: 122 RIIDTLSIARRKHPSSRNDLNS------LCK-RYGITISHRSKHGALLDSHLLSDVYIKM 174 IDTL++ RR+ + L + C+ RYG+ I H AL+D+ ++ + Sbjct: 156 LAIDTLAVERRRLLRKQEVLQTGSLRLGACRIRYGLPIY--GAHDALVDALACGELLLAQ 213 Query: 175 MVGGSQINFGFKTNEDRFFK 194 + +Q G E F K Sbjct: 214 ICAIAQ-GEGLTVGELVFIK 232 >gi|325286963|ref|YP_004262753.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489] gi|324322417|gb|ADY29882.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489] Length = 221 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 91/175 (52%), Gaps = 15/175 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + DR++ IGA++L + +F+VF+ + + E ++HGI E Sbjct: 37 VVLDTETTGFSYQEDRMLCIGALKLKNNDINIGDSFEVFIHQDHY--NQETAEIHGILKE 94 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + F + +N+ +AH+A FDV FIN L+R + P ++I+DT + Sbjct: 95 GKTTRLEELETLKLFLAYL--KNSVIVAHHAGFDVTFINMALER-HSLPKLKNKILDTST 151 Query: 129 IARRKHPSS-------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + ++ S L+ L +++ I++ R H AL D+++ + ++K++V Sbjct: 152 LYKKTLIRSNLLVKKEHYSLDELAEKFSISVKDR--HTALGDAYITAIAFLKILV 204 >gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550] gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550] Length = 318 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 9/165 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 72 VSDAPTIEEVLPLFLAFLHAN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ + N L +L + GI + S H A D + VY K Sbjct: 129 AKKYMKQAPNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|312875182|ref|ZP_07735195.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 2053A-b] gi|311089289|gb|EFQ47720.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 2053A-b] Length = 299 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 14/161 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALK-LHGITD 67 ++ D+ETTGLD N+ IIEIGA+ K + + + C + + P A+K L GI+D Sbjct: 132 VIIDLETTGLDYINNNIIEIGAI------KIAKNIEEYSCIVKQNITLPNAIKILTGISD 185 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 LK+ S E F ++ + +N FD+ FIN L+R + L +++ D + Sbjct: 186 AELKNGKDESVAIKELCTFIGDK--ALVGYNVNFDIRFINEALKRNGQSQL-TNKVYDVM 242 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLL 167 +R +N L+++ YGI I + H A+ D ++ Sbjct: 243 KYVKRDKMFLKNYKLDTVLSEYGINI--KVPHRAIEDVKII 281 >gi|294339674|emb|CAZ88034.1| putative protein fusion of DNA polymerase III, epsilon subunit and Excinuclease ABC, C subunit [Thiomonas sp. 3As] Length = 469 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 9/159 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTG + DRI E+ AV ++ + + + P G++ P +L GI D Sbjct: 6 VLLDLETTGSNPVLDRITEV-AVMRVEQGEVVAKWSRLVNP-GQRIPPFIQQLTGIDDAM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+F + E + A +AHN +FD GF+ R D + + T+ + Sbjct: 64 VAGAPAFGEVLPELLAALD--GAVLVAHNVRFDHGFLKQAAAREGVDLR--VKTLCTVRL 119 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R+ +P +R + L+++ +R+G+ + ++H A+ D LL Sbjct: 120 SRKLYPQARGHGLDAIMRRHGLHTT--ARHRAMGDVELL 156 >gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22] gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7) [Streptomyces scabiei 87.22] Length = 613 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 28/230 (12%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ET+GL DR++ + + L F L P+ P + +HG+T + L Sbjct: 21 LVDVETSGLRPGRDRVLSLSILTLDAQGNQTGEFSTLLNPD---CDPGPVHVHGLTADRL 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTLSI 129 P+F I + + + +AHNA+FD F+ E ++ P+ SR + TL++ Sbjct: 78 AGAPAFEEIAPQVGALLSSR--VLVAHNAQFDYDFLAHEFAQVRSWAPV--SRRLCTLAL 133 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 R P++ + L +L YG + H A D +LS + + Q+ Sbjct: 134 NRLVGPATPDLKLGTLAAHYG--VRQEKAHDAQDDVRVLSGILRGSLSAAEQLGLALPVL 191 Query: 189 EDRFFKEEKKTVPNISLLKRDK-------PLF----------TRITKEEL 221 ++ + VP R+ PL TR+++EEL Sbjct: 192 GCPPRQDYRPYVPKTPCAYRNPGRMAPGGPLVQGMKVAITGDTRVSREEL 241 >gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)] gi|256788562|ref|ZP_05526993.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7) [Streptomyces coelicolor A3(2)] Length = 328 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 11/196 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRII L + + + P + P + +HG+T + L Sbjct: 25 VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNP---QRDPGPVWIHGLTSDVL 80 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P F + EF + + +AHNA FD I E R ++ R+ T++++ Sbjct: 81 RDAPLFPDVAEEFAARLDGRVL--VAHNAVFDWQMIAREYARAEREAPVRQRLC-TIALS 137 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + P + L SL +G+ + R+ H AL D+ +L++ + ++ + + +E Sbjct: 138 KALDLPLPNHKLESLAAHFGV-VQQRAHH-ALDDARVLAEAFRPSLLAAAAGDVRLPLHE 195 Query: 190 DRFFKE-EKKTVPNIS 204 R E + P I Sbjct: 196 CRPLTEWSDRPAPRIG 211 >gi|33151799|ref|NP_873152.1| ribonuclease T [Haemophilus ducreyi 35000HP] gi|54036330|sp|Q7VND8|RNT_HAEDU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|33148020|gb|AAP95541.1| ribonuclease T [Haemophilus ducreyi 35000HP] Length = 214 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 23/184 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ D+ET GL++K D ++E+ A+ L+ K + Q F N N+ ++LK Sbjct: 21 VIIDVETAGLNAKTDALLELAAITVKMDQQGYLVPDQKCHFHIQPF--ENANINA-DSLK 77 Query: 62 LHGI-----TDEFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRI 113 +GI + + + +F EQ + +AHNA FD F+ A ++RI Sbjct: 78 FNGIDIHNPLRGAVAEAIAIPEMFKMVRRAIKEQGCQRAVIVAHNATFDQAFLQAAVKRI 137 Query: 114 N--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 N +DP P + DT S+A + + L C+ I + H AL D+ ++++ Sbjct: 138 NAKRDPFHPFAMFDTASLAGLMY--GQTVLVKACQIANIAFDGKQAHSALYDTEKTTELF 195 Query: 172 IKMM 175 M+ Sbjct: 196 CAMV 199 >gi|324327507|gb|ADY22767.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar finitimus YBT-020] Length = 315 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ N ++ P+ + L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYV--NPERSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVF 124 Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ KH + + L +L + GI + S H A D + VY K Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|315173642|gb|EFU17659.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1346] Length = 929 Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|312899802|ref|ZP_07759121.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0470] gi|311293052|gb|EFQ71608.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0470] gi|315146017|gb|EFT90033.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2141] Length = 929 Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|307287736|ref|ZP_07567779.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0109] gi|306501474|gb|EFM70777.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0109] gi|315164835|gb|EFU08852.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1302] Length = 929 Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|257421980|ref|ZP_05598970.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98] gi|257163804|gb|EEU93764.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98] gi|315155308|gb|EFT99324.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0043] Length = 929 Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|256763069|ref|ZP_05503649.1| DNA polymerase III [Enterococcus faecalis T3] gi|257079582|ref|ZP_05573943.1| DNA polymerase III [Enterococcus faecalis JH1] gi|294779459|ref|ZP_06744857.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis PC1.1] gi|307270866|ref|ZP_07552153.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4248] gi|312903707|ref|ZP_07762881.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0635] gi|256684320|gb|EEU24015.1| DNA polymerase III [Enterococcus faecalis T3] gi|256987612|gb|EEU74914.1| DNA polymerase III [Enterococcus faecalis JH1] gi|294453465|gb|EFG21869.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis PC1.1] gi|306512779|gb|EFM81424.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4248] gi|310632899|gb|EFQ16182.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0635] gi|315166434|gb|EFU10451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1341] Length = 929 Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|255972155|ref|ZP_05422741.1| DNA polymerase III [Enterococcus faecalis T1] gi|255963173|gb|EET95649.1| DNA polymerase III [Enterococcus faecalis T1] Length = 929 Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|228928662|ref|ZP_04091698.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229123127|ref|ZP_04252334.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201] gi|228660421|gb|EEL16054.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201] gi|228830981|gb|EEM76582.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 315 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ N ++ P+ + L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYV--NPKRPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ KH + + L +L + GI + S H A D + VY K Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|228986699|ref|ZP_04146829.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773030|gb|EEM21466.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 315 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P ++ P+ + L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ KH + + L +L + GI + S H A D + VY K Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|71667552|ref|XP_820724.1| exonuclease [Trypanosoma cruzi strain CL Brener] gi|70886080|gb|EAN98873.1| exonuclease, putative [Trypanosoma cruzi] Length = 223 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 53/218 (24%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVE-------LLDYSKTNRTFQVFLCPNGRKNSPEA 59 M I D+ETTG ++ D ++ IGAVE L + R+F + P+ + +S +A Sbjct: 1 MSAICVDLETTGFSAQRDDVVSIGAVELRWDGTTLQQWVLGARSFFRTVRPS-KPSSHQA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFF------------NEQN---------------- 91 +HG++ E L+D P + S+F F E+N Sbjct: 60 EAVHGLSFEMLRDAPPLEDVISDFAAFLIQLDGNLPQSGQTEENYRAKPGDLSAKKRCTA 119 Query: 92 ----------AEWIAHNAKFDVGFINAELQ----RINKDPLDPSRIIDTLSIARRKHPSS 137 IAHNA FD F+ + R+ D P + T S+ R + Sbjct: 120 ATTAGCVLTLPPVIAHNANFDASFLQRAVSRAGWRVVWDEYAP--LTCTQSMFRALYSHQ 177 Query: 138 RNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKM 174 DL+ C+ G+ S R +H AL D+ L +++++ Sbjct: 178 AADLSRACQFCGVDTSGRDERHDALHDAQLCGRLFLRL 215 >gi|94501331|ref|ZP_01307852.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65] gi|94426602|gb|EAT11589.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65] Length = 738 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 85/164 (51%), Gaps = 11/164 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 ++ D+ETTG + R+ E+G V++L+ + +Q + P ++ P+++ +L GI++E Sbjct: 574 VIVDVETTGGRKEQHRVTEVGMVKVLNGEIVDE-WQSLINP--MRHIPQSITRLTGISNE 630 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P F + E +F + ++AHN FD GF +E +R+ + P + T+ Sbjct: 631 MVSNAPVFDDVADEIAEFC--AGSVFVAHNVNFDYGFFRSEFERLGRRFHAPK--LCTVQ 686 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++R+ P S L LC + I + H AL D+ + V+ Sbjct: 687 MSRKYLPGHSSYSLGKLCA--ALDIDLENHHRALDDAKAAAHVF 728 >gi|226325409|ref|ZP_03800927.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758] gi|225206152|gb|EEG88506.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758] Length = 231 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 11/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGLD + IIEIGA+++ D K F F+ P + SP L GIT+E Sbjct: 6 VCFDLETTGLDPLYNEIIEIGALKVRD-GKVAERFMEFIHPQ-EEISPMITNLTGITNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128 + + ++ S+F +F ++ I HN FD F+ + + L + IDT Sbjct: 64 VANARPADAVISDFLEFC--EDDVLIGHNVGFDYSFMKSGASNLG---LTFEKFGIDTFK 118 Query: 129 IARR-KHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166 IA+R L+SLC+ Y I +HR+ + AL + L Sbjct: 119 IAQRTLKSLPSKSLSSLCEYYQIENKAAHRAYYDALATAKL 159 >gi|114562633|ref|YP_750146.1| ribonuclease T [Shewanella frigidimarina NCIMB 400] gi|122300177|sp|Q084K7|RNT_SHEFN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|114333926|gb|ABI71308.1| RNAse T [Shewanella frigidimarina NCIMB 400] Length = 221 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++ D ++EI AV LL + +RT + P G P AL + Sbjct: 20 VVIDVETAGFNANTDALLEI-AVSLLKMNSDGVIVLDRTLHFNIEPFEGANLEPAALAFN 78 Query: 64 GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113 GI T+ + +K +F IF E + +AHNA FD+GF+N ++R + Sbjct: 79 GIDPTNPLRGAVDEKVAFLEIFKEVKKAQKAADCHRSIIVAHNAAFDLGFVNKAIERNGL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++A L CK GI ++ H AL D+ ++++ Sbjct: 139 KRSPFHPFASFDTATLAGLA--IGHTVLAKACKMAGIDFDNKEAHSALYDTERTAELFCL 196 Query: 174 MM 175 ++ Sbjct: 197 IV 198 >gi|315504521|ref|YP_004083408.1| DNA polymerase iii, epsilon subunit [Micromonospora sp. L5] gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5] Length = 584 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG I EIGAV++ + + P G P L GIT Sbjct: 33 VVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQAM 90 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P + F +F + +A +AHNA +DVGF+ A + +P R++DT ++ Sbjct: 91 LLPAPPIEQVLPSFLEFIS--DAVLVAHNAPYDVGFLKAACAKHGYRWPNP-RVLDTAAL 147 Query: 130 ARR 132 ARR Sbjct: 148 ARR 150 >gi|169627433|ref|YP_001701082.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus ATCC 19977] gi|169239400|emb|CAM60428.1| DNA polymerase III, epsilon subunit (DnaQ) [Mycobacterium abscessus] Length = 327 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ET+G R+I + A+ + D T V L G P +HG+T E Sbjct: 15 VVVDLETSGFQPGRARVISVAALAM-DADGTITDSVVSLLNPGVDPGPT--HVHGLTPEM 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ +P FS I + + +AHN FD F+ AE + + + L ++ T+ + Sbjct: 72 LEGQPEFSDIAPDLIALLRGRTL--VAHNVGFDYSFLAAEAELVGAE-LPTEAVMCTVEL 128 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 RR + N L +L +G + H A D+ +L++V K++ Sbjct: 129 TRRLELDTPNLRLETLAAHWG--VEQLKAHDAYDDARVLAEVLPKVL 173 >gi|323481332|gb|ADX80771.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis 62] Length = 929 Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|315150174|gb|EFT94190.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0012] Length = 929 Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|257416585|ref|ZP_05593579.1| DNA polymerase III [Enterococcus faecalis AR01/DG] gi|257158413|gb|EEU88373.1| DNA polymerase III [Enterococcus faecalis ARO1/DG] Length = 929 Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|256853717|ref|ZP_05559082.1| DNA polymerase III [Enterococcus faecalis T8] gi|307291048|ref|ZP_07570934.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0411] gi|256710660|gb|EEU25703.1| DNA polymerase III [Enterococcus faecalis T8] gi|306497897|gb|EFM67428.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0411] gi|315030986|gb|EFT42918.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4000] Length = 929 Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|256617168|ref|ZP_05474014.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|307277210|ref|ZP_07558314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2134] gi|256596695|gb|EEU15871.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|295113409|emb|CBL32046.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus sp. 7L76] gi|306506140|gb|EFM75306.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2134] Length = 929 Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|229549451|ref|ZP_04438176.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis ATCC 29200] gi|256956656|ref|ZP_05560827.1| DNA polymerase III [Enterococcus faecalis DS5] gi|257419833|ref|ZP_05596827.1| DNA polymerase III [Enterococcus faecalis T11] gi|300861259|ref|ZP_07107346.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus faecalis TUSoD Ef11] gi|312953414|ref|ZP_07772254.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0102] gi|229305688|gb|EEN71684.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis ATCC 29200] gi|256947152|gb|EEU63784.1| DNA polymerase III [Enterococcus faecalis DS5] gi|257161661|gb|EEU91621.1| DNA polymerase III [Enterococcus faecalis T11] gi|300850298|gb|EFK78048.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus faecalis TUSoD Ef11] gi|310628623|gb|EFQ11906.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0102] gi|315152082|gb|EFT96098.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0031] gi|315159114|gb|EFU03131.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0312] gi|315170323|gb|EFU14340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1342] gi|327535661|gb|AEA94495.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis OG1RF] Length = 929 Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|42782681|ref|NP_979928.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987] gi|42738607|gb|AAS42536.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus ATCC 10987] Length = 315 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ N ++ P+ + L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYV--NPERSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ KH + + L +L + GI + S H A D + VY K Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|196034235|ref|ZP_03101645.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W] gi|228947225|ref|ZP_04109519.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195993309|gb|EDX57267.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W] gi|228812472|gb|EEM58799.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 315 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ N ++ P+ + L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYV--NPKRPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ KH + + L +L + GI + S H A D + VY K Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|304403858|ref|ZP_07385520.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus YK9] gi|304346836|gb|EFM12668.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus YK9] Length = 244 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 10/170 (5%) Query: 10 IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67 IVFD+ETTG N D II GAV L+ + + N ++ P + +L GIT+ Sbjct: 61 IVFDLETTGFYPYNGDEIISFGAV-LVKGDEIFEDVSFYSLVNPKRRIPMHITQLTGITN 119 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ P + +F +F + +AH + D F+NA L R +K L R++DT+ Sbjct: 120 EMVEGAPDLMQVLHDFMEFVGRRIL--LAHGSGHDKQFLNAALWRTSKVNLT-HRLLDTM 176 Query: 128 SIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ P + L+ L + I I+ R H AL DS + + +++ + Sbjct: 177 MVAKWLEPKRPDGYGLDELLESANIPIADR--HHALKDSIMTAKLWMAYL 224 >gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264] gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24] gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis BMB171] gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus B4264] gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24] gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis BMB171] Length = 315 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A++ KH + + L +L + GI + S H A D + VY K + Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQKCV 169 >gi|330446493|ref|ZP_08310145.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490684|dbj|GAA04642.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 218 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L +D + K T + P G + EAL+ +G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVAPFEGAILNKEALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFW-DFFNEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD F+ A +R + Sbjct: 80 IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C+ I +R H AL D+ ++++ + Sbjct: 140 KRNPFHPFATFDTAALSGLAF--GQTVLAKACQTANIPFDNREAHSALYDTERTAELFCE 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|89094681|ref|ZP_01167617.1| ribonuclease T [Oceanospirillum sp. MED92] gi|89081027|gb|EAR60263.1| ribonuclease T [Oceanospirillum sp. MED92] Length = 209 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 22/201 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S+ D ++EI AV L + +++F+ + P G AL G Sbjct: 11 VVVDVETAGFNSRTDALLEIAAVTLTMDENGFLMIDQSFEAQVEPFEGANLEQSALDFTG 70 Query: 65 ITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I E + ++ + IF A + HNA FD GF+NA R I Sbjct: 71 IDPYDPDREAVPERDAMEEIFKPVRKAIKAHGCKRAVLVGHNASFDQGFVNAAANRADIK 130 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++ + L C+ GI + H AL D+ ++++ + Sbjct: 131 RNPFHPFSTFDTATLGGLAF--GQTVLARACQVAGIEFDGKQAHSALYDTMKTAELFCLI 188 Query: 175 M-----VGGSQINFGFKTNED 190 + +GG ++ F+ +E+ Sbjct: 189 VNRWKELGGWEMAESFQDDEE 209 >gi|315161735|gb|EFU05752.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0645] Length = 929 Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|315035644|gb|EFT47576.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0027] Length = 929 Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|315032870|gb|EFT44802.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0017] Length = 929 Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|257087406|ref|ZP_05581767.1| DNA polymerase III [Enterococcus faecalis D6] gi|256995436|gb|EEU82738.1| DNA polymerase III [Enterococcus faecalis D6] gi|315025444|gb|EFT37376.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2137] Length = 929 Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|256963550|ref|ZP_05567721.1| DNA polymerase III [Enterococcus faecalis HIP11704] gi|307271490|ref|ZP_07552762.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0855] gi|256954046|gb|EEU70678.1| DNA polymerase III [Enterococcus faecalis HIP11704] gi|306511762|gb|EFM80760.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0855] Length = 929 Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|255975219|ref|ZP_05425805.1| DNA polymerase III [Enterococcus faecalis T2] gi|307285838|ref|ZP_07565972.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0860] gi|255968091|gb|EET98713.1| DNA polymerase III [Enterococcus faecalis T2] gi|306502599|gb|EFM71866.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0860] Length = 929 Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|24373798|ref|NP_717841.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] gi|24348190|gb|AAN55285.1|AE015666_9 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] Length = 212 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 7/168 (4%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL ++ R IEIGAV L++ + F + P R N+ GI+++ Sbjct: 14 VVLDFETSGLSPNQGARAIEIGAV-LIEQGQITTRFSELMNPGFRINA-FIEDYTGISNQ 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + F +F + + +AHNA FD F++AE I + +L Sbjct: 72 MLAHAAPCAEVMARFAEFIGKHH--LVAHNAAFDQRFLDAEFAHIGHQ--YSGQFGCSLL 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +ARR +P + N + R+ ++ + H AL D+ + ++++M+ Sbjct: 128 LARRLYPEAINHQLATLVRHKQLPNNGTFHRALADAEMTGHLWLRMLA 175 >gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L] gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L] Length = 315 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPVFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|71907013|ref|YP_284600.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] gi|71846634|gb|AAZ46130.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] Length = 204 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 11/163 (6%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D ETTGL ++ DR EI AV +L+ K +Q + N P + +L GI++ Sbjct: 6 VIDFETTGLSPAQGDRATEIAAV-ILENGKVVDRYQSLM--NAGVRIPSFIEQLTGISNA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + + E DF + +AHNA FD F +AE+ RIN +L Sbjct: 63 MIRSAPPAAQVMREVSDFVG--DIPLVAHNASFDCKFWDAEVARINLQRCQ--EFACSLL 118 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +ARR P + + L +L + + ++ R+ H AL D+ + + + Sbjct: 119 LARRLMPLAPSHKLGALIEFAKLPVAGRA-HRALADAEMAASL 160 >gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] Length = 303 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F ++ +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 72 VSDAPTIEEVLPLFLAFLHKN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 315 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|229117071|ref|ZP_04246451.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3] gi|228666360|gb|EEL21822.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3] Length = 315 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al Hakam] gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus NVH0597-99] gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB108] gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB102] gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42] gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1] gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al Hakam] gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB108] gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus NVH0597-99] gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB102] gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1] gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42] Length = 315 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVLL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Nocardia farcinica IFM 10152] gi|54015198|dbj|BAD56568.1| putative DNA polymerase III subunit [Nocardia farcinica IFM 10152] Length = 598 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 14/166 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + D I EIGAV++ + F + P GR P +++ GIT Sbjct: 28 VVVDLETTGTSPEGDAITEIGAVKVRG-GEVLGEFATLVNP-GRAIPPAVVQVTGITTAL 85 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P ++ F +F A +AHNA+FD P + ++ T+ + Sbjct: 86 VYAAPRIEAVLPGFLEF--AAGAVLVAHNARFDT-AFLRAAAARCALPWPDAPVLCTVKL 142 Query: 130 ARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ARR + PS R L SL + G S + H AL D+ DV Sbjct: 143 ARRVLGRDEAPSVR--LASLARLLG--ASTQPTHRALDDARATVDV 184 >gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2] gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876] gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876] gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2] Length = 318 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 72 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 318 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 72 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|229098054|ref|ZP_04229002.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29] gi|228685245|gb|EEL39175.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29] Length = 318 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNYR 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 72 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVFL 128 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH1134] gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185] gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH1134] gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185] Length = 315 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|302869008|ref|YP_003837645.1| DNA polymerase III subunit epsilon [Micromonospora aurantiaca ATCC 27029] gi|302571867|gb|ADL48069.1| DNA polymerase III, epsilon subunit [Micromonospora aurantiaca ATCC 27029] Length = 584 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG I EIGAV++ + + P G P L GIT Sbjct: 33 VVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQAM 90 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P + F +F + +A +AHNA +DVGF+ A + +P R++DT ++ Sbjct: 91 LLPAPPIEQVLPSFLEFVS--DAVLVAHNAPYDVGFLKAACAKHGYRWPNP-RVLDTAAL 147 Query: 130 ARR 132 ARR Sbjct: 148 ARR 150 >gi|170733343|ref|YP_001765290.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3] gi|169816585|gb|ACA91168.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia MC0-3] Length = 212 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL DR EI + L D +R FQ + GR+ + + L GIT++ Sbjct: 13 VLDFETTGLSPNLGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPSDVVALTGITNDM 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P S + E F + +AHNA FD F +EL + T+ + Sbjct: 71 IATAPPASEVMKEAAAFVGKHAV--VAHNAGFDKRFWQSELGMLGMSA--DHAFACTMLV 126 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR +P +R+ L+SL + + + R+ H A++D+ + ++ ++ Sbjct: 127 ARRIYPDARSHRLSSLAEMLRLPQTGRA-HRAMVDAEMAGHLWCRL 171 >gi|189501071|ref|YP_001960541.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1] gi|189496512|gb|ACE05060.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1] Length = 180 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 25/172 (14%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLH 63 R + D+ETTGL + DR+IE+ AV ++ N + C N+P K+H Sbjct: 12 RVVAVDVETTGLSPLRGDRVIEVAAVAIV-----NGVIEEHFCCLINVNAPIPTVVQKIH 66 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E L + +++ EF +F IAHNA FD+ FI ELQ + L+ S+ Sbjct: 67 GITPELLAGEKPPEAVWPEFLNFIGSNI--LIAHNAPFDISFIRNELQLLGLSLLNGSQC 124 Query: 124 IDTLSIARRKHPS---------SRNDLNSLCKRYGITISHRSKHGALLDSHL 166 TL+ +R+K P +R+ L + K GI + HR+ ALL + + Sbjct: 125 --TLAFSRKKFPQLKSHKLDNVARHVLGGMPK--GIKL-HRASGDALLTAMI 171 >gi|218904738|ref|YP_002452572.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH820] gi|218538798|gb|ACK91196.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH820] Length = 315 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ N ++ P+ + L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYV--NPKRPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + N L +L + GI + S H A D + VY K Sbjct: 125 LAKKYMKHAPNYKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|163848613|ref|YP_001636657.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus J-10-fl] gi|222526548|ref|YP_002571019.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl] gi|163669902|gb|ABY36268.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus J-10-fl] gi|222450427|gb|ACM54693.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl] Length = 278 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 7/177 (3%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTGL+ RI E+ + + R + P R+ P+A +++G+ Sbjct: 16 IFFDVETTGLEIQAGHRICEVAMLRWEHGQEVGR-INTLINPE-RELDPQAAQINGLQPA 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + P F+ I + QNA IAHN FD F+N EL R P +DTL Sbjct: 74 ELNNAPLFTDIAPQVVQL--SQNAVRIAHNLPFDESFLNMELCRAGYPPFT-GPALDTLE 130 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 +ARR + L +L +G+ +L L D ++ M+ I G Sbjct: 131 LARRLGIRRGSLSLAALATTFGLPAPTHRAMDDVLTLRALFDHFVNEMISFGIITLG 187 >gi|332523978|ref|ZP_08400230.1| exonuclease DnaQ family/helicase DinG family [Streptococcus porcinus str. Jelinkova 176] gi|332315242|gb|EGJ28227.1| exonuclease DnaQ family/helicase DinG family [Streptococcus porcinus str. Jelinkova 176] Length = 820 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 10/165 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+E T S + RII+IG V +++ K +FQ + P+ K S L GITD+ L Sbjct: 10 VIDLEATNAGS-DARIIQIGIV-IVEDKKIINSFQTDINPHS-KLSEHIKSLTGITDQQL 66 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P FS + E ++ ++ ++AHN KFD ++ L D L P +DT+ +A Sbjct: 67 ATAPEFSQVAGEIFELI--KDCVFVAHNVKFDANLLSEALFFEGFDLLTPR--VDTVELA 122 Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + P+ + +L L K + +SH H A+ D+ + ++IK+ Sbjct: 123 QVFFPNLEKYNLGHLAKNMDLNLSH--AHTAISDALATAKLFIKI 165 >gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 315 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|160901638|ref|YP_001567219.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95] gi|160359282|gb|ABX30896.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95] Length = 187 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 9/178 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67 + D ETTGL+ + DRIIEI A+ + D K N + N P E K H + + Sbjct: 9 LALDFETTGLNPELGDRIIEIAAIPIYD-KKINFKYAFHTLVNPNIFIPGEVSKFHKLNN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + PS S +F F ++ ++ ++HN K D+ F++ + +D + IDTL Sbjct: 68 QDISNAPSLSEVFPRFKEYIDDSII--VSHNVKMDLRFLDIAAKESGMFSID-NYYIDTL 124 Query: 128 SIARRKHPSSRNDLNSLCKRY--GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 I++ +L L K++ GI HR+ AL + L YIK+ + INF Sbjct: 125 EISKYYFDKGPYNLEFLSKKFNLGIKQFHRAWDDALSTAKLFQK-YIKLFSFEAIINF 181 >gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676] gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676] Length = 318 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 72 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|240146656|ref|ZP_04745257.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] gi|257201200|gb|EEU99484.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] Length = 226 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 15/180 (8%) Query: 3 RKNKMRK------IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 RK K R+ +++D+ETTG+ S D +IEI AV++ + K F + P GR Sbjct: 5 RKGKQRREYVRDYVLYDLETTGISSLYDEVIEISAVKVRN-GKIVDEFSELVNP-GRPIP 62 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINK 115 A ++ I+D+ +++ SF + EF F + HN A FD+ F+ + ++ Sbjct: 63 YAASSVNNISDKMVENARSFEKVLPEFLAFAGDD--VLAGHNIAGFDMKFLYRDCEKYFG 120 Query: 116 DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L + IDTL+IA+ P ++ L+ L + YG IS + H AL D + V+ M Sbjct: 121 QTL-TNDYIDTLAIAKLCFPEWKHRKLSDLAEHYG--ISTKGAHRALADCRMNQQVFELM 177 >gi|307545334|ref|YP_003897813.1| ribonuclease T [Halomonas elongata DSM 2581] gi|307217358|emb|CBV42628.1| ribonuclease T [Halomonas elongata DSM 2581] Length = 221 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 19/183 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D I+EI AV L + N T+ + P G AL G Sbjct: 20 VVVDLETGGFNAKGDAILEIAAVTLTMDPEGNLMPDATYAYHVTPFEGANVEQSALDFTG 79 Query: 65 I-TDEFLK------DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR-- 112 I D+ L+ + + IF A + HNA FD GF+NA ++R Sbjct: 80 IRLDDPLRRQVAVSEAEALGEIFRPVRKAIKAHGCTRAILVGHNAAFDHGFLNAAVERCA 139 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I ++P P DT S+A + + L C+ GI + + H A D+ ++++ Sbjct: 140 IKRNPFHPFSSFDTASLAGLIY--GQTVLARACRAAGIEFDNGAAHSARYDTERTAELFC 197 Query: 173 KMM 175 M+ Sbjct: 198 AMI 200 >gi|257090540|ref|ZP_05584901.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188] gi|256999352|gb|EEU85872.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188] gi|315578691|gb|EFU90882.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0630] Length = 929 Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 K+K V D+ETTG D +DRII+ G V + D K F + PN + P+ ++ L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQD-GKIIANFATDVNPN--QVVPKQIQSL 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL P+ Sbjct: 65 TGISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYDFLARELVRCGTPPLTIPA 122 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + Sbjct: 123 --IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLL 170 >gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222] gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222] Length = 318 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 72 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|218898703|ref|YP_002447114.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus G9842] gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus G9842] Length = 315 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|154174963|ref|YP_001408508.1| DNA polymerase III subunit epsilon [Campylobacter curvus 525.92] gi|112803051|gb|EAU00395.1| nickel transport permease component NikD [Campylobacter curvus 525.92] Length = 273 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 17/196 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 + DIET+G + +IIEIGA+++ + + R F+ F+ PE + +L GI+ Sbjct: 78 IVDIETSG-GITSGQIIEIGALKIKNGVEIGR-FESFV---DAPFVPENITQLTGISQSD 132 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L PS S+ F F + ++AHN FD GFI+ L I L +R + T+ + Sbjct: 133 LTGAPSLKSVLERFKIFLG--TSVFVAHNVNFDYGFISQSLSNIGLGML-LNRKLCTIDL 189 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 +RR S + L SL + GI +H H AL D+ +++ +K+ + S++ F ++ E Sbjct: 190 SRRTIASQKYGLGSLKELLGINNTH---HRALNDAIAATEI-LKICI--SRLPFSIQSVE 243 Query: 190 DRFFKEEKKTVPNISL 205 D KT P++ L Sbjct: 244 DLI--NFSKTAPSMKL 257 >gi|325696784|gb|EGD38672.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK160] Length = 814 Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 91/173 (52%), Gaps = 12/173 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-L 62 +N + V D+E TG S +II+IG V L++ +T++ + P+ + E +K L Sbjct: 3 QNDYKYAVVDLEATGTGS-GAKIIQIGIV-LIENGSITKTYETDVNPHEELD--EHIKEL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 59 TGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTPR- 115 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 116 -VDTVELAQVFYPTFDKYSLGNLCDL--LDISLENAHTALADAQATAQLFLKI 165 >gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15] gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15] Length = 318 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 72 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|307297316|ref|ZP_07577122.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916576|gb|EFN46958.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 182 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 24/179 (13%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS---PEAL-- 60 M +V D ETTG++ + ++IE+ V + ++ LC + +S PE + Sbjct: 1 MEFVVIDTETTGMNPYRGAKLIEVAGVRVKNWE---------LCRDDFFDSLIDPECIIP 51 Query: 61 ----KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 L GI++ +KDK + + F+ F +A + HNA FD+ FIN + Sbjct: 52 IAITALTGISNLTVKDKSTVCDVLRGFYSF--AGDATLVIHNAPFDLSFINFYGDKCGLG 109 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L ++ IDT+ +++ RN+L+ L R GI S+H AL D+ ++ ++ M+ Sbjct: 110 KLR-NQFIDTIEVSKAVFRYGRNNLDILLARLGII--PESRHRALGDALATAEAFVAML 165 >gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pakistani str. T13001] Length = 318 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 72 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|229104149|ref|ZP_04234821.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28] gi|228679166|gb|EEL33371.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28] Length = 315 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|229075504|ref|ZP_04208492.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18] gi|228707600|gb|EEL59785.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18] Length = 318 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNYR 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 72 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVFL 128 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 129 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|229179896|ref|ZP_04307242.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W] gi|228603577|gb|EEK61052.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W] Length = 315 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + L+P +++IDT+ Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL--LEPKNKVIDTVF 124 Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ KH + + L +L + GI + S H A D + VY K Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|332307350|ref|YP_004435201.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174679|gb|AEE23933.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5] Length = 211 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G +++ D ++E+ A+ +D Y ++TF + P G AL+ +G Sbjct: 18 VIVDVETAGFNAQTDALLEVAAITTKMDADGYLTPDKTFHYHVVPFEGANLEKAALEFNG 77 Query: 65 I---------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 I DE K I E D + Q + +AHNA FD+GFINA ++R I Sbjct: 78 IDPWCALRGALDETEVMKDLCKQIRKEQKDA-DCQRSVMVAHNAAFDLGFINAAIERSKI 136 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++A + L C+ I+ H AL D+ +++Y Sbjct: 137 KRTPFHPFVSFDTTTLAGLA--LGQTVLVKACQAANISFDQSEAHSALYDTQKTAELYCY 194 Query: 174 MM 175 ++ Sbjct: 195 IV 196 >gi|260102980|ref|ZP_05753217.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] gi|260083211|gb|EEW67331.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] gi|328464560|gb|EGF35931.1| DNA polymerase III [Lactobacillus helveticus MTCC 5463] Length = 317 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 8/156 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTGL DRI E+G V++ + ++ + P K KL+GIT+E L Sbjct: 35 MLDVETTGLSPFRDRITELGGVKVRNGQIVDQYTNLVKFPKNNKVPAFITKLNGITEEQL 94 Query: 71 KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+ +I EF +F + I +N FD+ F+ Q+ N P+ + +D L Sbjct: 95 TNEGIPAEQAI-KEFREFIGDDTI--IGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVLR 150 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P N L +R G I+ +H L DS Sbjct: 151 LARVYYPRQHNRLIDCMQRAG--IAQVEQHHGLADS 184 >gi|194333861|ref|YP_002015721.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM 271] gi|194311679|gb|ACF46074.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM 271] Length = 232 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 18/185 (9%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFL-CPNGRKNSPEALKLHG 64 +R +VFD ETTG D D +I IGAV +++ S + +F+V + C R +A+ +HG Sbjct: 43 VRYVVFDTETTGFDLSRDNVISIGAVAVMNGSIDISDSFEVLIRCD--RVGDGDAVSVHG 100 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + L + F ++ + + +A +A FD+ +NA ++R L + ++ Sbjct: 101 LLRRDLVGGCNEREALDGFLNYIGD--SILVAQHAGFDIAMMNAIMRRHYHMEL-LNDVL 157 Query: 125 DTLSIARR---------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT S+A+R H S L+SL +RY I + R H + D+ L + ++ +++ Sbjct: 158 DTASLAKRLEKGPYYNLAHKSGEYRLDSLLERYHIRLYDR--HTSAGDAFLTAQLFQRLL 215 Query: 176 VGGSQ 180 + Sbjct: 216 YSAAS 220 >gi|163848275|ref|YP_001636319.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus J-10-fl] gi|222526189|ref|YP_002570660.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl] gi|163669564|gb|ABY35930.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus J-10-fl] gi|222450068|gb|ACM54334.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl] Length = 232 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 17/176 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGLD+++D +I +GAV + + + + + P R+ S E++++H +T Sbjct: 39 VIDVETTGLDTRHDALIAVGAVNIENGRVLLKQTWYSLIKPPPDREPSVESIRVHHLTPA 98 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----RINKDPLDPSRII 124 L++ P + +E + H A+ DV FINA L+ ++ + LD +R+ Sbjct: 99 ELQNAPPAEEVLAEL--LRRIAGRVLVVHVAQVDVRFINAALKPFGGKLRRPILDTARLA 156 Query: 125 DTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 TL + R P +L L G+ + ++H AL D+ + ++I Sbjct: 157 LTLHMNARWLGEQPHDMPDPAIELRGLATALGLPVY--AQHNALNDAVTTAQLFIA 210 >gi|322822112|gb|EFZ28257.1| exonuclease, putative [Trypanosoma cruzi] Length = 271 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 90/218 (41%), Gaps = 53/218 (24%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVE-------LLDYSKTNRTFQVFLCPNGRKNSPEA 59 M I D+ETTG ++ D I+ IGAVE L + R+F + P+ + +S +A Sbjct: 49 MSAICVDLETTGFSAQCDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRPS-KPSSHQA 107 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFF------------NEQN---------------- 91 +HG++ E L+D P + S+F F E+N Sbjct: 108 EAVHGLSFEMLRDAPPLEDVISDFAAFLIQLDDNLAQSGQTEENYCAKPGDLSAKKRCTA 167 Query: 92 ----------AEWIAHNAKFDVGFINAELQ----RINKDPLDPSRIIDTLSIARRKHPSS 137 IAHNA FD F+ + R+ D P + T S+ R + Sbjct: 168 ATTAGCVLTLPPVIAHNANFDASFLQRAVSGAGWRVVWDEYAP--LTCTQSMFRALYSHQ 225 Query: 138 RNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKM 174 DL+ C+ G+ S R +H AL D+ L +++++ Sbjct: 226 AADLSRACQFCGVDTSGRDERHDALHDAQLCGRLFLRL 263 >gi|225352024|ref|ZP_03743047.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157271|gb|EEG70610.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 196 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 11/160 (6%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITD 67 IV D ETTGL K ++IEIGAV++ + + Q+ N ++ P + L GI D Sbjct: 23 IVIDTETTGLSVRKGAKLIEIGAVKIRNDELVDEFDQLI---NPFEHVPSRITGLTGIDD 79 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRINKDPLDPSRIID 125 L KP + EF + ++ A +AHNA FD+ F++ +L +D +D Sbjct: 80 GMLLGKPDVREVMDEFARWCSD-TAVVMAHNASFDMSFLDNAVQLAYSERDARFAHHFVD 138 Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164 TL ++RR HP R + +++L Y I+ +H AL D+ Sbjct: 139 TLDLSRRLHPEKRSHKVSTLIVDY--HIADMEEHRALSDA 176 >gi|254247914|ref|ZP_04941235.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|124872690|gb|EAY64406.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] Length = 212 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL DR EI + L D +R FQ + GR+ + + L GIT++ Sbjct: 13 VLDFETTGLSPNLGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPSDVVALTGITNDM 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P S + E F + +AHNA FD F +EL + T+ + Sbjct: 71 IATAPPASEVMKEAAAFVGKHAV--VAHNAGFDKRFWQSELGMLGMSA--DHAFACTMLV 126 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR +P +R+ L+SL + + + R+ H A++D+ + ++ ++ Sbjct: 127 ARRIYPDARSHRLSSLAEMLRLPQTGRA-HRAMVDAEMAGHLWCRL 171 >gi|119026003|ref|YP_909848.1| putative DNA polymerase III epsilon subunit [Bifidobacterium adolescentis ATCC 15703] gi|118765587|dbj|BAF39766.1| putative DNA polymerase III epsilon subunit [Bifidobacterium adolescentis ATCC 15703] Length = 207 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 73/163 (44%), Gaps = 11/163 (6%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N V D ETTGL +K DR IEIG V + + + + S A +H Sbjct: 2 NSQGYAVVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLIHVD---RSVGASWVH 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSR 122 IT L P F I E D + ++AHN FD F+ AE R+ P+D S Sbjct: 59 HITARELLHAPDFEGIAHELRDLLAGRV--FVAHNVSFDSRFLLAEYSRMGASIPVDQST 116 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 ++ T+ ++R R L C+ +G I++ H AL D+H Sbjct: 117 MLCTMKLSRSL--IGRGKLADCCEYFG--IANEDAHSALSDAH 155 >gi|291531551|emb|CBK97136.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium siraeum 70/3] Length = 361 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 13/151 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 + DIETTGL ND IIEIGA+ + D N+ F L + S ++ GITD+ Sbjct: 11 IVDIETTGLSPDNDNIIEIGALRVRD----NKIVADFSQLIKASKPLSKTISQITGITDD 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D S+F F + N + HN FD FI+ + D + + DTL+ Sbjct: 67 MLADAKELDDTLSDFLRFVD--NDTVVGHNIAFDANFISKKCVAYGLDFKNDTY--DTLA 122 Query: 129 IARRKHPSSRNDLNSLCKRYGI---TISHRS 156 ++++P + L + + GI I HR+ Sbjct: 123 ACKQEYPDVSHKLEDMIIQLGIKDSGIHHRA 153 >gi|322833483|ref|YP_004213510.1| ribonuclease T [Rahnella sp. Y9602] gi|321168684|gb|ADW74383.1| ribonuclease T [Rahnella sp. Y9602] Length = 238 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 22/209 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + +++ T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAKTDALLEIAAITLKMDEDGWLQSDETVHFHVEPFEGAILVPEALAFNG 90 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + IF EQN A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEYEALHEIFKVIRKGMKEQNCNRAIIVAHNANFDHSFLMAAAERAGLK 150 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ ++++ ++ Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACISAGIVFDSSQAHSALYDTERTAELFCEL 208 Query: 175 M-----VGGSQINFGFKTNEDRFFKEEKK 198 + +GG + + ED EE + Sbjct: 209 VNRWKRLGGWPLALSDEEVEDETASEENQ 237 >gi|308068487|ref|YP_003870092.1| DNA polymerase III subunit epsilon [Paenibacillus polymyxa E681] gi|305857766|gb|ADM69554.1| DNA polymerase III, epsilon chain [Paenibacillus polymyxa E681] Length = 245 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 10/172 (5%) Query: 5 NKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62 +++ +VFD+ETTG +++ D I+ GA+ ++ + Q + N R PE + +L Sbjct: 56 DRLETVVFDLETTGFSAQHGDEILSFGAIRVVGDMVMEKE-QFYTLVNPRTVIPEHITEL 114 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT E P + +F F + +AH + D F+NA L + +K L R Sbjct: 115 TGITREMTDQAPPLMNGLHDFMSFVGGRVL--VAHASAHDKAFLNAALWKTSKVQLT-HR 171 Query: 123 IIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++DT+ +A+ P L+ L I I R H AL D+ + + +++ Sbjct: 172 VLDTMMLAKWLEPQQHQTYSLDELLAYQSIPIEGR--HHALEDAKMTAKLWV 221 >gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 315 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|328479965|gb|EGF49008.1| DNA polymerase III PolC [Lactobacillus rhamnosus MTCC 5462] Length = 132 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 5/122 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P G S + L ITD+ Sbjct: 14 VVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDDM 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + S +F F F + A + HN FDVGF++ +R +D + +IDTL + Sbjct: 72 VHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLEL 128 Query: 130 AR 131 +R Sbjct: 129 SR 130 >gi|291537849|emb|CBL10960.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis XB6B4] Length = 226 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 29/224 (12%) Query: 3 RKNKMRK------IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 RK K R+ +++D+ETTG+ S D +IEI AV++ + K F + P GR Sbjct: 5 RKGKQRREYVPDYVLYDLETTGISSLYDEVIEISAVKVRN-GKIVDEFSELVNP-GRPIP 62 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINK 115 A ++ I+D+ +++ SF + EF F + HN A FD+ F+ + ++ Sbjct: 63 YAASSVNNISDKMVENARSFEKVLPEFLAFAGDD--VLAGHNIAGFDMKFLYRDCEKYFG 120 Query: 116 DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L + IDTL+IA+ P ++ L+ L + YG IS + H AL D + V+ M Sbjct: 121 QTLT-NDYIDTLAIAKLCFPEWKHRRLSDLAEHYG--ISTKGAHRALADCRMNQQVFELM 177 Query: 175 M--VGGSQINFGFKTNEDRFFKEEKKTVPNISL-LKRDKPLFTR 215 GG+ + E+K P L LK+ F R Sbjct: 178 AKESGGTSAK-----------QTEEKICPRCGLALKKRNGRFGR 210 >gi|308235755|ref|ZP_07666492.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14018] Length = 301 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 21/166 (12%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA----LKLHGIT 66 V D ETTGL + D IIEIG + + + +R Q+ K S E L GIT Sbjct: 18 VLDTETTGLSAYYDEIIEIGILRVRNNEIVDRYDQLI------KPSIEVDGFITALTGIT 71 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ L+D PS SS+ ++ F +E + HN FD+ F+N K+ L ++ +DT Sbjct: 72 NDMLEDMPSISSVKNDVLSFISEDII--LGHNTSFDMRFLNEGF----KEQL-SNQYMDT 124 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + AR+ +P ++ L+ L G+ H ++H AL D ++Y Sbjct: 125 MQFARKLYPELKHHRLSDLTDYLGL---HNNEHRALADCIATKELY 167 >gi|206560423|ref|YP_002231187.1| putative exonuclease [Burkholderia cenocepacia J2315] gi|198036464|emb|CAR52360.1| putative exonuclease [Burkholderia cenocepacia J2315] Length = 205 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL DR EI + L D +R FQ + GR+ + + L GIT++ Sbjct: 6 VLDFETTGLSPNLGDRATEIAVILLRDGEVVDR-FQSLM-NAGRRIPSDVVALTGITNDM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P S + E F + +AHNA FD F +EL + T+ + Sbjct: 64 IAAAPPASEVMKEAAAFVGKHAV--VAHNAGFDKRFWQSELGLLGMSA--DHAFACTMLV 119 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR +P +R+ L+SL + + S R+ H A++D+ + ++ ++ Sbjct: 120 ARRIYPDARSHRLSSLIEMLRLPQSGRA-HRAMVDAEMAGHLWCRL 164 >gi|227529135|ref|ZP_03959184.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus vaginalis ATCC 49540] gi|227350979|gb|EEJ41270.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus vaginalis ATCC 49540] Length = 960 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 17/171 (9%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTG + DRII++G V + D N F+ + P R P + +L GI + Sbjct: 27 VVDLETTGTSVNHGDRIIQVGCVLVQDGEIINH-FETKINP--RVAVPRHITQLTGIKNN 83 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P F I + + ++AHN FD F+NAEL+R L + IDT++ Sbjct: 84 DVRNAPLFEDIAGTLYSLLS--GTIFVAHNVNFDFPFLNAELERAGYPSLS-IKAIDTVT 140 Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++ P+ ++ DL S ++I H H A+ D+ + + + +M Sbjct: 141 LSQILMPTVKSYRLRDLTS-----SLSIEHDHPHSAVSDAEATAHLLVDLM 186 >gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus H3081.97] gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187] gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1] gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26] gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus H3081.97] gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH187] gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1] gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26] Length = 315 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|297584227|ref|YP_003700007.1| exonuclease RNase T and DNA polymerase III [Bacillus selenitireducens MLS10] gi|297142684|gb|ADH99441.1| Exonuclease RNase T and DNA polymerase III [Bacillus selenitireducens MLS10] Length = 233 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 90/165 (54%), Gaps = 10/165 (6%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD+ETTG K DRI+ IG V++ + T+ TF F+ + + S L GI +E Sbjct: 53 VFDLETTGFFPQKQDRILSIGGVKIKNNEITDDTFYSFVYYD-QPISETIRHLTGIQEED 111 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P+ + + + F+ F ++ +IAH+A + GF+ L R + R+IDT+ + Sbjct: 112 VLNAPAEADVLTRFFAF--AEDDLFIAHHAAHEKGFMQDALWRSFRATFQ-RRLIDTIFL 168 Query: 130 ARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + P R+ +L + C+ + I + R H AL D+ L ++++I Sbjct: 169 TKLQ-PDLRDTAELEACCRYFNIEPAGR--HHALHDAKLAAELWI 210 >gi|304387160|ref|ZP_07369404.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC 13091] gi|304338764|gb|EFM04874.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC 13091] gi|325201850|gb|ADY97304.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240149] Length = 470 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R+ P+ + Sbjct: 84 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|229162442|ref|ZP_04290403.1| DNA polymerase III alpha subunit [Bacillus cereus R309803] gi|228620921|gb|EEK77786.1| DNA polymerase III alpha subunit [Bacillus cereus R309803] Length = 315 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + L+P +++IDT+ Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL--LEPKNKVIDTVF 124 Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ KH + + L +L + GI + S H A D + VY K Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|311114663|ref|YP_003985884.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019] gi|310946157|gb|ADP38861.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019] Length = 307 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 21/166 (12%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA----LKLHGIT 66 V D ETTGL + D IIEIG + + + +R Q+ K S E L GIT Sbjct: 24 VLDTETTGLSAYYDEIIEIGILRVRNNEIVDRYDQLI------KPSIEVDGFITALTGIT 77 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ L+D PS SS+ ++ F +E + HN FD+ F+N K+ L ++ +DT Sbjct: 78 NDMLEDMPSISSVKNDVLSFISEDII--LGHNTSFDMRFLNEGF----KEQL-SNQYMDT 130 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + AR+ +P ++ L+ L G+ H ++H AL D ++Y Sbjct: 131 MQFARKLYPELKHHRLSDLTDYLGL---HNNEHRALADCIATKELY 173 >gi|72160587|ref|YP_288244.1| DNA polymerase III subunit epsilon [Thermobifida fusca YX] gi|71914319|gb|AAZ54221.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX] Length = 250 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 12/150 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF-L 70 FDIETTG++ + DR++ +E + RT + +L G + PEA+ +HGI+ E + Sbjct: 19 FDIETTGINLEQDRVVTAAIIE-TAADGSQRTRRTWLVNPGVEIPPEAVAIHGISTELAV 77 Query: 71 KDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDP-----SR 122 D +E D + + NA FD+ ++ E +R PL + Sbjct: 78 ADGIPAPVAVAEITDLLEQVLQSGTPLVIMNAPFDLTILDRECRRYGVVPLSERLDTVAP 137 Query: 123 IIDTLSIARR--KHPSSRNDLNSLCKRYGI 150 +ID L + R ++ + L +LC YG+ Sbjct: 138 VIDPLILDRHIDRYRRGKRTLEALCAHYGV 167 >gi|326562712|gb|EGE13014.1| ribonuclease T [Moraxella catarrhalis 103P14B1] gi|326568721|gb|EGE18791.1| ribonuclease T [Moraxella catarrhalis BC8] gi|326574186|gb|EGE24134.1| ribonuclease T [Moraxella catarrhalis 101P30B1] gi|326575625|gb|EGE25549.1| ribonuclease T [Moraxella catarrhalis O35E] Length = 232 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 20/184 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++ D ++EI V +L + N + P +G P ALK G Sbjct: 22 VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81 Query: 65 ITDE--FLK-----DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN 114 I + F K +K + IF E + + HNA FD+GF+NA + R N Sbjct: 82 INPDSPFRKAISEDEKTALRRIFKALKALKKEHSCRQCILVGHNAHFDLGFLNAAIARTN 141 Query: 115 K---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P ++DT+S A + L C G+ ++ H AL D+ ++++ Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGLEFDNQHAHSALYDAQKTAELF 199 Query: 172 IKMM 175 ++ Sbjct: 200 CHIV 203 >gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 315 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|308069470|ref|YP_003871075.1| DnaQ family exonuclease/DinG family helicase, [Paenibacillus polymyxa E681] gi|305858749|gb|ADM70537.1| DnaQ family exonuclease/DinG family helicase, putative [Paenibacillus polymyxa E681] Length = 955 Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65 M+ V D ETTG S +D II++G + ++D+ + +R + ++ P GR P L GI Sbjct: 1 MKFAVLDFETTGTQSADD-IIQVG-LAIIDHDNSISRVYGSYVNP-GRSIPPFITGLTGI 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ +KD P+ + E ++ + HN FD F+ L R P RI+D Sbjct: 58 TDDDVKDAPALEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILD 114 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ + PS S L + + ++H H A D+ ++V++K + Sbjct: 115 TMDFLKIMFPSLSSYQLGFVSSEF--ELAHDRPHQADSDALATAEVFLKCL 163 >gi|269968066|ref|ZP_06182103.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269827312|gb|EEZ81609.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 238 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 70/159 (44%), Gaps = 6/159 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGLDS+ + I+ +G VE+ T Q + K PE + ++ IT + Sbjct: 52 IVLDLETTGLDSEEEVILSMGWVEIRQGHIDLATSQHLYVHSDSKIKPETIVVNHITQQM 111 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D S F F +N +AH + FIN LQR+ P IDTL I Sbjct: 112 LTDGISIHEAMRTF--FKAAENKVIVAHGCIVETSFINQYLQRVFNIKELPLIWIDTLRI 169 Query: 130 ARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +R S +D+ R + + H AL D+ Sbjct: 170 EKRLQRAINASDESDVTLAATRERYGLPAYNGHNALADA 208 >gi|294498159|ref|YP_003561859.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium QM B1551] gi|294348096|gb|ADE68425.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus megaterium QM B1551] Length = 933 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 7/164 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTG K D++I+ AV +++ K F FL P G P +L I Sbjct: 4 RFVVVDLETTGHSPKQGDKMIQFAAV-IVEDGKIVERFSSFLNP-GMDIPPFITQLTNIQ 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ +KD P F I + + + +A ++AHN FD+ F+ EL + ++ L S +DT Sbjct: 62 NDMVKDAPLFEEISPKIIELLD--DAYFVAHNVAFDLTFLQEELYQCGEETLYNST-VDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + +AR P+ S Y + I H + H A D+ + + + Sbjct: 119 VELARILLPTVDGYKLSQLAEY-LHIEHENPHQADSDAEVTARI 161 >gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293] gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293] Length = 315 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar konkukian str. 97-27] gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus anthracis CI] gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar konkukian str. 97-27] gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar anthracis str. CI] Length = 315 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|312870744|ref|ZP_07730851.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 3008A-a] gi|312873738|ref|ZP_07733783.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 2052A-d] gi|329919615|ref|ZP_08276604.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN 1401G] gi|311090736|gb|EFQ49135.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 2052A-d] gi|311093756|gb|EFQ52093.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF 3008A-a] gi|328937420|gb|EGG33842.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN 1401G] Length = 299 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 14/161 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALK-LHGITD 67 ++ D+ETTGLD N+ IIEIGA+ K + + + C + + P A+K L GI+D Sbjct: 132 VIIDLETTGLDYINNNIIEIGAI------KIAKNIEEYSCIVKQNITLPNAIKILTGISD 185 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 LK S E F ++ + +N FD+ FIN L+R + L +++ D + Sbjct: 186 AELKTGKDESVAIKELCTFIGDK--ALVGYNVNFDIRFINEALKRNGQSQL-TNKVYDVM 242 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLL 167 +R +N L+++ YGI I + H A+ D ++ Sbjct: 243 KYVKRDKMFLKNYKLDTVLSEYGINI--KVPHRAIEDVKII 281 >gi|302554973|ref|ZP_07307315.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] gi|302472591|gb|EFL35684.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] Length = 238 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 23/160 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68 I FD+ETTG D + RI+ +E+ + R + +L G +A+ +HGI+ E Sbjct: 9 IGFDLETTGTDPREARIVTGAVIEVRGGEPSGR--REWLADPGVPIPEDAVAVHGISTER 66 Query: 69 -FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 + +P + + + + +W + +A+NA FD+ ++AEL+R L Sbjct: 67 AAAEGRPADQVADAMAEVLTSYW----KTGVPVVAYNAAFDLTLLSAELRRHGLPSLRDR 122 Query: 119 ----DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 DP+ +ID +I R ++ + +L ++C YG+ + Sbjct: 123 LGGVDPAPVIDPYTIDRWVDRYRRGKRNLEAVCAEYGVVL 162 >gi|62185003|ref|YP_219788.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3] gi|62148070|emb|CAH63824.1| DNA polymerase III, epsilon chain [Chlamydophila abortus S26/3] Length = 228 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRIIEI A + T +F ++ P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIIEIAAYNHI----TKESFVTYVNPEIPIPE-EASKIHGITTST 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + F +F +A +AHN FD + E +R +PL + ID+L Sbjct: 60 VISAPKFPEAYKHFCEFCG-NDAVLVAHNNDSFDFPLMEKECRRHALEPLS-LKTIDSLK 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A++ P +++L L + YG + H AL D L +V+ ++ Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHNVFSALI 163 >gi|291537711|emb|CBL10823.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis M50/1] Length = 226 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 15/180 (8%) Query: 3 RKNKMRK------IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 RK K R+ +++D+ETTG+ S D +IEI AV++ + K F + P GR Sbjct: 5 RKGKQRREYVPDYVLYDLETTGISSLYDEVIEISAVKVRN-GKIVDEFSELVNP-GRPIP 62 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINK 115 A ++ I+D+ +++ SF + EF F + HN A FD+ F+ + ++ Sbjct: 63 YAASSVNNISDKMVENARSFEKVLPEFLAFAGDD--VLAGHNIAGFDMKFLYRDCEKYFG 120 Query: 116 DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L + IDTL+IA+ P ++ L+ L + YG IS + H AL D + V+ M Sbjct: 121 QTLT-NDYIDTLAIAKLCFPEWKHRRLSDLAEHYG--ISTKGAHRALADCRMNQQVFELM 177 >gi|161870321|ref|YP_001599491.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442] gi|161595874|gb|ABX73534.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442] Length = 461 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R+ P+ + Sbjct: 75 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 131 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173 >gi|288921215|ref|ZP_06415500.1| stress protein [Frankia sp. EUN1f] gi|288347369|gb|EFC81661.1| stress protein [Frankia sp. EUN1f] Length = 622 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 9/163 (5%) Query: 14 IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73 +ET+GL + DRI+ I V++ + L P P + +HG+T E L Sbjct: 1 METSGLAADRDRILSIAVVQVGADGAVGERWTTLLDPG---CDPGPVHIHGLTRELLAGS 57 Query: 74 PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR- 132 P+F+ + E + +AHNA FD F+ AE R ++ L R + + +ARR Sbjct: 58 PTFADVVDELASRLAGR--VMVAHNASFDWRFLTAEAVRAGRE-LPTERRMCSCVLARRL 114 Query: 133 KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P L ++ + + +H AL D+ ++++V +M+ Sbjct: 115 DLPVPDFRLATIADFWAVPFER--QHDALADAMVVAEVLPRML 155 >gi|293363994|ref|ZP_06610730.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma alligatoris A21JP2] gi|292552484|gb|EFF41258.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma alligatoris A21JP2] Length = 1432 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 15/180 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FDIETTGL + IIE GA + + S R + F + S L GITD+ Sbjct: 402 ISFDIETTGLSPRYHEIIEFGASIIKNGSIVAR--EQFFIKASKPLSSFTTNLTGITDKM 459 Query: 70 LKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 L++ K + I F +N +AHNA+FD+ F+ +L N + + Sbjct: 460 LQEEGIELKTALERILKLF------ENKIALAHNAQFDMNFVFQKLLD-NCYAIPSISFV 512 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL I+R P+ S++ L GI S H A D+ +L+ +I + +Q+N Sbjct: 513 DTLMISRIIFPNKSKHRLGDYTSNLGINYSVDDAHRADYDAEILAQAWIASISHLAQLNL 572 >gi|254805232|ref|YP_003083453.1| putative DNA polymerase III subunit [Neisseria meningitidis alpha14] gi|254668774|emb|CBA06684.1| putative DNA polymerase III subunit [Neisseria meningitidis alpha14] Length = 461 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R+ P+ + Sbjct: 75 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 131 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173 >gi|296113547|ref|YP_003627485.1| ribonuclease T [Moraxella catarrhalis RH4] gi|295921241|gb|ADG61592.1| ribonuclease T [Moraxella catarrhalis RH4] gi|326559550|gb|EGE09964.1| ribonuclease T [Moraxella catarrhalis 7169] gi|326564652|gb|EGE14870.1| ribonuclease T [Moraxella catarrhalis 46P47B1] gi|326567767|gb|EGE17873.1| ribonuclease T [Moraxella catarrhalis BC1] Length = 232 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 87/211 (41%), Gaps = 24/211 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++ D ++EI V +L + N + P +G P ALK G Sbjct: 22 VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81 Query: 65 ITDE--FLK-----DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN 114 I + F K +K + IF E + HNA FD+GF+NA + R N Sbjct: 82 INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141 Query: 115 K---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P ++DT+S A + L C G+ ++ H AL D+ ++++ Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGLEFDNQHAHSALYDAQKTAELF 199 Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPN 202 ++ N TN + + T P+ Sbjct: 200 CHIV----NQNTLLSTNHANLTQNDTPTSPH 226 >gi|256784395|ref|ZP_05522826.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|289768274|ref|ZP_06527652.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|289698473|gb|EFD65902.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] Length = 244 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 25/159 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTG D + RI+ +E++ R + +L G + +A+ +HGI++E Sbjct: 9 IGFDLETTGTDPREARIVTGAVIEVMGSEPLGR--REWLADPGVEIPADAVAVHGISNER 66 Query: 70 L--KDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---- 117 + +P + +++ + W + +A+NA FD+ + AEL+R + P Sbjct: 67 AAREGRPADQVADAIATVLVDHW----KAGVPVVAYNAAFDLTLLAAELRR-HALPSLRE 121 Query: 118 ----LDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGI 150 LDP+ +ID +I R ++ + +L ++C+ YG+ Sbjct: 122 RLGGLDPAPVIDPYTIDRSVDRYRRGKRNLEAVCREYGV 160 >gi|163941216|ref|YP_001646100.1| DNA polymerase III subunit epsilon [Bacillus weihenstephanensis KBAB4] gi|163863413|gb|ABY44472.1| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis KBAB4] Length = 315 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P ++ P+ + L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + + +AHNA FD+ F+ + + + P + +IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTK--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 124 Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ KH + + L +L + GI + S H A D + VY K Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|326565468|gb|EGE15639.1| ribonuclease T [Moraxella catarrhalis 12P80B1] gi|326572590|gb|EGE22579.1| ribonuclease T [Moraxella catarrhalis CO72] Length = 232 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 20/184 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++ D ++EI V +L + N + P +G P ALK G Sbjct: 22 VVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTG 81 Query: 65 ITDE--FLK-----DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN 114 I + F K +K + IF E + HNA FD+GF+NA + R N Sbjct: 82 INPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLNAAIARTN 141 Query: 115 K---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P ++DT+S A + L C G+ ++ H AL D+ ++++ Sbjct: 142 SKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGLEFDNQHAHSALYDAQKTAELF 199 Query: 172 IKMM 175 ++ Sbjct: 200 CHIV 203 >gi|229109097|ref|ZP_04238697.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-15] gi|228674375|gb|EEL29619.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-15] Length = 934 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL+++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQVGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200] gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200] Length = 318 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNYR 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 72 VSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 128 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A++ KH + + L +L + GI + S H A D + VY K Sbjct: 129 AKKYMKH-APNHKLETLKRILGIRL---SSHNAFDDCITCAAVYQK 170 >gi|15896683|ref|NP_350032.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC 824] gi|15026532|gb|AAK81372.1|AE007841_7 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC 824] gi|325510847|gb|ADZ22483.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA 2018] Length = 1452 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 13/151 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG K ++I EIG ++ + K F +F+ P + +++ ITD+ + Sbjct: 430 VLDLETTGFSPKTEKITEIGIMK-YENGKVIDKFSLFVNPE-KPIPARVVEVTNITDDMV 487 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTLS 128 K+ + +F + +F + + +AHNA FD+GF+ NA++ D +DTLS Sbjct: 488 KNAETIDKVFPKMLEFI--KGSVLVAHNASFDIGFLKHNAKVLGYEFD----FTYLDTLS 541 Query: 129 IARRKHPSSRN-DLNSLCKRYGI--TISHRS 156 +A+ P ++ L + K GI ++HR+ Sbjct: 542 LAQAVFPQYKSYKLGRIAKNLGIKVEVAHRA 572 >gi|209695329|ref|YP_002263258.1| ribonuclease T [Aliivibrio salmonicida LFI1238] gi|208009281|emb|CAQ79547.1| ribonuclease T [Aliivibrio salmonicida LFI1238] Length = 221 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +SK D ++EI AV L Y K T + P G EAL G Sbjct: 20 VVIDVETAGFNSKTDALLEICAVTLAMDDEGYLKPATTIHFHVTPFEGANLEQEALDFIG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFI--NAELQRI 113 I D F L+ + E + ++ A +AHNA FD F+ AE ++ Sbjct: 80 IRDPFSPLRGAVTEDVALKEIFKLIRKEQKQHDCRRAIMVAHNANFDHSFVMEAAERTKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +I+ + L CK G+ + H AL D+ ++++ Sbjct: 140 KRIPFHPFCTFDTAAISGLA--LGQTVLAKACKTAGMDFDGKEAHSALYDTEKTAELFCH 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|127512449|ref|YP_001093646.1| ribonuclease T [Shewanella loihica PV-4] gi|126637744|gb|ABO23387.1| RNAse T [Shewanella loihica PV-4] Length = 257 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-----NRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI AV LL ++T + P G PEAL + Sbjct: 40 VVIDVETAGFNAQTDALLEI-AVTLLKMDDNGDLVLDKTLHYHIEPFEGANLEPEALAFN 98 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113 GI + +K +F IF E N +AHNA FD GF+ ++R + Sbjct: 99 GIDPSNPLRGAVSEKEAFLEIFKEVKKHQKASNCHRSIIVAHNAAFDHGFVTQAIERNAL 158 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ L C+ GI ++ H AL D+ ++++ Sbjct: 159 KRTPFHPFATFDTAALSGLA--LGHTVLAKACEIAGIPFDNKEAHSALYDTERTAELFCH 216 Query: 174 MM 175 ++ Sbjct: 217 IV 218 >gi|331701432|ref|YP_004398391.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus buchneri NRRL B-30929] gi|329128775|gb|AEB73328.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus buchneri NRRL B-30929] Length = 945 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 9/152 (5%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V DIETTG D S ++R I+ L+ +K +TF + P R+ ++L GIT+E Sbjct: 9 VVDIETTGTDISADNRTIQFSCC-LVSNNKIIKTFVTDINPQ-REVPNRIVQLTGITNER 66 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ +F + ++ + N N ++AHN FD F+N+E QR+ L IDT+++ Sbjct: 67 LQKAKTFDQVAAQLYSLLN--NTVFVAHNVNFDFPFLNSEFQRVGYPELQ-IEAIDTVTL 123 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160 ++ P+ S L L + I H H A Sbjct: 124 SQILLPTLSSYRLQDLSSYFN--IEHDHPHTA 153 >gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] gi|302442614|gb|EFL14430.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] Length = 332 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 10/162 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRI+ AV LD ++ N + N R++ P +HG+T L Sbjct: 29 VVDVETTGL-ARDDRIVS-AAVYRLD-AQGNVEDHWYTLVNPRRD-PGPTWIHGLTSAML 84 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P F+ I EF ++ +AHNA FD I E R + R+ T++++ Sbjct: 85 QDAPLFADIAEEFAGRLADRVL--VAHNAIFDWQMIAREYARASATAPVRQRLC-TIALS 141 Query: 131 RRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + P + L SL YG+ + R+ H AL D+ +L++ + Sbjct: 142 KELNLPLPNHKLESLAAHYGV-VQQRAHH-ALDDARVLAEAF 181 >gi|71414299|ref|XP_809256.1| exonuclease [Trypanosoma cruzi strain CL Brener] gi|70873611|gb|EAN87405.1| exonuclease, putative [Trypanosoma cruzi] Length = 316 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 90/218 (41%), Gaps = 53/218 (24%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVE-------LLDYSKTNRTFQVFLCPNGRKNSPEA 59 M I D+ETTG ++ D I+ IGAVE L + R+F + P+ + +S +A Sbjct: 94 MSAICVDLETTGFSAQRDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRPS-KPSSHQA 152 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFF------------NEQN---------------- 91 +HG++ E L+D P + S+F F E+N Sbjct: 153 EAVHGLSFEMLRDAPLLEDVISDFAAFLIQLDGNLPQSGQTEENHRAKPGDLSAKKRCTA 212 Query: 92 ----------AEWIAHNAKFDVGFINAELQ----RINKDPLDPSRIIDTLSIARRKHPSS 137 IAHNA FD F+ + R+ D P + T S+ R + Sbjct: 213 ATTAGCVLTLPPVIAHNANFDASFLQRAVSGAGWRVVWDEYAP--LTCTQSMFRALYSHQ 270 Query: 138 RNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKM 174 DL+ C+ G+ S R +H AL D+ L +++++ Sbjct: 271 AADLSRACQFCGVDTSGRDERHDALHDAQLCGRLFLRL 308 >gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD] Length = 1457 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 9/172 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGIT 66 R +VFD+ETTGL K + +IE GAV + +T + + P ++ P + L GIT Sbjct: 403 RYVVFDLETTGLSPKFNELIEFGAV-VWQNGQTLEKHEFLIKP--KEKIPSYISDLTGIT 459 Query: 67 DEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++++ S + F QN+ +AHNA+FD G + + + L+ +ID Sbjct: 460 NQMIENEAISVEEAAIKIKQIF--QNSILVAHNARFDYGCLVEFFKELELYELEQP-VID 516 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 TL ++R P+ R++L L K I H D+ +L+ V+ + ++ Sbjct: 517 TLEVSRFLAPTQKRHNLKELAKNASIHYDETESHRGGYDAEVLAKVWDQFLI 568 >gi|237785812|ref|YP_002906517.1| putative DNA polymerase III subunit epsilon [Corynebacterium kroppenstedtii DSM 44385] gi|237758724|gb|ACR17974.1| putative DNA polymerase III epsilon subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 256 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEALKLHGITD 67 + D+ETTGLD+ DR++ +G V + + T +L G + ++ +HGITD Sbjct: 65 LAVDVETTGLDADRDRLLSVGMVAINGRAIPLATADHWLVRYHEGDVSVGQSATIHGITD 124 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNA-EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L++ S I + D N +AH A + FI+ +R P P ++DT Sbjct: 125 SQLENGRSLLDILT---DVVNAAAGRALLAHLALIEHDFISTACERAVGVPWSPLCVVDT 181 Query: 127 LSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + RR S R ++ + RY + H AL+D+ +++Y+ Sbjct: 182 MDLERRSAVSFGRRPGRGEVRLMNARYSRGLPSYHNHNALVDALACAELYLA 233 >gi|163791070|ref|ZP_02185490.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Carnobacterium sp. AT7] gi|159873626|gb|EDP67710.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Carnobacterium sp. AT7] Length = 939 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 89/167 (53%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V DIETTG + + DR+I+ G V LL+ + F + P + P+ ++ L G++++ Sbjct: 9 VVDIETTGGNVASGDRMIQFGCV-LLEGDQVVHRFATNINP--LTSIPKQIEHLTGLSNK 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F I + ++ + IAHN +FD F++AELQR L ++ IDT+ Sbjct: 66 TVAQAPYFEDIAATIYNLLD--GCIIIAHNIQFDYTFLSAELQRCGMPALQ-NKGIDTVE 122 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A+ P+ S LN L ++ I H + H A D+ + +++++ + Sbjct: 123 LAQVLLPTESSYRLNDLVSKFN--IEHTNPHQADSDAAVTAELFLVL 167 >gi|119946100|ref|YP_943780.1| ribonuclease T [Psychromonas ingrahamii 37] gi|119864704|gb|ABM04181.1| RNAse T [Psychromonas ingrahamii 37] Length = 207 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 23/184 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-ELLD-----YSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ DIET+GL+++ D I+EI A+ +D ++ F V L G P+AL Sbjct: 15 VIIDIETSGLNAQTDAILEIAAILPAMDSQGYLFAAEKIHFNV-LPFEGANLDPKALAFT 73 Query: 64 GITDEF------LKDKPSFSSIFSEFWDFFNEQN----AEWIAHNAKFDVGFINAELQRI 113 GI D F + ++ + + IF + +QN + +AHNA FD GFIN +R Sbjct: 74 GI-DPFNPLRAAVDERDALTEIF-KLVRKHQKQNLCNRSIIVAHNATFDQGFINKATERC 131 Query: 114 N--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 N + P P DT S+A + L C++ I ++ H AL D+ + +D++ Sbjct: 132 NLKRMPFHPFVSFDTASMAGLI--LGQTVLAKACQQASIPYDNKQAHSALYDTEVTADLF 189 Query: 172 IKMM 175 M+ Sbjct: 190 FYMV 193 >gi|327439003|dbj|BAK15368.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046] Length = 251 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 12/146 (8%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGITD 67 +V DIETTG + + D+I+EI A+++ + +T F F+ P KNS +HGIT+ Sbjct: 88 VVVDIETTGGSAARGDKIVEIAALKI-RHGETVDLFHRFVNPEKPIKNS----HIHGITN 142 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRIIDT 126 E +KD+ + S + F F + ++H+ FD F+ E R P +P+ T Sbjct: 143 ERVKDEQTISPVIHAFKAFLGD--LPIVSHHIGFDWYSFLALEFFRNGIRPTNPAAC--T 198 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITI 152 + +AR+ S RN+LN + + Y I + Sbjct: 199 VLLARKYLDSPRNNLNVIAETYNIPL 224 >gi|268679559|ref|YP_003303990.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] gi|268617590|gb|ACZ11955.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] Length = 246 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 26/171 (15%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + I+FD ETTG +++ DRII+IGA+ ++D F LC EA+ +HGIT Sbjct: 3 KYILFDTETTG-NNEEDRIIQIGAM-IVDAKGQVEVFDE-LCSTVLPIKVEAMAVHGITP 59 Query: 68 EFLKDKPSFSSI-FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125 ++ K F+ F + N Q IAHN FD+G + K+ P +IID Sbjct: 60 NLIEGKGLFTDTNFYKTLLSLNNQENYLIAHNMPFDMGM-------LQKEGFIPDLKIID 112 Query: 126 TLSIARRKHPSS--------RNDL------NSLCKRYGITISHRSKHGALL 162 TL +A+ P+S R DL + +Y ITI G +L Sbjct: 113 TLRVAKHLIPNSPSKALQYLRYDLELYKNEQAEADKYNITIKAHDAIGDVL 163 >gi|332362812|gb|EGJ40606.1| DNA polymerase III [Streptococcus sanguinis SK355] Length = 814 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + E +K Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPHEELD--EHIK 56 Query: 62 -LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 57 ELTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC + IS + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYSLGNLCNL--LDISLENAHTALADAQATAQLFLKI 165 >gi|331002519|ref|ZP_08326037.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410335|gb|EGG89769.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon 107 str. F0167] Length = 235 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 9/175 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D+ET+G+ ++D+IIE+G +++ D S TF + P N E L+L GI Sbjct: 7 IAIDLETSGIKLRSDKIIEVGLLKIKD-SHITDTFSCLINPEIEINE-EILRLTGIKKRE 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + S + + +F ++ + + HN FD FI E R + + +DT + Sbjct: 65 LYNAESINEVIGHIVEFC--EDYDLLGHNTVFDYSFIKREASRAG--LVFDKKGLDTYKL 120 Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++ P+ + +L C+ +G I ++ H A D++ ++ K+M NF Sbjct: 121 CKKILPADIKKNLTDACRYFG--IERKNPHRAFSDAYYTHLLFQKIMENFPDFNF 173 >gi|303326602|ref|ZP_07357044.1| exonuclease [Desulfovibrio sp. 3_1_syn3] gi|302862590|gb|EFL85522.1| exonuclease [Desulfovibrio sp. 3_1_syn3] Length = 175 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 10/165 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET+G + + + + +E D T+ +++ P+ R E +HG+T Sbjct: 9 VAIDFETSGYAAHSACAVGLARIE--DGRVTDCFYRLLRPPSARVLFTE---IHGLTWPM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+D PSF+ + E + +AHNA FD + A R P + + TL Sbjct: 64 LRDAPSFAQAWPEAGAILCGAH-FLLAHNASFDRRVLLA-CCRAAGLPAPEAPFLCTLKG 121 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +RR P LN +C+ +GI + H H A D+ ++VY+++ Sbjct: 122 SRRSLPLPSKKLNLVCEYFGIALKH---HNAASDAQACAEVYLRL 163 >gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B] gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B] Length = 298 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 36/220 (16%) Query: 1 MIRKNKMRKI-----VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M KN ++I V D ETTGL S D IIEIG +++ D +R Q+ + P+ + Sbjct: 1 MANKNYTKQIINDYCVLDTETTGLSSYYDEIIEIGILKVRDNKIVDRYSQL-IKPDYEID 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 S L GIT+E +K+ P+ + + S+ F + I HN FD+ F+NA Sbjct: 60 SF-ITSLTGITNEMVKEMPAINFVMSDVLSFIGKD--VIIGHNTSFDIRFLNAGFNI--- 113 Query: 116 DPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITIS-HRSKHGALLDSHL------- 166 LD ++ +DT+ AR+ P ++ L+ L G++ + HRS + L Sbjct: 114 -ELD-NKYMDTMQFARKLFPELKHHRLSDLTSYLGLSNNEHRSIADCIATKELYDSIKDT 171 Query: 167 -------LSDVYIKMMVGGSQINFG------FKTNEDRFF 193 + D+++K GG I+ + +ED FF Sbjct: 172 MTKRGLGIQDLWVKSNHGGKGIDIKSIHPTEVEIDEDNFF 211 >gi|157151695|ref|YP_001450717.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gordonii str. Challis substr. CH1] gi|157076489|gb|ABV11172.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus gordonii str. Challis substr. CH1] Length = 824 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 21/180 (11%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M RKN M+ + D+E TG S +II++G V +L+ + T+Q + P+ EAL Sbjct: 1 MKRKN-MKYAIVDLEATGTGS-TAKIIQVGIV-ILEDGEIKETYQTDINPH------EAL 51 Query: 61 KLH-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 + H G++D+ L P FS + E ++ ++A ++AHN KFD + L Sbjct: 52 EEHIKQLTGLSDQRLSQAPDFSQVAREIYELI--EDAVFVAHNVKFDANLLAESLFWEGF 109 Query: 116 DPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D L P +DT+ +A+ P+ + L+SLC+ I + H A+ D+ + +++K+ Sbjct: 110 DLLSPR--VDTVELAQVVFPTYEKYGLSSLCELLEIPLEQ--AHTAISDAMATALLFLKI 165 >gi|78355675|ref|YP_387124.1| DNA polymerase III subunit epsilon [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218080|gb|ABB37429.1| DNA polymerase III, epsilon subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 239 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 21/184 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+E TGLD ++D I+ IGAV + S T F ++ P P L +H IT Sbjct: 43 VTDMEMTGLDPEHDEIVAIGAVRIRGLSIITGDVFHTYVRPQRSMARPATL-IHRITPAQ 101 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 L+ P+ + + F D+ + A H+ D+GF+ +R + P P +DT+ Sbjct: 102 LQHSPALAGLLPGFVDWCGQ--ALITGHHVGLDMGFLTRACRRHLGGAPATPC--VDTMR 157 Query: 129 IARRK------------HPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174 +A+ P+ L L RYG+ +H + AL ++L + K+ Sbjct: 158 LAQAWERERWERSFDPFQPTVSYTLADLSARYGLPQFRAHDALEDALQTAYLFLYLVRKL 217 Query: 175 MVGG 178 GG Sbjct: 218 KGGG 221 >gi|315182194|gb|ADT89107.1| DNA polymerase III, alpha subunit [Vibrio furnissii NCTC 11218] Length = 184 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 8/154 (5%) Query: 23 NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82 DR IEIGAV+L+D + TFQ + P G + S GIT+ L+ P + +E Sbjct: 2 GDRAIEIGAVKLVD-GQVAGTFQQLMNP-GFRVSGFIEGYTGITNTMLRTAPRCEEVMAE 59 Query: 83 FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK-HPSSRNDL 141 F F + +AHNA FD F++AE RI P + ++ IARR + + L Sbjct: 60 FAHFIGD--TPLVAHNASFDKRFLDAEFDRIGVRY--PGQFACSMLIARRLIQNAPTHKL 115 Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L R+ + + H AL DS + + +++ M+ Sbjct: 116 GDLV-RFKQIENDGTFHRALADSQMTASLWMLMV 148 >gi|56420711|ref|YP_148029.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus kaustophilus HTA426] gi|56380553|dbj|BAD76461.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426] Length = 909 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 15/173 (8%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KLH 63 R ++ D+ETTG K DRII++G + D R F F P P L +L Sbjct: 4 RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE----QPIPLFIQQLT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I +E ++ P F+ E + A ++AHN FD+ F+ AEL+R P Sbjct: 59 NINEEMVEGAPLFADKAGEIAALMH--GAYFVAHNVDFDLPFLQAELERAGWPPFS-GPT 115 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDT+ +AR P++ + L L ++ G + H H A D+ + + ++I ++ Sbjct: 116 IDTVELARIVLPTAESYKLGDLARQLG--LHHNRPHQADSDAEVTAKLFIALL 166 >gi|78066765|ref|YP_369534.1| DNA-directed DNA polymerase [Burkholderia sp. 383] gi|77967510|gb|ABB08890.1| DNA-directed DNA polymerase [Burkholderia sp. 383] Length = 205 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL + DR EI + L D +R FQ + GR+ + + L GIT+E Sbjct: 6 VLDFETTGLSPNMGDRATEIAVILLRDGQVVDR-FQSLM-NAGRRIPSDVVALTGITNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P S++ E F + +AHNA FD F +EL + T+ + Sbjct: 64 IAAAPPASNVMKEAAAFVGKHAV--VAHNAGFDKRFWQSELGILGMSA--EHAFACTMLV 119 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR +P +++ L+SL + S R+ H A++D+ + ++ ++ Sbjct: 120 ARRIYPDAQSHRLSSLVDMLRLPKSGRA-HRAMVDAEMAGHLWCRL 164 >gi|255068237|ref|ZP_05320092.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sicca ATCC 29256] gi|255047507|gb|EET42971.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sicca ATCC 29256] Length = 449 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 12/162 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 +V D+E+TG + DR+ EI + + + Q+ N K PE ++L GIT+E Sbjct: 1 MVVDLESTGGNLYQDRVTEIAFLRF-ENGRVEHYEQLI---NPGKPIPEFVVQLTGITNE 56 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+F I + + + +AHN++FD F+ E R D P+ + T+ Sbjct: 57 MVAQAPAFDQIAPDILPLL--RGSLIVAHNSRFDYTFLRHEFYRAGIDFAAPA--LCTVQ 112 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++RR +P +++L+S+ R GI R H AL D L+D Sbjct: 113 LSRRLYPQFYKHNLDSIISRMGIQTDDR--HRALADVLALAD 152 >gi|256851162|ref|ZP_05556551.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN] gi|260660586|ref|ZP_05861501.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN] gi|282934628|ref|ZP_06339871.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] gi|297206027|ref|ZP_06923422.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16] gi|256616224|gb|EEU21412.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN] gi|260548308|gb|EEX24283.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN] gi|281301203|gb|EFA93504.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] gi|297149153|gb|EFH29451.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16] Length = 936 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 88/167 (52%), Gaps = 10/167 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69 V D+ETTG DRII+ G ++ + +T+ + P + + P+A++ L GI Sbjct: 12 VVDLETTGTRRGQDRIIQFGCA-IIKNRQIIKTYSFLINP--KADIPQAVQNLTGIKPAD 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P F + ++ D Q+ ++AHN FD+ F+NAEL N P +R IDT+ + Sbjct: 69 VVNQPVFKNFATQIEDIL--QDTVFVAHNINFDLPFLNAELAA-NGFPKLRNRAIDTVEL 125 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ P+ L+ L + + + H + H A D++ + + +K++ Sbjct: 126 SKIAFPTLPSYRLSDLT--HSLNLKHTNPHQADSDAYATASLLLKIL 170 >gi|226355452|ref|YP_002785192.1| DNA polymerase III subunit [Deinococcus deserti VCD115] gi|226317442|gb|ACO45438.1| putative DNA-directed DNA polymerase (DNA polymerase III, subunit) [Deinococcus deserti VCD115] Length = 204 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 89/174 (51%), Gaps = 22/174 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 + D E+TG++ +D +I++G + LD + + ++ P R + + +HG++ Sbjct: 14 VALDFESTGMNPAHDEVIQVG-LAPLDAGAVDLGGAWAQWVRPT-RPFRADTVAIHGLSY 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L++ P+ S++ E Q +AH A ++GF + + L P+ +DTL Sbjct: 72 ELLQEAPAISTVRLELGARL--QGRVLVAHYAALELGF-------LKRWGLRPAATLDTL 122 Query: 128 SIA----RRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A R+ ++R D L++L +R+G+ + +H AL D+ + + V++ + Sbjct: 123 MLALALDRQSTATARRDAYTLSALARRFGVEVY--GEHDALADALITAQVFLVL 174 >gi|89897057|ref|YP_520544.1| hypothetical protein DSY4311 [Desulfitobacterium hafniense Y51] gi|89336505|dbj|BAE86100.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1447 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 9/149 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + ++I EIG +++ K F F+ P + +++ ITD+ + Sbjct: 426 VLDLETTGFSAATEKITEIGIMKIQG-GKIIDQFGCFVNPE-KPIPARVVEVTNITDDMV 483 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D + +F + +F + + +AHNA FD+GF+ + + D D + +DTLS+A Sbjct: 484 RDAETIDQVFPKILNFI--EGSVLVAHNADFDMGFLKHNAKVLGYD-FDYTY-LDTLSLA 539 Query: 131 RRKHPSSRN-DLNSLCKRYGI--TISHRS 156 + P + L + K GI ++HR+ Sbjct: 540 KELFPDYKTYKLGRIAKNLGIKVEVAHRA 568 >gi|251793080|ref|YP_003007806.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700] gi|247534473|gb|ACS97719.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700] Length = 217 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 23/184 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ D+ET GL++K + ++E+ A+ L+ K + Q F G PE++K Sbjct: 23 VIIDVETAGLNAKTNALLELAAITVKMDDNGHLVPDQKCHFHIQPF---EGANIDPESIK 79 Query: 62 LHGI-TDEFLKDKPSFSSIFSEFWDFFN--EQNAEW-----IAHNAKFDVGFINAELQRI 113 +GI D L+ S + SE + +++AE +AHNA FD GFI A QR Sbjct: 80 FNGIDIDNPLRGAISENIAISEMFKMVRRAQKDAECQRSIIVAHNAAFDQGFIMAAAQRT 139 Query: 114 N--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 N ++P P DT +++ + L C+ I H AL D+ ++++ Sbjct: 140 NAKRNPFHPFSTFDTATLSGFMF--GQTVLIKACQAAKIPFDGSQAHSALYDTERTAELF 197 Query: 172 IKMM 175 M+ Sbjct: 198 CYMV 201 >gi|117928176|ref|YP_872727.1| hypothetical protein Acel_0968 [Acidothermus cellulolyticus 11B] gi|117648639|gb|ABK52741.1| DNA polymerase III, epsilon subunit [Acidothermus cellulolyticus 11B] Length = 566 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 20/172 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG I E+ AV++ + Q + P GR P L GITD Sbjct: 27 VVVDLETTGGAPGTGAITELAAVKVRG-GEVLGELQTLVNP-GRPIPPFITVLTGITDAM 84 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P ++ F +F + +AHNA FDVGF+ A D ++DT + Sbjct: 85 VAPAPPIDAVLPTFLEFAT--GSVLVAHNAPFDVGFLRAACAAAGYD-WPEFEVLDTARL 141 Query: 130 ARR---KHPSSRNDLNSLCK--RYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ARR + + L +L + R T +HR+ L+DVY + V Sbjct: 142 ARRVLTREEAPNCTLATLARVFRAKTTPNHRA----------LADVYATIDV 183 >gi|219667072|ref|YP_002457507.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense DCB-2] gi|219537332|gb|ACL19071.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense DCB-2] Length = 1447 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 9/149 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG + ++I EIG +++ K F F+ P + +++ ITD+ + Sbjct: 426 VLDLETTGFSAATEKITEIGIMKIQG-GKIIDQFGCFVNPE-KPIPARVVEVTNITDDMV 483 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D + +F + +F + + +AHNA FD+GF+ + + D D + +DTLS+A Sbjct: 484 RDAETIDQVFPKILNFI--EGSVLVAHNADFDMGFLKHNAKVLGYD-FDYTY-LDTLSLA 539 Query: 131 RRKHPSSRN-DLNSLCKRYGI--TISHRS 156 + P + L + K GI ++HR+ Sbjct: 540 KELFPDYKTYKLGRIAKNLGIKVEVAHRA 568 >gi|302557603|ref|ZP_07309945.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] gi|302475221|gb|EFL38314.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] Length = 240 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 23/160 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68 I FD+ETTG D + RI+ +E+ R + +L G +A+ +HGI+ E Sbjct: 9 IGFDLETTGTDPREARIVTGAVIEVRAGEPLGR--REWLADPGVPIPEDAVAVHGISGER 66 Query: 69 -FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 + +P + + + + +W + +A+NA FD+ ++AEL+R L Sbjct: 67 AAAEGRPADQVADAIAGVLTAYW----QTGVPVVAYNAAFDLTLLSAELRRYGLPSLSDR 122 Query: 119 ----DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 +P+ +ID +I R ++ + +L ++C YG+ + Sbjct: 123 LGGIEPAPVIDPYTIDRAVDRYRRGKRNLEAVCAEYGVVL 162 >gi|269214643|ref|ZP_05986966.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria lactamica ATCC 23970] gi|269209302|gb|EEZ75757.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria lactamica ATCC 23970] Length = 470 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ +L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAELTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + IAHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|311030323|ref|ZP_07708413.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. m3-13] Length = 844 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 9/172 (5%) Query: 6 KMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K R +V D+ETTG KND+II++GAV + D R F F+ P P +L Sbjct: 2 KQRFVVLDLETTGNTPKKNDKIIQVGAVLIEDGEIVER-FASFVNPQCTI-PPFIEQLTN 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + + P+F+ I + + + +AHN FD+ F+ EL + + P Sbjct: 60 INQDMVGRAPTFAQIAPMLCEML--KGSSLVAHNVPFDLSFLQHEL-KTSGHPTFSGNTF 116 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+ +AR P+ ++ L L Y ++H + H A D+ + +++K++ Sbjct: 117 DTVELARILLPTQKSYKLTDLSIFY--ELNHDNPHRADSDAEATAIIFLKLL 166 >gi|325854302|ref|ZP_08171501.1| exonuclease [Prevotella denticola CRIS 18C-A] gi|325484096|gb|EGC87030.1| exonuclease [Prevotella denticola CRIS 18C-A] Length = 284 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGLD NDRII+I +++L K R +F+ P + E +L GI+D+ Sbjct: 10 VVFDLETTGLDLVNDRIIQISFIKVLPDGKEERE-NIFINPE-KPIPTEVTQLTGISDKD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127 + D P+F E D F ++ N+ +FDV + E R D SR+ID Sbjct: 68 VADAPTFRQKAKELADRFT--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDFSKSRLIDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 +I H R +L + K Y Sbjct: 126 NIY---HKMERRNLAAAYKFY 143 >gi|323467153|gb|ADX70840.1| DNA polymerase III [Lactobacillus helveticus H10] Length = 317 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 8/156 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTGL DRI E+G V++ + ++ + P K KL+GIT+E L Sbjct: 35 MLDIETTGLSPFRDRITELGGVKVRNGQIVDQYTNLVKFPKNNKVPAFITKLNGITEEQL 94 Query: 71 KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+ +I EF +F + I +N FD+ F+ Q+ N P+ + +D L Sbjct: 95 TNEGIPAEQAI-KEFREFIGDDTI--IGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVLR 150 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +A+ +P N L +R G I+ +H L DS Sbjct: 151 LAKVYYPRQHNRLIDCMQRAG--IAQVEQHHGLADS 184 >gi|294790489|ref|ZP_06755647.1| DNA polymerase III domain protein [Scardovia inopinata F0304] gi|294458386|gb|EFG26739.1| DNA polymerase III domain protein [Scardovia inopinata F0304] Length = 241 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+FD ETTG + + RIIEIG + L +Q + P G + + L GI D Sbjct: 44 IIFDTETTG-NFSDQRIIEIGGLFLRKGVPIGE-WQQLINP-GVNITHFSQHLSGINDAM 100 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P S++ W + QN + +N FD+ +N E R+ + S +ID + I Sbjct: 101 IANEPPASTVIP--WFINSIQNLTIVGYNVNFDINALNEEANRLGMSGISVSNVIDVIDI 158 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 AR+ P+S + L + + +S KH AL D+ L + KM Sbjct: 159 ARQSLPNSPSYSLEQVA--ILLNVSDTEKHRALDDAILTWKCWQKM 202 >gi|269219439|ref|ZP_06163293.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269211135|gb|EEZ77475.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 589 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 11/171 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + I EIGAV++ +T F + P G+ L GIT Sbjct: 45 VVVDLETTGAKPGPESITEIGAVKVRG-GETVGEFSTLVNP-GQPIPAFITSLTGITTAM 102 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPS-RIIDTL 127 P +++ +F + + AHNA+FDVG + A D PS R++DT+ Sbjct: 103 TARAPRIAAVIPSLIEFLCAGPSTVVAAHNARFDVGHLKAAFA--GADFTWPSVRVLDTV 160 Query: 128 SIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ARR S L++L G T + H AL D+ DV M+ Sbjct: 161 ALARRAFSSDEVPNFKLSTLAGACGATTA--PNHRALDDARATVDVLHAML 209 >gi|260893685|ref|YP_003239782.1| DNA-directed DNA polymerase [Ammonifex degensii KC4] gi|260865826|gb|ACX52932.1| DNA-directed DNA polymerase [Ammonifex degensii KC4] Length = 233 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 15/170 (8%) Query: 10 IVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL D II +GAV L F + P GR+ P KL GI+ Sbjct: 48 VAFDLETTGLKPGAGDEIIALGAVRLRGNELLYPAFDQLVRP-GRRVPPLVEKLTGISSG 106 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P +S+ F + + + N FD+ F+N L+ + L ++D + Sbjct: 107 LLRYAPPLASVLPFFLGYLSRGFP--LGFNVAFDLAFLNQALKPHGR--LSEQAVLDVWT 162 Query: 129 IAR----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR R ++ +++ S K ++ +H AL D+ + + +++K+ Sbjct: 163 VARALDARCEHATMDEIASFLK-----VNLEGRHTALGDALIHARMWLKL 207 >gi|229168326|ref|ZP_04296051.1| DNA polymerase III alpha subunit [Bacillus cereus AH621] gi|228615152|gb|EEK72252.1| DNA polymerase III alpha subunit [Bacillus cereus AH621] Length = 318 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P ++ P+ + L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P + +IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127 Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ KH + + L +L + GI + S H A D + VY K Sbjct: 128 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|161507964|ref|YP_001577928.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348953|gb|ABX27627.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 317 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 8/156 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTGL DRI E+G V++ + ++ + P K KL+GIT+E + Sbjct: 35 MLDVETTGLSPFRDRITELGGVKVRNGQIVDQYTNLVKFPKNNKVPAFITKLNGITEEQI 94 Query: 71 KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+ +I EF +F + I +N FD+ F+ Q+ N P+ + +D L Sbjct: 95 TNEGIPAEQAI-KEFREFIGDDTI--IGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVLR 150 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P N L +R G I+ +H L DS Sbjct: 151 LARVYYPRQHNRLIDCMQRAG--IAQVEQHHGLADS 184 >gi|83757883|gb|ABC45996.1| exonuclease family [Salinibacter ruber DSM 13855] Length = 538 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 13/159 (8%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLKDKPSFSSIFSEFWD 85 +EIGAV++ D S +R FQ + P ++ P + K+ GIT + + P + ++ Sbjct: 1 MEIGAVKVRDGSVVDR-FQQLVNPQ--QSVPGRITKMTGITTGMVFEAPPADEVLPDYRA 57 Query: 86 FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSL 144 F + +AHN FD F++AELQR+ + L P+ + T+ +ARR P L+ L Sbjct: 58 FLG--DGILVAHNVSFDGSFLDAELQRMGDETL-PNETLCTVRLARRLLPGLDSKGLSRL 114 Query: 145 CKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + Y I + R H AL D+ S V + + SQ+ F Sbjct: 115 AQFYDIDVEGR--HRALGDAEATSVVLRRFV---SQLAF 148 >gi|217973787|ref|YP_002358538.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223] gi|217498922|gb|ACK47115.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223] Length = 300 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 3/105 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ETTGL + D+IIEI A++ S + F+ + PN K S + + GIT+ Sbjct: 20 IALDAETTGLSADVDKIIEIAAIKFDLLSNDHPVFEALINPN-VKVSRKITSITGITNAM 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 L D+ +F+ I + F + +A+NAKFD GF++ E + Sbjct: 79 LADQETFTDIAQDLKQFIGDL--PIVAYNAKFDKGFLDTEFANVG 121 >gi|229018800|ref|ZP_04175648.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273] gi|229025042|ref|ZP_04181470.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272] gi|228736248|gb|EEL86815.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272] gi|228742492|gb|EEL92644.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273] Length = 315 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 11/164 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RPIPNRITSLTGITNYR 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ + Sbjct: 69 VSDAPTIEEVLPFFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVFL 125 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 A++ KH + + L +L + GI + S H A D + VY Sbjct: 126 AKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVY 165 >gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22] gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22] Length = 331 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 12/197 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRII L + + + P + P + +HG+T + L Sbjct: 24 VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNP---ERDPGPVWIHGLTSDVL 79 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F I EF ++ +AHNA FD I E R + R+ T++++ Sbjct: 80 EGAPLFRDIAQEFSARLADRVL--VAHNAVFDWSMIAREYARAETEAPVRQRLC-TIALS 136 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + P + L SL +G+ + R+ H AL D+ +L++ + + + N +E Sbjct: 137 KELGLPLPNHKLESLAAHFGV-VQQRAHH-ALDDARVLAEAFRPSLRAAAASNVRLPLHE 194 Query: 190 DRFFKE--EKKTVPNIS 204 R E E P I Sbjct: 195 CRPLTEWRESPAAPRIG 211 >gi|254786953|ref|YP_003074382.1| ribonuclease T [Teredinibacter turnerae T7901] gi|237685615|gb|ACR12879.1| ribonuclease T [Teredinibacter turnerae T7901] Length = 211 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G ++ D ++EI AV L +D + + + TF + P G AL+ G Sbjct: 21 VIIDVETGGFNAATDALLEIAAVTLHMDDNGFLQRDETFSFHVEPFEGANIEKAALEFTG 80 Query: 65 I-----TDEFLKDKPSFSSIFS---EFWDFFNEQNAEWIAHNAKFDVGFINAELQR--IN 114 I E + + + IF+ + + A + HNA FD+ F+NA R I Sbjct: 81 IDLESEDREAVPEAIALGDIFAGVRKAVKGYGCNRAVLVGHNAHFDLNFLNAAAARSDIK 140 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++ L + CK G+ S+R H A D+ +D++ M Sbjct: 141 RNPFHPFSCFDTATLCGLIF--GHTVLATSCKLAGLEFSNREAHSAAYDAEKTADLFCLM 198 Query: 175 M 175 + Sbjct: 199 V 199 >gi|229061173|ref|ZP_04198523.1| DNA polymerase III alpha subunit [Bacillus cereus AH603] gi|228718044|gb|EEL69684.1| DNA polymerase III alpha subunit [Bacillus cereus AH603] Length = 318 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P ++ P+ + L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P + +IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127 Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ KH + + L +L + GI + S H A D + VY K Sbjct: 128 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|229134413|ref|ZP_04263226.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196] gi|228649034|gb|EEL05056.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196] Length = 318 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P ++ P+ + L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P + +IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127 Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ KH + + L +L + GI + S H A D + VY K Sbjct: 128 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|309379715|emb|CBX21704.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 326 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ +L GI Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV----NPKKPIPQFVAELTGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + IAHN++FD F+ E R P+ + Sbjct: 75 SDGMVVDAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 131 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173 >gi|325103921|ref|YP_004273575.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145] gi|324972769|gb|ADY51753.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145] Length = 459 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 9/149 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69 + DIETTG + R+ EI AV + D + + + P +++ P ++ L GI+D+ Sbjct: 9 IVDIETTGAYAGGSRMTEI-AVLIHDGVQVVEEYHTLINP--KQSIPHYIQVLTGISDDM 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P F ++ ++ + Q+ ++AHN FD F++++L+ P + T+ + Sbjct: 66 VSDAPEFENVAAKVFSLL--QDKIFVAHNVGFDYSFVHSQLRECGYYLRSPK--LCTVRL 121 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSK 157 +R+ P L LC+ GI I+ R + Sbjct: 122 SRKCFPGLPSYSLGKLCQSLGIAINDRHR 150 >gi|294853583|ref|ZP_06794255.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026] gi|294819238|gb|EFG36238.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026] Length = 191 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 4/149 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + P + +SP+A Sbjct: 33 IHTRKKRVIVFDTETTGI-LPYDRIITLGAVKIEGGELLTQSLYLIFDPR-KDSSPQAEA 90 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 91 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQP 149 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGI 150 + T+ ARR L+ +R + Sbjct: 150 -VYCTMDGARRLWRGDSTKLDHCSQRLAL 177 >gi|148977600|ref|ZP_01814176.1| ribonuclease T [Vibrionales bacterium SWAT-3] gi|145963115|gb|EDK28383.1| ribonuclease T [Vibrionales bacterium SWAT-3] Length = 211 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A+ L +D + + T + P G AL +G Sbjct: 20 VVIDVETAGFNAETDALLEICAITLKMDENGDLQPASTLHFHIEPFEGANIEQAALDFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD+ F+NA +R + Sbjct: 80 IKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDLNFVNAASERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L C+ G+ ++ H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTAALSGLAY--GQTVLAKACRTAGMEFDNKEAHSALYDTQKTTELFCG 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|188995649|ref|YP_001929901.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis ATCC 33277] gi|188595329|dbj|BAG34304.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis ATCC 33277] Length = 259 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 24/171 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTG+D DRI+EI ++++ D S+ +T ++ P R PE+ +HGITDE Sbjct: 10 IFFDLETTGVDLVRDRIVEISILKVMPDGSEECKTRRI--NPE-RSIPPESTAIHGITDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIA-------HNAKFDVGFINAELQRINKD-PLDP 120 +KD P F S+ A+WI ++ +FDV + E R D L Sbjct: 67 DVKDCPPFRSVAKSL--------AQWIEGCDLAGFNSTRFDVPMLVEEFLRAGVDIDLRH 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++ID +I + P + R+ + + H A D+ DV+ Sbjct: 119 RKLIDVQTIFHKMEPRTL----EAATRFYCNRTLENAHSAEADTRATYDVF 165 >gi|81428950|ref|YP_395950.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus sakei subsp. sakei 23K] gi|78610592|emb|CAI55643.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus sakei subsp. sakei 23K] Length = 178 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 7/115 (6%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI ++ + P F ++ FF Q +AHNA FD+G + + LQ + D +P Sbjct: 51 QIHGIYEDDVAQAPKFDQVWPHIAPFFTPQKL-VVAHNATFDIGVLRSTLQ--HYDIPEP 107 Query: 121 SRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +DTL+ +RR +P +N LN+LC I + + H AL DS + + IK Sbjct: 108 HYLALDTLTTSRRLYPQFKNHKLNTLCTNLEIPL--ENHHNALADSIACAKILIK 160 >gi|113460646|ref|YP_718712.1| ribonuclease T [Haemophilus somnus 129PT] gi|123327179|sp|Q0I251|RNT_HAES1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|112822689|gb|ABI24778.1| RNAse T [Haemophilus somnus 129PT] Length = 218 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 26/195 (13%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVE--------LLDYSKTNRTFQVFLCP 50 + KN+ R ++ D+ET G +++ D ++E+ A+ L+ K + Q F Sbjct: 13 LLKNRFRGFFPVIIDVETAGFNAQTDALLELAAITLKMDENGLLVPDEKCHFHIQPF--- 69 Query: 51 NGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFD 102 G +PE+LK +GI D L+ S + SE + Q + +AHNA FD Sbjct: 70 EGANINPESLKFNGIDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNATFD 129 Query: 103 VGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 F+ A +R I ++P P I DT +++ + L C+ I+ + H A Sbjct: 130 QSFVMAAAERTKIKRNPFHPFSIFDTATLSGFMF--GQTVLVKGCQVANISFDGKKAHSA 187 Query: 161 LLDSHLLSDVYIKMM 175 L D+ ++++ M+ Sbjct: 188 LYDAERTAELFCYMV 202 >gi|223937241|ref|ZP_03629147.1| DNA-directed DNA polymerase [bacterium Ellin514] gi|223894026|gb|EEF60481.1| DNA-directed DNA polymerase [bacterium Ellin514] Length = 199 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 10/170 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D II+I AV + + ++ +F ++ P GR S GIT++ Sbjct: 6 VIFDLETTGLSSYQDEIIQIAAVRMSNGVVCSSDSFFSYVNP-GRSISSFITSYTGITNQ 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P ++ +F + + A IAHN +FD+ F++A R N P D++ Sbjct: 65 DVGDAPRVGTVLKDFSRYAGK--ATLIAHNGHRFDMKFLHAGCSR-NALPTRAVNYHDSI 121 Query: 128 SIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R K P + L+S+ R I+ +H A D LL++ KM Sbjct: 122 YLSRLVWGKCPGG-HGLDSVLNRLQISNHGVRRHDARGDVELLAEAVEKM 170 >gi|227894158|ref|ZP_04011963.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047] gi|227864030|gb|EEJ71451.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047] Length = 318 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 9/157 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTGL DRI E+GAV++ + ++ + P K KL+GIT+E + Sbjct: 35 MLDIETTGLSPYRDRITELGAVKVRNNQIVDQYTNLVKFPKNNKVPAFITKLNGITEEQI 94 Query: 71 KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+ +I EF +F + I +N FD+ F+ Q+ N P+ + +D L Sbjct: 95 VNEGIPAEQAI-KEFREFIGDD--PIIGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVLR 150 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P R N L +R G I+ +H L DS Sbjct: 151 LARAYYPRERHNRLIDCMQRAG--IAQVEQHHGLADS 185 >gi|282600891|ref|ZP_06257782.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM 15176] gi|282571272|gb|EFB76807.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM 15176] Length = 1347 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 11/170 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGLDS + + EIGAV ++ K N + F F+ P G+ + ++L GI D Sbjct: 322 VVFDTETTGLDSNVEALTEIGAV-YVENGKINEEKKFCTFVNP-GKPIPQKVVELTGIND 379 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126 + D P+ F +F + +AHNA FD+ FI ++ D + IDT Sbjct: 380 AMVADAPTPEEAIRAFKEFCGDH--VLVAHNAHSFDMLFIRKAGEKAGIS-FDENTYIDT 436 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L + + P RN L+++ K + I + H A+ D+ L+ ++ M+ Sbjct: 437 LPMGQALFPGLRNYKLDTINKH--LEIPPFNHHRAVDDAMALARIFEVML 484 >gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] Length = 958 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 15/153 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPEALK-LHGI 65 + D+ETTG ++DR+IE+ AV D + F + CP P+ ++ L GI Sbjct: 7 VAIDVETTGTSPEHDRLIEVAAVRFEDGREIG-CFSRLIDPGCP-----VPQRIQHLTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 L KP + + F + +AHNA FDV F+ A R + P+ D Sbjct: 61 HPAMLAGKPRIEEVVPDLASFLGD--LPLVAHNAPFDVAFLQAAFARAGRSL--PNWSYD 116 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSK 157 T +AR P +RN L +L + G+ + H + Sbjct: 117 TAELARVALPLARNHRLATLAELLGLPLEHHHR 149 >gi|302561692|ref|ZP_07314034.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] gi|302479310|gb|EFL42403.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] Length = 241 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 13/154 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D +NDRI+ A+ + D S +L G A ++HG+T+E L Sbjct: 11 AFDTETTGVDVENDRIVS-AALVVQDASGARPRVTRWLVNPGVPVPAAATEVHGLTEEHL 69 Query: 71 KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPL------DP 120 + + + + E + EQ A + NA FD+ ++ EL+R L P Sbjct: 70 QRNGRWPAPVMYEMAEALAEQAAVGRPLVVMNAPFDLTLLDRELRRHRASSLGRWLERSP 129 Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 R++D + + ++ R L LC YG+ + Sbjct: 130 LRVLDPWVLDKHLDRYRKGRRTLTDLCAHYGVPL 163 >gi|332980705|ref|YP_004462146.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1 BON] gi|332698383|gb|AEE95324.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1 BON] Length = 288 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 + D+ETTGL+ ND+IIE+ AV+ D +R F + N + P + +++ ITDE Sbjct: 116 VAIDLETTGLNPINDKIIEVAAVKFKDGQIIDR-FTTLI--NPEIHIPSGITRINHITDE 172 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + + +F +++ + HNA FD+ F+ D + IDTL Sbjct: 173 MVKDAPVLAEVMPCLVNFI--EDSILVMHNASFDLKFLKHHAMNFGHD--INNSYIDTLP 228 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R N L ++ G I S H A D+ + V IK + Sbjct: 229 TCRNIFSGLENYKLPTIASHLG--ICGDSFHRACNDAEICGQVLIKCI 274 >gi|269213464|ref|ZP_05982022.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria cinerea ATCC 14685] gi|269146173|gb|EEZ72591.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria cinerea ATCC 14685] Length = 470 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVSGLTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + IAHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045] gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045] Length = 336 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 10/162 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRII L + + + P + P + +HG+T E L Sbjct: 24 VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTTVNP---ERDPGPVWIHGLTSEAL 79 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + EF + +AHNA FD I E R ++P R+ T++++ Sbjct: 80 EGAPLFHEVAGEFAARLTGRV--LVAHNAVFDWSMIAREYARAGQEPPVRQRLC-TIALS 136 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + P + L +L +G+ R H AL D+ +L++ + Sbjct: 137 KALALPLPNHKLETLAAHFGVV--QRRAHHALDDARVLAEAF 176 >gi|260663059|ref|ZP_05863952.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus fermentum 28-3-CHN] gi|260552680|gb|EEX25680.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus fermentum 28-3-CHN] Length = 946 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 19/172 (11%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTG K RII+IG V + D N F+ + P R P + +L GI + Sbjct: 16 VVDLETTGTSVKTGSRIIQIGCVLVQDGQVINE-FETKINP--RTVVPLTIEQLTGIKNN 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127 +KD P F + ++ ++AHN FD F+NAE +R + PL P+ IDT+ Sbjct: 73 DVKDAPLFEDVAPTLKSLLDD--TIFVAHNVNFDFPFLNAEFERAGEAPLTIPA--IDTV 128 Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++++ P++ + DL S + I H H A+ D+ + + I+++ Sbjct: 129 TLSQILMPTAPSFRLRDLTSY-----LAIDHDQPHSAVSDAVATAHLLIELL 175 >gi|319649890|ref|ZP_08004041.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2] gi|317398470|gb|EFV79157.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2] Length = 242 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 8/167 (4%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFDIETTG K D+II IGAV+++ + +F L + S E +L G+++ Sbjct: 60 VFDIETTGFYPDKGDQIISIGAVKIIKGKVSEDSFYS-LARFEKPLSNEIKELTGLSEAD 118 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P S + F +F ++ +AH+A + F+ ++ + P RI+DT + Sbjct: 119 LEKAPPLSEVLISFLEFV--KDMPLVAHHANHEKSFMQHSCWKLFRTPFK-YRILDTSFL 175 Query: 130 AR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R H S L LC+ Y I + + +H AL D+ L + ++ +++ Sbjct: 176 YRIADHNKSFWRLEDLCEFYSIPV--KDRHHALGDAKLTALLWCRLI 220 >gi|284030730|ref|YP_003380661.1| DNA polymerase III subunit epsilon [Kribbella flavida DSM 17836] gi|283810023|gb|ADB31862.1| DNA polymerase III, epsilon subunit [Kribbella flavida DSM 17836] Length = 602 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 85/189 (44%), Gaps = 22/189 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG + I EIGAV++ FQ + P P L GITD Sbjct: 40 CVVDLETTGGAPGDSGITEIGAVKVRAGELVGE-FQSLVNP-AEPIPPFIAVLTGITDLM 97 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 + P S+ F +F + +AHNA FDVGF+ + Q D P P ++DT Sbjct: 98 VASSPRIGSVLPAFLEF--ARGCVLVAHNAPFDVGFLKHDSQVHGYDWPDFP--VVDTAL 153 Query: 129 IARR-----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQI 181 +ARR + P+ + L +L K + T + H AL D+ DV + VG Sbjct: 154 LARRVLTPDEVPNCK--LGTLAKLFRATTT--PNHRALSDARATVDVLHGLFERVG---- 205 Query: 182 NFGFKTNED 190 + G +T ED Sbjct: 206 SLGVQTLED 214 >gi|169831719|ref|YP_001717701.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator MP104C] gi|169638563|gb|ACA60069.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator MP104C] Length = 236 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 11/158 (6%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 V D ETTGL D +I + V ++ N F + P + PE A + GIT E Sbjct: 51 VIDTETTGLRPDAGDEVISVACVRVVSAKIQNDYFYTLVDPE--REVPELAATITGITTE 108 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ +P + E I N +FD+ F+N L+R L+P ++D L Sbjct: 109 RVQGQPVLEKVLPRM---LREMAGGVITGFNIQFDLVFLNNGLKRKCGTTLNPPMVLDVL 165 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 S+ R P +R L ++ + Y I++ R H AL D+ Sbjct: 166 SLCRILKPRARTFGLGAMAREYQISVKDR--HNALGDA 201 >gi|184155667|ref|YP_001844007.1| helicase [Lactobacillus fermentum IFO 3956] gi|183227011|dbj|BAG27527.1| helicase [Lactobacillus fermentum IFO 3956] Length = 943 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 19/172 (11%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTG K RII+IG V + D N F+ + P R P + +L GI + Sbjct: 13 VVDLETTGTSVKTGSRIIQIGCVLVQDGQVINE-FETKINP--RTVVPLTIEQLTGIKNN 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127 +KD P F + ++ ++AHN FD F+NAE +R + PL P+ IDT+ Sbjct: 70 DVKDAPLFEDVAPTLKSLLDD--TIFVAHNVNFDFPFLNAEFERAGEAPLTIPA--IDTV 125 Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++++ P++ + DL S + I H H A+ D+ + + I+++ Sbjct: 126 TLSQILMPTAPSFRLRDLTSY-----LAIDHDQPHSAVSDAVATAHLLIELL 172 >gi|332291593|ref|YP_004430202.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332169679|gb|AEE18934.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 232 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 15/176 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +VFD ETTGL K DRI+ IGAV +++ ++ +++L + K PE+ K+HGI Sbjct: 46 RFVVFDTETTGLHYKEDRILSIGAVTVINNEISIAQSLELYLKQDIYK--PESAKIHGIL 103 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ + + +F I H+ FDV IN+ L+R L +R++DT Sbjct: 104 RNGSYEQVNEQEAIEKCLEFIGTDI--LIGHHIGFDVAVINSALKRAQLGKLK-NRVLDT 160 Query: 127 LSIARR-KHP------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ +R HP R L+ L + I + R H + D+ + + +IK++ Sbjct: 161 ETLYKRLVHPINRPLQEKRYTLDELAEALKIPLHDR--HTSAGDALITAIAFIKIV 214 >gi|225018549|ref|ZP_03707741.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum DSM 5476] gi|224948681|gb|EEG29890.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum DSM 5476] Length = 319 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 93/221 (42%), Gaps = 23/221 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG D D IIE+GA+ + + + +F P R ++L GI++E Sbjct: 23 VVIDLETTGYDPHRDEIIELGALRIHE-GEVVESFSSLTKPQ-RDLDDYIIQLTGISNEM 80 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P S +F + DF + + HN FDV FI + L + ++D L + Sbjct: 81 LASAPELSDVFPRYLDFIGDSIV--VGHNVHFDVNFIYDTCIK-ESLKLFTNDLVDLLWL 137 Query: 130 ARRKHPSSRNDLNS--LCKRYG-ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +R+ P DL S LC+ I H +L D + + K + + +G Sbjct: 138 SRKLLP----DLTSHKLCRVSSHFNICVEGMHRSLFDCKTTFECFEKCRILAKE-RYGQV 192 Query: 187 TNEDRFFKEEKKT----------VPNISLLKRDKPLFTRIT 217 N + F+ K+T +P PLF ++ Sbjct: 193 DNLSQVFRPIKRTPCPKLKACDILPECDEFDEAHPLFNKVC 233 >gi|116492693|ref|YP_804428.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745] gi|116102843|gb|ABJ67986.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745] Length = 929 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 19/177 (10%) Query: 5 NKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KL 62 NK + V D+E TG D D RII+IG ++ K TFQ + P ++ P + KL Sbjct: 2 NKTKYAVVDLEMTGSDFDGDNRIIQIGCA-FVENGKIVDTFQSKVNP--QRPIPAGITKL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PS 121 GITDE +++ P F+ I E + + ++AHN +FD F+N EL R L+ P+ Sbjct: 59 TGITDEQVQNAPKFNDIVDEVYRKL--VDTVFVAHNVEFDFPFLNQELVRSGYPELNIPA 116 Query: 122 RIIDTLSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+S+++ ++ DL S K I H H A D+ +++ I + Sbjct: 117 --VDTVSLSQIVFSFTKGYRLRDLTSYLK-----IEHDDPHSADSDAIATANLLIAI 166 >gi|317133746|ref|YP_004089657.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] gi|315450208|gb|ADU23771.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] Length = 284 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 12/166 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQ---VFLCPNGRKNSPEALKLHGIT 66 V D+ETTG +K+ + + ++ ++D S T + + VF+ P N ++ G T Sbjct: 26 VIDLETTGRSAKDSYVFQFAGLKCIIDKSLTPKIIESLCVFIKPEVPLNE-RITEITGFT 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LKDK ++F F + N +HN F+ F+NA R N P+ IIDT Sbjct: 85 NEDLKDKADEETVFPRIKKFMD--NCIMCSHNTAFEESFMNAMYAR-NGCVFKPAEIIDT 141 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITIS---HRSKHGALLDSHLLS 168 L ++R H ++ L + +RYGI H ++ ++ LLS Sbjct: 142 LKMSRDLHKEEKSHKLGVIAERYGIADGVKFHDARDDTIICGRLLS 187 >gi|262365379|gb|ACY61936.1| DNA polymerase III, epsilon chain [Yersinia pestis D182038] Length = 122 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 39/58 (67%) Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + + F + Sbjct: 1 MARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLTFSME 58 >gi|59711532|ref|YP_204308.1| ribonuclease T [Vibrio fischeri ES114] gi|197335112|ref|YP_002155688.1| ribonuclease T [Vibrio fischeri MJ11] gi|59479633|gb|AAW85420.1| ribonuclease T (RNase T) [Vibrio fischeri ES114] gi|197316602|gb|ACH66049.1| ribonuclease T [Vibrio fischeri MJ11] Length = 222 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 21/193 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGR 53 + KN+ R +V D+ET G ++K D ++EI AV L + N T + P G Sbjct: 10 LLKNRFRGYFPVVIDVETAGFNAKTDALLEICAVTLAMDEQGNLKPATTIHFHVTPFEGA 69 Query: 54 KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVG 104 EAL+ +GI D F L+ + E + + Q A +AHNA FD Sbjct: 70 NIEKEALEFNGIRDPFSPLRGAVTEDVALKEIFKLVRKEQKQHDCQRAIMVAHNAHFDHS 129 Query: 105 FI--NAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ A ++ + P P DT +I+ + L CK G+ + H AL Sbjct: 130 FVMEAAARTKLKRIPFHPFCTFDTAAISGLA--LGQTVLAKACKTAGMDFDGKEAHSALY 187 Query: 163 DSHLLSDVYIKMM 175 D+ ++++ +++ Sbjct: 188 DTEKTAELFCRIV 200 >gi|332290155|ref|YP_004421007.1| ribonuclease T [Gallibacterium anatis UMN179] gi|330433051|gb|AEC18110.1| ribonuclease T [Gallibacterium anatis UMN179] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 27/186 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ D+ET+GL+++ D ++E+ A+ + L + FQ+ L G P +LK++ Sbjct: 33 VIVDVETSGLNAQTDGLLELAAITVKMDEQGLLHPDEKCHFQIKLF-EGANVDPNSLKIN 91 Query: 64 GITDEFLKDKPSFSSI--FSEFWDFF-----NEQNAEW-----IAHNAKFDVGFINAELQ 111 GI D P ++ + FF ++ AE +AHNA FD F+ A + Sbjct: 92 GIN----PDDPQREAVDELTALTGFFQMVRRGQKAAECKRSILVAHNAMFDYNFLMAAIN 147 Query: 112 R--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 R I ++P P DT ++A + L + C GI H AL D+ ++ Sbjct: 148 RTGIKRNPFHPFSTFDTATLAGFMF--GQTVLRTACDNAGIPFEPSKAHSALYDTEKTAE 205 Query: 170 VYIKMM 175 ++ M+ Sbjct: 206 LFCLMV 211 >gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1] gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1] Length = 956 Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 15/168 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 I D+ETTGL++ D IIEI AV+ + + TF + P + P + +L GIT + Sbjct: 6 IAIDVETTGLEAGVDEIIEIAAVK-FNADEVLETFSTLVQP--VHSLPLNSSRLTGITAD 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + F F +N + HN +FD+ + A+ R+ P DT Sbjct: 63 MLASAPRFAEVAPRFAAFL--KNYPLVGHNVEFDLRMLRAQGMRL------PQPAFDTFE 114 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A P + L++L G I H H AL D+ + +++ ++ Sbjct: 115 LATLLMPRTPAYRLSALAATLG--IHHDEAHRALSDADVTRQIFLYLL 160 >gi|332971471|gb|EGK10424.1| ribonuclease T [Psychrobacter sp. 1501(2011)] Length = 268 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 20/191 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R K +V D+ET G D+K D ++E+ + ++ + L P G Sbjct: 57 RFRKFLPVVVDVETAGFDAKTDALLELACIPIIMDEQGKFIPGEALNAHLNPFEGANLEQ 116 Query: 58 EALKLHGITDE-------FLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFIN 107 AL GI +++P+ IF E E + + HNA FD+ F+N Sbjct: 117 RALDFTGIDPNNPMRKAIAEEEQPALRRIFKELKAVRKENDCLKCILVGHNAHFDLSFLN 176 Query: 108 AELQRINK---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A ++R N +P ++DT++++ + L CK GI S H AL D+ Sbjct: 177 AAIERTNSKNHNPFHQFSVLDTVTLSALAF--GQTVLARACKAAGIEFSGTEAHSALYDT 234 Query: 165 HLLSDVYIKMM 175 ++++ ++ Sbjct: 235 QKTAELFCHIL 245 >gi|71894029|ref|YP_278137.1| DNA polymerase III PolC [Mycoplasma synoviae 53] gi|71850817|gb|AAZ43426.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53] Length = 1451 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 13/174 (7%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFDIETT L + + IIE A + + + ++ +F+ + K S +L IT+ Sbjct: 410 RYVVFDIETTSLSAYHGEIIEFAATIIENKAVVDKV-DIFI-KSKEKLSHFTTRLTSITN 467 Query: 68 EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--II 124 E L K + +D N A +AHNA FD F+ +++ +++ + + I Sbjct: 468 EMLDQKGIELKEALQKIYDVLNNNVA--VAHNANFDYNFL---IEKFDQNNMQAPKCTFI 522 Query: 125 DTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 D+L ++R +H N LN C+ + H AL D+ +L+D +I+ + Sbjct: 523 DSLVVSRILFEHRDKHN-LNEFCRNLSVNYDTEKAHRALYDTEVLADAWIEATL 575 >gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER] gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER] Length = 1461 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 16/173 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68 + FDIETTGL + IIE G++ + K R Q F+ C K P L GIT+ Sbjct: 427 VSFDIETTGLCPRFAEIIEYGSLPIHSNMKYGRKTQFFIKCQEPIK--PFTENLTGITNA 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ S + +N+ N + +AHNA+FD F+ + R K +IDTL Sbjct: 485 MIEK--SGLELKEALQKIYNDLNGKIALAHNARFDFNFLKEKF-RQAKIEFPNVTVIDTL 541 Query: 128 SIARRKHPSS-RNDLNSLCKRYGI----TISHRSKHGALLDSHLLSDVYIKMM 175 ++R P + ++ L + R G+ T++HR + D+ +L++V++ +M Sbjct: 542 IVSRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDY----DAKVLAEVWVALM 590 >gi|304440352|ref|ZP_07400241.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371104|gb|EFM24721.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 296 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 11/162 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIET GLD K ++IIEIGA++ S + F + + K ++L GITD+ Sbjct: 130 VFLDIETDGLDEKTNKIIEIGAIK----SDSKEEFHKIVKID-TKLPKNIIELTGITDKE 184 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ + I E +F ++ + + KFD+ FIN +L+ D L ++ D + Sbjct: 185 LESGENIKEILKELKEFIGLEDL--VGYGIKFDIKFINRKLKLNGLDVL-TNKTWDLMDF 241 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +R+ N L ++ K YG I + H AL DS L+ ++ Sbjct: 242 VKREKSFLENYKLETVLKEYG--IDKKVPHRALEDSKLIYEL 281 >gi|325478691|gb|EGC81802.1| CRISPR-associated endoribonuclease Cas2 [Anaerococcus prevotii ACS-065-V-Col13] Length = 292 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 17/169 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V DIET+GLD + +IIEIGAV E+LD ++ L K S E +KL Sbjct: 126 VVVDIETSGLDYEKHKIIEIGAVLTNSQGEVLDKFES-------LIRQEIKLSNEIIKLT 178 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD L + + +F F +N + +N FD+ F+N L++ + + + Sbjct: 179 GITDNDLINGGDEKKVLEDFVCFI--KNHPLVGYNFNFDMKFLNYNLEKNSLKEITNTTY 236 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDV 170 + R K L ++ K YGI + HR+ AL+ +L S V Sbjct: 237 DLKTYVKREKMFLKNYKLETVLKEYGIKKKVDHRALADALVTVNLASQV 285 >gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] Length = 330 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 12/197 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRII L + + + P + P + +HG+T E L Sbjct: 25 VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTMVNP---ERDPGPVWIHGLTSEAL 80 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F I EF + +AHNA FD I E R ++ R+ T++++ Sbjct: 81 EGAPLFQDIAEEFTTRL--EGRVLVAHNAVFDWQMIAREYARAQREVPVRQRLC-TIALS 137 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + P + L SL YG+ R H AL D+ +L++ + + + E Sbjct: 138 KELGLPLPNHKLESLAAHYGVV--QRRAHHALDDARVLAEAFQPSLRAAAAGGVRLPLLE 195 Query: 190 DRFFKE--EKKTVPNIS 204 R E ++ P I Sbjct: 196 CRPLTEWSDRPATPRIG 212 >gi|29828689|ref|NP_823323.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis MA-4680] gi|29605793|dbj|BAC69858.1| putative DNA polymerase III epsilon subunit [Streptomyces avermitilis MA-4680] Length = 240 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 23/158 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68 I FD+ETTG D + RI+ +E+ R + +L G + +A+ +HGIT+E Sbjct: 9 IGFDLETTGTDPREARIVTGAVIEVKGQEPVGR--REWLADPGVEIPADAVAVHGITNER 66 Query: 69 -FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 + P S + +W +A+NA FD+ ++AEL+R L Sbjct: 67 AAAEGGPPDRVAESLAQTLVGYW----RTGVPVVAYNATFDLTLLSAELRRYGLPSLRER 122 Query: 119 ----DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGI 150 DP+ +ID +I R ++ + +L ++C YG+ Sbjct: 123 LDGRDPAPVIDPYTIDRWVDRYRRGKRNLEAVCTEYGV 160 >gi|257867744|ref|ZP_05647397.1| DNA polymerase III [Enterococcus casseliflavus EC30] gi|257874072|ref|ZP_05653725.1| DNA polymerase III [Enterococcus casseliflavus EC10] gi|257801827|gb|EEV30730.1| DNA polymerase III [Enterococcus casseliflavus EC30] gi|257808236|gb|EEV37058.1| DNA polymerase III [Enterococcus casseliflavus EC10] Length = 918 Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG DS DRII+ G V + D NR F + P+ R+ S + +L IT++ + Sbjct: 7 VVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTHITNQQV 64 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 P F I ++ + N ++AHN FD F++ E R PL P IDT+ + Sbjct: 65 SKAPYFEDIADTIYNLLS--NTIFVAHNIYFDYHFLSNEFVRCGLPPLSIPG--IDTVEL 120 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 A+ P+ S L L G H + H A D+ + + +++ Sbjct: 121 AQVFLPTESSFRLGDLADSIG--FRHDNPHQADSDAEVTAALFL 162 >gi|89073343|ref|ZP_01159867.1| ribonuclease T [Photobacterium sp. SKA34] gi|89050830|gb|EAR56304.1| ribonuclease T [Photobacterium sp. SKA34] Length = 221 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L +D + K T + P G EAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGAILHKEALDFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFW-DFFNEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD F+ A +R + Sbjct: 80 IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C+ I +R H AL D+ ++++ + Sbjct: 140 KRNPFHPFATFDTAALSGLAF--GQTVLAKACQTANIPFDNREAHSALYDTERTAELFCE 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|315038988|ref|YP_004032556.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112] gi|325957414|ref|YP_004292826.1| DNA polymerase III [Lactobacillus acidophilus 30SC] gi|312277121|gb|ADQ59761.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112] gi|325333979|gb|ADZ07887.1| DNA polymerase III [Lactobacillus acidophilus 30SC] gi|327184122|gb|AEA32569.1| DNA polymerase III [Lactobacillus amylovorus GRL 1118] Length = 318 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 9/157 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTGL DRI E+GAV++ + ++ + P K KL+GIT+E + Sbjct: 35 MLDIETTGLSPYRDRITELGAVKVRNGQIVDQYTNLIKFPKNNKVPAFITKLNGITEEQI 94 Query: 71 KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+ +I EF +F ++ I +N FD+ F+ +L + K P+ + +D L Sbjct: 95 VNEGIPAEQAI-KEFREFIDDD--IIIGYNVNFDLNFL-YDLSQKYKLPILNNDYVDVLR 150 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P R N L +R G I+ +H L DS Sbjct: 151 LARAYYPRERHNRLIDCMQRAG--IAQVEEHHGLADS 185 >gi|90579159|ref|ZP_01234969.1| ribonuclease T [Vibrio angustum S14] gi|90439992|gb|EAS65173.1| ribonuclease T [Vibrio angustum S14] Length = 221 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L +D + K T + P G EAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGAILHKEALDFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFW-DFFNEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD F+ A +R + Sbjct: 80 IRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHSFVMAASERAKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C+ I +R H AL D+ ++++ + Sbjct: 140 KRNPFHPFATFDTAALSGLAF--GQTVLAKACQTANIPFDNREAHSALYDTERTAELFCE 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|325208398|gb|ADZ03850.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis NZ-05/33] Length = 469 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 27 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 82 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R P+ + Sbjct: 83 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 138 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 139 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 181 >gi|326773509|ref|ZP_08232792.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] gi|326636739|gb|EGE37642.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] Length = 465 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + EIGAV++ + F + P G + L GIT+ Sbjct: 23 VVVDLETTGGAPGARSVTEIGAVKVRG-GQVLAEFSTLVNP-GVAIPAQITMLTGITNAM 80 Query: 70 LKDKPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P + F D+ + + +AHNA+FDVG + + + +P R++DTL Sbjct: 81 VAGAPGVRTCVEAFLDWADLLADDVILVAHNARFDVGHLRGAAAAVGLEWPEP-RVLDTL 139 Query: 128 SIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ARR S + L +L G R H AL D+ DV Sbjct: 140 ALARRAWTRSEVPNHKLGTLAAFVG--SQTRPTHRALDDARATVDV 183 >gi|169832144|ref|YP_001718126.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis audaxviator MP104C] gi|169638988|gb|ACA60494.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis audaxviator MP104C] Length = 247 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 13/167 (7%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALK 61 +K+R +V D ETTG + + D +I +GAV + + R QVF L GR P Sbjct: 51 SKLRFVVLDTETTGFEPAGGDEVIALGAVVV--KNGRPRPEQVFHRLVNPGRSIPPLVTA 108 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DP 120 L GI+DE + + ++ F +F N H+ FD+ F+N L+ + + +P Sbjct: 109 LTGISDEAVAGEDDLVAVLPCFLEFLG--NDCLAGHHLGFDLEFLNLRLREFSGAAIRNP 166 Query: 121 SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHL 166 + +DT IAR +P+ + L+++ +GI + R H AL D+ L Sbjct: 167 A--LDTAVIARALYPALKYFSLDAMLSFHGIEPAGR--HTALGDAWL 209 >gi|254672325|emb|CBA05474.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria meningitidis alpha275] Length = 312 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ + L GI Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLV----NPQKPIPQFVAGLTGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R P+ + Sbjct: 75 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 131 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173 >gi|325204438|gb|ADY99891.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240355] Length = 470 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|317128618|ref|YP_004094900.1| DnaQ family exonuclease/DinG family helicase [Bacillus cellulosilyticus DSM 2522] gi|315473566|gb|ADU30169.1| DnaQ family exonuclease/DinG family helicase [Bacillus cellulosilyticus DSM 2522] Length = 922 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D+ETTG+ K DRII+I V +++ K F ++ P R P L I Sbjct: 3 RFVIVDVETTGVSFIKGDRIIQIAFV-VIEGKKIIDRFNSYVNPM-RDIPPFIRSLTNIN 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D +KD P+F + + A ++AHN FD+ FIN EL + L +IDT Sbjct: 61 DNEVKDAPTFDLVAPRLLQALD--GAFFVAHNVDFDLSFINEELHALGYTGLS-GPVIDT 117 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +++ +P++ L+ L + + ++H H A D+ + +++++M Sbjct: 118 VELSKIAYPTADGFRLSQLSE--SLHMNHDQPHRADSDAEATALIFLEIM 165 >gi|319788791|ref|YP_004090106.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] gi|315450658|gb|ADU24220.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] Length = 177 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 19/178 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG---RKNSPEALKLHG 64 R IVFD+ET + N+R+ IG + + + T F ++ P R N+ +L G Sbjct: 3 RYIVFDVETP--NRYNNRMSAIGIAVIENGAVTEEYFS-YVDPQTYFDRFNT----QLTG 55 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI--AHNAKFDVGFINAELQRINKDPLDPSR 122 I + P+F E W+ + + AHNA FD+G + L+ + + + Sbjct: 56 INKYTVSGAPTFP----ELWERIEPIMSSGVLAAHNAVFDLGVLKKCLKAYGIEWKNTVK 111 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 T+ + RR P + LN LC+ YGI + H H A DS +D+ ++ G+Q Sbjct: 112 YCCTVQMGRRVLPGISHKLNVLCEHYGIALDH---HKADSDSRACADILLRYFESGAQ 166 >gi|229149839|ref|ZP_04278067.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1550] gi|228633520|gb|EEK90121.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1550] Length = 934 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHNQPHRADSDALATAELFLQFL 167 >gi|15677307|ref|NP_274462.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|7226692|gb|AAF41810.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|316984587|gb|EFV63552.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Neisseria meningitidis H44/76] gi|325199934|gb|ADY95389.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76] Length = 470 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|325134568|gb|EGC57212.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399] gi|325144729|gb|EGC67024.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240013] gi|325205795|gb|ADZ01248.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M04-240196] Length = 470 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|319651314|ref|ZP_08005444.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp. 2_A_57_CT2] gi|317397094|gb|EFV77802.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp. 2_A_57_CT2] Length = 933 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 9/164 (5%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + +V D+ETTG K D+II+ AV +++ K + + P + P +L G++ Sbjct: 4 KYVVVDLETTGNAPKKGDKIIQFAAV-VIENGKITEEYSSLVNPE-QSIPPFIEELTGLS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE +++ P FS I + + A ++AHN FD+ F+ EL + ++DT Sbjct: 62 DEMVENAPLFSEIAPKVLTLL--EGAYFVAHNVLFDLSFLQEELIEAGYNGF-YGPVLDT 118 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + +AR P++ + L+ L R G ++H H A D+++ ++ Sbjct: 119 VEMARILFPTADSFKLSDLALREG--LNHERPHQADSDAYVTAE 160 >gi|295133689|ref|YP_003584365.1| exonuclease family protein [Zunongwangia profunda SM-A87] gi|294981704|gb|ADF52169.1| exonuclease family protein [Zunongwangia profunda SM-A87] Length = 218 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 23/178 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCPNGRKNSPEALKLHG 64 +V D ETTG D + DRI+ IG V++ K N+ +F+++L K +P+ +++HG Sbjct: 38 VVLDTETTGFDQEKDRILSIGCVKI----KNNKLLVADSFEIYL--KQEKFNPDTVEIHG 91 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + S F + +++ +AH+A FD+ INA L+R N P +R++ Sbjct: 92 LIKHERFETISEEKAIQLFLKYI--KDSVLVAHHAGFDINMINAALKR-NHLPKLKNRVL 148 Query: 125 DTLSIARRKHPSSR-------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT + R+ S L+ + Y I + R H A+ D+ + + ++K++ Sbjct: 149 DTGILYRKTRIISNFIDQHKTYSLDEVALAYNIDLKDR--HTAIGDAFITAIAFLKIL 204 >gi|56963828|ref|YP_175559.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus clausii KSM-K16] gi|56910071|dbj|BAD64598.1| ATP-dependent DNA helicase DinG [Bacillus clausii KSM-K16] Length = 942 Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + ++I+IGAV++ + T+R F F+ P G P +L GITD+ Sbjct: 6 VVIDLETTGNSPDQGAKMIQIGAVKVEGCTITDR-FSTFVDP-GCSIPPFITELTGITDK 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F I ++ F + + +AHN FD GF+ A+L+ L DT+ Sbjct: 64 DVEGAPVFREIATDLLAFM--EGSSLVAHNVPFDKGFLEAQLE-TEGLRLPKCCQFDTVE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R P+ + L+ L + + H H A D+ + ++++IK++ Sbjct: 121 LSRVLLPTQESYKLSELSS--SLDMDHDRPHRADSDAEITAELFIKLL 166 >gi|332993984|gb|AEF04039.1| ribonuclease T [Alteromonas sp. SN2] Length = 218 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCP-NGRKNSPEALKL 62 +V D+ET G ++ D ++EI AV + L Y ++TF + P G P AL+ Sbjct: 18 VVIDVETAGFNAGTDALLEIAAVTVKMEEDGLIYP--DQTFHYHVDPFEGANLEPAALEF 75 Query: 63 HGITDEF-----LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN 114 +GI +++ + S+ + + + +AHNA FD F+NA + R N Sbjct: 76 NGIDPHCALRGAIEESEAMKSLCKGIRKAQKDADCQRSVIVAHNATFDQSFVNAAIARCN 135 Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + P P DT S+A + L C+ GI + H AL D+ ++++ Sbjct: 136 IKRTPFHPFVSFDTTSLAGLT--LGQTVLVKACRAAGIEFDQKEAHSALYDAQKTTELFC 193 Query: 173 KMM 175 M+ Sbjct: 194 FMV 196 >gi|325140605|gb|EGC63125.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385] Length = 469 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 27 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 82 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R P+ + Sbjct: 83 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 138 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 139 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 181 >gi|119900237|ref|YP_935450.1| putative DNA-directed polymerase III [Azoarcus sp. BH72] gi|119672650|emb|CAL96564.1| putative DNA-directed polymerase III [Azoarcus sp. BH72] Length = 474 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 83/161 (51%), Gaps = 9/161 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R ++ D+ETTG DRI EI A+ ++ + + ++ + P G P + GI D Sbjct: 6 RYVLVDLETTGAHPLRDRITEI-AILRIERGQLVQRWESLINP-GVPIPPTIQGVTGIDD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P F+++ + + ++AHNA+FD GF+ + ++ P ++ T+ Sbjct: 64 TMVAGAPDFAAVADTVAALLD--DCVFVAHNARFDYGFLKTAYAALGREFDAP--VLCTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 ++R +P R+ L+++ +R+G+ ++H A+ D+ +L Sbjct: 120 KLSRALYPDHHRHGLDAIIERHGLACG--ARHRAMGDTEVL 158 >gi|325136504|gb|EGC59108.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579] Length = 469 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 27 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 82 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R P+ + Sbjct: 83 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 138 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 139 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 181 >gi|218768453|ref|YP_002342965.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491] gi|121052461|emb|CAM08798.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491] Length = 470 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|254670274|emb|CBA05558.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria meningitidis alpha153] Length = 461 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R P+ + Sbjct: 75 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 131 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173 >gi|240143784|ref|ZP_04742385.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] gi|257204219|gb|EEV02504.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 5/170 (2%) Query: 5 NKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + +KIVF D ETTGLD + D+IIE+ A + + + P G K + ++L Sbjct: 2 QQFKKIVFFDTETTGLDPEKDQIIELAAALVTENGIELKIDAFCKLPEGEKIPEKIVELT 61 Query: 64 GITDEFLKDKP-SFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 ITD+ L DK + F + + + +AHN +FD+ FI +R P P Sbjct: 62 HITDDMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFILEMFKRCGMVPKAPK 121 Query: 122 -RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 R +D+L++ + + N++ + YG+ ++ H A+ D L +V Sbjct: 122 LRALDSLTVYKDRAAYPHKLANAI-EHYGLADKVQNSHRAIDDVLALYEV 170 >gi|228996755|ref|ZP_04156392.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides Rock3-17] gi|228763074|gb|EEM11984.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides Rock3-17] Length = 930 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ DRI +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDRITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A +IAHN FD F+ EL++ ++ + ID Sbjct: 62 DENLVKQAPLFCDVAPMVAELL--QGAYFIAHNVHFDWNFLKEELKQAGYGEVNCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ + ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALVTAELFLQFL 167 >gi|121607002|ref|YP_984331.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2] gi|120595971|gb|ABM39410.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2] Length = 203 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 11/159 (6%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D ETTG+ DR E+ A+ LL+ + FQ + N P + +L GIT+ Sbjct: 6 VIDFETTGISPGCGDRATEV-AIVLLEGGRVVDRFQSLM--NAGVRIPSFITQLTGITNA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + + ++ F + A +AHNA FD F AEL R P I TL Sbjct: 63 MVAGAPDAAQVMTQASRFVGD--APLVAHNAAFDRKFWQAELDRAGLA--APQPFICTLL 118 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHL 166 ++RR +P + N L SL +G+ + ++ H AL D+ + Sbjct: 119 LSRRLYPQAPNHKLGSLVDFHGLPRTGQA-HRALADAEM 156 >gi|261392288|emb|CAX49811.1| putative DnaQ-like exonuclease [Neisseria meningitidis 8013] Length = 470 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec] gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec] Length = 389 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 15/169 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL DR++ + V + L P P + +HG+T + L Sbjct: 79 VVDVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTLLDPG---CDPGPVHIHGLTRQRL 135 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 P+F+++ E + +AHNA FD + E RI P++ R+ TL++ Sbjct: 136 AGSPTFAAVADEVAGLLAGRV--LVAHNAAFDWRMLAGEAMRIGTTIPVE-WRLC-TLTL 191 Query: 130 ARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A R + PS R L SL +G+ R H A D+ +L+ + +++ Sbjct: 192 ASRLGLELPSLR--LASLAAYWGVV--QRRAHDAQDDAEVLAALLPRIL 236 >gi|325130506|gb|EGC53261.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis OX99.30304] Length = 470 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|308389143|gb|ADO31463.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis alpha710] Length = 461 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R P+ + Sbjct: 75 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 131 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173 >gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] Length = 328 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 10/162 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRII L + + + P + P + +HG+T E L Sbjct: 25 VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNP---ERDPGPVWIHGLTSEAL 80 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F+ I EF ++ +AHNA FD I E R ++ R+ T++++ Sbjct: 81 EGAPLFTDIAEEFAARLADRVL--VAHNAVFDWQMIAREYARARREAPVRQRLC-TIALS 137 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + P + L SL +G+ R H AL D+ +L++ + Sbjct: 138 KELGLPLPNHKLESLAAHFGVV--QRRAHHALDDARVLAEAF 177 >gi|319410698|emb|CBY91078.1| putative DnaQ-like exonuclease [Neisseria meningitidis WUE 2594] Length = 461 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M V D+E+TG + DR+ E+ V+ + R + N +K P+ + L GI Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKF----EQGRVVRHEWLVNPQKPIPQFVAGLTGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R P+ + Sbjct: 75 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 131 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173 >gi|315924662|ref|ZP_07920879.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263] gi|315621561|gb|EFV01525.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263] Length = 178 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 25/182 (13%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL------K 61 R +VFD+ET + +N R+ IG + D T+ + + +PE + Sbjct: 3 RFVVFDVETP--NRENRRMSAIGITVIEDGKITDEFYSLV--------NPETYFDYFNTR 52 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLD 119 L GI ++ + + P+F ++ + + +AHNA FD+G + L+ RI P Sbjct: 53 LTGICEDAVWNAPTFPELWKTIAPMLS--SGLLVAHNAVFDMGVLKRCLRDYRIEWKP-- 108 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R + T+ + RR P + LN LC YGI ++H H A DS + + ++ + G+ Sbjct: 109 HVRYLCTVQMGRRIIPGMSHKLNVLCDYYGINLAH---HQAASDSRACAQILLRYLEVGA 165 Query: 180 QI 181 + Sbjct: 166 DV 167 >gi|124005083|ref|ZP_01689925.1| exonuclease [Microscilla marina ATCC 23134] gi|123989335|gb|EAY28896.1| exonuclease [Microscilla marina ATCC 23134] Length = 245 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG D+ NDRI++I ++L D +K + + + P PE K+HG++DE Sbjct: 8 VFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEK--ERLINPT-IPIPPEVTKVHGVSDE 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTL 127 +KD P+F + ++F + H FD+ + E R +P + ID + Sbjct: 65 MVKDAPTFHQVAKSLFEFIRGCDLAGYNH-LNFDMPLLIEEFARAGVVFPEPDVQYIDVM 123 Query: 128 SIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLLSDVY 171 + HP + + L C + + H A+ D+ +++ Sbjct: 124 KVYYHFHPRTLSAAYQLYCHK-----ELENAHNAMADTQATLEIF 163 >gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces hygroscopicus ATCC 53653] gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces himastatinicus ATCC 53653] Length = 335 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 10/162 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRI+ +L + + P + P + +HG+T E L Sbjct: 28 VVDVETTGL-ARDDRIVSAAVYQLDARGAVQDRWYTLVNP---QRDPGPVWIHGLTRETL 83 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P F I + F + + + +AHNA FD I E R + R+ T++++ Sbjct: 84 SDAPLFPDIATAFAERLDGRV--LVAHNAAFDWSMIAREFARSKTEAPVRQRLC-TIALS 140 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + P + + L +L YG+ + R+ H AL D+ +L++ + Sbjct: 141 KELGLPLANHKLETLAAHYGV-VQERAHH-ALDDARVLAETF 180 >gi|302668948|ref|YP_003832773.1| exonuclease family protein [Butyrivibrio proteoclasticus B316] gi|302397288|gb|ADL36191.1| exonuclease family protein [Butyrivibrio proteoclasticus B316] Length = 302 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 21/221 (9%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLD---YSKTNRTFQVFLCPNGRKNSP 57 ++R NK+ I++D ETTG K I++I A++L Y + Q P + Sbjct: 25 VLRNNKVPIIIYDTETTGT-GKKAYIVQISALKLSPGNPYYIVDTLDQYIRPPIPMPAAA 83 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA--HNAKFDVGFINAELQRINK 115 A+ + ITDEFL+DKPS S +FF + N IA ++ FD +N QR Sbjct: 84 SAV--NHITDEFLEDKPSEEIALSWIQNFFGDPNDSVIAGYNHISFDNKMMNNMYQRAAG 141 Query: 116 DPLDPSRIIDTLSIA-----RRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSD 169 DP +D L +A R + R L S+ + YGI T + H A ++D Sbjct: 142 LTFDPKWNVDALVMARCLVDRNEITDGRFTLASIAETYGIKTDEDQQLHNA------MTD 195 Query: 170 VYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 + + M V + IN + ++ + + T P I +L K Sbjct: 196 IQVTMKVMWALINDYVDSGLEQVYLSQ-STKPIIQILGAPK 235 >gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 334 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 10/162 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRI+ L + + + P + P + +HG+T + L Sbjct: 22 VVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTLVNP---ERDPGPVWIHGLTSDVL 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P F I EF + + +AHNA FD I E R + R+ T+++A Sbjct: 78 AGAPLFQDIADEFSQRLDGRVL--VAHNAMFDWSMIAREYARARRTAPTRQRLC-TIALA 134 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + P + L SL +G+ R H AL D+ +L++ + Sbjct: 135 KELRLPLPNHKLESLAAHFGVV--QRQAHHALDDARVLAEAF 174 >gi|107028837|ref|YP_625932.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116690004|ref|YP_835627.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|105898001|gb|ABF80959.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116648093|gb|ABK08734.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] Length = 212 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL DR EI + L + +R FQ + GR+ + + L GIT++ Sbjct: 13 VLDFETTGLSPNLGDRATEIAVILLRNGQVVDR-FQSLMN-AGRRIPSDVVALTGITNDM 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P S + E F + +AHNA FD F +EL + T+ + Sbjct: 71 IATAPPASEVMKEAAAFVGKHAV--VAHNAGFDKRFWQSELGMLGMSA--DHAFACTMLV 126 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR +P +R+ L+SL + + + R+ H A++D+ + ++ ++ Sbjct: 127 ARRIYPDARSHRLSSLAEMLRLPQTGRA-HRAMVDAEMAGHLWCRL 171 >gi|300776313|ref|ZP_07086171.1| exonuclease [Chryseobacterium gleum ATCC 35910] gi|300501823|gb|EFK32963.1| exonuclease [Chryseobacterium gleum ATCC 35910] Length = 254 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 71/128 (55%), Gaps = 8/128 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 +FD+ETTG + DRI+EI +++ D S+ ++T++V N P E ++HGI DE Sbjct: 11 IFDLETTGTNIGKDRIVEICILKVNPDASRESKTWRV----NPEMPIPKECSEIHGIYDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127 +KD P+F I ++ + + + N +FDV + EL R+ D L+ R++D Sbjct: 67 DVKDAPTFRDIAAKIMEMISGSDLGGFNSN-RFDVPLLAEELLRVGMDFDLNKFRLVDAQ 125 Query: 128 SIARRKHP 135 +I +K P Sbjct: 126 TIFHKKEP 133 >gi|311742833|ref|ZP_07716641.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM 15272] gi|311313513|gb|EFQ83422.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM 15272] Length = 569 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 80/168 (47%), Gaps = 19/168 (11%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K RI EIGAV L+ + FQ + P+ ++ P + L GITD+ Sbjct: 34 VVDLETTGGSPQKGSRITEIGAV-LVRGGEVLGEFQTLVNPD--ESIPAFITVLTGITDQ 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN---AELQRINKDPLDPSRIID 125 + P + F +F + + +AHNA FD GF+ AELQ P ++D Sbjct: 91 MVVQAPRIAEALPSFLEF--ARGSVLVAHNAPFDTGFLRHAAAELQ----IPWPRFEVLD 144 Query: 126 TLSIARRKHPSS--RN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 T +ARR + RN L +L G T + H AL D+ DV Sbjct: 145 TALLARRVLLAGEVRNCKLGTLAAHVGATTT--PNHRALSDARATVDV 190 >gi|205355328|ref|ZP_03222099.1| exonuclease possibly DNA polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8421] gi|205346562|gb|EDZ33194.1| exonuclease possibly DNA polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8421] Length = 233 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 + DIE+TG SK + I+EIGAV++ + + R FQ F+ K PE + +L GIT E Sbjct: 51 IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPENITELTGITYEM 105 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ PS + + S+F F +++ ++AHN +FD FI+ L L RI T+ Sbjct: 106 VENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 162 Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154 A+ S + L L + G+ +H Sbjct: 163 AQCCIESPKYKLEVLKEFLGVENTH 187 >gi|109897723|ref|YP_660978.1| ribonuclease T [Pseudoalteromonas atlantica T6c] gi|109700004|gb|ABG39924.1| RNAse T [Pseudoalteromonas atlantica T6c] Length = 211 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 20/196 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G +++ D ++E+ A+ +D + ++TF + P G AL+ +G Sbjct: 18 VIVDVETAGFNAQTDALLEVAAITTQMDADGFLTPDKTFHYHVVPFEGANLEKAALEFNG 77 Query: 65 I---------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 I DE K I E D + Q + +AHNA FD+GFINA ++R I Sbjct: 78 IDPWCALRGALDETEVMKDLCKQIRKEQKDA-DCQRSVMVAHNAAFDLGFINAAIERSKI 136 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L C+ I+ H AL D+ +++Y Sbjct: 137 KRTPFHPFVSFDTTTLSGLA--LGQTVLVKACQAANISFDQSEAHSALYDTQKTAELYC- 193 Query: 174 MMVGGSQINFGFKTNE 189 +V Q G+ T E Sbjct: 194 YIVNKWQSACGWPTPE 209 >gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1] gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1] Length = 1457 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 7/171 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFD+ETTGL K + +IE GAV + + FL K L GIT+ Sbjct: 403 RYVVFDLETTGLSPKFNELIEFGAVVWQNGQILEK--HEFLIKPKEKIPSYISDLTGITN 460 Query: 68 EFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++++ S + F QN+ +AHNA+FD G + + + L+ +IDT Sbjct: 461 QMIENEAISVEEAAIKIKQIF--QNSILVAHNARFDYGCLVEFFKELELYELEQP-VIDT 517 Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 L ++R P+ R++L L K I H D+ +L+ V+ + ++ Sbjct: 518 LEVSRFLAPTQKRHNLKELAKNASIHYDETESHRGGYDAEVLAKVWDQFLI 568 >gi|325068629|ref|ZP_08127302.1| hypothetical protein AoriK_12441 [Actinomyces oris K20] Length = 204 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 10/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + EIGAV++ + F + P G + L GIT+ Sbjct: 23 VVVDLETTGGAPGARSLTEIGAVKV-RGGQVLAEFSTLVNP-GVAIPAQITLLTGITNAM 80 Query: 70 LKDKPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P + F D+ + + +AHNA+FDVG + ++ + +P R++DTL Sbjct: 81 VAGAPGVRTCVEAFLDWADLLADDVVLVAHNARFDVGHLRGAAAALDLEWPEP-RVLDTL 139 Query: 128 SIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++AR+ S + L +L G I R H AL D+ DV Sbjct: 140 ALARKAWTRSEVPNHKLGTLAAFVGSQI--RPTHRALDDARATVDVL 184 >gi|295398569|ref|ZP_06808601.1| possible DNA-directed DNA polymerase III epsilon subunit [Aerococcus viridans ATCC 11563] gi|294973170|gb|EFG48965.1| possible DNA-directed DNA polymerase III epsilon subunit [Aerococcus viridans ATCC 11563] Length = 957 Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 9/161 (5%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG N DRII+IG V + + F + PN ++ E KL GIT+E Sbjct: 10 VLDLETTGSTYDNGDRIIQIG-VAFVQNGQVVDQFATDIFPN-QEIPREITKLTGITNEQ 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K P F ++ W + N +AHN FD F++ Q + R +DT+ + Sbjct: 68 VKRAPKFEAVAEILWQKLS--NTVIVAHNIGFDYKFLDKSFQAHGYPAMTHDR-VDTVEM 124 Query: 130 ARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 R P++ + L C +GI + +H + A+ +H+L Sbjct: 125 VRTLFPTADSYKLGEFCLAHGIQLENAHTAIDDAVATAHIL 165 >gi|217970248|ref|YP_002355482.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|217507575|gb|ACK54586.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 203 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 11/161 (6%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D ETTGL ++ DR EI AV + D +R +Q + N P ++ L GI++ Sbjct: 6 VIDFETTGLSPAQGDRATEIAAVIVRDGRVVDR-YQSLM--NAGVRIPAHIESLTGISNA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+ + + E DF +AHNA FD F +AEL RI + + +L Sbjct: 63 MIRSAPTAAQVMREVADFIG--GIPMVAHNAAFDAKFWDAELARIERA--RKQDFVCSLL 118 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 ++RR P + + L +L + + ++ R H AL D+ + + Sbjct: 119 LSRRLFPLAPSHRLGALVEYARLPVAGRF-HRALADAEMAA 158 >gi|332652795|ref|ZP_08418540.1| exonuclease [Ruminococcaceae bacterium D16] gi|332517941|gb|EGJ47544.1| exonuclease [Ruminococcaceae bacterium D16] Length = 195 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 10/181 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I FD+ET +S NDRI IG V +++ + P R S + L GIT Sbjct: 4 RYIAFDVETP--NSANDRISAIG-VTVVERGAVVEQHDYLVNPETRFASFN-VALTGITP 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + DKP+F ++ E F+ + IAHNA FD+ + L+ T Sbjct: 60 EMVADKPAFPQLWQELEPIFD--SGLLIAHNAPFDMSVLAKCLRDYGIRWRPSVSYACTC 117 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++RR P N LN+LC G+ + H H A DS ++ + + G+ + + Sbjct: 118 QMSRRLLPQLPNHKLNTLCDFLGLELDH---HRAGSDSLACGEILLHHLHSGADLTPFIR 174 Query: 187 T 187 T Sbjct: 175 T 175 >gi|284040095|ref|YP_003390025.1| DNA polymerase III subunit epsilon [Spirosoma linguale DSM 74] gi|283819388|gb|ADB41226.1| DNA polymerase III, epsilon subunit [Spirosoma linguale DSM 74] Length = 180 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 8/165 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTG R+ EI A+ D + +F L P G P L GI+DE + Sbjct: 4 IVDVETTGGVKGPTRLTEI-AIFRHDGQQVVDSFHSLLNP-GCPIPPFIRHLTGISDEMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P+F+ + ++ + Q+A ++AHN FD FI EL + D L R + T+ + Sbjct: 62 QDAPTFADVANDVLNI--TQDAIFVAHNVGFDFSFIQKELNWLGHDFL--RRTLCTVRTS 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK-HGALLDSHLLSDVYIK 173 R+ P + L LC+ I ++ R + G + LL ++ +K Sbjct: 118 RKLLPGYPSYSLGKLCRSLEIPLNGRHRAQGDAAATVLLFEMLLK 162 >gi|229160592|ref|ZP_04288587.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus R309803] gi|228623002|gb|EEK79833.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus R309803] Length = 933 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|148925831|ref|ZP_01809518.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8486] gi|145844817|gb|EDK21921.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8486] Length = 256 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 + DIE+TG SK + I+EIGAV++ + + R FQ F+ K PE + +L GIT E Sbjct: 74 IVDIESTGSVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPENITELTGITYEM 128 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ PS + + S+F F +++ ++AHN +FD FI+ L L RI T+ Sbjct: 129 VENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185 Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154 A+ S + L L + G+ +H Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENTH 210 >gi|238018443|ref|ZP_04598869.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748] gi|237864914|gb|EEP66204.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748] Length = 862 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 6/164 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+E+TG D+ DRII+I A+ + + + TF+ F+ P E ++HG +D + Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLETFERFINPGVPVGQSE--EVHGFSDAY 552 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LK+ +I + + F+ +NA + HN +DV EL R N + I DTL I Sbjct: 553 LKEHGEEPAIVLQAFKEFS-KNAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLDI 611 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 RR +P+ N L L + I+H H A+ D S + I Sbjct: 612 YRRFYPNLPNHKLGFLASEF--PINHEPTHNAMDDILATSQLLI 653 >gi|229126955|ref|ZP_04255966.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-Cer4] gi|228656555|gb|EEL12382.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-Cer4] Length = 934 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 1467 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 16/173 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68 + FDIETTGL + IIE G++ + K R Q F+ C K P L GIT+ Sbjct: 433 VSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQEPIK--PFTENLTGITNA 490 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ S + +N+ N + +AHNA+FD F+ + R K +IDTL Sbjct: 491 MIEK--SGLELKEALQKIYNDLNGKIALAHNARFDFNFLKEKF-RQAKIEFPNVTVIDTL 547 Query: 128 SIARRKHPSS-RNDLNSLCKRYGI----TISHRSKHGALLDSHLLSDVYIKMM 175 ++R P + ++ L + R G+ T++HR + D+ +L++V++ +M Sbjct: 548 IVSRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDY----DAKVLAEVWVALM 596 >gi|228938753|ref|ZP_04101356.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971635|ref|ZP_04132257.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978244|ref|ZP_04138621.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis Bt407] gi|228781261|gb|EEM29462.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis Bt407] gi|228788048|gb|EEM36005.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820928|gb|EEM66950.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939259|gb|AEA15155.1| ATP-dependent helicase DinG [Bacillus thuringiensis serovar chinensis CT-43] Length = 934 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|317126517|ref|YP_004100629.1| exonuclease RNase T and DNA polymerase III [Intrasporangium calvum DSM 43043] gi|315590605|gb|ADU49902.1| Exonuclease RNase T and DNA polymerase III [Intrasporangium calvum DSM 43043] Length = 228 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 21/190 (11%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +R + D+ETTGLD + D I+ +G V ++D S + LC + ++ + Sbjct: 42 LRLLAVDLETTGLDPRTDHILTVGFVPVDGLVIDLSGATQ----LLC-RAEGDVGQSAVV 96 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITD+ L + + + +AH+A + F+ A +R + PL P Sbjct: 97 HGITDDALAGGLPLADVVDRVAAALRGRV--LLAHHAVIEREFLAAACERTHGVPL-PME 153 Query: 123 IIDTLSI-ARRKHPSSRNDLNSLCKRYGITISHR-----SKHGALLDSHLLSDVYIKMMV 176 +DT+ + AR S DL R G +H + H AL D+ +++Y+ + Sbjct: 154 AVDTMQLQARVLGSQSGADLPPGALRLGTARAHLGLPRYAAHQALTDALACAELYLAQVA 213 Query: 177 ---GGSQINF 183 GG ++ Sbjct: 214 RLSGGQPMSL 223 >gi|229144240|ref|ZP_04272654.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST24] gi|228639248|gb|EEK95664.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST24] Length = 934 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|152993730|ref|YP_001359451.1| DNA polymerase III subunit epsilon [Sulfurovum sp. NBC37-1] gi|151425591|dbj|BAF73094.1| DNA polymerase III, epsilon subunit [Sulfurovum sp. NBC37-1] Length = 272 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 10/166 (6%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLH 63 + R V DIET G ++IEIGAV + +R C PE + K+ Sbjct: 70 QEQRYCVIDIETNGSKPGTSQVIEIGAVMVEKGEIVDRLETFVECAF----LPEYITKIT 125 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI LKD P+ + ++ F +A ++AHNA FD F+ A +R + ++ Sbjct: 126 GIEPIDLKDAPTRRAALTQLRQFMG--DAVFVAHNANFDYSFLTASFERFGLGGIGNPKL 183 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLL 167 T+ +A+R S R L L GI + HR+ AL ++ Sbjct: 184 C-TIDLAKRTFESERYGLAYLIDFLGIETATHHRAYSDALCAEKVM 228 >gi|310828723|ref|YP_003961080.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612] gi|308740457|gb|ADO38117.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612] Length = 461 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 8/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTGLD N+ IIEIGA+++ D +F+ F+ P S + + GIT+ Sbjct: 147 VMVDVETTGLDPSNNEIIEIGALKITD-GNVIDSFKTFVKPINSIPS-KITSITGITNNM 204 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPSRIIDTL 127 + D PS ++ EF F ++ + +N FD+ F++ + N D L ID L Sbjct: 205 VADAPSIKTVLMEFKSFLSDN--YIVGYNVLFDIKFLHDSYYKNFGNCDWLSHDY-IDVL 261 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R+ S+ N + Y + I + H AL D + + Y Sbjct: 262 RFCRKYFKSAPNHKLTTMIDY-LNIDVKEHHRALADCYATLECY 304 >gi|228952021|ref|ZP_04114116.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957917|ref|ZP_04119657.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801833|gb|EEM48710.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807553|gb|EEM54077.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 934 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|224417820|ref|ZP_03655826.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|253827160|ref|ZP_04870045.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|313141361|ref|ZP_07803554.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|253510566|gb|EES89225.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|313130392|gb|EFR48009.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] Length = 247 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 12/172 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEAL-KLHGI 65 R + DIET G + + IEIGA+ + K +F F+ C + PE + KL GI Sbjct: 70 RFCIVDIETNGHNPFVHQPIEIGAI-VYQGGKICESFHSFVFC----EEIPEYITKLTGI 124 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T L+ P + F F + + ++AHN FD F++ L L R+ Sbjct: 125 TSPMLEKAPKIHQVLESFKLFLS--DCVFVAHNVNFDYQFLSNALYHYGFGYLYNPRLC- 181 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 T+ +A++ S R L L + G I H H AL DS + S+V+ K ++G Sbjct: 182 TIKLAQKTFTSPRYSLEFLNEFLG--IRHSPLHRALEDSKVASEVFKKSLMG 231 >gi|206970727|ref|ZP_03231679.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1134] gi|229078824|ref|ZP_04211377.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock4-2] gi|229178049|ref|ZP_04305421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 172560W] gi|206734363|gb|EDZ51533.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1134] gi|228605537|gb|EEK62986.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 172560W] gi|228704506|gb|EEL56939.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock4-2] Length = 934 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|218230901|ref|YP_002366323.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus B4264] gi|228907275|ref|ZP_04071134.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 200] gi|229069194|ref|ZP_04202485.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus F65185] gi|218158858|gb|ACK58850.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus B4264] gi|228713946|gb|EEL65830.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus F65185] gi|228852329|gb|EEM97124.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 200] Length = 934 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|330989528|gb|EGH87631.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M301315] Length = 225 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + +D + T+ + P G P AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANVEPAALEFTG 92 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ ++ + + IF + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ GI R H A D+ ++++ + Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210 Query: 175 M 175 + Sbjct: 211 V 211 >gi|320531410|ref|ZP_08032377.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136382|gb|EFW28363.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 299 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + EIGAV++ + F + P G + L GIT+ Sbjct: 23 VVVDLETTGGAPGARSLTEIGAVKVRG-GQVLADFSTLVNP-GVAIPAQITMLTGITNAM 80 Query: 70 LKDKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P S+ F W + +AHNA+FDVG + + + +P R++DTL Sbjct: 81 VAGAPGVSTCVEAFLSWADLLADDVVLVAHNARFDVGHLRGAAAALGLEWPEP-RVLDTL 139 Query: 128 SIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++AR+ S + L +L G R H AL D+ DV Sbjct: 140 ALARKAWTRSEVPNHKLGTLAAFVG--SRTRPSHRALDDARATVDV 183 >gi|57237506|ref|YP_178520.1| DNA polymerase III subunit epsilon [Campylobacter jejuni RM1221] gi|57166310|gb|AAW35089.1| exonuclease, DNA polymerase III, epsilon subunit family [Campylobacter jejuni RM1221] Length = 233 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 + DIE+TG SK + I+EIGAV++ + + R FQ F+ K PE + +L GIT E Sbjct: 51 IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPENITELTGITYEM 105 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ PS + + S+F F +++ ++AHN +FD FI+ L L RI T+ Sbjct: 106 VENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 162 Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154 A+ S + L L + G+ +H Sbjct: 163 AQCCIESPKYKLEVLKEFLGVENTH 187 >gi|296502210|ref|YP_003663910.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171] gi|296323262|gb|ADH06190.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171] Length = 934 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|229189723|ref|ZP_04316737.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 10876] gi|228593772|gb|EEK51577.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 10876] Length = 934 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|15835150|ref|NP_296909.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270285322|ref|ZP_06194716.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270289339|ref|ZP_06195641.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss] gi|301336719|ref|ZP_07224921.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14] gi|8163241|gb|AAF73567.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum Nigg] Length = 232 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 76/169 (44%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRI+EI A T +FQ + P + EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIVEIAAYN----GTTGESFQTLVNPEIPIPA-EATKIHGITTSE 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P F + +F DF N +N FD + E +R + P R ID+L Sbjct: 60 VANAPKFPEAYQQFSDFCGTDNILVAHNNNAFDYPLLLRECRR-HGLPEPQLRTIDSLKW 118 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 A++ ++ L L + YG + H AL D L V+ ++VG Sbjct: 119 AKKYRTDLPQHSLQYLRQVYG--FEENNAHRALDDVITLHRVF-SVLVG 164 >gi|229043387|ref|ZP_04191104.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH676] gi|228725968|gb|EEL77208.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH676] Length = 934 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVEMAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|218896571|ref|YP_002444982.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus G9842] gi|218545327|gb|ACK97721.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus G9842] Length = 934 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|295703510|ref|YP_003596585.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium DSM 319] gi|294801169|gb|ADF38235.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus megaterium DSM 319] Length = 933 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 7/164 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTG K D++I+ AV + D K F FL P G P +L I Sbjct: 4 RFVVVDLETTGHSPKQGDKMIQFAAVIVED-GKIVERFSSFLNP-GMDIPPFITQLTNIQ 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ +K P F I + + + +A ++AHN FD+ F+ EL + ++ L S +DT Sbjct: 62 NDMVKGAPLFEEISPKIIELLD--DAYFVAHNVAFDLTFLQEELYQCGRETLYNST-VDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + +AR P+ S Y + I H + H A D+ + + + Sbjct: 119 VELARILLPTVDGYKLSQLAEY-LHIEHENPHQADSDAEVTARI 161 >gi|258422513|ref|ZP_05685421.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9635] gi|257847270|gb|EEV71276.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9635] Length = 897 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I ++ Sbjct: 8 VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEK 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|228920352|ref|ZP_04083698.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839274|gb|EEM84569.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 934 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|228990657|ref|ZP_04150622.1| DnaQ family exonuclease/DinG family helicase [Bacillus pseudomycoides DSM 12442] gi|228769183|gb|EEM17781.1| DnaQ family exonuclease/DinG family helicase [Bacillus pseudomycoides DSM 12442] Length = 930 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ DRI +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDRITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ ++ + ID Sbjct: 62 DENLVKQAPLFCDVAPMVAELL--QGAYFVAHNVHFDWNFLKEELKQAGYGEVNCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ + ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALVTAELFLQFL 167 >gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64] gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64] Length = 1461 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 16/173 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68 + FDIETTGL + IIE G++ + K R Q F+ C K P L GIT+ Sbjct: 427 VSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQEPIK--PFTENLTGITNA 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ S + +N+ N + +AHNA+FD F+ + R K +IDTL Sbjct: 485 MIEK--SGLELKEALQKIYNDLNGKIALAHNARFDFNFLKEKF-RQAKIEFPNVTVIDTL 541 Query: 128 SIARRKHPSS-RNDLNSLCKRYGI----TISHRSKHGALLDSHLLSDVYIKMM 175 ++R P + ++ L + R G+ T++HR + D+ +L++V++ +M Sbjct: 542 IVSRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDY----DAKVLAEVWVALM 590 >gi|228900222|ref|ZP_04064453.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 4222] gi|228859391|gb|EEN03820.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 4222] Length = 934 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|75760399|ref|ZP_00740443.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492110|gb|EAO55282.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 934 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|325571052|ref|ZP_08146624.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC 12755] gi|325156137|gb|EGC68323.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC 12755] Length = 918 Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG DS DRII+ G V + D NR F + P+ R+ S + +L IT++ + Sbjct: 7 VVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTHITNQQV 64 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 P F + ++ + N ++AHN FD F++ E R PL P IDT+ + Sbjct: 65 SKAPYFEDVADTIYNLLS--NTIFVAHNIYFDYHFLSNEFVRCGLPPLSLPG--IDTVEL 120 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 A+ P+ S L L G H + H A D+ + + +++ Sbjct: 121 AQVFLPTESSFRLGDLADSIG--FRHDNPHQADSDAEVTAALFL 162 >gi|315057872|gb|ADT72201.1| Exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni S3] Length = 256 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 + DIE+TG SK + I+EIGAV++ + + R FQ F+ K PE + +L GIT E Sbjct: 74 IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPENITELTGITYEM 128 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ PS + + S+F F +++ ++AHN +FD FI+ L L RI T+ Sbjct: 129 VENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185 Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154 A+ S + L L + G+ +H Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENTH 210 >gi|218291538|ref|ZP_03495419.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius LAA1] gi|218238658|gb|EED05882.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius LAA1] Length = 240 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 15/237 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ + R +V D ETTGL + R++E+ VE+ + + + P G PEA Sbjct: 1 MKLSDARFVVVDTETTGLPPEG-RVVELALVEVGLEREPQIVYSALVDP-GCPIPPEASA 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H ITD + KP S ++ + + +A +AHNA+FD G L + L Sbjct: 59 VHHITDRDVAGKPRMSQVWPKVLGYIG--DAVLVAHNAEFDRGM----LPETGRPWLCSK 112 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R++ L P + N + + + GI + H AL D+ + + V+ + + + Sbjct: 113 RLVQHL------WPDAPKHANQVLRYWLGIDVEVGQPHRALGDALVTAHVFQRELRAYLE 166 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + +E F E V + K + + LD + +Q L + W Sbjct: 167 AGYPDDVDELTAFAESPIEVQTMPFGKHKGMPLKEVPLDYLDWALRNLQDLSPDLRW 223 >gi|260769062|ref|ZP_05877996.1| ribonuclease T [Vibrio furnissii CIP 102972] gi|260617092|gb|EEX42277.1| ribonuclease T [Vibrio furnissii CIP 102972] gi|315180803|gb|ADT87717.1| ribonuclease T [Vibrio furnissii NCTC 11218] Length = 219 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI AV L +D + T + P G AL+ +G Sbjct: 20 VVIDVETAGFNPQTDALLEICAVTLAMDENGDLHPASTIHFHVEPFEGANLEKAALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFW-DFFNEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD GF+ A +R + Sbjct: 80 IYDPFSPLRGAVSEEHALKEIYKQVRKEQKAADCSRAIIVAHNAAFDHGFVMAASERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMAFDNREAHSALYDTQQTAELFCG 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|228964616|ref|ZP_04125724.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar sotto str. T04001] gi|228795047|gb|EEM42545.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar sotto str. T04001] Length = 365 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|157414745|ref|YP_001482001.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81116] gi|157385709|gb|ABV52024.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 81116] gi|307747384|gb|ADN90654.1| DNA polymerase III, epsilon subunit [Campylobacter jejuni subsp. jejuni M1] gi|315931109|gb|EFV10083.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 253 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 + DIE+TG SK + I+EIGAV++ + + R FQ F+ K PE + +L GIT E Sbjct: 74 IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPENITELTGITYEM 128 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ PS + + S+F F +++ ++AHN +FD FI+ L L RI T+ Sbjct: 129 VENAPSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185 Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154 A+ S + L L + G+ +H Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENTH 210 >gi|301058175|ref|ZP_07199227.1| exonuclease, DNA polymerase III, epsilon subunit family protein [delta proteobacterium NaphS2] gi|300447807|gb|EFK11520.1| exonuclease, DNA polymerase III, epsilon subunit family protein [delta proteobacterium NaphS2] Length = 233 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 7/124 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD E TGL + D II IGAV + + TF + P G+ +P L +H IT Sbjct: 43 VVFDTELTGLKQRRDEIIAIGAVRIKNARICFEDTFYALIKPQGKLYTPSTL-IHRITPG 101 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L+ + F DF A + H+ D+GF+N Q + PS +DTL Sbjct: 102 ELRGAEPIEEVLPRFIDFCG--GAFLVGHHVSLDLGFVNRACQNYLGGVIKSPS--LDTL 157 Query: 128 SIAR 131 +AR Sbjct: 158 RLAR 161 >gi|21224413|ref|NP_630192.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)] gi|13276811|emb|CAC33929.1| putative DNA polymerase [Streptomyces coelicolor A3(2)] Length = 244 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 25/159 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTG D + RI+ +E+ R + +L G + +A+ +HGI++E Sbjct: 9 IGFDLETTGTDPREARIVTGAVIEVRGSEPLGR--REWLADPGVEIPADAVAVHGISNER 66 Query: 70 L--KDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---- 117 + +P + +++ + W + +A+NA FD+ + AEL+R + P Sbjct: 67 AAREGRPADQVADAIATVLVDHW----KAGVPVVAYNAAFDLTLLAAELRR-HALPSLRE 121 Query: 118 ----LDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGI 150 LDP+ +ID +I R ++ + +L ++C+ YG+ Sbjct: 122 RLGGLDPAPVIDPYTIDRSVDRYRRGKRNLEAVCREYGV 160 >gi|320528160|ref|ZP_08029325.1| DNA polymerase III subunit epsilon domain protein [Solobacterium moorei F0204] gi|320131508|gb|EFW24073.1| DNA polymerase III subunit epsilon domain protein [Solobacterium moorei F0204] Length = 186 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 SP +++HGIT +K P+FS I+SE +F ++A +AHNA+FD+ + K Sbjct: 50 SPYNIRIHGITARDVKGAPTFSEIYSELTGYF--EDAVIVAHNARFDMSCLKQTCLNTGK 107 Query: 116 DPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + DT+ + +R + + LN +C+ GI + H H AL D++ ++ + + Sbjct: 108 -KIPVLEYFDTVELCKRVFSNLEHHRLNDVCEYIGIELDH---HNALSDANGCLEIVMAV 163 Query: 175 M 175 M Sbjct: 164 M 164 >gi|313672733|ref|YP_004050844.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM 19672] gi|312939489|gb|ADR18681.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM 19672] Length = 195 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 8/169 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67 IV D+ETTG+ K +I+EI A+++ K N + N P A ++H I++ Sbjct: 12 IVIDLETTGISPYKGAKIVEIAALKIEKGLKINPKNSFYSLVNPLIPIPYSAYRVHKISN 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +KD P+ + +F +F + I N FD FI + L IIDT+ Sbjct: 72 EIVKDYPTIEKVLPKFLEFLD--TPFIIGQNISFDYSFIKY-FSDLYNFRLKEFIIIDTI 128 Query: 128 SIARRKHPS-SRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIK 173 +IA++ P+ R +L++L +GI + + +H A D + + ++IK Sbjct: 129 NIAKKIAPNLKRYNLDNLITYFGIENILGNGKRHRADFDIYATALIFIK 177 >gi|326790794|ref|YP_004308615.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM 5427] gi|326541558|gb|ADZ83417.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM 5427] Length = 237 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 14/165 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +V DIETTG IIEIGAV ++ + + F + P + S + + GIT+ Sbjct: 3 KYVVVDIETTGAHPVQSEIIEIGAV-YIEEGQVKKIFNELVRPT-QIISDYIISITGITN 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRI-ID 125 E + D P + F DF ++ I HN FD + + + ++ +D Sbjct: 61 EMVADAPPIEEVMPRFIDFC--EDVPLIGHNIILFDYRMLKTKATALG---FTFEKMGVD 115 Query: 126 TLSIARR--KHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHL 166 TL I+R+ H SR L LC+ Y I++ +HR+ H A L Sbjct: 116 TLVISRKMLAHLPSRK-LGDLCEHYAISLENAHRAYHDAFATYEL 159 >gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] Length = 328 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 10/162 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRI+ +L + + P + P + +HG+T+E L Sbjct: 28 VVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTLVNP---QRDPGPVWIHGLTEEVL 83 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F I E + ++ +AHNA FD + E R +K + + T++++ Sbjct: 84 EGAPRFPEIAGELAERLADRVL--VAHNAAFDWSMLAREYAR-SKSAAPVRQRLCTIALS 140 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + P + L +L YG+ R H AL D+ +L++ + Sbjct: 141 KELGLPLPNHKLETLAAHYGVV--QRRAHHALDDARVLAETF 180 >gi|300904709|ref|ZP_07122542.1| exonuclease [Escherichia coli MS 84-1] gi|301304416|ref|ZP_07210528.1| exonuclease [Escherichia coli MS 124-1] gi|300403376|gb|EFJ86914.1| exonuclease [Escherichia coli MS 84-1] gi|300840267|gb|EFK68027.1| exonuclease [Escherichia coli MS 124-1] gi|315257344|gb|EFU37312.1| exonuclease [Escherichia coli MS 85-1] Length = 220 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N Q L R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSQ--LVRPDRPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|270290279|ref|ZP_06196504.1| DnaQ family exonuclease/DinG family helicase [Pediococcus acidilactici 7_4] gi|270281060|gb|EFA26893.1| DnaQ family exonuclease/DinG family helicase [Pediococcus acidilactici 7_4] Length = 927 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 9/178 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLH 63 K R V D+ETTG S + RII+IG ++ + T+Q + P + P+ + +L Sbjct: 3 KTRYAVVDLETTGTGSVEESRIIQIGCA-FIEGDQITETYQTKINP--QMTIPKRISRLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD+ ++ P F+ + + + ++AHN FD F+N EL R LD + Sbjct: 60 GITDQQVRQAPKFADVADKIYQKL--AGTVFVAHNVNFDFPFLNRELVRSGYPELD-LKA 116 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 IDT+++++ +R Y + I H H A D+ + +++K+ S++ Sbjct: 117 IDTVTLSQVLFSRTRGYRLRDLTNY-LHIEHDDPHSADSDAVATAHLFLKIKAALSEL 173 >gi|197121230|ref|YP_002133181.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K] gi|196171079|gb|ACG72052.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K] Length = 206 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 15/175 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEF 69 D+ET GLD + D I+ +G V + L + +F + P P +++ H + Sbjct: 22 LDLETGGLDPRRDAILAVGMVPVRLGSVRLGESFSTLIRPEATAAIDPGSIRAHQLVPHD 81 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + PS S+ ++ D + A + H A DV F+ QR + DP ++DT+++ Sbjct: 82 VASAPSLDSVLADV-DVRAREGA-LLVHQASLDVAFLKRAYQRCGRRWPDPP-VVDTVAL 138 Query: 130 ----ARRKH------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 A+R+ P+ +LN L R + +H AL D+ +++++ + Sbjct: 139 LIKAAKRQRFVDPDAPAIEPELNLLAARRRRGLPDYGQHDALTDAVATAELFLVL 193 >gi|297198375|ref|ZP_06915772.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] gi|197714433|gb|EDY58467.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] Length = 241 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 13/154 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ AV + D + T +L G A +HG+T+E L Sbjct: 11 AFDTETTGVDVETDRIVS-AAVVVQDAAGTRPRVSRWLVNPGVPVPAGATAVHGLTEEHL 69 Query: 71 KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLD------P 120 + + + + E + EQ A + NA FD+ ++ EL+R LD P Sbjct: 70 QRNGRWPAPVMFEIAETLAEQAAAGRPLVVMNAPFDLTVLDRELRRHRASSLDRWLDSSP 129 Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 ++D + + ++ R L LC+ YG+T+ Sbjct: 130 LLVLDPRVLDKHLDRYRKGRRTLTDLCEHYGVTL 163 >gi|110805789|ref|YP_689309.1| exodeoxyribonuclease X [Shigella flexneri 5 str. 8401] gi|110615337|gb|ABF04004.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 220 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSLLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRCVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|268601098|ref|ZP_06135265.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18] gi|268585229|gb|EEZ49905.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18] Length = 264 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ +L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPQFVAELTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I + + +AHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 140 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182 >gi|229012784|ref|ZP_04169953.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048] gi|228748465|gb|EEL98321.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048] Length = 318 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 86/167 (51%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P + P+ + L GIT+ Sbjct: 14 VVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNP--ELSIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P + +IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127 Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ KH + + L +L + GI + S H A D + VY K Sbjct: 128 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 170 >gi|86157195|ref|YP_463980.1| exonuclease [Anaeromyxobacter dehalogenans 2CP-C] gi|85773706|gb|ABC80543.1| Exonuclease [Anaeromyxobacter dehalogenans 2CP-C] Length = 207 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 16/176 (9%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS--PEALKLHGITDE 68 D+ET GLD + D I+ +G V + S + +F + P + P +++ H + Sbjct: 22 LDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSIRAHQLVPH 81 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + PS S+ ++ D + A + H A DV F+ +R + +P ++DT++ Sbjct: 82 DVATAPSLDSVLADV-DLRAREGA-LLVHQASLDVAFLKRAYRRCGRRWPEPP-VVDTVA 138 Query: 129 I----ARRKH------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + A+R+ PS DLN L R + +H AL D+ +++++ + Sbjct: 139 LLIKAAKRQRFVNPDAPSMEPDLNLLAARRQRGLPDYGQHDALTDAVATAELFLVL 194 >gi|313681496|ref|YP_004059234.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense DSM 16994] gi|313154356|gb|ADR33034.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 267 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 9/163 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+E+ G + +IIEIGAV+L + + + C + S + ++ GI E Sbjct: 67 IVDVESNGSKPAHHQIIEIGAVKLQNGKIIDTYESLVYCTD---ISDQIQEITGIKTEQT 123 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P+ S + EF F +A ++ H+AKFD F++A ++R+ L +R + T+ +A Sbjct: 124 LKAPAMSKVMREFRLFLG--DAIFVGHDAKFDYNFVSAMMERVGLSKL-LNRSLCTIDLA 180 Query: 131 RRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDV 170 R S R LN+ + Y HR+ A+ + LL V Sbjct: 181 ERTIESERYGLAYLNTALELYKEATHHRALSDAMTTTKLLKRV 223 >gi|304384907|ref|ZP_07367253.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] gi|304329101|gb|EFL96321.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] Length = 927 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 9/178 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLH 63 K R V D+ETTG S + RII+IG ++ + T+Q + P + P+ + +L Sbjct: 3 KTRYAVVDLETTGTGSVEESRIIQIGCA-FIEGDQITETYQTKINP--QMTIPKRISRLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD+ ++ P F+ + + + ++AHN FD F+N EL R LD + Sbjct: 60 GITDQQVRQAPKFADVADKIYQKL--AGTVFVAHNVNFDFPFLNRELVRSGYPELD-LKA 116 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 IDT+++++ +R Y + I H H A D+ + +++K+ S++ Sbjct: 117 IDTVTLSQVLFSRTRGYRLRDLTNY-LHIEHDDPHSADSDAVATAHLFLKIKAALSEL 173 >gi|261417986|ref|YP_003251668.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus sp. Y412MC61] gi|319767201|ref|YP_004132702.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y412MC52] gi|261374443|gb|ACX77186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y412MC61] gi|317112067|gb|ADU94559.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y412MC52] Length = 909 Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 15/173 (8%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KLH 63 R ++ D+ETTG K DRII++G + D R F F P P L +L Sbjct: 4 RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE----QPIPLFIQQLT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I ++ ++ P F+ E + A ++AHN FD+ F+ AEL+R P Sbjct: 59 NINEQMVEGAPLFADKAGEIAALMH--GAYFVAHNVDFDLPFLQAELERAGWPPF-AGPT 115 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDT+ +AR P++ + L L ++ G + H H A D+ + + ++I ++ Sbjct: 116 IDTVELARIVLPTAESYKLGDLARQLG--LRHDRPHQADSDAEVTAKLFIALL 166 >gi|237731882|ref|ZP_04562363.1| exodeoxyribonuclease X [Citrobacter sp. 30_2] gi|226907421|gb|EEH93339.1| exodeoxyribonuclease X [Citrobacter sp. 30_2] Length = 226 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 26/179 (14%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +++ M +I+ D ET GL I+EI +V+++D K + P+ R SP+A+ Sbjct: 1 MGQEHGMLRII-DTETCGLQGG---IVEIASVDVVD-GKIVNPMSHLVRPD-RPISPQAM 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLD 119 +H IT+ + DKP + +++ +EW +AHNA FD +R+ D Sbjct: 55 AIHRITEAMVADKPWIEDVIPQYY------GSEWYVAHNASFD--------RRVLPD--M 98 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 P I T+ ++RR P + +L K +++ + H AL D ++ + + I +M Sbjct: 99 PGEWICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPAGLHHHRALYDCYITAALLIDIM 157 >gi|160874893|ref|YP_001554209.1| ribonuclease T [Shewanella baltica OS195] gi|160860415|gb|ABX48949.1| ribonuclease T [Shewanella baltica OS195] gi|315267130|gb|ADT93983.1| ribonuclease T [Shewanella baltica OS678] Length = 223 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S+ D ++EI AV LL ++T + P G PEAL + Sbjct: 20 VVIDVETAGFNSQTDALLEI-AVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFN 78 Query: 64 GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113 GI T+ + +K +F IF + +AHNA FD GF++ ++R + Sbjct: 79 GIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++A L C GI ++ H AL D+ ++++ Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCH 196 Query: 174 MM 175 ++ Sbjct: 197 IV 198 >gi|297529654|ref|YP_003670929.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. C56-T3] gi|297252906|gb|ADI26352.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. C56-T3] Length = 909 Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 15/173 (8%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL---KLH 63 R ++ D+ETTG K DRII++G + D R F F P P L +L Sbjct: 4 RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE----QPIPLFIQQLT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I ++ ++ P F+ E + A ++AHN FD+ F+ AEL+R P Sbjct: 59 NINEQMVEGAPLFADKAGEIAALMH--GAYFVAHNVDFDLPFLQAELERAGWPPF-AGPT 115 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDT+ +AR P++ + L L ++ G + H H A D+ + + ++I ++ Sbjct: 116 IDTVELARIVLPTAESYKLGDLARQLG--LHHDRPHQADSDAEVTAKLFIALL 166 >gi|295395919|ref|ZP_06806104.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Brevibacterium mcbrellneri ATCC 49030] gi|294971192|gb|EFG47082.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Brevibacterium mcbrellneri ATCC 49030] Length = 536 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 12/158 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETTG D I+ +++ +T+ T++ + P G + EA +HGIT E+ Sbjct: 321 AFDLETTGRDPHTAHIVSAALIDM----RTHETWEWLIYPEGEIPA-EASAVHGITTEYA 375 Query: 71 KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P +I F A +AHNA +D+ E + L +IDTL Sbjct: 376 RENGMPRAQAIAQIHQVFAERTPACIVAHNAPYDLTIFARECAQYGLA-LPDFFVIDTLV 434 Query: 129 IARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDS 164 I + P + L+++C R+G+++ + H A D+ Sbjct: 435 IDKHAEPFRKGPRTLDAVCARWGVSLDN--AHDATADA 470 >gi|218708963|ref|YP_002416584.1| ribonuclease T [Vibrio splendidus LGP32] gi|218321982|emb|CAV17988.1| Ribonuclease T (RNase T) [Vibrio splendidus LGP32] Length = 241 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A+ L +D + T + P G AL +G Sbjct: 47 VVIDVETAGFNAETDALLEICAITLRMDENGDLHPASTLHFHIEPFEGANIEQAALDFNG 106 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD+ F+NA +R + Sbjct: 107 IKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDLNFVNAASERCKL 166 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L C+ G+ ++ H AL D+ ++++ Sbjct: 167 KRVPFHPFATFDTAALSGLAY--GQTVLAKACRTAGMEFDNKEAHSALYDTQKTTELFCG 224 Query: 174 MM 175 ++ Sbjct: 225 IV 226 >gi|221140978|ref|ZP_03565471.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751286|gb|ADL65463.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 897 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I + Sbjct: 8 VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|170746460|ref|YP_001752720.1| exonuclease RNase T and DNA polymerase III [Methylobacterium radiotolerans JCM 2831] gi|170652982|gb|ACB22037.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium radiotolerans JCM 2831] Length = 289 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 10/170 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + D +G + D R + P R +P +++HGI Sbjct: 1 MTVLALDFETA--NERRDSACAVGLAWIADGRVVRRESHLIRPPEMR-FAPGNIRVHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + DKP F+++ + + + +AHNA FD+G + A L R P+ + T Sbjct: 58 PADVADKPDFAAVMAPYLG--DLARGLILAHNASFDIGVLRAGLTRAGL-PVPDLAYLCT 114 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++RR P+ L + +R GI H H A D++ +++ + M Sbjct: 115 VQVSRRVFPAPEGCGLGKVARRLGIRFEH---HDAGEDAYACAEIALAAM 161 >gi|238749424|ref|ZP_04610929.1| Ribonuclease T [Yersinia rohdei ATCC 43380] gi|238712079|gb|EEQ04292.1| Ribonuclease T [Yersinia rohdei ATCC 43380] Length = 226 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 22/195 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + ++T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLRMDKDGWLLPDQTLHFHVEPFEGANLQPEALAFNG 90 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF+ EQ A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEYNALHAIFTAIRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ + ++ ++ Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTATLFCEL 208 Query: 175 M-----VGGSQINFG 184 + +GG + G Sbjct: 209 VNRWKKLGGWPVPAG 223 >gi|156979774|ref|YP_001442033.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu3] gi|156721909|dbj|BAF78326.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu3] Length = 897 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I + Sbjct: 8 VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|240115419|ref|ZP_04729481.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID18] Length = 255 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ +L GI Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPQFVAELTGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I + + +AHN++FD F+ E R P+ + Sbjct: 75 SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 131 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173 >gi|282916722|ref|ZP_06324480.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus D139] gi|282319209|gb|EFB49561.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus D139] gi|298694746|gb|ADI97968.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus ED133] gi|323439542|gb|EGA97263.1| ATP-dependent DNA helicase [Staphylococcus aureus O11] Length = 897 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I + Sbjct: 8 VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|42524627|ref|NP_970007.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] gi|39576837|emb|CAE78066.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] Length = 276 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 8/173 (4%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N+ + FD ET+G ++E GAV+ + R Q P + + +HG Sbjct: 8 NEYTYVAFDTETSGAYPVGHDVVEFGAVKWYKGEEVGR-LQFLFKPR-EPMTDFIIGIHG 65 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E + D P + E +FF + A +AH+A FD+GF+ + ++ N+ PL P + Sbjct: 66 ITNEMVADAPLITEKIREIHEFF--KGAIVMAHHAPFDLGFMAIDFEK-NQLPLLPEPAL 122 Query: 125 DTLSIARRK-HPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKM 174 T ++R+ H + L +L + I +HR+ A H+ + KM Sbjct: 123 CTSLLSRKWIHGVENHKLQTLVRHLNIDGGQAHRAYDDAKACLHVGLACFAKM 175 >gi|302879448|ref|YP_003848012.1| Exonuclease RNase T and DNA polymerase III [Gallionella capsiferriformans ES-2] gi|302582237|gb|ADL56248.1| Exonuclease RNase T and DNA polymerase III [Gallionella capsiferriformans ES-2] Length = 303 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 11/124 (8%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY----SKTNRTFQVF--LCPNGRKNSP 57 + +R +V D ETTG++S D IIE+G V L +Y + R F L G P Sbjct: 37 REMLRGVVVDTETTGINSAQDAIIELGMV-LFEYDPDTGEAGRVLGSFDQLEDPGMAIPP 95 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 E+ ++HGITDE ++ K + + F D + IAHN+KFD F+ L P Sbjct: 96 ESTEVHGITDEMVQGKRIDDAAVAAFLDGVSVV----IAHNSKFDRVFLEKRLSVFETLP 151 Query: 118 LDPS 121 S Sbjct: 152 WGCS 155 >gi|283770528|ref|ZP_06343420.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus H19] gi|283460675|gb|EFC07765.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus H19] Length = 897 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I + Sbjct: 8 VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|261253571|ref|ZP_05946144.1| ribonuclease T [Vibrio orientalis CIP 102891] gi|260936962|gb|EEX92951.1| ribonuclease T [Vibrio orientalis CIP 102891] Length = 218 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L +D + T + P G EAL+ +G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLKMDENGDLAPASTIHFHVEPFEGANLEKEALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFI--NAELQRI 113 I D F L+ + + E + EQ A +AHNA FD F+ +E ++ Sbjct: 80 IRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCSRAIMVAHNATFDHSFVMEASERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ ++ H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTAALSGLAY--GQTVLAKACKTAGMDFDNKEAHSALYDTQKTAELFCG 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|21283074|ref|NP_646162.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus MW2] gi|49486295|ref|YP_043516.1| hypothetical protein SAS1398 [Staphylococcus aureus subsp. aureus MSSA476] gi|253732097|ref|ZP_04866262.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733298|ref|ZP_04867463.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus TCH130] gi|297207885|ref|ZP_06924318.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911970|ref|ZP_07129413.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus TCH70] gi|81827855|sp|Q6G9A7|DING_STAAS RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81847815|sp|Q8NWP2|DING_STAAW RecName: Full=Probable ATP-dependent helicase dinG homolog gi|21204514|dbj|BAB95210.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus MW2] gi|49244738|emb|CAG43174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253724144|gb|EES92873.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728838|gb|EES97567.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus TCH130] gi|296887459|gb|EFH26359.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886216|gb|EFK81418.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus TCH70] Length = 897 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I + Sbjct: 8 VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|156368138|ref|XP_001627553.1| predicted protein [Nematostella vectensis] gi|156214466|gb|EDO35453.1| predicted protein [Nematostella vectensis] Length = 275 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 16/171 (9%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEA 59 MI +N V D+ETTGL NDRI++I V++ K + + C + K Sbjct: 20 MIPRNATY-CVLDVETTGLSKLNDRIVQIACVKVKPTGDKESWMSYINPCMDREKQLAGG 78 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPL 118 K+H ++ + L KP FS I W F AE+ +A+N +D + E +RI++ Sbjct: 79 YKVHHLSPDMLLKKPKFSEIVESLWRFLC--GAEYLVAYNCLYDWDMLCQEFRRIDRTES 136 Query: 119 DPSRI----------IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKH 158 +++ ID L ++ PS S + L ++ K I R+ + Sbjct: 137 GYTKLEEEFVKKFTWIDVLRLSISSFPSLSNHKLETVAKHLKIEYMSRTTY 187 >gi|15643262|ref|NP_228306.1| DNA polymerase III, epsilon subunit, putative [Thermotoga maritima MSB8] gi|4981007|gb|AAD35581.1|AE001726_15 DNA polymerase III, epsilon subunit, putative [Thermotoga maritima MSB8] Length = 189 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 17/179 (9%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67 V D ETTG D DRI+EI AV + N+ F + P R P + K+HGI++ Sbjct: 13 VVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNP--RIRIPALIQKVHGISN 70 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P +++ F D+ + + HNA FD+ F++ + P+ + IDTL Sbjct: 71 MDIVEAPDMDTVYDLFRDYV--KGTVLVFHNANFDLTFLDMMAKETGNFPIT-NPYIDTL 127 Query: 128 SIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQIN 182 ++ P S L L +R GI + R H AL D+ + + V++K++ +G +++N Sbjct: 128 DLSEEIFGRPHS---LKWLSERLGIKTTIR--HRALPDALVTARVFVKLVEFLGENRVN 181 >gi|15924445|ref|NP_371979.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|15927036|ref|NP_374569.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus N315] gi|57650410|ref|YP_186339.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus COL] gi|87161026|ref|YP_494043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195189|ref|YP_499990.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267941|ref|YP_001246884.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus JH9] gi|150394004|ref|YP_001316679.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus JH1] gi|151221578|ref|YP_001332400.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|161509623|ref|YP_001575282.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253315964|ref|ZP_04839177.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006242|ref|ZP_05144843.2| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795489|ref|ZP_05644468.1| DnaQ family protein [Staphylococcus aureus A9781] gi|258413298|ref|ZP_05681574.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9763] gi|258420595|ref|ZP_05683537.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9719] gi|258426791|ref|ZP_05688011.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9299] gi|258444789|ref|ZP_05693118.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8115] gi|258447377|ref|ZP_05695521.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6300] gi|258449738|ref|ZP_05697839.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6224] gi|258451113|ref|ZP_05699148.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5948] gi|258454593|ref|ZP_05702557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5937] gi|269203080|ref|YP_003282349.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus ED98] gi|282892951|ref|ZP_06301186.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8117] gi|282927982|ref|ZP_06335591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A10102] gi|284024454|ref|ZP_06378852.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus 132] gi|294848419|ref|ZP_06789165.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9754] gi|295407205|ref|ZP_06817005.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8819] gi|296275347|ref|ZP_06857854.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus MR1] gi|297244629|ref|ZP_06928512.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8796] gi|304380963|ref|ZP_07363621.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81832505|sp|Q7A5K4|DING_STAAN RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81855933|sp|Q99U34|DING_STAAM RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81859586|sp|Q5HFW8|DING_STAAC RecName: Full=Probable ATP-dependent helicase dinG homolog gi|122539544|sp|Q2FYH5|DING_STAA8 RecName: Full=Probable ATP-dependent helicase dinG homolog gi|123485907|sp|Q2FGY5|DING_STAA3 RecName: Full=Probable ATP-dependent helicase dinG homolog gi|13701253|dbj|BAB42548.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus N315] gi|14247226|dbj|BAB57617.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|57284596|gb|AAW36690.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus COL] gi|87127000|gb|ABD21514.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202747|gb|ABD30557.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741010|gb|ABQ49308.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus JH9] gi|149946456|gb|ABR52392.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus JH1] gi|150374378|dbj|BAF67638.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|160368432|gb|ABX29403.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257789461|gb|EEV27801.1| DnaQ family protein [Staphylococcus aureus A9781] gi|257839862|gb|EEV64330.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9763] gi|257843543|gb|EEV67950.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9719] gi|257849952|gb|EEV73910.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9299] gi|257850282|gb|EEV74235.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8115] gi|257853568|gb|EEV76527.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6300] gi|257856986|gb|EEV79886.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6224] gi|257861168|gb|EEV83981.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5948] gi|257862976|gb|EEV85740.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5937] gi|262075370|gb|ACY11343.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus ED98] gi|269940948|emb|CBI49332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282590279|gb|EFB95359.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A10102] gi|282764948|gb|EFC05073.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8117] gi|285817135|gb|ADC37622.1| DinG family ATP-dependent helicase YoaA [Staphylococcus aureus 04-02981] gi|294824445|gb|EFG40868.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9754] gi|294967918|gb|EFG43947.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8819] gi|297178659|gb|EFH37905.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8796] gi|304340488|gb|EFM06424.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315129170|gb|EFT85165.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus CGS03] gi|315197799|gb|EFU28133.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus CGS01] gi|320140373|gb|EFW32229.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus MRSA131] gi|320142700|gb|EFW34503.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314132|gb|AEB88545.1| Probable ATP-dependent helicase dinG -like protein [Staphylococcus aureus subsp. aureus T0131] gi|329723190|gb|EGG59721.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus subsp. aureus 21189] gi|329727432|gb|EGG63888.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus subsp. aureus 21172] Length = 897 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I + Sbjct: 8 VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|302333066|gb|ADL23259.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus JKD6159] Length = 897 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I + Sbjct: 8 VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|91792755|ref|YP_562406.1| ribonuclease T [Shewanella denitrificans OS217] gi|123356922|sp|Q12PE3|RNT_SHEDO RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|91714757|gb|ABE54683.1| RNAse T [Shewanella denitrificans OS217] Length = 226 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++ D ++EI AV LL + ++T + P G PEAL + Sbjct: 20 VVIDVETAGFNANTDALLEI-AVTLLKMNDDGILVLDKTVHFHIEPFEGANLEPEALAFN 78 Query: 64 GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113 GI T+ + +K +F IF + +AHNA FD+ F+N ++R + Sbjct: 79 GIDPTNPLRGAVSEKEAFLEIFKTVKKGQKASDCHRSIIVAHNAAFDLSFVNKAIERNDL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++A L CK GI ++ H AL D+ ++++ Sbjct: 139 KRSPFHPFASFDTATLAGLS--IGHTVLAKACKMAGIDFDNKEAHSALYDTERTAELFCH 196 Query: 174 MM 175 ++ Sbjct: 197 IV 198 >gi|82751054|ref|YP_416795.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122] gi|123549199|sp|Q2YY51|DING_STAAB RecName: Full=Probable ATP-dependent helicase dinG homolog gi|82656585|emb|CAI81008.1| probable ATP-dependent DNA helicase [Staphylococcus aureus RF122] Length = 897 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 20/166 (12%) Query: 11 VFDIETTGLDSKNDRIIEIGA-----VELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHG 64 V D+ETTG D II+IG ++++D Y RT + P L Sbjct: 8 VVDLETTGNQLDFDDIIQIGITFVRNIQIIDTYHSMIRT--------NLEIPPFIQALTS 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + L+ P F+ + +D N ++ ++AHN FD+ FI + N P R+I Sbjct: 60 IEENMLQQAPYFNQVAQGIYD--NMKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKRVI 116 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 DTL I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 117 DTLEIFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|323442219|gb|EGA99850.1| ATP-dependent DNA helicase [Staphylococcus aureus O46] Length = 897 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I + Sbjct: 8 VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|153000260|ref|YP_001365941.1| ribonuclease T [Shewanella baltica OS185] gi|304409837|ref|ZP_07391457.1| ribonuclease T [Shewanella baltica OS183] gi|307304193|ref|ZP_07583946.1| ribonuclease T [Shewanella baltica BA175] gi|166200019|sp|A6WM39|RNT_SHEB8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|151364878|gb|ABS07878.1| ribonuclease T [Shewanella baltica OS185] gi|304352355|gb|EFM16753.1| ribonuclease T [Shewanella baltica OS183] gi|306913091|gb|EFN43514.1| ribonuclease T [Shewanella baltica BA175] Length = 223 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S+ D ++EI AV LL ++T + P G PEAL + Sbjct: 20 VVIDVETAGFNSQTDALLEI-AVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFN 78 Query: 64 GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113 GI T+ + +K +F IF + +AHNA FD GF++ ++R + Sbjct: 79 GIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++A L C GI ++ H AL D+ ++++ Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCH 196 Query: 174 MM 175 ++ Sbjct: 197 IV 198 >gi|282921701|ref|ZP_06329418.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9765] gi|282593963|gb|EFB98952.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9765] Length = 897 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I + Sbjct: 8 VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|260779364|ref|ZP_05888256.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450] gi|260605528|gb|EEX31823.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450] Length = 219 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L +D + + T + P G EAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLKMDENGELQPASTIHFHVEPFEGANLEKEALDFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD F+ A +R + Sbjct: 80 IHDPFSPLRGAVPESEALKEIYKLVRKEQKAADCSRAIMVAHNATFDHNFVMAASERSKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ ++ H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMDFDNKEAHSALYDTLKTAELFCG 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|257876649|ref|ZP_05656302.1| DNA polymerase III [Enterococcus casseliflavus EC20] gi|257810815|gb|EEV39635.1| DNA polymerase III [Enterococcus casseliflavus EC20] Length = 918 Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG DS DRII+ G V + D NR F + P+ R+ S + +L IT++ + Sbjct: 7 VVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTHITNQQV 64 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 P F I ++ + N ++AHN FD F++ E R PL P IDT+ + Sbjct: 65 SKAPYFEDIADTIYNLLS--NTIFVAHNIYFDYHFLSNEFVRCGLPPLSIPG--IDTVEL 120 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++ P+ S L L G H + H A D+ + + +++ Sbjct: 121 SQVFLPTESSFRLGDLADSIG--FRHDNPHQADSDAEVTAALFL 162 >gi|126173968|ref|YP_001050117.1| ribonuclease T [Shewanella baltica OS155] gi|217973711|ref|YP_002358462.1| ribonuclease T [Shewanella baltica OS223] gi|166200018|sp|A3D3D5|RNT_SHEB5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|125997173|gb|ABN61248.1| RNAse T [Shewanella baltica OS155] gi|217498846|gb|ACK47039.1| ribonuclease T [Shewanella baltica OS223] Length = 223 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S+ D ++EI AV LL ++T + P G PEAL + Sbjct: 20 VVIDVETAGFNSQTDALLEI-AVTLLKMDNEGVIGIDKTLHFHIEPFEGANLEPEALAFN 78 Query: 64 GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113 GI T+ + +K +F IF + +AHNA FD GF++ ++R + Sbjct: 79 GIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++A L C GI ++ H AL D+ ++++ Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCH 196 Query: 174 MM 175 ++ Sbjct: 197 IV 198 >gi|49483644|ref|YP_040868.1| hypothetical protein SAR1466 [Staphylococcus aureus subsp. aureus MRSA252] gi|257425521|ref|ZP_05601946.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428180|ref|ZP_05604578.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 65-1322] gi|257433568|ref|ZP_05609926.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus E1410] gi|257436410|ref|ZP_05612457.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M876] gi|282904038|ref|ZP_06311926.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C160] gi|282905803|ref|ZP_06313658.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908773|ref|ZP_06316591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911034|ref|ZP_06318836.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914246|ref|ZP_06322033.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M899] gi|282919169|ref|ZP_06326904.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C427] gi|282924353|ref|ZP_06332027.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C101] gi|283958220|ref|ZP_06375671.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus A017934/97] gi|293501272|ref|ZP_06667123.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 58-424] gi|293510233|ref|ZP_06668941.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M809] gi|293526828|ref|ZP_06671512.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M1015] gi|295427965|ref|ZP_06820597.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591065|ref|ZP_06949703.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus MN8] gi|81828017|sp|Q6GGV4|DING_STAAR RecName: Full=Probable ATP-dependent helicase dinG homolog gi|49241773|emb|CAG40464.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271978|gb|EEV04116.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275021|gb|EEV06508.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 65-1322] gi|257281661|gb|EEV11798.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus E1410] gi|257284692|gb|EEV14812.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M876] gi|282313740|gb|EFB44133.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C101] gi|282316979|gb|EFB47353.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C427] gi|282322314|gb|EFB52638.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M899] gi|282324729|gb|EFB55039.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327037|gb|EFB57332.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331095|gb|EFB60609.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595656|gb|EFC00620.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C160] gi|283790369|gb|EFC29186.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920386|gb|EFD97450.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M1015] gi|291096277|gb|EFE26538.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 58-424] gi|291467177|gb|EFF09695.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M809] gi|295128323|gb|EFG57957.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575951|gb|EFH94667.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus MN8] gi|312438140|gb|ADQ77211.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus TCH60] gi|315195353|gb|EFU25740.1| hypothetical protein CGSSa00_06780 [Staphylococcus aureus subsp. aureus CGS00] Length = 897 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I + Sbjct: 8 VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAEEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|88860421|ref|ZP_01135059.1| RNase T [Pseudoalteromonas tunicata D2] gi|88817619|gb|EAR27436.1| RNase T [Pseudoalteromonas tunicata D2] Length = 221 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 19/178 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI L +D ++T + P G A++ +G Sbjct: 19 VVIDVETAGFNNQTDALLEIAVTTLKMDDEGVLSLDKTLHFHITPFEGANIEQAAIEFNG 78 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR--I 113 I D F L+ S F E F ++ Q + +AHNA FD GF+NA ++R I Sbjct: 79 I-DPFSALRGAVEESIAFKEICKFVSKSQKDAGCQRSVIVAHNAAFDQGFVNAAVERCKI 137 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + P P DT S+A + L C GI + H A+ D+ ++++ Sbjct: 138 KRTPFHPFVSFDTTSLAGLAL--GQTVLAKACIAAGIEFDNSQAHSAVYDTERTAELF 193 >gi|332756741|gb|EGJ87088.1| exonuclease family protein [Shigella flexneri 4343-70] gi|333004838|gb|EGK24360.1| exonuclease family protein [Shigella flexneri K-218] Length = 220 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSLLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD +R+ P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFD--------RRVL--PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|329896219|ref|ZP_08271397.1| Ribonuclease T [gamma proteobacterium IMCC3088] gi|328921890|gb|EGG29257.1| Ribonuclease T [gamma proteobacterium IMCC3088] Length = 211 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 28/197 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ D+ET G +++ D ++E+ A EL + + F G AL+ Sbjct: 20 VIIDVETGGFNAQTDALLEVAATIVRMEPDGELYVHETVHHNVVPF---EGANLEASALE 76 Query: 62 LHGITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR- 112 GI E L + + SIF N A + HNA FD GFINA ++R Sbjct: 77 FTGIDPYHPFREALSEADALESIFKAIRKEIKSTNCTRAVLVGHNAHFDAGFINAAVERT 136 Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD----SHLL 167 + ++P P DT ++A + L C + GI +++ H A D +HL Sbjct: 137 GLKRNPFHPFSYFDTATLAGLAF--GQTVLAKACLQAGIEFDNKAAHSAAYDADRTAHLF 194 Query: 168 SDVY-IKMMVGGSQINF 183 ++ I GG N Sbjct: 195 CNIVNIWRQCGGFDANL 211 >gi|312829847|emb|CBX34689.1| dnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 897 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I + Sbjct: 8 VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|152979466|ref|YP_001345095.1| ribonuclease T [Actinobacillus succinogenes 130Z] gi|150841189|gb|ABR75160.1| ribonuclease T [Actinobacillus succinogenes 130Z] Length = 226 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 26/196 (13%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGR 53 + KN+ R +V D+ET GL+ + D ++E+ AV L + ++T+ + P G Sbjct: 19 LLKNRFRGYYPVVIDVETAGLNCQTDGLLELAAVTLKMNDRGDLLPDQTYHCHIRPFEGA 78 Query: 54 KNSPEALKLHGITDE-------FLKDKPSFSSIFSEFWDFFNEQNAEW-----IAHNAKF 101 +PE++K++GI E + + + + +F ++NA +AHNA F Sbjct: 79 GINPESMKINGIDLESPIRNAIAVSESEAITGLFQMVRR--GQKNAGCQRSIIVAHNAAF 136 Query: 102 DVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 D GF+ A +R I ++P P DT +++ + L C+ I H Sbjct: 137 DHGFVMAAAERTKIKRNPFHPFGSFDTATLSGLMF--GQTVLIKACQSASIPFDSNQAHS 194 Query: 160 ALLDSHLLSDVYIKMM 175 AL D+ ++++ M+ Sbjct: 195 ALYDTERTAELFCYMV 210 >gi|227495535|ref|ZP_03925851.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] gi|226831082|gb|EEH63465.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] Length = 206 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKLHGITD 67 + DIETTGL +D I E+ AV+ Y K TF + P GR+ +L GI + Sbjct: 18 VSVDIETTGL-GDSDAITELAAVK---YQKGQVVETFSSLVNP-GRQIPVFITRLTGIDN 72 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + D P+ + F +F + + +AHNA+FD F+ ++ + P+ IDT+ Sbjct: 73 QLVADAPTLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQFPAS-IDTV 131 Query: 128 SIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R P + + L +L +G I + + H AL D++ ++Y Sbjct: 132 FFSRALLPRPQVQNHRLGTLAHHFG--IKNPNAHRALADAYTCLELY 176 >gi|262283016|ref|ZP_06060783.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp. 2_1_36FAA] gi|262261268|gb|EEY79967.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp. 2_1_36FAA] Length = 818 Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 20/174 (11%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH--- 63 M+ + D+E TG S +II++G V +L+ + +T+Q + P+ EAL+ H Sbjct: 1 MKYAIVDLEATGTGS-TAKIIQVGIV-ILEDGEIKQTYQTDINPH------EALEEHIKQ 52 Query: 64 --GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 G++D+ L P FS + E ++ ++A ++AHN KFD + L D L P Sbjct: 53 LTGLSDQRLSQAPDFSQVAREIYELI--EDAVFVAHNVKFDANLLAESLFWEGFDLLSPR 110 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ P+ + L+SLC+ I + H A+ D+ + +++K+ Sbjct: 111 --VDTVELAQVVFPTYEKYGLSSLCELLEIPLEQ--AHTAISDAMATALLFLKI 160 >gi|238854632|ref|ZP_04644962.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 269-3] gi|260664425|ref|ZP_05865277.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US] gi|282932977|ref|ZP_06338374.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] gi|238832422|gb|EEQ24729.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 269-3] gi|260561490|gb|EEX27462.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US] gi|281303012|gb|EFA95217.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] Length = 936 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 10/166 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69 V D+ETTG DRII+ G ++ + +T+ + P + P+A++ L GI Sbjct: 12 VVDLETTGTRRGQDRIIQFGCA-IIKNRQIIKTYSFLINPEA--DIPQAVQNLTGIKPTD 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P F ++ D Q+ ++AHN FD+ F+NAEL N P +R IDT+ + Sbjct: 69 VINQPVFKKYAAQIEDIL--QDTVFVAHNINFDLPFLNAELAA-NSFPKLHNRAIDTVEL 125 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ P+ L+ L + + + H + H A D++ + + +K+ Sbjct: 126 SKIAFPTLPSYRLSDLT--HSLNLKHTNPHQADSDAYATASLLLKI 169 >gi|259908542|ref|YP_002648898.1| ribonuclease T [Erwinia pyrifoliae Ep1/96] gi|224964164|emb|CAX55671.1| Ribonuclease T [Erwinia pyrifoliae Ep1/96] gi|283478503|emb|CAY74419.1| ribonuclease T [Erwinia pyrifoliae DSM 12163] Length = 219 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+K + ++EI AV L +D + + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDDTLHFHVEPFAGSVLLPEALTFNG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF + A +AHNA FD+ F+NA +R + Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C G+ H AL D+ +D++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLAKACHAAGMAFDSAQAHSALYDTLQTADLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|254426843|ref|ZP_05040550.1| ribonuclease T [Alcanivorax sp. DG881] gi|196193012|gb|EDX87971.1| ribonuclease T [Alcanivorax sp. DG881] Length = 228 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 19/190 (10%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRT-----FQVFLCPNGRKN 55 +R +V D+ET G +S+ D ++EI AV + +D R F V P G Sbjct: 16 LRFRGFLPVVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRIQFHVDPFP-GANL 74 Query: 56 SPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFIN 107 AL GI + ++ + +F + A + HN+ FD GF+N Sbjct: 75 EQAALDFTGIDPSNPLRGAVSEETALKGVFEPIRKAVKQHGCSRAVLVGHNSFFDQGFLN 134 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A R I + P P DT ++A + + L C+ GI S R H AL D+ Sbjct: 135 AATDRADIKRSPFHPFSSFDTATLAGLVY--GQTVLAKACEAAGIRFSQREAHSALYDAT 192 Query: 166 LLSDVYIKMM 175 ++++ M+ Sbjct: 193 RTAELFCSMV 202 >gi|108759005|ref|YP_633932.1| exonuclease [Myxococcus xanthus DK 1622] gi|108462885|gb|ABF88070.1| exonuclease [Myxococcus xanthus DK 1622] Length = 988 Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGIT 66 R + D+ETTGLD + D +IE+G + + + R +++ + + P + +L G+T Sbjct: 10 RHVFLDLETTGLDPRVDEVIELGCIFFENGREVERFARLY---SASRPLPLTIRRLTGLT 66 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRII 124 D L+ P F + +E E+ + W +AHNA F+ GF+ L I+ LD ++ Sbjct: 67 DADLEGHPRFGTDIAE----LREKLSGWTVVAHNAPFEKGFLPDLLGPIHAPVLDSCELM 122 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L HP + L SL + G+ + R H A+ D + V + M Sbjct: 123 HYL------HPELPSHSLESLLRWGGLAL--RQPHRAVSDCEAVYSVLVHAM 166 >gi|282890349|ref|ZP_06298877.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499731|gb|EFB42022.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 249 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 19/163 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 + D ETTGLD DRIIE+ AV + + F+ + P PE ++++H IT E Sbjct: 10 VCIDCETTGLDVHADRIIEV-AVARFTFDQILEQFESLINPEC--PIPESSIQIHHITAE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR------INKDPLDPSR 122 + DKP + + + D + H FD+ I +R I ++P Sbjct: 67 MVADKPPITQVIPQILDAVRSHT--IVGHGVLFDIELIAVAAERAGIPCSIRQNPY---- 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLD 163 +DTL +AR S N L L + I +HR+ L++ Sbjct: 121 -LDTLRLARLYGESPINSLEQLRMHFNIQFEGAHRAMSDVLVN 162 >gi|257785157|ref|YP_003180374.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] gi|257473664|gb|ACV51783.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] Length = 978 Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 10/149 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL K +IEI A +L R FQ F+ P G E L ITDE Sbjct: 20 VVLDTETTGLSFKKCSLIEISAAKLSGREIIER-FQTFVDP-GCPIPEEITTLTSITDED 77 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K PS + +F +AHNA FD FI +R+ IDTLS+ Sbjct: 78 VKGAPSAKEAVAALAEFVG--GLPVLAHNATFDRTFI----ERVPGGTSVSDTWIDTLSL 131 Query: 130 ARRKHPS-SRNDLNSLCKRYG-ITISHRS 156 +R P S + L+S+ + +G + ++HR+ Sbjct: 132 SRIALPRLSSHKLSSMAEAFGTMKVTHRA 160 >gi|251796459|ref|YP_003011190.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. JDR-2] gi|247544085|gb|ACT01104.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. JDR-2] Length = 953 Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 10/172 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65 M+ V D+ETTG S +D I+++G L D + T+ F+ P P + +L GI Sbjct: 1 MKFAVLDLETTG-HSVSDDILQVGLAVLDDNLEIVETYSSFVRPT--IEIPAFITQLTGI 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + D P + + + ++A +AHN FD GF+N L R P R +D Sbjct: 58 DADMVADAPELDEVLMQLIPYL--EDAVLVAHNVNFDAGFLNQALDRCGYHPFIGRR-LD 114 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIKM 174 T+ + R +PS + L ++ + +GI HR+ A+ + L + K+ Sbjct: 115 TIELLRILYPSITTYQLGAVTELFGIAHDQHHRADSDAIATAELFAQSVQKL 166 >gi|86153724|ref|ZP_01071927.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612917|ref|YP_001000159.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81-176] gi|167005117|ref|ZP_02270875.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81-176] gi|85842685|gb|EAQ59897.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250067|gb|EAQ73025.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81-176] Length = 253 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 + DIE+TG SK + I+EIGAV++ + + R FQ F+ K PE + +L GIT E Sbjct: 74 IVDIESTGGVSKGE-ILEIGAVKIQNSKEIAR-FQSFV---KVKEIPENITELTGITYEM 128 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ PS + + S+F F +++ ++AHN +FD FI+ L L RI T+ Sbjct: 129 VENAPSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISRALNECGFGILLNRRIC-TIEF 185 Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154 A+ S + L L + G+ +H Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENTH 210 >gi|333003546|gb|EGK23086.1| exonuclease family protein [Shigella flexneri VA-6] gi|333004693|gb|EGK24216.1| exonuclease family protein [Shigella flexneri K-272] gi|333018414|gb|EGK37712.1| exonuclease family protein [Shigella flexneri K-227] Length = 220 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSLLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|332983437|ref|YP_004464878.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1 BON] gi|332701115|gb|AEE98056.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1 BON] Length = 296 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 6/166 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL+ D+I+EI AV+ Y + ++ + P G A K++ ITDE Sbjct: 123 VAIDLETTGLNPAIDKIVEIAAVK-FKYGEIIDSYTTLINP-GIHIPSSASKINHITDET 180 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P S + +F + + + HNA FD+ F+ ++ D +P IDTL Sbjct: 181 VHGAPDLSEVLPNLLNFIGD--SILVMHNASFDLKFLKYHAAKLGYDISNP--FIDTLPT 236 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ N + Y + + H A D+ + V IK + Sbjct: 237 CKKLFTDFENYQLATVANYLKISTADTFHRACNDAEICGPVLIKCI 282 >gi|283470668|emb|CAQ49879.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus ST398] Length = 897 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N + + + P L I + Sbjct: 8 VVDLETTGNQLDFDDIIQIG----ITFVRNNHIIDTYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAEEIYD--KIKDCIFVAHNVDFDLNFIKKAFKNCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|257430810|ref|ZP_05607192.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 68-397] gi|257278938|gb|EEV09557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 68-397] Length = 905 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I + Sbjct: 8 VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAEEIYD--KIKDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|254493534|ref|ZP_05106705.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291] gi|268681897|ref|ZP_06148759.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332] gi|226512574|gb|EEH61919.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291] gi|268622181|gb|EEZ54581.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332] gi|317164039|gb|ADV07580.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae TCDC-NG08107] Length = 264 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ +L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I + + +AHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 140 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182 >gi|291044082|ref|ZP_06569798.1| DNA polymerase III [Neisseria gonorrhoeae DGI2] gi|291012545|gb|EFE04534.1| DNA polymerase III [Neisseria gonorrhoeae DGI2] Length = 264 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ +L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I + + +AHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 140 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182 >gi|317503311|ref|ZP_07961361.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae DSM 15606] gi|315665570|gb|EFV05187.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae DSM 15606] Length = 286 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 11/142 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTGLD NDRII++ +++ K R + N ++ PE + +L GI DE Sbjct: 10 VVFDLETTGLDIVNDRIIQLSFIKVYPDGKEERGDHLI---NPGRHIPEMITELTGIDDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDT 126 +KD PSF I + + F + ++ N+ +FDV + E R D R+ID Sbjct: 67 KVKDAPSFKQISTTLAETF--KGCDFAGFNSNRFDVPMLAEEFLRAGIDFDFSKCRLIDA 124 Query: 127 LSIARRKHPSSRNDLNSLCKRY 148 +I H R +L + K Y Sbjct: 125 QAIF---HKMERRNLAAAYKFY 143 >gi|194098334|ref|YP_002001392.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae NCCP11945] gi|268598740|ref|ZP_06132907.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11] gi|193933624|gb|ACF29448.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae NCCP11945] gi|268582871|gb|EEZ47547.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11] Length = 264 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ +L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I + + +AHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 140 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182 >gi|319954745|ref|YP_004166012.1| exonuclease rnase t and DNA polymerase iii [Cellulophaga algicola DSM 14237] gi|319423405|gb|ADV50514.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga algicola DSM 14237] Length = 220 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 19/175 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPN--GRKNSPEALKLHGITD 67 V D ETTG D NDRI+ IGAV+L+ R F+VF+ G+ +P +HGI Sbjct: 38 VLDTETTGFDYSNDRILCIGAVKLVQQQIAIRDGFEVFVTQQVYGKDAAP----IHGILK 93 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + +F + N+ IAH+A FD+ IN L R N P + +DT Sbjct: 94 NSTVPRVTELEALEQFITYVG--NSVIIAHHAIFDLNMINNALLR-NGLPELKNTYLDTS 150 Query: 128 SIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + R + +R + L+ L ++ +IS + +H A+ D+++ + +++K++ Sbjct: 151 HLYKKTIIRSNLITRKENYTLDELADKF--SISKKDRHTAMGDAYITAILFLKII 203 >gi|268603417|ref|ZP_06137584.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1] gi|268587548|gb|EEZ52224.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1] Length = 264 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ +L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I + + +AHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 140 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182 >gi|238757732|ref|ZP_04618915.1| Ribonuclease T [Yersinia aldovae ATCC 35236] gi|238703975|gb|EEP96509.1| Ribonuclease T [Yersinia aldovae ATCC 35236] Length = 226 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 22/195 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAKTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 90 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF EQ A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ + ++ ++ Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCEL 208 Query: 175 M-----VGGSQINFG 184 + +GG + G Sbjct: 209 VNRWKKLGGWPVPAG 223 >gi|257900260|ref|ZP_05679913.1| DNA polymerase subunit III [Enterococcus faecium Com15] gi|257838172|gb|EEV63246.1| DNA polymerase subunit III [Enterococcus faecium Com15] Length = 295 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 6/162 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL + I++IGA++ + +R +Q + P S K+ G+ E Sbjct: 125 VVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELED 183 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P+F + F + +AHNA FD+ F+ +L N + R+IDTL + Sbjct: 184 VVNMPTFEDFSPQLMSFIS--CYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLPL 241 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ARR + + L +L K Y + + + S H AL D + + VY Sbjct: 242 ARRHFETPNHKLITL-KDY-LNLDNNS-HDALEDCLVTNKVY 280 >gi|268684113|ref|ZP_06150975.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679] gi|268624397|gb|EEZ56797.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679] Length = 264 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ +L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I + + +AHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 140 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182 >gi|257897430|ref|ZP_05677083.1| DNA polymerase subunit III [Enterococcus faecium Com12] gi|257833995|gb|EEV60416.1| DNA polymerase subunit III [Enterococcus faecium Com12] Length = 291 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 6/162 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL + I++IGA++ + +R +Q + P S K+ G+ E Sbjct: 125 VVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELED 183 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P+F + F + +AHNA FD+ F+ +L N + R+IDTL + Sbjct: 184 VVNMPTFEDFSPQLMSFIS--CYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLPL 241 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ARR + + L +L K Y + + + S H AL D + + VY Sbjct: 242 ARRHFETPNHKLITL-KDY-LNLDNNS-HDALEDCLVTNKVY 280 >gi|262199242|ref|YP_003270451.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262082589|gb|ACY18558.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 308 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 10/109 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLHGIT 66 +VFD+ETTG D + D+IIE+ L NR +++ R + P A ++HGI+ Sbjct: 7 LVFDVETTGTDRRRDQIIELCVQFGLGDDAPNRVWRI------RPDVAIEPAAQEVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 + L + P F + E + F + +N FD+G + AE +R+ + Sbjct: 61 MDDLAECPRFPEVADELRELFASATV-LVGYNVSFDIGMLQAEYERLGQ 108 >gi|332140721|ref|YP_004426459.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype'] gi|327550743|gb|AEA97461.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype'] Length = 210 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++ D ++E+ AV + +D + TF + P G P AL+ +G Sbjct: 18 VVIDVETAGFNAGTDALLELAAVTVKMDDDGILHPDETFHYHIDPFEGANLEPAALEFNG 77 Query: 65 I-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQRIN-- 114 I + L+ S + + Q + +AHNA FD F+NA ++R N Sbjct: 78 IDPNCALRGAIEESEAMKDLCKGIRKAQKNAGCQRSVIVAHNATFDQSFVNAAIERCNIK 137 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + P P DT S+A + L C+ GI H AL D+ ++++ M Sbjct: 138 RTPFHPFVSFDTTSLAGLA--LGQTVLVKACRAAGIAFDQSEAHSALYDAQKTTELFCFM 195 Query: 175 M 175 + Sbjct: 196 V 196 >gi|268686367|ref|ZP_06153229.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035] gi|268626651|gb|EEZ59051.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035] Length = 264 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ +L GI Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I + + +AHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 140 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182 >gi|257889197|ref|ZP_05668850.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733] gi|257825269|gb|EEV52183.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733] Length = 295 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 6/162 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL + I++IGA++ + +R +Q + P S K+ G+ E Sbjct: 125 VVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELED 183 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P+F + F + +AHNA FD+ F+ +L N + R+IDTL + Sbjct: 184 VVNMPTFEDFSPQLMSFIS--CYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLPL 241 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ARR + + L +L K Y + + + S H AL D + + VY Sbjct: 242 ARRHFETPNHKLITL-KDY-LNLDNNS-HDALEDCLVTNKVY 280 >gi|227550341|ref|ZP_03980390.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium TX1330] gi|257886431|ref|ZP_05666084.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501] gi|227180543|gb|EEI61515.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium TX1330] gi|257822287|gb|EEV49417.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501] Length = 297 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 6/162 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL + I++IGA++ + +R +Q + P S K+ G+ E Sbjct: 127 VVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELED 185 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P+F + F + +AHNA FD+ F+ +L N + R+IDTL + Sbjct: 186 VVNMPTFEDFSPQLMSFIS--CYTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLPL 243 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ARR + + L +L K Y + + + S H AL D + + VY Sbjct: 244 ARRHFETPNHKLITL-KDY-LNLDNNS-HDALEDCLVTNKVY 282 >gi|293374694|ref|ZP_06621002.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sanguinis PC909] gi|292646608|gb|EFF64610.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sanguinis PC909] Length = 1528 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I N +V+D+ETTG + D IIEI AV++ + + + F F P+ RK S + ++ Sbjct: 426 IPLNDATYVVYDVETTGFSTNYDVIIEIAAVKIKNGTIIDE-FSDFANPH-RKLSLKTIE 483 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L I + + P + F ++ ++ +AHNA FD+G + +R N D + Sbjct: 484 LTHILQSDVDNAPELEDVMKRFKEW--SEDCVLVAHNAAFDMGHLEQTYKRFNLGVCD-N 540 Query: 122 RIIDTLSIAR 131 ++DTL++AR Sbjct: 541 PVLDTLALAR 550 >gi|30063256|ref|NP_837427.1| exodeoxyribonuclease X [Shigella flexneri 2a str. 2457T] gi|56479974|ref|NP_707706.2| exodeoxyribonuclease X [Shigella flexneri 2a str. 301] gi|30041508|gb|AAP17236.1| hypothetical protein S1920 [Shigella flexneri 2a str. 2457T] gi|56383525|gb|AAN43413.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|281601259|gb|ADA74243.1| Exodeoxyribonuclease 10 [Shigella flexneri 2002017] gi|313650662|gb|EFS15064.1| exonuclease family protein [Shigella flexneri 2a str. 2457T] gi|332757646|gb|EGJ87979.1| exonuclease family protein [Shigella flexneri 2747-71] gi|332758031|gb|EGJ88357.1| exonuclease family protein [Shigella flexneri K-671] gi|332766817|gb|EGJ97018.1| exonuclease family protein [Shigella flexneri 2930-71] gi|333018617|gb|EGK37911.1| exonuclease family protein [Shigella flexneri K-304] Length = 220 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSLLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD +R+ P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFD--------RRVL--PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHR---SKHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGLKYSNMALYKTRKLNVQTPLGLHHHRALYDCYITAALLIDIM 151 >gi|220920536|ref|YP_002495837.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] gi|219945142|gb|ACL55534.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] Length = 189 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 10/170 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR + D ET + + D +G + D R ++ P + SP +++HGI Sbjct: 1 MRTLAIDFETA--NERRDSACAVGLAWIEDGRVVRREARLIR-PAEMRFSPFNVRVHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + D P F++ + F A +AHNA FD+G + A L D + + T Sbjct: 58 PEDVADAPDFAAAMAPF--LPEIAGALVLAHNASFDIGVLAAALAACGLPQPDYTSLC-T 114 Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L +ARR+ P R L +L R GI H H A D+ + ++V + M Sbjct: 115 LQLARRQWPGQERYRLPALAARLGIAFRH---HDAGEDAFVCAEVALAAM 161 >gi|325269040|ref|ZP_08135661.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella multiformis DSM 16608] gi|324988661|gb|EGC20623.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella multiformis DSM 16608] Length = 284 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+E TGLD NDRII+I ++ K R +F+ P G+ E +L GI+DE Sbjct: 10 VIFDLEATGLDLVNDRIIQISFIKAYPDGKEERE-NIFINP-GKPIPSEVTQLTGISDED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127 + + P+F E D F+ ++ N+ +FDV + E R D SR+ID Sbjct: 68 VAEAPTFKQKAKELADKFS--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDFTKSRLIDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 +I H R +L + K Y Sbjct: 126 NIY---HKMERRNLAAAYKFY 143 >gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] Length = 314 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 10/186 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRII L + + + P + P + +HG+T + L Sbjct: 12 VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTTVNP---ERDPGPVWIHGLTSDVL 67 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + +EF + +AHNA FD I E R + R+ T++++ Sbjct: 68 EGAPLFKDVAAEFAARL--EGRVLVAHNAVFDWQMIAREYARARGEAPVRQRLC-TIALS 124 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + K P + L SL +G+ R H AL D+ +L++ + + + +E Sbjct: 125 KELKLPLPNHKLESLAAHFGVV--QRRAHHALDDARVLAEAFRPSLRAAAAGGVRLPLHE 182 Query: 190 DRFFKE 195 R E Sbjct: 183 CRPLTE 188 >gi|240016771|ref|ZP_04723311.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA6140] gi|240112673|ref|ZP_04727163.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae MS11] Length = 255 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ +L GI Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I + + +AHN++FD F+ E R P+ + Sbjct: 75 SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 131 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173 >gi|149194547|ref|ZP_01871643.1| Exonuclease [Caminibacter mediatlanticus TB-2] gi|149135291|gb|EDM23771.1| Exonuclease [Caminibacter mediatlanticus TB-2] Length = 204 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 15/173 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D ETTGLD+K D II IGAV ++ +K ++ F ++ +K S +++K+H IT Sbjct: 31 VVIDTETTGLDTKKDEIISIGAV-IVKNNKILLSKKFHIY-VKTTKKISNDSIKIHKITP 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 LK+ EF +F QN + + +FD+ IN ++ L +R I+ Sbjct: 89 TTLKNAVETKEAIYEFLNFI--QNRPIVGYYLEFDIAMINKLTKKYLGIKL-SNRQIEVS 145 Query: 128 SIARRKH----PSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S+ K P DL +S+ K + I KH AL D+ + + +YIK+ Sbjct: 146 SLYYDKKIGIIPQKNVDLRFDSIMKDLNLPIF--KKHNALNDAIMTALIYIKL 196 >gi|269102191|ref|ZP_06154888.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761] gi|268162089|gb|EEZ40585.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761] Length = 221 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 22/184 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G EAL+ +G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLKMDDDGWLHPATTLHFHVTPFEGAILHKEALEFNG 79 Query: 65 ITDEF------LKDKPSFSSIFSEFWDFFNEQNAEW-----IAHNAKFDVGFINAELQR- 112 I D F + + + IF + ++NA+ +AHNA FD F+ A +R Sbjct: 80 IRDPFSPLRGAVSEDTALKEIFKQIRK--EQKNADCSRAIMVAHNANFDHSFVMAAAERA 137 Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + ++P P DT +++ + L C+ I ++ H AL D+ ++++ Sbjct: 138 KLKRNPFHPFATFDTAALSGLA--LGQTVLAKACQTANIPFDNKEAHSALYDTERTAELF 195 Query: 172 IKMM 175 K++ Sbjct: 196 CKIV 199 >gi|240127974|ref|ZP_04740635.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035] Length = 255 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ +L GI Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I + + +AHN++FD F+ E R P+ + Sbjct: 75 SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 131 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173 >gi|229084648|ref|ZP_04216916.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-44] gi|228698671|gb|EEL51388.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-44] Length = 930 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I ++ AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQVAAVVVED-GEILEIFSSFVNPE-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ +K P F + + Q A ++AHN FD F+ EL++ ++ + ID Sbjct: 62 DEDLVKQAPLFCDVAPMIVELL--QGAYFVAHNVHFDWNFLREELKQAGYGEVNCQK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ + ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALVTAELFLQFL 167 >gi|310823691|ref|YP_003956049.1| exonuclease [Stigmatella aurantiaca DW4/3-1] gi|309396763|gb|ADO74222.1| Exonuclease [Stigmatella aurantiaca DW4/3-1] Length = 982 Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 17/154 (11%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + D+ETTGLD + D +IE+GA+ ++ + R P+ R +L GI D Sbjct: 10 RHVFLDLETTGLDPRVDEVIELGAL-FFEHGREVRRIARMYAPS-RPLPITIRRLTGIED 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPLDPSRIID 125 L KP F S E E W +AHNA F+ GF+ L I LD ++ Sbjct: 68 AMLAGKPRFGSDLDE----LREALTGWTVVAHNAPFEKGFLPKLLGPIRAPVLDSCELLH 123 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKH 158 L HP S + L ++ + G + RS H Sbjct: 124 YL------HPELSSHSLEAMMRWAG--LKPRSTH 149 >gi|290961805|ref|YP_003492987.1| exonuclease [Streptomyces scabiei 87.22] gi|260651331|emb|CBG74453.1| putative exonuclease [Streptomyces scabiei 87.22] Length = 233 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 15/172 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ AV + D T +L G A +HG+TDE L Sbjct: 3 AFDTETTGVDVETDRIVS-AAVVVQDAPGTRPRVTRWLVNPGVPVPAGATAVHGLTDERL 61 Query: 71 -KDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLD------P 120 +D + + E EQ + NA FD+ ++ EL+R LD P Sbjct: 62 QRDGRWPAPVMEEIARALAEQAVRGRPLVVMNAPFDLTLLDRELRRHRASSLDRWFEATP 121 Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 R++D + + ++ R L LC Y + + H A D+ DV Sbjct: 122 LRVLDPRVLDKHLDRYRKGRRTLTDLCAHYEVVLD--GAHDAGADAQAAMDV 171 >gi|260440770|ref|ZP_05794586.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI2] Length = 255 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ +L GI Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I + + +AHN++FD F+ E R P+ + Sbjct: 75 SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 131 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173 >gi|240125521|ref|ZP_04738407.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679] Length = 255 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ +L GI Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I + + +AHN++FD F+ E R P+ + Sbjct: 75 SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 131 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173 >gi|269798688|ref|YP_003312588.1| UvrD/REP helicase [Veillonella parvula DSM 2008] gi|269095317|gb|ACZ25308.1| UvrD/REP helicase [Veillonella parvula DSM 2008] Length = 862 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+E+TG D+ DRII+I A+ + + + TF+ F+ P E ++HG +D + Sbjct: 495 VVYDVESTGTDTAQDRIIQIAAIRIDEDGQVLETFERFINPGVPVGQSE--EVHGFSDAY 552 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L++ +I + + F+ +NA + HN +DV EL R N + I DTL I Sbjct: 553 LQEHGEEPAIVLQAFKEFS-KNAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLDI 611 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 RR +P+ N L L ++ I H H A+ D Sbjct: 612 YRRFYPNLPNHKLGFLASKF--PIHHEPTHNAMDD 644 >gi|89099885|ref|ZP_01172757.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911] gi|89085443|gb|EAR64572.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911] Length = 934 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 9/160 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + +V D+ETTG +K D+II+ AV +++ K + L P G++ +L G+ Sbjct: 4 KYVVVDLETTGNSAKKGDKIIQFAAV-VMEGGKIIDQYSSLLNP-GKEIPAFIEELTGLN 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + ++A ++AHN FD+ F+ EL P +IDT Sbjct: 62 DSMVSDAPVFAEIAPKVMELL--EDAYFVAHNVLFDLSFLQEELLDAGF-PGFYGPVIDT 118 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSH 165 + +AR P S + L+ L + GI H H A D++ Sbjct: 119 VELARTVLPCSDSYKLSDLSAKEGIM--HDRPHQADSDAY 156 >gi|239998744|ref|ZP_04718668.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae 35/02] gi|240014337|ref|ZP_04721250.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI18] gi|240080968|ref|ZP_04725511.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA19] gi|240121900|ref|ZP_04734862.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID24-1] gi|240123269|ref|ZP_04736225.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID332] gi|268594593|ref|ZP_06128760.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268597081|ref|ZP_06131248.1| DNA polymerase III [Neisseria gonorrhoeae FA19] gi|268547982|gb|EEZ43400.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268550869|gb|EEZ45888.1| DNA polymerase III [Neisseria gonorrhoeae FA19] Length = 255 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ +L GI Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I + + +AHN++FD F+ E R P+ + Sbjct: 75 SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 131 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173 >gi|240117716|ref|ZP_04731778.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID1] Length = 255 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + DR+ E+ V+ + V N +K P+ +L GI Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLV----NPQKPIPKFVAELTGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I + + +AHN++FD F+ E R P+ + Sbjct: 75 SDGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 131 SVQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173 >gi|229157184|ref|ZP_04285264.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342] gi|228626248|gb|EEK82995.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342] Length = 315 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 88/167 (52%), Gaps = 13/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P ++ P+ + L GIT+ Sbjct: 11 VVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNP--ERSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D + + F F + +AHNA FD+ F+ + + ++ P +++IDT+ Sbjct: 68 RVSDARTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLSL-PEPKNKVIDTVF 124 Query: 129 IARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ KH + + L +L + GI + S H A D + VY K Sbjct: 125 LAKKYMKH-APNHKLETLKRMLGIRL---SSHNAFDDCITCAAVYQK 167 >gi|24379729|ref|NP_721684.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus mutans UA159] gi|24377689|gb|AAN58990.1|AE014965_11 putative ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit (3'-5' exonuclease) [Streptococcus mutans UA159] Length = 820 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 90/175 (51%), Gaps = 10/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K + V D+E TG S + II++G V +++ + +T+ + P+ + S + Sbjct: 1 MTEKKTRKYAVVDLEATG-ASHSASIIQVGIV-IIENEQIIQTYTTDVNPH-KPLSKAII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GITD L+ P FS + ++ + + + ++AHN KFD + L + L P Sbjct: 58 RLTGITDAQLQQAPDFSEVAADIYHLID--DCVFVAHNVKFDANLLAEHLFLEGFELLTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +L + I +S H A+ D+ +++++K+ Sbjct: 116 R--VDTVELAQVFYPTFEKYSLGNLTELLKIDLS--DAHTAIADAKATAELFLKL 166 >gi|290580273|ref|YP_003484665.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025] gi|254997172|dbj|BAH87773.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025] Length = 842 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 90/175 (51%), Gaps = 10/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K + V D+E TG S + II++G V +++ + +T+ + P+ + S + Sbjct: 23 MTEKKTRKYAVVDLEATG-ASHSASIIQVGIV-IIENEQIIQTYTTDVNPH-KPLSKAII 79 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GITD L+ P FS + ++ + + + ++AHN KFD + L + L P Sbjct: 80 RLTGITDAQLQQAPDFSEVAADIYHLID--DCVFVAHNVKFDANLLAEHLFLEGFELLTP 137 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +L + I +S H A+ D+ +++++K+ Sbjct: 138 R--VDTVELAQVFYPTFEKYSLGNLTELLKIDLS--DAHTAIADAKATAELFLKL 188 >gi|121997525|ref|YP_001002312.1| ribonuclease T [Halorhodospira halophila SL1] gi|121588930|gb|ABM61510.1| RNAse T [Halorhodospira halophila SL1] Length = 226 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLC---P-NGRKNSPEALKLH 63 +V D+ET GL ++ D +++I AV L T R + + C P G + P+AL+L+ Sbjct: 34 VVVDVETGGLQAETDALLQIAAVILRAEEGTGRLYPAETHTCHVQPFEGARIDPKALELN 93 Query: 64 GITDEF-----LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN- 114 GI E + ++ + +F+ A + HNA FD+ F+NA + R Sbjct: 94 GIDPEHPLRMAVPERDALGKMFNPVRQELRNTGCNRAVLVGHNAFFDLAFLNAAVTRTGF 153 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++ + + L K GI + H A+ D+ ++++ Sbjct: 154 KRNPFHPFSSFDTATLGGLAY--GQTVLAKAVKAAGIEWDAKEAHSAIYDAEKTAELFCA 211 Query: 174 MM 175 ++ Sbjct: 212 IV 213 >gi|229155207|ref|ZP_04283319.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 4342] gi|228628334|gb|EEK85049.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 4342] Length = 934 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L KR+ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKRH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|314055097|ref|YP_004063435.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus tauri virus 2] gi|313574988|emb|CBI70001.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus tauri virus 2] Length = 447 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 18/143 (12%) Query: 7 MRKIVFDIETTGL---------------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 M I FD ET+GL + R + + A + +TF + PN Sbjct: 5 MNYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIRPN 64 Query: 52 GRKNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 G + E++ +HGI++E L + F +F +F +F + +AHNA+FD + +E+ Sbjct: 65 GFQIGEESIAIHGISNEKALSEGRPFPDVFKDFMEFIGPRTKTLVAHNAQFDTSVLQSEM 124 Query: 111 QR--INKDPLDPSRIIDTLSIAR 131 R I + +D I TL + R Sbjct: 125 LRHGIPLEQIDDLVIRCTLEMYR 147 >gi|307327522|ref|ZP_07606708.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] gi|306886921|gb|EFN17921.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] Length = 274 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 15/175 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHGIT-DE 68 FD ETTGLD DRI++ L+ ++ R + +L G EA K+HGIT D Sbjct: 15 FDTETTGLDVFKDRIVQAA---LVGQDRSGREVFREEWLINPGILIPREATKIHGITSDR 71 Query: 69 FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122 ++D + + + + NA +D+ ++AE QR + PL R Sbjct: 72 AMEDGQDPAEAIEQITGLLEKALRAGCALVIQNAPYDLALLDAEAQRHSVVPLAERRPVA 131 Query: 123 -IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++D + +A+ R+ L +L R+G+T + H A D+ V K+M+ Sbjct: 132 PVLDPVMLAKVAKVEGRHSLAALSARFGVT--NPRAHTAYADAVTTLAVLRKLMM 184 >gi|310767562|gb|ADP12512.1| ribonuclease T [Erwinia sp. Ejp617] Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+K + ++EI AV L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLGKDDTLHFHVEPFAGSVLLPEALTFNG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF + A +AHNA FD+ F+NA +R + Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C G+ H AL D+ +D++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLAKACHAAGMAFDSAQAHSALYDTLQTADLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|309789846|ref|ZP_07684425.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] gi|308228150|gb|EFO81799.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] Length = 230 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 22/179 (12%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68 V DIET+GL+ K D ++ IG VE+ + NR + + P G + ++++HGIT Sbjct: 36 VLDIETSGLNHKRDALLAIGLVEIEEGRIHLNRHWYTLVRPPEGLEVDASSIRIHGITRA 95 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127 L+D P + E + H A+ DV F+N ++ R + P IIDT Sbjct: 96 ELEDAPLADVVLPEL--LARLAGRVMVVHVAQVDVSFLNQAMRTRWGAKLVGP--IIDTA 151 Query: 128 SIARRKH-------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 IA H P L +L R+G + +H AL D+ + +++ Sbjct: 152 RIAMSLHETAKILGSVQPDMPMPAIQLRALATRFG--LPSYGEHNALNDALTTAQLFLA 208 >gi|308177924|ref|YP_003917330.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] gi|307745387|emb|CBT76359.1| putative DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] Length = 227 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 23/219 (10%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K I FD+ETTG+D+ RI+ +V LLD + +L G + A Sbjct: 1 MTEWHKGLAIGFDLETTGVDTNTARIV-TASVVLLDAEGNVVNNREWLVDPGVEIPEAAA 59 Query: 61 KLHGITDEFLKDK--PSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKD 116 +HGI+ E + + P+ S+ E + F + A +A NA +D + +E R + + Sbjct: 60 AVHGISTEKARAEGAPAKQSV-EEILNLLKFASEQAPIVAFNASYDFSVLYSEAVRYDLE 118 Query: 117 PLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK- 173 P P +ID I ++ + + L + C+ YG+ + + H +L D+ +V + Sbjct: 119 PFFPGNVIDPFIIDKQVDRFRKGKRTLAAACEFYGVVLEN--AHTSLADAVACVEVARQL 176 Query: 174 -----------MMVGGSQINFGFKTNEDRFFKEEKKTVP 201 M++ G QI + K + F +KT P Sbjct: 177 GERYPQLQVDPMVLHGWQIGWA-KEQAESFQAYLRKTKP 214 >gi|15606258|ref|NP_213636.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5] gi|6014995|sp|O67074|DPO3E_AQUAE RecName: Full=DNA polymerase III subunit epsilon gi|2983450|gb|AAC07031.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5] Length = 202 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 12/169 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V D+E TG D + +I++ AV ++ F + P PE + KL GIT+ Sbjct: 20 VVIDLEATGFDVEKSEVIDLAAVR-VEGGIITEKFSTLVYPG--YFIPERIKKLTGITNA 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTL 127 L +P+ + EF +F + + H + D+ FIN ++ K +PS + TL Sbjct: 77 MLVGQPTIEEVLPEFLEFVGDNIV--VGHFVEQDIKFINKYTKQYRGKKFRNPS--LCTL 132 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR+ P + L + + +G + H AL D+ L ++++IK++ Sbjct: 133 KLARKVFPGLKKYSLKEIAENFGFETN--GVHRALKDATLTAEIFIKIL 179 >gi|296102681|ref|YP_003612827.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057140|gb|ADF61878.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 216 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 22/195 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEEGWLTPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF E N A +AHNA FD F A +R + Sbjct: 80 IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCSRAIMVAHNATFDHSFTMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C GI H AL D+ ++++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACITAGIEFDGTQAHSALYDTERTAELFCEI 197 Query: 175 M-----VGGSQINFG 184 + +GG + G Sbjct: 198 VNRWKRLGGWPLAMG 212 >gi|320011855|gb|ADW06705.1| Exonuclease RNase T and DNA polymerase III [Streptomyces flavogriseus ATCC 33331] Length = 241 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 21/158 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ A+ + D + +L G P A ++HG+TD+ L Sbjct: 11 AFDTETTGVDVEEDRIVS-AALVVQDAAGGRLRVTRWLVNPGIPVPPGATEIHGLTDDHL 69 Query: 71 KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR---------INKDP 117 + + + + E EQ A + NA FD+ ++ EL+R + K P Sbjct: 70 QRNGRWPAPVVEEIARSLAEQCATGRPLVVMNAPFDLTLLDRELRRHRASSLAGYLGKKP 129 Query: 118 ---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152 LDP R++D RK R L LC+ YG+T+ Sbjct: 130 LCVLDP-RVLDKHLDRYRK---GRRTLTDLCELYGVTL 163 >gi|239616933|ref|YP_002940255.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1] gi|239505764|gb|ACR79251.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1] Length = 180 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 13/180 (7%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL-H 63 M +V D ETTG K +IEI V + D+ +F + P +++ P ++ + Sbjct: 1 MEFVVIDTETTGSSPHKGAELIEIAGVVVRDWEIIYEESFNELIKP--KRHVPISITMIT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + L+DK + F+DF ++ + NA FD+ F++ ++I L P+ Sbjct: 59 GINNLMLEDKLPIEIVLPRFYDFVRDRV--LVIQNAPFDLSFLDYFGKKIGIGEL-PNPF 115 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQI 181 +DT+S++R R++L+ + R GI R H AL D+ + +IKM M+G +I Sbjct: 116 VDTISLSRSLF-RGRHNLDIILARLGIFCEDR--HRALGDAVATAKAFIKMVKMIGVEEI 172 >gi|302541826|ref|ZP_07294168.1| putative DNA polymerase III epsilon subunit [Streptomyces hygroscopicus ATCC 53653] gi|302459444|gb|EFL22537.1| putative DNA polymerase III epsilon subunit [Streptomyces himastatinicus ATCC 53653] Length = 239 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 20/169 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTG D + RI+ VE+ R +L +A+ +HGIT+E Sbjct: 9 IGFDLETTGTDPRTARIVTAAVVEVRGGEPIGR--HEWLAAPEVPIPDDAVAVHGITNER 66 Query: 70 LKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAEL---------QRINKDP 117 + E D A +A+NA FD+ + AEL +R+ P Sbjct: 67 AAAGRPIREVADEIADVLVAHWRAGAPVVAYNAAFDLSLLAAELDRHGLRSLGERLGGAP 126 Query: 118 LDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 P ++D +I R ++ + L ++C YG ++H H A D+ Sbjct: 127 TGP--VVDPYTIDRAVDRYRKGKRTLEAVCGEYG--VAHERAHEAGADA 171 >gi|222151350|ref|YP_002560506.1| hypothetical protein MCCL_1103 [Macrococcus caseolyticus JCSC5402] gi|222120475|dbj|BAH17810.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 850 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 10/165 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF- 69 V DIETTG + +D II++G + ++ K T+ F+ N P ++ D F Sbjct: 7 VVDIETTGNNLDSDEIIQVG-IAIVQNKKIIETYDTFIACNNE--IPAFIQSLTKIDAFD 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P+FS + S + ++AHN +FD+ F+ P IIDT+ Sbjct: 64 LVDAPNFSHVASHIIKLLD--GCVFVAHNVQFDLRFLQKYFSEAGH-KFQPRYIIDTVDW 120 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +PS R L S+ GI +S S H A+ D+ ++V+I+ Sbjct: 121 FKIVYPSLERYQLKSIADDLGIELS--SAHRAIDDAVATAEVFIE 163 >gi|221195007|ref|ZP_03568063.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium rimae ATCC 49626] gi|221184910|gb|EEE17301.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium rimae ATCC 49626] Length = 251 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 5/100 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD + D II++ ++ F+ +CP RK P A +++GIT + Sbjct: 24 LCIDTETTGLDPRKDEIIQLSMID----GHGKSIFESLICPPTRKRWPNAQEINGITPKM 79 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 +K KP + + + N + + +N FD+ + AE Sbjct: 80 VKGKPELEEVADQVQEAINAADL-IVGYNLPFDISMMEAE 118 >gi|170019811|ref|YP_001724765.1| exodeoxyribonuclease X [Escherichia coli ATCC 8739] gi|169754739|gb|ACA77438.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli ATCC 8739] Length = 220 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVKPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|306841731|ref|ZP_07474417.1| DNA polymerase III, epsilon chain [Brucella sp. BO2] gi|306288136|gb|EFM59523.1| DNA polymerase III, epsilon chain [Brucella sp. BO2] Length = 193 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 6/150 (4%) Query: 24 DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83 DRII +GAV++ ++ + P + +SP+A +HG + + + F + + Sbjct: 4 DRIITLGAVKIEGDELLTQSLYLIFDPR-KDSSPQAEAIHGFDNWMTRYQDLFHELAAPI 62 Query: 84 WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNS 143 +F+ + E +AHNA+FD+ +I E ++ D LD + T+ ARR L+ Sbjct: 63 RKWFSWAD-EVVAHNAQFDIHYIQREFRKAEVDMLD-QPVYCTMEGARRLWRGDPAKLDH 120 Query: 144 LCKRYGIT-ISHRSKHGALLDSHLLSDVYI 172 + G+ HR HGAL D++L + +Y+ Sbjct: 121 CLAKIGLARTGHR--HGALEDAYLTAGLYL 148 >gi|298252829|ref|ZP_06976623.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella vaginalis 5-1] gi|297533193|gb|EFH72077.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella vaginalis 5-1] Length = 337 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 20/174 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL------CPNGRKNS---PEAL 60 +V D ETTGL+SK D+IIEIGAV+ +D FQ + N KN+ E + Sbjct: 157 VVIDCETTGLNSKVDKIIEIGAVKFID--GKIEEFQKLININCDSVSNFNKNNFILNEII 214 Query: 61 KLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---D 116 +L GIT L+ EF DF + + +N +FD+ F+N+ L +++ Sbjct: 215 ELTGITSSMLESYGVRLDLALKEFIDFV--EKLPVLGYNVQFDMSFLNSALSSLDERFDH 272 Query: 117 PLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLL 167 L ++I D +++ +N L ++ Y I ++ HR+ A L +HL+ Sbjct: 273 SLSINKIFDISRFVKKEKKFLKNYQLKTVLHEYNIAESVPHRALLDARLTAHLV 326 >gi|251789330|ref|YP_003004051.1| ribonuclease T [Dickeya zeae Ech1591] gi|247537951|gb|ACT06572.1| ribonuclease T [Dickeya zeae Ech1591] Length = 226 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 22/201 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L +D S + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDATLHFHIEPFEGAILRPEALAFNG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + IF EQ+ A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEYEALHEIFKSVRKGIKEQDCNRAIIVAHNATFDHSFLMAAAERCGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C I H AL D+ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAADIPFDASQAHSALYDTERTAQLFCEL 197 Query: 175 M-----VGGSQINFGFKTNED 190 + +GG + G TN + Sbjct: 198 VNRWKRMGGWPLASGIDTNTE 218 >gi|210634765|ref|ZP_03298293.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279] gi|210158705|gb|EEA89676.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279] Length = 975 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 10/149 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL + + +IEI A L R F F+ P+ + E +L IT+ Sbjct: 48 VVLDTETTGLSHRENELIEIAAARLRGREVVER-FDTFIKPHALIPA-EITELTSITNAD 105 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + PS + DF A IAHNA FD GFI A ++ ID+L++ Sbjct: 106 VAHAPSAEEAVARLADFVG--GAPVIAHNAAFDRGFIEA----VSGGAEVTDIWIDSLAL 159 Query: 130 ARRKHPS-SRNDLNSLCKRYGIT-ISHRS 156 +R P S + L S+ + +G + +SHR+ Sbjct: 160 SRIALPRLSSHKLASMAELFGCSGVSHRA 188 >gi|152992669|ref|YP_001358390.1| exonuclease [Sulfurovum sp. NBC37-1] gi|151424530|dbj|BAF72033.1| exonuclease [Sulfurovum sp. NBC37-1] Length = 244 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 8/105 (7%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 + ++FD ETTG + + DRII+IGA ++ +SK +VF LC S EA+++H I Sbjct: 3 KYVLFDTETTG-NQEADRIIQIGA--MIVHSKDE--IEVFDELCSTQVPISIEAMEVHNI 57 Query: 66 TDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 T + + KP++S + F++ N IAHN FD+G + E Sbjct: 58 TPDVIAGKPTYSETAFAKRVQELNTTENYLIAHNISFDLGMLEKE 102 >gi|313894242|ref|ZP_07827807.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412] gi|313441066|gb|EFR59493.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412] Length = 862 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+E+TG D+ DRII+I A+ + + + TF+ F+ P E ++HG +D + Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLETFERFINPGVPVGQSE--EVHGFSDAY 552 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L++ +I + + F+ +NA + HN +DV EL R N + I DTL I Sbjct: 553 LQEHGEEPAIVLQAFKEFS-KNAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLDI 611 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 RR +P+ N L L + I H H A+ D Sbjct: 612 YRRFYPNLPNHKLGFLASEF--PIHHEPTHNAMDD 644 >gi|110833585|ref|YP_692444.1| ribonuclease T [Alcanivorax borkumensis SK2] gi|110646696|emb|CAL16172.1| Ribonuclease T [Alcanivorax borkumensis SK2] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 19/190 (10%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRT-----FQVFLCPNGRKN 55 +R +V D+ET G +S+ D ++EI AV + +D R F V P G Sbjct: 16 LRFRGFLPVVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRIQFHVDPFP-GANL 74 Query: 56 SPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFIN 107 AL GI + ++ + +F + A + HN+ FD GF+N Sbjct: 75 EQAALDFTGIDPNNPLRGAVPEETALKGVFDPVRKAIKQHACSRAVLVGHNSFFDQGFLN 134 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A R I ++P P DT ++A + + L C+ GI S R H AL D+ Sbjct: 135 AATDRTDIKRNPFHPFSSFDTATLAGLVY--GQTVLAKACEAAGIRFSQREAHSALYDAT 192 Query: 166 LLSDVYIKMM 175 ++++ M+ Sbjct: 193 RTAELFCSMV 202 >gi|158313649|ref|YP_001506157.1| hypothetical protein Franean1_1813 [Frankia sp. EAN1pec] gi|158109054|gb|ABW11251.1| DNA polymerase III, epsilon subunit [Frankia sp. EAN1pec] Length = 603 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 80/197 (40%), Gaps = 38/197 (19%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV---------ELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 +V D+ETTG I EIGAV E+ + + F+ Sbjct: 30 VVVDLETTGGSPATSEITEIGAVRVRGGQILGEMSSLVRPSAPIPAFIS----------- 78 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GIT + P + F +F + A +AHNA FD+GF+ A P Sbjct: 79 VLTGITGAMVATAPGIGEVVPTFLEF--ARGAVLVAHNAPFDLGFLRAAATACGY-PAPA 135 Query: 121 SRIIDTLSIARRKHPSSRND-----LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ IARR SR++ L+SL +G + + H AL D+ DV + Sbjct: 136 WEHLDTVRIARRV--ISRDETRDCRLSSLAALFG--SATQPNHRALADARATVDVLHGLF 191 Query: 176 --VGGSQINFGFKTNED 190 +G N G T ED Sbjct: 192 ERLG----NLGVTTIED 204 >gi|220921028|ref|YP_002496329.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] gi|219945634|gb|ACL56026.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] Length = 222 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 10/172 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + D+E TGL ++ DRI+ GAV LL S + P R + P A + Sbjct: 19 RLLAIDVEATGLAAR-DRIVSFGAVALDTASLLGPSPAPTCHHLIFDPQ-RVSHPRAEAV 76 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HG D L+ + + + + + +AHNA FD G + E + +R Sbjct: 77 HGYDDWLLRHQDPAALHLNAIAALLGQADLI-VAHNAAFDFGLLQREFAAAGRP-ALAAR 134 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 TL RR+ + L+++C+R + + +HGAL D+ L VY+ + Sbjct: 135 TYCTLEAYRRRGEAGPATLDAVCRRVRLQRTG-ERHGALEDAWLALRVYLWL 185 >gi|24374295|ref|NP_718338.1| ribonuclease T [Shewanella oneidensis MR-1] gi|54036332|sp|Q8EDJ2|RNT_SHEON RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|24348836|gb|AAN55782.1|AE015715_1 ribonuclease T [Shewanella oneidensis MR-1] Length = 222 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S+ D ++EI AV LL ++T + P G PEAL + Sbjct: 20 VVIDVETAGFNSQTDALLEI-AVTLLKMDDEGLLGIDKTLHFHIEPFEGANLEPEALAFN 78 Query: 64 GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113 GI T+ + +K +F IF + +AHNA FD GF++ ++R + Sbjct: 79 GIDPTNPLRGAVSEKDAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++A L C GI ++ H AL D+ ++++ Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCY 196 Query: 174 MM 175 ++ Sbjct: 197 IV 198 >gi|115452527|ref|NP_001049864.1| Os03g0301400 [Oryza sativa Japonica Group] gi|108707691|gb|ABF95486.1| exonuclease family protein, expressed [Oryza sativa Japonica Group] gi|113548335|dbj|BAF11778.1| Os03g0301400 [Oryza sativa Japonica Group] gi|215678888|dbj|BAG95325.1| unnamed protein product [Oryza sativa Japonica Group] Length = 313 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 81/179 (45%), Gaps = 21/179 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGITDE 68 +VFDIETTG + +RIIE +L+ N T Q + P KN+ +HGI+ Sbjct: 114 LVFDIETTGFSRRYERIIEFAVRDLM--GGKNSTIQTLINPEREIKNA----YVHGISSS 167 Query: 69 FL--KDKPSFSSIFSEFWDF-FNEQNAE----WIAHNAK-FDVGFINAELQRINKDPLDP 120 + D P F + + Q A+ W+AHN + FDV F+ E QR + Sbjct: 168 MVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGD 227 Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DTL IAR+ S L S L + Y I ++ S H A+ D L V K+ Sbjct: 228 WLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAG-SAHRAMQDVITLCYVLQKL 285 >gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] Length = 334 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 10/162 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL ++ DRI+ L + + P + P + +HG+T + L Sbjct: 33 VVDVETTGL-AREDRIVSAAVYRLDAQGNVEDHWYTLVNP---QRDPGPVWIHGLTSDML 88 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P F I EF ++ +AHNA FD I E R + R+ T++++ Sbjct: 89 QDAPLFKDIAGEFAGRLADRVL--VAHNAIFDWQMIAREYARAEETAPVRQRLC-TIALS 145 Query: 131 RRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + P + L SL +G+ + R+ H AL D+ +L++ + Sbjct: 146 KELNLPLPNHKLESLAAHFGV-VQQRAHH-ALDDARVLAEAF 185 >gi|120555417|ref|YP_959768.1| ribonuclease T [Marinobacter aquaeolei VT8] gi|166228568|sp|A1U3L2|RNT_MARAV RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|120325266|gb|ABM19581.1| RNAse T [Marinobacter aquaeolei VT8] Length = 221 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI AV L + + T + P G AL G Sbjct: 21 VVVDVETAGFNPERDALLEIAAVMLTMDEDGWLRRGETHVQQIDPFEGANLEQSALDFTG 80 Query: 65 ITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I E + ++ S IFS E + A + HNA FD F+ A R I Sbjct: 81 IDPWNPEREAVPEREGLSEIFSPIRKAVKEHDCKRAVLVGHNATFDHNFVFAAALRADIK 140 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + L CK GI S++ H A D+ +D++ + Sbjct: 141 RNPFHPFSTFDTATLAGLAY--GHTVLAQACKLAGIPFSNKEAHSAAYDAEKTADLFCGI 198 Query: 175 M 175 + Sbjct: 199 V 199 >gi|34541463|ref|NP_905942.1| exonuclease [Porphyromonas gingivalis W83] gi|34397780|gb|AAQ66841.1| exonuclease [Porphyromonas gingivalis W83] Length = 259 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 24/171 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTG+D DRI+EI ++++ D S+ +T ++ R PE+ +HGI DE Sbjct: 10 IFFDLETTGVDLVRDRIVEISILKVMPDGSEECKTRRI---NPERPIPPESTAIHGIRDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIA-------HNAKFDVGFINAELQRINKD-PLDP 120 +KD P F S+ A+WI ++ +FDV + E R D L Sbjct: 67 DVKDCPPFRSVAKSL--------AQWIEGCDLAGFNSTRFDVPMLVEEFLRAGVDIDLRH 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++ID +I + P + R+ + + H A D+ DV+ Sbjct: 119 RKLIDVQTIFHKMEPRTL----EAATRFYCNRTLENAHSAEADTRATYDVF 165 >gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC 10712] Length = 330 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 10/186 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRI+ L + + P + P + +HG+T + L Sbjct: 23 VVDVETTGL-ARDDRIVSAAVYRLDAQGNVEDHWYTLVNP---ERDPGPVWIHGLTTDVL 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P F I +EF + + +AHNA FD I E R R+ T+++A Sbjct: 79 AGAPLFPEIAAEFAARLDGRVL--VAHNAMFDWQMIAREYARAESAAPVRQRLC-TIALA 135 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + P + L SL +G+ + H AL D+ +L++ + + ++ N E Sbjct: 136 KELSLPLPNHKLESLAAHFGVV--QQRAHNALDDARVLAEAFRPSLHAAAERNVRLPLLE 193 Query: 190 DRFFKE 195 R E Sbjct: 194 CRPLTE 199 >gi|325843612|ref|ZP_08168008.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sp. HGF1] gi|325489298|gb|EGC91675.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sp. HGF1] Length = 1528 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I N +V+D+ETTG + D IIEI AV++ + + + F F P+ RK S + ++ Sbjct: 426 IPLNDATYVVYDVETTGFSTNYDVIIEIAAVKIKNGTIIDE-FSDFANPH-RKLSLKTIE 483 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L I + + P + F ++ ++ +AHNA FD+G + +R N D + Sbjct: 484 LTHILQSDVDNAPELEDVMKRFKEW--SEDCILVAHNAAFDMGHLEQTYKRFNLGVCD-N 540 Query: 122 RIIDTLSIAR 131 ++DTL++AR Sbjct: 541 PVLDTLALAR 550 >gi|118616866|ref|YP_905198.1| DNA polymerase [Mycobacterium ulcerans Agy99] gi|118568976|gb|ABL03727.1| DNA polymerase [Mycobacterium ulcerans Agy99] Length = 500 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/252 (23%), Positives = 110/252 (43%), Gaps = 26/252 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTG ++ DR++E+G V L + + P+ + E HGI + Sbjct: 100 VLDFETTGFAAEYDRVVEVGLVLLSAEGDIEDEWSTLINPHRDVGATER---HGIRARDV 156 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTLS 128 P+F +I + + ++AHN FD F+ AEL+R PLD + + T+ Sbjct: 157 LGAPAFEAIIPRL--LRDLRGRVFVAHNVNFDQRFLLAELRRAGV-PLDNPWLTGLCTMR 213 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV--GGSQINFGFK 186 A R P++ L C G+ ++ H AL D+ + + +K ++ GS + + Sbjct: 214 WAGRLLPAASRKLPDCCDAAGVFLT--DAHRALADARATASL-LKYLIDHCGSPPPWAKE 270 Query: 187 TNEDRFFKEEKKTVPNISLLKR-------DKP---LFTRITKEELDEHDKTIQT---LGK 233 + F+ + P + L+ R +P RI E D +++ + + Sbjct: 271 IDGAEDFEWPQVAGPEVRLVTRAAWGAAPPRPPAGWLDRIVARMPHEDDPRVESYLEILE 330 Query: 234 NAIWDRYISSNQ 245 +A+ D Y+S ++ Sbjct: 331 SALLDCYLSCHE 342 >gi|117920981|ref|YP_870173.1| ribonuclease T [Shewanella sp. ANA-3] gi|166200021|sp|A0KY98|RNT_SHESA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|117613313|gb|ABK48767.1| RNAse T [Shewanella sp. ANA-3] Length = 222 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S+ D ++EI AV LL ++T + P G PEAL + Sbjct: 20 VVIDVETAGFNSQTDALLEI-AVTLLKMDDEGLLGIDKTLHFNIEPFEGANLEPEALAFN 78 Query: 64 GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113 GI T+ + +K +F IF + +AHNA FD GF++ ++R + Sbjct: 79 GIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++A L C GI ++ H AL D+ ++++ Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCH 196 Query: 174 MM 175 ++ Sbjct: 197 IV 198 >gi|311279484|ref|YP_003941715.1| ribonuclease T [Enterobacter cloacae SCF1] gi|308748679|gb|ADO48431.1| ribonuclease T [Enterobacter cloacae SCF1] Length = 217 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++E+ A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLMPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF +QN A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKAVRKGIKDQNCNRAIMVAHNATFDHSFVMAAAERAGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACIAAGMAFDGAQAHSALYDTEQTAQLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|308234672|ref|ZP_07665409.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis ATCC 14018] gi|311114561|ref|YP_003985782.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Gardnerella vaginalis ATCC 14019] gi|310946055|gb|ADP38759.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Gardnerella vaginalis ATCC 14019] Length = 359 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 20/188 (10%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL------CPNGRK 54 I K +V D ETTGL+SK D+IIEIGAV+ +D FQ + N K Sbjct: 170 FIGKTSKNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKI--EEFQKLININCDSVSNFNK 227 Query: 55 NS---PEALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 N+ E ++L GIT L+ EF DF + + +N FD+GF N+ L Sbjct: 228 NNFIPNEIIELTGITSNMLESYGVGLDLALREFIDFVGK--LPLLGYNVSFDIGFFNSAL 285 Query: 111 QRINK---DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHL 166 +++ +++ID + +N L ++ Y IS H ALLD+ L Sbjct: 286 FSLDEKLSSAFSVNKVIDISRFVKHDRRFLKNYQLKTVLHEYN--ISESVPHRALLDARL 343 Query: 167 LSDVYIKM 174 + + + + Sbjct: 344 TARLVLNL 351 >gi|157364228|ref|YP_001470995.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO] gi|157314832|gb|ABV33931.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO] Length = 188 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 14/175 (8%) Query: 12 FDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 D ETTG+D N DRI+E+ V + R+ L N + P + K+H IT+E Sbjct: 11 MDTETTGIDPMNGDRIVEVAIVPVYKGRILYRSIYHTLV-NPKIRIPATIEKIHRITNED 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128 +++ P+ +F + F + + I H A+FD+ FI+ + I P PS IDT Sbjct: 70 IENAPTIEQVFGQMRSFM--RRSIMIFHRAEFDLTFIDISAKEIGIFP--PSIDYIDTRE 125 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQI 181 I+ + L+ L +R+G + H AL D+ + +++KM + GSQI Sbjct: 126 ISEIIF-GEKKALSWLAERFGF---EKPNHRALTDAITTAKLFLKMTRKLAGSQI 176 >gi|148827473|ref|YP_001292226.1| ribonuclease T [Haemophilus influenzae PittGG] gi|166228566|sp|A5UGD7|RNT_HAEIG RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|148718715|gb|ABQ99842.1| ribonuclease T [Haemophilus influenzae PittGG] Length = 229 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 20/190 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L +D Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELNAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R + ++P P + DT S+A + L C+ I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMM 175 + ++ M+ Sbjct: 192 RTAKLFCYMV 201 >gi|327313528|ref|YP_004328965.1| exonuclease [Prevotella denticola F0289] gi|326944167|gb|AEA20052.1| exonuclease [Prevotella denticola F0289] Length = 284 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGLD NDRII+I +++L K R +F+ P + E +L GI+ + Sbjct: 10 VVFDLETTGLDLVNDRIIQISFIKVLPDGKEERE-NIFINPE-KPIPTEVTQLTGISHKD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127 + D P+F E D F ++ N+ +FDV + E R D SR+ID Sbjct: 68 VADAPTFRQKAKELADRF--AGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFSKSRLIDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 +I H R +L + K Y Sbjct: 126 NIY---HKMERRNLAAAYKFY 143 >gi|15607062|ref|NP_214444.1| hypothetical protein aq_2108 [Aquifex aeolicus VF5] gi|2984321|gb|AAC07843.1| putative protein [Aquifex aeolicus VF5] Length = 210 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 89/172 (51%), Gaps = 16/172 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +VFD E T LD K +++ IGAVE+ L+ + +++ + + +A ++HGI Sbjct: 36 RFVVFDCEATELDVKKAKLLSIGAVEVKNLEIDLSKSFYEIL-----KSDEIKAAEIHGI 90 Query: 66 TDEFLKDKPSFSSIFSE-FWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 T E D + E +DF + + + + KFDV + + + P+ + Sbjct: 91 TRE---DVEKYGKEPKEVIYDFLKYIKGSVLVGYYVKFDVSLVEKYSIKYFQYPIINYK- 146 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +D S +R++ S R+ L+ L K G+ I R++H AL D+++ + +++K + Sbjct: 147 LDLFSFVKREYQSGRS-LDDLMKELGVEI--RARHNALEDAYITALLFLKYV 195 >gi|289435248|ref|YP_003465120.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171492|emb|CBH28036.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 928 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYATFLNPE--KPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +KD P F + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 SPKDVKDAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +AR +P L L +G + H H A D+ + +D Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHQADSDAEVTAD 161 >gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis BCW-1] Length = 324 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 10/162 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRI+ +L + + P + P + +HG+T + L Sbjct: 24 VVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTLVNP---QRDPGPVWIHGLTSDTL 79 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P FS I E + + +AHNA FD + E R R+ T++++ Sbjct: 80 ADAPLFSEIADELAQHLDGRVL--VAHNAVFDWSMLAREYARAGSAAPVRQRLC-TIALS 136 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + P + L SL YG+ + R+ H AL D+ +L++ + Sbjct: 137 KELGLPLPNHKLESLAAHYGV-VQERAHH-ALDDARVLAETF 176 >gi|190573537|ref|YP_001971382.1| ribonuclease T [Stenotrophomonas maltophilia K279a] gi|190011459|emb|CAQ45077.1| putative ribonuclease T [Stenotrophomonas maltophilia K279a] Length = 216 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 19/171 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ET G DS+ + ++EI AV + L Y + V + G + P++L++ Sbjct: 33 VVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHV-VPAEGLEIDPKSLEVT 91 Query: 64 GITDEFL-----KDKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI + ++K + IF+ + Q A + HNA FD+GF+NA + R Sbjct: 92 GIILDHPFRLAKEEKAALDHIFTPVRAAMKKYGCQRAILVGHNAHFDLGFVNAAVARTGH 151 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 ++P P + DT+++A + + L G+ H A+ D+ Sbjct: 152 KRNPFHPFSVFDTVTLAGIAY--GQTVLARAATAAGLGWDANEAHSAVYDT 200 >gi|119896359|ref|YP_931572.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] gi|119668772|emb|CAL92685.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 231 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 V D ETTG+ ++ R EI V + + +R +Q + N + P E L GIT+ Sbjct: 33 VIDFETTGMAPEHGARPTEIAVVLVRNGCVIDR-YQSLM--NAGVHVPYEIQALTGITNA 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + + ++ DF +AHNA FD F +AEL R+ + + + +L Sbjct: 90 MVRAAPPLAQVMAQAADFVGSH--ALVAHNAAFDRKFWDAELDRLGRR--READFVCSLL 145 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++RR P S N L +L + G+ S R H AL D+ + ++ ++ Sbjct: 146 LSRRVFPDSPNHKLGTLVRTLGLPASGRF-HRALADAEATAQLFARI 191 >gi|291544952|emb|CBL18061.1| DNA polymerase III, alpha subunit (gram-positive type) [Ruminococcus sp. 18P13] Length = 176 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 25/180 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA------LKLH 63 IVFD+ET + NDR+ IG + D F + PE KL Sbjct: 5 IVFDVETP--NRSNDRMSAIGISAIKDNKIVANYFSLV--------DPETHFDYFNTKLT 54 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI--AHNAKFDVGFINAELQRINKDPLDPS 121 GI + +K P+F+ E W + ++ I AHNA F++ + A L+ + Sbjct: 55 GIDADKVKGAPNFA----ELWKKIDPIMSKGILVAHNAVFNMSVLRACLRDYGISWKPTA 110 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + + + I RR P +++LN +C YGI + H H A DSH +++ ++ + G + Sbjct: 111 KYLCMVRIGRRVLPDMKHNLNVMCDHYGIALDH---HQADSDSHACAEILLRYIESGIDV 167 >gi|239917363|ref|YP_002956921.1| exonuclease, DNA polymerase III, epsilon subunit family [Micrococcus luteus NCTC 2665] gi|281414154|ref|ZP_06245896.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Micrococcus luteus NCTC 2665] gi|239838570|gb|ACS30367.1| exonuclease, DNA polymerase III, epsilon subunit family [Micrococcus luteus NCTC 2665] Length = 381 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 4/124 (3%) Query: 29 IGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87 +GAV + D +R + P G + P +++HGIT++ + D P F+ ++ E DF Sbjct: 31 VGAVRVRDGVMVDRAEWLIRPPVGFDRFDPRNVRIHGITEDRVLDAPRFAQVYDELADFV 90 Query: 88 NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR 147 AHNA FDVG I + L+ +D + + TL +ARR + L S + Sbjct: 91 GTDV--LAAHNAGFDVGVIESGLEVSGRD-VPGLEFVCTLVLARRVYDLPSYALPSAARE 147 Query: 148 YGIT 151 G T Sbjct: 148 AGFT 151 >gi|222624763|gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group] Length = 901 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 81/179 (45%), Gaps = 21/179 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGITDE 68 +VFDIETTG + +RIIE +L+ N T Q + P KN+ +HGI+ Sbjct: 702 LVFDIETTGFSRRYERIIEFAVRDLM--GGKNSTIQTLINPEREIKNA----YVHGISSS 755 Query: 69 FL--KDKPSFSSIFSEFWDF-FNEQNAE----WIAHNAK-FDVGFINAELQRINKDPLDP 120 + D P F + + Q A+ W+AHN + FDV F+ E QR + Sbjct: 756 MVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGD 815 Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DTL IAR+ S L S L + Y I ++ S H A+ D L V K+ Sbjct: 816 WLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAG-SAHRAMQDVITLCYVLQKL 873 >gi|297156451|gb|ADI06163.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis BCW-1] Length = 254 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 25/171 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ETTG D RI+ VE+ R + +L G +A+ +HGIT E+ Sbjct: 9 IGFDLETTGTDPGEARIVTAAVVEVRGGEPVGR--REWLADPGVTIPDDAVAVHGITTEW 66 Query: 70 --LKDKPS------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 + +PS + + W + A +A+NA FD+ + AEL+R L Sbjct: 67 AAAEGRPSREVADEIADVLVAHW----QAGAPVVAYNAAFDLSLLAAELRRHGLPSLGER 122 Query: 119 ----DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + ++D +I R ++ + L ++C YG+ H H A D Sbjct: 123 LGGAETGPVVDPYTIDRAVDRYRKGKRTLEAVCGEYGVV--HERAHDAGAD 171 >gi|293411964|ref|ZP_06654689.1| conserved hypothetical protein [Escherichia coli B354] gi|291469519|gb|EFF12008.1| conserved hypothetical protein [Escherichia coli B354] Length = 185 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 13 DIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFL 70 DIE+TGLD +IIEI A+ + + + N R+N P+A +HGI+ E L Sbjct: 9 DIESTGLDFLAGHKIIEI-AITRYELETQRHIDSLEMRFNPRRNIDPKAQAVHGISLEQL 67 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRIN-KDPLDPSRIIDT-L 127 +P S+ SE + +A WIAHN + FD+ FI E + P P +IDT L Sbjct: 68 AAEPLLSNHASEIGAYMGACSA-WIAHNGEAFDIPFIRHEFSGYGVRLPEVP--VIDTML 124 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 S R L L G H H AL D++L+ + K Sbjct: 125 SGLWATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQCFFK 170 >gi|154487175|ref|ZP_02028582.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis L2-32] gi|154085038|gb|EDN84083.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis L2-32] Length = 261 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 10/151 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 + DIETTGL ++ RIIE+GAV + K Q+ N + P + ++ GITD Sbjct: 100 VAVDIETTGL-GRDARIIELGAVRIRHGRKVASYSQLV---NPQIPIPAKVTQITGITDR 155 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127 +K KP+ +F+ F WI HN +FD+ I E QR+ D S DT+ Sbjct: 156 NVKGKPTIDKALPKFYAFCGRDT--WIGHNIRRFDIPVIAREAQRVGAGMPDVS-FYDTM 212 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSK 157 +++ P + + L + +GI + R + Sbjct: 213 ELSQALLPQLDHHRVVDLIRYFGIAKTERHR 243 >gi|145628675|ref|ZP_01784475.1| ribonuclease T [Haemophilus influenzae 22.1-21] gi|145638764|ref|ZP_01794373.1| ribonuclease T [Haemophilus influenzae PittII] gi|144979145|gb|EDJ88831.1| ribonuclease T [Haemophilus influenzae 22.1-21] gi|145272359|gb|EDK12267.1| ribonuclease T [Haemophilus influenzae PittII] gi|309750254|gb|ADO80238.1| Ribonuclease T [Haemophilus influenzae R2866] Length = 229 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 20/190 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L +D Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73 Query: 56 SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRRQKDADCQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R + ++P P + DT S+A + L C+ I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMM 175 + ++ M+ Sbjct: 192 RTAKLFCYMV 201 >gi|313632670|gb|EFR99647.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria seeligeri FSL N1-067] Length = 928 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYATFLNPE--KPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +KD P F + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 SPKDVKDAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +AR +P L L +G + H H A D+ + +D Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHQADSDAEVTAD 161 >gi|322384417|ref|ZP_08058103.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150775|gb|EFX44235.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 204 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 15/155 (9%) Query: 7 MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63 MR+I VFD+ETTGLD D+I EI A+ D + V + N G K +PE + L Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEIAAIR-TDLIREYGRLDVRITKNSGTKLTPEIINLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + ++ F + + +AH+A FD+ F+ L ++PS Sbjct: 60 GINESMMRGGIPEELAIPLLACFMS--GSIVVAHHAPFDLSFLARYL-------VEPSSF 110 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITIS--HRS 156 + T +++ P L ++ +R GI ++ HR+ Sbjct: 111 VCTRVLSKLVEPGESASLAAVAERRGIELTGHHRA 145 >gi|229016898|ref|ZP_04173826.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1273] gi|229023104|ref|ZP_04179618.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1272] gi|228738250|gb|EEL88732.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1272] gi|228744459|gb|EEL94533.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1273] Length = 934 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEVHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++I+ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFIQFL 167 >gi|297243541|ref|ZP_06927472.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella vaginalis AMD] gi|296888292|gb|EFH27033.1| DNA polymerase III, alpha subunit (gram-positive type) [Gardnerella vaginalis AMD] Length = 338 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 20/174 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL------CPNGRKNS---PEAL 60 +V D ETTGL+SK D+IIEIGAV+ +D FQ + N KN+ E + Sbjct: 158 VVIDCETTGLNSKVDKIIEIGAVKFID--GKIEEFQKLININCDSVSNFNKNNFIPNEII 215 Query: 61 KLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---D 116 +L GIT L+ EF DF + + +N +FD+ F+N+ L +++ Sbjct: 216 ELTGITSNMLESYGVRLDLALKEFIDFV--EKLPVLGYNVQFDMSFLNSALSSLDERFDH 273 Query: 117 PLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLL 167 L ++I D +++ +N L ++ Y I ++ HR+ A L +HL+ Sbjct: 274 SLSINKIFDISRFVKKEKKFLKNYKLKTVLHEYNIAESVPHRALLDARLTAHLV 327 >gi|326314849|ref|YP_004232521.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371685|gb|ADX43954.1| DNA-directed DNA polymerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 222 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 8/151 (5%) Query: 8 RKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ S+ R E+ A+ L++ + FQ + G P ++L GIT Sbjct: 5 RIAVIDFETTGMTPSQGARATEV-AIVLMEEGRPVDRFQSLM-KTGAWLPPFIVQLTGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L P S+ E F +A +AHNA FD F AEL R D P T Sbjct: 63 PAMLDTAPPAESVMREAARFVG--DAPMVAHNASFDSRFWAAELAR--ADLPSPHAFACT 118 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRS 156 + ++RR +P ++ + L + G+ + R+ Sbjct: 119 VLLSRRLYPEATSHQLGRIVAHLGLPPAARA 149 >gi|16272277|ref|NP_438489.1| ribonuclease T [Haemophilus influenzae Rd KW20] gi|260581209|ref|ZP_05849028.1| ribonuclease T [Haemophilus influenzae RdAW] gi|1173107|sp|P44639|RNT_HAEIN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|1573293|gb|AAC21987.1| ribonuclease T (rnt) [Haemophilus influenzae Rd KW20] gi|260092134|gb|EEW76078.1| ribonuclease T [Haemophilus influenzae RdAW] Length = 229 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 20/190 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L +D Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73 Query: 56 SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R + ++P P + DT S+A + L C+ I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMM 175 + ++ M+ Sbjct: 192 RTAKLFCYMV 201 >gi|154488710|ref|ZP_02029559.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis L2-32] gi|154082847|gb|EDN81892.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis L2-32] Length = 210 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 71/157 (45%), Gaps = 11/157 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL +K DR IEIG V + + + + S A +H IT Sbjct: 7 VVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLIHVD---RSVGASWVHHITARD 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 L P F I E D + ++AHN FD F+ AE R+ P+ S ++ T+ Sbjct: 64 LLHAPDFEGIAHELRDLLAGR--VFVAHNVSFDSRFLLAEYSRMGASIPVHQSTMLCTMK 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 ++R R L+ C +G I++ H AL D+H Sbjct: 122 LSRSL--IGRGKLSDCCDYFG--IANEDAHSALSDAH 154 >gi|188579669|ref|YP_001923114.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] gi|179343167|gb|ACB78579.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] Length = 297 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 10/170 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + D +G + ++ + R + P + SP +++HGI Sbjct: 1 MSVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRETRLIRPPQMRFSPGNIRIHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P+F +F+EF + A +AHNA FD+G + A L +P+ T Sbjct: 58 PADVRDAPTFPEVFAEFRP--DLTGALLLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L IARR P + + L + R GI H H A D+ +++ + + Sbjct: 115 LQIARRIFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAAL 161 >gi|113970710|ref|YP_734503.1| ribonuclease T [Shewanella sp. MR-4] gi|114047939|ref|YP_738489.1| ribonuclease T [Shewanella sp. MR-7] gi|122944589|sp|Q0HTX3|RNT_SHESR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123029558|sp|Q0HHM1|RNT_SHESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|113885394|gb|ABI39446.1| RNAse T [Shewanella sp. MR-4] gi|113889381|gb|ABI43432.1| RNAse T [Shewanella sp. MR-7] Length = 222 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S+ D ++EI AV LL ++T + P G PEAL + Sbjct: 20 VVIDVETAGFNSQTDALLEI-AVTLLKMDDEGLLGIDKTLHFNIEPFEGANLEPEALAFN 78 Query: 64 GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113 GI T+ + +K +F IF + +AHNA FD GF++ ++R + Sbjct: 79 GIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVSKAIERCDL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++A L C GI ++ H AL D+ ++++ Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACIMAGIPFDNKEAHSALYDTERTAELFCY 196 Query: 174 MM 175 ++ Sbjct: 197 IV 198 >gi|220904848|ref|YP_002480160.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869147|gb|ACL49482.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 176 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 10/165 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET+G + + + + +E D T + + + P+ R E +HG+T Sbjct: 10 VAIDFETSGYAAHSACAVGLARIE--DGRVTEQFYSLVRPPSSRVLFTE---IHGLTWPM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LK+ P F ++ + F +AHNA FD + A + + + TL Sbjct: 65 LKNAPVFGDVWPQMESFMKGAGV-LLAHNASFDRRVLLACCREAGAG-VPEQHFLCTLKG 122 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR P LN +C+ +GI + H H A D+ ++VY+ + Sbjct: 123 ARRSLPLPSKKLNHVCEHFGIALEH---HHAGSDAAACAEVYLHL 164 >gi|68248930|ref|YP_248042.1| ribonuclease T [Haemophilus influenzae 86-028NP] gi|81336659|sp|Q4QNL5|RNT_HAEI8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|68057129|gb|AAX87382.1| ribonuclease T [Haemophilus influenzae 86-028NP] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 20/190 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L +D Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73 Query: 56 SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R + ++P P + DT S+A + L C+ I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMM 175 + ++ M+ Sbjct: 192 RTAKLFCYMV 201 >gi|194365080|ref|YP_002027690.1| ribonuclease T [Stenotrophomonas maltophilia R551-3] gi|194347884|gb|ACF51007.1| ribonuclease T [Stenotrophomonas maltophilia R551-3] Length = 194 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 19/171 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ET G DS+ + ++EI AV + L Y + V + G + P++L++ Sbjct: 11 VVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHV-VPAEGLEIDPKSLEVT 69 Query: 64 GITDEFL-----KDKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI + ++K + IF+ + Q A + HNA FD+GF+NA + R Sbjct: 70 GIILDHPFRLAKEEKAALDHIFTPVRAAMKKYGCQRAILVGHNAHFDLGFVNAAVARTGH 129 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 ++P P + DT+++A + + L G+ H A+ D+ Sbjct: 130 KRNPFHPFSVFDTVTLAGIAY--GQTVLARAANAAGLGWDANEAHSAVYDT 178 >gi|86151527|ref|ZP_01069741.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni 260.94] gi|315123999|ref|YP_004066003.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841156|gb|EAQ58404.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni 260.94] gi|315017721|gb|ADT65814.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 253 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 9/145 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 + DIE+TG SK + I+EIGA ++ + + R FQ F+ K PE + +L GIT E Sbjct: 74 IVDIESTGGVSKGE-ILEIGAAKIQNSKEIGR-FQSFV---KVKEIPENITELTGITYEM 128 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ PS + + S+F F +++ ++AHN +FD FI+ L L RI T+ Sbjct: 129 VENAPSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185 Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154 A+ S + L L + G+ +H Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENTH 210 >gi|227514853|ref|ZP_03944902.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum ATCC 14931] gi|227086785|gb|EEI22097.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum ATCC 14931] Length = 946 Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTG K RII+IG V + D N F+ + P R P + +L GI + Sbjct: 16 VVDLETTGTSVKTGSRIIQIGCVLVQDGQVINE-FETKINP--RTVVPLTIEQLTGIKNN 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127 +K P F + ++ ++AHN FD F+NAE +R + PL P+ IDT+ Sbjct: 73 DVKGAPLFEDVAPTLKSLLDD--TIFVAHNVNFDFPFLNAEFERAGEAPLTIPA--IDTV 128 Query: 128 SIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++++ P++ + DL S + I H H A+ D+ + + I+++ Sbjct: 129 TLSQILMPTAPSFRLRDLTSY-----LAIDHDQPHSAVSDAVATAHLLIELL 175 >gi|330504960|ref|YP_004381829.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] gi|328919246|gb|AEB60077.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01] Length = 200 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTG+ R EIG V +++ + +Q + +G P +L GI++ L Sbjct: 6 VIDFETTGVSPTQARATEIG-VAIIEGGRIVDRYQSLM-NSGAWVPPFIEQLTGISNAML 63 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P + +E DF E+ +AHNA FD F +AEL R+ + L P LS Sbjct: 64 RKAPPSDQVMNEVADFIGER--PLLAHNASFDQKFWDAELARVRRRRLQPFACSLLLSRR 121 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S + L +L G+ + R+ H AL D+ + +++ + + Sbjct: 122 LLPEAPS-HKLGNLNAWAGLPDTGRA-HRALADAEMAANLTLHL 163 >gi|289706337|ref|ZP_06502695.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Micrococcus luteus SK58] gi|289556832|gb|EFD50165.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Micrococcus luteus SK58] Length = 371 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 4/124 (3%) Query: 29 IGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87 +GAV + D +R + P G + P +++HGIT++ + D P F+ ++ E DF Sbjct: 24 VGAVRVRDGVMVDRAEWLIRPPVGFDRFDPRNVRIHGITEDRVLDAPRFAQVYDELADFV 83 Query: 88 NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR 147 AHNA FDVG I + L+ +D + + TL +ARR + L S + Sbjct: 84 GTD--VLAAHNAGFDVGVIESGLEVSGRD-VPGLEFVCTLVLARRVYDLPSYALPSAARE 140 Query: 148 YGIT 151 G T Sbjct: 141 AGFT 144 >gi|260582581|ref|ZP_05850371.1| ribonuclease T [Haemophilus influenzae NT127] gi|319775811|ref|YP_004138299.1| ribonuclease T [Haemophilus influenzae F3047] gi|329123653|ref|ZP_08252213.1| ribonuclease T [Haemophilus aegyptius ATCC 11116] gi|260094392|gb|EEW78290.1| ribonuclease T [Haemophilus influenzae NT127] gi|317450402|emb|CBY86618.1| ribonuclease T [Haemophilus influenzae F3047] gi|327469852|gb|EGF15317.1| ribonuclease T [Haemophilus aegyptius ATCC 11116] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 20/190 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L +D Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R + ++P P + DT S+A + L C+ I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMM 175 + ++ M+ Sbjct: 192 RTAKLFCYMV 201 >gi|120608729|ref|YP_968407.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1] gi|120587193|gb|ABM30633.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1] Length = 221 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 8/151 (5%) Query: 8 RKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ S+ R E+ A+ L++ + FQ + G P ++L GIT Sbjct: 4 RIAVIDFETTGMTPSQGARATEV-AIVLMEEGRPVDRFQSLMR-TGAWLPPFIIQLTGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L P S+ E F +A +AHNA FD F AEL R D P T Sbjct: 62 PAMLDTAPPAESVMREAARFVG--DAPMVAHNASFDSRFWAAELAR--ADLPAPHAFACT 117 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRS 156 + ++RR +P ++ + L + G+ + R+ Sbjct: 118 VLLSRRLYPEAASHQLGRIVAHLGLPPAARA 148 >gi|220980061|emb|CAP72253.1| Hypothetical protein [Escherichia coli LF82] gi|323934293|gb|EGB30715.1| exonuclease [Escherichia coli E1520] Length = 185 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 72/164 (43%), Gaps = 5/164 (3%) Query: 13 DIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFL 70 DIE+TGLD +IIEI A+ + + + N R+N P+A +HGI+ E L Sbjct: 9 DIESTGLDFLAGHKIIEI-AITRYELETQRHIDSLEMRFNPRRNIDPKAQAVHGISLEQL 67 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129 +P S+ SE + E + W+AHN + FD+ FI E D I LS Sbjct: 68 AAEPLLSNHASEIGAYM-EACSAWVAHNGEAFDIPFIRHEFSGYGVRLPDVPVIDTMLSG 126 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R L L G H H AL D++L+ + K Sbjct: 127 LWATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQCFFK 170 >gi|332161660|ref|YP_004298237.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665890|gb|ADZ42534.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864087|emb|CBX74161.1| ribonuclease T [Yersinia enterocolitica W22703] Length = 232 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 22/195 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 90 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF EQ A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ + ++ ++ Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCEL 208 Query: 175 M-----VGGSQINFG 184 + +GG + G Sbjct: 209 VNRWKKLGGWPVPAG 223 >gi|239932092|ref|ZP_04689045.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] Length = 327 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 10/186 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRI+ L + + + P + P + +HG+T E L Sbjct: 25 VVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTVVNP---ERDPGPVWIHGLTSEAL 80 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + EF + +AHNA FD I E R + R+ T++++ Sbjct: 81 EGAPLFRDVAEEFATRL--EGRVLVAHNAVFDWQMIAREYARARSEAPVKQRLC-TIALS 137 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + P + L SL +G+ R H AL D+ +L++ + + + +E Sbjct: 138 KELGLPLPNHKLESLAAHFGVV--QRRAHHALDDARVLAEAFRPSLRAAAASGVRLPLHE 195 Query: 190 DRFFKE 195 R E Sbjct: 196 CRPLTE 201 >gi|283851810|ref|ZP_06369087.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B] gi|283572726|gb|EFC20709.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B] Length = 249 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 25/187 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D E TG D + ++ IGAV L S F + P +A +H +T Sbjct: 50 VAVDTELTGFDPRRHALVSIGAVRLRGLSILPGEAFYTLVRPPAAVPR-DATLIHRLTGA 108 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + + F DF A + H+ D+GF+NA +R L + IDTL Sbjct: 109 ALADAPPVAEALAAFLDFLGP--AVVVGHHVDLDMGFLNAAARRHMGGELA-APCIDTLR 165 Query: 129 IAR------------RKHPSS--RND--LNSLCKRYGIT--ISHRSKHGALLDSHLLSDV 170 +A P R D L +LC+RYG+ +H ++ AL ++L + Sbjct: 166 LAMALEEKRLAVAGGAGGPDGFERVDYRLPALCRRYGLPGFAAHDARADALATAYLF--L 223 Query: 171 YIKMMVG 177 Y+ G Sbjct: 224 YLARHCG 230 >gi|258511479|ref|YP_003184913.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478205|gb|ACV58524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 240 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 97/236 (41%), Gaps = 13/236 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R + R +V D ETTGL + R++E+ VE+ + + + P G PEA Sbjct: 1 MRLQEARFVVVDTETTGLPPEG-RVVELALVEVGLECEPQIVYSALVDP-GCPIPPEASA 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H ITD + KP S ++ + + +A +AHNA+FD G L + + Sbjct: 59 VHHITDRDVAGKPRLSQVWPKVLGYIG--DAILVAHNAEFDRGM----LPETGRPWICSK 112 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R+ L R P N + L GI + H AL D+ + + V+ + + + Sbjct: 113 RLAQHLW---RDAPKHSNQV--LRYWLGIDVEVGQPHRALGDAIVTAHVFQRELRAYLEA 167 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + +E F E V + K + + LD + +Q L + W Sbjct: 168 GYPDDVDELIAFAESPIEVQTMPFGKHKGMPLKEVPLDYLDWALRNLQDLSPDLRW 223 >gi|319946618|ref|ZP_08020852.1| DNA polymerase III, epsilon subunit [Streptococcus australis ATCC 700641] gi|319746666|gb|EFV98925.1| DNA polymerase III, epsilon subunit [Streptococcus australis ATCC 700641] Length = 819 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 7/115 (6%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GIT++ LK P FS + + ++ ++A ++AHN KFD + L + + P Sbjct: 58 QLTGITNQQLKKAPDFSQVARQVYELI--EDAVFVAHNVKFDANLLAESLFWEGFELITP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +A+ P+ R +L+SLC+ I + H H A+ D+ + +++K+ Sbjct: 116 R--IDTVELAQVFFPTLERYNLSSLCEELAIPLDH--AHSAISDAQATAQLFLKL 166 >gi|167767436|ref|ZP_02439489.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1] gi|167710728|gb|EDS21307.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1] gi|291558729|emb|CBL37529.1| exonuclease, DNA polymerase III, epsilon subunit family [butyrate-producing bacterium SSC/2] Length = 235 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 9/155 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL +D+IIEIGAV++ D K + + + P + S + L GI+ + Sbjct: 5 VAFDLETTGLSPDSDQIIEIGAVKIRD-GKISGKYNCIIHPE-IEVSDFIINLTGISRDM 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ EF +F + + HN FD F+ K P + + +DTL + Sbjct: 63 LRKGIPLKEGVEEFLEFSG--DLPILGHNVMFDYKFMKMAAASF-KYPFEKTG-VDTLKV 118 Query: 130 ARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGAL 161 AR+ N L +LC Y +HR+ AL Sbjct: 119 ARKLLTGLENKKLETLCAHYHYVNQAAHRAYDDAL 153 >gi|123442415|ref|YP_001006394.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166200024|sp|A1JP36|RNT_YERE8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|122089376|emb|CAL12224.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 215 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 22/195 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF EQ A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCEL 197 Query: 175 M-----VGGSQINFG 184 + +GG + G Sbjct: 198 VNRWKKLGGWPVPAG 212 >gi|196039095|ref|ZP_03106402.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus NVH0597-99] gi|196030240|gb|EDX68840.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus NVH0597-99] Length = 934 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 110/255 (43%), Gaps = 33/255 (12%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGALLDSHL---------------- 166 T+ +A+ P++ + L L K++ + HR+ AL + L Sbjct: 119 TVELAQILLPTADSYKLRDLAKQHELEHDQPHRADSDALATAELFLQFLNEIEKLPLVTL 178 Query: 167 -----LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEE 220 LSDV+ + +N K + EE + NI+L KR+ L + I + Sbjct: 179 QSLYELSDVFQSDIADVLSVNILKKMMHGKKAAEEYEVYRNIALRKRNYSLNLSEICSSK 238 Query: 221 LDEH-DKTIQTLGKN 234 D KTI L N Sbjct: 239 FDAFLHKTIDKLALN 253 >gi|197285252|ref|YP_002151124.1| ribonuclease T [Proteus mirabilis HI4320] gi|227355678|ref|ZP_03840072.1| exoribonuclease T [Proteus mirabilis ATCC 29906] gi|194682739|emb|CAR42945.1| ribonuclease T [Proteus mirabilis HI4320] gi|227164285|gb|EEI49178.1| exoribonuclease T [Proteus mirabilis ATCC 29906] Length = 212 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + K + T + P G P AL+ G Sbjct: 20 VVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVDPFEGANLEPAALEFTG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF + N A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKMVRKGMKDANCNRAIIVAHNANFDHSFVMAAAERAGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI + HGAL D++ S ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTILAKACITAGIPFDSKLAHGALYDTNRTSLLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|317048499|ref|YP_004116147.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b] gi|316950116|gb|ADU69591.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b] Length = 222 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V+++D N +CP+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGLQGG---VVEVASVDVIDGQILN-PMSDLICPD-RPISHQAMAVHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP+ + + ++AHNA FD + P P + I T+++A Sbjct: 59 ADKPTIEQAIGRY-----HGSPHYVAHNASFDRRML----------PEMPGQWICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 R+ P + +L + ++ + H AL D ++ + + I++M Sbjct: 104 RQLWPGQKYGNQALRHSLKLDVTPPADLHAHRALYDCYVTAALLIRIM 151 >gi|146292700|ref|YP_001183124.1| ribonuclease T [Shewanella putrefaciens CN-32] gi|166200020|sp|A4Y5U2|RNT_SHEPC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|145564390|gb|ABP75325.1| RNAse T [Shewanella putrefaciens CN-32] Length = 224 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S+ D ++EI AV LL ++T + P G P AL + Sbjct: 20 VVIDVETAGFNSQTDALLEI-AVTLLKMDDEGMLGIDKTLHFHIEPFEGANLEPAALAFN 78 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN- 114 GI + +K +F IF + +AHNA FD GF++ ++R + Sbjct: 79 GIDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVSKAIERCDL 138 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++A L C GI ++ H AL D+ ++++ Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACMMAGIPFDNKEAHSALYDTERTAELFCY 196 Query: 174 MM 175 ++ Sbjct: 197 IV 198 >gi|302342239|ref|YP_003806768.1| DNA polymerase III, subunit epsilon [Desulfarculus baarsii DSM 2075] gi|301638852|gb|ADK84174.1| DNA polymerase III, epsilon subunit [Desulfarculus baarsii DSM 2075] Length = 240 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 27/183 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG+D D ++ GAV L + F + P G + ++ +HG+T + Sbjct: 48 VVLDLETTGVDLARDGVVSAGAVRLRGGRVLLGQYFDEMILPQGEVPA-SSITIHGLTPQ 106 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---------------RI 113 L + +F + F +AHNA FD+ FI+ ++ R+ Sbjct: 107 RLAAGRPLAQVFDDLAGFIGADIV--VAHNAGFDLHFIDRHMRAHHGLALQNLALCTLRL 164 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + L PS D + R K + L+++ +R+G+ R H A+ D+ + + ++ + Sbjct: 165 CRALLLPS---DPFGVGRHK---GQCRLDAIAERFGLDTPQR--HTAIGDALVTALIFQR 216 Query: 174 MMV 176 M+ Sbjct: 217 MLA 219 >gi|300811276|ref|ZP_07091776.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497736|gb|EFK32758.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 290 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 13/168 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIETTGL++++D+I+ IGAV K + T L + ++L GIT Sbjct: 127 VAVDIETTGLNTESDQILSIGAV------KHDGTEFYRLIKQDIDVPKQIVELTGITPAM 180 Query: 70 L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L KD + E DF + + +N +FD F+N E ++ L + I D L Sbjct: 181 LDKDGVPLQDVLGELTDFVGD--VPIVGYNFRFDSAFLNREYRKCGMQEL-KNEIKDLLP 237 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +RK N L ++ YG I ++ H A+ D+ ++ +K++ Sbjct: 238 VVKRKEKFLDNYKLQTVLSNYG--IENKVPHNAVSDARATKELAMKLI 283 >gi|296127268|ref|YP_003634520.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM 12563] gi|296019084|gb|ADG72321.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM 12563] Length = 252 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 11/164 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-GITDEF 69 + D+ETTGL + D+IIEIGA++ D N+ F P + + IT++ Sbjct: 63 IIDVETTGLKPREDKIIEIGAIKYRD----NKEIDYFSTLVKVDYIPNFISSYTNITNKM 118 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128 +K+ P +F+DF + + +N FD+ F+ L + N + L + ID + Sbjct: 119 VKNAPRVDEAIKQFYDFVGDD--ILVGYNVPFDIKFLYDALYEVSNGELLLNNDFIDVMY 176 Query: 129 IARRKHPSSRNDLN-SLCKRYGITISHRSKHGALLDSHLLSDVY 171 IA+R N ++ Y I+I + H A+ D L S +Y Sbjct: 177 IAKRVLKDLENYKQVTVASYYNISIDNL--HRAMGDCKLCSAIY 218 >gi|295135414|ref|YP_003586090.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] gi|294983429|gb|ADF53894.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] Length = 282 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 10/165 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ET ++ +G VE + K R F + P +P A+++HGIT E Sbjct: 6 VVFDFET----ARGKNPCSLGMVEYKN-GKKYREFYELINPEVAYFNPFAIQIHGITYED 60 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + +FS ++ F + +AHNAKFD + LQR D + P TL Sbjct: 61 VQHERNFSELWDAMLPFI--EGKTLVAHNAKFDNAVLLYSLQRYGID-VPPYASFCTLQR 117 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR L+SL + + H AL D+ + ++++K+ Sbjct: 118 ARRLVALPSYKLSSLANFF--EVPQLRHHNALEDAFVCGELFLKL 160 >gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] Length = 327 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 9/195 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRII L + + + P + P + +HG+T + L Sbjct: 25 VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNP---ERDPGPVWIHGLTSDAL 80 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F I EF + + +AHNA FD I E R + R+ + Sbjct: 81 EGAPLFQDIADEFSSRLDGRVL--VAHNAVFDWQMIAREYARAGRVAPVSQRLCTIVLSK 138 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 P + L SL +G+ + R+ H AL D+ +L++ + + + + +E Sbjct: 139 ELGLPLPNHKLESLAAHFGV-VQQRAHH-ALDDARVLAEAFRPSLRAAAARSVRLPLHEC 196 Query: 191 RFFKE-EKKTVPNIS 204 R E + VP S Sbjct: 197 RPLTEWTDRAVPRQS 211 >gi|78776758|ref|YP_393073.1| exonuclease [Sulfurimonas denitrificans DSM 1251] gi|78497298|gb|ABB43838.1| Exonuclease [Sulfurimonas denitrificans DSM 1251] Length = 234 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 15/132 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D+ETTGL++ D+I IG + + S+T + L G+K S +A ++ IT+E Sbjct: 3 IFLDVETTGLEN-GDKICSIGIICV---SETAIFSKYELVNEGKKISSKASSINHITNEM 58 Query: 70 LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KDKP F S+ W+ +E Q++ IAHN FD+ + + L +++DT Sbjct: 59 IKDKPKFKD--SKTWEILHENNNQSSTIIAHNVNFDLKML------LQSGFLWQGKVVDT 110 Query: 127 LSIARRKHPSSR 138 L + + P Sbjct: 111 LRVTKHLIPECE 122 >gi|15802257|ref|NP_288281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 EDL933] gi|15831808|ref|NP_310581.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. Sakai] gi|168762363|ref|ZP_02787370.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501] gi|168788263|ref|ZP_02813270.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869] gi|217328801|ref|ZP_03444882.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588] gi|261227657|ref|ZP_05941938.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK2000] gi|261258177|ref|ZP_05950710.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK966] gi|12515897|gb|AAG56834.1|AE005407_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13362022|dbj|BAB35977.1| exonuclease X [Escherichia coli O157:H7 str. Sakai] gi|189367397|gb|EDU85813.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501] gi|189372044|gb|EDU90460.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869] gi|209767640|gb|ACI82132.1| exonuclease X [Escherichia coli] gi|217318148|gb|EEC26575.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588] gi|320188544|gb|EFW63206.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC1212] gi|326342223|gb|EGD66004.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1044] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVHPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|317497265|ref|ZP_07955589.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA] gi|316895510|gb|EFV17668.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA] Length = 235 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 9/155 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL +D+IIEIGAV++ D K + + + P + S + L GI+ + Sbjct: 5 VAFDLETTGLSPDSDQIIEIGAVKIRD-GKISGKYNCIIHPE-IEVSDFIINLTGISRDM 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ EF +F + + HN FD F+ K P + + +DTL + Sbjct: 63 LRKGIPLKEGVEEFLEFSG--DLPVLGHNVMFDYKFMKMAAASF-KYPFEKTG-VDTLKV 118 Query: 130 ARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGAL 161 AR+ N L +LC Y +HR+ AL Sbjct: 119 ARKLLTGLENKKLETLCAHYHYVNQAAHRAYDDAL 153 >gi|313618186|gb|EFR90268.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria innocua FSL S4-378] Length = 931 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 1 MIRKNKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + K R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P Sbjct: 1 MEQMKKKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE--KPIPAF 57 Query: 60 LK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ++ L GI+ + +K+ P F + ++ ++AHN FD F+ E+ R L Sbjct: 58 IQELTGISPKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-L 114 Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + +DT+ +AR +P L L +G + H H A D+ + +D Sbjct: 115 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 164 >gi|313887234|ref|ZP_07820929.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I] gi|312923325|gb|EFR34139.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I] Length = 255 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67 +VFDIE TGLD NDRIIE+ ++L+ D + RT + N P E+ +HGITD Sbjct: 10 VVFDIEATGLDITNDRIIELTILKLMPDGERIVRTRRF----NPEMPIPAESTAIHGITD 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIID 125 E ++D P F + + + + +N+ +FD+ + E R + L + ID Sbjct: 66 EDVRDCPPFRACAKSLAELID--GCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLSRQHID 123 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +I + P + + C R H HGA D+ DV + + Sbjct: 124 VQTIFHKMEPRTLEGAVRFYCHR-----EHIGAHGAEADTIATLDVLLAQL 169 >gi|120599226|ref|YP_963800.1| ribonuclease T [Shewanella sp. W3-18-1] gi|166200022|sp|A1RKQ1|RNT_SHESW RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|120559319|gb|ABM25246.1| RNAse T [Shewanella sp. W3-18-1] gi|319426004|gb|ADV54078.1| ribonuclease T [Shewanella putrefaciens 200] Length = 223 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S+ D ++EI AV LL ++T + P G P AL + Sbjct: 20 VVIDVETAGFNSQTDALLEI-AVTLLKMDDEGMLGIDKTLHFHIEPFEGANLEPAALAFN 78 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN- 114 GI + +K +F IF + +AHNA FD GF++ ++R + Sbjct: 79 GIDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVSKAIERCDL 138 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++A L C GI ++ H AL D+ ++++ Sbjct: 139 KRSPFHPFATFDTATLAGLA--IGHTVLAKACMMAGIPFDNKEAHSALYDTERTAELFCY 196 Query: 174 MM 175 ++ Sbjct: 197 IV 198 >gi|330829256|ref|YP_004392208.1| ribonuclease T [Aeromonas veronii B565] gi|328804392|gb|AEB49591.1| Ribonuclease T [Aeromonas veronii B565] Length = 225 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A L + ++ F + P G AL+ G Sbjct: 18 VVIDVETAGFNAKTDALLEIAAYTLKMDEQGWLVPDQVFHFHVEPFEGANLEKAALEFTG 77 Query: 65 ITDEF------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--I 113 I D + + +K + + IF EQ+ A +AHNA FD GF+ A +R + Sbjct: 78 I-DPYNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAAAERAGL 136 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C+ I ++ H AL D+ ++++ Sbjct: 137 KRNPFHPFATFDTAALSGLA--LGQTVLAKACQSARIPFDNKEAHSALYDTERTTELFCH 194 Query: 174 MM 175 ++ Sbjct: 195 IV 196 >gi|300938801|ref|ZP_07153512.1| exonuclease [Escherichia coli MS 21-1] gi|300456266|gb|EFK19759.1| exonuclease [Escherichia coli MS 21-1] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDIID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|294083688|ref|YP_003550445.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum marinum IMCC1322] gi|292663260|gb|ADE38361.1| DNA polymerase III, epsilon subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 730 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 36/185 (19%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT----FQVFLCPNGRKNSPEALKLHGI 65 + D+ETTGL + DRI++IGA+ + +R ++ + P G + +HGI Sbjct: 34 VSLDLETTGLKPQTDRIVQIGAIGVDVAVAADRAEDDHIEMLVDP-GIAVPAASTAVHGI 92 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE---------------L 110 D L D + F N++ + +N FD+ F+ E L Sbjct: 93 NDAMLADAKPIAVALPALRSFINKRII--LGYNIGFDLAFLTNEAKRQGLEWKWSGALCL 150 Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +++ L P + L IA DL++L YG+ + R H AL D+ + + V Sbjct: 151 RQLATVLLGPEAM---LMIA---------DLDALAAHYGVPVIGR--HTALGDATITAQV 196 Query: 171 YIKMM 175 Y KM+ Sbjct: 197 YHKMV 201 >gi|312881846|ref|ZP_07741617.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122] gi|309370492|gb|EFP97973.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122] Length = 215 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++ D ++EI A+ L N T + P G EAL+ +G Sbjct: 20 VVIDVETAGFNADTDALLEICAITLTMDEFGNLIPASTLHFHVEPFEGANIEKEALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ + + E + EQ A +AHNA FD F+ A +R + Sbjct: 80 IRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCNRAIIVAHNATFDHNFVMAASERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ ++ H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNKEAHSALYDTQKTAELFCG 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|194433962|ref|ZP_03066234.1| exodeoxyribonuclease X [Shigella dysenteriae 1012] gi|194417834|gb|EDX33931.1| exodeoxyribonuclease X [Shigella dysenteriae 1012] gi|320182620|gb|EFW57509.1| Exodeoxyribonuclease X [Shigella boydii ATCC 9905] gi|332095285|gb|EGJ00309.1| exonuclease family protein [Shigella dysenteriae 155-74] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|168752095|ref|ZP_02777117.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113] gi|168758576|ref|ZP_02783583.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401] gi|168770825|ref|ZP_02795832.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486] gi|168783143|ref|ZP_02808150.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076] gi|168802378|ref|ZP_02827385.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508] gi|195939745|ref|ZP_03085127.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4024] gi|208810405|ref|ZP_03252281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206] gi|208816703|ref|ZP_03257823.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045] gi|208820052|ref|ZP_03260372.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042] gi|209398184|ref|YP_002270926.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115] gi|254793468|ref|YP_003078305.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14359] gi|188013988|gb|EDU52110.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113] gi|188999500|gb|EDU68486.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076] gi|189354630|gb|EDU73049.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401] gi|189360293|gb|EDU78712.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486] gi|189375616|gb|EDU94032.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508] gi|208724921|gb|EDZ74628.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206] gi|208731046|gb|EDZ79735.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045] gi|208740175|gb|EDZ87857.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042] gi|209159584|gb|ACI37017.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115] gi|209767642|gb|ACI82133.1| exonuclease X [Escherichia coli] gi|209767646|gb|ACI82135.1| exonuclease X [Escherichia coli] gi|254592868|gb|ACT72229.1| DNA exonuclease X [Escherichia coli O157:H7 str. TW14359] gi|326343773|gb|EGD67535.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1125] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVHPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|94676709|ref|YP_588563.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166228561|sp|Q1LU01|RNT_BAUCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|94219859|gb|ABF14018.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 218 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A+ L +D+ KT++T + P G PEAL +G Sbjct: 20 VVIDVETAGFNSGTDALLEIAAITLQMDHHGWLKTHKTLHFNIEPFPGSILQPEALIFNG 79 Query: 65 I-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR--IN 114 I D L+ + E + ++ A +AHNA FD F+ A R I Sbjct: 80 IDPDNPLRYAVTEREALYELFTIVHQGIKDDDCHRAILVAHNAAFDHSFLMAAANRTKIK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +P P DT +++ + L C GI + H AL D+ ++++ ++ Sbjct: 140 HNPFHPFATFDTAALSGLV--LGQTVLLKACLTAGIPFNTSEAHSALYDAERTAELFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|313668201|ref|YP_004048485.1| DNA polymerase III subunit [Neisseria lactamica ST-640] gi|313005663|emb|CBN87106.1| putative DNA polymerase III subunit [Neisseria lactamica 020-06] Length = 470 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 M V D+E+TG + D + E+ V+ + R + N +K P+ +L GI Sbjct: 28 MPVAVVDLESTGGNLYEDMVTEVALVKF----EQGRAERYEWLVNPQKPIPKFVAELTGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D P F+ I E + + +AHN++FD F+ E R P+ + Sbjct: 84 SDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LC 139 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 140 SVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|148825392|ref|YP_001290145.1| ribonuclease T [Haemophilus influenzae PittEE] gi|229846411|ref|ZP_04466519.1| ribonuclease T [Haemophilus influenzae 7P49H1] gi|166228565|sp|A5UAG1|RNT_HAEIE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|148715552|gb|ABQ97762.1| ribonuclease T [Haemophilus influenzae PittEE] gi|229810504|gb|EEP46222.1| ribonuclease T [Haemophilus influenzae 7P49H1] Length = 229 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 20/190 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L +D Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R + ++P P + DT S+A + L C I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMM 175 ++++ M+ Sbjct: 192 RTAELFCYMV 201 >gi|291524324|emb|CBK89911.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium rectale DSM 17629] Length = 260 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 21/173 (12%) Query: 11 VFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHG 64 V D+E TGL +KND+IIEIGA E++D T + P +++ P+ ++ L G Sbjct: 27 VIDLEMTGLSAKNDKIIEIGAARVRGGEIVD------TISTLVNP--KQHIPQRVQELTG 78 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD +++ +F + + N FD F+ +N Sbjct: 79 ITDSDVENAADMDVAVDNLLNFIGDDII--LGQNVTFDYSFLKQ--WAVNHKRTLSLNAY 134 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 DTL IAR+ P+ ++ L LC+ +G +S + H AL D+ ++ K++V Sbjct: 135 DTLKIARKCLPAEQSKKLEDLCEYFG--VSRENAHRALDDAIETKQIFEKLLV 185 >gi|58337906|ref|YP_194491.1| DNA polymerase III [Lactobacillus acidophilus NCFM] gi|227902927|ref|ZP_04020732.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796] gi|58255223|gb|AAV43460.1| DNA polymerase III [Lactobacillus acidophilus NCFM] gi|227869343|gb|EEJ76764.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796] Length = 318 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 11/158 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTGL DRI E+GAV++ + ++ + P K KL+GIT+E + Sbjct: 35 MLDIETTGLSPYRDRITELGAVKVRNGQIVDQYTNLVKFPKNNKVPAFITKLNGITEEQI 94 Query: 71 KDK--PSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P+ +I +EF +F + + IA +N FD+ F+ +L + K P+ + +D L Sbjct: 95 INEGIPAEQAI-TEFREFIGD---DVIAGYNINFDLNFL-YDLSQKFKLPILNNDYVDVL 149 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P R N L +R G I+ +H L DS Sbjct: 150 RLARAYYPRERHNRLIDCMQRAG--IAKVEQHHGLADS 185 >gi|189500246|ref|YP_001959716.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides BS1] gi|189495687|gb|ACE04235.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides BS1] Length = 232 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 20/182 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE--ALKLH 63 +R +VFD ETTG D+ D +I IGAV + + +F+V + R N E A+ H Sbjct: 43 VRYVVFDTETTGFDTSRDLVISIGAVAINALHIDVQDSFEVLI---RRDNVGEKDAVTTH 99 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 G+ + L + F ++ + +A +A FDV IN L R L + + Sbjct: 100 GLLCKDLDEGGEEQESLDAFINYVS--TGVLVAQHADFDVAMINRMLHRYYGFEL-FNHV 156 Query: 124 IDTLSIARR---------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT S+A+R H S L+ L RY I + R H A D+ L + ++ + Sbjct: 157 IDTASLAKRLEKGPYFNLAHKSGEYRLDMLLDRYNIRMHDR--HTAAGDAFLTARLFQML 214 Query: 175 MV 176 + Sbjct: 215 LA 216 >gi|16129797|ref|NP_416358.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655] gi|74311833|ref|YP_310252.1| exodeoxyribonuclease X [Shigella sonnei Ss046] gi|82776429|ref|YP_402778.1| exodeoxyribonuclease X [Shigella dysenteriae Sd197] gi|89108684|ref|AP_002464.1| DNA exonuclease X [Escherichia coli str. K-12 substr. W3110] gi|91211067|ref|YP_541053.1| exodeoxyribonuclease X [Escherichia coli UTI89] gi|110641962|ref|YP_669692.1| exodeoxyribonuclease X [Escherichia coli 536] gi|117623997|ref|YP_852910.1| exodeoxyribonuclease X [Escherichia coli APEC O1] gi|157159299|ref|YP_001463146.1| exodeoxyribonuclease X [Escherichia coli E24377A] gi|161486210|ref|NP_754148.2| exodeoxyribonuclease X [Escherichia coli CFT073] gi|170081500|ref|YP_001730820.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B] gi|170681411|ref|YP_001743401.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5] gi|188495324|ref|ZP_03002594.1| exodeoxyribonuclease X [Escherichia coli 53638] gi|191168492|ref|ZP_03030279.1| exodeoxyribonuclease X [Escherichia coli B7A] gi|191172968|ref|ZP_03034502.1| exodeoxyribonuclease X [Escherichia coli F11] gi|193066046|ref|ZP_03047103.1| exodeoxyribonuclease X [Escherichia coli E22] gi|194429668|ref|ZP_03062186.1| exodeoxyribonuclease X [Escherichia coli B171] gi|194439062|ref|ZP_03071145.1| exodeoxyribonuclease X [Escherichia coli 101-1] gi|209919210|ref|YP_002293294.1| exodeoxyribonuclease X [Escherichia coli SE11] gi|218554418|ref|YP_002387331.1| exodeoxyribonuclease X [Escherichia coli IAI1] gi|218558708|ref|YP_002391621.1| exodeoxyribonuclease X [Escherichia coli S88] gi|218689782|ref|YP_002397994.1| exodeoxyribonuclease X [Escherichia coli ED1a] gi|218695410|ref|YP_002403077.1| exodeoxyribonuclease X [Escherichia coli 55989] gi|218699585|ref|YP_002407214.1| exodeoxyribonuclease X [Escherichia coli IAI39] gi|218705343|ref|YP_002412862.1| exodeoxyribonuclease X [Escherichia coli UMN026] gi|227885729|ref|ZP_04003534.1| exodeoxyribonuclease X [Escherichia coli 83972] gi|237705796|ref|ZP_04536277.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA] gi|238901059|ref|YP_002926855.1| DNA exonuclease X [Escherichia coli BW2952] gi|256017967|ref|ZP_05431832.1| exodeoxyribonuclease X [Shigella sp. D9] gi|256022492|ref|ZP_05436357.1| exodeoxyribonuclease X [Escherichia sp. 4_1_40B] gi|260844189|ref|YP_003221967.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009] gi|260855770|ref|YP_003229661.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368] gi|260868365|ref|YP_003234767.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128] gi|291283026|ref|YP_003499844.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615] gi|293405339|ref|ZP_06649331.1| exodeoxyribonuclease X [Escherichia coli FVEC1412] gi|293410154|ref|ZP_06653730.1| conserved hypothetical protein [Escherichia coli B354] gi|293415159|ref|ZP_06657802.1| exodeoxyribonuclease X [Escherichia coli B185] gi|293446216|ref|ZP_06662638.1| exodeoxyribonuclease X [Escherichia coli B088] gi|298380980|ref|ZP_06990579.1| exodeoxyribonuclease X [Escherichia coli FVEC1302] gi|300816266|ref|ZP_07096488.1| exonuclease [Escherichia coli MS 107-1] gi|300824216|ref|ZP_07104334.1| exonuclease [Escherichia coli MS 119-7] gi|300899088|ref|ZP_07117373.1| exonuclease [Escherichia coli MS 198-1] gi|300917583|ref|ZP_07134236.1| exonuclease [Escherichia coli MS 115-1] gi|300924914|ref|ZP_07140845.1| exonuclease [Escherichia coli MS 182-1] gi|300928872|ref|ZP_07144378.1| exonuclease [Escherichia coli MS 187-1] gi|300951460|ref|ZP_07165297.1| exonuclease [Escherichia coli MS 116-1] gi|300956649|ref|ZP_07168925.1| exonuclease [Escherichia coli MS 175-1] gi|300982052|ref|ZP_07175871.1| exonuclease [Escherichia coli MS 200-1] gi|300994204|ref|ZP_07180761.1| exonuclease [Escherichia coli MS 45-1] gi|301025418|ref|ZP_07188970.1| exonuclease [Escherichia coli MS 196-1] gi|301050807|ref|ZP_07197661.1| exonuclease [Escherichia coli MS 185-1] gi|301327607|ref|ZP_07220824.1| exonuclease [Escherichia coli MS 78-1] gi|306814328|ref|ZP_07448494.1| exodeoxyribonuclease X [Escherichia coli NC101] gi|307138504|ref|ZP_07497860.1| exodeoxyribonuclease X [Escherichia coli H736] gi|307314078|ref|ZP_07593690.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W] gi|309789238|ref|ZP_07683831.1| exonuclease family protein [Shigella dysenteriae 1617] gi|309794224|ref|ZP_07688648.1| exonuclease [Escherichia coli MS 145-7] gi|312969882|ref|ZP_07784065.1| exonuclease family protein [Escherichia coli 1827-70] gi|331642455|ref|ZP_08343590.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H736] gi|331653250|ref|ZP_08354255.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M718] gi|331668536|ref|ZP_08369384.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA271] gi|331673376|ref|ZP_08374144.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA280] gi|331677723|ref|ZP_08378398.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H591] gi|331683348|ref|ZP_08383949.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H299] gi|332279002|ref|ZP_08391415.1| exodeoxyribonuclease X [Shigella sp. D9] gi|84027958|sp|P0AEK1|EXOX_ECOL6 RecName: Full=Exodeoxyribonuclease 10; AltName: Full=Exodeoxyribonuclease X; Short=Exo X; Short=Exonuclease X gi|84027959|sp|P0AEK0|EXOX_ECOLI RecName: Full=Exodeoxyribonuclease 10; AltName: Full=Exodeoxyribonuclease X; Short=Exo X; Short=Exonuclease X gi|6166471|gb|AAF04847.1|AF194116_1 exonuclease X [Escherichia coli] gi|1788149|gb|AAC74914.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655] gi|73855310|gb|AAZ88017.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81240577|gb|ABB61287.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|85675148|dbj|BAE76547.1| DNA exonuclease X [Escherichia coli str. K12 substr. W3110] gi|91072641|gb|ABE07522.1| exodeoxyribonuclease X [Escherichia coli UTI89] gi|110343554|gb|ABG69791.1| exodeoxyribonuclease X [Escherichia coli 536] gi|115513121|gb|ABJ01196.1| exodeoxyribonuclease X [Escherichia coli APEC O1] gi|157081329|gb|ABV21037.1| exodeoxyribonuclease X [Escherichia coli E24377A] gi|169889335|gb|ACB03042.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B] gi|170519129|gb|ACB17307.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5] gi|188490523|gb|EDU65626.1| exodeoxyribonuclease X [Escherichia coli 53638] gi|190901445|gb|EDV61207.1| exodeoxyribonuclease X [Escherichia coli B7A] gi|190906679|gb|EDV66284.1| exodeoxyribonuclease X [Escherichia coli F11] gi|192926283|gb|EDV80920.1| exodeoxyribonuclease X [Escherichia coli E22] gi|194412310|gb|EDX28614.1| exodeoxyribonuclease X [Escherichia coli B171] gi|194422021|gb|EDX38025.1| exodeoxyribonuclease X [Escherichia coli 101-1] gi|209767638|gb|ACI82131.1| exonuclease X [Escherichia coli] gi|209767644|gb|ACI82134.1| exonuclease X [Escherichia coli] gi|209912469|dbj|BAG77543.1| DNA exonuclease X [Escherichia coli SE11] gi|218352142|emb|CAU97881.1| DNA exonuclease X [Escherichia coli 55989] gi|218361186|emb|CAQ98770.1| DNA exonuclease X [Escherichia coli IAI1] gi|218365477|emb|CAR03204.1| DNA exonuclease X [Escherichia coli S88] gi|218369571|emb|CAR17340.1| DNA exonuclease X [Escherichia coli IAI39] gi|218427346|emb|CAR08241.2| DNA exonuclease X [Escherichia coli ED1a] gi|218432440|emb|CAR13333.1| DNA exonuclease X [Escherichia coli UMN026] gi|222033593|emb|CAP76334.1| exodeoxyribonuclease 10 [Escherichia coli LF82] gi|226900553|gb|EEH86812.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA] gi|227837302|gb|EEJ47768.1| exodeoxyribonuclease X [Escherichia coli 83972] gi|238860815|gb|ACR62813.1| DNA exonuclease X [Escherichia coli BW2952] gi|257754419|dbj|BAI25921.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368] gi|257759336|dbj|BAI30833.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009] gi|257764721|dbj|BAI36216.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128] gi|260449035|gb|ACX39457.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli DH1] gi|281178912|dbj|BAI55242.1| DNA exonuclease X [Escherichia coli SE15] gi|284921762|emb|CBG34835.1| exodeoxyribonuclease X [Escherichia coli 042] gi|290762899|gb|ADD56860.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615] gi|291323046|gb|EFE62474.1| exodeoxyribonuclease X [Escherichia coli B088] gi|291427547|gb|EFF00574.1| exodeoxyribonuclease X [Escherichia coli FVEC1412] gi|291432807|gb|EFF05786.1| exodeoxyribonuclease X [Escherichia coli B185] gi|291470622|gb|EFF13106.1| conserved hypothetical protein [Escherichia coli B354] gi|294490108|gb|ADE88864.1| exodeoxyribonuclease X [Escherichia coli IHE3034] gi|298278422|gb|EFI19936.1| exodeoxyribonuclease X [Escherichia coli FVEC1302] gi|299880094|gb|EFI88305.1| exonuclease [Escherichia coli MS 196-1] gi|300297496|gb|EFJ53881.1| exonuclease [Escherichia coli MS 185-1] gi|300307354|gb|EFJ61874.1| exonuclease [Escherichia coli MS 200-1] gi|300316527|gb|EFJ66311.1| exonuclease [Escherichia coli MS 175-1] gi|300357297|gb|EFJ73167.1| exonuclease [Escherichia coli MS 198-1] gi|300406332|gb|EFJ89870.1| exonuclease [Escherichia coli MS 45-1] gi|300415183|gb|EFJ98493.1| exonuclease [Escherichia coli MS 115-1] gi|300418932|gb|EFK02243.1| exonuclease [Escherichia coli MS 182-1] gi|300449289|gb|EFK12909.1| exonuclease [Escherichia coli MS 116-1] gi|300463162|gb|EFK26655.1| exonuclease [Escherichia coli MS 187-1] gi|300523287|gb|EFK44356.1| exonuclease [Escherichia coli MS 119-7] gi|300530956|gb|EFK52018.1| exonuclease [Escherichia coli MS 107-1] gi|300845856|gb|EFK73616.1| exonuclease [Escherichia coli MS 78-1] gi|305852487|gb|EFM52938.1| exodeoxyribonuclease X [Escherichia coli NC101] gi|306906216|gb|EFN36733.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W] gi|307553862|gb|ADN46637.1| exodeoxyribonuclease X [Escherichia coli ABU 83972] gi|307626675|gb|ADN70979.1| exodeoxyribonuclease X [Escherichia coli UM146] gi|308122129|gb|EFO59391.1| exonuclease [Escherichia coli MS 145-7] gi|308922992|gb|EFP68506.1| exonuclease family protein [Shigella dysenteriae 1617] gi|310338167|gb|EFQ03256.1| exonuclease family protein [Escherichia coli 1827-70] gi|312946443|gb|ADR27270.1| exodeoxyribonuclease X [Escherichia coli O83:H1 str. NRG 857C] gi|315061147|gb|ADT75474.1| DNA exonuclease X [Escherichia coli W] gi|315136487|dbj|BAJ43646.1| exodeoxyribonuclease 10 [Escherichia coli DH1] gi|315286537|gb|EFU45972.1| exonuclease [Escherichia coli MS 110-3] gi|315290373|gb|EFU49749.1| exonuclease [Escherichia coli MS 153-1] gi|320194441|gb|EFW69072.1| Exodeoxyribonuclease X [Escherichia coli WV_060327] gi|320198024|gb|EFW72632.1| Exodeoxyribonuclease X [Escherichia coli EC4100B] gi|320641696|gb|EFX11084.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. G5101] gi|320647056|gb|EFX15889.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. 493-89] gi|320652339|gb|EFX20637.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. H 2687] gi|320657940|gb|EFX25702.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658513|gb|EFX26207.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. USDA 5905] gi|320668411|gb|EFX35238.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. LSU-61] gi|323152600|gb|EFZ38877.1| exonuclease family protein [Escherichia coli EPECa14] gi|323158672|gb|EFZ44686.1| exonuclease family protein [Escherichia coli E128010] gi|323166600|gb|EFZ52360.1| exonuclease family protein [Shigella sonnei 53G] gi|323180624|gb|EFZ66169.1| exonuclease family protein [Escherichia coli 1180] gi|323186407|gb|EFZ71755.1| exonuclease family protein [Escherichia coli 1357] gi|323378276|gb|ADX50544.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli KO11] gi|323940489|gb|EGB36680.1| exonuclease [Escherichia coli E482] gi|323948271|gb|EGB44259.1| exonuclease [Escherichia coli H120] gi|323952346|gb|EGB48219.1| exonuclease [Escherichia coli H252] gi|323956475|gb|EGB52217.1| exonuclease [Escherichia coli H263] gi|323968612|gb|EGB64018.1| exonuclease [Escherichia coli M863] gi|323972649|gb|EGB67852.1| exonuclease [Escherichia coli TA007] gi|323977972|gb|EGB73058.1| exonuclease [Escherichia coli TW10509] gi|324007199|gb|EGB76418.1| exonuclease [Escherichia coli MS 57-2] gi|324012816|gb|EGB82035.1| exonuclease [Escherichia coli MS 60-1] gi|324018034|gb|EGB87253.1| exonuclease [Escherichia coli MS 117-3] gi|324118904|gb|EGC12793.1| exonuclease [Escherichia coli E1167] gi|327252967|gb|EGE64621.1| exonuclease family protein [Escherichia coli STEC_7v] gi|331039253|gb|EGI11473.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H736] gi|331049348|gb|EGI21420.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M718] gi|331063730|gb|EGI35641.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA271] gi|331069574|gb|EGI40961.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA280] gi|331074183|gb|EGI45503.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H591] gi|331079563|gb|EGI50760.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H299] gi|332101354|gb|EGJ04700.1| exodeoxyribonuclease X [Shigella sp. D9] gi|332343569|gb|AEE56903.1| exonuclease [Escherichia coli UMNK88] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|332090017|gb|EGI95117.1| exonuclease family protein [Shigella boydii 5216-82] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|315303836|ref|ZP_07874324.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria ivanovii FSL F6-596] gi|313627797|gb|EFR96442.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria ivanovii FSL F6-596] Length = 928 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 11/165 (6%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S++DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASRDDRIIQFAAC-FVESGKRLETYATFLNPE--KPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + ++D P F + + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 SPKDVRDAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMNRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +AR +P L L +G + H H A D+ + +D Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161 >gi|82543665|ref|YP_407612.1| exodeoxyribonuclease X [Shigella boydii Sb227] gi|81245076|gb|ABB65784.1| conserved hypothetical protein [Shigella boydii Sb227] gi|320177515|gb|EFW52509.1| Exodeoxyribonuclease X [Shigella dysenteriae CDC 74-1112] gi|320183242|gb|EFW58099.1| Exodeoxyribonuclease X [Shigella flexneri CDC 796-83] gi|332096685|gb|EGJ01676.1| exonuclease family protein [Shigella boydii 3594-74] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|323186850|gb|EFZ72169.1| exonuclease family protein [Escherichia coli RN587/1] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|311746711|ref|ZP_07720496.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1] gi|126578388|gb|EAZ82552.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1] Length = 456 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 14/191 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M + DIETTG + I EI A+ + D K F+ + N ++ P + L GI Sbjct: 1 MEFAIVDIETTGGAASTCGITEI-AILIHDGEKVIEEFESLI--NPEQDIPTYITGLTGI 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRII 124 + + D P+F + + WD + + ++AH+ FD GF+ A I ++ +D + Sbjct: 58 DNSMVSDAPTFEELSDKLWDLLHGRV--FVAHSVNFDYGFVRACFNAIGREFKVDK---L 112 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 T+ +AR+ P S L +C+ I I R H A+ D+ + ++ +M+ SQ F Sbjct: 113 CTVRLARKIIPGLSSYSLGRICETQKIPILAR--HRAMGDARATAILFDQMLKKDSQTVF 170 Query: 184 -GFKTNEDRFF 193 K N F Sbjct: 171 QALKKNSGEAF 181 >gi|220915934|ref|YP_002491238.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter dehalogenans 2CP-1] gi|219953788|gb|ACL64172.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter dehalogenans 2CP-1] Length = 207 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 16/176 (9%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS--PEALKLHGITDE 68 D+ET GLD + D I+ +G V + S + +F + P + P ++ H + Sbjct: 22 LDLETGGLDPRRDAILAVGMVPVRQGSVRLGESFSTLIRPEAAAAAIDPGSILAHQLVPH 81 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + PS S+ ++ D + A + H A DV F+ +R + +P ++DT++ Sbjct: 82 DVATAPSLDSVLADV-DLRAREGA-LLVHQASLDVAFLKRAYRRCGRRWPEPP-VVDTVA 138 Query: 129 I----ARRKH------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + A+R+ PS DLN L R + +H AL D+ +++++ + Sbjct: 139 LLIKAAKRQRFVNPDAPSMEPDLNLLAARRQRGLPDYGQHDALTDAVATAELFLVL 194 >gi|309702068|emb|CBJ01382.1| exodeoxyribonuclease X [Escherichia coli ETEC H10407] gi|323937102|gb|EGB33382.1| exonuclease [Escherichia coli E1520] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD +R+ P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFD--------RRVL--PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|304312854|ref|YP_003812452.1| Ribonuclease T [gamma proteobacterium HdN1] gi|301798587|emb|CBL46817.1| Ribonuclease T [gamma proteobacterium HdN1] Length = 223 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEA-LKLHG 64 +V D+ET G +S+ D ++EI A+ L + K RT + P N +A L+ G Sbjct: 19 VVIDVETGGFNSQTDALLEIAAISLHFDENGWLKKYRTSHFHVSPFAGANIEKASLEFTG 78 Query: 65 ITD-----EFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQR--IN 114 I + +K + + IF E + + A + HNA FD F+ A QR I Sbjct: 79 IDPWHPFRNAVDEKVALTEIFGEVRKALSNLECKRAILVGHNAFFDHQFLFAATQRAAIK 138 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++ + L C GI+ + + H AL D+ +D++ + Sbjct: 139 RNPFHPFSCFDTATLGGVA--LGQTVLARACIAAGISFNQKEAHSALYDADKTADLFCHI 196 Query: 175 M 175 + Sbjct: 197 V 197 >gi|296273686|ref|YP_003656317.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM 7299] gi|296097860|gb|ADG93810.1| DNA polymerase III, epsilon subunit [Arcobacter nitrofigilis DSM 7299] Length = 279 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 13/178 (7%) Query: 3 RKNKMRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 ++N+++ VF DIET G + ++IEIGAV+L K + K+ P Sbjct: 70 KENQIKDQVFCIVDIETNGSNVNKGQVIEIGAVKL----KNGEIIDSYESLVYAKDVPPY 125 Query: 60 LK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ++ + IT LKD P ++ EF F ++ ++AH+ KFD FI+ ++ N L Sbjct: 126 IQEVTNITPSMLKDAPVLKTVLEEFKIFL--EDDVFVAHDIKFDYRFISESFKKYNLGEL 183 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174 +R + T+ +++R + R L+ L I I HR+ AL +++L + K+ Sbjct: 184 H-NRKLCTIDLSKRTIEAQRYGLDFLKDLLHIDIDTQHRAYSDALSTTYILKESLSKL 240 >gi|187734182|ref|YP_001880647.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94] gi|187431174|gb|ACD10448.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|331663335|ref|ZP_08364245.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA143] gi|331059134|gb|EGI31111.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA143] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|229822935|ref|ZP_04449005.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271] gi|229787748|gb|EEP23862.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271] Length = 828 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 100/197 (50%), Gaps = 14/197 (7%) Query: 2 IRKNKMRKIVFDIETTG--LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 ++ +R V D+ETTG LD + D+II+IGAV L++ + + L P +N P Sbjct: 1 MKAKGIRIAVVDLETTGSHLD-QGDQIIQIGAV-LIEDGQVLAQHSMLLNP--ERNIPTH 56 Query: 60 LK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + + GI + ++D P+FS + +++ ++ ++AHN FD+ F+ A+ D Sbjct: 57 ITAITGIQSDQVQDAPTFSQVAGLWYERL--KDCFFVAHNLGFDLTFLQAKFAEQGLDFQ 114 Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 P+ +DT+ +A+ P + +L L + +G+ + H AL D+ + + + + Sbjct: 115 PPA--LDTVQLAKIFLPQAPGFNLQDLSQFFGLNF--QDAHDALGDARMTAHLLDVLAHQ 170 Query: 178 GSQINFGFKTNEDRFFK 194 + +++G K FK Sbjct: 171 AADLDYGTKLALQPIFK 187 >gi|332299738|ref|YP_004441659.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas asaccharolytica DSM 20707] gi|332176801|gb|AEE12491.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas asaccharolytica DSM 20707] Length = 255 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67 +VFDIE TGLD NDRIIE+ ++L+ D + RT + N P E+ +HGITD Sbjct: 10 VVFDIEATGLDITNDRIIELTILKLMPDGERIVRTRRF----NPEMPIPAESTAIHGITD 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIID 125 E ++D P F + + + + +N+ +FD+ + E R + L + ID Sbjct: 66 EDVRDCPPFRACAKSLAELID--GCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLSRQHID 123 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +I + P + + C R H HGA D+ DV + + Sbjct: 124 VQTIFHKMEPRTLEGAVRFYCHR-----EHIGAHGAEADTIATLDVLLAQL 169 >gi|304382373|ref|ZP_07364875.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973] gi|304336490|gb|EFM02724.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973] Length = 284 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGLD NDRII++ +++L R +F+ P R E ++L GITD+ Sbjct: 10 IVFDLETTGLDLVNDRIIQLSYIKVLPDGTELRK-NIFINPE-RSIPKEVVELTGITDDD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDTL 127 +K+ P+F + + + F + ++ +N+ FD+ + E R D R+ID Sbjct: 68 VKEAPTFKEMAPDLNNEF--RGCDFAGYNSNHFDIPMLAEEFLRAGIDFDFSKCRLIDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 +I H R L + K Y Sbjct: 126 TIF---HKMERRHLAAAYKFY 143 >gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC 33331] Length = 346 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 10/186 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRII L + + P + P + +HG+T + L Sbjct: 34 VVDVETTGL-ARDDRIISAAVYRLDARGDVEDHWYTLVNP---ERDPGPVWIHGLTSDVL 89 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + +E + + +AHNA FD I E R R+ T+++A Sbjct: 90 EGAPLFPQVAAELSERLAGRVL--VAHNAAFDWSMIAREYARAAVTAPVEQRLC-TIALA 146 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + P + L SL +G+ H H AL D+ +L++ + + ++ E Sbjct: 147 KELRLPLPNHKLESLAAHFGVVQQH--AHHALDDARVLAEAFRPSLHAAAKGGVRLPLLE 204 Query: 190 DRFFKE 195 R E Sbjct: 205 CRPLTE 210 >gi|297568933|ref|YP_003690277.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus AHT2] gi|296924848|gb|ADH85658.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus AHT2] Length = 238 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD E TGL+ + D I+ IGAV++ + TF V++ P+ R ++ +H IT + Sbjct: 41 VVFDTELTGLNRQRDEIVSIGAVKIRNLQILVGETFHVYIKPS-RALPKDSTLIHRITPQ 99 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-----INKDPLDPSRI 123 ++ P +++ +F F + A + H DV F+N +R ++ LD R+ Sbjct: 100 QIEQAPQLATVLPDFISFCGQ--ALLVGHYVGLDVAFLNRACRRHYGAVVSNPCLDTMRL 157 Query: 124 IDTLS 128 T + Sbjct: 158 AQTYT 162 >gi|328957363|ref|YP_004374749.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4] gi|328673687|gb|AEB29733.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4] Length = 940 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V DIETTG + + DR+I+ G V L++ K F + P + P+ ++ L G++++ Sbjct: 12 VVDIETTGGNVTSGDRMIQFGCV-LIEDDKIVHRFATTVNP--LTSIPKQIEHLTGLSNK 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + + ++ ++ +AHN +FD F++ ELQR P ++ IDT+ Sbjct: 69 SVALAPYFEDVAATIYNLL--EDCIIVAHNIQFDYIFLSGELQRCGM-PALKNKGIDTVE 125 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A+ P+ S LN L ++ I H + H A D+ + +++++++ Sbjct: 126 LAQILLPTESSYRLNDLVSKFN--IEHTNPHQADSDAAVTAELFLEL 170 >gi|160902928|ref|YP_001568509.1| DNA polymerase III PolC [Petrotoga mobilis SJ95] gi|160360572|gb|ABX32186.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95] Length = 1388 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 85/166 (51%), Gaps = 7/166 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL+ + IIEIGAV++ + ++ F + P + S GIT++ Sbjct: 383 VVFDLETTGLEPAMNEIIEIGAVKIKNMKIVSK-FHRLVKPR-KPVSNFTSNFTGITNQM 440 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ + + +F F + A +AHNA FD FI ++R+ + + + IDT+++ Sbjct: 441 LEVEKPIEEVLPQFLSFI--EGAVLVAHNAIFDYRFIREWVRRVYNEHFEQTY-IDTVAL 497 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ L + + + + H A D+++ + V++K++ Sbjct: 498 SKSLLTLKSYGLAKVVEE--LKLGSFEHHRAHEDANITALVFLKLI 541 >gi|144901019|emb|CAM77883.1| DNA polymerase III epsilon chain-like protein [Magnetospirillum gryphiswaldense MSR-1] Length = 619 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 11/170 (6%) Query: 10 IVFDIETTGL-DSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + FD ETTGL + DR+I++GAV + + +F+ + P G +++ HGI++ Sbjct: 431 VAFDCETTGLRPDQGDRLIQVGAVRIGQGRVLSGESFERLIDP-GIPIPAQSMAYHGISN 489 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +K KP + + +F + HN FD+ F++A P ++DT+ Sbjct: 490 DMVKGKPPLAVVLPQF--AAFAGASALAGHNVAFDLKFLHAAQGETGIALRQP--VLDTM 545 Query: 128 SIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMV 176 +A P L ++ R G+ + HRS AL D+ + +++ +++ Sbjct: 546 ILAALLDPGYDLSLEAVAGRLGVPPLPHRS---ALSDALVTAEILARLIA 592 >gi|291531228|emb|CBK96813.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium siraeum 70/3] Length = 458 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 13/173 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPE--ALKLHGIT 66 +V+D+ETTGL+S+ +I+IGAV+++D ++TF+ + P K S K+ GIT Sbjct: 272 VVYDLETTGLNSEFHAVIQIGAVKVVDGVVDESQTFEELVNPKYSKVSVSDNITKITGIT 331 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE K+ + EF F + +NA FD F+ E + + + ++ D Sbjct: 332 DEEAKNARQVWEVIPEFVKFIGDDTLAGF-NNAAFDSKFL--ERAGRHSNIIITNKQFDI 388 Query: 127 LSIARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + A+R ++LN+ + +G I + H AL D+ + VYIK+ Sbjct: 389 MKYAKRIKKKCNLEINGDELNNYAEYFG--IKNEKAHTALSDAITTAKVYIKL 439 >gi|157161311|ref|YP_001458629.1| exodeoxyribonuclease X [Escherichia coli HS] gi|157066991|gb|ABV06246.1| exodeoxyribonuclease X [Escherichia coli HS] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|256831880|ref|YP_003160607.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans DSM 20603] gi|256685411|gb|ACV08304.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans DSM 20603] Length = 238 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 21/154 (13%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTG+D+ +DR++ L+ + T +L G EA ++HGIT E+ Sbjct: 11 FDTETTGVDTAHDRVV---TAALVLRTGEVTTVDTWLIDPGVPIPDEAARIHGITTEYAV 67 Query: 72 DKP-----SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--------KDPL 118 + + S I D + Q +A NA FDV + AEL R P+ Sbjct: 68 EHGANPVDALSVIADRIVDHMS-QGWALVAFNATFDVCIVEAELARHGLPTLAQRLGGPV 126 Query: 119 DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGI 150 P +ID L + R ++ + L +LC YG+ Sbjct: 127 AP--VIDPLVLDRAVDRYRRGQRKLANLCSEYGV 158 >gi|90022074|ref|YP_527901.1| ribonuclease T [Saccharophagus degradans 2-40] gi|89951674|gb|ABD81689.1| RNAse T [Saccharophagus degradans 2-40] Length = 231 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64 ++ D+ET G +S D ++EI AV L +D + TF + P G AL G Sbjct: 26 VIVDVETGGFNSHTDALLEIAAVTLRMDEDGVLHRHETFDFHVDPFEGANIEQSALDFTG 85 Query: 65 I---TDE--FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I +D+ + + + + IF E A +AHNA FD+GF+NA R + Sbjct: 86 IDLDSDDRCAVPEDIAINEIFRSVRKAVKENGCNRAVMVAHNAHFDLGFVNAASNRCDVK 145 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C+ I S+R H A D+ +D++ + Sbjct: 146 RNPFHPFSCFDTATLSGLAFGHTV--LARACQLAKIEFSNREAHSAAYDAEKTADLFCTI 203 Query: 175 M 175 + Sbjct: 204 V 204 >gi|31794883|ref|NP_857376.1| DNA polymerase III subunit epsilon [Mycobacterium bovis AF2122/97] gi|121639627|ref|YP_979851.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224992123|ref|YP_002646812.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str. Tokyo 172] gi|260184632|ref|ZP_05762106.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis CPHL_A] gi|289445310|ref|ZP_06435054.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis CPHL_A] gi|31620481|emb|CAD95924.1| PUTATIVE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium bovis AF2122/97] gi|121495275|emb|CAL73761.1| Putative dna polymerase III (epsilon subunit) dnaQ [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224775238|dbj|BAH28044.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str. Tokyo 172] gi|289418268|gb|EFD15469.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis CPHL_A] Length = 329 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 D+P F+ I E D + +AHN FD F+ AE + + P+D ++ T+ + Sbjct: 75 DDQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L +G + + H A D+ +L+ + + Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDARVLTGILAAAL 175 >gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis MA-4680] gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces avermitilis MA-4680] Length = 325 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 10/162 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRII L + + + P + P + +HG+T + L Sbjct: 24 VVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTMVNP---ERDPGPVWIHGLTSDVL 79 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F I +EF ++ +AHNA FD I E R R+ T++++ Sbjct: 80 EGAPLFEDIAAEFASRLADRV--LVAHNAVFDWSMIAREYARAKSQAPVRQRLC-TIALS 136 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + P + L SL +G+ + R+ H AL D+ +L++ + Sbjct: 137 KELGLPLPNHKLESLAAHFGV-VQQRAHH-ALDDARVLAEAF 176 >gi|283785581|ref|YP_003365446.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168] gi|282949035|emb|CBG88638.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168] Length = 220 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVVD-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP I ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDIIPHYY------GSEWYVAHNASFDSRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 +RR P + +L K + + + H AL D ++ + + I +M Sbjct: 103 SRRLWPGIKYSNMALYKSRKLNVQTPAGLHHHRALYDCYITAALLIDIM 151 >gi|215424954|ref|ZP_03422873.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T92] gi|289748229|ref|ZP_06507607.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T92] gi|289688816|gb|EFD56245.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T92] Length = 329 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 D+P F+ I E D + +AHN FD F+ AE + + P+D ++ T+ + Sbjct: 75 DDQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L +G + + H A D+ +L+ + + Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDARVLTGILAAAL 175 >gi|182417780|ref|ZP_02949096.1| putative exonuclease [Clostridium butyricum 5521] gi|237667945|ref|ZP_04527929.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378504|gb|EDT76035.1| putative exonuclease [Clostridium butyricum 5521] gi|237656293|gb|EEP53849.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum E4 str. BoNT E BL5262] Length = 975 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 11/138 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I DIETTGLD + IIEIGA++ D + T TF+ + P GR G++ E Sbjct: 13 IYLDIETTGLDETSSEIIEIGAIKFKDNTIT--TFETLIRPRGRVPIGIYNLCTGLSKEE 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L PS ++ F ++ I HN F+ F L +I + I+D++ + Sbjct: 71 LYSAPSLGNVRESLSQFL--EDLPLICHNGNFEKKFFRYHLPQIK------NTIMDSMEL 122 Query: 130 ARRKHPSSRN-DLNSLCK 146 A P + +LN+L K Sbjct: 123 AAILEPYHKEYNLNALMK 140 >gi|283832758|ref|ZP_06352499.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220] gi|291072441|gb|EFE10550.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220] Length = 220 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVVD-GKIVNPMSNLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP I +++ ++W +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDIIPQYY------GSDWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 +RR P + +L K +++ + H AL D ++ + + I +M Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPAGLHHHRALYDCYITAALLIDIM 151 >gi|288932698|ref|YP_003436758.1| DNA polymerase III subunit epsilon [Ferroglobus placidus DSM 10642] gi|288894946|gb|ADC66483.1| DNA polymerase III, epsilon subunit [Ferroglobus placidus DSM 10642] Length = 200 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 88/185 (47%), Gaps = 14/185 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL+ K D II I + +D K + + R+ +++K HGIT + Sbjct: 8 VVDVETTGLNVKKDEIISIAIIP-MDGLKILFSEAYYRILKPRRFKIDSVKYHGITPRMV 66 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P+F + E + NE+ + ++ D+ F+ + + + + +D + Sbjct: 67 EEAPTFCEVKEEILEKLNERI--IVGYSINLDIEFLKKSFKEC--EVVFECKYVDIADVE 122 Query: 131 R---RKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + R D L L K+YG+ +++R H AL D+++ + ++ ++ + +G Sbjct: 123 KLVGRLFGDYMKDVTLEDLAKKYGVDVAYR--HSALSDAYITAQIFQMQLL--RLLKYGL 178 Query: 186 KTNED 190 + ED Sbjct: 179 RKFED 183 >gi|154496866|ref|ZP_02035562.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC 29799] gi|150273824|gb|EDN00937.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC 29799] Length = 191 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 10/175 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I FD+ET + NDR+ IG + +++ + + + P R + + L GIT Sbjct: 4 RYIAFDVETP--NYANDRMSAIG-ITVVEAGEIAGEYYTLVNPEQRFDRFN-IALTGITP 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + DKP+F ++ E + + IAHNA FD+ + L+ R T Sbjct: 60 EMVADKPTFPELWREIGPLMD--SGLLIAHNAPFDMSVLAKCLRDYGICWHPTVRYACTC 117 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++RR P N LN+L G+ + H H A DS ++ + + GG+ + Sbjct: 118 QMSRRLLPQLPNHKLNTLSDYLGLELDH---HHAGSDSMACGEILLYHLRGGASV 169 >gi|27904678|ref|NP_777804.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29611836|sp|P59497|RNT_BUCBP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|27904075|gb|AAO26909.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 217 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET G + + D I+EI + L + + P G + +A++ HG Sbjct: 20 VVIDIETAGFNPETDAILEIAIITLKMNEFGLLEKEHLLHFHIQPFKGSRIDKKAIEFHG 79 Query: 65 ITDEF------LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113 I D F + + + SIF+ N +AHNA FD F+ A + R I Sbjct: 80 I-DPFSPLRRAISEYEALYSIFNLIHKGIKSNNCTKSIIVAHNAIFDYNFLTAAITRTKI 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P I DT +++ + L CK G+T + H AL D+ ++++ K Sbjct: 139 KNNPFHSFVIFDTATLSGLA--VGQTVLARACKAIGLTFDNNQAHSALYDTQQTANLFCK 196 Query: 174 MM 175 ++ Sbjct: 197 IV 198 >gi|188589009|ref|YP_001921284.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43] gi|188499290|gb|ACD52426.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43] Length = 974 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 16/158 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK--LHGITD 67 I DIETTGLD N IIEIGAV++ + S T T++V + P G N P ++ G+ + Sbjct: 12 IYLDIETTGLDENNCEIIEIGAVKIKNLSVT--TYEVLIRPKG--NVPVSIYKLCQGLKE 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L + I E F ++ I HN F+ F++ + I + D + L Sbjct: 68 EDLMNSRHLEDIKKELLVFL--EDLPLICHNGGFERKFLSYHIPEIKNEIFDSMELSAIL 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDS 164 R+++ +L+SL K ITI + + H L DS Sbjct: 126 EPWRKEY-----NLDSLIK--SITILDKDEFHRGLEDS 156 >gi|301155716|emb|CBW15184.1| ribonuclease T (RNase T) [Haemophilus parainfluenzae T3T1] Length = 229 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 20/190 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L +D + + ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGNLQPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFF--NEQNAEW-----IAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + +++AE +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R + ++P P + DT ++A + L C+ I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTATLAGFMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMM 175 ++++ M+ Sbjct: 192 RTAELFCYMV 201 >gi|301645642|ref|ZP_07245570.1| exonuclease [Escherichia coli MS 146-1] gi|301076071|gb|EFK90877.1| exonuclease [Escherichia coli MS 146-1] Length = 220 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNVALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|157374989|ref|YP_001473589.1| ribonuclease T [Shewanella sediminis HAW-EB3] gi|157317363|gb|ABV36461.1| ribonuclease T [Shewanella sediminis HAW-EB3] Length = 223 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI AV +L ++T + P G PEAL Sbjct: 20 VVIDVETAGFNAQTDALLEI-AVTMLKMDDEGVLGLDKTLHYHIEPFEGANLEPEALAFT 78 Query: 64 GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113 GI T+ + +K +F IF E +AHNA FD GF++ ++R + Sbjct: 79 GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSKAVERNGL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++A L C GI + H AL D+ ++++ Sbjct: 139 KRTPFHPFATFDTATLAGLA--IGHTVLAKACSIAGIPFDNNEAHSALYDTERTAELFCL 196 Query: 174 MM 175 ++ Sbjct: 197 IV 198 >gi|253773201|ref|YP_003036032.1| exodeoxyribonuclease X [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161904|ref|YP_003045012.1| exodeoxyribonuclease X [Escherichia coli B str. REL606] gi|297519020|ref|ZP_06937406.1| exodeoxyribonuclease X [Escherichia coli OP50] gi|242377565|emb|CAQ32320.1| exonuclease X [Escherichia coli BL21(DE3)] gi|253324245|gb|ACT28847.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973805|gb|ACT39476.1| exodeoxyribonuclease X [Escherichia coli B str. REL606] gi|253977999|gb|ACT43669.1| exodeoxyribonuclease X [Escherichia coli BL21(DE3)] Length = 220 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAIAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|219559793|ref|ZP_03538869.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T17] gi|289571955|ref|ZP_06452182.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T17] gi|289545709|gb|EFD49357.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T17] Length = 284 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 11/180 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 D+P F+ I E D + +AHN FD F+ AE + + P+D ++ T+ + Sbjct: 75 DDQPQFADIAGEVVDVLRGRTL--VAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 ARR N L +L +G + + H A D+ +L+ + + +++ + Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDARVLTGILAAALESARELDVWLPVH 188 >gi|329903276|ref|ZP_08273408.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548440|gb|EGF33116.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480] Length = 216 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 15/186 (8%) Query: 15 ETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73 ETTG+ + DR+ E+ A+ ++ +R + C + SP +L GIT + Sbjct: 5 ETTGMSPALGDRVTEVAALRIVGGVVVDRFVSLINC--DVRISPFISQLTGITQAMVDRA 62 Query: 74 PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK 133 P + E F AHN FD F+ AE R+ P + +I ++ ++RR Sbjct: 63 PPVEQVMPELVRFIGSD--ALAAHNVSFDEKFLLAESARLGIVPAH-AGVICSVKLSRRV 119 Query: 134 HPSSRN-DLNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 P R+ L +L GI +HR++ A + S L+ ++I +G ++G + + Sbjct: 120 FPGLRSYALGALANSLGIRFKGTAHRAEADAEVASALM--LHIAAHLGD---HYGIREVD 174 Query: 190 DRFFKE 195 RF ++ Sbjct: 175 PRFLQQ 180 >gi|289755840|ref|ZP_06515218.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon [Mycobacterium tuberculosis EAS054] gi|289696427|gb|EFD63856.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon [Mycobacterium tuberculosis EAS054] Length = 330 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 D+P F+ I E D + +AHN FD F+ AE + + P+D ++ T+ + Sbjct: 75 DDQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L +G + + H A D+ +L+ + + Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDARVLTGILAAAL 175 >gi|282849748|ref|ZP_06259132.1| UvrD/REP helicase [Veillonella parvula ATCC 17745] gi|282580685|gb|EFB86084.1| UvrD/REP helicase [Veillonella parvula ATCC 17745] Length = 862 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+E+TG D+ DRII+I A+ + + + F+ F+ P E ++HG +D + Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERFINPGIPVGQSE--EVHGFSDAY 552 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L++ +I + + F+ +NA + HN +DV EL R N + I DTL I Sbjct: 553 LQEHGEEPAIVLQAFKEFS-KNAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLDI 611 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 RR +P+ N L L ++ I H H A+ D Sbjct: 612 YRRFYPNLPNHKLGFLASKF--PIHHEPTHNAMDD 644 >gi|29374711|ref|NP_813863.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583] gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22] gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583] gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22] gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecalis TX0309B] gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecalis TX0309A] Length = 289 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 16/169 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FDIETTGLD D +I+I A +D + + F + N E KL GIT++ Sbjct: 9 IAFDIETTGLDFHQDAVIQISAARYVDGIEVDY-FDTLV--NSDYIPDEITKLTGITNDQ 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDT-L 127 + + P+ + +D+ + + HN K FD F+ A+ I + I DT Sbjct: 66 VLNAPTLDEVMPYLFDYLGD--TILVGHNIKSFDFPFLKAKGYNI----AEGHEIYDTRY 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175 A RKH + N L +L +GI ISH AL D + + V+++++ Sbjct: 120 FAATRKHGAVNNQLTTLKLLFGIDAISHN----ALNDVRISAIVFMELL 164 >gi|260198755|ref|ZP_05766246.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T46] gi|289441146|ref|ZP_06430890.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T46] gi|289414065|gb|EFD11305.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T46] Length = 319 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 D+P F+ I E D + +AHN FD F+ AE + + P+D ++ T+ + Sbjct: 75 DDQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L +G + + H A D+ +L+ + + Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDARVLTGILAAAL 175 >gi|239945175|ref|ZP_04697112.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] gi|239991636|ref|ZP_04712300.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 11379] gi|291448639|ref|ZP_06588029.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998] gi|291351586|gb|EFE78490.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998] Length = 237 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 13/155 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDE 68 + FD+ETTG D ++DRI+ V LD T + +L G +A +HGI TD Sbjct: 9 VGFDLETTGTDVESDRIVTAALVR-LDPDGTVAEQRTWLLDPGVVIPEQASAIHGIGTDH 67 Query: 69 FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD------ 119 K +S E E + + NA++D+ ++ E +R ++ Sbjct: 68 ARKHGTRAASAVEEIAHAVAEVLRSDVPLVVMNARYDLSLLDRECRRYGLPSVEERVDGA 127 Query: 120 PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 PS +ID L I + K+ + L +LC YG+T+ Sbjct: 128 PSPVIDPLVIDKHVDKYRKGKRALQALCDHYGVTL 162 >gi|114321417|ref|YP_743100.1| ribonuclease T [Alkalilimnicola ehrlichii MLHE-1] gi|114227811|gb|ABI57610.1| RNAse T [Alkalilimnicola ehrlichii MLHE-1] Length = 216 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 23/184 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD-----YSKTNRTFQV--FLCPNGRKNSPEALK 61 +V D+ET GL++ D +++I AV L +D Y T V F G P+AL+ Sbjct: 25 VVVDVETGGLNAATDALLQIAAVVLRMDENGRLYPAATHTCHVKPF---EGANIDPKALE 81 Query: 62 LHGITDEF-----LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR- 112 L+GI + L + + +F + A I HN+ FD+GF+NA +QR Sbjct: 82 LNGIDPDHPLRMALPEDEALKKVFRPIRQEVRQTGCNRAVLIGHNSFFDLGFLNAAVQRC 141 Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I ++P P DT ++A + + L G ++ H A+ D+ +D++ Sbjct: 142 GIKRNPFHPFTSFDTATLAGLAY--GQTVLAKALVASGEEWDGKAAHSAIYDAEKTADLF 199 Query: 172 IKMM 175 ++ Sbjct: 200 CGIV 203 >gi|15598724|ref|NP_252218.1| ribonuclease T [Pseudomonas aeruginosa PAO1] gi|107103040|ref|ZP_01366958.1| hypothetical protein PaerPA_01004109 [Pseudomonas aeruginosa PACS2] gi|116051527|ref|YP_789637.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14] gi|218890245|ref|YP_002439109.1| ribonuclease T [Pseudomonas aeruginosa LESB58] gi|254242188|ref|ZP_04935510.1| ribonuclease T [Pseudomonas aeruginosa 2192] gi|296387969|ref|ZP_06877444.1| ribonuclease T [Pseudomonas aeruginosa PAb1] gi|313108873|ref|ZP_07794856.1| ribonuclease T [Pseudomonas aeruginosa 39016] gi|14548235|sp|Q9HY82|RNT_PSEAE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|122260667|sp|Q02QZ9|RNT_PSEAB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|9949677|gb|AAG06916.1|AE004773_5 ribonuclease T [Pseudomonas aeruginosa PAO1] gi|115586748|gb|ABJ12763.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14] gi|126195566|gb|EAZ59629.1| ribonuclease T [Pseudomonas aeruginosa 2192] gi|218770468|emb|CAW26233.1| ribonuclease T [Pseudomonas aeruginosa LESB58] gi|310881358|gb|EFQ39952.1| ribonuclease T [Pseudomonas aeruginosa 39016] Length = 224 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A + +D + T+ + P G P AL+ G Sbjct: 32 VVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTG 91 Query: 65 ITDEF-----LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQR--IN 114 I + ++++ + + IF + A + HN+ FD+GF+NA + R I Sbjct: 92 IKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIK 151 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ G+ +R H A D+ ++++ + Sbjct: 152 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGI 209 Query: 175 M 175 + Sbjct: 210 V 210 >gi|315127531|ref|YP_004069534.1| DNA polymerase, exonuclease activity [Pseudoalteromonas sp. SM9913] gi|315016045|gb|ADT69383.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas sp. SM9913] Length = 207 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 16/186 (8%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K R +V D+E TGLD K I+ + V L+D + L K+ ++ HGI Sbjct: 22 KQRYLVIDLELTGLDPKQHEIVSVAWV-LIDNECIKNSLSQHLVNKEVKSLEQSPVFHGI 80 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + + S SI + F+ + + HNA D GF+ L+ P IID Sbjct: 81 STDSVAQGQSLQSIITSLSAHFS--DCILVFHNAMLDWGFLKLALKNAGITQ-RPKLIID 137 Query: 126 TLSIARRKHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 TL I +++ +D LN KRY + H H AL D+ +++ ++ Sbjct: 138 TLQIEKKRLLKHSSDIKLDDLTLNECRKRYDLPSYH--CHHALTDAQATAEL---LLAQC 192 Query: 179 SQINFG 184 QI+ G Sbjct: 193 HQISAG 198 >gi|215432688|ref|ZP_03430607.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis EAS054] Length = 347 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 D+P F+ I E D + +AHN FD F+ AE + + P+D ++ T+ + Sbjct: 75 DDQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L +G + + H A D+ +L+ + + Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDARVLTGILAAAL 175 >gi|148656137|ref|YP_001276342.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1] gi|148568247|gb|ABQ90392.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1] Length = 233 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 29/187 (15%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL+ + D ++ IG V++ D R + + P+ +PEA+++HG+ + Sbjct: 40 VIDVETTGLNPRRDALLAIGLVDIDDGRIRMDQRWYTLVRPPDDAPVNPEAIRVHGLLPQ 99 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTL 127 ++ P + + + H A D+GF+ L+R+ + DP P+ IDT Sbjct: 100 DVEQAPPPGDVLPVLLRRLTGR--VLVVHVADIDIGFLRQALRRLYQVDPRGPA--IDTA 155 Query: 128 SIA------------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A + P+ + L +L + G+ + ++H AL D+ + V++ Sbjct: 156 RLAWHFQRNQRLIDGADQEPALQ--LRALAESAGLPVY--AEHNALNDALTTAQVFL--- 208 Query: 176 VGGSQIN 182 +QIN Sbjct: 209 ---AQIN 212 >gi|317154702|ref|YP_004122750.1| exonuclease RNase T and DNA polymerase III [Desulfovibrio aespoeensis Aspo-2] gi|316944953|gb|ADU64004.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio aespoeensis Aspo-2] Length = 179 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 16/180 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + D ET D+K D +G V + R +++ P R+ +P +++HGI Sbjct: 9 RFVAIDFETA--DAKRDSACAVGLVVVDRGEIVARDYRLIR-PPRRRFNPFCVQVHGIHW 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINK-DPLDPSRIID 125 E + D+P+F ++ + F + A++ +AHNA FD + A + P+ P + Sbjct: 66 EDVADQPAFGELWPDLSPLF--EGADFLVAHNASFDKSVLAACCRESRCLPPVQP--FLC 121 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +AR N L ++C GIT++H H A D ++ ++ V G + N F Sbjct: 122 TVQLARTTWQLPSNKLPNVCCHLGITLTH---HHAASD----AEACARIAVSGLRENPAF 174 >gi|26108511|gb|AAN80713.1|AE016761_288 Exodeoxyribonuclease X [Escherichia coli CFT073] Length = 238 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 22 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 76 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD +R+ P P I T+ + Sbjct: 77 ADKPWIEDVIPHYY------GSEWYVAHNASFD--------RRVL--PEMPGEWICTMKL 120 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 121 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 169 >gi|313681469|ref|YP_004059207.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense DSM 16994] gi|313154329|gb|ADR33007.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 247 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 17/128 (13%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 + I+ D ETTG +DRII++G + L + +V+ +C S A+++HGI Sbjct: 3 KYILLDTETTGA-GDDDRIIQLGYMVL-----DGKNVEVYNEMCSTEVAISYGAMEVHGI 56 Query: 66 TDEFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 T E ++ KPS +S F + + N I HNA FD+G + E + R+ Sbjct: 57 TPEMIEGKPSCRETSAFQKLCELNTSDNV-LIIHNAPFDLGMLTKE------NFSSQMRL 109 Query: 124 IDTLSIAR 131 IDTL AR Sbjct: 110 IDTLRCAR 117 >gi|86130881|ref|ZP_01049480.1| exonuclease [Dokdonia donghaensis MED134] gi|85818292|gb|EAQ39452.1| exonuclease [Dokdonia donghaensis MED134] Length = 229 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 13/175 (7%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +VFD ETTGLD K DRI+ +G V ++ + T ++FL + +P++ ++HGI Sbjct: 45 RFVVFDTETTGLDYKKDRILSLGGVAVVGNQVIVADTLELFLKQDFY--NPDSAQIHGIL 102 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + K + ++ DF + H+ FDV +N L+R L ++ Sbjct: 103 KQGNYLKVNEKEAIAQCLDFIGTD--ILVGHHVGFDVAVVNQSLKRAGLGRLKNRQLDTE 160 Query: 127 LSIARRKHPSS------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R HP + R L+ L + I + R H A DS + + +IK++ Sbjct: 161 ILYKRLVHPVNRPLQDKRYTLDELAEALKIPLHDR--HTAAGDSLITALAFIKIV 213 >gi|238782582|ref|ZP_04626613.1| Ribonuclease T [Yersinia bercovieri ATCC 43970] gi|238796368|ref|ZP_04639877.1| Ribonuclease T [Yersinia mollaretii ATCC 43969] gi|238716509|gb|EEQ08490.1| Ribonuclease T [Yersinia bercovieri ATCC 43970] gi|238719813|gb|EEQ11620.1| Ribonuclease T [Yersinia mollaretii ATCC 43969] Length = 226 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 22/195 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF +Q A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ + ++ ++ Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCEL 208 Query: 175 M-----VGGSQINFG 184 + +GG I G Sbjct: 209 VNRWKKLGGWPIPAG 223 >gi|254524060|ref|ZP_05136115.1| ribonuclease T [Stenotrophomonas sp. SKA14] gi|219721651|gb|EED40176.1| ribonuclease T [Stenotrophomonas sp. SKA14] Length = 194 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 19/171 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ET G DS+ + ++EI AV + L Y + V + G + P++L++ Sbjct: 11 VVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHV-VPAEGLEIDPKSLEVT 69 Query: 64 GITDEFL-----KDKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI + ++K + IF + Q A + HNA FD+GF+NA + R Sbjct: 70 GIILDHPFRLAKEEKAALDHIFVPVRAAMKKYGCQRAILVGHNAHFDLGFVNAAVARTGH 129 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 ++P P + DT+++A + + L G+ H A+ D+ Sbjct: 130 KRNPFHPFSVFDTVTLAGIAY--GQTVLARAATAAGLGWDANEAHSAVYDT 178 >gi|323492356|ref|ZP_08097509.1| ribonuclease T [Vibrio brasiliensis LMG 20546] gi|323313403|gb|EGA66514.1| ribonuclease T [Vibrio brasiliensis LMG 20546] Length = 219 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 24/185 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +V D+ET G ++K D ++EI AV +L+ S + + F N K EAL Sbjct: 20 VVIDVETAGFNAKTDALLEICAVTLKMDENGDLVPASTIHFHVEPFEGANLEK---EALD 76 Query: 62 LHGITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFI--NAEL 110 +GI D F L+ + E + EQ A +AHNA FD F+ +E Sbjct: 77 FNGIRDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIMVAHNANFDHSFVMEASER 136 Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ + P P DT +++ + + L CK G+ ++ H AL D+ +++ Sbjct: 137 CKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNKEAHSALYDTQKTAEL 194 Query: 171 YIKMM 175 + ++ Sbjct: 195 FCGIV 199 >gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 484 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 8/148 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTG DRI EI L + T L R P +L GI DE + Sbjct: 45 IVDLETTGGSFDTDRITEIA---FLRFDGGTVTPYHSLVHPERPIPPFIRRLTGIGDETV 101 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P FS++ E + +AHN+KFD F+ R P+ + T+ ++ Sbjct: 102 AGAPPFSALAHELLPLL--RGCILLAHNSKFDYTFLRRAFARCGLPFAAPT--LCTVQLS 157 Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSK 157 RR +P ++ L S+ +R+GI + R + Sbjct: 158 RRLYPQFYKHSLESIIERHGIAAASRHR 185 >gi|325989695|ref|YP_004249394.1| DNA polymerase III polC-type [Mycoplasma suis KI3806] gi|323574780|emb|CBZ40440.1| DNA polymerase III, polC-type [Mycoplasma suis] Length = 1438 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 16/169 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 +FD+ETTGL+ D IIEI ++ + + + + C +K E + L IT+E L Sbjct: 396 IFDLETTGLNPIFDEIIEIFVLKYSSGTVIDHYYSLIRC--NKKLRKEIINLTHITEEKL 453 Query: 71 ----KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125 +DK ++ E DF + IAHN FD F+N+EL++ +PLD + I+D Sbjct: 454 NMSGRDK---LTVLQEVRDFVS--GTVLIAHNGIDFDFPFLNSELRKSGLEPLD-NPILD 507 Query: 126 TLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 TL + + ++ L ++ K+ I + + H + D+ L+ ++ Sbjct: 508 TLRLCKALEEGKKSKSYSLFAIAKKMSINVVEQELHNSEYDTRCLAKMW 556 >gi|302387397|ref|YP_003823219.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] gi|302198025|gb|ADL05596.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] Length = 222 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 24/202 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG+ D I+EI A+++ + + P G A +++GITD+ Sbjct: 19 VVFDLETTGISPAEDSILEISAIKVKGHEPVAE-LNTLVNP-GTHIPAGATRINGITDDM 76 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128 +K P + +F F + + HN + FD+ F+ Q + + P+ +DTL Sbjct: 77 VKAAPGLKEVLPDFLSFI--EGEILVGHNIQSFDLLFLYRAAQELFGKEV-PNDYVDTLF 133 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P R+ L + + I+ H AL D + Y +M G ++ Sbjct: 134 MAKTTLPQLGRHRLTDISAYF--HINTEGAHRALSDCVMNQKCYEQM---GKLVH----- 183 Query: 188 NEDRFFKEEKKTVPNI-SLLKR 208 KEE + P S+LKR Sbjct: 184 ------KEEAEICPQCGSVLKR 199 >gi|319440529|ref|ZP_07989685.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM 44702] Length = 214 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 21/182 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFL--CPNGRKNSPEALKLH 63 + D+ETTGLD K DR++ IG V L +D S +V L + E+ LH Sbjct: 27 LAVDVETTGLDPKRDRLLSIGWVPLDGRVIDLSGAR---EVILRDTVDHDAGVGESATLH 83 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 G+TD+ + E + + +AH A + GF++A +R + + Sbjct: 84 GLTDDTVATGIPAGEALGELLEAI--RGRALLAHFAVMETGFLDAVCRRELGLRFEVP-V 140 Query: 124 IDTLSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +DTL + RR +P + L + +RYG + + S H A+ D+ +++Y+ + Sbjct: 141 VDTLDLERRHMERMGTYPRGEDLRLPRVRQRYG--LPYYSNHRAVTDALACAELYLALTA 198 Query: 177 GG 178 GG Sbjct: 199 GG 200 >gi|325973260|ref|YP_004250324.1| DNA polymerase III PolC [Mycoplasma suis str. Illinois] gi|323651862|gb|ADX97944.1| DNA polymerase III, PolC [Mycoplasma suis str. Illinois] Length = 1438 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 16/169 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 +FD+ETTGL+ D IIEI ++ + + + + C +K E + L IT+E L Sbjct: 396 IFDLETTGLNPIFDEIIEIFVLKYSSGTVIDHYYSLIRC--NKKLRKEIINLTHITEEKL 453 Query: 71 ----KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125 +DK ++ E DF + IAHN FD F+N+EL++ +PLD + I+D Sbjct: 454 NMSGRDK---LTVLQEVRDFVS--GTVLIAHNGIDFDFPFLNSELRKSGLEPLD-NPILD 507 Query: 126 TLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 TL + + ++ L ++ K+ I + + H + D+ L+ ++ Sbjct: 508 TLRLCKALEEGKKSKSYSLFAIAKKMSINVVEQELHNSEYDTRCLAKMW 556 >gi|78777804|ref|YP_394119.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM 1251] gi|78498344|gb|ABB44884.1| Exonuclease [Sulfurimonas denitrificans DSM 1251] Length = 266 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 12/190 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIET G + +IIEI A+++ + R + C + +P ++ GI+ Sbjct: 73 IVDIETNGSKIEKHQIIEIAALKVKNGLVVERFESLVEC---HEINPHITEITGISTNET 129 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P+ + +F F +A +IAH+ KFD FI+ +Q+I PL +R + +LS+A Sbjct: 130 IDAPNLKKVMYDFRTFLG--DAVFIAHDVKFDYKFISLSMQKIGLPPL-LNRSLCSLSLA 186 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R S R L+ L + + + H A+ D + Y + + ++ KT ED Sbjct: 187 ERTIESYRYALSYLNTIFNLH-PEATHHRAMSD---VITTYELFKLSLNSVDKEVKTVED 242 Query: 191 --RFFKEEKK 198 RF KE K+ Sbjct: 243 LIRFSKEAKR 252 >gi|238792291|ref|ZP_04635926.1| Ribonuclease T [Yersinia intermedia ATCC 29909] gi|238728528|gb|EEQ20047.1| Ribonuclease T [Yersinia intermedia ATCC 29909] Length = 226 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 22/195 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF +Q A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ + ++ ++ Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCEL 208 Query: 175 M-----VGGSQINFG 184 + +GG I G Sbjct: 209 VNRWKKLGGWPIPAG 223 >gi|323961899|gb|EGB57498.1| exonuclease [Escherichia coli H489] Length = 220 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNIALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|149277808|ref|ZP_01883948.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39] gi|149231496|gb|EDM36875.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39] Length = 456 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 7/155 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V DIETTG + + I EI ++ + + + ++ + P G+ L GI+ Sbjct: 1 MLYAVVDIETTGGHASGNGITEI-SILVHNGHSIVQNYETLINP-GQYIPAHIEALTGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E ++ PSF+ + +E + +++ ++AHN FD FI +L + R + T Sbjct: 59 NEMVETAPSFNQVAAEVYQLLHDK--IFVAHNVNFDFSFIRHQLGVCGYEL--SCRKLCT 114 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGA 160 + ++R+ P R+ L LC I++++R + G Sbjct: 115 VRMSRKIIPGHRSYSLGKLCAALNISLNNRHRAGG 149 >gi|152988793|ref|YP_001347003.1| ribonuclease T [Pseudomonas aeruginosa PA7] gi|166200015|sp|A6V1R8|RNT_PSEA7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|150963951|gb|ABR85976.1| ribonuclease T [Pseudomonas aeruginosa PA7] Length = 224 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A + +D + T+ + P G P AL+ G Sbjct: 32 VVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTG 91 Query: 65 ITDEF-----LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQR--IN 114 I + ++++ + + IF + A + HN+ FD+GF+NA + R I Sbjct: 92 IKLDHPLRMAVQEEQALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIK 151 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ G+ +R H A D+ ++++ + Sbjct: 152 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGI 209 Query: 175 M 175 + Sbjct: 210 V 210 >gi|332969609|gb|EGK08627.1| DNA polymerase III, epsilon subunit [Kingella kingae ATCC 23330] Length = 463 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M ++ D+ETTG DRI E V L + + + +L ++ SP KL GI Sbjct: 26 MPVVILDLETTGGHFVQDRITE---VAFLRFWQGDVQRVSYLVNPQKEISPFVQKLTGID 82 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++ P+ + I + + A +IAHN++FD F E QR + + + Sbjct: 83 NQMVRRAPALAKILPDLLPLL--RGALFIAHNSRFDYTFWRNECQRAGVA--FAALTLCS 138 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R+ +P ++ L+S+ +R G+ + S+H A+ D L+ Sbjct: 139 VQLSRKLYPQYHKHSLDSIIERNGLIVP--SRHRAMADVDALAQ 180 >gi|228984721|ref|ZP_04144893.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774919|gb|EEM23313.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 934 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|229121184|ref|ZP_04250421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 95/8201] gi|228662303|gb|EEL17906.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 95/8201] Length = 934 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 31/231 (13%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGALLDSHL---------------- 166 T+ +A+ P++ + L L K++ + HR+ AL + L Sbjct: 119 TVELAQILLPTADSYKLRDLAKQHELEHDQPHRADSDALATAELFLQFLNEIEKLPLVTL 178 Query: 167 -----LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 LSDV+ + +N K + EE + NI+L KR+ L Sbjct: 179 QSLYELSDVFQSDIADVLSVNILKKMMHGKKAAEEYEVYRNIALRKRNYSL 229 >gi|92114250|ref|YP_574178.1| ribonuclease T [Chromohalobacter salexigens DSM 3043] gi|122419726|sp|Q1QVM9|RNT_CHRSD RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|91797340|gb|ABE59479.1| RNAse T [Chromohalobacter salexigens DSM 3043] Length = 221 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 19/183 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L ++ N T + P G AL G Sbjct: 20 VVVDLETGGFNAQRDALLEIAAVTLTMDAQGNLMPDDTHAFHVRPFEGANIEQAALDFTG 79 Query: 65 I-TDEFLKDKPSFSS------IFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR-- 112 I D L+ + + S IF A + HNA FD GF+NA ++R Sbjct: 80 IDLDSPLRQQVALSEHDALGEIFKPVRKAIKANQCTRAILVGHNAAFDQGFLNAAVERNG 139 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I ++P P DT ++ + + L C+ GI + S H A D+ ++++ Sbjct: 140 IKRNPFHPFSCFDTATLGGLVY--GQTVLARACRAAGIEFDNASAHSARYDTERTAELFC 197 Query: 173 KMM 175 M+ Sbjct: 198 AMV 200 >gi|218528419|ref|YP_002419235.1| exonuclease RNase T and DNA polymerase III [Methylobacterium chloromethanicum CM4] gi|218520722|gb|ACK81307.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium chloromethanicum CM4] Length = 297 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 10/170 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET + + D +G + ++ + R + P + SP +++HGI Sbjct: 1 MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVARRESRLIRPPQLRFSPGNIRVHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P+F + +EF + +AHNA FD+G + A L +P+ T Sbjct: 58 PADVRDAPTFPEVIAEF--LPDLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L IARR P + + L + R GI H H A D+ +++ + + Sbjct: 115 LQIARRVFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAAL 161 >gi|300727971|ref|ZP_07061349.1| exonuclease [Prevotella bryantii B14] gi|299774813|gb|EFI71427.1| exonuclease [Prevotella bryantii B14] Length = 279 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 11/142 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 I+FD+ETTGLD NDRII+I ++++ + R ++ N K P + L GIT+E Sbjct: 10 IIFDLETTGLDMVNDRIIQISYIKVMPNGEEKRGDELV---NPEKPIPAFVSDLTGITNE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDT 126 +K+ P+F I ++ D F + ++ N+ +FD+ + E R D R+ID Sbjct: 67 QVKNAPTFKEIGTKLADIF--KGCDFAGFNSNRFDIPLLCEEFLRAGIDFDFSKCRLIDA 124 Query: 127 LSIARRKHPSSRNDLNSLCKRY 148 +I H + +L + K Y Sbjct: 125 QTIF---HKMEKRNLAAAYKFY 143 >gi|206890301|ref|YP_002247886.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742239|gb|ACI21296.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 230 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 10/173 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D E TGL+ D II IGA+++ + K F + P+ +K E++ +H IT Sbjct: 25 VVVDTELTGLNEFRDNIIAIGAIKMKGRTIKIGDIFYRTVSPSTKKFRKESIMIHEITPS 84 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL- 127 L+ P I EF F +N + H D+ F+ E++ ++ +P IDTL Sbjct: 85 ELEKCPQIEPILREFIKF--SKNCLVVGHCVDIDLTFLKKEIRNNLREIFEPFS-IDTLL 141 Query: 128 ----SIARRKHPSSRNDLNSLCK-RYGITISHRSKHGALLDSHLLSDVYIKMM 175 I + PS ++ NSL + I + H AL D+ + + ++ +++ Sbjct: 142 IYKWLIKKEILPSDFSNKNSLEDIALSLDIEPKELHDALSDAFITAQIFQRLL 194 >gi|146281584|ref|YP_001171737.1| ribonuclease T [Pseudomonas stutzeri A1501] gi|145569789|gb|ABP78895.1| ribonuclease T [Pseudomonas stutzeri A1501] Length = 203 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKN-SPEALKL 62 +V D+E G + D ++EI AV + L Y + ++V P N P AL+ Sbjct: 11 VVIDVECGGFNCATDALLEIAAVTIGMDEQGLLYPQDTLFYRVE--PFAGANIEPAALEF 68 Query: 63 HGI-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR-- 112 GI D L+ ++ + + IF A + HN+ FD+GF+NA + R Sbjct: 69 TGIKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGFLNAAIARCE 128 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 129 IKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFC 186 Query: 173 KMM 175 ++ Sbjct: 187 GIV 189 >gi|117620471|ref|YP_857153.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561878|gb|ABK38826.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 240 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A L +D + ++ F + P G AL+ G Sbjct: 39 VVIDVETAGFNARTDALLEIAAYTLKMDEQGWLVPDQIFHFHVEPFEGANLEKAALEFTG 98 Query: 65 ITDEF------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--I 113 I D F + +K + + IF EQ+ A +AHNA FD GF+ A +R + Sbjct: 99 I-DPFNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAAAERAGL 157 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C+ I ++ H AL D+ ++++ Sbjct: 158 KRNPFHPFATFDTAALSGLA--LGQTVLAKACQSARIPFDNKEAHSALYDTERTTELFCH 215 Query: 174 MM 175 ++ Sbjct: 216 IV 217 >gi|70726458|ref|YP_253372.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435] gi|123660231|sp|Q4L6F9|DING_STAHJ RecName: Full=Probable ATP-dependent helicase dinG homolog gi|68447182|dbj|BAE04766.1| probable ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435] Length = 900 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 8/160 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG D II+IG + + +K + T+ + P L I D L Sbjct: 8 VVDLETTGNQLDYDEIIQIG-ITFVSNNKISGTYHS-MIRTDLDIPPFIQALTSIEDTML 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F I E + ++ ++AHN FD+ FI Q N D P +++DTL + Sbjct: 66 EQAPYFHEIAQEIYKQLKDR--VFVAHNVDFDLNFIKKAFQNCNID-FKPKKVLDTLELF 122 Query: 131 RRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 + +P+ ++ L+ L + + I + +HR+ A + L+ Sbjct: 123 KIAYPTDKSYQLSELAEAHDIPLDNAHRADEDATTTALLM 162 >gi|228982633|ref|ZP_04142892.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407] gi|228776816|gb|EEM25124.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407] Length = 286 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 13/159 (8%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67 +V DIETT K RI EIGAV+ +D ++ Q+ N P + KL GIT+ Sbjct: 20 VVLDIETTAFSPVKGGRITEIGAVKYIDGKVVDKYSQLI---NPEMKIPANITKLTGITN 76 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDPSRIIDT 126 + ++ KP + + F F + +AHNAKFD F+ +++ P + ++D+ Sbjct: 77 DMVQGKPVYGQVLPVFQQFID--GFLVVAHNAKFDWNRFLLFYFEKVGIHP--KNEVLDS 132 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 +++ + P+ + L+ C +G ++++H A D+ Sbjct: 133 VAVFQHFCPNKGKYKLDDFCTTFGYL--NKNRHRAYEDA 169 >gi|49477263|ref|YP_035758.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196033564|ref|ZP_03100976.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus W] gi|218902753|ref|YP_002450587.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH820] gi|49328819|gb|AAT59465.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195993998|gb|EDX57954.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus W] gi|218538657|gb|ACK91055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH820] Length = 934 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 31/231 (13%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGALLDSHL---------------- 166 T+ +A+ P++ + L L K++ + HR+ AL + L Sbjct: 119 TVELAQILLPTADSYKLRDLAKQHELEHDQPHRADSDALATAELFLQFLNEIEKLPLVTL 178 Query: 167 -----LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 LSDV+ + +N K + EE + NI+L KR+ L Sbjct: 179 QSLYELSDVFQSDIADVLSVNILKKMMHGKKAAEEYEVYRNIALRKRNYSL 229 >gi|251777997|ref|ZP_04820917.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082312|gb|EES48202.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 974 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 16/158 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK--LHGITD 67 I DIETTGLD N IIEIGAV++ + S T T++V + P G N P ++ G+ + Sbjct: 12 IYLDIETTGLDENNCEIIEIGAVKIKNLSVT--TYEVLIRPKG--NVPVSIYKLCQGLKE 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L + I E F ++ I HN F+ F++ + I D + L Sbjct: 68 EELMNSRHLEDIKKELLVFL--EDLPLICHNGGFERKFLSYHIPEIKNQIFDSMELSAIL 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDS 164 R+++ +L+SL K ITI + + H L DS Sbjct: 126 EPWRKEY-----NLDSLIK--SITILDKDEFHRGLEDS 156 >gi|228945241|ref|ZP_04107597.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814476|gb|EEM60741.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 934 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 31/231 (13%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT--ISHRSKHGALLDSHL---------------- 166 T+ +A+ P++ + L L K++ + HR+ AL + L Sbjct: 119 TVELAQILLPTADSYKLRDLAKQHELEHDQPHRADSDALATAELFLQFLNEIEKLPLVTL 178 Query: 167 -----LSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 LSDV+ + +N K + EE + NI+L KR+ L Sbjct: 179 QSLYELSDVFQSDIADVLSVNILKKMMHGKKAAEEYEVYRNIALRKRNYSL 229 >gi|42780745|ref|NP_977992.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987] gi|42736665|gb|AAS40600.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cereus ATCC 10987] Length = 934 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|327400242|ref|YP_004341081.1| DNA polymerase III subunit epsilon [Archaeoglobus veneficus SNP6] gi|327315750|gb|AEA46366.1| DNA polymerase III, epsilon subunit [Archaeoglobus veneficus SNP6] Length = 196 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 15/195 (7%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E+TGL+ K D I+ I + ++ S+ + F +K E++K HGI Sbjct: 8 RYSVIDVESTGLNPKKDEIVAIAVIPMVG-SRIILSDYFFSLVRPKKLKGESIKYHGIDI 66 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----RINKDPLDPSRI 123 + + P F SI S + I +FD + + R+ D +D S++ Sbjct: 67 KAVSKAPEFQSIASRLKHMLEDS---IIVSYTEFDAKILKSHFSRLKIRLELDCIDISQV 123 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IAR++ + +D++ L K+Y + +R H AL D++ + ++ + +V ++ + Sbjct: 124 --EHWIARKEGRAENHDMDGLIKKYSLEEIYR--HSALADAYYTACIFQRQLVKLAE--Y 177 Query: 184 GFKTNE-DRFFKEEK 197 G E R K EK Sbjct: 178 GVTLQELKRIGKREK 192 >gi|301053179|ref|YP_003791390.1| ATP-dependent DNA helicase [Bacillus anthracis CI] gi|300375348|gb|ADK04252.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str. CI] Length = 934 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|270290674|ref|ZP_06196898.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4] gi|270280734|gb|EFA26568.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4] Length = 178 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 7/126 (5%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI + ++D P+F ++ FF +AHNA FD + L+R + L Sbjct: 50 VQVHGIHEADVQDAPTFPELWPILQPFFTPDQLV-VAHNANFDNSVLKKTLERYELNRL- 107 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMV 176 P + +DTL +R P+ N LN+LC GI + H H AL DS +++ Y K Sbjct: 108 PYQTLDTLRTSRSFFPNYPNHKLNTLCDNLGIELEHH--HNALDDSLACANILLYEKKQF 165 Query: 177 GGSQIN 182 G I+ Sbjct: 166 GADAIS 171 >gi|298528189|ref|ZP_07015593.1| DNA polymerase III, epsilon subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298511841|gb|EFI35743.1| DNA polymerase III, epsilon subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 249 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 18/189 (9%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63 N+ +V D E TGL+ K D I+ IGA+ + + ++F CP R +++ +H Sbjct: 48 NEYDFVVLDTELTGLNVKKDEIVTIGALRISEMRIDMEQSFYFCACPT-RDVPKQSIVIH 106 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + P DF N+ + HN D+ IN EL++ L + Sbjct: 107 GITPSEAQKAPPLKEALQGLLDFCG--NSIIVGHNINLDISVINRELKKEFGGELH-NPC 163 Query: 124 IDTLSIARRK-----------HPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDV 170 IDT+ +AR+ + +L L + +G+ + H + AL ++L + Sbjct: 164 IDTMRLARQYREGQWTGAYECYEEYSYNLRKLSREFGLPLFTEHNAFTDALQTAYLFIYL 223 Query: 171 YIKMMVGGS 179 KM V + Sbjct: 224 VHKMQVNAA 232 >gi|313623167|gb|EFR93428.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria innocua FSL J1-023] Length = 928 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 11/167 (6%) Query: 6 KMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LH 63 K R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L Sbjct: 3 KKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE--KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+ + +K+ P F + ++ ++AHN FD F+ E+ R L + Sbjct: 60 GISPKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKK 116 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 +DT+ +AR +P L L +G + H H A D+ + +D Sbjct: 117 LDTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161 >gi|269986750|gb|EEZ93030.1| Exonuclease RNase T and DNA polymerase III [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 199 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 17/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDE 68 IV DIET+G N I+ IGAV D+S R F Q ++ + EAL ++G E Sbjct: 2 IVVDIETSGTSPYNHSILSIGAV---DFSNPERQFYQECQIEKDKEYTEEALNVNGFKKE 58 Query: 69 FLKD--KPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIID 125 L D K + S+ +EF + + I HN FD F+N ++ N + R+ID Sbjct: 59 ELTDPKKKTLESVLNEFIVWIQPVKDKTIGGHNVNFDANFLNYSFKKYNINFSFGHRVID 118 Query: 126 TLS------IARRKHPSSRN---DLNS-LCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T S ++R P ++N D+NS Y H AL + + ++ +++ Sbjct: 119 THSLVYASLLSRHIDPPTKNEKTDINSDYVFNYAGLPPEPKPHNALNGAKMEAEALSRLI 178 Query: 176 VG 177 +G Sbjct: 179 LG 180 >gi|253577523|ref|ZP_04854836.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14] gi|251843063|gb|EES71098.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14] Length = 951 Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 8/170 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D ETTG S +D II++G + ++ ++ F+ P G P L GIT Sbjct: 1 MKYAVLDFETTGNQSSDD-IIQVGLAIIEPDRSISQVYRSFVKP-GVPIPPFITGLTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE +KD P + E N+ + HN FD ++ + L + P RI+DT Sbjct: 59 DEDVKDAPELDEVMMEMVPLLND--VVLVGHNVAFDFNYLQSALDKTGYLPFT-GRILDT 115 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + PS + L + + + H H A D+ + +++K + Sbjct: 116 MDFLKILFPSLTSYQLGMVAAEF--EVEHERPHQADSDALATALIFLKCL 163 >gi|52143806|ref|YP_083022.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus E33L] gi|51977275|gb|AAU18825.1| ATP-dependent DNA helicase [Bacillus cereus E33L] Length = 934 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|228932930|ref|ZP_04095795.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826733|gb|EEM72502.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 934 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFQDVAPMVGELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|16801079|ref|NP_471347.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria innocua Clip11262] gi|16414514|emb|CAC97243.1| dinG [Listeria innocua Clip11262] Length = 928 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 11/167 (6%) Query: 6 KMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LH 63 K R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L Sbjct: 3 KKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE--KPIPAFIQELT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+ + +K+ P F + ++ ++AHN FD F+ E+ R L + Sbjct: 60 GISPKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKK 116 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 +DT+ +AR +P L L +G + H H A D+ + +D Sbjct: 117 LDTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161 >gi|215487057|ref|YP_002329488.1| exodeoxyribonuclease X [Escherichia coli O127:H6 str. E2348/69] gi|312967045|ref|ZP_07781263.1| exonuclease family protein [Escherichia coli 2362-75] gi|331647439|ref|ZP_08348531.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M605] gi|331657890|ref|ZP_08358852.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA206] gi|215265129|emb|CAS09517.1| DNA exonuclease X [Escherichia coli O127:H6 str. E2348/69] gi|312288509|gb|EFR16411.1| exonuclease family protein [Escherichia coli 2362-75] gi|315299931|gb|EFU59169.1| exonuclease [Escherichia coli MS 16-3] gi|330911653|gb|EGH40163.1| exodeoxyribonuclease X [Escherichia coli AA86] gi|331043163|gb|EGI15301.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M605] gi|331056138|gb|EGI28147.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA206] Length = 220 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKIRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|313124719|ref|YP_004034978.1| DNA polymerase iii polc-type [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281282|gb|ADQ62001.1| DNA polymerase III PolC-type [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 298 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 22/178 (12%) Query: 5 NKMRKIV-----FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N ++KIV D ETTGL + D +IEIG + + + T+R ++ + P +N + Sbjct: 3 NYVKKIVSDYCVLDTETTGLSAYYDEVIEIGILRVRNGEITDR-YEQLIKP---ENEIDG 58 Query: 60 L--KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 L GIT+E + DKP+ + S+ F + HN FDV F+ A +D Sbjct: 59 FITSLTGITNEMVADKPAIEDVKSDVLAFLGSDII--VGHNTSFDVRFLAAGFH---EDI 113 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +DT+ AR+ +P + + L+ L + +T ++H AL D ++Y M Sbjct: 114 --ANEYMDTMQFARKLYPDLTHHRLSDLSEYLYLT---NNEHRALADCVTTEELYEAM 166 >gi|300117431|ref|ZP_07055221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus SJ1] gi|298725266|gb|EFI65918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus SJ1] Length = 934 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|260437725|ref|ZP_05791541.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876] gi|292809747|gb|EFF68952.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876] Length = 234 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 12/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 + D+ETTGL +++IIE+GAV D K + + P + PE + ++ GI D+ Sbjct: 6 VAIDLETTGLSPYDNKIIELGAVRYRD-GKPVDQYNTLINPG--VHIPERITEITGIDDD 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P +F N + HN FD FI L + + + IDTL Sbjct: 63 MVSKAPYIDDELDRIMEFIG--NDVILGHNVIFDYTFIAGALAGHSIEY--SAEAIDTLK 118 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 A++ P++ + +L LC+ + I H H A D+ ++VY ++ Sbjct: 119 FAKKVLPANESKNLEHLCEMFDIVTIH---HRAYEDAMSAANVYFRL 162 >gi|145636543|ref|ZP_01792211.1| ribonuclease T [Haemophilus influenzae PittHH] gi|145270368|gb|EDK10303.1| ribonuclease T [Haemophilus influenzae PittHH] Length = 229 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 20/190 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L +D Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R + ++P P + DT S+A + L C I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMM 175 + ++ M+ Sbjct: 192 RTAKLFCYMV 201 >gi|313682951|ref|YP_004060689.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense DSM 16994] gi|313155811|gb|ADR34489.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 204 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 9/170 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL++K D ++ IGAV++ D T+ +F++FL P+ R+ S E++K+H I Sbjct: 32 VVFDTETTGLNTKKDEVLSIGAVKIKGDKILTSESFELFLKPS-REISVESIKIHHIRPC 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ +F +F N I + +FD+ +N ++ L P+R I+ Sbjct: 91 DLENAIEPVEGAKKFLEFVG--NRPLIGYYLEFDMAMMNRLIKPWIGVNL-PNRQIEVSG 147 Query: 129 IARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + K P DL + I +H AL D+ + + VYIK+ Sbjct: 148 LYFDKKIELIPQGNIDLRFDTILRDLNIPRMGQHNALNDAIMTAMVYIKL 197 >gi|260773225|ref|ZP_05882141.1| ribonuclease T [Vibrio metschnikovii CIP 69.14] gi|260612364|gb|EEX37567.1| ribonuclease T [Vibrio metschnikovii CIP 69.14] Length = 218 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI A+ L + + T + P G AL+ +G Sbjct: 20 VVIDVETAGFNPQTDALLEICAITLCMDEQGDLHPASTLHFHIEPFEGANIEKAALEFNG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFW-DFFNEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ + E + EQ A +AHNA FD GF+ A +R + Sbjct: 80 IHDPFSALRGAVTEEYALKEIYKQVRKEQKAADCSRAIIVAHNASFDHGFVMAANERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ +R H AL D+ + ++ Sbjct: 140 KRVPFHPFATFDTAALSGLAY--GQTVLAKACKAAGMEFDNREAHSALYDTQQTAALFCG 197 Query: 174 MM 175 ++ Sbjct: 198 II 199 >gi|238925353|ref|YP_002938870.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC 33656] gi|238877029|gb|ACR76736.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC 33656] Length = 245 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 21/173 (12%) Query: 11 VFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHG 64 V D+E TGL +KND+IIEIGA E++D T + P +++ P+ ++ L G Sbjct: 12 VIDLEMTGLSAKNDKIIEIGAARVRGGEIVD------TISTLVNP--KQHIPQRVQELTG 63 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD +++ +F + + N FD F+ +N Sbjct: 64 ITDSDVENAADMDEAVDNLLNFIGDDII--LGQNVTFDYSFLKQ--WAVNHKRTLSLNAY 119 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 DTL IAR+ P+ ++ L LC+ +G +S ++ H AL D+ ++ K++ Sbjct: 120 DTLKIARKCLPAEQSKKLEDLCEYFG--VSRKNAHRALDDAIETKQIFEKLLA 170 >gi|289209028|ref|YP_003461094.1| exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp. K90mix] gi|288944659|gb|ADC72358.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp. K90mix] Length = 246 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 24/181 (13%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 R + D+ETTGLD ++D I+ IG V + +D S ++ CP +++ +H Sbjct: 55 RFLAVDLETTGLDPEHDAILSIGWVAMDGVRIDLSTADQRLVRADCPVPEQSA----VIH 110 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPS 121 ITD + S ++ Q +AH+A ++GF+ R+ + PL Sbjct: 111 RITDREAAGGTTVDSALDALFEVL--QGRVLVAHHAALELGFLEEACYRLYGVRPPLP-- 166 Query: 122 RIIDTLSIARRKH-------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++DTL +A R+ P+ L++L RY + H AL D+ ++++ + Sbjct: 167 -VVDTLRLAERQLRRAGRPIPADGMRLHTLRGRY--NLPQYRAHDALFDALAAGELFVAL 223 Query: 175 M 175 + Sbjct: 224 V 224 >gi|329946892|ref|ZP_08294304.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526703|gb|EGF53716.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 552 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 20/171 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHG 64 +V D+ETTG + EIGAV+ R QV L G + L G Sbjct: 23 VVVDLETTGGAPGAQALTEIGAVK-------ARGGQVLTDFFTLVNPGVAIPAQITMLTG 75 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 IT+ + P + F D+ + + +AHNA+FDVG + + + +P R Sbjct: 76 ITNAMVAGAPGVRTCVEAFLDWADLLAGDVVLVAHNARFDVGHLRGAAAALGLEWPEP-R 134 Query: 123 IIDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++DTL++AR+ S + L +L G R H AL D+ DV Sbjct: 135 VLDTLALARKAWTRSEVPNHKLGTLAAFVGSQT--RPTHRALDDACATVDV 183 >gi|326332133|ref|ZP_08198417.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] gi|325950104|gb|EGD42160.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] Length = 228 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 3/112 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R N+ V D+ETTGLD DR+I++ ++ ++ + P G P +++ Sbjct: 23 RGNRRGFAVLDVETTGLDPYRDRVIQVAIRQIAADGTAESEWETLVNP-GAGVDPGPVEV 81 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 HG+T L P F + + + + ++AHNA FD F+ E R Sbjct: 82 HGLTTADLAGAPPFRDVAATIAERLAGRV--FVAHNAAFDWAFVAVESDRAG 131 >gi|324325658|gb|ADY20918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar finitimus YBT-020] Length = 934 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|87120665|ref|ZP_01076558.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121] gi|86163893|gb|EAQ65165.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121] Length = 203 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D ETTGL + DR IEIGAV+L + + FQ + P G + GI++ Sbjct: 7 VILDFETTGLSPDQGDRAIEIGAVKL-EAGEVVAEFQALMNP-GFSVTSFIEGYTGISNA 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L S + F +F + N IAHNA FD F++AE R N + +L Sbjct: 65 MLAQADSCREVMESFAEFIADNN--LIAHNASFDRRFLDAEFSRFNH--VYQGDFSCSLL 120 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++RR + + L +L ++ H AL D+ + + +++ M+ Sbjct: 121 LSRRIFQDAPSHSLGALVNYINLS-GTGDFHRALYDAQMTAKLWMAML 167 >gi|327479762|gb|AEA83072.1| ribonuclease T [Pseudomonas stutzeri DSM 4166] Length = 224 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKN-SPEALKL 62 +V D+E G + D ++EI AV + L Y + ++V P N P AL+ Sbjct: 32 VVIDVECGGFNCATDALLEIAAVTVGMDEQGLLYPQDTLFYRVE--PFAGANIEPAALEF 89 Query: 63 HGI-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR-- 112 GI D L+ ++ + + IF A + HN+ FD+GF+NA + R Sbjct: 90 TGIKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGFLNAAIARCE 149 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 150 IKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFC 207 Query: 173 KMM 175 ++ Sbjct: 208 GIV 210 >gi|313889930|ref|ZP_07823570.1| putative ATP-dependent DNA helicase DinG [Streptococcus pseudoporcinus SPIN 20026] gi|313121696|gb|EFR44795.1| putative ATP-dependent DNA helicase DinG [Streptococcus pseudoporcinus SPIN 20026] Length = 820 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 10/165 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+E T S + RII+IG V +++ K FQ + P+ K S L GITD+ L Sbjct: 10 VIDLEATNAGS-DARIIQIGIV-IVENKKIIDRFQTDINPHS-KLSEHIKSLTGITDQQL 66 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P FS + S+ ++ ++ ++AHN KFD + L + L P +DT+ +A Sbjct: 67 ASAPEFSQVASQIFELI--KDCVFVAHNVKFDANLLAEALFFEGFELLTPR--MDTVELA 122 Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + P+ + +L L K + ++H H A+ D+ + ++IK+ Sbjct: 123 QVFFPNLEKYNLGHLAKNMDLHLAH--AHTAIDDALATAKLFIKI 165 >gi|257869632|ref|ZP_05649285.1| DNA polymerase III [Enterococcus gallinarum EG2] gi|257803796|gb|EEV32618.1| DNA polymerase III [Enterococcus gallinarum EG2] Length = 920 Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 10/158 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG D DRII+ G V + D NR F + P+ R+ S + L IT++ + Sbjct: 7 VVDLETTGTDPAIDRIIQFGCVLIQDGQVINR-FATDINPD-RRISKQIQNLTHITNQQV 64 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 K P F + ++ + ++AHN FD F++ EL R L+ P IDT+ + Sbjct: 65 KRAPYFEDVAHTIYNLLTQ--TVFVAHNIYFDYHFLSQELIRCGMPSLEIPG--IDTVEL 120 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHL 166 A+ P+ S L L + G H + H A D+ + Sbjct: 121 AQVFLPTESSFRLGDLAESIGFV--HENPHQADSDAEV 156 >gi|118477094|ref|YP_894245.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al Hakam] gi|196046614|ref|ZP_03113838.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB108] gi|225863505|ref|YP_002748883.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB102] gi|229183836|ref|ZP_04311053.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC 6E1] gi|118416319|gb|ABK84738.1| ATP-dependent DNA helicase [Bacillus thuringiensis str. Al Hakam] gi|196022547|gb|EDX61230.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB108] gi|225789838|gb|ACO30055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB102] gi|228599685|gb|EEK57288.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC 6E1] Length = 934 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|152975065|ref|YP_001374582.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023817|gb|ABS21587.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cytotoxicus NVH 391-98] Length = 929 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV +++ + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAV-VVEGGEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + ID Sbjct: 62 DENLVKQAPLFQDVAPMIVELL--QGASFVAHNVHFDWNFLKEELKQAGYADIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|30261638|ref|NP_844015.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames] gi|47526838|ref|YP_018187.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames Ancestor'] gi|49184469|ref|YP_027721.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne] gi|165869397|ref|ZP_02214056.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0488] gi|167639095|ref|ZP_02397368.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0193] gi|170706543|ref|ZP_02897003.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0389] gi|177650486|ref|ZP_02933453.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0174] gi|190568647|ref|ZP_03021552.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis Tsiankovskii-I] gi|227815611|ref|YP_002815620.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. CDC 684] gi|229602233|ref|YP_002866045.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0248] gi|254734478|ref|ZP_05192190.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Western North America USA6153] gi|254755128|ref|ZP_05207162.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum] gi|254759665|ref|ZP_05211689.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Australia 94] gi|30255866|gb|AAP25501.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. Ames] gi|47501986|gb|AAT30662.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. 'Ames Ancestor'] gi|49178396|gb|AAT53772.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus anthracis str. Sterne] gi|164714837|gb|EDR20355.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0488] gi|167512885|gb|EDR88258.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0193] gi|170128641|gb|EDS97508.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0389] gi|172083630|gb|EDT68690.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0174] gi|190560247|gb|EDV14227.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis Tsiankovskii-I] gi|227006832|gb|ACP16575.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. CDC 684] gi|229266641|gb|ACQ48278.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0248] Length = 934 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|229195843|ref|ZP_04322602.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1293] gi|228587616|gb|EEK45675.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1293] Length = 934 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|295096042|emb|CBK85132.1| RNAse T [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 219 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 22/195 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLVPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF E + A +AHNA FD F A +R + Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKMVRKGMKENDCSRAIMVAHNATFDHSFTMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C GI H AL D+ ++++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACITAGIAFDGTQAHSALYDTERTAELFCEI 197 Query: 175 M-----VGGSQINFG 184 + +GG + G Sbjct: 198 VNRWKRLGGWPLPMG 212 >gi|229090605|ref|ZP_04221839.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-42] gi|228692748|gb|EEL46473.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-42] Length = 934 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|304386198|ref|ZP_07368531.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] gi|304327555|gb|EFL94782.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] Length = 181 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 7/126 (5%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI + ++D P+F ++ FF +AHNA FD + L+R + L Sbjct: 53 VQVHGIHEADVQDAPTFPELWPILQPFFTPDQLV-VAHNANFDNSVLKKTLERYELNRL- 110 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMV 176 P + +DTL +R P+ N LN+LC GI + H H AL DS +++ Y K Sbjct: 111 PYQTLDTLRTSRSFFPNYPNHKLNTLCDNLGIELEHH--HNALDDSLACANILLYEKKQF 168 Query: 177 GGSQIN 182 G I+ Sbjct: 169 GADAIS 174 >gi|206974778|ref|ZP_03235693.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus H3081.97] gi|217959123|ref|YP_002337671.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus AH187] gi|222095271|ref|YP_002529331.1| bifunctional ATP-dependent DNA helicase/DNA polymerase iii subunit epsilon [Bacillus cereus Q1] gi|206746797|gb|EDZ58189.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus H3081.97] gi|217066733|gb|ACJ80983.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH187] gi|221239329|gb|ACM12039.1| ATP-dependent DNA helicase [Bacillus cereus Q1] Length = 934 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|91223850|ref|ZP_01259114.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|91191342|gb|EAS77607.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] Length = 248 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 19/190 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+S+ D I+ IG V +D + N + + PN R+ + E++ +HGITD Sbjct: 59 VSVDFETTGLNSEEDVILTIGLVPFTIDRVQCNGSAHWVVNPN-RELNHESVIIHGITDS 117 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127 +K+ P S I E D + + + H + F NA L I + P ++DTL Sbjct: 118 EVKNAPQLSQILGEILDALSGKVV--LVHYKNIERQFFNNALLNSIGEGIQFP--VVDTL 173 Query: 128 ----SIARRKHPSSRNDLNSL-CKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGG 178 +I RR+ R +N L K+ G + + H R ++G A H L+D + Sbjct: 174 DIEYAIQRRE---CRGFINKLKGKKPGSVRLGHARERYGLPAYQPHHALTDALATAELFQ 230 Query: 179 SQINFGFKTN 188 +Q+ + F N Sbjct: 231 AQLQYHFNRN 240 >gi|229844583|ref|ZP_04464723.1| ribonuclease T [Haemophilus influenzae 6P18H1] gi|229812832|gb|EEP48521.1| ribonuclease T [Haemophilus influenzae 6P18H1] gi|301169030|emb|CBW28627.1| ribonuclease T (RNase T) [Haemophilus influenzae 10810] Length = 229 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 20/190 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L +D Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73 Query: 56 SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R + ++P P + DT S+A + L C I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMM 175 + ++ M+ Sbjct: 192 RTAKLFCYMV 201 >gi|104773929|ref|YP_618909.1| hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423010|emb|CAI97696.1| Hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 290 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 13/168 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIETTGL+++ D+I+ IGAV K + T L + ++L GIT E Sbjct: 127 VAVDIETTGLNTETDQILSIGAV------KHDGTEFYRLIKQDIDVPKQIVELTGITSEM 180 Query: 70 L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L K+ E DF N + +N +FD F+N + ++ L + I D L Sbjct: 181 LSKEGVPLQDALEELTDFVG--NVPIVGYNFRFDSAFLNRDYRKCGMQELK-NEIKDLLP 237 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +RK N L ++ YG I ++ H A+ D+ ++ +K++ Sbjct: 238 VVKRKEKFLDNYKLQTVLSNYG--IENKVPHNAVSDARATKELAMKLI 283 >gi|260912251|ref|ZP_05918803.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp. oral taxon 472 str. F0295] gi|260633685|gb|EEX51823.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp. oral taxon 472 str. F0295] Length = 284 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGLD NDRII+I +++ K R +F+ P G+ E +L GIT + Sbjct: 10 IVFDLETTGLDLVNDRIIQISYIKVYPDGKEERE-NLFVYP-GKPIPDEVSELTGITTDL 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDTL 127 ++D P+F + + F + ++ N+ FD+ + E R D R+ID Sbjct: 68 VEDAPTFEELAPRLNEVF--KGCDFAGFNSNHFDIPMLAEEFLRAEIDFDFSSVRLIDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 +I H + +L + K Y Sbjct: 126 TIF---HKMEKRNLAAAYKFY 143 >gi|289207535|ref|YP_003459601.1| ribonuclease T [Thioalkalivibrio sp. K90mix] gi|288943166|gb|ADC70865.1| ribonuclease T [Thioalkalivibrio sp. K90mix] Length = 228 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 87/181 (48%), Gaps = 19/181 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D + ++++ AV L D+ +RT + + P G + P++L+++G Sbjct: 24 VVVDVETGGFDCRRHALLQVAAVFLRRDENDHLVRDRTVSLHVRPYEGSEMDPKSLEVNG 83 Query: 65 ITD------EFLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 I + +D+ + +FSE + + A + HNA FD+GF++ +R I Sbjct: 84 IDPYHPLRAAYPEDQ-AMGRLFSEVRREVKINHCKRAILVGHNAHFDLGFVHTAAERCGI 142 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P +DT+S+A + L G+ + H A D+ +D++ + Sbjct: 143 KRNPFHPFSSLDTVSLAALAF--GQTVLARAADAAGLGWDAEAAHSAAFDAEKTADIFCQ 200 Query: 174 M 174 + Sbjct: 201 I 201 >gi|90109308|pdb|2F96|A Chain A, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T (Ribonuclease T) gi|90109309|pdb|2F96|B Chain B, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T (Ribonuclease T) Length = 224 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A + K T+ + P G P AL+ G Sbjct: 32 VVVDVETGGFNSATDALLEIAATTVGXDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTG 91 Query: 65 ITDEF-----LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + ++++ + + IF A + HN+ FD+GF+NA + R I Sbjct: 92 IKLDHPLRXAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIK 151 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ G +R H A D+ ++++ + Sbjct: 152 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGXEFDNREAHSARYDTEKTAELFCGI 209 Query: 175 M 175 + Sbjct: 210 V 210 >gi|294789265|ref|ZP_06754503.1| exonuclease, DNA polymerase III, epsilon subunit family [Simonsiella muelleri ATCC 29453] gi|294482690|gb|EFG30379.1| exonuclease, DNA polymerase III, epsilon subunit family [Simonsiella muelleri ATCC 29453] Length = 450 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 85/166 (51%), Gaps = 11/166 (6%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHG 64 ++ ++ D+E TG +DRI EI + D R Q+ N +K E + +L G Sbjct: 16 RLPVVILDLEATGGHFMHDRITEIAFLR-FDGQNVERFTQLV---NPQKEISEFVTQLTG 71 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I++E + + P+F+ + + + +AHN++FD + E +R P+ + Sbjct: 72 ISNEMVANAPTFADVIPHILPML--RGSLLVAHNSRFDYTLLRNEFRRAGVPFATPT--L 127 Query: 125 DTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ ++R +P+ +++L+++ R+G+T S +H A D +L+D Sbjct: 128 CTVKLSRTLYPNEHKHNLDAVANRFGLT-SDGKRHRAWADVAILAD 172 >gi|253989411|ref|YP_003040767.1| ribonuclease T [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780861|emb|CAQ84023.1| ribonuclease T [Photorhabdus asymbiotica] Length = 217 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + + + P G P AL+ G Sbjct: 20 VVIDVETGGFNAKTDALLEIAAITLKMDDEGWITPDESLHFHIEPFEGANLEPAALEFTG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFI--NAELQRIN 114 I + + + +IF + A +AHNA FD GF+ AE R+ Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKNSHCNRAIIVAHNANFDHGFVMAAAERARLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++ + L C G++ + H AL D++ ++++ +M Sbjct: 140 RNPFHPFATFDTAALGGLV--LGQTILAKACITAGVSFDNNQAHSALYDTNRTAELFCEM 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|229029323|ref|ZP_04185411.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1271] gi|228731982|gb|EEL82876.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1271] Length = 934 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEVHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|224584057|ref|YP_002637855.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468584|gb|ACN46414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 257 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 17/190 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P N PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 197 Query: 175 MVGGSQINFG 184 + GS G Sbjct: 198 SIAGSAWAAG 207 >gi|289676753|ref|ZP_06497643.1| ribonuclease T [Pseudomonas syringae pv. syringae FF5] Length = 225 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + +D + T+ + P G AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ ++ + + IF + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ GI R H A D+ ++++ + Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210 Query: 175 M 175 + Sbjct: 211 V 211 >gi|239502706|ref|ZP_04662016.1| hypothetical protein AbauAB_10367 [Acinetobacter baumannii AB900] Length = 179 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 73/168 (43%), Gaps = 15/168 (8%) Query: 13 DIETTGLDSKN-DRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ETTGL+ +N D+IIEI ++ LD +K Q + P R P+A +HGI+ L Sbjct: 9 DTETTGLEVENGDKIIEIALIKYDLDGAKLEEFVQR-IDPE-RNIDPKAQAVHGISYSDL 66 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P F I E N + +AHN FD FI EL+R P S T+ Sbjct: 67 IGCPKFVDIAEEVASIVNHASL-LVAHNFAFDGPFIATELKRAGMTPKKVSSFC-TMEYG 124 Query: 131 R-----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R K+P L LC G+ + H A D ++ + K Sbjct: 125 RWATFDGKYPK----LADLCFSLGVEYDASAAHAASYDVDVMMQCFFK 168 >gi|228926672|ref|ZP_04089741.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228833048|gb|EEM78616.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 934 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|323174733|gb|EFZ60349.1| exonuclease family protein [Escherichia coli LT-68] Length = 220 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L + + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYRTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|313681812|ref|YP_004059550.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense DSM 16994] gi|313154672|gb|ADR33350.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 232 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 17/124 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ETTGL++K DRI +G + T L G+K P + +H IT+E Sbjct: 2 IFLDTETTGLEAK-DRICALGMI-------TEDEAHYELINPGKKIPPSSSAIHHITNEM 53 Query: 70 LKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127 +KD P+F+ S+ +E N ++HNA F EL + K+ L RIIDTL Sbjct: 54 VKDAPAFAESLSAEKLKLLNTPETILVSHNAPF-------ELDMLQKEGLAWQGRIIDTL 106 Query: 128 SIAR 131 ++ Sbjct: 107 KCSK 110 >gi|114766856|ref|ZP_01445783.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Pelagibaca bermudensis HTCC2601] gi|114540977|gb|EAU44036.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseovarius sp. HTCC2601] Length = 401 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD ETTGL D +++IGAV +L+ L G P + K+H ++D + Sbjct: 279 VFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGEVMDQLVDPGIPIPPSSTKVHQVSDAMV 338 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +P + F F + + +AHNA FD+ F+ R+ + P I+DT+ Sbjct: 339 RGQPDIAEAGRRFHRF--AKGSVIVAHNAPFDMAFLRRHRNRMGVEWDHP--ILDTV 391 >gi|66047122|ref|YP_236963.1| ribonuclease T [Pseudomonas syringae pv. syringae B728a] gi|302184721|ref|ZP_07261394.1| ribonuclease T [Pseudomonas syringae pv. syringae 642] gi|75500938|sp|Q4ZPJ7|RNT_PSEU2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|63257829|gb|AAY38925.1| Ribonuclease T [Pseudomonas syringae pv. syringae B728a] Length = 225 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 22/191 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + +D + T+ + P G AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ ++ + + IF + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ GI R H A D+ ++++ + Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210 Query: 175 M-----VGGSQ 180 + +GG Q Sbjct: 211 VNRWKEMGGWQ 221 >gi|291617286|ref|YP_003520028.1| Rnt [Pantoea ananatis LMG 20103] gi|291152316|gb|ADD76900.1| Rnt [Pantoea ananatis LMG 20103] gi|327393738|dbj|BAK11160.1| ribonuclease T Rnt [Pantoea ananatis AJ13355] Length = 223 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++E+ A+ L +D + ++T + P G PEAL G Sbjct: 20 VVIDVETAGFNAQTDALLEVAAITLKMDDEGWLHHDQTLHFHVEPFVGALLHPEALAFTG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD+ F+NA +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKLVRKGIKDTGCNRAIMVAHNATFDLNFMNAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L CK G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACKAAGMEFDSSQAHSALYDTQQTATLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|145634678|ref|ZP_01790387.1| ribonuclease T [Haemophilus influenzae PittAA] gi|145268223|gb|EDK08218.1| ribonuclease T [Haemophilus influenzae PittAA] gi|309972517|gb|ADO95718.1| Ribonuclease T [Haemophilus influenzae R2846] Length = 229 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 20/190 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L +D Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R + ++P P + DT S+A + L C I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMM 175 + ++ M+ Sbjct: 192 RTAKLFCYMV 201 >gi|330957749|gb|EGH58009.1| ribonuclease T [Pseudomonas syringae pv. maculicola str. ES4326] Length = 225 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 +V D+ET G +S D ++EI AV + +D + T+ + P N AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFTG 92 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ ++ + + IF + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETALNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ GI R H A D+ ++++ + Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210 Query: 175 M 175 + Sbjct: 211 V 211 >gi|329731357|gb|EGG67723.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus subsp. aureus 21193] Length = 784 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I + Sbjct: 8 VVDLETTGNQLDFDDIIQIG----ITFVRNNQIIDTYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E + ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYG--KIKDCIFVAHNVDFDLNFIKKAFKDYNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 I + P+ ++ L+ L + +GIT+ +HR+ A + L+ Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLM 162 >gi|210620723|ref|ZP_03292209.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275] gi|210155224|gb|EEA86230.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275] Length = 179 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGL+ I + + K R++ F+ P ++ P +L GI++E Sbjct: 14 IVVDLETTGLNPFEGNEIIEIGITEIRNGKIVRSYSRFVKPE-QEIPPFITELTGISNEM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++ + + F F IAHNAKFD+ F+N L ++ + + I TL + Sbjct: 73 VANEDTIEQVLPRFRKFIGSNT--IIAHNAKFDIKFLNYYLNKLGLEEI--KDYICTLEL 128 Query: 130 ARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ + L + C+ YG I +++ H A D+ +++++K+ Sbjct: 129 LKKVSSYGGKNKKLATACEYYG--IENKNAHRASSDTQATAELFLKI 173 >gi|15604982|ref|NP_219766.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D/UW-3/CX] gi|76788983|ref|YP_328069.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13] gi|166154472|ref|YP_001654590.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu] gi|166155347|ref|YP_001653602.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802684|ref|YP_002887878.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/Jali20/OT] gi|237804606|ref|YP_002888760.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/TZ1A828/OT] gi|255311062|ref|ZP_05353632.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276] gi|255317363|ref|ZP_05358609.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s] gi|255348621|ref|ZP_05380628.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70] gi|255503161|ref|ZP_05381551.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s] gi|255506839|ref|ZP_05382478.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923] gi|301335732|ref|ZP_07223976.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1] gi|3328673|gb|AAC67854.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX] gi|76167513|gb|AAX50521.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13] gi|165930460|emb|CAP03953.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu] gi|165931335|emb|CAP06907.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231272906|emb|CAX09817.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/TZ1A828/OT] gi|231273918|emb|CAX10710.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/Jali20/OT] gi|289525300|emb|CBJ14776.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2] gi|296434850|gb|ADH17028.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150] gi|296435777|gb|ADH17951.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768] gi|296436702|gb|ADH18872.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222] gi|296437637|gb|ADH19798.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074] gi|296438570|gb|ADH20723.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023] gi|297140136|gb|ADH96894.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301] gi|297748391|gb|ADI50937.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-EC] gi|297749271|gb|ADI51949.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-LC] Length = 232 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 12/170 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRI+E+ A T+ +FQ + P + EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIVELAAYN----GTTSESFQTLVNPEIPIPA-EATKIHGITTAE 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128 + D P F + +F +F N +N FD + E +R +P R ID+L Sbjct: 60 VADAPRFPEAYQKFIEFCGTDNILVAHNNNAFDYPLLVRECRRHGLS--EPQLRTIDSLK 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 A++ ++ L L + YG H AL D L V+ +VG Sbjct: 118 WAKKYRTDLPQHSLQYLRQVYG--FEENQAHRALDDVITLYRVF-SALVG 164 >gi|222824026|ref|YP_002575600.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100] gi|222539248|gb|ACM64349.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100] Length = 254 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 92/161 (57%), Gaps = 12/161 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 V DIE+TG K+ +I+EIGAV++ +Y + +R F+ F+ ++ PE + +L GI+ + Sbjct: 74 VVDIESTG-GIKSGQILEIGAVKIQNYKEIDR-FESFV---KVESIPENITELTGISLDM 128 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ PS ++ + F F +++ ++AHN +FD FI+ + N + +R + T+ + Sbjct: 129 VENAPSLKTVLNNFKLFL--KDSIFVAHNVRFDYHFISKAMYE-NDFGVLLNRRLCTIDL 185 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 A++ S + L++L + I H H AL D+ S++ Sbjct: 186 AKKCIESPKYGLDALKEFLCIESKH---HRALSDALAASEI 223 >gi|322805639|emb|CBZ03204.1| ATP-dependent DNA helicase UvrD/PcrA,clostridial paralog [Clostridium botulinum H04402 065] Length = 322 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 6/125 (4%) Query: 53 RKNSPEALKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 +K+ ++ +HG +D+FLK+ + + +F +F ++ + HN FD +N+EL+ Sbjct: 4 KKSVGDSYLVHGFSDQFLKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDTSILNSELE 61 Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 R++ + DTL IARR +PS N L +L K + +S H A+ D DV Sbjct: 62 RLSLEKASFKTYYDTLDIARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDV 119 Query: 171 YIKMM 175 + M+ Sbjct: 120 LMAML 124 >gi|282879820|ref|ZP_06288549.1| exonuclease [Prevotella timonensis CRIS 5C-B1] gi|281306330|gb|EFA98361.1| exonuclease [Prevotella timonensis CRIS 5C-B1] Length = 286 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 I+FD+ETTGLD NDRII+I +++L + R +F+ P K P E ++L GIT+E Sbjct: 10 IIFDLETTGLDLVNDRIIQISYIKVLPNGEEERE-SIFVNP--EKPIPHEVIELTGITNE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127 + + P F I + + F + + N FDV + E R D +ID Sbjct: 67 DVANAPKFKEIAAHLQNQFKDSDIAGFNSN-HFDVPLLAEEFLRAGIDFDFSKCNLIDVQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 +I H R +L + K Y Sbjct: 126 TIF---HKMERRNLAAAYKFY 143 >gi|330973093|gb|EGH73159.1| ribonuclease T [Pseudomonas syringae pv. aceris str. M302273PT] Length = 213 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + +D + T+ + P G AL+ G Sbjct: 21 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 80 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ ++ + + IF A + HNA FD+GF+NA + R++ Sbjct: 81 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 140 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ GI R H A D+ ++++ + Sbjct: 141 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 198 Query: 175 M 175 + Sbjct: 199 V 199 >gi|330950000|gb|EGH50260.1| ribonuclease T [Pseudomonas syringae Cit 7] Length = 225 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + +D + T+ + P G AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ ++ + + IF + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ GI R H A D+ ++++ + Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210 Query: 175 M 175 + Sbjct: 211 V 211 >gi|218548753|ref|YP_002382544.1| ribonuclease T [Escherichia fergusonii ATCC 35469] gi|218356294|emb|CAQ88912.1| ribonuclease T (RNase T) [Escherichia fergusonii ATCC 35469] gi|324113426|gb|EGC07401.1| ribonuclease T [Escherichia fergusonii B253] gi|325497162|gb|EGC95021.1| ribonuclease T [Escherichia fergusonii ECD227] Length = 215 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDNTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I +++ + +IF + A +AHNA FD GF+ A R + Sbjct: 80 IDPNDPQRGAVREYDALHAIFKMVRKGIKDTGCNRAIMVAHNATFDHGFLMAAANRASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACTAAGMAFDSTQAHSALYDTEQTAMLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|330877336|gb|EGH11485.1| ribonuclease T [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966675|gb|EGH66935.1| ribonuclease T [Pseudomonas syringae pv. actinidiae str. M302091] Length = 225 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 +V D+ET G +S D ++EI AV + +D + T+ + P N AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFTG 92 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ ++ + + IF + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ GI R H A D+ ++++ + Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210 Query: 175 M 175 + Sbjct: 211 V 211 >gi|145631430|ref|ZP_01787200.1| ribonuclease T [Haemophilus influenzae R3021] gi|145632574|ref|ZP_01788308.1| ribonuclease T [Haemophilus influenzae 3655] gi|145640270|ref|ZP_01795854.1| ribonuclease T [Haemophilus influenzae R3021] gi|144982967|gb|EDJ90476.1| ribonuclease T [Haemophilus influenzae R3021] gi|144986769|gb|EDJ93321.1| ribonuclease T [Haemophilus influenzae 3655] gi|145274856|gb|EDK14718.1| ribonuclease T [Haemophilus influenzae 22.4-21] Length = 229 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 20/190 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L +D Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R + ++P P + DT S+A + L C I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMM 175 + ++ M+ Sbjct: 192 RTAKLFCYMV 201 >gi|71737285|ref|YP_276026.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A] gi|257486623|ref|ZP_05640664.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624955|ref|ZP_06457909.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650468|ref|ZP_06481811.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 2250] gi|298488734|ref|ZP_07006763.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|123635391|sp|Q48F11|RNT_PSE14 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|71557838|gb|AAZ37049.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A] gi|298156807|gb|EFH97898.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325627|gb|EFW81689.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. B076] gi|320327089|gb|EFW83103.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4] gi|330867245|gb|EGH01954.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330879065|gb|EGH13214.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4] gi|330889564|gb|EGH22225.1| ribonuclease T [Pseudomonas syringae pv. mori str. 301020] gi|331010105|gb|EGH90161.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 225 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + +D + T+ + P G AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ ++ + + IF + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ GI R H A D+ ++++ + Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210 Query: 175 M 175 + Sbjct: 211 V 211 >gi|170727084|ref|YP_001761110.1| ribonuclease T [Shewanella woodyi ATCC 51908] gi|169812431|gb|ACA87015.1| ribonuclease T [Shewanella woodyi ATCC 51908] Length = 222 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 24/203 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI AV +L ++T + P G PEAL Sbjct: 22 VVIDVETAGFNAQTDALLEI-AVTMLKMDDEGILSLDKTLHFHIEPFEGANLEPEALAFT 80 Query: 64 GI--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113 GI T+ + +K +F IF E +AHNA FD GF++ ++R + Sbjct: 81 GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSQAIERCAL 140 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ L C GI + H AL D+ ++++ Sbjct: 141 KRTPFHPFATFDTAALSGLA--LGHTVLAKACAIAGIPFDNSEAHSALYDTERTAELFCL 198 Query: 174 MM-----VGGSQINFGFKTNEDR 191 ++ +GG I ++ E++ Sbjct: 199 IVNRWKALGGWPIAIDEESKEEQ 221 >gi|288926239|ref|ZP_06420165.1| exonuclease [Prevotella buccae D17] gi|315606363|ref|ZP_07881379.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574] gi|288337018|gb|EFC75378.1| exonuclease [Prevotella buccae D17] gi|315252054|gb|EFU32027.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574] Length = 284 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGLD NDR+I++ +++ R ++ + P G+ +PE L GI+D+ Sbjct: 10 VVFDLETTGLDLVNDRVIQLSYIKVCPDGTELRGNEI-INP-GKPIAPEITALTGISDDD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDTL 127 +KD+P+F + + F + ++ N+ FD+ + E R D R+ID Sbjct: 68 VKDRPAFKELAPRLAEEF--KGCDFAGFNSNHFDIPMLAEEFLRAGIDFDFGKCRLIDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 +I H R +L + K Y Sbjct: 126 AIF---HKMERRNLAAAYKFY 143 >gi|260202912|ref|ZP_05770403.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis K85] gi|289572362|ref|ZP_06452589.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis K85] gi|289536793|gb|EFD41371.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis K85] Length = 329 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETLGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 D+P F+ I E D + +AHN FD F+ AE + + P+D ++ T+ + Sbjct: 75 DDQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L +G + + H A D+ +L+ + + Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDARVLTGILAAAL 175 >gi|325579056|ref|ZP_08149012.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392] gi|325159291|gb|EGC71425.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392] Length = 229 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 29/215 (13%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L N + + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDGNGNLHPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFF--NEQNAEW-----IAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + +++AE +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R + ++P P + DT ++A + L C+ I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTATLAGFMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMM-----VGG----SQINFGFKTNEDR 191 ++++ M+ +GG +Q N KT E++ Sbjct: 192 RTAELFCYMVNHLKELGGFPHIAQTNETEKTAENQ 226 >gi|332668025|ref|YP_004450813.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM 1100] gi|332336839|gb|AEE53940.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis DSM 1100] Length = 463 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 21/165 (12%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL----- 60 K + + D+ETTG + DRIIEI AV + D ++ +++ + +PE L Sbjct: 2 KKKYAIIDVETTGGKASRDRIIEI-AVVIHDGNQILESWESLI-------NPETLIPWNI 53 Query: 61 -KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L GI D+ + + P F + + + + A ++AHNA+FD FI E +R+ Sbjct: 54 TILTGINDQMVANAPKFYEVARKIVEL--TEGAIFVAHNARFDYSFIGEEFKRLGYT--Y 109 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163 + + TL +AR+ P L++L + + I ++++H A+ D Sbjct: 110 TRKQLCTLRLARQTLPGLYAYGLDALSRHF--NIHNQARHRAMGD 152 >gi|327483724|gb|AEA78131.1| Ribonuclease T [Vibrio cholerae LMA3894-4] Length = 224 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD F+ A +R + Sbjct: 80 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGVEFDNREAHSALYDTQKTAELFCT 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|283783236|ref|YP_003373990.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis 409-05] gi|283441075|gb|ADB13541.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis 409-05] Length = 359 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 20/174 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL------CPNGRKNS---PEAL 60 +V D ETTGL+SK D+IIEIGAV+ +D FQ + N KN+ E + Sbjct: 179 VVIDCETTGLNSKVDKIIEIGAVKFID--GKIEEFQKLININCDSVSNFNKNNFIPNEII 236 Query: 61 KLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---D 116 +L GIT L+ EF +F + + +N +FD+ F+N+ L +++ Sbjct: 237 ELTGITSNMLESYGVRLDLALKEFINFV--ERLPVLGYNVQFDMSFLNSALSSLDERFDH 294 Query: 117 PLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLL 167 L ++I D +++ +N L ++ Y I ++ HR+ A L +HL+ Sbjct: 295 SLSINKIFDISRFVKKEKKFLKNYQLKTVLHEYNIAESVPHRALLDARLTAHLV 348 >gi|83643302|ref|YP_431737.1| putative exonuclease [Hahella chejuensis KCTC 2396] gi|83631345|gb|ABC27312.1| putative exonuclease [Hahella chejuensis KCTC 2396] Length = 192 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 8/95 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D ETTGLD + + +IEI +++ + N F + P PEA ++HG+T+ Sbjct: 16 RVVVLDTETTGLDDQAE-VIEISVMDM----RGNVLFDQLVRPLN-PVPPEAAEIHGVTN 69 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 E L +KP+F ++ W + +A+NA FD Sbjct: 70 EKLANKPNFPDVYISLWRAIGGRTV--VAYNADFD 102 >gi|37677065|ref|NP_937461.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016] gi|37201610|dbj|BAC97431.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016] Length = 239 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 2/123 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD+K+D+I+ IG V+L + + L +G E+ +++G+T + Sbjct: 54 LALDFETTGLDAKHDKILSIGMVDLTLEGINLSSAEEILLNHGAYIKAESARINGLTPQA 113 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ S F Q +AH+A + GF+ A Q+ + P +DTL I Sbjct: 114 LEQGCSLEQGMMRL--FERAQGKVLLAHSAIIEQGFLQAFAQQHFQLAKLPCHFVDTLQI 171 Query: 130 ARR 132 +R Sbjct: 172 EKR 174 >gi|309807268|ref|ZP_07701238.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] gi|308166328|gb|EFO68537.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] Length = 233 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 16/180 (8%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K +DRII+ G + D K +T+ + P K P A++ L GI+++ Sbjct: 13 VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +FS + + +N ++AHN FD+ F+N EL P D + IDT+ Sbjct: 70 EAAKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFD-GKAIDTVE 126 Query: 129 IARRKHPSS-----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-MVGGSQIN 182 +A+ P+ ++ N+L ++ HR+ AL+ + +L + K+ M+ + +N Sbjct: 127 LAQIAFPTIPSYKLQDITNTLHIKHA--NPHRADSDALVTAKMLLKIIDKIEMLPTATLN 184 >gi|294792636|ref|ZP_06757783.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 6_1_27] gi|294456535|gb|EFG24898.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 6_1_27] Length = 862 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 6/155 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+E+TG D+ DRII+I A+ + + + F+ F+ P E ++HG +D + Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERFINPGIPVGQSE--EVHGFSDAY 552 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L++ +I + + F+ +NA + HN +DV EL R N + I DTL I Sbjct: 553 LQEHGEEPAIVLQAFKEFS-KNAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTLDI 611 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 RR +P+ N L L + I H H A+ D Sbjct: 612 YRRFYPNLPNHKLGFLASEF--PIHHEPTHNAMDD 644 >gi|88705709|ref|ZP_01103419.1| Ribonuclease T [Congregibacter litoralis KT71] gi|88700222|gb|EAQ97331.1| Ribonuclease T [Congregibacter litoralis KT71] Length = 210 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 20/193 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NG 52 M K++ R ++ D+ET G S D I+EI A V + D + + T + P G Sbjct: 1 MSMKSRFRGFLPVIVDMETGGFSSSTDAILEIAATVVRMDDTGQIAVHETHSFNVAPFEG 60 Query: 53 RKNSPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVG 104 AL GI E L +K + +F +Q A + HNA FD G Sbjct: 61 ANIEQSALDFTGIDPWHPFREALAEKEALGELFQIIRREIRDQECTRAILVGHNAHFDAG 120 Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+NA ++R I ++P P DT +++ + + L C GI + H A Sbjct: 121 FLNAAVERCEIKRNPFHPFSHFDTATLSGLAY--GQTVLAKSCYEAGIPFDNEQAHSAAY 178 Query: 163 DSHLLSDVYIKMM 175 D+ ++++ ++ Sbjct: 179 DAERTAELFCGIV 191 >gi|323496850|ref|ZP_08101887.1| ribonuclease T [Vibrio sinaloensis DSM 21326] gi|323318109|gb|EGA71083.1| ribonuclease T [Vibrio sinaloensis DSM 21326] Length = 220 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + + T + P G EAL G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLKMDENGDLQPASTIHFHVEPFEGANIEKEALDFIG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFI--NAELQRI 113 + D F L+ S E + EQ A +AHNA+FD F+ +E ++ Sbjct: 80 LRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDHSFVMQASERSKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ ++ H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMDFDNKEAHSALYDTQKTAELFCG 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|326800820|ref|YP_004318639.1| DNA polymerase III subunit epsilon [Sphingobacterium sp. 21] gi|326551584|gb|ADZ79969.1| DNA polymerase III, epsilon subunit [Sphingobacterium sp. 21] Length = 463 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 9/156 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65 M + DIETTG + I EI A+ + D + ++ + P + + P + L GI Sbjct: 1 MEYAIVDIETTGGHAAGHGITEI-AICIHDGAGICHRYETLVNP--QAHIPLHISALTGI 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++E + D P+F+ I + + + ++AHN FD FI L P + Sbjct: 58 SNEMVADAPTFAEIAATVYQLL--EGRIFVAHNVNFDYSFIKHHLAFCGYSWNAPK--LC 113 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160 T+ ++R+ P + L LC++ I+I++R + G Sbjct: 114 TVRLSRKVLPGFASYSLGKLCQQLNISITNRHRAGG 149 >gi|170769422|ref|ZP_02903875.1| exodeoxyribonuclease X [Escherichia albertii TW07627] gi|170121746|gb|EDS90677.1| exodeoxyribonuclease X [Escherichia albertii TW07627] Length = 220 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVVD-GKIVNPMSHLVRPD-RPITPQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|238787143|ref|ZP_04630943.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641] gi|238724931|gb|EEQ16571.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641] Length = 228 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 22/200 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVDPFEGANLQPEALAFNG 90 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF +Q A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEYDALHAIFKAVRKGLKDQGCNRAIIVAHNAHFDHSFVMAAAERASLK 150 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ + ++ ++ Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCEL 208 Query: 175 M-----VGGSQINFGFKTNE 189 + +GG + G +E Sbjct: 209 VNRWKKLGGWPVPAGESESE 228 >gi|172057786|ref|YP_001814246.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Exiguobacterium sibiricum 255-15] gi|171990307|gb|ACB61229.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sibiricum 255-15] Length = 937 Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%) Query: 10 IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG K+ D +IEIG + D T R F+ P + P +L GITDE Sbjct: 6 VVVDLETTGHSIKSGDEMIEIGVAVIEDGQITER-LSAFVRPQ-KPIPPFISQLTGITDE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + SF++I + ++AHN +FD+ F+N L+ P +IDT+ Sbjct: 64 DVAQAESFATIAPRVLQLLD--GGVFVAHNVQFDLTFLNEALEEEGYLPYT-GPVIDTVE 120 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164 +AR P++ + L+ L + + ++H H A D+ Sbjct: 121 LARILLPTAESHSLSHLTE--ALQLTHHEAHRAGSDA 155 >gi|269104806|ref|ZP_06157502.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268161446|gb|EEZ39943.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 249 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 13/187 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGLDS+ D+II +G V LD ++ + P+ N E++ +HGITD Sbjct: 60 VALDLETTGLDSQQDQIISVGLVPFTLDRIYCRQSAHWVVNPHRLLNE-ESVVIHGITDS 118 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDTL 127 ++D P I + + + H + GF+N A L+R+ + P ++DTL Sbjct: 119 EVQDAPDLRVILEQVLQALAGKIV--VVHYKNIERGFLNQALLKRLGEGIEFP--VVDTL 174 Query: 128 SI-ARRKHPSSRNDLNSL-CKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGGSQI 181 + A ++ R N L K+ G + + H R ++G H L+D + +Q+ Sbjct: 175 DLEAAIQYRQCRGFFNRLKGKKPGSVRLGHARERYGLPTYQPHHALTDALASAELLQAQL 234 Query: 182 NFGFKTN 188 + F N Sbjct: 235 AYYFTPN 241 >gi|237798772|ref|ZP_04587233.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021625|gb|EGI01682.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6] Length = 225 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 22/191 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + +D + T+ + P G AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ ++ + + IF + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAINDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ GI R H A D+ ++++ + Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210 Query: 175 M-----VGGSQ 180 + +GG Q Sbjct: 211 VNRWKEMGGWQ 221 >gi|205352416|ref|YP_002226217.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856601|ref|YP_002243252.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272197|emb|CAR37055.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708404|emb|CAR32708.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627468|gb|EGE33811.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 232 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 +RR P + SL K +++ H AL D ++ + + I +M Sbjct: 103 SRRLWPGIKYSNMSLYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|319896653|ref|YP_004134846.1| ribonuclease t [Haemophilus influenzae F3031] gi|317432155|emb|CBY80506.1| ribonuclease T [Haemophilus influenzae F3031] Length = 229 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 20/190 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L +D Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73 Query: 56 SPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R + ++P P + DT S++ + L C I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLSGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMM 175 ++++ M+ Sbjct: 192 RTAELFCYMV 201 >gi|293396307|ref|ZP_06640585.1| ribonuclease T [Serratia odorifera DSM 4582] gi|291421096|gb|EFE94347.1| ribonuclease T [Serratia odorifera DSM 4582] Length = 226 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 22/195 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET G +++ D ++EI AV L +D + + + T + P G PEAL +G Sbjct: 31 VVIDIETAGFNARTDALLEIAAVTLKMDQDGWLQQDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF +Q A +AHNA FD F+ A +R + Sbjct: 91 IDPHNPLRGAVSEYDALHAIFKAVRKGIKDQGCNRAIIVAHNANFDHSFLMAAAERAGLK 150 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C G+ H AL D+ + ++ ++ Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAAGMAFDSSQAHSALYDTEQTALLFCEL 208 Query: 175 M-----VGGSQINFG 184 + +GG + G Sbjct: 209 VNRWKRLGGWPLAVG 223 >gi|254558840|ref|YP_003065935.1| hypothetical protein METDI0201 [Methylobacterium extorquens DM4] gi|254266118|emb|CAX21870.1| hypothetical protein, putative exonuclease domain [Methylobacterium extorquens DM4] Length = 297 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 10/170 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET + + D +G + ++ + R + P + SP +++HGI Sbjct: 1 MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P+F + +EF + +AHNA FD+G + A L +P+ T Sbjct: 58 PADVRDAPTFPEVIAEF--LPDLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L IARR P + + L + R GI H H A D+ +++ + + Sbjct: 115 LQIARRVFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAAL 161 >gi|312172307|emb|CBX80564.1| ribonuclease T [Erwinia amylovora ATCC BAA-2158] Length = 224 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+K + ++EI AV L +D + + + T + P G EAL +G Sbjct: 22 VVIDVETAGFDAKTNALLEIAAVTLKMDSEGWLEKDETLHFNVEPFPGSVMLAEALAFNG 81 Query: 65 ITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD+ F+NA +R + Sbjct: 82 IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 141 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C G++ H AL D+ +D++ ++ Sbjct: 142 RNPFHPFVTFDTAALSGLVL--GQTVLAKACNAAGMSFDSAQAHSALYDTLQTADLFCEL 199 Query: 175 M 175 + Sbjct: 200 V 200 >gi|224476950|ref|YP_002634556.1| hypothetical protein Sca_1466 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421557|emb|CAL28371.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 185 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 9/166 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + K I +G V+++D ++ TF + PN S + + +HGI E Sbjct: 8 VALDFETA--NGKRTSICSVGMVKVVD-NEIVETFYTLVNPNDYF-SQQNINVHGIQPED 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F+ + F +N +AHNA FD+ ++A +Q + D + + +L + Sbjct: 64 VATAPVFNFVLPYMLQFI--ENLPVVAHNAAFDMTVLHASIQALGLDTPEMTYFC-SLQL 120 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR ++R LN + + Y + H AL D+ + + +++ Sbjct: 121 ARRTVNANRYGLNHMMEYYHLDF--HGHHDALNDAKACAMITFRLL 164 >gi|240136987|ref|YP_002961456.1| hypothetical protein MexAM1_META1p0217 [Methylobacterium extorquens AM1] gi|240006953|gb|ACS38179.1| hypothetical protein, putative exonuclease domain [Methylobacterium extorquens AM1] Length = 297 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 10/170 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET + + D +G + ++ + R + P + SP +++HGI Sbjct: 1 MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P+F + +EF + +AHNA FD+G + A L +P+ T Sbjct: 58 PADVRDAPTFPEVIAEF--LPDLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L IARR P + + L + R GI H H A D+ +++ + + Sbjct: 115 LQIARRVFPDPAGHGLAKVASRLGIRFEH---HDAGEDAFACAEIALAAL 161 >gi|322389907|ref|ZP_08063447.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus parasanguinis ATCC 903] gi|321143343|gb|EFX38781.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus parasanguinis ATCC 903] Length = 836 Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 90/175 (51%), Gaps = 10/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ + K + + D+E T S N +II++G V +++ + ++++ + P+ R + Sbjct: 19 IMTRQKRKYAIVDLEATSAGS-NAKIIQVGIV-IIEDGRIRQSYETDVNPHERLDE-HIK 75 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD LK P F+ + E ++ ++A ++AHN KFD + L + P Sbjct: 76 QLTGLTDARLKKAPEFAQVAKEIFELI--EDAVFVAHNVKFDANLLAEALFWEGFELTTP 133 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +++ +P+ R +L +L I + H H AL D+ + + +K+ Sbjct: 134 R--IDTVELSQIFYPTLERYNLGALAAELEIELHH--AHSALADAMATAQLLLKL 184 >gi|253688762|ref|YP_003017952.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755340|gb|ACT13416.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 223 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++E+ AV L +D + + + T + P G P AL +G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + IF EQN A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEYDALHEIFKVVRKGIKEQNCNRAIIVAHNATFDHSFMMAAAERCSLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D++ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|294140554|ref|YP_003556532.1| ribonuclease T [Shewanella violacea DSS12] gi|293327023|dbj|BAJ01754.1| ribonuclease T [Shewanella violacea DSS12] Length = 223 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S+ D ++EI AV +L ++T + P G P+AL + Sbjct: 20 VVIDVETAGFNSQTDALLEI-AVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFN 78 Query: 64 GI--TDEF---LKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 GI T+ + +K +F IF E + +AHNA FD GF++ ++R + Sbjct: 79 GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCAL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ L C GI + H AL D+ ++++ Sbjct: 139 KRTPFHPFATFDTAALSGLA--LGHTVLAKACSIAGIDFDNNEAHSALYDTERTAELFCH 196 Query: 174 MM 175 ++ Sbjct: 197 IV 198 >gi|315650464|ref|ZP_07903534.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Eubacterium saburreum DSM 3986] gi|315487260|gb|EFU77572.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Eubacterium saburreum DSM 3986] Length = 299 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 10/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ DIET GLD++ + IIE+GA++ S FQ + G + L GIT + Sbjct: 131 VIVDIETDGLDNEKNVIIEVGAIK--SVSGVLSEFQSLVNYEGTL-PKHIVSLTGITTDM 187 Query: 70 L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L KD + +F DF + + I +N FD+ FIN L + + L+ R D + Sbjct: 188 LKKDGSDIVVVLKDFVDFLGD--LDIIGYNIGFDIDFINIALLKSGLENLNNKR-YDLMR 244 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + N L ++ K YG + + H AL D+ ++ + +K+ Sbjct: 245 FVKNEKLFLENYKLQTVIKEYG--VGDKVPHRALEDAKMIYKLAMKV 289 >gi|163782941|ref|ZP_02177936.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1] gi|159881621|gb|EDP75130.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1] Length = 215 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 85/168 (50%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT-D 67 +VFD ETTGLD + ++ IGA+ +++YS + +F F+ P ++ + ++++HGIT Sbjct: 41 VVFDTETTGLDLRRAELVSIGALRVVNYSFNLSESFHRFVKP--KELTRVSVEIHGITPH 98 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E K S + +F ++ + + + N +FD + ++ PL R +D Sbjct: 99 ELEKKAESHDRVLEDFMEYV--RGSVLVGFNVEFDRKIVEKYSLKVLGLPLLNYR-LDVF 155 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +K L + + GI + H AL D+++ + V++K++ Sbjct: 156 RLW-KKRGGREGSLKDIAEELGIPVV--GAHSALDDAYITALVFLKLL 200 >gi|221195203|ref|ZP_03568259.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626] gi|221185106|gb|EEE17497.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626] Length = 1031 Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 10/149 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL K +IEI A ++ R F+ F+ P + PE + L ITDE Sbjct: 65 VVLDTETTGLSFKTCGLIEISAAKISGREIVER-FETFVDPR-KPIPPEIVALTHITDED 122 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P S DF +AHNA FD FI +R+ + IDTLS+ Sbjct: 123 VAGAPRAKEAVSALADFVG--GLPVLAHNAVFDRTFI----ERVPGGHEVSNTWIDTLSL 176 Query: 130 ARRKHPS-SRNDLNSLCKRYG-ITISHRS 156 +R P S + L+ + + +G + ++HR+ Sbjct: 177 SRIALPRLSSHKLSRMAEAFGALRVTHRA 205 >gi|229102245|ref|ZP_04232954.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-28] gi|228681146|gb|EEL35314.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-28] Length = 934 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPVFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|94499178|ref|ZP_01305716.1| ribonuclease T [Oceanobacter sp. RED65] gi|94428810|gb|EAT13782.1| ribonuclease T [Oceanobacter sp. RED65] Length = 222 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 22/206 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S+ D ++EI V ++D + + P G AL Sbjct: 19 VVVDVETAGFNSQTDALLEIAMV-IMDMDEQGNMLPGPAMSAHIKPFEGANLEQSALDFT 77 Query: 64 GITDEFLKDK------PSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR-- 112 GI D F D+ P+ +F + A + HNA FD+GF+NA ++R Sbjct: 78 GI-DPFDPDRRAEDEGPALKDMFKTIRKAMKVKGCKRAILVGHNAHFDLGFLNAAIERNN 136 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P P DT +++ L CK GI + S H AL D+ ++++ Sbjct: 137 IKRSPFHPFSGFDTATLSGLA--LGHTVLARSCKLAGIDFDNHSAHSALYDTQKTAELFA 194 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKK 198 ++ Q+ G+ ++ KE +K Sbjct: 195 LIVNKWKQLG-GWDWAYEQHVKENEK 219 >gi|50954845|ref|YP_062133.1| DNA polymerase III subunit epsilon [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951327|gb|AAT89028.1| DNA polymerase III, epsilon subunit [Leifsonia xyli subsp. xyli str. CTCB07] Length = 227 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 10/151 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG+D + R++ + LLD + +L G + EA +HGI+ E Sbjct: 9 VFDLETTGVDVETARVV-TAHIGLLDEHGEIVHGRSWLLDPGVEIPAEASAVHGISTELA 67 Query: 71 KDKP-----SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRII 124 ++K + I + F ++ +A+NA +D ++ E +R +PL P II Sbjct: 68 REKGMDAARGIAGIVDQLRRLFA-RSVPVVAYNAPYDFSLLDREARRHGIEPLHSPGPII 126 Query: 125 DTLSIARR--KHPSSRNDLNSLCKRYGITIS 153 D L I R K + L YGI ++ Sbjct: 127 DPLVIDRAVDKFRPGKRTLTVTADHYGIVLT 157 >gi|313123567|ref|YP_004033826.1| 3'-5' exonuclease with to crispr-associated protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280130|gb|ADQ60849.1| 3'-5' exonuclease with to CRISPR-associated protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 290 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 13/168 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIETTGL++++D+I+ IGAV K + T L + ++L GIT Sbjct: 127 VAVDIETTGLNTESDQILSIGAV------KHDGTEFYRLIKQDIDVPKQIVELTGITPAM 180 Query: 70 L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L K+ + E DF + + +N +FD F+N E ++ L + I D L Sbjct: 181 LDKEGVPLQDVLGELTDFVGD--VPIVGYNFRFDSAFLNREYRKCGMQEL-KNEIKDLLP 237 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +RK N L ++ YG I ++ H A+ D+ ++ +K++ Sbjct: 238 VVKRKEKFLDNYKLQTVLSNYG--IENKVPHNAVSDARATKELAMKLI 283 >gi|307720491|ref|YP_003891631.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] gi|306978584|gb|ADN08619.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] Length = 269 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 6/134 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIET G + +IIE+ AV++ + +R F+ + + ++ +P ++ GI + Sbjct: 71 IVDIETNGSKIEKHQIIELAAVKVKNGQIIDR-FESLV--HTKEINPHITEITGIAADDT 127 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P + F F NA ++AH+ KFD FI+ LQ+I +PL +R + +L++A Sbjct: 128 TNAPQLKDVLIRFKLFLG--NAVFVAHDVKFDYSFISKSLQKIGLEPL-LNRSLCSLALA 184 Query: 131 RRKHPSSRNDLNSL 144 R S R L+ L Sbjct: 185 ERTVVSYRYALSYL 198 >gi|330004210|ref|ZP_08304836.1| exonuclease [Klebsiella sp. MS 92-3] gi|328536727|gb|EGF63048.1| exonuclease [Klebsiella sp. MS 92-3] Length = 180 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 6/165 (3%) Query: 12 FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEF 69 DIETTGLD +IIEI V + + + +V L N R+N +A +H I+ E Sbjct: 7 IDIETTGLDVYSGHKIIEIALVSY-ELETSRKINEVSLRFNPRRNIDAKAQAVHHISLEM 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P F + + W+AHN + FD+ FI +++ + L +IDT+ Sbjct: 66 LADCPLFEDKAASLAKALAAADV-WVAHNGRQFDIPFITKQMRDCGVE-LIQRPLIDTMD 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L L G HGAL D+ L+ +IK Sbjct: 124 ARWACESGKIPRLQELAVAMGFVYDEEKAHGALYDTDLMMQCFIK 168 >gi|254509159|ref|ZP_05121258.1| ribonuclease T [Vibrio parahaemolyticus 16] gi|219547910|gb|EED24936.1| ribonuclease T [Vibrio parahaemolyticus 16] Length = 213 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L +D S + T + P G EAL G Sbjct: 14 VVIDVETAGFNAKTDALLEICAVTLKMDDSGDLQPASTIHFHVEPFEGANIEKEALDFIG 73 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFI--NAELQRI 113 + D F L+ S E + EQ A +AHNA+FD F+ ++ ++ Sbjct: 74 LRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDHSFVMEASDRSKL 133 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + + L CK G+ ++ H AL D+ ++++ Sbjct: 134 KRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNKEAHSALYDTKKTAELFCG 191 Query: 174 MM 175 ++ Sbjct: 192 IV 193 >gi|213970865|ref|ZP_03398988.1| ribonuclease T [Pseudomonas syringae pv. tomato T1] gi|213924388|gb|EEB57960.1| ribonuclease T [Pseudomonas syringae pv. tomato T1] Length = 203 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQV--FLCPNGRKNSPE--A 59 +V D+ET G +S D ++EI AV + + + F+V F+ N + E Sbjct: 11 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 70 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114 +KL + ++ + + IF A + HNA FD+GF+NA + R++ Sbjct: 71 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 130 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ GI R H A D+ ++++ + Sbjct: 131 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 188 Query: 175 M 175 + Sbjct: 189 V 189 >gi|163849777|ref|YP_001637820.1| exonuclease RNase T and DNA polymerase III [Methylobacterium extorquens PA1] gi|163661382|gb|ABY28749.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium extorquens PA1] Length = 297 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 10/170 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET + + D +G + ++ + R + P + SP +++HGI Sbjct: 1 MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P+F + +EF + +AHNA FD+G + A L +P+ T Sbjct: 58 PADVRDAPTFPEVIAEF--LPDLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L IARR P + + L + R GI H H A D+ +++ + + Sbjct: 115 LQIARRVFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAAL 161 >gi|229096133|ref|ZP_04227106.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-29] gi|229115089|ref|ZP_04244499.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-3] gi|228668229|gb|EEL23661.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-3] gi|228687093|gb|EEL40998.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-29] Length = 934 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFVNPK-REIPVFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|283955874|ref|ZP_06373364.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283792534|gb|EFC31313.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 253 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 9/145 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 + DIE+TG SK + I+EIGAV++ + + R FQ F+ K PE + +L GIT E Sbjct: 74 IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPENITELTGITYEM 128 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ S + + S+F F +++ ++AHN +FD FI+ L L RI T+ Sbjct: 129 VENALSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185 Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154 A+ S + L L + G+ +H Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENTH 210 >gi|215405762|ref|ZP_03417943.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 02_1987] gi|215413638|ref|ZP_03422306.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 94_M4241A] gi|215448050|ref|ZP_03434802.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85] gi|289747550|ref|ZP_06506928.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 02_1987] gi|289759871|ref|ZP_06519249.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85] gi|294995379|ref|ZP_06801070.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 210] gi|298527188|ref|ZP_07014597.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis 94_M4241A] gi|289688078|gb|EFD55566.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 02_1987] gi|289715435|gb|EFD79447.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85] gi|298496982|gb|EFI32276.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis 94_M4241A] gi|326905550|gb|EGE52483.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis W-148] Length = 329 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 D+P F+ I E D + +AHN FD F+ AE + + P+D ++ T+ + Sbjct: 75 DDQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L +G + + H A D +L+ + + Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDVRVLTGILAAAL 175 >gi|27468061|ref|NP_764698.1| dinG protein [Staphylococcus epidermidis ATCC 12228] gi|57866955|ref|YP_188602.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus epidermidis RP62A] gi|251810883|ref|ZP_04825356.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis BCM-HMP0060] gi|282876111|ref|ZP_06284978.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus epidermidis SK135] gi|293366576|ref|ZP_06613253.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|81819394|sp|Q5HP88|DING_STAEQ RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81842831|sp|Q8CP71|DING_STAES RecName: Full=Probable ATP-dependent helicase dinG homolog gi|27315606|gb|AAO04740.1|AE016747_237 dinG protein [Staphylococcus epidermidis ATCC 12228] gi|57637613|gb|AAW54401.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus epidermidis RP62A] gi|251805563|gb|EES58220.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis BCM-HMP0060] gi|281295136|gb|EFA87663.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus epidermidis SK135] gi|291319345|gb|EFE59714.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|329725381|gb|EGG61864.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU144] gi|329735254|gb|EGG71546.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU045] gi|329737465|gb|EGG73719.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU028] Length = 902 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I +E Sbjct: 8 VVDLETTGNQLDYDEIIQIG----ITFVRQNQVIDTYHSMIRTDLEIPPFIQALTSIEEE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + + + ++ ++AHN FD+ FI ++ N P R++DTL Sbjct: 64 MLVQAPYFNEVADDIYQLI--KDCVFVAHNISFDLNFIKKAFEKCNI-QFKPKRVMDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 + + P+ ++ L++L + + I + +HR+ A + L+ Sbjct: 121 LFKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATTTAKLM 162 >gi|319400807|gb|EFV89026.1| putative dnaQ family exonuclease/DinG family helicase [Staphylococcus epidermidis FRI909] Length = 902 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I +E Sbjct: 8 VVDLETTGNQLDYDEIIQIG----ITFVRQNQVIDTYHSMIRTDLEIPPFIQALTSIEEE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + + + ++ ++AHN FD+ FI ++ N P R++DTL Sbjct: 64 MLVQAPYFNEVADDIYQLI--KDCVFVAHNISFDLNFIKKAFEKCNI-QFKPKRVMDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 + + P+ ++ L++L + + I + +HR+ A + L+ Sbjct: 121 LFKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATTTAKLM 162 >gi|312884148|ref|ZP_07743860.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC BAA-2122] gi|309368196|gb|EFP95736.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC BAA-2122] Length = 239 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 23/192 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67 + D ETTGLDS +D II IG V +D N+ + P RK P E++ +HGIT Sbjct: 50 LAMDFETTGLDSNDDDIITIGTVPFTIDRIMINKAKHWTVKP--RKQLPEESVVIHGITH 107 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQ-RINKDPLDPSRII 124 + D P S ++ E EQ A + H + + F + L+ RIN+ P +I Sbjct: 108 SDILDAPDLSGVYREVL----EQMAGKVMVVHYQRIEREFFDKALKTRINEGIEFP--VI 161 Query: 125 DTL---SIARRKHPSSRNDLNSLCKRYGITI---SHRSKHGALL--DSHLLSDVYIKMMV 176 DT+ +IA++K S +N L +R ++ + RS++G L H L+D + Sbjct: 162 DTMQLETIAQQKMTSGL--INRLKRRQPESVRLGASRSRYGLPLYPPHHALTDAVATAEL 219 Query: 177 GGSQINFGFKTN 188 +QI +K N Sbjct: 220 LQAQIAHHYKRN 231 >gi|226330322|ref|ZP_03805840.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198] gi|225201117|gb|EEG83471.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198] Length = 212 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + K + T + P G P AL+ G Sbjct: 20 VVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVEPFEGANLEPAALEFTG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF + + A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKMVRKGMKDADCNRAIIVAHNANFDHSFVMAAAERAGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI + HGAL D++ S ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTILAKACITAGIPFDSKLAHGALYDTNRTSLLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|171780060|ref|ZP_02920964.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281408|gb|EDT46843.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 827 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 88/175 (50%), Gaps = 10/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + V D+E TG + + II++G V +++ + +T+Q + P+ + + Sbjct: 1 MMQVNSQKYAVVDLEATGAHAMAE-IIQVGIV-IIENDQIVKTYQTDVNPH-EALTEHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + E + + + ++AHN KFD + +L + P Sbjct: 58 HLTGITDEQLAKAPDFSKVAQEIYHLIS--DCVFVAHNVKFDANLLAEKLFLEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++DT+ +++ +P+ + L L + ++ H A+ D++ + + +K+ Sbjct: 116 --LVDTVELSQVFYPTLEKYTLGHLADVLQLDLT--DAHTAISDAYATAQLLLKL 166 >gi|157374891|ref|YP_001473491.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis HAW-EB3] gi|157317265|gb|ABV36363.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis HAW-EB3] Length = 228 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 15/163 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+E TGLD +D+I+ IG + + + +R Q + NG + ++ +HGI D Sbjct: 44 MAVDLEMTGLDPNSDQILSIGLIPIEKGLLQLSRAEQKLIQING--SVGQSATIHGIVDH 101 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ S S F D + +AH++ D+GF+ ++++ + + IDTL+ Sbjct: 102 QLQAGVSIDSAIEWFLD--RTRGKLLVAHHSPLDLGFLQVAIKQVTGESIKL-LAIDTLA 158 Query: 129 IARRKHPSSRNDLN------SLCK-RYGITISHRSKHGALLDS 164 + R++ ++ L C+ RYG+ + + H AL+D+ Sbjct: 159 LERKRLLRKQDVLKEGTLRLGACRARYGLPV--YAAHNALVDA 199 >gi|28871300|ref|NP_793919.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000] gi|301384500|ref|ZP_07232918.1| ribonuclease T [Pseudomonas syringae pv. tomato Max13] gi|302130507|ref|ZP_07256497.1| ribonuclease T [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999382|sp|Q87XM0|RNT_PSESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|28854550|gb|AAO57614.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000] gi|331015669|gb|EGH95725.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 225 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQV--FLCPNGRKNSPE--A 59 +V D+ET G +S D ++EI AV + + + F+V F+ N + E Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 92 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114 +KL + ++ + + IF + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ GI R H A D+ ++++ + Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 210 Query: 175 M 175 + Sbjct: 211 V 211 >gi|269960762|ref|ZP_06175133.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834426|gb|EEZ88514.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 238 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 10/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGLDS+ D I+ IG V++ + T Q + + PE ++ IT + Sbjct: 52 IVLDLETTGLDSEEDLILSIGWVDIANGKVDLATSQHMYINSDSQIKPETAVINHITPQM 111 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + S F F + +AH + FIN L R+ K P +DT+ I Sbjct: 112 LSEGVSIHDAMRAF--FHAAKGKILVAHACVVETQFINQYLHRVFKLSEPPLVWLDTMCI 169 Query: 130 AR--RKHPSSRND----LNSLCKRYGITISHRSKHGALLDS 164 + +K + R++ L+ RYG + + H AL D+ Sbjct: 170 EKHLQKAINPRDEIDVTLSGTRARYG--LPEYNGHNALADA 208 >gi|242242736|ref|ZP_04797181.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis W23144] gi|242233872|gb|EES36184.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis W23144] Length = 902 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I +E Sbjct: 8 VVDLETTGNQLDYDEIIQIG----ITFVRQNQVIDTYHSMIRTDLEIPPFIQALTSIEEE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + + + ++ ++AHN FD+ FI ++ N P R++DTL Sbjct: 64 MLVQAPYFNEVADDIYQLI--KDCVFVAHNISFDLNFIKKAFEKCNI-QFKPKRVMDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 + + P+ ++ L++L + + I + +HR+ A + L+ Sbjct: 121 LFKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATTTAKLM 162 >gi|148653458|ref|YP_001280551.1| ribonuclease T [Psychrobacter sp. PRwf-1] gi|148572542|gb|ABQ94601.1| RNAse T [Psychrobacter sp. PRwf-1] Length = 274 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 20/191 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL--DYSK--TNRTFQVFLCP-NGRKNSP 57 R K +V D+ET G ++ D ++EI + ++ D K L P G Sbjct: 56 RFRKFLPVVVDVETAGFNAATDALLEIACIPIVMDDEGKFVPGEPLSAHLNPFEGANLEQ 115 Query: 58 EALKLHGITDE-------FLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFIN 107 AL GI +++P+ IF E + + + HNA FD+ F+N Sbjct: 116 RALDFTGIDPNNPMRKAIAEEEQPALRRIFKELKAVRKDNDCLKCILVGHNAHFDLSFLN 175 Query: 108 AELQRINK---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A ++R N +P ++DT++++ + L C+ GI H AL D+ Sbjct: 176 AAIERTNSKNHNPFHQFSVLDTVTLSALAF--GQTVLARACRAAGIEFDGSEAHSALYDT 233 Query: 165 HLLSDVYIKMM 175 ++++ K++ Sbjct: 234 QKTAELFCKIL 244 >gi|327440746|dbj|BAK17111.1| Rad3-related DNA helicase [Solibacillus silvestris StLB046] Length = 926 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 4 KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK- 61 K + + DIETTG + DR+I+I A+ ++ + + + F+ P K P ++ Sbjct: 2 KESQKYAIVDIETTGHSPASGDRMIQI-AIVIMQGWEIVKKYSTFINPG--KPIPLFIQD 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE +KD F + ++ + A ++AHN FD+ F+ AE R Sbjct: 59 LTNITDEDVKDALPFEAYADYIYELL--EGAVFVAHNTDFDLNFLQAEFNRAGLSKWHGK 116 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKMM 175 + IDT+ + + P S + L+ L + I + +HR+ AL ++LL + +++ Sbjct: 117 K-IDTVELTKILFPMSLSYKLSDLANDFNILLQSAHRADDDALATAYLLKHCWEELL 172 >gi|312887472|ref|ZP_07747071.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM 18603] gi|311300112|gb|EFQ77182.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM 18603] Length = 456 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 9/167 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI + ++ TNR F+ + P G L GI ++ + Sbjct: 4 IVDIETTGGHASAHGITEIAIIIHDGHTITNR-FETLINP-GMLIPMHIQVLTGIDNDMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K+ P FSSI ++ + ++AHN FD F+ L D P + T+ + Sbjct: 62 KNAPPFSSIAQHVYEIL--EPCTFVAHNVNFDYSFVKHHLMASGYDLQSPK--LCTVRLG 117 Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 R+ P L C GI S R H A+ D+ + ++ M++ Sbjct: 118 RKIFPGLPSYSLGKFCGHMGIDNSAR--HRAMGDADATAKLFSMMLL 162 >gi|283954255|ref|ZP_06371779.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 414] gi|283794273|gb|EFC33018.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 414] Length = 253 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 9/145 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 + DIE+TG SK + I+EIGAV++ + + R FQ F+ K PE + +L GIT E Sbjct: 74 IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFI---KVKEIPENITELTGITYEM 128 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P + + S+F F +++ ++AHN +FD FI+ L L RI T+ Sbjct: 129 VENAPILAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185 Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154 A+ S + L L + I +H Sbjct: 186 AQCCIESPKYKLEVLKELLSIENTH 210 >gi|226308478|ref|YP_002768438.1| exonuclease [Rhodococcus erythropolis PR4] gi|226187595|dbj|BAH35699.1| putative exonuclease [Rhodococcus erythropolis PR4] Length = 241 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 9/149 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG D RI+ V ++D S N + +L G +A +HGI+ E+ Sbjct: 25 CAFDLETTGRDPSTARIVS-ACVAVIDGS--NVETRTWLLDPGVDIPADASAIHGISTEY 81 Query: 70 -LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +++ + E D + A +A NA +D+ ++AE RI K P +ID Sbjct: 82 AARHGQNYAEGYEEIRDALHNSWARDHAVVAFNASYDLTVMHAEGLRIGKPAFVPGLVID 141 Query: 126 TLSIARRKHP--SSRNDLNSLCKRYGITI 152 I R + L ++C+ YGI++ Sbjct: 142 PYVIDRAMDTFRKGKRTLAAVCEHYGISL 170 >gi|320547177|ref|ZP_08041471.1| DNA polymerase III [Streptococcus equinus ATCC 9812] gi|320448164|gb|EFW88913.1| DNA polymerase III [Streptococcus equinus ATCC 9812] Length = 827 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 89/175 (50%), Gaps = 10/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + V D+E TG + + II++G V +++ K +T+Q + P+ + + Sbjct: 1 MMQVNSQKYAVVDLEATGAHAMAE-IIQVGIV-IIENKKIVKTYQTDVNPH-EPLTEHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + + ++ + + ++AHN KFD + +L + P Sbjct: 58 NLTGITDEQLAKAPDFSQVAQKIYNMIS--DCVFVAHNVKFDANLLAEKLFLEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++DT+ +++ +P+ + L L + ++ H A+ D++ + + +K+ Sbjct: 116 --LVDTVELSQVFYPTLEKYTLGHLADVLQLDLT--DAHTAISDAYATAQLLLKL 166 >gi|269796146|ref|YP_003315601.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] gi|269098331|gb|ACZ22767.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] Length = 241 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 84/205 (40%), Gaps = 25/205 (12%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTG+D DRI+ V + RT +L G PEA +HGIT E + Sbjct: 11 FDTETTGVDVSEDRIVSAALVRRHVGTTEVRT---WLLDPGVPIPPEASSIHGITTEVAR 67 Query: 72 DK-----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP------ 120 + + I E +E +A NA FD+ + AEL+R L+ Sbjct: 68 AEGQDPAGALDEIAKEIAAALSE-GIPVVAFNATFDLCILQAELRRYGLQTLEERTGAEV 126 Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + +ID L + R ++ + L LC YGI H A +D DV M+ Sbjct: 127 APVIDPLVLDRAVDRYRRGKRKLVDLCGVYGIE-GDGELHTADVDVLATLDVLGAMVTQY 185 Query: 179 SQIN-------FGFKTNEDRFFKEE 196 +I G++ E R + E+ Sbjct: 186 PEIGARTLQDLHGYQATEHRRWAED 210 >gi|254291880|ref|ZP_04962663.1| ribonuclease T [Vibrio cholerae AM-19226] gi|150422240|gb|EDN14204.1| ribonuclease T [Vibrio cholerae AM-19226] Length = 224 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD F+ A +R + Sbjct: 80 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|229505395|ref|ZP_04394905.1| ribonuclease T [Vibrio cholerae BX 330286] gi|229510935|ref|ZP_04400414.1| ribonuclease T [Vibrio cholerae B33] gi|229512432|ref|ZP_04401905.1| ribonuclease T [Vibrio cholerae TMA 21] gi|229518056|ref|ZP_04407500.1| ribonuclease T [Vibrio cholerae RC9] gi|229529900|ref|ZP_04419290.1| ribonuclease T [Vibrio cholerae 12129(1)] gi|229608414|ref|YP_002879062.1| ribonuclease T [Vibrio cholerae MJ-1236] gi|255744788|ref|ZP_05418739.1| ribonuclease T [Vibrio cholera CIRS 101] gi|262151277|ref|ZP_06028413.1| ribonuclease T [Vibrio cholerae INDRE 91/1] gi|262167159|ref|ZP_06034872.1| ribonuclease T [Vibrio cholerae RC27] gi|14548237|sp|Q9KT97|RNT_VIBCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|229333674|gb|EEN99160.1| ribonuclease T [Vibrio cholerae 12129(1)] gi|229344771|gb|EEO09745.1| ribonuclease T [Vibrio cholerae RC9] gi|229350513|gb|EEO15460.1| ribonuclease T [Vibrio cholerae TMA 21] gi|229350900|gb|EEO15841.1| ribonuclease T [Vibrio cholerae B33] gi|229357618|gb|EEO22535.1| ribonuclease T [Vibrio cholerae BX 330286] gi|229371069|gb|ACQ61492.1| ribonuclease T [Vibrio cholerae MJ-1236] gi|255737819|gb|EET93213.1| ribonuclease T [Vibrio cholera CIRS 101] gi|262024380|gb|EEY43068.1| ribonuclease T [Vibrio cholerae RC27] gi|262030968|gb|EEY49596.1| ribonuclease T [Vibrio cholerae INDRE 91/1] Length = 224 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD F+ A +R + Sbjct: 80 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|220913226|ref|YP_002488535.1| DNA polymerase III subunit epsilon [Arthrobacter chlorophenolicus A6] gi|219860104|gb|ACL40446.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] Length = 236 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 90/193 (46%), Gaps = 20/193 (10%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N + + FD+ETTG +S+ RI+ +V ++D+ +L G + EA +HG Sbjct: 5 NTLPRAAFDLETTGRNSRAARIV-TASVTVVDHRGEVIREHEWLADPGVEIPTEASDVHG 63 Query: 65 ITDEFLK--DKPS------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 +T E + +P+ +++ E +D IA NA +D + AE R Sbjct: 64 VTTEQARKDGRPAHEVTRELAAVLQELFD----TGVPVIAFNASYDFTVLAAESARYGVP 119 Query: 117 PLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDV-- 170 L ++D + ++ ++ + L +LC+ YG+ + +H S AL +L + Sbjct: 120 QLTRFPVLDPYIMNKQVDRYRKGKRTLTALCEEYGVVLDNAHTSAADALATLKVLDAMAG 179 Query: 171 -YIKMMVGGSQIN 182 + K+M+ SQ++ Sbjct: 180 KFPKLMMPASQLH 192 >gi|81428523|ref|YP_395523.1| ATP-dependent helicase [Lactobacillus sakei subsp. sakei 23K] gi|78610165|emb|CAI55214.1| Putative ATP-dependent helicase, DinG family [Lactobacillus sakei subsp. sakei 23K] Length = 944 Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 17/170 (10%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG + K+ DRII+ G L+ K +T + P ++ P ++ L IT + Sbjct: 9 VVDLETTGTNIKDGDRIIQFGCA-LVQNGKIIQTISQDVNP--LRDVPTKIQHLTHITAD 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + + + ++AHN FD+ F+N EL R+ PLD + IDT+ Sbjct: 66 QLELAPIFEDLAPTLVEILS--GTVFVAHNINFDLPFLNGELTRVGLQPLDLAG-IDTVE 122 Query: 129 IAR---RKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A+ + PS R DL L + I H + H A D+ + + +++K+ Sbjct: 123 LAQIILPEAPSYRLQDLTQL-----LEIEHDNPHQADSDALVTAKLFLKL 167 >gi|313843978|ref|YP_004061641.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus OlV1] gi|312599363|gb|ADQ91385.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus OlV1] Length = 447 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 18/143 (12%) Query: 7 MRKIVFDIETTGL---------------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 M I FD ET+GL + R + + A + +TF + P+ Sbjct: 5 MNYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIRPD 64 Query: 52 GRKNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 G + E++ +HGI++E L + F ++ +F +F + +AHNA+FD + +E+ Sbjct: 65 GFQIGEESIAIHGISNEKALSEGRPFPEVYRDFMEFIGPRTKTLVAHNAQFDTSVLQSEM 124 Query: 111 QR--INKDPLDPSRIIDTLSIAR 131 R I + +D I TL + R Sbjct: 125 LRHGIPLEQIDDLVIRCTLEMYR 147 >gi|260597773|ref|YP_003210344.1| ribonuclease T [Cronobacter turicensis z3032] gi|260216950|emb|CBA30569.1| Ribonuclease T [Cronobacter turicensis z3032] Length = 223 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF E N A +AHNA FD F+ A +R + Sbjct: 80 IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLAKACIAAGMPFDSAQAHSALYDTEQTALLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|149188401|ref|ZP_01866694.1| DNA polymerase III, epsilon subunit [Vibrio shilonii AK1] gi|148837619|gb|EDL54563.1| DNA polymerase III, epsilon subunit [Vibrio shilonii AK1] Length = 197 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 16/180 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFL-CPNGRKNSPEA 59 + ++ +V D ETTGLD+ + I+ +G VE+ +++ Q+F+ PN K E Sbjct: 3 VLATEVEYLVLDFETTGLDANTNTILSLGWVEIANFTVNVASAKQLFIESPNEVK--AET 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPL 118 ++ I E L+D S S ++ F +N IAH + + F++ L Q+ L Sbjct: 61 AVINHIMPEMLQDGISLDSAMTQL--FQAAKNKILIAHGSMIEAAFVDEYLTQKYGVSDL 118 Query: 119 DPSRIIDTLSIARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +DTL+I + + D L+ KRYG + + H AL+D+ +++++ Sbjct: 119 -PVMWLDTLAIEKSMALAVNKDAEIDVRLSETRKRYG--LPEYNGHEALIDAIATAELFL 175 >gi|315925789|ref|ZP_07921996.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263] gi|315620898|gb|EFV00872.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263] Length = 158 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 10/112 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDE 68 +V D+ET GLD+ +RIIEIGAV++ +T TF Q+ + P+ + + GITD Sbjct: 49 VVIDLETDGLDAAKNRIIEIGAVKV--DGQTVSTFEQLIVHPH--RLPKKITDPTGITDT 104 Query: 69 FLKD--KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 L D +P +I F F + I ++ FDV FIN L R++ +PL Sbjct: 105 LLADGGRPEAEAI-KAFLAFIGSDD--LIRYHVDFDVQFINQTLHRMDIEPL 153 >gi|147675730|ref|YP_001216478.1| ribonuclease T [Vibrio cholerae O395] gi|153216049|ref|ZP_01950254.1| ribonuclease T [Vibrio cholerae 1587] gi|153826220|ref|ZP_01978887.1| ribonuclease T [Vibrio cholerae MZO-2] gi|124114499|gb|EAY33319.1| ribonuclease T [Vibrio cholerae 1587] gi|146317613|gb|ABQ22152.1| ribonuclease T [Vibrio cholerae O395] gi|149740080|gb|EDM54249.1| ribonuclease T [Vibrio cholerae MZO-2] gi|227012823|gb|ACP09033.1| ribonuclease T [Vibrio cholerae O395] Length = 243 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G AL+ G Sbjct: 39 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD F+ A +R + Sbjct: 99 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 159 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 216 Query: 174 MM 175 ++ Sbjct: 217 IV 218 >gi|187932764|ref|YP_001885887.1| exonuclease [Clostridium botulinum B str. Eklund 17B] gi|187720917|gb|ACD22138.1| putative exonuclease [Clostridium botulinum B str. Eklund 17B] Length = 974 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 16/158 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK--LHGITD 67 I DIETTGLD N IIEIGAV++ + + T T++V + P ++N P ++ G+ + Sbjct: 12 IYLDIETTGLDENNCEIIEIGAVKIKNSNVT--TYEVLIRP--KRNVPISIYKLCQGLKE 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L + I +E F ++ I HN F+ F++ + I + D + L Sbjct: 68 EELMNSKYLEDIKNELLVFL--EDLPLICHNGGFERKFLSCHIPEIKNEIFDSMELSAIL 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDS 164 R+++ +L+SL K ITI + + H L DS Sbjct: 126 EPWRKEY-----NLDSLIK--SITILDKDEFHRGLEDS 156 >gi|156934185|ref|YP_001438101.1| ribonuclease T [Cronobacter sakazakii ATCC BAA-894] gi|166228564|sp|A7MFC6|RNT_ENTS8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|156532439|gb|ABU77265.1| hypothetical protein ESA_02012 [Cronobacter sakazakii ATCC BAA-894] Length = 223 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF E N A +AHNA FD F+ A +R + Sbjct: 80 IDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLAKACIAAGMPFDSTQAHSALYDTEQTALLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|330981566|gb|EGH79669.1| ribonuclease T [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 193 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + +D + T+ + P G AL+ G Sbjct: 1 MVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 60 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ ++ + + IF A + HNA FD+GF+NA + R++ Sbjct: 61 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 120 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ GI R H A D+ ++++ + Sbjct: 121 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGI 178 Query: 175 M 175 + Sbjct: 179 V 179 >gi|301026596|ref|ZP_07190019.1| exonuclease [Escherichia coli MS 69-1] gi|300395429|gb|EFJ78967.1| exonuclease [Escherichia coli MS 69-1] Length = 220 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I++I +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVDIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|225849248|ref|YP_002729412.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense Az-Fu1] gi|225643190|gb|ACN98240.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense Az-Fu1] Length = 204 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 21/176 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-----FQVFLCPNGRKNSPEALKLHG 64 +VFD ETTGL+ K D I+ IGAV++ K NR F + P R+ + E +K+HG Sbjct: 35 VVFDTETTGLNPKTDDILSIGAVKI----KQNRILLNDRFYTVVKPE-REINEETIKIHG 89 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + L++ +F F + + + FDV IN ++I PL P++ I Sbjct: 90 LRKKDLENGIPIEKAIKDFLRFIGSR--PLVGYYIDFDVAMINKYTKKIIGIPL-PNKKI 146 Query: 125 DTLSIARRKH----PSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + P DL +S+ K G+ I KH AL D+ + +++K+ Sbjct: 147 EVSGMYYDYKIGTIPQGFVDLRFDSILK--GLKIPSFGKHDALNDAIMTGLIFLKL 200 >gi|156743855|ref|YP_001433984.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM 13941] gi|156235183|gb|ABU59966.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM 13941] Length = 232 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 9/124 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTGL+ + D ++ IG VE +D + R + + P+ +PE++++HG+ Sbjct: 37 VMDVETTGLNPRRDALLAIGLVE-IDEGRIRMDRRWYTLVHPPDDAPINPESIRIHGLLP 95 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDT 126 + ++ P ++ + + + H A D+GF+ ++R+ DP P+ IDT Sbjct: 96 QDVEHAPPLDAVVPDVLRRLTGRV--LVVHVADVDIGFLRQAMRRLYGVDPRGPA--IDT 151 Query: 127 LSIA 130 +A Sbjct: 152 ARLA 155 >gi|294628378|ref|ZP_06706938.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] gi|292831711|gb|EFF90060.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] Length = 242 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 13/152 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ AV + D T +L G EA +HG+T+E L Sbjct: 12 AFDTETTGVDVETDRIVS-AAVVVQDAPGTRPRVSRWLVNPGVPVPREATAVHGLTEERL 70 Query: 71 KDKPSF-SSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLD------P 120 + + + + E + EQ A + NA FD+ ++ EL+R L+ P Sbjct: 71 QRTGRWPAPVMYEIAEQLAEQAARGRPLVVMNAPFDLTLLDRELRRHRASSLERWFEGSP 130 Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGI 150 R++D + + ++ R L LC Y + Sbjct: 131 LRVLDPRVLDKHLDRYRKGRRTLTDLCAHYEV 162 >gi|145595801|ref|YP_001160098.1| hypothetical protein Strop_3286 [Salinispora tropica CNB-440] gi|145305138|gb|ABP55720.1| DNA polymerase III, epsilon subunit [Salinispora tropica CNB-440] Length = 607 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 15/180 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG I EIGAV++ + + P G P L GIT Sbjct: 55 VVVDLETTGGTPDGGGITEIGAVKVRGGEQLG-VLATLVNP-GTPVPPFVTVLTGITQSM 112 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P + + F +F +A +AHNA +DVGF+ A P R++DT ++ Sbjct: 113 LLPAPPITEVLPSFLEFL-PPDAVLVAHNAPYDVGFLKAACAAHGYRWPSP-RVLDTAAL 170 Query: 130 ARRKHPSSRNDLNSLCKRYGITISH-----RSKHGALLDSHLLSDVYIKMM--VGGSQIN 182 ARR +R+++ + +R G ++ R H AL D+ DV ++ +GG +++ Sbjct: 171 ARRV--LTRDEVPN--RRLGTLAAYFRTATRPTHRALDDALATVDVLHGLISRLGGHRVH 226 >gi|15641021|ref|NP_230652.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227081180|ref|YP_002809731.1| ribonuclease T [Vibrio cholerae M66-2] gi|254848136|ref|ZP_05237486.1| ribonuclease T [Vibrio cholerae MO10] gi|298498880|ref|ZP_07008687.1| ribonuclease T [Vibrio cholerae MAK 757] gi|9655469|gb|AAF94167.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227009068|gb|ACP05280.1| ribonuclease T [Vibrio cholerae M66-2] gi|254843841|gb|EET22255.1| ribonuclease T [Vibrio cholerae MO10] gi|297543213|gb|EFH79263.1| ribonuclease T [Vibrio cholerae MAK 757] Length = 243 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G AL+ G Sbjct: 39 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD F+ A +R + Sbjct: 99 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 159 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 216 Query: 174 MM 175 ++ Sbjct: 217 IV 218 >gi|297578613|ref|ZP_06940541.1| ribonuclease T [Vibrio cholerae RC385] gi|297536207|gb|EFH75040.1| ribonuclease T [Vibrio cholerae RC385] Length = 249 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G AL+ G Sbjct: 39 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD F+ A +R + Sbjct: 99 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 159 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 216 Query: 174 MM 175 ++ Sbjct: 217 IV 218 >gi|153823922|ref|ZP_01976589.1| ribonuclease T [Vibrio cholerae B33] gi|126518562|gb|EAZ75785.1| ribonuclease T [Vibrio cholerae B33] Length = 227 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G AL+ G Sbjct: 23 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 82 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD F+ A +R + Sbjct: 83 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 142 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 143 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 200 Query: 174 MM 175 ++ Sbjct: 201 IV 202 >gi|116873334|ref|YP_850115.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742212|emb|CAK21336.1| ATP-dependent helicase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 928 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 11/165 (6%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE--KPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K+ P F + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 APKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +AR +P L L +G + H H A D+ + +D Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161 >gi|121728127|ref|ZP_01681163.1| ribonuclease T [Vibrio cholerae V52] gi|121629595|gb|EAX62017.1| ribonuclease T [Vibrio cholerae V52] Length = 212 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G AL+ G Sbjct: 8 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 67 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD F+ A +R + Sbjct: 68 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 127 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 128 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 185 Query: 174 MM 175 ++ Sbjct: 186 IV 187 >gi|229523203|ref|ZP_04412610.1| ribonuclease T [Vibrio cholerae TM 11079-80] gi|229339566|gb|EEO04581.1| ribonuclease T [Vibrio cholerae TM 11079-80] Length = 224 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD F+ A +R + Sbjct: 80 IYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|170739960|ref|YP_001768615.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] gi|168194234|gb|ACA16181.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] Length = 186 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR + D ET + + D +G + D R ++ P+ R SP +++HGI Sbjct: 1 MRTLAIDFETA--NERRDSACAVGLAWIEDGRVVRREARLIRPPDLR-FSPFNIRVHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + D F + F A +AHNA FDVG + A L P + T Sbjct: 58 PEDVADAKPFGEAMAPFLPEI--AGALVLAHNASFDVGVLCAALAACGL-PRPRFTSLCT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +ARR+ P +R L L +R GI + H H A D+ + + + M Sbjct: 115 VQLARRQWPGEARYRLPILAERLGIPLRH---HDAGEDAFACAQIALAAM 161 >gi|72161118|ref|YP_288775.1| exonuclease [Thermobifida fusca YX] gi|71914850|gb|AAZ54752.1| exonuclease [Thermobifida fusca YX] Length = 516 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 30/182 (16%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGR-KNSPEALKLHGITDE 68 V D+ETTGL+ K R+ EI V + + + P +NS HGITD Sbjct: 23 VLDLETTGLNPKRGARVCEIAVVRMRGDGTVLDEYSTLVNPGSSIRNS----AFHGITDT 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++K PSF + + + + A + H F+ F+ AE R+ PL + TL Sbjct: 79 WVKTAPSFDQVAGDLLAYLD--GAIVVGHKLDFEEKFLAAEFARLGV-PLTGIPGLCTLV 135 Query: 129 IARRKHPSSRNDLNSLCKRYGITISH----------RSKHGALLDSHLLSDVYIKMMVGG 178 AR + RYG ++H ++H AL D+ L+ V +++ Sbjct: 136 AARYQ-----------LDRYGYRLAHLHHLLTGRWPTAEHSALGDARSLAAVLTELINAA 184 Query: 179 SQ 180 Q Sbjct: 185 PQ 186 >gi|268609211|ref|ZP_06142938.1| exonuclease [Ruminococcus flavefaciens FD-1] Length = 179 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 21/181 (11%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA------LK 61 R IVFD+ET N+ + IG + D + F + PE ++ Sbjct: 3 RYIVFDVETPNF--ANNHMSAIGITVVEDGRIADSFFSLV--------DPETHFDHFNIR 52 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GI + ++ P+F+ ++ + N + +AHNA FD+ + L + + Sbjct: 53 LTGIDPKKVQGAPNFAQLWQKIEPIMN--SGILVAHNAVFDMSVLKKCLSAYGIEWKSTA 110 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + + T+ R+ P + LN +C YGI++ H H A DS +++ ++ + G+ + Sbjct: 111 KYLCTVQAGRKLLPGRGHKLNEMCDYYGISLDH---HQADSDSRACAEILLRYIESGADV 167 Query: 182 N 182 N Sbjct: 168 N 168 >gi|119472859|ref|ZP_01614766.1| ribonuclease T [Alteromonadales bacterium TW-7] gi|119444691|gb|EAW25998.1| ribonuclease T [Alteromonadales bacterium TW-7] Length = 227 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 26/212 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G + + D ++EI AV +L ++T + P G A++ + Sbjct: 19 VVIDVETAGFNKETDALLEI-AVSVLKMDDDGLLSIDQTVHFHVEPFEGANIEQAAIEFN 77 Query: 64 GITDEF--LKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR-- 112 GI D F L+ + E + Q + +AHNA FD GF+NA ++R Sbjct: 78 GI-DPFSPLRGAVAEEEAIKEICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERNN 136 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P P DT ++A + L C+ GI + H AL D+ +++Y Sbjct: 137 IKRTPFHPFVSFDTTTLAGLA--LGQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYC 194 Query: 173 KMM-----VGGSQINFGFKTNEDRFFKEEKKT 199 ++ +GG + ++ +D KE K T Sbjct: 195 LIVNRWQELGGWPLAPLDESGDDEAAKEPKTT 226 >gi|152995559|ref|YP_001340394.1| ribonuclease T [Marinomonas sp. MWYL1] gi|150836483|gb|ABR70459.1| ribonuclease T [Marinomonas sp. MWYL1] Length = 222 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + K D ++E+ A L +D + + T + P G AL G Sbjct: 16 VVIDVETAGFNQKTDALLEMAASILRMDENGDLYIHETLDFLIKPFEGANLEKAALDFTG 75 Query: 65 ITDEFL---KDKPSFSSIFSEFWDFFNE------QNAEWIAHNAKFDVGFINAELQR--I 113 I D F +D P ++ F E + A + HNA FD GF+NA ++R I Sbjct: 76 I-DPFAPGRQDMPETEALNQMFSKVRKELKSVGCKRAILVGHNAAFDHGFLNAAIERADI 134 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT S+A + L C+ I S+ H A D+ ++++ + Sbjct: 135 KRNPFHPFSSFDTASLAGLVF--GQTVLAKACEAASIPFSNSEAHSAKYDTEKTAELFCE 192 Query: 174 MM 175 M+ Sbjct: 193 MV 194 >gi|46446795|ref|YP_008160.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia amoebophila UWE25] gi|46400436|emb|CAF23885.1| putative DNA polymerase III, epsilon chain, mutD [Candidatus Protochlamydia amoebophila UWE25] Length = 216 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 10/152 (6%) Query: 26 IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85 +IEI A + + NR F+ F+ P G PE+ +H ITDE + + SF+ + +EF + Sbjct: 1 MIEIAAYDPVQ----NRRFEKFVHP-GFPIPPESTAIHHITDEMVANAGSFADVGAEFVE 55 Query: 86 FFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARR-KHPSSRNDLNS 143 F + IAHN FD+ F+ E +R + +D+L ARR + R+ L Sbjct: 56 FCAGE-VVLIAHNNDNFDLHFLRHEFERNQLILPTHWKFLDSLKWARRYRSDLPRHTLQF 114 Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L + YGIT + + H AL D +L V+ M+ Sbjct: 115 LREIYGITAN--NAHRALDDVIVLERVFRSMV 144 >gi|332638894|ref|ZP_08417757.1| helicase [Weissella cibaria KACC 11862] Length = 940 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 5/127 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETT S+ RII+I AV + K F + P G + ++L GIT + Sbjct: 9 VVDLETTRTTSETGRIIQI-AVAFVQNKKIINQFSTLVNP-GEQIPRNIIQLTGITQNMV 66 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K P F + Q ++AHN FD+ F+NAE +R+ L S +DT+ ++ Sbjct: 67 KGAPFFEDVAMTLHAML--QGTIFVAHNVNFDLPFLNAEFERVGLTALK-STALDTVPLS 123 Query: 131 RRKHPSS 137 + P++ Sbjct: 124 QILWPTA 130 >gi|256832848|ref|YP_003161575.1| DNA polymerase III, epsilon subunit [Jonesia denitrificans DSM 20603] gi|256686379|gb|ACV09272.1| DNA polymerase III, epsilon subunit [Jonesia denitrificans DSM 20603] Length = 298 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 5/141 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL S+NDR+IE+ V + ++ + P + + A +H I + Sbjct: 6 VIDVETTGLSSRNDRVIELAVVHTDTHGTITGHWETLINP---QRNLTAQHIHHIHASHI 62 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F+ I ++ + + +AHNA FD F+ AEL R K + T++++ Sbjct: 63 QHAPLFADIATDLLTLLDGRVP--VAHNAPFDARFLAAELHRTGKTLHQQHDFLCTMNLS 120 Query: 131 RRKHPSSRNDLNSLCKRYGIT 151 RR P L IT Sbjct: 121 RRYLPGVGKPLADCLAATNIT 141 >gi|119775228|ref|YP_927968.1| ribonuclease T [Shewanella amazonensis SB2B] gi|119767728|gb|ABM00299.1| RNAse T [Shewanella amazonensis SB2B] Length = 258 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI AV LL ++T + P G P AL + Sbjct: 40 VVIDVETAGFNAQTDALLEI-AVTLLTMDDNGMLALDKTLHFHIEPFEGANLEPAALAFN 98 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--I 113 GI + +K + IF + A +AHNA FD GF+ + R + Sbjct: 99 GIDPSNPLRGAVSEKEAMLEIFKAVRKGMKAADCHRAVIVAHNAAFDHGFVTKAIDRSGV 158 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++ L CK GI ++ H AL D+ ++++ Sbjct: 159 KRSPFHPFATFDTACLSGLA--LGHTVLAQACKIAGIPFDNKEAHSALYDTERTAELFCY 216 Query: 174 MM 175 ++ Sbjct: 217 IV 218 >gi|145299434|ref|YP_001142275.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449] gi|142852206|gb|ABO90527.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449] Length = 223 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A L +D + ++ F + P G AL+ G Sbjct: 18 VVIDVETAGFNARTDALLEIAAYTLKMDEDGWLAPDQVFHFHVEPFEGANLEKAALEFTG 77 Query: 65 ITDEF------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--I 113 I D F + +K + + IF E + A +AHNA FD GF+ A +R + Sbjct: 78 I-DPFNPLRGAVSEKEALTEIFKGIRKGMKESDCNRAIIVAHNATFDHGFVMAAAERAGL 136 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C+ I ++ H AL D+ ++++ Sbjct: 137 KRNPFHPFATFDTAALSGLA--LGQTVLAKACQSARIPFDNKEAHSALYDTERTTELFCH 194 Query: 174 MM 175 ++ Sbjct: 195 IV 196 >gi|327405996|ref|YP_004346834.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823] gi|327321504|gb|AEA45996.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM 16823] Length = 458 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 11/166 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65 M + DIETTG +K+ +I EI A+ D K +F + P PE + +L GI Sbjct: 1 MNYAIVDIETTGGSTKSSKITEI-AIYKHDGMKIIDSFDTLVNP--EMPIPEFISRLTGI 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+ +++ P F I + +F ++ ++AHN FD G I E + + D + Sbjct: 58 HDDMVENAPKFYEIAKQIIEF--TEDCIFVAHNVGFDYGIIRHEFKLLGYDYRKAH--LC 113 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLLS 168 T+ +R P + L L K GI + HR+K A +HL + Sbjct: 114 TVRASRYVIPDHESYSLGKLTKALGIQLIGRHRAKGDAEATAHLFT 159 >gi|255542840|ref|XP_002512483.1| exonuclease, putative [Ricinus communis] gi|223548444|gb|EEF49935.1| exonuclease, putative [Ricinus communis] Length = 334 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 18/174 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTG + +RIIEI +L + N TFQ + P + P + +HGIT Sbjct: 135 IVFDLETTGFSREYERIIEIALQDL--HGGENSTFQTLINPG--RIVPNS-HIHGITTHM 189 Query: 70 LKDK--PSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121 + P + + + +AHN + FDV F+ E +R D Sbjct: 190 VCKPHVPRMEDLIPILLQYIRSRQKPGGYVLLVAHNGRSFDVPFLINEFKRSGVDVPCNW 249 Query: 122 RIIDTLSIARRKHPSS----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +DTL +AR+ S + L L + +GI + S H A+ D LL+ ++ Sbjct: 250 LFMDTLPLARKWMKSKGLKISSSLQGLREAFGIKLEG-SAHRAMSDVRLLAKLF 302 >gi|90417008|ref|ZP_01224937.1| ribonuclease T [marine gamma proteobacterium HTCC2207] gi|90331355|gb|EAS46599.1| ribonuclease T [marine gamma proteobacterium HTCC2207] Length = 221 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 23/184 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----GRKNSPEALKLHG 64 +V D+ET G +S+ D ++EI AV L ++ N + N G AL+ G Sbjct: 29 VVVDVETGGFNSRTDAMLEIAAVILEMDAQGNIQIKETHSKNIDPFPGAVVEKAALEFTG 88 Query: 65 I-----------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR- 112 I E L+D F I E ++ +AHNA FD+GF+NA + R Sbjct: 89 IDIYDPERMPEEEGEALRDI--FRPIRHEISATGCTRSV-MVAHNAHFDLGFVNAAVNRN 145 Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I ++P P DT ++A + + L C+ + +RS H AL D+ ++++ Sbjct: 146 QIKRNPFHPFSCFDTSTLAGLAY--GQTVLAKACQAAKMDFDNRSAHSALYDAVKTAELF 203 Query: 172 IKMM 175 ++ Sbjct: 204 CGIV 207 >gi|292488168|ref|YP_003531050.1| ribonuclease T [Erwinia amylovora CFBP1430] gi|291553597|emb|CBA20642.1| ribonuclease T [Erwinia amylovora CFBP1430] Length = 226 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+K + ++EI AV L +D + + + T + P G EAL +G Sbjct: 22 VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLAEALAFNG 81 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD+ F+NA +R + Sbjct: 82 IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 141 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C G++ H AL D+ +D++ ++ Sbjct: 142 RNPFHPFVTFDTAALSGLVL--GQTVLAKACNAAGMSFDSAQAHSALYDTLQTADLFCEL 199 Query: 175 M 175 + Sbjct: 200 V 200 >gi|302533422|ref|ZP_07285764.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] gi|302442317|gb|EFL14133.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] Length = 241 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 79/186 (42%), Gaps = 23/186 (12%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M R + FD ETTG+D + DRI+ V R+ + + P G P A Sbjct: 1 MTRWYEGPLAAFDTETTGVDVEQDRIVSAALVVQECAGGRVRSTRWLVNP-GVPVPPGAT 59 Query: 61 KLHGITDEFLKDKPSF-SSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQR---- 112 ++HG+TDE L+ + + + E EQ + NA FD+ ++ EL+R Sbjct: 60 EVHGLTDEHLQRNGRWPAPVVEEIARALGEQRMAGRPVVVMNAPFDLTLLDRELRRHRAS 119 Query: 113 -----INKDP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 ++ P LDP R++D RK R L LC YGI + H A D+ Sbjct: 120 TLARYLDNRPLTVLDP-RVLDKHLDRYRK---GRRTLTDLCAHYGIELE--GAHDASADA 173 Query: 165 HLLSDV 170 +V Sbjct: 174 QAALEV 179 >gi|182435215|ref|YP_001822934.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775853|ref|ZP_08235118.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf. griseus XylebKG-1] gi|178463731|dbj|BAG18251.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656186|gb|EGE41032.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf. griseus XylebKG-1] Length = 236 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 13/155 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDE 68 + FD+ETTG D +NDRI+ V LD T + +L G +A +HGI TD Sbjct: 9 VGFDLETTGTDVENDRIVTAALVR-LDADGTVAEQRTWLLDPGVAIPEQASAIHGIGTDH 67 Query: 69 FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD------ 119 + E E + NA++D+ ++ E +R +D Sbjct: 68 ARRHGARAVVAVEEIAHAVAEVLRSGVPLVVMNARYDLSLLDRECRRHGLPSVDERVGGE 127 Query: 120 PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 PS +ID L I + K+ + L +LC YG+ + Sbjct: 128 PSPVIDPLVIDKHVDKYRKGKRALQALCDHYGVAL 162 >gi|91785922|ref|YP_546874.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666] gi|91695147|gb|ABE41976.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666] Length = 203 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 11/163 (6%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D ETTGL + DR E+ A+ L++ + FQ + N P + L GIT+ Sbjct: 6 VIDFETTGLSPAMGDRATEV-AIVLVEGGRVVDRFQSLM--NAGVRIPAFITSLTGITNA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P +++ ++ F NA +AHNA FD F AEL R + P T+ Sbjct: 63 MVASAPDAATVMTDANRFVG--NAPLVAHNASFDRKFWEAELSRAGERASQP--FACTML 118 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++RR +P + + L L + + + R+ H AL D+ + + + Sbjct: 119 VSRRLYPQAPSHKLGVLVDYHHLPKAGRA-HRALADAEMAASL 160 >gi|72161431|ref|YP_289088.1| hypothetical protein Tfu_1027 [Thermobifida fusca YX] gi|71915163|gb|AAZ55065.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX] Length = 590 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 11/164 (6%) Query: 18 GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77 G +IE+GAV L D + F + P+ + L L GIT ++ PS + Sbjct: 57 GTHPATAALIEVGAVRLRDGQVLDE-FTTLVNPHAPVPASITL-LTGITTAMVESAPSPA 114 Query: 78 SIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS 136 + S F DF +AHNA FDV F+ A R + P ++DTL +ARR P Sbjct: 115 AALSAFLDFAGFRPGTVLVAHNAPFDVRFLKAACAR-HGIPWPSPAVLDTLQLARRLVPR 173 Query: 137 S--RND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 RN L++L + +G +H H AL D+ +DV ++ +VG Sbjct: 174 GEVRNHRLDTLARVFG---AHPPAHRALDDARATADV-LRGLVG 213 >gi|297195480|ref|ZP_06912878.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis ATCC 25486] gi|297152819|gb|EFH32011.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis ATCC 25486] Length = 241 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 21/157 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ AV + D +L G P A+++HG+TD+ L Sbjct: 11 AFDTETTGVDVEEDRIVS-AAVVVQDSPGGRPRITRWLVNPGVPVPPGAIEVHGLTDDHL 69 Query: 71 KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR---------INKDP 117 + + + + E EQ A + NA FD+ ++ EL+R +++ P Sbjct: 70 QRNGRWPAPVMEEIARSLAEQCAAGRPLVVMNAPFDLTLLDRELRRHRASSLSRYLDRSP 129 Query: 118 ---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT 151 LDP R++D RK R L LC +Y + Sbjct: 130 LCVLDP-RVLDKHLDRYRK---GRRTLTDLCAQYEVV 162 >gi|237732820|ref|ZP_04563301.1| DNA polymerase III subunit epsilon [Mollicutes bacterium D7] gi|229384061|gb|EEO34152.1| DNA polymerase III subunit epsilon [Coprobacillus sp. D7] Length = 224 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 16/187 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKN---SPEALKLHGI 65 +VFD+ETTG + K DRIIEIGA+++ + +R F P G K S + ++ GI Sbjct: 42 VVFDLETTGFNKKEDRIIEIGAIKVKNGRVVDR-FSTLCAPIKGGKPMYISAKITEVTGI 100 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRII 124 + L ++ S F + E +AHN KFD+ F+ +R N + + I+ Sbjct: 101 KNVDLLNQIPESEAVKNFMCWLGESKIS-VAHNGLKFDIPFLKEACKRSNVE-FKFTHIL 158 Query: 125 DTLSIARRKHPSSRNDL-----NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 DT+ +++ + + ++ +L + +G+ H A+ D L ++ K+ Sbjct: 159 DTMLLSKALNYVNNGNIPNNKQETLARYFGV---DYQAHRAVNDCEALLKIFDKLKNDAK 215 Query: 180 QINFGFK 186 INF K Sbjct: 216 NINFSLK 222 >gi|229058278|ref|ZP_04196665.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH603] gi|228720049|gb|EEL71635.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH603] Length = 934 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPLFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DEDLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|323489712|ref|ZP_08094939.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2] gi|323396843|gb|EGA89662.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2] Length = 920 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N + +V DIETTG +K DRII++ V + + T+ T+ F+ P GR L Sbjct: 2 NTQKYVVVDIETTGHSPAKGDRIIQLAMVTIENGEITD-TYTEFINP-GRTIPLFIQDLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 ITD + + +F ++ Q+A ++AHN FD+ F+ AEL+R + P Sbjct: 60 NITDADVAEAKAFEHYAQTVYE--KMQDAIFVAHNTNFDLPFLQAELKR-SGLPKWQGLT 116 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 +DT+ + R +P++ + L + GI + +HR+ A+ + L Sbjct: 117 MDTVELVRLMYPTAFSFKLQDITSELGIPLESAHRADDDAMATALLF 163 >gi|257439307|ref|ZP_05615062.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] gi|257198182|gb|EEU96466.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] Length = 244 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 76/140 (54%), Gaps = 17/140 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-------TFQVFL-CPNGRKNSPEALK 61 + FD ETTGL++++ +IIE+ A+ + KT R + VF+ P G + + ++ Sbjct: 15 VFFDTETTGLEAESCQIIELAAIRV---EKTERGTLRMADSADVFVKLPEGERIPQKIVE 71 Query: 62 LHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDP-- 117 L GITDE L+++ + + + F + + +AHNA+FD+ F L+R N P Sbjct: 72 LTGITDEQLENEGITEAEAAARFTELISGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPEA 131 Query: 118 LDPSRIIDTLSIA--RRKHP 135 L + +D+L++ RR +P Sbjct: 132 LKAADYLDSLTVYKDRRAYP 151 >gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis] gi|1090178|prf||2018296A DNA polymerase III Length = 1435 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 6/167 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+DIETTGL + +I+ GA ++ + T F+ P + +S KL GIT E Sbjct: 405 VVYDIETTGLSPMLNELIQFGA-SVIKNGRIIETHHFFIKPKSKLDSFTT-KLTGITQEH 462 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ + F + +AHNA FD F+ + N + IDTL++ Sbjct: 463 LEKGYELQEALEKISSIFKARIM--VAHNAAFDHNFLKQKFID-NNIEFEEMISIDTLNL 519 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ +P R+ L + + + H A DS +L++++I M Sbjct: 520 AKVLNPIYRSYRLGEVASKLSVVYDPSIAHRADYDSSVLTNIFILQM 566 >gi|291300433|ref|YP_003511711.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia nassauensis DSM 44728] gi|290569653|gb|ADD42618.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia nassauensis DSM 44728] Length = 410 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 12/173 (6%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD ETTG+ + RIIEI V D T+ L P+ R P+ +HGI Sbjct: 4 VFDTETTGIIPGMHHRIIEIAVVLADDEGSIENTWSTLLNPD-RDLGPQ--HIHGIKARQ 60 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128 + D P F I + + + +AHN FD+ F++AE +R+ + + T++ Sbjct: 61 VIDAPKFGDIAGQLIQMLSGRTL--VAHNLPFDLRFLSAEFERLGHQLTYNHHLGVCTMN 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGG 178 + + L CK G+ ++ H AL D+ + + YI GG Sbjct: 119 WSTTFLEGASRSLPECCKAAGVQLT--GWHSALSDAEATAALLKHYINAARGG 169 >gi|71281998|ref|YP_270147.1| ribonuclease T [Colwellia psychrerythraea 34H] gi|71147738|gb|AAZ28211.1| ribonuclease T [Colwellia psychrerythraea 34H] Length = 231 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 26/186 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCP-NGRKNSPEALKL 62 +V D+ET G +S+ D ++E+ A L D+S + T Q + P G P+AL+ Sbjct: 34 VVIDVETAGFNSQTDALLELAASVLHLDEDTGDFS-IDETIQFNIEPFEGANLEPKALEF 92 Query: 63 HGI-----------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 GI DE LKD + + Q A +AHNA FD+GF+NA + Sbjct: 93 TGIDPTNPLRGAVDEDEALKD---LFKLVRKKMKVAGCQRAIIVAHNAAFDLGFLNAATE 149 Query: 112 R--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 R I + P DT ++A + L C I ++ H AL D+ ++ Sbjct: 150 RCKIKRSPFHSFVSFDTTTLAGLAL--GQTVLAKACIAAKIDFNNSEAHSALYDTEKTAE 207 Query: 170 VYIKMM 175 ++ ++ Sbjct: 208 LFCHIV 213 >gi|309803980|ref|ZP_07698062.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners LactinV 11V1-d] gi|308163899|gb|EFO66164.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners LactinV 11V1-d] Length = 933 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 8/128 (6%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K +DRII+ G + D K +T+ + P K P A++ L GI+++ Sbjct: 13 VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +FS + + +N ++AHN FD+ F+N EL P D + IDT+ Sbjct: 70 EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFD-GKAIDTVE 126 Query: 129 IARRKHPS 136 +A+ P+ Sbjct: 127 LAQIAFPT 134 >gi|302184787|ref|ZP_07261460.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae 642] Length = 203 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 3 RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF + +AHNA FD F + EL RI + Sbjct: 60 SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRT--REQSFAC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +L +ARR P + N RY H A+ D+ + +++ + + Sbjct: 116 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTVHL 164 >gi|34557013|ref|NP_906828.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM 1740] gi|34482728|emb|CAE09728.1| DNA POLYMERASE III, EPSILON SUBUNIT, PUTATIVE [Wolinella succinogenes] Length = 203 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 9/170 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ETTGLD K D II + AV++ D T+ Q+F+ P G N +++K+H I Sbjct: 32 VAFDCETTGLDPKKDEIISLAAVKIRDNKILTSEKLQLFVKPKGEINI-DSIKIHHIRAC 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + F DF N + + +FDV IN + + L P ++I+ + Sbjct: 91 DVSNGITSEEAALRFLDFLG--NRPLVGYYLEFDVALINRIIHPLLGITL-PQKMIEVSA 147 Query: 129 IARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I K P DL + + ++H AL D+ + +Y+K+ Sbjct: 148 IYYDKKIGLIPEGHVDLRLRSILRDLKLPELTQHDALGDAITSALIYLKL 197 >gi|124002035|ref|ZP_01686889.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134] gi|123992501|gb|EAY31846.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134] Length = 463 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTGL +D+I EI A+ D +F + P S ++ GIT++ + Sbjct: 4 IIDVETTGLRPTDDKITEI-AIYKHDGESVVDSFHSLVNPECYI-SDRITQITGITNDMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F I + + ++AHNA FD GF+ E + + + + T+ ++ Sbjct: 62 ANAPKFYEIAKDILAI--TEGTVFVAHNAHFDYGFVREEFKALGYK--FTRKTLCTVRVS 117 Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R+ P L LCK + I +++ H A D+ +V+ K++ Sbjct: 118 RKVFPGLPSYSLAKLCKHFKIQLTNH--HRASADALATVEVFEKLL 161 >gi|323163498|gb|EFZ49324.1| ribonuclease T [Escherichia coli E128010] Length = 215 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQRIN 114 I D D+ + S + + F A +AHNA FD F+ A +R++ Sbjct: 80 I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERVS 137 Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++P P DT ++A + L+ C+ G+ H AL D+ + ++ Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195 Query: 173 KMM 175 +++ Sbjct: 196 EIV 198 >gi|292899378|ref|YP_003538747.1| ribonuclease T [Erwinia amylovora ATCC 49946] gi|291199226|emb|CBJ46341.1| ribonuclease T [Erwinia amylovora ATCC 49946] Length = 224 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+K + ++EI AV L +D + + + T + P G EAL +G Sbjct: 20 VVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLAEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD+ F+NA +R + Sbjct: 80 IDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C G++ H AL D+ +D++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLVL--GQTVLAKACNAAGMSFDSAQAHSALYDTLQTADLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP] gi|14424449|sp|P47729|DPO3_MYCPU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma pulmonis] Length = 1435 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 6/167 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+DIETTGL + +I+ GA ++ + T F+ P + +S KL GIT E Sbjct: 405 VVYDIETTGLSPMLNELIQFGA-SVIKNGRIIETHHFFIKPKSKLDSFTT-KLTGITQEH 462 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ + F + +AHNA FD F+ + N + IDTL++ Sbjct: 463 LEKGYELQEALEKISSIFKARIM--VAHNAAFDHNFLKQKFID-NNIEFEEMISIDTLNL 519 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ +P R+ L + + + H A DS +L++++I M Sbjct: 520 AKVLNPIYRSYRLGEVASKLSVVYDPSIAHRADYDSSVLTNIFILQM 566 >gi|146308744|ref|YP_001189209.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] gi|145576945|gb|ABP86477.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] Length = 199 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 6/164 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTG+ R EIG + D +R +Q + +G P +L GI++ L Sbjct: 6 VIDFETTGVSPSQARATEIGVAIIEDGRIVDR-YQSLMN-SGAWVPPFIEQLTGISNAML 63 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P + +E DF E+ +AHNA FD F +AEL R+ + P LS Sbjct: 64 RKAPPSEQVMNEVADFIGER--PLLAHNASFDQKFWDAELARVRRRRSQPFACSLLLSRR 121 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S + L +L G+ + R+ H AL D+ + +++ + + Sbjct: 122 LLPEAPS-HKLGNLNAWAGLPDTGRA-HRALADAEMAANLTLHL 163 >gi|262375958|ref|ZP_06069189.1| ribonuclease T [Acinetobacter lwoffii SH145] gi|262309052|gb|EEY90184.1| ribonuclease T [Acinetobacter lwoffii SH145] Length = 219 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 24/186 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ET G +++ D ++EI A+ ++ Y++ + F + N E L + EF Sbjct: 23 VVVDVETAGFNAQTDALLEIAAIPIV-YNEEGQ-FVPGQAYHAHINPFEGANLDRRSLEF 80 Query: 70 LKDKPS--------------FSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR 112 + PS IF + +QN A + HNA FD+GF+ A + R Sbjct: 81 IGIDPSNPMRIAMAEDEKTALKRIFKSVNEVRRQQNCTHAVLVGHNAHFDLGFLQAAIAR 140 Query: 113 I---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 N++P + DT++++ + L C + GI + H AL D+ ++ Sbjct: 141 TGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLAKSCIQAGIEFDGKEAHSALYDTQKTAE 198 Query: 170 VYIKMM 175 ++ ++ Sbjct: 199 LFCYIL 204 >gi|183985197|ref|YP_001853488.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M] gi|183178523|gb|ACC43633.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M] Length = 329 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G + R+I + A+ L + L P P +HG+T L Sbjct: 18 VVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPG---VDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINKDPLDPSRIIDTLSI 129 +D+P F+ I + + + +AHN FD F + P+D ++ T+ + Sbjct: 75 EDQPQFADIVGDLTELLRGRTL--VAHNVAFDYSFLAAEAELADAELPVD--SVMCTVEL 130 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L +G+T H A D+ +LS + + Sbjct: 131 ARRLELGIDNLRLETLAAHWGVT--QERPHDAFDDALVLSGILAPAL 175 >gi|320539160|ref|ZP_08038831.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson] gi|320030798|gb|EFW12806.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson] Length = 248 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 22/195 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L +D + + + T + P G PEAL +G Sbjct: 52 VVIDVETAGFNAKTDALLEIAAVTLKMDEGGWLQQDETLHFHVEPFEGANLQPEALAFNG 111 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD F+ A +R + Sbjct: 112 IDPHNPLRGAVSEYDALHAIFKTVRAGIKHRGCNRAIIVAHNANFDHSFLMAAAERASLK 171 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C G+ H AL D+ + ++ ++ Sbjct: 172 RNPFHPFATFDTAALSGLV--LGQTVLAKACTAAGMPFDSSQAHSALYDTEQTALLFCEL 229 Query: 175 M-----VGGSQINFG 184 + +GG + G Sbjct: 230 VNRWKRLGGWPLTLG 244 >gi|315638420|ref|ZP_07893597.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis JV21] gi|315481411|gb|EFU72038.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis JV21] Length = 260 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 13/172 (7%) Query: 3 RKNKMRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 R NK+++ VF DIE+TG + +I+EIGAV++ ++ + +R F+ F+ + Sbjct: 63 RTNKIKEQVFCIVDIESTG-GINSGQILEIGAVKIQNHKELDR-FESFV--KVDEIPLNI 118 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L GI +KD P+ + + F F N ++ ++AHN KFD FI+ L L Sbjct: 119 TELTGIELNMVKDAPNLTRVLEAFRLFLN--DSVFVAHNVKFDYNFISKSLYECGFGIL- 175 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R I T+ A+ SS L++L + I +H H AL D+ ++++ Sbjct: 176 LNRKICTIDFAQCCIESSHYKLDALKEILKIESTH---HRALNDALAAAEIF 224 >gi|262165240|ref|ZP_06032977.1| ribonuclease T [Vibrio mimicus VM223] gi|262024956|gb|EEY43624.1| ribonuclease T [Vibrio mimicus VM223] Length = 224 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L N T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGNLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ + E + EQ A +AHNA FD F+ A +R + Sbjct: 80 IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|167462368|ref|ZP_02327457.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae subsp. larvae BRL-230010] Length = 203 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 21/174 (12%) Query: 7 MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63 MR+I VFD+ETTGLD D+I EI A+ D + + + N G K +PE + L Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEIAAIR-TDLIREYGRLDIRITKNSGTKLTPEIVNLT 59 Query: 64 GITDEFLKD---KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 GI++ ++ +P + S F +AH+A FD+ F+ A Q +P Sbjct: 60 GISESMMRGGVPEPVAIMLLSCFM-----SGTIVVAHHAPFDLAFL-ARYQ------FEP 107 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + T ++++ L S+ +R GI ++ H A+ D V+ +M Sbjct: 108 DSFVCTRALSKLVESDESASLASVAERRGIELT--GHHRAMNDVEATVKVFQQM 159 >gi|229166488|ref|ZP_04294244.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH621] gi|228617062|gb|EEK74131.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH621] Length = 934 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPLFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DEDLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|260587155|ref|ZP_05853068.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] gi|260542350|gb|EEX22919.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] Length = 244 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 17/140 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-------TFQVFL-CPNGRKNSPEALK 61 + FD ETTGL++++ +IIE+ A+ + KT R + VF+ P G + + ++ Sbjct: 15 VFFDTETTGLEAESCQIIELAAIRV---EKTERGTLRMADSADVFVKLPEGERIPQKIVE 71 Query: 62 LHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDP-- 117 L GITDE L+++ + + + F + +AHNA+FD+ F L+R N P Sbjct: 72 LTGITDEQLENEGITEAEAAARFTELIGGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPEA 131 Query: 118 LDPSRIIDTLSIA--RRKHP 135 L + +D+L++ RR +P Sbjct: 132 LKAADYLDSLTVYKDRRAYP 151 >gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] Length = 331 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 12/187 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRI+ + + + + P + P + +HG+T E L Sbjct: 21 VVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNP---ERDPGPVWIHGLTSEVL 76 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129 + P F I E + + +AHNA FD + E R P+ R + T+++ Sbjct: 77 EGAPLFPEIAGELSRRLDGRVL--VAHNAVFDWSMLAREYARAGITAPV--RRRLCTIAL 132 Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A+ P + L +L +G + R H AL D+ +L++ + + + N Sbjct: 133 AKELALPLPNHKLETLAAHFG--VEQRRAHHALDDARVLAEAFRPSLRAAALGNVRLPLL 190 Query: 189 EDRFFKE 195 E R E Sbjct: 191 ECRPLTE 197 >gi|262041960|ref|ZP_06015142.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040658|gb|EEW41747.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 219 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 29/168 (17%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D TN L R SP+A+ +H IT+E + Sbjct: 4 VIDTETCGLQGG---IVEIASVDIVDGQITNPMSH--LVRPDRPISPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP I + + W +AHNA FD + P I T+ + Sbjct: 59 ADKPWIEEIIPHY------HGSRWYVAHNASFDRRVL----------PEMHGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDV 170 ARR P + L K + ++ HR+ + + + LL D+ Sbjct: 103 ARRLWPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLLDI 150 >gi|47566006|ref|ZP_00237044.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cereus G9241] gi|47556923|gb|EAL15253.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cereus G9241] Length = 934 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ + + P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELGQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|16760829|ref|NP_456446.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765220|ref|NP_460835.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141480|ref|NP_804822.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62180453|ref|YP_216870.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167993853|ref|ZP_02574946.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233692|ref|ZP_02658750.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168259853|ref|ZP_02681826.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168820696|ref|ZP_02832696.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469318|ref|ZP_03075302.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197265660|ref|ZP_03165734.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200390618|ref|ZP_03217229.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213419003|ref|ZP_03352069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426806|ref|ZP_03359556.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648159|ref|ZP_03378212.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213851907|ref|ZP_03381439.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583619|ref|YP_002637417.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912063|ref|ZP_04655900.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829019|ref|ZP_06546715.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25511843|pir||AB0741 exodeoxyribonuclease X (EC 3.1.11.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420413|gb|AAL20794.1| DNA exonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503126|emb|CAD05629.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi] gi|29137107|gb|AAO68671.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128086|gb|AAX65789.1| DNA exonuclease X, degrades ss and ds DNA with 3'-5' polarity [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194455682|gb|EDX44521.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197243915|gb|EDY26535.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199603063|gb|EDZ01609.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205328180|gb|EDZ14944.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332278|gb|EDZ19042.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205342565|gb|EDZ29329.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205351180|gb|EDZ37811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224468146|gb|ACN45976.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247049|emb|CBG24868.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993856|gb|ACY88741.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158399|emb|CBW17906.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912871|dbj|BAJ36845.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085616|emb|CBY95394.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224521|gb|EFX49584.1| Exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322714928|gb|EFZ06499.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130162|gb|ADX17592.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988772|gb|AEF07755.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 +RR P + +L K +++ H AL D ++ + + I +M Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|283798273|ref|ZP_06347426.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] gi|291074053|gb|EFE11417.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] Length = 244 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 17/140 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-------TFQVFL-CPNGRKNSPEALK 61 + FD ETTGL++++ +IIE+ A+ + KT R + VF+ P G + + ++ Sbjct: 15 VFFDTETTGLEAESCQIIELAAIRV---EKTERGTLRMADSADVFVKLPEGERIPQKIVE 71 Query: 62 LHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDP-- 117 L GITDE L+++ + + + F + +AHNA+FD+ F L+R N P Sbjct: 72 LTGITDEQLENEGITETEAAARFTELIGGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPEV 131 Query: 118 LDPSRIIDTLSIA--RRKHP 135 L + +D+L++ RR +P Sbjct: 132 LKAADYLDSLTVYKDRRAYP 151 >gi|260592337|ref|ZP_05857795.1| exonuclease [Prevotella veroralis F0319] gi|260535724|gb|EEX18341.1| exonuclease [Prevotella veroralis F0319] Length = 283 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGLD DRII+I +++ K R F+ P G+ +L GI+DE Sbjct: 10 IVFDLETTGLDLVADRIIQISYIKVYADGKEERE-NFFINP-GKHIPTIVTELTGISDED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127 + D P+F E D F ++ N+ +FDV + E R D R+ID Sbjct: 68 VADAPTFKQKAKELADKF--AGCDFAGFNSNRFDVPMLAEEFLRAGIDFDFSKCRLIDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 +I H R +L + K Y Sbjct: 126 NIY---HKMERRNLAAAYKFY 143 >gi|161613571|ref|YP_001587536.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|198244129|ref|YP_002215209.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|161362935|gb|ABX66703.1| hypothetical protein SPAB_01291 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197938645|gb|ACH75978.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622957|gb|EGE29302.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSK---HGALLDSHLLSDVYIKMM 175 +RR P + +L K +++ H AL D ++ + + I +M Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHYHRALYDCYITAALLIDIM 151 >gi|307823995|ref|ZP_07654222.1| ribonuclease T [Methylobacter tundripaludum SV96] gi|307734779|gb|EFO05629.1| ribonuclease T [Methylobacter tundripaludum SV96] Length = 207 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--EL---LDYSKTNR-TFQVFLCPNGRKNSPEALKLH 63 +V DIET G + K + ++EI AV EL D T R T V N + ALK + Sbjct: 18 VVVDIETAGFNPKKNALLEIAAVIVELNSNSDLEITERYTTHVIPFKNAELDE-AALKFN 76 Query: 64 GITDEF-----LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--I 113 GI +++K + +F + N A + HN FD+GF+NA +QR I Sbjct: 77 GIDPHHPFRMAIEEKDALHMLFKPIKEAVKRNNCTRAILVGHNPAFDIGFLNAAIQRTQI 136 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++ + + L + + G+ + H AL D+ ++++ Sbjct: 137 KRSPFHPFSTFDTATLGGLVY--QQTVLAKIAQTAGLDWDNEKAHSALYDAEKTAELFCM 194 Query: 174 MM 175 ++ Sbjct: 195 IV 196 >gi|269139030|ref|YP_003295731.1| ribonuclease T [Edwardsiella tarda EIB202] gi|267984691|gb|ACY84520.1| ribonuclease T [Edwardsiella tarda EIB202] gi|304558963|gb|ADM41627.1| Ribonuclease T [Edwardsiella tarda FL6-60] Length = 254 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+ + ++EI AV L + +T++ + P G SPEAL +G Sbjct: 53 VVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHITPFEGAVLSPEALAFNG 112 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF +Q A +AHNA FD F+ A +R + Sbjct: 113 IDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMAAAERAGLK 172 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C I H AL D+ + ++ ++ Sbjct: 173 RNPFHPFATFDTAALSGLV--LGQTVLAKACLSAEIPFDSAQAHSALYDTQQTATLFCEL 230 Query: 175 M 175 + Sbjct: 231 V 231 >gi|332534627|ref|ZP_08410459.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505] gi|332035907|gb|EGI72388.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505] Length = 234 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 23/184 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI A L +D + T + P G A+ +G Sbjct: 19 VVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIDFNG 78 Query: 65 I-----------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR- 112 I DE +K+ + + Q + +AHNA FD GF+NA ++R Sbjct: 79 IDPFSPLRGAVPEDEVIKE---ICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERN 135 Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I + P P DT S+A + L C+ GI + H AL D+ +++Y Sbjct: 136 NIKRTPFHPFVSFDTTSLAGLA--LGQTVLAKACRAAGIEFDNSQAHSALYDTERTAELY 193 Query: 172 IKMM 175 ++ Sbjct: 194 CLIV 197 >gi|167753685|ref|ZP_02425812.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216] gi|167658310|gb|EDS02440.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216] Length = 257 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 7/109 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTG+D DRI+EI V+++ D + RT ++ G EA +HGITDE Sbjct: 10 IFFDLETTGIDIARDRIVEISMVKVMPDGEEIVRTRRI---NPGMPIPAEATAIHGITDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 +KD P F I F + ++ N+ +FD+ + E R D Sbjct: 67 DVKDCPLFPQIAKSLAQFI--EGCDFGGFNSNRFDLPMLVEEFMRAGVD 113 >gi|167552492|ref|ZP_02346245.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|197251607|ref|YP_002146145.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215310|gb|ACH52707.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205322894|gb|EDZ10733.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 +RR P + +L K +++ H AL D ++ + + I +M Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|311694106|gb|ADP96979.1| ribonuclease T [marine bacterium HP15] Length = 208 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++E+ AV L + + T + P G AL G Sbjct: 11 VVVDVETAGFNPERDALLEVAAVILTMDDDGWVRRAETHVQQIDPFEGANLEQSALDFTG 70 Query: 65 ITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I E + ++ S IFS + A + HNA FD FI A R I Sbjct: 71 IDPWNPEREAVPEREGLSEIFSPIRKAVKNHDCKRAVLVGHNATFDHNFIFAAALRADIR 130 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + L CK GI S++ H A D+ +D++ + Sbjct: 131 RNPFHPFSTFDTATLAGLAY--GHTVLAQACKLAGIPFSNKEAHSAAYDAEKTADLFCGI 188 Query: 175 M 175 + Sbjct: 189 V 189 >gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus XylebKG-1] gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus XylebKG-1] Length = 341 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 10/186 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRII L + + P + P + +HG+T + L Sbjct: 21 VVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNP---ERDPGPVWIHGLTSDVL 76 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + E ++ +AHNA FD I E R + R+ T+++A Sbjct: 77 EGAPLFPEVAEELSARLADRVL--VAHNAAFDWSMIAREYARASVVAPVEQRLC-TIALA 133 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + P + L SL +G+ + R+ H AL D+ +L++ + + ++ E Sbjct: 134 KELRLPLPNHKLASLAAHFGV-VQQRAHH-ALDDARVLAEAFRPSLHAAARGGVRLPLLE 191 Query: 190 DRFFKE 195 R E Sbjct: 192 CRPLTE 197 >gi|262368659|ref|ZP_06061988.1| ribonuclease T [Acinetobacter johnsonii SH046] gi|262316337|gb|EEY97375.1| ribonuclease T [Acinetobacter johnsonii SH046] Length = 219 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 28/188 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLHGITD 67 +V D+ET G +++ D ++EI A+ ++ N Q P + N E L + Sbjct: 23 VVVDVETAGFNAQTDALLEIAAIPII----YNEEGQFVPGPAHHAHINPFEGANLDRRSL 78 Query: 68 EFLK--------------DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAEL 110 +F+ +K + IF + +QN A + HNA FD+GF+ A + Sbjct: 79 DFIGIDPFNPMRMAMAEDEKTALKRIFKAVNEVRRQQNCTHAVLVGHNAHFDLGFVQAAI 138 Query: 111 QRI---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 R N++P + DT++++ + L C + GI R H AL D+ Sbjct: 139 ARTGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLAKSCIQAGIEFDGREAHSALYDTQKT 196 Query: 168 SDVYIKMM 175 ++++ ++ Sbjct: 197 AELFCYIL 204 >gi|238898583|ref|YP_002924264.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466342|gb|ACQ68116.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 221 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L + ++ + P +G PEAL +G Sbjct: 27 VVIDVETAGFNTKTDALLEIAAVTLFMDKEGWLHIEQSMHFHVEPFSGANFEPEALAFNG 86 Query: 65 I-TDEFLKDKPS----FSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR--IN 114 I L+D S IF EQ A +AHNA FD F+ +R + Sbjct: 87 IDPHSPLRDAKSEFEVLKKIFKWVQKGMKEQYCKRAIIVAHNAGFDHAFVMNAAKRTGLK 146 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C G+ H AL D+ + ++ ++ Sbjct: 147 QNPFHPFSTFDTAALSGLA--LGQTVLAKACLTAGLNFDMSRAHSALYDTQQTARLFCEL 204 Query: 175 M 175 + Sbjct: 205 V 205 >gi|269102313|ref|ZP_06155010.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268162211|gb|EEZ40707.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 242 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 21/170 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL+SK D I+ IG + + ++ Q ++ R + E++ +HGIT Sbjct: 53 VALDFETTGLNSKTDDIVSIGLIPFTIHRIYSKQAQHWVVKPKRPLAEESVVIHGITHSD 112 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128 ++ P I + D + + H + F++A LQ RI + P ++DTL+ Sbjct: 113 IQAAPDLRRILDQVLDALAGKVV--VVHYKTIERQFMDAALQLRIGEGIEFP--VVDTLA 168 Query: 129 ----IARRKHPSSRN----------DLNSLCKRYGITISHRSKHGALLDS 164 I R+KH N LN +RYG+ H AL D+ Sbjct: 169 LEYEIERQKHSGFWNRLRGRRPGSVRLNKCRERYGLPTY--QPHHALTDA 216 >gi|194442926|ref|YP_002041143.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401589|gb|ACF61811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 +RR P + +L K +++ H AL D ++ + + I +M Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|168238504|ref|ZP_02663562.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735808|ref|YP_002114913.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930999|ref|ZP_03221825.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194711310|gb|ACF90531.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288686|gb|EDY28061.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320043|gb|EDZ05248.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322616877|gb|EFY13785.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618116|gb|EFY15008.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625787|gb|EFY22606.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626239|gb|EFY23049.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632652|gb|EFY29397.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638997|gb|EFY35690.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640437|gb|EFY37090.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644201|gb|EFY40746.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649525|gb|EFY45957.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655432|gb|EFY51740.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660811|gb|EFY57042.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662892|gb|EFY59099.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668077|gb|EFY64236.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674164|gb|EFY70258.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675483|gb|EFY71557.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683103|gb|EFY79119.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686797|gb|EFY82775.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195312|gb|EFZ80492.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199204|gb|EFZ84299.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202983|gb|EFZ88016.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207461|gb|EFZ92409.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213958|gb|EFZ98726.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217444|gb|EGA02163.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219962|gb|EGA04435.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231467|gb|EGA15580.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235907|gb|EGA19986.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240478|gb|EGA24521.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245369|gb|EGA29369.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246734|gb|EGA30706.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253590|gb|EGA37418.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255358|gb|EGA39128.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260250|gb|EGA43871.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266842|gb|EGA50328.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269048|gb|EGA52504.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 +RR P + +L K +++ H AL D ++ + + I +M Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|315652207|ref|ZP_07905202.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986] gi|315485513|gb|EFU75900.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986] Length = 237 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 11/164 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG+ D+IIE+G +++++ S F + PN S + L L GI + Sbjct: 7 VAIDLETTGISVSKDKIIEVGLIKVIN-SHIEEMFSCIINPN-MPVSTKILNLTGIDENE 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLS 128 +K + + +F + + I HN FD FI E N L+ R IDT Sbjct: 65 IKTARYIQDVIGDIVEFCD--GFDLIGHNTIFDYSFIKKEA---NNAGLNFEKRGIDTYK 119 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + ++ P + +L C +G I ++ H A D++ +Y Sbjct: 120 LCKKILPPYIQKNLTDACAYFG--IERKNMHRAFSDAYFTHMLY 161 >gi|149196822|ref|ZP_01873875.1| exonuclease [Lentisphaera araneosa HTCC2155] gi|149139932|gb|EDM28332.1| exonuclease [Lentisphaera araneosa HTCC2155] Length = 261 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 10/151 (6%) Query: 2 IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N R IVF D+ETTGL+ DRIIEI +++ + R + + S EA Sbjct: 1 MKLNLQRPIVFFDLETTGLNPTEDRIIEICCIKV--HPDGKRDIKTRRVNPEKPISSEAS 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119 ++ GITDE +KD+P+F + + FF + + +N +FD+ + E +R D Sbjct: 59 EITGITDEDVKDEPTFKQMAKGIYKFF--EGCDISGYNIMRFDLRVLTEEFKRAGI-SFD 115 Query: 120 PSR--IIDTLSIARRKHPSS-RNDLNSLCKR 147 S ++D I +K P + L CK+ Sbjct: 116 ASAHDLVDVQRIFHKKEPRTLEAALRFYCKK 146 >gi|242309952|ref|ZP_04809107.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT 98-5489] gi|239523249|gb|EEQ63115.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT 98-5489] Length = 247 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 17/183 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEAL-KLHGITDE 68 + DIET G + + IEIGA+ L + FQ F+ C + PE + K+ IT E Sbjct: 73 IVDIETNGHNPFLHQPIEIGAI-LYQNGMVQKEFQSFVFC----EEIPEYITKITNITTE 127 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTL 127 L++ P + F F + ++AHN FD GF++ L L +PS + T+ Sbjct: 128 MLRNAPPIHQVLESFRIFLGD--CVFVAHNVGFDYGFLSNSLHHYGFGYLYNPS--LCTI 183 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A++ + R L L + I+H H AL D+ + +V+ G +N T Sbjct: 184 KLAQKTFQAPRYSLEFLNGF--LNINHSPLHRALEDAKVALEVF---KTGLKNLNKNIYT 238 Query: 188 NED 190 +ED Sbjct: 239 SED 241 >gi|152970907|ref|YP_001336016.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895421|ref|YP_002920156.1| exodeoxyribonuclease X [Klebsiella pneumoniae NTUH-K2044] gi|150955756|gb|ABR77786.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547738|dbj|BAH64089.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 219 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 29/168 (17%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D TN L R SP+A+ +H IT+E + Sbjct: 4 VIDTETCGLQGG---IVEIASVDIVDGQITNPMSH--LVRPDRPISPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP I + + W +AHNA FD +R+ P I T+ + Sbjct: 59 ADKPWIEEIIPHY------HGSPWYVAHNASFD--------RRVL--PEMHGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDV 170 ARR P + L K + ++ HR+ + + + LL D+ Sbjct: 103 ARRLWPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLLDI 150 >gi|289640817|ref|ZP_06472988.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca glomerata] gi|289509393|gb|EFD30321.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca glomerata] Length = 629 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 5/123 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + + I EIGAV++ + + P+ P L GITD Sbjct: 94 VVVDLETTGSRAADSEITEIGAVKIRG-GEVLAELATLVRPDA-PIPPFISVLTGITDAM 151 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + F +F + + +AHNA FD+GF+ R P+ +DTL I Sbjct: 152 VATAPRIDAALPTFLEFAH--GSVLVAHNAPFDLGFLREACVRCGH-PVPDWEHLDTLRI 208 Query: 130 ARR 132 AR+ Sbjct: 209 ARQ 211 >gi|168462596|ref|ZP_02696527.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633859|gb|EDX52211.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 +RR P + +L K +++ H AL D ++ + + I +M Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|317492115|ref|ZP_07950545.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919820|gb|EFV41149.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA] Length = 218 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+ + ++EI AV L + + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFDANTNALLEIAAVTLRMTDDGWLEPDETLHFHVEPFVGSVLVPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114 I E + + + +IF E + A +AHNA FD F+ A +R+ Sbjct: 80 IDPENPLRGAVSEYEALHAIFKAVRKGIKEHDCNRAVIVAHNAHFDHSFVMAAAERVGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C I H AL D+ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAANIPFDSTQAHSALYDTEQTATLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|229525619|ref|ZP_04415024.1| ribonuclease T [Vibrio cholerae bv. albensis VL426] gi|229339200|gb|EEO04217.1| ribonuclease T [Vibrio cholerae bv. albensis VL426] Length = 224 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD F+ A +R + Sbjct: 80 IYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|224541140|ref|ZP_03681679.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM 15897] gi|224525949|gb|EEF95054.1| hypothetical protein CATMIT_00292 [Catenibacterium mitsuokai DSM 15897] Length = 297 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 +FDIE L++ + IG V L D K TF + P P K+H I + L Sbjct: 7 IFDIEE--LNNDPVSVCSIGIVVLEDM-KVKETFYSLIRPPKLTFDPYRYKVHKIRPQDL 63 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129 K +P+F I+ + +F +N+ I+H+ + D+ + A +R + P + TL + Sbjct: 64 KKQPTFPEIWPKISKYF--ENSIVISHDIQSDLNHLLAVFRRFRIRKPT--CYLSCTLVL 119 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ HP + L SLC Y + + + H AL DS +++ KMM Sbjct: 120 AKLFHPELQKYGLGSLCDFYSVDL--ENAHNALADSLACAELLKKMM 164 >gi|53803894|ref|YP_114507.1| ribonuclease T [Methylococcus capsulatus str. Bath] gi|53757655|gb|AAU91946.1| ribonuclease T [Methylococcus capsulatus str. Bath] Length = 209 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET+G D + ++EI AV L +D S RT Q+ + P G K AL + Sbjct: 18 VVVDVETSGFDPHANALLEIAAVHLDMDESGNLHPVRTHQLHVKPFEGAKLDEAALNFNK 77 Query: 65 ITD----EFLKD-KPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINA--ELQRIN 114 I F D + + S IF + A + HN FD+ F+NA RI Sbjct: 78 INPFHPFRFAVDEREALSQIFDAVQQSIRQHGCTRAILVGHNPAFDIAFLNAASSRARIK 137 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 K+P P DT ++ + + L + G++ H+ H A D++ + ++ + Sbjct: 138 KNPFHPFSTFDTATLGGLAY--GQTVLARAAQAAGLSWDHQEAHSAAYDANQTARLFCTI 195 Query: 175 M 175 + Sbjct: 196 V 196 >gi|256390707|ref|YP_003112271.1| exonuclease RNase T and DNA polymerase III [Catenulispora acidiphila DSM 44928] gi|256356933|gb|ACU70430.1| Exonuclease RNase T and DNA polymerase III [Catenulispora acidiphila DSM 44928] Length = 295 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 20/161 (12%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 ++ R FD ETTG D K+ RI+ V ++ + FL G + EA +HG Sbjct: 68 HRRRLAGFDTETTGRDPKSVRIVSAALV------TSDGAEKAFLIDPGVEIPAEATAIHG 121 Query: 65 ITDEFLKDKPSFS-SIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR------IN 114 IT E+ ++ + E D + + NA +D+ + AEL R + Sbjct: 122 ITTEYAREHGTEPRRTLDEIADALAAELRAGTPLVVFNAPYDLTLLEAELARNGLTPLAS 181 Query: 115 KDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITIS 153 + P+ P +ID L I R+ K L + C+ YG+TI+ Sbjct: 182 RAPVAP--VIDPLVIDRQMDKFRKGARTLEAQCQFYGVTIT 220 >gi|229172279|ref|ZP_04299843.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3] gi|228611267|gb|EEK68525.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3] Length = 934 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL+ + + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRWAGYTEVHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|162447750|ref|YP_001620882.1| DNA polymerase III subunit epsilon [Acholeplasma laidlawii PG-8A] gi|161985857|gb|ABX81506.1| DNA polymerase III, epsilon subunit [Acholeplasma laidlawii PG-8A] Length = 227 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 14/162 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-----FLCPNGRKNSPEALKLHG 64 +VFD ETTGL K D++IE+GAV L K T+++ +L + L G Sbjct: 9 LVFDFETTGLTPKRDKVIEVGAVLL---EKIGDTYEIVQEIDYLIKQQTPITDFISNLTG 65 Query: 65 ITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSR 122 IT+E L +D F + + +E + +A+N FD+GF++A Q + + + Sbjct: 66 ITNEMLARDGVEEEYAFRQLDNLIDE-DTLLVAYNLAFDIGFLSALYQTYVAHNYKIQND 124 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 I+D +++ + ++P N++ + +S+ H A D+ Sbjct: 125 ILDCMAVYKDRYPYPHKLENAVAR---FELSNNQAHRASEDA 163 >gi|325288177|ref|YP_004263967.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489] gi|324323631|gb|ADY31096.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489] Length = 454 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 9/161 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ DIETTG + I EI A+ D K F + P ++ P +KL GI D+ Sbjct: 3 VILDIETTGGKFNEEGITEI-AIHRFDGHKVVDKFISLVNPE-KEIQPFVVKLTGINDKM 60 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P F I + ++A +AHNA+FD + E +R+ + + + T+++ Sbjct: 61 LRTAPKFYEIAKRIVEI--TEDAVLVAHNAQFDYRILRTEFRRLGYNF--ERKTLCTVNL 116 Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167 ++ P + L L + GI +S HR+ AL L Sbjct: 117 SKELIPDKESYSLGKLVRSLGIPVSDRHRANGDALATLQLF 157 >gi|318060902|ref|ZP_07979623.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] Length = 239 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 17/165 (10%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDEFL 70 FD+ETTG D + DRI+ AV LD S T + +L G + EA +HGI T Sbjct: 11 FDLETTGTDVEQDRIV-TAAVIRLDSSGTVAHTRTWLLDPGVEIPAEATAIHGIPTARAR 69 Query: 71 KDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL------DPS 121 D +E + + + NA++D+ ++ E +R L +P+ Sbjct: 70 ADGAPARGAVAEITEALAAELRAGTPLVVMNARYDLSLLDRECRRHGVPALAELLGAEPA 129 Query: 122 RIIDTLSI---ARRKHPSSRNDLNSLCKRYGITI--SHRSKHGAL 161 +ID L + A R SR L +LC YG+ + +H ++ AL Sbjct: 130 PVIDPLVLDKHADRYRRGSRV-LAALCAHYGVRLDTAHDARSDAL 173 >gi|238753629|ref|ZP_04614991.1| Ribonuclease T [Yersinia ruckeri ATCC 29473] gi|238708181|gb|EEQ00537.1| Ribonuclease T [Yersinia ruckeri ATCC 29473] Length = 217 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L +D + + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDENGWLQRDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFI--NAELQRIN 114 I + + + +IF ++ A +AHNA FD F+ AE + Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFVMEAAERACLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ ++++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSTQAHSALYDTEQTAELFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|319936397|ref|ZP_08010813.1| DNA polymerase III [Coprobacillus sp. 29_1] gi|319808512|gb|EFW05064.1| DNA polymerase III [Coprobacillus sp. 29_1] Length = 187 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 11/130 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +D+IIE+G +++ + ++ Q L R+ SP KL GIT++ L Sbjct: 24 VIDLETTGLSWADDKIIEVGILKIRNQQIIDKYSQ--LINPEREVSPFITKLTGITNDML 81 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSI 129 P+ I + + F + + HN FD+ F+ N+ +D + +DTL Sbjct: 82 LGMPTLDEIRDDVFSFIGDDI--LLGHNTSFDLNFVA------NQFHIDIENEYMDTLQF 133 Query: 130 ARRKHPSSRN 139 R+ +P ++ Sbjct: 134 CRKVYPHMKH 143 >gi|57242277|ref|ZP_00370216.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis RM3195] gi|57016957|gb|EAL53739.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis RM3195] Length = 260 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 11/163 (6%) Query: 3 RKNKMRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 R +K+++ VF DIE+TG + +I+EIGAV++ ++ + +R F+ F+ + Sbjct: 63 RTSKIKEQVFCIVDIESTG-GINSGQILEIGAVKIQNHKELDR-FESFV--KVDEIPLNI 118 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 KL GI +KD P+ + + F F N+ + ++AHN KFD FI+ L L Sbjct: 119 TKLTGIELNMVKDAPNLTRVLEAFRLFLND--SVFVAHNVKFDYNFISKSLYECGFGIL- 175 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGAL 161 +R I T+ A+ SS L++L + I +I HR+ + AL Sbjct: 176 LNRKICTVDFAQCCIQSSHYKLDTLKEILKIESIHHRALNDAL 218 >gi|302059908|ref|ZP_07251449.1| ribonuclease T [Pseudomonas syringae pv. tomato K40] Length = 225 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQV--FLCPNGRKNSPE--A 59 +V D+ET G +S D ++EI AV + + + F+V F+ N + E Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFTG 92 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114 +KL + ++ + + IF + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ GI R H A D+ ++++ + Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKPAELFCGI 210 Query: 175 M 175 + Sbjct: 211 V 211 >gi|228476288|ref|ZP_04060989.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis SK119] gi|314936052|ref|ZP_07843401.1| exonuclease [Staphylococcus hominis subsp. hominis C80] gi|228269571|gb|EEK11077.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis SK119] gi|313655869|gb|EFS19612.1| exonuclease [Staphylococcus hominis subsp. hominis C80] Length = 185 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ET + K I +G V+++D ++ TF + P+ S + +HGI + Sbjct: 7 IALDFETA--NKKRTSICSVGMVKVVD-NEIVETFYTLVNPHDYF-SETHIHVHGIHPKD 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P F +F F N+ +AHNA FD+G ++ L+ +N + + + Sbjct: 63 VKDAPDFKEVFPYMLQFINQ--LPVVAHNAAFDMGVLHQSLKHLNI-AVPSLTYFCSYQL 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 ARR + R L L Y + H AL D+ Sbjct: 120 ARRTIKAYRYGLKHLMNHYNLNF--HGHHDALNDA 152 >gi|168241502|ref|ZP_02666434.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450291|ref|YP_002045931.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408595|gb|ACF68814.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339659|gb|EDZ26423.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 232 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 +RR P + +L K +++ H AL D ++ + + I +M Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|315127223|ref|YP_004069226.1| ribonuclease T [Pseudoalteromonas sp. SM9913] gi|315015737|gb|ADT69075.1| ribonuclease T [Pseudoalteromonas sp. SM9913] Length = 224 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 23/184 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI A L +D + T + P G A++ +G Sbjct: 19 VVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIEFNG 78 Query: 65 IT-----------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR- 112 I +E +K+ + + Q + +AHNA FD GF+NA ++R Sbjct: 79 IEPFSALRGAVPEEEAIKE---ICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERN 135 Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I + P P DT S+A + L C+ GI ++ H AL D+ +++Y Sbjct: 136 NIKRTPFHPFVSFDTTSLAGLA--LGQTVLAKACRAAGIEFDNKQAHSALYDTERTAELY 193 Query: 172 IKMM 175 ++ Sbjct: 194 CLIV 197 >gi|255038895|ref|YP_003089516.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM 18053] gi|254951651|gb|ACT96351.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM 18053] Length = 174 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 9/151 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG RI EI AV D ++ F + P P +L GI +E + Sbjct: 4 IVDIETTG-GGGTSRITEI-AVFRHDGARIVDFFHSLINPE-IYIPPFITRLTGIDNEMV 60 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD P+F + ++A ++AHNAKFD GFI E + D ++ T+ ++ Sbjct: 61 KDAPTFYEVQDAVRAM--TRDAWFVAHNAKFDYGFIKREFGAL--DEYFQRDLLCTVQLS 116 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK-HG 159 R+ P ++ L +LC+ I I +R + HG Sbjct: 117 RKIFPGLKSYSLGNLCESLEIMIENRHRAHG 147 >gi|146311450|ref|YP_001176524.1| ribonuclease T [Enterobacter sp. 638] gi|166991090|sp|A4W9U3|RNT_ENT38 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|145318326|gb|ABP60473.1| RNAse T [Enterobacter sp. 638] Length = 224 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVDPFEGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +I+ + N A +AHNA FD F+ A +R + Sbjct: 80 IDPHNPLRGAVSEYDALHAIYKMVRKGMKDSNCNRAIMVAHNATFDHSFMMAASERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C GI H AL D+ ++++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACITAGIDFDGNQAHSALYDTERTAELFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|166711531|ref|ZP_02242738.1| ribonuclease T [Xanthomonas oryzae pv. oryzicola BLS256] Length = 211 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 17/181 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63 +V D+ET G DS ++EI V + +D T L P G + P++L++ Sbjct: 25 PVVVDVETGGFDSNKHALLEIACVPIEMDADGRFFPGDTASAHLVPAPGLEIEPKSLEIT 84 Query: 64 GITDEFL-----KDKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI + ++K + +F+ + Q A + HNA FD+ F+NA + R+ Sbjct: 85 GIVLDHPFRLAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 144 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P + DT+++A + + L + G+ + H A+ D+ + ++ K Sbjct: 145 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 202 Query: 174 M 174 + Sbjct: 203 I 203 >gi|288803395|ref|ZP_06408828.1| exonuclease [Prevotella melaninogenica D18] gi|288334215|gb|EFC72657.1| exonuclease [Prevotella melaninogenica D18] Length = 284 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGLD NDRII+I +++ K R +F+ P + E L GI+D Sbjct: 10 IVFDLETTGLDLVNDRIIQISFIKVHPDGKEERE-NIFINPE-KPIPAEVTLLTGISDAD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127 + D P+F + D F ++ +N+ +FDV + E R D R+ID Sbjct: 68 VADAPTFKQKAKDLSDKF--AGCDFAGYNSNRFDVPMLAEEFLRAGVDFDFSKCRLIDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 +I H R +L + K Y Sbjct: 126 NIY---HKMERRNLAAAYKFY 143 >gi|282878677|ref|ZP_06287446.1| exonuclease [Prevotella buccalis ATCC 35310] gi|281299222|gb|EFA91622.1| exonuclease [Prevotella buccalis ATCC 35310] Length = 284 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 11/142 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 IVFD+ETTGLD DRII+I +++ K R + N KN P E L GIT+E Sbjct: 10 IVFDLETTGLDLVKDRIIQISYIKVFPDGKEERE---NILVNPEKNIPLEVSALTGITNE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDT 126 + D P F I + + F + ++ +N+ FD+ + E R D S ++D Sbjct: 67 DVADAPKFQDIAQKLAEEF--KGCDFAGYNSNHFDIPILAEEFLRAGIDFDFSKSNLVDA 124 Query: 127 LSIARRKHPSSRNDLNSLCKRY 148 +I H R +L + K Y Sbjct: 125 QAIF---HKMERRNLAAAYKFY 143 >gi|261339587|ref|ZP_05967445.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316] gi|288318408|gb|EFC57346.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316] Length = 216 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 22/195 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + + +IF + + A +AHNA FD F A +R + Sbjct: 80 IDPKNPLRGAVSEYDALHAIFKMVRKGMKDNDCSRAIMVAHNATFDHSFTMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C GI H AL D+ ++++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACITAGIEFDGTQAHSALYDTERTAELFCEI 197 Query: 175 M-----VGGSQINFG 184 + +GG + G Sbjct: 198 VNRWKRLGGWPLPMG 212 >gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 11379] gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] Length = 343 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 12/187 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRII L + + P + P + +HG+T + L Sbjct: 23 VVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNP---ERDPGPVWIHGLTSDVL 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129 + P F + E ++ +AHNA FD I E R + P++ + + T+++ Sbjct: 79 EGAPLFPEVAEELSARLADRV--LVAHNAAFDWSMIAREYARASVVAPVE--QRLCTIAL 134 Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A+ + P + L SL +G+ + H AL D+ +L++ + + ++ Sbjct: 135 AKELRLPLPNHKLASLAAHFGVV--QQQAHHALDDARVLAEAFRPSLHAAARGGVRLPLL 192 Query: 189 EDRFFKE 195 E R E Sbjct: 193 ECRPLTE 199 >gi|167771957|ref|ZP_02444010.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM 17241] gi|167665755|gb|EDS09885.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM 17241] Length = 270 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 10/134 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCPNGRKNSPEALKLHG 64 I+FD ET+GLD D+IIE+ A+ + + + Q P G++ + + ++L G Sbjct: 39 ILFDTETSGLDFDKDQIIELAALRIEQTAAKGLRIAGQMDQFIRLPEGQQLTEKIVELTG 98 Query: 65 ITDEFLK-DKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPS 121 ITD L+ + + + F N + +AHNA+FD+ F+ + L+ + P Sbjct: 99 ITDRILEAEGVAPHKAATAFAKLINAGDGPVLLVAHNAQFDLLFVRSLLKGVKLAP--RL 156 Query: 122 RIIDTLSIARRKHP 135 +DTL++ + + P Sbjct: 157 EFLDTLTVYKDRRP 170 >gi|169827550|ref|YP_001697708.1| ATP-dependent helicase dinG [Lysinibacillus sphaericus C3-41] gi|168992038|gb|ACA39578.1| Probable ATP-dependent helicase dinG [Lysinibacillus sphaericus C3-41] Length = 923 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 12/131 (9%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 + D+ETTG N DR+I+I V + D+ + RT+ F+ P K P ++ L IT+E Sbjct: 9 IVDLETTGHSPANGDRMIQIAIVIMKDW-EIERTYTKFINPG--KAIPTFIQDLTHITNE 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KD S F E D+ E A+ ++AHNA FD+ F+ AE +R P + +DT Sbjct: 66 DVKD----SYPFEEHADYIYELLADCVFVAHNADFDLSFLQAEFKRAGL-PKWQGKKMDT 120 Query: 127 LSIARRKHPSS 137 + +A+ P S Sbjct: 121 VELAKILFPMS 131 >gi|239940309|ref|ZP_04692246.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] Length = 341 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 12/187 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRII L + + P + P + +HG+T + L Sbjct: 21 VVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNP---ERDPGPVWIHGLTSDVL 76 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129 + P F + E ++ +AHNA FD I E R + P++ + + T+++ Sbjct: 77 EGAPLFPEVAEELSARLADRV--LVAHNAAFDWSMIAREYARASVVAPVE--QRLCTIAL 132 Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A+ + P + L SL +G+ + H AL D+ +L++ + + ++ Sbjct: 133 AKELRLPLPNHKLASLAAHFGVV--QQQAHHALDDARVLAEAFRPSLHAAARGGVRLPLL 190 Query: 189 EDRFFKE 195 E R E Sbjct: 191 ECRPLTE 197 >gi|217970527|ref|YP_002355761.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|217507854|gb|ACK54865.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 203 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D ETTGL ++ DR EI AV + D +R +Q + N P ++ L GIT+ Sbjct: 6 VIDFETTGLSPAQGDRATEIAAVIVEDGRVVDR-YQSLM--NAGVRIPAYIEALTGITNA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 ++ P + + DF + +AHNA FD F +AEL RI ++ Sbjct: 63 MVRSAPLAGEVMRDVSDFVGDM--PIVAHNASFDAKFWDAELGRIQRN 108 >gi|225010791|ref|ZP_03701259.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium MS024-3C] gi|225004999|gb|EEG42953.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium MS024-3C] Length = 204 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 17/166 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD 67 IV D ETTG D + +RI+ IGAV LL+ S+ +F+V+L + NS ++ +HGI Sbjct: 20 IVIDTETTGFDYEKERILCIGAV-LLEKSQIAVKDSFEVYLTQD-HYNS-DSTPIHGILK 76 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E K+K + F + NA IAH+ FDV IN L R P ++++DT+ Sbjct: 77 EEKKEKTAEIEALKSFLTYIG--NAPIIAHHTMFDVNMINKALHR-QGLPSLKNKLLDTV 133 Query: 128 SIARRKHPSS-------RNDLNSLCKRYGITISHRSKHGALLDSHL 166 + ++ S L+ L ++ IS + +H AL D+++ Sbjct: 134 VLYKKSLLRSPLIEKKDHYSLDELADKFN--ISKKDRHTALGDAYI 177 >gi|256390076|ref|YP_003111640.1| exonuclease RNase T and DNA polymerase III [Catenulispora acidiphila DSM 44928] gi|256356302|gb|ACU69799.1| Exonuclease RNase T and DNA polymerase III [Catenulispora acidiphila DSM 44928] Length = 204 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 7/160 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G I+E+ V + + ++ L P G A ++HGIT E + Sbjct: 14 VVDVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLLRPQGGVG---ATRVHGITREMV 70 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + E ++ +AHN FD F+ + R+ + + TL + Sbjct: 71 EPAPRFEDVGMELHGLLVDRVV--VAHNLAFDAKFLVTQFARLGVHSPEIAGGACTLRTS 128 Query: 131 RRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLS 168 + P L C+ G+ T +H + AL + LL Sbjct: 129 QAMLPGPSYKLLDCCEAVGVELTDAHSALGDALATARLLG 168 >gi|312864644|ref|ZP_07724875.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei F0415] gi|311099771|gb|EFQ57984.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei F0415] Length = 823 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 21/181 (11%) Query: 1 MIRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M K + RK V D+E T S +II++G V +++ + +T+Q + P+ EA Sbjct: 1 MTDKKQGRKYAVVDLEATSA-STTAQIIQVGIV-IVEQGQIVQTYQTDVNPH------EA 52 Query: 60 LKLH-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 L H GITD+ L P FS + + + Q+ ++AHN KFD + +L Sbjct: 53 LTQHIIDLTGITDQQLAQAPDFSQVAGDIFQLI--QDCIFVAHNVKFDANLLAEQLFLEG 110 Query: 115 KDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P +DT+ +++ P+ R L+ L K + ++H H A+ D++ + + I Sbjct: 111 YELRTPR--VDTVELSQVFFPTLERYRLSDLAKYLDLDLTH--AHTAIADAYATAQLLIS 166 Query: 174 M 174 + Sbjct: 167 I 167 >gi|240173340|ref|ZP_04751998.1| DNA polymerase III subunit epsilon [Mycobacterium kansasii ATCC 12478] Length = 329 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII I + L + ++ L P P + +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISIAVLGLDADGRVEQSLVSLLNPG---VDPGSTHIHGLTAGML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 +D+P F+ I + + + +AHN FD F+ AE + + P+D ++ T+ + Sbjct: 75 EDQPQFADIVGDVVELLRGRTL--VAHNVAFDYAFLAAEAEMAGAELPVD--TVMCTVEL 130 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +RR N L +L +G+ I R H A D+ +L+ V + Sbjct: 131 SRRLELGVDNLRLETLAAHWGV-IQER-PHDAFDDARVLTGVLAAAL 175 >gi|238762495|ref|ZP_04623465.1| Ribonuclease T [Yersinia kristensenii ATCC 33638] gi|238699140|gb|EEP91887.1| Ribonuclease T [Yersinia kristensenii ATCC 33638] Length = 226 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 22/195 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF ++ A +AHNA FD F+ A +R + Sbjct: 91 IDPSNPLRGAVSEHDALHAIFKAVRKGLKDKGCNRAIIVAHNAHFDHSFVMAAAERASLK 150 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ + ++ ++ Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCEL 208 Query: 175 M-----VGGSQINFG 184 + +GG + G Sbjct: 209 VNRWKKLGGWPVPAG 223 >gi|29833361|ref|NP_827995.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis MA-4680] gi|29610484|dbj|BAC74530.1| putative DNA polymerase III epsilon subunit [Streptomyces avermitilis MA-4680] Length = 241 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 13/154 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ AV + D +L G A +HG+TDE L Sbjct: 11 AFDTETTGVDVETDRIVS-AAVVVQDAPGARPRVSRWLVNPGVPVPAGATAVHGLTDEHL 69 Query: 71 KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLD------P 120 + + S + E EQ + NA FD+ ++ EL+R LD P Sbjct: 70 QRNGRWPSPVMDEIARELGEQATAGRPLVVMNAPFDLTLLDRELRRHRASCLDHWFESAP 129 Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 R++D + + ++ R L LC Y + + Sbjct: 130 LRVLDPRVLDKHLDRYRKGRRTLTDLCAHYDVAL 163 >gi|296133462|ref|YP_003640709.1| DnaQ family exonuclease/DinG family helicase [Thermincola sp. JR] gi|296032040|gb|ADG82808.1| DnaQ family exonuclease/DinG family helicase [Thermincola potens JR] Length = 994 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 15/157 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIETTGL+ + IIE+ AV + + TFQ + P +K + +L GI + Sbjct: 7 VAVDIETTGLNPADSEIIEVAAVRFAE-GRVLETFQSLVKPE-KKIPLKIQQLTGINESM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTLS 128 + D P+ + + +F ++ I HN FD+ F+ + P+ +R DTL Sbjct: 65 VADAPACAEVTGMLAEFVHDSII--IGHNIGFDLNFLQ------HYHPVFIRARYYDTLP 116 Query: 129 IARRKHPSSRN-DLNSLCKRYGITIS---HRSKHGAL 161 +AR P + L +L + I ++ HR+ H AL Sbjct: 117 LARLVWPKAHGYRLANLVEALKIQLNGSPHRAFHDAL 153 >gi|157736758|ref|YP_001489441.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] gi|315635934|ref|ZP_07891196.1| exonuclease [Arcobacter butzleri JV22] gi|157698612|gb|ABV66772.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] gi|315479913|gb|EFU70584.1| exonuclease [Arcobacter butzleri JV22] Length = 202 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 19/175 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ETTGL+ K D II IGAV + D + +++ F F+ P + + EA+K+H I + Sbjct: 33 VCFDCETTGLNPKKDDIISIGAVIIKDNTIISSKKFVKFIKPKTKLQA-EAIKVHHIREC 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + EF +F N + + +FD+ IN L K L + TL Sbjct: 92 DLNNANDIDLVIEEFLEFIG--NRTLVGYFLEFDISMINKYL----KPKLGITLPNKTLE 145 Query: 129 IARRKH-------PSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ H P DL NS+ + + I KH A D+ + + ++IK+ Sbjct: 146 VSEIYHDYKIEIIPQGHIDLRFNSIMEE--LEIPSLGKHDAFNDALMTAMIFIKL 198 >gi|309790215|ref|ZP_07684787.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] gi|308227800|gb|EFO81456.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] Length = 935 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 15/168 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 + D+ETTGL + D IIE AV+ D R F + P R+ P + +L GIT + Sbjct: 7 VALDVETTGLQAGIDEIIEFAAVKFRDGEILER-FSQLIAP--RQPLPLKITRLTGITAQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P F+ + + F ++ + H+ FD+G + A+ + + DT Sbjct: 64 DLADAPHFNDVGGKIAGFI--KSYPLVGHSINFDLGMLRAQGMNFTQP------VYDTFD 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A P + L ++ R G I H H AL D+ + + V+ ++ Sbjct: 116 LATILMPQIAVYKLGAIADRLG--IPHPDDHRALNDAEVTAHVFTHLL 161 >gi|153829541|ref|ZP_01982208.1| ribonuclease T [Vibrio cholerae 623-39] gi|148875001|gb|EDL73136.1| ribonuclease T [Vibrio cholerae 623-39] Length = 243 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G AL+ G Sbjct: 39 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 98 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ S E + EQ A +AHNA FD F+ A +R + Sbjct: 99 IYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 158 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 159 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 216 Query: 174 MM 175 ++ Sbjct: 217 IV 218 >gi|306833904|ref|ZP_07467028.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis ATCC 700338] gi|304423905|gb|EFM27047.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis ATCC 700338] Length = 827 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 90/175 (51%), Gaps = 10/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + + D+E TG + + II++G V +++ + +T+Q + P+ S + Sbjct: 1 MMQVNSQKYAIVDLEATGAHAMAE-IIQVGIV-IIENDEIVKTYQTDVNPH-EALSEHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + E ++ ++ ++AHN KFD + +L + P Sbjct: 58 NLTGITDEQLAKAPDFSQVAQEIFNLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +L + ++ H A+ D++ + +++K+ Sbjct: 116 R--VDTVELAQVFYPTFEKYSLGNLADVLALDLA--DAHTAISDAYATAQLFLKL 166 >gi|296119762|ref|ZP_06838316.1| putative DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] gi|295966916|gb|EFG80187.1| putative DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] Length = 1149 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 11/160 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D E TGL S DRI+EIG V L + + +T+ + PN + P + +H +T L Sbjct: 9 VVDFEATGL-SAADRIVEIGVVLLDNNLEVEQTWDTLVQPN--REVPNSF-VHKLTTADL 64 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 + P+F I ++F + + +AHNA F+ F+ E R+ P S IIDT + Sbjct: 65 EKAPTFEGISAKFASLLDGRTV--VAHNASFEEHFMRQEFSRLGVLWPNYGSWIIDTAVL 122 Query: 130 ARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLL 167 + + +++ + GI H++ GA+ + LL Sbjct: 123 SEKFL--NKSQFQEVLAAAGIINKNPHQALSGAMATADLL 160 >gi|296876164|ref|ZP_06900218.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit [Streptococcus parasanguinis ATCC 15912] gi|296432875|gb|EFH18668.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit [Streptococcus parasanguinis ATCC 15912] Length = 817 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 90/175 (51%), Gaps = 11/175 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M R+ + IV D+E T S N +II++G V +++ + ++++ + P+ R + Sbjct: 1 MTRQKRKYAIV-DLEATSAGS-NAKIIQVGIV-IIEDGRITQSYETDVNPHERLDE-HIK 56 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD L+ P F+ + E ++ ++A ++AHN KFD + L + P Sbjct: 57 QLTGLTDARLRKAPEFAQVAKEIFELI--EDAVFVAHNVKFDANLLAEALFWEGFELTTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +++ +P+ R +L +L I + H H AL D+ + + +K+ Sbjct: 115 R--IDTVELSQIFYPTLERYNLGALAAELEIELHH--AHSALADAMATAQLLLKL 165 >gi|262402653|ref|ZP_06079214.1| ribonuclease T [Vibrio sp. RC586] gi|262351435|gb|EEZ00568.1| ribonuclease T [Vibrio sp. RC586] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ + E + EQ A +AHNA FD F+ A +R + Sbjct: 80 IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTAALSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|261211954|ref|ZP_05926240.1| ribonuclease T [Vibrio sp. RC341] gi|260838562|gb|EEX65213.1| ribonuclease T [Vibrio sp. RC341] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ + E + EQ A +AHNA FD F+ A +R + Sbjct: 80 IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTAALSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|332073070|gb|EGI83549.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Streptococcus pneumoniae GA17570] Length = 168 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736] gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736] Length = 623 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 13/207 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLHGITDE 68 + D+ET+GL DR++ + A+ LD ++ N+T F L P P + +HG+T Sbjct: 34 LVDVETSGLRPGRDRVLSL-AILTLD-ARGNQTGEFATLLNPG---CDPGPVHIHGLTPA 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+F I + + + +AHNA+FD F+ E + + + SR + TL+ Sbjct: 89 RLAGAPTFEEIAPQVGALLSGR--VLVAHNAQFDYDFLAHEFAHV-RSWVPVSRRLCTLA 145 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + R ++ + L +L YG + H A D +LS + + ++ Sbjct: 146 LNRLVGSATPDLKLGTLAAHYG--VRQERAHDAQDDVRVLSGILRGSLGAAERLGLSLPL 203 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFT 214 + ++ + VP R+ FT Sbjct: 204 LDCPPRQDYQPYVPKTPCAYRNPGRFT 230 >gi|330684981|gb|EGG96656.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU121] Length = 902 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + P L I + Sbjct: 8 VVDLETTGNQLDYDDIIQIG----ITFVRQNKIIGTYHSMIRTDLDIPPFIQALTSIEET 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I + + Q+ ++AHN FD+ FI + N P R++DTL Sbjct: 64 MLEQAPYFKEIAQDIYQ--QLQDCVFVAHNVAFDLNFIKKAFKNCNI-KYRPKRVMDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 + + P+ ++ L+ L + + I + +HR+ A +HL+ Sbjct: 121 LFKIAFPTDKSYQLSELAEAHDIPLNNAHRADEDATTTAHLM 162 >gi|258622020|ref|ZP_05717049.1| ribonuclease T [Vibrio mimicus VM573] gi|258627109|ref|ZP_05721905.1| ribonuclease T [Vibrio mimicus VM603] gi|262171988|ref|ZP_06039666.1| ribonuclease T [Vibrio mimicus MB-451] gi|258580627|gb|EEW05580.1| ribonuclease T [Vibrio mimicus VM603] gi|258585773|gb|EEW10493.1| ribonuclease T [Vibrio mimicus VM573] gi|261893064|gb|EEY39050.1| ribonuclease T [Vibrio mimicus MB-451] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + T + P G AL+ G Sbjct: 20 VVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTG 79 Query: 65 ITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAELQR--I 113 I D F L+ + E + EQ A +AHNA FD F+ A +R + Sbjct: 80 IYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKL 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 140 KRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCT 197 Query: 174 MM 175 ++ Sbjct: 198 IV 199 >gi|52424757|ref|YP_087894.1| ribonuclease T [Mannheimia succiniciproducens MBEL55E] gi|52306809|gb|AAU37309.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E] Length = 223 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 20/192 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCP-NGR 53 + KN+ R ++ D+ET G ++K D ++E+ A+ L +D + ++ + P G Sbjct: 19 LLKNRFRGYYPVIIDVETAGFNAKTDALLELAAITLKMDENGLLVPDQKCHFHIKPFEGA 78 Query: 54 KNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFF--NEQNAEW-----IAHNAKFDVGF 105 +PE++K +GI D L+ S + + ++NA +AHNA FD F Sbjct: 79 NINPESIKFNGIDIDNPLRGAVPESEAITGLFQMVRKGQKNAGCQRSIIVAHNATFDQSF 138 Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A R I ++P P DT S++ + L C+ I + H AL D Sbjct: 139 VMAAADRTKIKRNPFHPFSSFDTASLSGLMF--GQTVLVKACQAAHIAFDGKQAHSALYD 196 Query: 164 SHLLSDVYIKMM 175 + ++++ M+ Sbjct: 197 TERTAELFCYMV 208 >gi|326772455|ref|ZP_08231739.1| DNA polymerase III, epsilon subunit [Actinomyces viscosus C505] gi|326637087|gb|EGE37989.1| DNA polymerase III, epsilon subunit [Actinomyces viscosus C505] Length = 280 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 14/149 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69 V D+ETTGL D I+E+ V + R++ + P G P +HG+ E Sbjct: 44 VVDLETTGLSPTTDSILEVALVLTDAAGRVERSWSTLIDPGAGVDVGP--THIHGLVAEE 101 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLS 128 L P F + + +AHNA+FDVGF+ EL + LD +R+ + Sbjct: 102 LIGAPGFDEVADLL--VADLAGRAVVAHNARFDVGFLTQELG--TRGLLDRGARVPRVCT 157 Query: 129 IARRKH----PSSRNDLNSLCKRYGITIS 153 + +H PS R L + C+ G+ I Sbjct: 158 MEWARHFMTTPSRR--LTTCCEVAGVEIG 184 >gi|163751265|ref|ZP_02158493.1| ribonuclease T [Shewanella benthica KT99] gi|161328979|gb|EDQ00053.1| ribonuclease T [Shewanella benthica KT99] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G + + D ++EI AV +L ++T + P G P+AL + Sbjct: 20 VVIDVETAGFNCQTDALLEI-AVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFN 78 Query: 64 GI--TDEF---LKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 GI T+ + +K +F IF E + +AHNA FD GF++ ++R + Sbjct: 79 GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCAL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ L C GI + H AL D+ ++++ Sbjct: 139 KRTPFHPFATFDTAALSGLA--LGHTVLAKACSIAGIDFDNSEAHSALYDTERTAELFCH 196 Query: 174 MM 175 ++ Sbjct: 197 IV 198 >gi|241896118|ref|ZP_04783414.1| DNA-directed DNA polymerase III epsilon subunit [Weissella paramesenteroides ATCC 33313] gi|241870632|gb|EER74383.1| DNA-directed DNA polymerase III epsilon subunit [Weissella paramesenteroides ATCC 33313] Length = 970 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 7/134 (5%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLH 63 NK V D+ETT S++ RII+I A+ + K F + P+ ++ P ++L Sbjct: 30 NKDIYAVVDLETTRTTSESGRIIQI-AIAFVQNKKIINQFSTLINPH--ESIPRNVVQLT 86 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI E + PSF + ++AHN FD+ F+NAE QRI + L+ Sbjct: 87 GINAEMVAGAPSFEEVAESIHTMLT--GTIFVAHNVNFDLPFLNAEFQRIGMNTLNLV-A 143 Query: 124 IDTLSIARRKHPSS 137 IDT+++++ P++ Sbjct: 144 IDTVTLSQIVWPTA 157 >gi|258511090|ref|YP_003184524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477816|gb|ACV58135.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 240 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R ++ R +V D ETTGL + R++E+ VE+ + + + P G PEA Sbjct: 1 MRLSEARFVVIDTETTGL-PPDGRVVELALVEVGLDREPQIVYSALVDP-GCPIPPEASA 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 +H ITD + KP I+ + + +A +AHNA+FD G + Sbjct: 59 VHHITDRDVAGKPRLMQIWPKVMGYIG--DAILVAHNAEFDRGML 101 >gi|77460741|ref|YP_350248.1| ribonuclease T [Pseudomonas fluorescens Pf0-1] gi|123603449|sp|Q3K7J7|RNT_PSEPF RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|77384744|gb|ABA76257.1| ribonuclease T [Pseudomonas fluorescens Pf0-1] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A + + + T+ + P G P AL+ G Sbjct: 32 VVVDVETGGFNSATDALLEIAATTIAMDEKGFVYPDHTYFFRVEPFEGANVEPAALEFTG 91 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ ++ + + IF A + HN+ FD+GF+NA + R++ Sbjct: 92 IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 151 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ I R H A D+ ++++ + Sbjct: 152 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAADIDFDGREAHSARYDTEKTAELFCGI 209 Query: 175 M 175 + Sbjct: 210 V 210 >gi|315290558|gb|EFU49932.1| ribonuclease T [Escherichia coli MS 153-1] Length = 215 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112 I D D+ + S + + F A +AHNA FD F+ A +R Sbjct: 80 I-DPSDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++P P DT ++A + L+ C+ G+ H AL D+ + ++ Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195 Query: 173 KMM 175 +++ Sbjct: 196 EIV 198 >gi|293380779|ref|ZP_06626825.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Lactobacillus crispatus 214-1] gi|290922665|gb|EFD99621.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Lactobacillus crispatus 214-1] Length = 318 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITDE 68 + DIETTGL DRIIE+G V++ + ++ L + NS A KL+GIT+E Sbjct: 35 MLDIETTGLYPYRDRIIELGGVKVRNGQIVDQYTN--LVKFSKNNSVPAFITKLNGITEE 92 Query: 69 -FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K+ EF +F + I +N FD+ F+ Q+ LD + +D L Sbjct: 93 QIVKEGIPAEQAIREFREFIGDD--VIIGYNVNFDLNFLYDLSQKYGLPVLD-NDYVDVL 149 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P R N L +R G I+ H L DS Sbjct: 150 RLARTYYPRERHNRLLDCMQRAG--IAQVEAHHGLQDS 185 >gi|163939458|ref|YP_001644342.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus weihenstephanensis KBAB4] gi|163861655|gb|ABY42714.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus weihenstephanensis KBAB4] Length = 934 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPLFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DENLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|305680841|ref|ZP_07403648.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] gi|305659046|gb|EFM48546.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] Length = 2479 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 9/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG S DRI+E+ V L D + + + P R S A+ HGIT + + Sbjct: 2087 VVDVETTGF-STADRIVELAIVVLDDDGENLYEWSTLINPM-RDISNGAI--HGITAKDV 2142 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129 P+F + + + ++AHNA FDV + +E R+ K IDTL + Sbjct: 2143 AVAPTFDQVADDVAALL--EGKIFVAHNAIFDVRMLKSEFDRVGLKMAGLADGHIDTLRL 2200 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A+ P S L+S GIT + H AL D+ Sbjct: 2201 AQNSLPISSRSLDSCLAFMGIT--NEQAHSALSDA 2233 >gi|225021279|ref|ZP_03710471.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC 33806] gi|224946012|gb|EEG27221.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC 33806] Length = 2493 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 9/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG S DRI+E+ V L D + + + P R S A+ HGIT + + Sbjct: 2101 VVDVETTGF-STADRIVELAIVVLDDDGENLYEWSTLINPM-RDISNGAI--HGITAKDV 2156 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129 P+F + + + ++AHNA FDV + +E R+ K IDTL + Sbjct: 2157 AVAPTFDQVADDVAALL--EGKIFVAHNAIFDVRMLKSEFDRVGLKMAGLADGHIDTLRL 2214 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A+ P S L+S GIT + H AL D+ Sbjct: 2215 AQNSLPISSRSLDSCLAFMGIT--NEQAHSALSDA 2247 >gi|311279254|ref|YP_003941485.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae SCF1] gi|308748449|gb|ADO48201.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae SCF1] Length = 219 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 27/167 (16%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET L ++EI +V+++D TN + P+ R SP+A+ +H IT+E + Sbjct: 4 VIDTETCDLQGG---VVEIASVDIVDGKITN-PMSHLIRPD-RPISPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + + +A ++AHNA FD L +N + I T+ +A Sbjct: 59 ADKPWIEEVVPLY-----QGSAWYVAHNASFD----RRVLPEMNGE------WICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDV 170 RR P + +L K ++++ HR+ + + + LL D+ Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVATPPGLHHHRALYDCYITAALLIDI 150 >gi|229010951|ref|ZP_04168147.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM 2048] gi|229132450|ref|ZP_04261304.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST196] gi|228651156|gb|EEL07137.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST196] gi|228750351|gb|EEM00181.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM 2048] Length = 934 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPLFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + + ID Sbjct: 62 DENLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVHCPK-ID 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|229544028|ref|ZP_04433087.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans 36D1] gi|229325167|gb|EEN90843.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans 36D1] Length = 930 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 11/171 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTG +K DRII+ AV +++ + F F+ P + P +L GI Sbjct: 3 RYVVVDLETTGNSAKKGDRIIQFSAV-VVEGREIKTQFTSFVNPE-KPVPPFISELTGID 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 + L++ P FS I + +++ ++AHN FD+ F+ EL+ P PS +D Sbjct: 61 NGMLEEAPVFSEIAPRIMEIL--EDSIFVAHNVLFDLPFLQQELKAAGFPPFRGPS--LD 116 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +R P+ + L L +++ H H A D+ + + + + M Sbjct: 117 TVEFSRIAFPTLNSYKLGDLAD--SLSLYHERPHRADSDAFVTAKLLLACM 165 >gi|271500216|ref|YP_003333241.1| ribonuclease T [Dickeya dadantii Ech586] gi|270343771|gb|ACZ76536.1| ribonuclease T [Dickeya dadantii Ech586] Length = 226 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 22/201 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L +D S + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDDTLHFHIEPFEGAILRPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + IF +QN A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYDALHDIFKAVRKGIKDQNCNRAIIVAHNATFDHSFLMAAAERCGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C I H AL D+ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAAEIPFDASQAHSALYDTERTAQLFCEL 197 Query: 175 M-----VGGSQINFGFKTNED 190 + +GG + ED Sbjct: 198 VNRWKRMGGWPLAGAVGDTED 218 >gi|51893409|ref|YP_076100.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM 14863] gi|51857098|dbj|BAD41256.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM 14863] Length = 390 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 6/168 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL+ RII+IG V + + + +T++ L + S A++++ + Sbjct: 25 VVIDTETTGLEYDQHRIIQIGVVAIKE-QRIVKTWESKLRLIDGEVSAYAMQVNRLDPSD 83 Query: 70 LKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ + P ++ + + F AHN FD+GF+ AE R + P +D++ Sbjct: 84 MRSEKYPHPKAVLRKLQEEFLRPGVLLGAHNLSFDLGFLQAEFAR-HGLPQWQGNFVDSM 142 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ R P L SL + + + ++ H AL D+ + V + ++ Sbjct: 143 ALGRALLPDLSASLESLARHFRVELT--QHHDALADAVATAHVLLHLL 188 >gi|189499454|ref|YP_001958924.1| Exonuclease RNase T and DNA polymerase III [Chlorobium phaeobacteroides BS1] gi|189494895|gb|ACE03443.1| Exonuclease RNase T and DNA polymerase III [Chlorobium phaeobacteroides BS1] Length = 159 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 6/112 (5%) Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E LKDKP + EF F + N +AHNA FD F+++EL+R N+ Sbjct: 8 ITNEMLKDKPCCEEVMLEFSGFIADHNI--VAHNASFDRRFLDSELKRANRK--YEGSCC 63 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +L ++RR + S N L +L GI + + H AL D+ + + +++ M+ Sbjct: 64 CSLLLSRRVYQDSPNHTLQTLVSHAGIPETG-TFHRALADAEMTAYLWLSMI 114 >gi|284925719|gb|ADC28071.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni IA3902] Length = 256 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 9/145 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 + DIE+TG SK + I+EIGAV++ + + R FQ F+ K P+ + +L GIT E Sbjct: 74 IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPKNITELTGITYEM 128 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ S + + S+F F +++ ++AHN +FD FI+ L L RI T+ Sbjct: 129 VENASSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185 Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154 A+ S + L L + G+ +H Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENTH 210 >gi|302345413|ref|YP_003813766.1| exonuclease [Prevotella melaninogenica ATCC 25845] gi|302149990|gb|ADK96252.1| exonuclease [Prevotella melaninogenica ATCC 25845] Length = 284 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGLD NDRII+I +++ K R +F+ P + E L GI+D Sbjct: 10 IVFDLETTGLDLVNDRIIQISFIKVHPDGKEERE-NIFINPE-KPIPAEVTLLTGISDAD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127 + D P+F + D F ++ +N+ +FDV + E R D R+ID Sbjct: 68 VADAPTFKQKAKDLSDKF--AGCDFAGYNSNRFDVPMLAEEFLRAGVDFDFSKCRLIDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 +I H R +L + K Y Sbjct: 126 NIY---HKMERRNLAAAYKFY 143 >gi|58582091|ref|YP_201107.1| ribonuclease T [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623997|ref|YP_451369.1| ribonuclease T [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576299|ref|YP_001913228.1| ribonuclease T [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426685|gb|AAW75722.1| ribonuclease T [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367937|dbj|BAE69095.1| ribonuclease T [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520751|gb|ACD58696.1| ribonuclease T [Xanthomonas oryzae pv. oryzae PXO99A] Length = 211 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 17/181 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63 +V D+ET G DS ++EI V + +D T L P G + P++L++ Sbjct: 25 PVVVDVETGGFDSNKHALLEIACVPIEMDADGRFFPGDTASAHLVPAPGLEIDPKSLEIT 84 Query: 64 GITDEFL-----KDKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI + ++K + +F+ + Q A + HNA FD+ F+NA + R+ Sbjct: 85 GIVLDHPFRLAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 144 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P + DT+++A + + L + G+ + H A+ D+ + ++ K Sbjct: 145 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 202 Query: 174 M 174 + Sbjct: 203 I 203 >gi|325912570|ref|ZP_08174953.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] gi|325477991|gb|EGC81120.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] Length = 241 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K +DRII+ G + D K +T+ + P K P A++ L GI+++ Sbjct: 13 VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 70 EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126 Query: 129 IARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ P+ D+ S + I H + H A D+ + + + +K++ Sbjct: 127 LAQIAFPTIPSYKLQDITS-----TLHIKHANPHRADSDALVTAKMLLKII 172 >gi|227514420|ref|ZP_03944469.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC 14931] gi|227087286|gb|EEI22598.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC 14931] Length = 189 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 5/113 (4%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI + +KD P+F ++ +FF IAHNA FD + L +P Sbjct: 61 QVHGIHERDVKDAPTFPEVWEHIQEFFTPDKLV-IAHNATFDNSVLKNTLLHFEIEP-PV 118 Query: 121 SRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + +DTL +R+ P+ N LN++C + I + H H AL D+H +++ + Sbjct: 119 YQTLDTLKTSRQLFPAFPNHKLNTICDQLNIDLHHH--HNALDDAHACANILL 169 >gi|121596441|ref|YP_988337.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42] gi|120608521|gb|ABM44261.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42] Length = 218 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 8/148 (5%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ ++ R E+ A+ L++ + +Q + G + P +L GIT+ Sbjct: 8 VIDFETTGMMPAQGARATEV-AIVLMEGGRVVDRYQSLMR-TGVRIPPFITQLTGITNAM 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P +++ E F +A +AHNA FD F AELQ P T+ + Sbjct: 66 VEAAPDAAAVMREAARFVG--DAPMVAHNAAFDRKFWQAELQHAGLA--APHPFACTVLL 121 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRS 156 +RR +P + + L L G+ + R+ Sbjct: 122 SRRVYPDAPSHSLGRLTDHLGLPRAGRA 149 >gi|319938082|ref|ZP_08012482.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1] gi|319806988|gb|EFW03627.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1] Length = 221 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 18/158 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITD 67 I++D+ETTGL +K D IIEIGA+ Y + N F LC G + +++ GIT+ Sbjct: 41 IMYDLETTGLTNK-DHIIEIGAI----YVEDNTIVDSFSALCNPGIFITQRIVEITGITN 95 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNA-KFDVGFINAELQRINKD-PLDPSRII 124 + L DKP + +F ++ N + + N FD + +R + P + R + Sbjct: 96 KMLSDKPPEYDVVKQFVEWCNSKETSLAVGQNINSFDNRMLKVATKRFKLNFPFE--RSL 153 Query: 125 DTLSIA-----RRKHPSSRNDLNSLCKRYGIT-ISHRS 156 DTL +A + K + N + L K YGI ++HR+ Sbjct: 154 DTLKMAINMKLKEKGLVASNQQSDLGKLYGIEYVAHRA 191 >gi|320007769|gb|ADW02619.1| Exonuclease RNase T and DNA polymerase III [Streptomyces flavogriseus ATCC 33331] Length = 241 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 15/156 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68 + FD+ETTG D + DRI+ V L + L P G +A +HGI+ E Sbjct: 9 LAFDLETTGTDVETDRIVTAAVVRLEADGSVSAELTWLLDP-GVAIPEQASAIHGISTER 67 Query: 69 ----FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD----- 119 L + I D + NA++D+ ++ E +R D + Sbjct: 68 AREHGLPAAAAIEEITRAVADGLR-SGTPLVVMNARYDLSLLDRECRRYGVDSVSERLGD 126 Query: 120 -PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 PS +ID L I + K+ + L++LC YG+ + Sbjct: 127 APSPVIDPLVIDKHVDKYRKGKRALHALCAHYGVRL 162 >gi|187251744|ref|YP_001876226.1| DNA polymerase III subunit epsilon [Elusimicrobium minutum Pei191] gi|186971904|gb|ACC98889.1| DNA polymerase III, epsilon subunit [Elusimicrobium minutum Pei191] Length = 201 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 14/173 (8%) Query: 12 FDIETTGLDSKND-RIIEIGAV---ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ETTGL + R+ EI + L+ S+ + + P S E + +HGIT+ Sbjct: 16 LDTETTGLSPYDGARLCEIAVITNGALIAKSE----YGTIINPRCVI-SQEVINIHGITN 70 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E P F I + + + HNA FD+ F+ AE R + + I+DTL Sbjct: 71 EMAAQAPYFEDIAPLLIGLLTD--SVIVCHNADFDIPFLAAEFARCGLR-MPQTVILDTL 127 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 AR+ +N+L + G +S+ H A+ D+ + V+ + Q Sbjct: 128 KFARKNGNFKKNNLGFIVSELG--LSNEGWHRAMADAKMTEKVFYHFLAAFKQ 178 >gi|56413202|ref|YP_150277.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362128|ref|YP_002141765.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127459|gb|AAV76965.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093605|emb|CAR59069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 232 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RLITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 +RR P + +L K +++ H AL D ++ + + I +M Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|323187079|gb|EFZ72395.1| ribonuclease T [Escherichia coli RN587/1] Length = 215 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112 I D D+ + S + + F A +AHNA FD F+ A +R Sbjct: 80 I-DPNDPDRGAISE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++P P DT ++A + L+ C+ G+ H AL D+ + ++ Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195 Query: 173 KMM 175 +++ Sbjct: 196 EIV 198 >gi|86142317|ref|ZP_01060827.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella blandensis MED217] gi|85831069|gb|EAQ49526.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella blandensis MED217] Length = 257 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 3/105 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG++ DRI+EI +++L K + +L PE +HGI DE + Sbjct: 12 FDLETTGINVAKDRIVEISVLKVLPNGKEEK--HTWLVNPTIPIPPETTAVHGIKDEDVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 DKP+F + +E + + + N +FD+ + E+ R D Sbjct: 70 DKPTFKELANEIHNLIKDSDLAGFNSN-RFDIPLLAEEMLRAEVD 113 >gi|330001239|ref|ZP_08303928.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3] gi|328537753|gb|EGF63955.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3] Length = 219 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 29/168 (17%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D TN L R SP+A+ +H IT+E + Sbjct: 4 VIDTETCGLQGG---IVEIASVDIVDGQITNPMSH--LVRPDRPISPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP I + + W +AHNA FD +R+ P I T+ + Sbjct: 59 ADKPWIEEIIPHY------HGSPWYVAHNASFD--------RRVL--PEMHGEGICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDV 170 ARR P + L K + ++ HR+ + + + LL D+ Sbjct: 103 ARRLWPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLLDI 150 >gi|325963971|ref|YP_004241877.1| DNA polymerase III subunit epsilon [Arthrobacter phenanthrenivorans Sphe3] gi|323470058|gb|ADX73743.1| DNA polymerase III, epsilon subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 236 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 14/190 (7%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N + + FD+ETTG +S+ RI+ +V ++D+ +L G + EA +HG Sbjct: 5 NTLPRAAFDLETTGRNSRAARIV-TASVTVVDHQAEVMREHEWLADPGVEIPTEASDVHG 63 Query: 65 ITDEFLK--DKPSFS---SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 IT E + +P+ + + + F+ N IA NA +D + AE R L Sbjct: 64 ITTEQARREGRPAHEVTREVAAALQELFD-SNIPVIAFNASYDFTVLAAESARYGIPQLT 122 Query: 120 PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDV---YI 172 ++D + ++ ++ + L +LC+ YG+ + +H S AL +L + + Sbjct: 123 RFPVLDPYIMNKQVDRYRKGKRTLTALCEEYGVVLDNAHTSAADALATLRVLDAMAGKFP 182 Query: 173 KMMVGGSQIN 182 K+ + SQ++ Sbjct: 183 KLSMPASQLH 192 >gi|261340232|ref|ZP_05968090.1| exodeoxyribonuclease 10 [Enterobacter cancerogenus ATCC 35316] gi|288317749|gb|EFC56687.1| exodeoxyribonuclease 10 [Enterobacter cancerogenus ATCC 35316] Length = 220 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET L I+E+ +V+++D N L R SP+A+ +H IT+ + Sbjct: 4 VIDTETCDLQGG---IVEVASVDVVDGQIVNPMSH--LVRPDRPISPQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + S + + W +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEEVISHY------HGSPWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P + +L K +++ H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKSRKLSVQTPEGLHHHRALYDCYITAALLIDIM 151 >gi|184154853|ref|YP_001843193.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum IFO 3956] gi|260663117|ref|ZP_05864009.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum 28-3-CHN] gi|183226197|dbj|BAG26713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum IFO 3956] gi|260552309|gb|EEX25360.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum 28-3-CHN] Length = 179 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 5/113 (4%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI + +KD P+F ++ +FF IAHNA FD + L +P Sbjct: 51 QVHGIHERDVKDAPTFPEVWEHIQEFFTPDKLV-IAHNATFDNSVLKNTLLHFEIEP-PV 108 Query: 121 SRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + +DTL +R+ P+ N LN++C + I + H H AL D+H +++ + Sbjct: 109 YQTLDTLKTSRQLFPAFPNHKLNTICDQLNIDLHHH--HNALDDAHACANILL 159 >gi|269966452|ref|ZP_06180536.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] gi|269828909|gb|EEZ83159.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] Length = 248 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 19/190 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+S+ D I+ IG V +D + N + + PN R+ + E++ +HGITD Sbjct: 59 VSVDFETTGLNSEEDVILTIGLVPFTIDRVQCNGSAHWVVNPN-RELNHESVIIHGITDS 117 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127 +K+ P S I E D + + + H + F NA L I + P ++DTL Sbjct: 118 EVKNAPQLSQILGEILDALSGKVV--LVHYKNIERQFFNNALLNSIGEGIQFP--VVDTL 173 Query: 128 ----SIARRKHPSSRNDLNSL-CKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGG 178 +I RR+ R +N L K+ G + + + R ++G A H L+D + Sbjct: 174 DIEYAIQRRE---CRGFINKLKGKKPGSVRLGYARERYGLPAYQPHHALTDALATAELFQ 230 Query: 179 SQINFGFKTN 188 +Q+ + F N Sbjct: 231 AQLQYHFNRN 240 >gi|27367317|ref|NP_762844.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6] gi|27358886|gb|AAO07834.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6] Length = 245 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 4/127 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD+K+D+I+ IG V+L + + L +G E+ +++G+T + Sbjct: 54 LALDFETTGLDAKHDKILSIGMVDLTLEGINLSSAEEILLNHGAYIKAESARINGLTPQA 113 Query: 70 LKDKPSF---SSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 L+ S S+ F Q +AH+A + GF+ A Q+ + P +D Sbjct: 114 LEQGCSLEQGCSLEQGMMRLFERAQGKVLLAHSAIIEQGFLQAFAQQHFQLAKLPCHFVD 173 Query: 126 TLSIARR 132 TL I +R Sbjct: 174 TLQIEKR 180 >gi|65318908|ref|ZP_00391867.1| COG1199: Rad3-related DNA helicases [Bacillus anthracis str. A2012] Length = 934 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ E ++ + + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEEXRQAGYTEIHCPK-VD 118 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|323462903|pdb|3NGY|A Chain A, Crystal Structure Of Rnase T (E92g Mutant) gi|323462904|pdb|3NGY|B Chain B, Crystal Structure Of Rnase T (E92g Mutant) gi|323462905|pdb|3NGY|C Chain C, Crystal Structure Of Rnase T (E92g Mutant) gi|323462906|pdb|3NGY|D Chain D, Crystal Structure Of Rnase T (E92g Mutant) gi|323462908|pdb|3NGZ|A Chain A, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Gc) With One Mg In The Active Site gi|323462909|pdb|3NGZ|B Chain B, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Gc) With One Mg In The Active Site Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 40 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 99 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112 I D D+ + S + + F A +AHNA FD F+ A +R Sbjct: 100 I-DPNDPDRGAVSG-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 157 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++P P DT ++A + L+ C+ G+ H AL D+ + ++ Sbjct: 158 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 215 Query: 173 KMM 175 +++ Sbjct: 216 EIV 218 >gi|320159156|ref|YP_004191534.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O] gi|319934468|gb|ADV89331.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O] Length = 238 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD+K+D+I+ IG V+L + + L +G E+ +++G+T + Sbjct: 53 LALDFETTGLDAKHDKILSIGMVDLTLEGINLSSAEEILLNHGAYIKAESARINGLTPQA 112 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ S F Q +AH+A + GF+ Q+ + P +DTL I Sbjct: 113 LEQGCSLEQGMMRL--FERAQGKVLLAHSAIIEQGFLQTFAQQHFQLAKLPCHFVDTLQI 170 Query: 130 ARR 132 +R Sbjct: 171 EKR 173 >gi|56460902|ref|YP_156183.1| ribonuclease T [Idiomarina loihiensis L2TR] gi|56179912|gb|AAV82634.1| RNase T, degrades tRNA [Idiomarina loihiensis L2TR] Length = 215 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCPNGRKNSPEA----- 59 +V D+ET G ++K D ++EI AV LLD+ K + + P N +A Sbjct: 19 VVVDVETAGFNAKTDALLEIAAV-LLDFDDDGILKPVDSVHYHVKPFEGANIEQAAIDFN 77 Query: 60 -----LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 L G +E + F I + Q + + HN+ FD GF+ A +R N Sbjct: 78 GIDPHCPLRGAVEEGEALRELFKPI-RKAQKAAGCQRSVLVGHNSNFDHGFMMAAAERAN 136 Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++P P DT S+A + L C+ GI + H AL D+ +++Y Sbjct: 137 LKRNPFHPFVSFDTTSLAAMT--LGQTVLIKACQAAGIEFDSKQAHSALYDTERTAELYC 194 Query: 173 KMM 175 M+ Sbjct: 195 WMI 197 >gi|332343370|gb|AEE56704.1| ribonuclease T [Escherichia coli UMNK88] Length = 215 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112 I D D+ + S + + F A +AHNA FD F+ A +R Sbjct: 80 I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++P P DT ++A + L+ C+ G+ H AL D+ + ++ Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195 Query: 173 KMM 175 +++ Sbjct: 196 EIV 198 >gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] Length = 329 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 12/163 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRI+ + + + + P + P + +HG+T E L Sbjct: 23 VVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNP---ERDPGPVWIHGLTSEVL 78 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129 + P F I E + + +AHNA FD + E R P+ R + T+++ Sbjct: 79 EGAPLFPEIAEELSRRLDGRVL--VAHNAVFDWSMLAREYARAGITAPV--RRRLCTIAL 134 Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 A+ P + L +L +G + R H AL D+ +L++ + Sbjct: 135 AKELALPLPNHKLETLAAHFG--VEQRRAHHALDDARVLAEAF 175 >gi|300904499|ref|ZP_07122340.1| ribonuclease T [Escherichia coli MS 84-1] gi|300918020|ref|ZP_07134642.1| ribonuclease T [Escherichia coli MS 115-1] gi|301303165|ref|ZP_07209291.1| ribonuclease T [Escherichia coli MS 124-1] gi|300403565|gb|EFJ87103.1| ribonuclease T [Escherichia coli MS 84-1] gi|300414762|gb|EFJ98072.1| ribonuclease T [Escherichia coli MS 115-1] gi|300841574|gb|EFK69334.1| ribonuclease T [Escherichia coli MS 124-1] gi|315257547|gb|EFU37515.1| ribonuclease T [Escherichia coli MS 85-1] Length = 215 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112 I D D+ + S + + F A +AHNA FD F+ A +R Sbjct: 80 I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++P P DT ++A + L+ C+ G+ H AL D+ + ++ Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195 Query: 173 KMM 175 +++ Sbjct: 196 EIV 198 >gi|221316927|ref|YP_002533071.1| bacteriophage 186 Orf81-like protein [Bacillus cereus Q1] gi|221243259|gb|ACM15967.1| bacteriophage 186 Orf81-like protein [Bacillus cereus Q1] Length = 288 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 8/116 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I KNK I+ D ETTGL ++ I+EI A++L N F+ P + ++ K Sbjct: 120 IEKNKDNYIILDTETTGLGLGHE-IVEIAAIDLYG----NTLLNTFVTPTIPIPA-DSTK 173 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 +HGITD+ +KD PS+ + + Q + +NA FD+ I+ + N P Sbjct: 174 IHGITDDMVKDAPSWEETYMKLLTI--SQGKTILIYNAAFDIPKISYTCEVHNIAP 227 >gi|323345727|ref|ZP_08085950.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis ATCC 33269] gi|323093841|gb|EFZ36419.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis ATCC 33269] Length = 284 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGLD ND II+I +++ K R +F+ P G E L GI ++ Sbjct: 10 IVFDLETTGLDLVNDHIIQISYIKVYPDGKEERE-NIFVNP-GISIPEEVTLLTGIGNDD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDTL 127 +KD P+F I S + F + ++ +N+ FD+ + E R D R+ID Sbjct: 68 VKDAPTFKEIASSLCEKF--KGCDFAGYNSNHFDIPMLAEEFLRAGIDFDFAHCRLIDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 +I H + +L + K Y Sbjct: 126 TIF---HKMEKRNLAAAYKFY 143 >gi|126651265|ref|ZP_01723475.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. B14905] gi|126592103|gb|EAZ86169.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. B14905] Length = 914 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 15/171 (8%) Query: 12 FDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69 D+ETTG N DR+I+I V + D+ + RT+ F+ P K P ++ L IT+E Sbjct: 1 MDLETTGHSPANGDRMIQIAIVIMKDW-EIERTYTKFINPG--KAIPSFIQDLTHITNED 57 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +KD S F E D+ E A+ ++AHNA FD+ F+ AE +R P + +DT+ Sbjct: 58 VKD----SYPFEEHADYIYELLADCVFVAHNADFDLSFLQAEFKRAGL-PKWQGKKMDTV 112 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKMM 175 +A+ P S L L I + +HR+ A + L + +++ Sbjct: 113 ELAKILFPMSLGFKLGDLAADLNIELANAHRADDDARATAELFKCCWKELL 163 >gi|139439869|ref|ZP_01773234.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC 25986] gi|133774797|gb|EBA38617.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC 25986] Length = 964 Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 10/149 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D ETTGL +++ +IEI A L +R F F+ P + E +L IT+ Sbjct: 39 IVLDTETTGLSVQDNELIEISAARLSGREVVDR-FDTFVHPK-QLIPAEITELTSITNAD 96 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D PS + DF IAHNA FD FI + +N + ID+L++ Sbjct: 97 VADAPSAVEAVAALADFVG--GCPVIAHNATFDRSFIESVKGGVNVSDI----WIDSLAL 150 Query: 130 ARRKHPS-SRNDLNSLCKRYGI-TISHRS 156 +R P + + L+ + +G ++SHR+ Sbjct: 151 SRIALPRLASHKLSFMADLFGCDSVSHRA 179 >gi|291527626|emb|CBK93212.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium rectale M104/1] Length = 260 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 21/173 (12%) Query: 11 VFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHG 64 V D+E TGL +KND+IIEIGA E++D T + P +++ P+ ++ L G Sbjct: 27 VIDLEMTGLSAKNDKIIEIGAARVRGGEIVD------TISTLVNP--KQHIPQRVQELTG 78 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD +++ DF + + N FD F+ +N Sbjct: 79 ITDSDVENAADMDVAVDNLLDFIGDDII--LGQNVTFDYSFLKQ--WAVNHKRTLSLNAY 134 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 DTL IAR+ P+ ++ L LC+ + +S + H AL D+ ++ K++ Sbjct: 135 DTLKIARKCLPAEQSKKLEDLCEYFD--VSRENAHRALDDAIETKQIFEKLLA 185 >gi|108563906|ref|YP_628222.1| DNA polymerase III subunit epsilon [Helicobacter pylori HPAG1] gi|107837679|gb|ABF85548.1| DNA polymerase III epsilon subunit [Helicobacter pylori HPAG1] Length = 323 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 17/214 (7%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GIT E Sbjct: 113 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 168 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 169 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 225 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFGFKT 187 R S R L+ L +GI +SHR+ AL L + + + + F Sbjct: 226 RAILSMRYSLSFLKELLGFGIEVSHRAYADALASYKLFEICLLNLPSYIKTTMDLIDFSK 285 Query: 188 NEDRFFK-----EEKKTVPNISLLKRDKPLFTRI 216 + K ++T P SL +R K LF I Sbjct: 286 CANTLIKRPPRARHQETPPPFSLFERTKGLFNII 319 >gi|15802066|ref|NP_288088.1| ribonuclease T [Escherichia coli O157:H7 EDL933] gi|15831615|ref|NP_310388.1| ribonuclease T [Escherichia coli O157:H7 str. Sakai] gi|24113043|ref|NP_707553.1| ribonuclease T [Shigella flexneri 2a str. 301] gi|26247900|ref|NP_753940.1| ribonuclease T [Escherichia coli CFT073] gi|30063168|ref|NP_837339.1| ribonuclease T [Shigella flexneri 2a str. 2457T] gi|74312020|ref|YP_310439.1| ribonuclease T [Shigella sonnei Ss046] gi|82777129|ref|YP_403478.1| ribonuclease T [Shigella dysenteriae Sd197] gi|91210866|ref|YP_540852.1| ribonuclease T [Escherichia coli UTI89] gi|110641774|ref|YP_669504.1| ribonuclease T [Escherichia coli 536] gi|117623836|ref|YP_852749.1| ribonuclease T [Escherichia coli APEC O1] gi|157159164|ref|YP_001462944.1| ribonuclease T [Escherichia coli E24377A] gi|157161115|ref|YP_001458433.1| ribonuclease T [Escherichia coli HS] gi|168752335|ref|ZP_02777357.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113] gi|168759015|ref|ZP_02784022.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401] gi|168765301|ref|ZP_02790308.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501] gi|168771196|ref|ZP_02796203.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486] gi|168775884|ref|ZP_02800891.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196] gi|168783923|ref|ZP_02808930.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076] gi|168789491|ref|ZP_02814498.1| ribonuclease T [Escherichia coli O157:H7 str. EC869] gi|168802776|ref|ZP_02827783.1| ribonuclease T [Escherichia coli O157:H7 str. EC508] gi|170019996|ref|YP_001724950.1| ribonuclease T [Escherichia coli ATCC 8739] gi|170681755|ref|YP_001743601.1| ribonuclease T [Escherichia coli SMS-3-5] gi|187731741|ref|YP_001880408.1| ribonuclease T [Shigella boydii CDC 3083-94] gi|188496363|ref|ZP_03003633.1| ribonuclease T [Escherichia coli 53638] gi|191165895|ref|ZP_03027732.1| ribonuclease T [Escherichia coli B7A] gi|191173445|ref|ZP_03034973.1| ribonuclease T [Escherichia coli F11] gi|193064949|ref|ZP_03046025.1| ribonuclease T [Escherichia coli E22] gi|193070264|ref|ZP_03051208.1| ribonuclease T [Escherichia coli E110019] gi|194426088|ref|ZP_03058644.1| ribonuclease T [Escherichia coli B171] gi|194436646|ref|ZP_03068747.1| ribonuclease T [Escherichia coli 101-1] gi|195940215|ref|ZP_03085597.1| ribonuclease T [Escherichia coli O157:H7 str. EC4024] gi|208810464|ref|ZP_03252340.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206] gi|208816877|ref|ZP_03257997.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045] gi|208820253|ref|ZP_03260573.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042] gi|209396384|ref|YP_002270721.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115] gi|209918966|ref|YP_002293050.1| ribonuclease T [Escherichia coli SE11] gi|217328725|ref|ZP_03444806.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588] gi|218554220|ref|YP_002387133.1| ribonuclease T [Escherichia coli IAI1] gi|218558523|ref|YP_002391436.1| ribonuclease T [Escherichia coli S88] gi|218689598|ref|YP_002397810.1| ribonuclease T [Escherichia coli ED1a] gi|218695215|ref|YP_002402882.1| ribonuclease T [Escherichia coli 55989] gi|218699780|ref|YP_002407409.1| ribonuclease T [Escherichia coli IAI39] gi|218705152|ref|YP_002412671.1| ribonuclease T [Escherichia coli UMN026] gi|227885930|ref|ZP_04003735.1| exoribonuclease T [Escherichia coli 83972] gi|237705597|ref|ZP_04536078.1| ribonuclease T [Escherichia sp. 3_2_53FAA] gi|253773389|ref|YP_003036220.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161714|ref|YP_003044822.1| ribonuclease T [Escherichia coli B str. REL606] gi|254793269|ref|YP_003078106.1| ribonuclease T [Escherichia coli O157:H7 str. TW14359] gi|256018153|ref|ZP_05432018.1| ribonuclease T [Shigella sp. D9] gi|260843958|ref|YP_003221736.1| ribonuclease T [Escherichia coli O103:H2 str. 12009] gi|260855477|ref|YP_003229368.1| ribonuclease T [Escherichia coli O26:H11 str. 11368] gi|260868144|ref|YP_003234546.1| ribonuclease T [Escherichia coli O111:H- str. 11128] gi|261227902|ref|ZP_05942183.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. FRIK2000] gi|261258364|ref|ZP_05950897.1| ribonuclease T [Escherichia coli O157:H7 str. FRIK966] gi|291282784|ref|YP_003499602.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615] gi|293405152|ref|ZP_06649144.1| ribonuclease T [Escherichia coli FVEC1412] gi|293409965|ref|ZP_06653541.1| ribonuclease T [Escherichia coli B354] gi|293414968|ref|ZP_06657611.1| ribonuclease T [Escherichia coli B185] gi|293446028|ref|ZP_06662450.1| ribonuclease T [Escherichia coli B088] gi|297520520|ref|ZP_06938906.1| ribonuclease T [Escherichia coli OP50] gi|298380798|ref|ZP_06990397.1| ribonuclease T [Escherichia coli FVEC1302] gi|300819590|ref|ZP_07099783.1| ribonuclease T [Escherichia coli MS 107-1] gi|300821475|ref|ZP_07101622.1| ribonuclease T [Escherichia coli MS 119-7] gi|300901538|ref|ZP_07119609.1| ribonuclease T [Escherichia coli MS 198-1] gi|300924684|ref|ZP_07140632.1| ribonuclease T [Escherichia coli MS 182-1] gi|300930881|ref|ZP_07146250.1| ribonuclease T [Escherichia coli MS 187-1] gi|300939029|ref|ZP_07153724.1| ribonuclease T [Escherichia coli MS 21-1] gi|300987874|ref|ZP_07178425.1| ribonuclease T [Escherichia coli MS 200-1] gi|300995389|ref|ZP_07181069.1| ribonuclease T [Escherichia coli MS 45-1] gi|301026836|ref|ZP_07190236.1| ribonuclease T [Escherichia coli MS 69-1] gi|301051019|ref|ZP_07197863.1| ribonuclease T [Escherichia coli MS 185-1] gi|301326587|ref|ZP_07219926.1| ribonuclease T [Escherichia coli MS 78-1] gi|306813383|ref|ZP_07447573.1| ribonuclease T [Escherichia coli NC101] gi|307310775|ref|ZP_07590421.1| ribonuclease T [Escherichia coli W] gi|309788378|ref|ZP_07682982.1| ribonuclease T [Shigella dysenteriae 1617] gi|309793418|ref|ZP_07687845.1| ribonuclease T [Escherichia coli MS 145-7] gi|312969674|ref|ZP_07783857.1| ribonuclease T [Escherichia coli 1827-70] gi|331653048|ref|ZP_08354053.1| ribonuclease T [Escherichia coli M718] gi|331663127|ref|ZP_08364037.1| ribonuclease T [Escherichia coli TA143] gi|331668331|ref|ZP_08369179.1| ribonuclease T [Escherichia coli TA271] gi|332279200|ref|ZP_08391613.1| ribonuclease T [Shigella sp. D9] gi|54039257|sp|P66682|RNT_ECO57 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|54039258|sp|P66683|RNT_SHIFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|54042001|sp|P66681|RNT_ECOL6 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|122423656|sp|Q1RBE3|RNT_ECOUT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123148046|sp|Q0THH6|RNT_ECOL5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123562458|sp|Q32FB8|RNT_SHIDS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123617229|sp|Q3Z208|RNT_SHISS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|166228563|sp|A1ABJ5|RNT_ECOK1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|166991088|sp|A7ZMB5|RNT_ECO24 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|166991089|sp|A8A0J6|RNT_ECOHS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|12515647|gb|AAG56641.1|AE005388_6 RNase T, degrades tRNA [Escherichia coli O157:H7 str. EDL933] gi|26108303|gb|AAN80505.1|AE016761_80 Ribonuclease T [Escherichia coli CFT073] gi|13361828|dbj|BAB35784.1| RNase T [Escherichia coli O157:H7 str. Sakai] gi|24052011|gb|AAN43260.1| RNase T [Shigella flexneri 2a str. 301] gi|30041420|gb|AAP17148.1| RNase T [Shigella flexneri 2a str. 2457T] gi|73855497|gb|AAZ88204.1| RNase T [Shigella sonnei Ss046] gi|81241277|gb|ABB61987.1| RNase T [Shigella dysenteriae Sd197] gi|91072440|gb|ABE07321.1| RNase T, degrades tRNA [Escherichia coli UTI89] gi|110343366|gb|ABG69603.1| ribonuclease T [Escherichia coli 536] gi|115512960|gb|ABJ01035.1| RNase T [Escherichia coli APEC O1] gi|157066795|gb|ABV06050.1| ribonuclease T [Escherichia coli HS] gi|157081194|gb|ABV20902.1| ribonuclease T [Escherichia coli E24377A] gi|169754924|gb|ACA77623.1| ribonuclease T [Escherichia coli ATCC 8739] gi|170519473|gb|ACB17651.1| ribonuclease T [Escherichia coli SMS-3-5] gi|187428733|gb|ACD08007.1| ribonuclease T [Shigella boydii CDC 3083-94] gi|187768648|gb|EDU32492.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196] gi|188013802|gb|EDU51924.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113] gi|188491562|gb|EDU66665.1| ribonuclease T [Escherichia coli 53638] gi|188998818|gb|EDU67804.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076] gi|189354299|gb|EDU72718.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401] gi|189360025|gb|EDU78444.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486] gi|189364907|gb|EDU83323.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501] gi|189370964|gb|EDU89380.1| ribonuclease T [Escherichia coli O157:H7 str. EC869] gi|189375329|gb|EDU93745.1| ribonuclease T [Escherichia coli O157:H7 str. EC508] gi|190904026|gb|EDV63738.1| ribonuclease T [Escherichia coli B7A] gi|190906287|gb|EDV65898.1| ribonuclease T [Escherichia coli F11] gi|192927436|gb|EDV82054.1| ribonuclease T [Escherichia coli E22] gi|192956445|gb|EDV86904.1| ribonuclease T [Escherichia coli E110019] gi|194416143|gb|EDX32409.1| ribonuclease T [Escherichia coli B171] gi|194424678|gb|EDX40664.1| ribonuclease T [Escherichia coli 101-1] gi|208724980|gb|EDZ74687.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206] gi|208731220|gb|EDZ79909.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045] gi|208740376|gb|EDZ88058.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042] gi|209157784|gb|ACI35217.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115] gi|209769438|gb|ACI83031.1| RNase T [Escherichia coli] gi|209769440|gb|ACI83032.1| RNase T [Escherichia coli] gi|209769442|gb|ACI83033.1| RNase T [Escherichia coli] gi|209769444|gb|ACI83034.1| RNase T [Escherichia coli] gi|209769446|gb|ACI83035.1| RNase T [Escherichia coli] gi|209912225|dbj|BAG77299.1| ribonuclease T [Escherichia coli SE11] gi|217318072|gb|EEC26499.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588] gi|218351947|emb|CAU97679.1| ribonuclease T (RNase T) [Escherichia coli 55989] gi|218360988|emb|CAQ98561.1| ribonuclease T (RNase T) [Escherichia coli IAI1] gi|218365292|emb|CAR03013.1| ribonuclease T (RNase T) [Escherichia coli S88] gi|218369766|emb|CAR17537.1| ribonuclease T (RNase T) [Escherichia coli IAI39] gi|218427162|emb|CAR08045.2| ribonuclease T (RNase T) [Escherichia coli ED1a] gi|218432249|emb|CAR13139.1| ribonuclease T (RNase T) [Escherichia coli UMN026] gi|222033411|emb|CAP76152.1| ribonuclease T [Escherichia coli LF82] gi|226900354|gb|EEH86613.1| ribonuclease T [Escherichia sp. 3_2_53FAA] gi|227837109|gb|EEJ47575.1| exoribonuclease T [Escherichia coli 83972] gi|242377382|emb|CAQ32129.1| RNase T [Escherichia coli BL21(DE3)] gi|253324433|gb|ACT29035.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973615|gb|ACT39286.1| ribonuclease T [Escherichia coli B str. REL606] gi|253977810|gb|ACT43480.1| ribonuclease T [Escherichia coli BL21(DE3)] gi|254592669|gb|ACT72030.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. TW14359] gi|257754126|dbj|BAI25628.1| ribonuclease T [Escherichia coli O26:H11 str. 11368] gi|257759105|dbj|BAI30602.1| ribonuclease T [Escherichia coli O103:H2 str. 12009] gi|257764500|dbj|BAI35995.1| ribonuclease T [Escherichia coli O111:H- str. 11128] gi|281601087|gb|ADA74071.1| Ribonuclease T [Shigella flexneri 2002017] gi|284921576|emb|CBG34648.1| ribonuclease T [Escherichia coli 042] gi|290762657|gb|ADD56618.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615] gi|291322858|gb|EFE62286.1| ribonuclease T [Escherichia coli B088] gi|291427360|gb|EFF00387.1| ribonuclease T [Escherichia coli FVEC1412] gi|291432616|gb|EFF05595.1| ribonuclease T [Escherichia coli B185] gi|291470433|gb|EFF12917.1| ribonuclease T [Escherichia coli B354] gi|294491548|gb|ADE90304.1| ribonuclease T [Escherichia coli IHE3034] gi|298278240|gb|EFI19754.1| ribonuclease T [Escherichia coli FVEC1302] gi|300297314|gb|EFJ53699.1| ribonuclease T [Escherichia coli MS 185-1] gi|300306022|gb|EFJ60542.1| ribonuclease T [Escherichia coli MS 200-1] gi|300355068|gb|EFJ70938.1| ribonuclease T [Escherichia coli MS 198-1] gi|300395276|gb|EFJ78814.1| ribonuclease T [Escherichia coli MS 69-1] gi|300406150|gb|EFJ89688.1| ribonuclease T [Escherichia coli MS 45-1] gi|300419111|gb|EFK02422.1| ribonuclease T [Escherichia coli MS 182-1] gi|300456057|gb|EFK19550.1| ribonuclease T [Escherichia coli MS 21-1] gi|300461297|gb|EFK24790.1| ribonuclease T [Escherichia coli MS 187-1] gi|300525978|gb|EFK47047.1| ribonuclease T [Escherichia coli MS 119-7] gi|300527838|gb|EFK48900.1| ribonuclease T [Escherichia coli MS 107-1] gi|300846749|gb|EFK74509.1| ribonuclease T [Escherichia coli MS 78-1] gi|305853128|gb|EFM53568.1| ribonuclease T [Escherichia coli NC101] gi|306908953|gb|EFN39449.1| ribonuclease T [Escherichia coli W] gi|307553675|gb|ADN46450.1| ribonuclease T [Escherichia coli ABU 83972] gi|307626861|gb|ADN71165.1| ribonuclease T [Escherichia coli UM146] gi|308123005|gb|EFO60267.1| ribonuclease T [Escherichia coli MS 145-7] gi|308923760|gb|EFP69263.1| ribonuclease T [Shigella dysenteriae 1617] gi|310337959|gb|EFQ03048.1| ribonuclease T [Escherichia coli 1827-70] gi|312946253|gb|ADR27080.1| ribonuclease T [Escherichia coli O83:H1 str. NRG 857C] gi|313648931|gb|EFS13368.1| ribonuclease T [Shigella flexneri 2a str. 2457T] gi|315060959|gb|ADT75286.1| ribonuclease T (RNase T) [Escherichia coli W] gi|315286357|gb|EFU45793.1| ribonuclease T [Escherichia coli MS 110-3] gi|320174139|gb|EFW49304.1| Ribonuclease T [Shigella dysenteriae CDC 74-1112] gi|320181325|gb|EFW56244.1| Ribonuclease T [Shigella boydii ATCC 9905] gi|320188340|gb|EFW63002.1| Ribonuclease T [Escherichia coli O157:H7 str. EC1212] gi|320195450|gb|EFW70075.1| Ribonuclease T [Escherichia coli WV_060327] gi|320197835|gb|EFW72443.1| Ribonuclease T [Escherichia coli EC4100B] gi|320642007|gb|EFX11371.1| ribonuclease T [Escherichia coli O157:H7 str. G5101] gi|320647324|gb|EFX16132.1| ribonuclease T [Escherichia coli O157:H- str. 493-89] gi|320652618|gb|EFX20887.1| ribonuclease T [Escherichia coli O157:H- str. H 2687] gi|320653004|gb|EFX21200.1| ribonuclease T [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658687|gb|EFX26364.1| ribonuclease T [Escherichia coli O55:H7 str. USDA 5905] gi|323152841|gb|EFZ39111.1| ribonuclease T [Escherichia coli EPECa14] gi|323169213|gb|EFZ54889.1| ribonuclease T [Shigella sonnei 53G] gi|323169961|gb|EFZ55617.1| ribonuclease T [Escherichia coli LT-68] gi|323180968|gb|EFZ66506.1| ribonuclease T [Escherichia coli 1180] gi|323186075|gb|EFZ71431.1| ribonuclease T [Escherichia coli 1357] gi|323378470|gb|ADX50738.1| ribonuclease T [Escherichia coli KO11] gi|323948052|gb|EGB44044.1| ribonuclease T [Escherichia coli H120] gi|323952162|gb|EGB48035.1| ribonuclease T [Escherichia coli H252] gi|323956663|gb|EGB52400.1| ribonuclease T [Escherichia coli H263] gi|323962144|gb|EGB57739.1| ribonuclease T [Escherichia coli H489] gi|323968420|gb|EGB63826.1| ribonuclease T [Escherichia coli M863] gi|323973968|gb|EGB69140.1| ribonuclease T [Escherichia coli TA007] gi|323978209|gb|EGB73295.1| ribonuclease T [Escherichia coli TW10509] gi|324007017|gb|EGB76236.1| ribonuclease T [Escherichia coli MS 57-2] gi|324011423|gb|EGB80642.1| ribonuclease T [Escherichia coli MS 60-1] gi|324016541|gb|EGB85760.1| ribonuclease T [Escherichia coli MS 117-3] gi|324119138|gb|EGC13026.1| ribonuclease T [Escherichia coli E1167] gi|326342019|gb|EGD65800.1| Ribonuclease T [Escherichia coli O157:H7 str. 1044] gi|326343571|gb|EGD67333.1| Ribonuclease T [Escherichia coli O157:H7 str. 1125] gi|327252769|gb|EGE64423.1| ribonuclease T [Escherichia coli STEC_7v] gi|331049146|gb|EGI21218.1| ribonuclease T [Escherichia coli M718] gi|331058926|gb|EGI30903.1| ribonuclease T [Escherichia coli TA143] gi|331063525|gb|EGI35436.1| ribonuclease T [Escherichia coli TA271] gi|332101552|gb|EGJ04898.1| ribonuclease T [Shigella sp. D9] gi|332756966|gb|EGJ87309.1| ribonuclease T [Shigella flexneri 4343-70] gi|332758172|gb|EGJ88497.1| ribonuclease T [Shigella flexneri 2747-71] gi|332758486|gb|EGJ88807.1| ribonuclease T [Shigella flexneri K-671] gi|332767056|gb|EGJ97255.1| ribonuclease T [Shigella flexneri 2930-71] gi|333004001|gb|EGK23536.1| ribonuclease T [Shigella flexneri K-218] gi|333005308|gb|EGK24828.1| ribonuclease T [Shigella flexneri VA-6] gi|333005888|gb|EGK25404.1| ribonuclease T [Shigella flexneri K-272] gi|333017888|gb|EGK37193.1| ribonuclease T [Shigella flexneri K-304] gi|333018868|gb|EGK38161.1| ribonuclease T [Shigella flexneri K-227] Length = 215 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112 I D D+ + S + + F A +AHNA FD F+ A +R Sbjct: 80 I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++P P DT ++A + L+ C+ G+ H AL D+ + ++ Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195 Query: 173 KMM 175 +++ Sbjct: 196 EIV 198 >gi|332090790|gb|EGI95882.1| ribonuclease T [Shigella boydii 5216-82] Length = 215 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112 I D D+ + S + + F A +AHNA FD F+ A +R Sbjct: 80 I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++P P DT ++A + L+ C+ G+ H AL D+ + ++ Sbjct: 138 LKRNPFHPFATFDTTALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195 Query: 173 KMM 175 +++ Sbjct: 196 EIV 198 >gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] Length = 331 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 12/163 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRI+ + + + + P + P + +HG+T E L Sbjct: 21 VVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNP---ERDPGPVWIHGLTSEVL 76 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSI 129 + P F I E + + +AHNA FD + E R P+ R + T+++ Sbjct: 77 EGAPLFPEIAEELSRRLDGRVL--VAHNAVFDWSMLAREYARAGITAPV--RRRLCTIAL 132 Query: 130 ARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 A+ P + L +L +G + R H AL D+ +L++ + Sbjct: 133 AKELALPLPNHKLETLAAHFG--VEQRRAHHALDDARVLAEAF 173 >gi|237752604|ref|ZP_04583084.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC BAA-430] gi|229376093|gb|EEO26184.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC BAA-430] Length = 267 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 10/162 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 + DIET G + IEIG +++ + K F+ F+ PE + K+ GI + Sbjct: 73 IVDIETNGHNPCVHTPIEIGTLKVRN-GKVVDCFESFV---FNAEIPEYITKITGINAQM 128 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L++ P +S+ +F F + + ++AHN FD F++ L++ L R+ T+ + Sbjct: 129 LENAPKLASVLEKFKLFLGD--SIFVAHNVDFDYNFLSQSLEKCGFGYLYNPRLC-TIKL 185 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 A+R + R L L + G I+H++ H AL DS +++ Sbjct: 186 AQRVLQAPRYSLGFLNEFLG--INHQNLHRALQDSKTALEIF 225 >gi|300773554|ref|ZP_07083423.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300759725|gb|EFK56552.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 316 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 5/106 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG++ DRI+EI ++++ N+ G E+ HGI DE +K Sbjct: 12 FDLETTGVNIPLDRIVEISILKVM--PDGNKEVLTRRINPGMPIPAESSMFHGIYDEDVK 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 D PSF + E DF +A+ +N+ KFDV + E R N D Sbjct: 70 DLPSFKELGQEIADFIG--DADLAGYNSNKFDVPMLMEEFLRANVD 113 >gi|116513938|ref|YP_812844.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093253|gb|ABJ58406.1| 3'-5' exonuclease with to CRISPR-associated protein from COG1343 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 290 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 15/171 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGIT 66 R + DIETTGL++++D+I+ IGAV+ + + + + P + ++L GIT Sbjct: 125 RFVAVDIETTGLNTESDQILSIGAVK-------HDGIEFYRLIKQDIDVPKQIVELTGIT 177 Query: 67 DEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 E L K+ E DF N + +N +FD F+N + ++ L + I D Sbjct: 178 SEMLSKEGVPLQDALEELTDFVG--NVPIVGYNFRFDSVFLNRDYRKCGMQEL-KNEIKD 234 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L + +R+ N L ++ YG I ++ H A+ D+ ++ +K++ Sbjct: 235 LLPVVKRREKFLDNYKLQTVLSNYG--IENKVPHNAVSDARATKELAMKLI 283 >gi|315646467|ref|ZP_07899585.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex V453] gi|315278110|gb|EFU41430.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex V453] Length = 961 Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 10/166 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D ETTG S D II++G + + +R + ++ P G P L GI+ Sbjct: 1 MKFAVLDFETTGNQSA-DEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D PS + E ++ + HN FD F+ L R P RI+DT Sbjct: 59 DSDVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILDT 115 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + PS S L + +G + H H A DS L+ Y Sbjct: 116 MHFLKICFPSLSSYQLGMVSSHFG--LEHDRPHQA--DSDALATAY 157 >gi|270261613|ref|ZP_06189886.1| ribonuclease T [Serratia odorifera 4Rx13] gi|270045097|gb|EFA18188.1| ribonuclease T [Serratia odorifera 4Rx13] Length = 226 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 22/195 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET G ++K D ++EI AV L +D + + + T + P G PEAL +G Sbjct: 31 VVIDIETAGFNAKTDALLEIAAVTLKMDEEGWLQQDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF ++ A +AHNA FD F+ A +R + Sbjct: 91 IDPHNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAAAERASLK 150 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C I H AL D+ + ++ ++ Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAADIPFDSTQAHSALYDTEQTAQLFCEL 208 Query: 175 M-----VGGSQINFG 184 + +GG + G Sbjct: 209 VNRWKRLGGWPLAIG 223 >gi|323140812|ref|ZP_08075727.1| exonuclease, DNA polymerase III, epsilon subunit family [Phascolarctobacterium sp. YIT 12067] gi|322414694|gb|EFY05498.1| exonuclease, DNA polymerase III, epsilon subunit family [Phascolarctobacterium sp. YIT 12067] Length = 304 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 24/173 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEAL-KLHGITD 67 V DIETTGL +ND I EI A++ Y R F + P + P + +L GI D Sbjct: 24 VLDIETTGLSPQNDYITEISAIK---YRNNRRVDEFSSLVKP--ELSIPYYITRLTGIND 78 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAEL-----QRINKDPLDPS 121 + D P+ + F DF + + IA +N FD+ FI L +R+ D Sbjct: 79 AMVADAPAIDEVILSFMDFLAD---DIIAGYNVAFDLSFIAENLAGHYAKRLAND----- 130 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +D + +A+ + P + Y I+ H AL+D ++ + Y K+ Sbjct: 131 -YVDVMKLAQNELPFLGRYKQTAVAEY-FNIATAGAHRALVDCNICNGCYQKL 181 >gi|258510511|ref|YP_003183945.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477237|gb|ACV57556.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 240 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R + R +V D ETTGL + R++E+ VE+ + + + P G PEA Sbjct: 1 MRLQEARFVVVDTETTGLPPEG-RVVELALVEVGLEREPQIVYSALVDP-GCPIPPEASA 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 +H ITD + KP ++ + ++ +A +AHNA+FD G + Sbjct: 59 VHHITDRDVAGKPRLFQVWPKVLEYIG--DAILVAHNAEFDRGML 101 >gi|215486829|ref|YP_002329260.1| ribonuclease T [Escherichia coli O127:H6 str. E2348/69] gi|312966583|ref|ZP_07780803.1| ribonuclease T [Escherichia coli 2362-75] gi|331647141|ref|ZP_08348235.1| ribonuclease T [Escherichia coli M605] gi|331657625|ref|ZP_08358587.1| ribonuclease T [Escherichia coli TA206] gi|215264901|emb|CAS09287.1| ribonuclease T (RNase T) [Escherichia coli O127:H6 str. E2348/69] gi|281178725|dbj|BAI55055.1| ribonuclease T [Escherichia coli SE15] gi|312288693|gb|EFR16593.1| ribonuclease T [Escherichia coli 2362-75] gi|315299705|gb|EFU58947.1| ribonuclease T [Escherichia coli MS 16-3] gi|330911459|gb|EGH39969.1| ribonuclease T [Escherichia coli AA86] gi|331043924|gb|EGI16060.1| ribonuclease T [Escherichia coli M605] gi|331055873|gb|EGI27882.1| ribonuclease T [Escherichia coli TA206] Length = 215 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112 I D D+ + S + + F A +AHNA FD F+ A +R Sbjct: 80 I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++P P DT ++A + L+ C+ G+ H AL D+ + ++ Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195 Query: 173 KMM 175 +++ Sbjct: 196 EIV 198 >gi|330952959|gb|EGH53219.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae Cit 7] Length = 203 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 3 RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF + +AHNA FD F + EL RI + Sbjct: 60 SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRT--REQSFAC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +L +ARR P + N RY H A+ D+ + +++ Sbjct: 116 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANL 160 >gi|269955496|ref|YP_003325285.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas cellulosilytica DSM 15894] gi|269304177|gb|ACZ29727.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas cellulosilytica DSM 15894] Length = 247 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 18/155 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD ETTG+D NDRI+ V L + + +L G + EA +HG+T E Sbjct: 19 VGFDTETTGVDVANDRIVTAAVV--LRIPGVSTDVRTWLVDPGVEIPAEAAAIHGVTTEH 76 Query: 70 LKD---KPSFS--SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-- 122 + P+ + I +E E +A+NA FD+ ++AEL R L P R Sbjct: 77 ARAHGVAPAVALEEIAAELAAHLRE-GVPVVAYNAAFDLSLLDAELARHGLATL-PERLG 134 Query: 123 -----IIDTLSIARR--KHPSSRNDLNSLCKRYGI 150 ++D L + R ++ + L L YG+ Sbjct: 135 RAVTPVLDPLVLDRWQDRYRRGKRRLGDLVTHYGV 169 >gi|225012673|ref|ZP_03703108.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium MS024-2A] gi|225003206|gb|EEG41181.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium MS024-2A] Length = 257 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 15/111 (13%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSP-EALKLHGIT 66 FD+ETTG D DRI+EI ++L L K RT N + P EA +HGIT Sbjct: 12 FDLETTGTDISKDRIVEIAVLKLHPDGLQEKKEWRT-------NPEQPIPAEASAVHGIT 64 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 DE + +P+F + +E + F + + +N+ +FD+ + EL R D Sbjct: 65 DEMVASEPTFKELSNEIYSFI--KGCDLAGYNSDRFDIPLLVEELLRAEVD 113 >gi|16129610|ref|NP_416169.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. MG1655] gi|89108494|ref|AP_002274.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. W3110] gi|170081315|ref|YP_001730635.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B] gi|238900868|ref|YP_002926664.1| ribonuclease T (RNase T) [Escherichia coli BW2952] gi|300951237|ref|ZP_07165090.1| ribonuclease T [Escherichia coli MS 116-1] gi|300958527|ref|ZP_07170660.1| ribonuclease T [Escherichia coli MS 175-1] gi|301027673|ref|ZP_07190989.1| ribonuclease T [Escherichia coli MS 196-1] gi|301647832|ref|ZP_07247616.1| ribonuclease T [Escherichia coli MS 146-1] gi|307138309|ref|ZP_07497665.1| ribonuclease T [Escherichia coli H736] gi|331642247|ref|ZP_08343382.1| ribonuclease T [Escherichia coli H736] gi|266952|sp|P30014|RNT_ECOLI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|147688|gb|AAC37008.1| RNaseT [Escherichia coli] gi|1787941|gb|AAC74724.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. MG1655] gi|85675063|dbj|BAA15418.2| ribonuclease T (RNase T) [Escherichia coli str. K12 substr. W3110] gi|169889150|gb|ACB02857.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B] gi|238863473|gb|ACR65471.1| ribonuclease T (RNase T) [Escherichia coli BW2952] gi|260449223|gb|ACX39645.1| ribonuclease T [Escherichia coli DH1] gi|299879216|gb|EFI87427.1| ribonuclease T [Escherichia coli MS 196-1] gi|300314801|gb|EFJ64585.1| ribonuclease T [Escherichia coli MS 175-1] gi|300449493|gb|EFK13113.1| ribonuclease T [Escherichia coli MS 116-1] gi|301074022|gb|EFK88828.1| ribonuclease T [Escherichia coli MS 146-1] gi|309701879|emb|CBJ01191.1| ribonuclease T [Escherichia coli ETEC H10407] gi|315136293|dbj|BAJ43452.1| ribonuclease T [Escherichia coli DH1] gi|315618843|gb|EFU99426.1| ribonuclease T [Escherichia coli 3431] gi|323937257|gb|EGB33536.1| ribonuclease T [Escherichia coli E1520] gi|323940680|gb|EGB36871.1| ribonuclease T [Escherichia coli E482] gi|331039045|gb|EGI11265.1| ribonuclease T [Escherichia coli H736] Length = 215 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112 I D D+ + S + + F A +AHNA FD F+ A +R Sbjct: 80 I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++P P DT ++A + L+ C+ G+ H AL D+ + ++ Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195 Query: 173 KMM 175 +++ Sbjct: 196 EIV 198 >gi|327404630|ref|YP_004345468.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823] gi|327320138|gb|AEA44630.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM 16823] Length = 284 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 24/171 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV------ELLDYSK-TNRTFQVFLCPNGRKNSPEALKL 62 ++ D+ETTGLD DRIIEI + E +Y K N T + S E+ ++ Sbjct: 10 VMLDLETTGLDVAKDRIIEIALIKTTPTGEQSEYCKRVNPTIPI---------SKESAEI 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDP 120 GITDE + +P+F + E F +A+ +N+ KFD+ + E RI+ ++ Sbjct: 61 TGITDEMVATEPTFEQLADEIAAFIG--DADLGGYNSNKFDIPVLAEEFLRISHSFKIND 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + ID +I H + L + + Y + H AL D+ + DV+ Sbjct: 119 RKFIDVQNIF---HKMEQRTLAAAYQFY-CKEPMENAHNALYDTKVTLDVF 165 >gi|15240411|ref|NP_198046.1| exonuclease family protein [Arabidopsis thaliana] gi|30690464|ref|NP_851082.1| exonuclease family protein [Arabidopsis thaliana] gi|30690468|ref|NP_851083.1| exonuclease family protein [Arabidopsis thaliana] gi|42573491|ref|NP_974842.1| exonuclease family protein [Arabidopsis thaliana] gi|51968684|dbj|BAD43034.1| unknown protein [Arabidopsis thaliana] gi|108385373|gb|ABF85778.1| At5g26940 [Arabidopsis thaliana] gi|332006246|gb|AED93629.1| exonuclease family protein [Arabidopsis thaliana] gi|332006247|gb|AED93630.1| exonuclease family protein [Arabidopsis thaliana] gi|332006248|gb|AED93631.1| exonuclease family protein [Arabidopsis thaliana] gi|332006249|gb|AED93632.1| exonuclease family protein [Arabidopsis thaliana] Length = 316 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 19/181 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGL KN+RIIEI A ++ + TFQ + P G A +HGI ++ Sbjct: 112 IVSDLETTGLHRKNERIIEIAAQDIAGGGYS--TFQTLVNP-GVVPITNA-HIHGIRNDM 167 Query: 70 L--KDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAK-FDVGFINAELQRINKDPLDPS 121 + + P + F + + +AHN K FD F+ E R + + Sbjct: 168 VCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNW 227 Query: 122 RIIDTLSIARRKHPSSR------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++D+L +AR S + L +L Y +T H AL D LLS V+ K+ Sbjct: 228 LLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLT-REGDAHRALSDVLLLSKVFQKLT 286 Query: 176 V 176 + Sbjct: 287 I 287 >gi|238919999|ref|YP_002933514.1| ribonuclease T [Edwardsiella ictaluri 93-146] gi|238869568|gb|ACR69279.1| ribonuclease T, putative [Edwardsiella ictaluri 93-146] Length = 221 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+ + ++EI AV L + +T++ + P G + SPEAL +G Sbjct: 20 VVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHIDPFEGAELSPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF +Q A +AHNA FD F+ A R + Sbjct: 80 IDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMAAAARAGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C I H AL D+ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACISAQIPFDSAQAHSALYDTQQTATLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|156303079|ref|XP_001617467.1| hypothetical protein NEMVEDRAFT_v1g226058 [Nematostella vectensis] gi|156193984|gb|EDO25367.1| predicted protein [Nematostella vectensis] Length = 256 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 27/117 (23%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS------------PEA 59 FD+ETTG+D DRI+EI F+VF PNG K S P+ Sbjct: 12 FDLETTGIDVARDRIVEISV------------FKVF--PNGNKESKTWLVNPTIPIPPQT 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 +HGITDE + ++P+F+ + ++ + + ++ +FD+ + EL R D Sbjct: 58 TAVHGITDEKVANEPTFNELAPHVYNMIKDSDLAGF-NSDRFDIPLLAEELLRAGVD 113 >gi|330969506|gb|EGH69572.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. aceris str. M302273PT] Length = 203 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 3 RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF + +AHNA FD F + EL RI + Sbjct: 60 SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRT--REQSFAC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +L +ARR P + N RY H A+ D+ + +++ Sbjct: 116 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANL 160 >gi|323462912|pdb|3NH0|A Chain A, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Aac) gi|323462913|pdb|3NH0|B Chain B, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Aac) gi|323462916|pdb|3NH1|A Chain A, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462917|pdb|3NH1|B Chain B, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462918|pdb|3NH1|C Chain C, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462919|pdb|3NH1|D Chain D, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462924|pdb|3NH2|A Chain A, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang gi|323462925|pdb|3NH2|B Chain B, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang gi|323462928|pdb|3NH2|E Chain E, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang gi|323462929|pdb|3NH2|F Chain F, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang Length = 235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 40 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 99 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112 I D D+ + S + + F A +AHNA FD F+ A +R Sbjct: 100 I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 157 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++P P DT ++A + L+ C+ G+ H AL D+ + ++ Sbjct: 158 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 215 Query: 173 KMM 175 +++ Sbjct: 216 EIV 218 >gi|227536554|ref|ZP_03966603.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] gi|227243631|gb|EEI93646.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] Length = 316 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 5/106 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG++ DRI+EI ++++ N+ G E+ HGI DE +K Sbjct: 12 FDLETTGVNIPLDRIVEISILKVM--PDGNKEVLTRRINPGMPIPAESSMFHGIYDEDVK 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 D PSF + E DF +A+ +N+ KFDV + E R N D Sbjct: 70 DLPSFKELGQEIADFIG--DADLAGYNSNKFDVPMLMEEFLRANVD 113 >gi|199598401|ref|ZP_03211820.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001] gi|258508490|ref|YP_003171241.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus rhamnosus GG] gi|199590720|gb|EDY98807.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001] gi|257148417|emb|CAR87390.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus rhamnosus GG] gi|259649800|dbj|BAI41962.1| DNA helicase [Lactobacillus rhamnosus GG] Length = 933 Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 11/157 (7%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTG K+ DR+I+ G L+ + K +T + P+ ++ P+ + +L GI+ E Sbjct: 9 VVDLETTGTSVKDGDRMIQFGCA-LVRHGKIIQTISQMINPD--RSVPQTIQRLTGISPE 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F + + ++AHN FD F+NAE +RI L IDT+ Sbjct: 66 RLVAAPYFDEVAPALHQVLTK--TVFVAHNVNFDYPFLNAEFERIGLPKLQ-LEAIDTVE 122 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 +A+ P S L+ L + I H + H A D+ Sbjct: 123 LAQVLLPEISSFRLSDLTTHFA--IQHDNPHQADSDA 157 >gi|229552292|ref|ZP_04441017.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus rhamnosus LMS2-1] gi|258539701|ref|YP_003174200.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus rhamnosus Lc 705] gi|229314364|gb|EEN80337.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus rhamnosus LMS2-1] gi|257151377|emb|CAR90349.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus rhamnosus Lc 705] Length = 933 Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 11/157 (7%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTG K+ DR+I+ G L+ + K +T + P+ ++ P+ + +L GI+ E Sbjct: 9 VVDLETTGTSVKDGDRMIQFGCA-LVRHGKIIQTISQMINPD--RSVPQTIQRLTGISPE 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F + + ++AHN FD F+NAE +RI L IDT+ Sbjct: 66 RLVAAPYFDEVAPALHQVLTK--TVFVAHNVNFDYPFLNAEFERIGLPKLQ-LEAIDTVE 122 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 +A+ P S L+ L + I H + H A D+ Sbjct: 123 LAQVLLPEISSFRLSDLTTHFA--IQHDNPHQADSDA 157 >gi|227890751|ref|ZP_04008556.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus salivarius ATCC 11741] gi|227867160|gb|EEJ74581.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus salivarius ATCC 11741] Length = 937 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 13/168 (7%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRT---FQVFLCPNGRKNSPEALKLHGIT 66 V D+ETTG +D+II+ D+ ++N+ F + P G E KL GI Sbjct: 17 VVDLETTGPKQDGSDKIIQFSC----DFVQSNKIVNHFSTLINP-GMPIPAEVKKLTGIK 71 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ ++ P F + + QN ++AHN FD F+++EL+R L+ ++DT Sbjct: 72 DKDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELELP-MMDT 128 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + + +P+ + +Y + +SH H A D+ +++ I + Sbjct: 129 VQLTQIIYPTLVSYRLIDVSKY-LQLSHIHPHKADSDTKATAELLINL 175 >gi|182418640|ref|ZP_02949917.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521] gi|237668503|ref|ZP_04528487.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377502|gb|EDT75056.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521] gi|237656851|gb|EEP54407.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 308 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 109/257 (42%), Gaps = 40/257 (15%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K IG V ++ S+ + P + P + +HGI Sbjct: 1 MDYIAIDFETA--NEKRSSPCSIGIV-VVKNSEVVEKIHYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++++P F I+ +F+ N IAHNA FD+ + ++ N +P+ + I T Sbjct: 58 PGMVENEPEFDEIWKRIKGYFD--NGFVIAHNASFDISVLRRTMELYNIEPVS-FKYICT 114 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM----------- 174 + +++ +P N LN++ + G H H AL D+ S++ I + Sbjct: 115 MKLSKNFYPQIENSKLNTVNRFLGYEFDH---HDALADALACSNILINISKELGNEDIDE 171 Query: 175 ---MVGGSQINF---GFK--TNEDRFFKEEKKTV----------PNISLLKRDKPLFT-R 215 VG + N G+K + + R F++ + PN + K D +FT R Sbjct: 172 ICRCVGVTIGNVNEEGYKPSSAKGRIFRKSSRVSSCNNSNSLGNPNYDVFKGDTVVFTGR 231 Query: 216 ITKEELDEHDKTIQTLG 232 ++ DE + ++ LG Sbjct: 232 LSSMTRDEAIRLVRRLG 248 >gi|288928331|ref|ZP_06422178.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108] gi|288331165|gb|EFC69749.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108] Length = 284 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGLD NDRII+I +++ K R + + P R E +L GIT + Sbjct: 10 VVFDLETTGLDLVNDRIIQISYIKIYPDGKEERE-NLLVYPQ-RPIPDEVSELTGITTDL 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDTL 127 ++D P+F + + F + ++ N+ FD+ + E R D +R+ID Sbjct: 68 VEDAPTFEELAPRLNEVF--KGCDFAGFNSNHFDIPMLAEEFLRAEIDFDFSSARLIDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 +I H + +L + K Y Sbjct: 126 TIF---HKMEKRNLAAAYKFY 143 >gi|93006690|ref|YP_581127.1| ribonuclease T [Psychrobacter cryohalolentis K5] gi|92394368|gb|ABE75643.1| RNAse T [Psychrobacter cryohalolentis K5] Length = 246 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 20/191 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R K +V D+ET G +++ D ++EI + +L + F + P G P Sbjct: 33 RFRKFLPVVVDVETAGFNAQTDALLEIACIPVLLNEQGVFYPGEAFNAHIEPFEGANLEP 92 Query: 58 EALKLHGI-TDEFLK------DKPSFSSIF---SEFWDFFNEQNAEWIAHNAKFDVGFIN 107 AL GI + L+ +K + IF E + + I HNA FD+ F+N Sbjct: 93 SALAFTGIDPNNPLRKAIAEDEKTALRRIFKGLKEVRRIEDCRQCVLIGHNAHFDLAFLN 152 Query: 108 AELQRINK---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R N +P + DT++++ + L CK G+ H AL D+ Sbjct: 153 AAVLRTNNKSHNPFHNFSVFDTVTLSALAF--GQTVLARACKAAGLDFDGNDAHSALYDT 210 Query: 165 HLLSDVYIKMM 175 ++++ ++ Sbjct: 211 QKTAELFCYIL 221 >gi|332293348|ref|YP_004431957.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332171434|gb|AEE20689.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 466 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 7/148 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG +RI EI AV L D ++ F + P + P L GI D + Sbjct: 11 VIDVETTGKGINGNRITEICAVRLKDGEVVDK-FTSLVNPE-QYIPPFITNLTGIDDAMV 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P F+ I + A ++AHN FD + +E +R+ + + T+ ++ Sbjct: 69 ADAPLFNEIADRIIEI--SSGAIFVAHNVTFDFNVLRSEFKRLGHS--FTRKKLCTVRLS 124 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157 R+ PS + L +LC GI +++R + Sbjct: 125 RKLIPSLFSYSLGNLCASIGIPLNNRHR 152 >gi|331683160|ref|ZP_08383761.1| ribonuclease T [Escherichia coli H299] gi|331079375|gb|EGI50572.1| ribonuclease T [Escherichia coli H299] Length = 215 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112 I D D+ + S + + F A +AHNA FD F+ A +R Sbjct: 80 I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHNFMMAAAERAS 137 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++P P DT ++A + L+ C+ G+ H AL D+ + ++ Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195 Query: 173 KMM 175 +++ Sbjct: 196 EIV 198 >gi|297191229|ref|ZP_06908627.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis ATCC 25486] gi|297150828|gb|EDY62400.2| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis ATCC 25486] Length = 259 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 21/160 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68 + FD+ETTG D + RI+ VEL ++ G +A +HGI++E Sbjct: 28 VGFDLETTGTDPLDARIVTAAVVELRAGEPVRS--HGWMADPGISIPAQASAIHGISNER 85 Query: 69 -FLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQ---------RINK 115 + +P+ + E D Q +A+NA FD+ + AELQ R++ Sbjct: 86 ASAEGRPA-REVAEEIADTLTAHWRQGVPVVAYNAAFDLTLLAAELQRHGLPSLGERLDG 144 Query: 116 DPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITIS 153 P+ P +ID +I R ++ + L ++C YG+ + Sbjct: 145 RPIGP--VIDPYTIDRAVDRYRKGKRTLEAVCVEYGVLLG 182 >gi|21592760|gb|AAM64709.1| unknown [Arabidopsis thaliana] Length = 316 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 19/181 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGL KN+RIIEI A ++ + TFQ + P G A +HGI ++ Sbjct: 112 IVSDLETTGLHRKNERIIEIAAQDIAGGGYS--TFQTLVNP-GVVPITNA-HIHGIRNDM 167 Query: 70 L--KDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAK-FDVGFINAELQRINKDPLDPS 121 + + P + F + + +AHN K FD F+ E R + + Sbjct: 168 VCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNW 227 Query: 122 RIIDTLSIARRKHPSSR------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++D+L +AR S + L +L Y +T H AL D LLS V+ K+ Sbjct: 228 LLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLT-REGDAHRALSDVLLLSKVFQKLT 286 Query: 176 V 176 + Sbjct: 287 I 287 >gi|161503473|ref|YP_001570585.1| ribonuclease T [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|204927787|ref|ZP_03218988.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352852|ref|YP_002226653.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857062|ref|YP_002243713.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|160864820|gb|ABX21443.1| hypothetical protein SARI_01547 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|204323129|gb|EDZ08325.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272633|emb|CAR37543.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708865|emb|CAR33195.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627923|gb|EGE34266.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 215 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P N PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF E A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|186895675|ref|YP_001872787.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+] gi|186698701|gb|ACC89330.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+] Length = 226 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++++D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF ++ A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ + ++ ++ Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCEL 208 Query: 175 M 175 + Sbjct: 209 V 209 >gi|206580062|ref|YP_002238188.1| ribonuclease T [Klebsiella pneumoniae 342] gi|288935177|ref|YP_003439236.1| ribonuclease T [Klebsiella variicola At-22] gi|290509235|ref|ZP_06548606.1| ribonuclease T [Klebsiella sp. 1_1_55] gi|206569120|gb|ACI10896.1| ribonuclease T [Klebsiella pneumoniae 342] gi|288889886|gb|ADC58204.1| ribonuclease T [Klebsiella variicola At-22] gi|289778629|gb|EFD86626.1| ribonuclease T [Klebsiella sp. 1_1_55] Length = 215 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGF--INAELQRIN 114 I + + + +IF E + A +AHNA FD F AE + Sbjct: 80 INPHDPERGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACIAAGMAFDGAQAHSALYDTEQTAQLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|66047527|ref|YP_237368.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae B728a] gi|63258234|gb|AAY39330.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae B728a] Length = 204 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 4 RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF + +AHNA FD F + EL RI + Sbjct: 61 SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRT--REQSFAC 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +L +ARR P + N RY H A+ D+ + +++ Sbjct: 117 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANL 161 >gi|330938176|gb|EGH41873.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. pisi str. 1704B] Length = 203 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 3 RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF + +AHNA FD F + EL RI + Sbjct: 60 SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIERT--REQSFAC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +L +ARR P + N RY H A+ D+ + +++ Sbjct: 116 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANL 160 >gi|309807500|ref|ZP_07701459.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] gi|308169250|gb|EFO71309.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] Length = 234 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 16/180 (8%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K +DRII+ G + D K +T+ + P K P A++ L GI+++ Sbjct: 6 VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 63 EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 119 Query: 129 IARRKHPSS-----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-MVGGSQIN 182 +A+ P+ ++ N+L ++ HR+ AL+ + +L + K+ M+ + +N Sbjct: 120 LAQIAFPTIPSYKLQDITNTLHIKHA--NPHRADSDALVTAKMLLKIIDKIEMLPTATLN 177 >gi|300717064|ref|YP_003741867.1| exodeoxyribonuclease X [Erwinia billingiae Eb661] gi|299062900|emb|CAX60020.1| Exodeoxyribonuclease X [Erwinia billingiae Eb661] Length = 221 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+E+ +V+++D K +CP+ R SP A+ +H IT+ + Sbjct: 4 VIDTETCGLQGG---IVEVASVDVID-GKIVNPMSDLICPD-RPISPHAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + P I T+++A Sbjct: 59 ADKPPIEHAIGRY-----HGSPYYVAHNASFDRRML----------PEMHGEWICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 R P + +L + + ++ + H AL D ++ + + I++M Sbjct: 104 RGLWPGIKYSNQALRETLKLEVTPPADLHAHRALYDCYVTAALLIRIM 151 >gi|323340217|ref|ZP_08080481.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ruminis ATCC 25644] gi|323092408|gb|EFZ35016.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ruminis ATCC 25644] Length = 180 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 11/140 (7%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + +HGI + + D P FS ++ FF ++ +AHNA FD + L++ Sbjct: 50 IAIHGIKPQMVADSPDFSELWPHIESFFTPESL-VVAHNAPFDCSVLTRTLEKYGIAA-- 106 Query: 120 PS-RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 P +IDT+ +++ + N L++LC+ I ++H H AL DS + + + + Sbjct: 107 PHFNVIDTVKTSKQFYDFQDNKLDTLCQNLDIDLAHH--HNALDDSQACAKILLSQLQ-- 162 Query: 179 SQINFGFKTNEDRFFKEEKK 198 NFG T + +K +K Sbjct: 163 ---NFGSDTLKSFIYKYPRK 179 >gi|330976913|gb|EGH76936.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 203 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 3 RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF + +AHNA FD F + EL RI + Sbjct: 60 SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIERT--REQSFAC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +L +ARR P + N RY H A+ D+ + +++ Sbjct: 116 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANL 160 >gi|309809881|ref|ZP_07703731.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] gi|308169833|gb|EFO71876.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] Length = 233 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 16/180 (8%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K +DRII+ G + D K +T+ + P K P A++ L GI+++ Sbjct: 13 VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 70 EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126 Query: 129 IARRKHPSS-----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-MVGGSQIN 182 +A+ P+ ++ N+L ++ HR+ AL+ + +L + K+ M+ + +N Sbjct: 127 LAQIAFPTIPSYKLQDITNTLHIKHA--NPHRADSDALVTAKMLLKIIEKIEMLPTATLN 184 >gi|217032955|ref|ZP_03438429.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128] gi|216945324|gb|EEC23998.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128] Length = 287 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GIT E Sbjct: 77 DLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221 >gi|88801444|ref|ZP_01116972.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P] gi|88782102|gb|EAR13279.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P] Length = 462 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 11/165 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65 M V DIETTG K +I EI A+ + D K F + P +N P + L GI Sbjct: 1 MLYAVVDIETTGNGPKGQKITEISAL-IFDGKKIVDEFTSLVNP--EQNIPAFITSLTGI 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+ +++ P F I + + +N ++AHN FD I AE + + D + + Sbjct: 58 TNAMVRNAPRFFEIAKKVAEI--TENTIFVAHNVNFDYNIIQAEFKSLGFD--FKRKKLC 113 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITIS--HRSKHGALLDSHLL 167 T+ + R+ P L ++C I I+ HR+K A + LL Sbjct: 114 TIRLTRKIIPGLPSYSLGNICTGENIPINGRHRAKGDAEATAELL 158 >gi|108807723|ref|YP_651639.1| ribonuclease T [Yersinia pestis Antiqua] gi|108811999|ref|YP_647766.1| ribonuclease T [Yersinia pestis Nepal516] gi|162420848|ref|YP_001606979.1| ribonuclease T [Yersinia pestis Angola] gi|165926445|ref|ZP_02222277.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016] gi|165938652|ref|ZP_02227208.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275] gi|166010664|ref|ZP_02231562.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001] gi|166211013|ref|ZP_02237048.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004] gi|167400761|ref|ZP_02306267.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422151|ref|ZP_02313904.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424940|ref|ZP_02316693.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270490511|ref|ZP_06207585.1| ribonuclease T [Yersinia pestis KIM D27] gi|294503612|ref|YP_003567674.1| ribonuclease T [Yersinia pestis Z176003] gi|108775647|gb|ABG18166.1| RNAse T [Yersinia pestis Nepal516] gi|108779636|gb|ABG13694.1| RNAse T [Yersinia pestis Antiqua] gi|162353663|gb|ABX87611.1| ribonuclease T [Yersinia pestis Angola] gi|165913526|gb|EDR32147.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275] gi|165921666|gb|EDR38863.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016] gi|165990366|gb|EDR42667.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001] gi|166208193|gb|EDR52673.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004] gi|166958963|gb|EDR55984.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049614|gb|EDR61022.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056127|gb|EDR65905.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262361655|gb|ACY58376.1| ribonuclease T [Yersinia pestis D106004] gi|262365605|gb|ACY62162.1| ribonuclease T [Yersinia pestis D182038] gi|270339015|gb|EFA49792.1| ribonuclease T [Yersinia pestis KIM D27] gi|294354071|gb|ADE64412.1| ribonuclease T [Yersinia pestis Z176003] Length = 226 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++++D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF ++ A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ + ++ ++ Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCEL 208 Query: 175 M 175 + Sbjct: 209 V 209 >gi|229488668|ref|ZP_04382534.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121] gi|229324172|gb|EEN89927.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121] Length = 226 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 9/148 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF- 69 FD+ETTG D RI+ V ++D S + +L G A +HGI+ EF Sbjct: 11 AFDLETTGRDPSTARIVS-ACVAVIDGSSVET--RTWLLDPGVDIPAGASAVHGISTEFA 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +S + E + + A +A NA +D+ ++AE RI K P +ID Sbjct: 68 AQHGQDYSEGYEEIREALHNSWARDHAVVAFNASYDLTVMHAEGLRIGKPAFVPGLVIDP 127 Query: 127 LSIARRKHP--SSRNDLNSLCKRYGITI 152 I R + L ++C+ YGI++ Sbjct: 128 YVIDRAMDTFRKGKRTLAAVCEHYGISL 155 >gi|145598067|ref|YP_001162143.1| ribonuclease T [Yersinia pestis Pestoides F] gi|170024107|ref|YP_001720612.1| ribonuclease T [Yersinia pseudotuberculosis YPIII] gi|145209763|gb|ABP39170.1| RNAse T [Yersinia pestis Pestoides F] gi|169750641|gb|ACA68159.1| ribonuclease T [Yersinia pseudotuberculosis YPIII] Length = 226 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++++D ++EI AV L + + T + P G PEAL +G Sbjct: 31 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF ++ A +AHNA FD F+ A +R + Sbjct: 91 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 150 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ + ++ ++ Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCEL 208 Query: 175 M 175 + Sbjct: 209 V 209 >gi|146306423|ref|YP_001186888.1| ribonuclease T [Pseudomonas mendocina ymp] gi|145574624|gb|ABP84156.1| RNAse T [Pseudomonas mendocina ymp] Length = 224 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 31/188 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-----------GRKNSP 57 +V D+ET G +S D ++EI A + +D S FL P+ G Sbjct: 32 VVVDVETGGFNSATDALLEIAATTIAMDESG-------FLYPDHTHFFRIEPFEGANIEA 84 Query: 58 EALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAE 109 AL+ GI D L+ S E + + + A + HN+ FD+GF+NA Sbjct: 85 AALEFTGIKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAA 144 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + R I ++P P DT ++A + + L C+ GI + H A D+ Sbjct: 145 VARCGIKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIEFDGKEAHSARYDTEKT 202 Query: 168 SDVYIKMM 175 ++++ ++ Sbjct: 203 AELFCGIV 210 >gi|289675841|ref|ZP_06496731.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae FF5] Length = 204 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 4 RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF + +AHNA FD F + EL RI + Sbjct: 61 SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIERT--REQSFAC 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +L +ARR P + N RY H A+ D+ + +++ Sbjct: 117 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANL 161 >gi|269941365|emb|CBI49762.1| putative exonuclease [Staphylococcus aureus subsp. aureus TW20] Length = 184 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 9/166 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + K I +G V+++D S+ +TF + P S + +K+HGI E Sbjct: 7 VALDFETA--NGKRTSICSVGMVKVID-SQITKTFHTLVNPQDYF-SQQNIKIHGIQPED 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P+F +F F + +AHNA FD+ ++ +Q I P + + Sbjct: 63 VENAPTFDYVFPYMMQFIAD--LPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQL 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+R S R L + + Y + H AL D+ + + +++ Sbjct: 120 AKRTVDSYRYGLKHMMEFY--QLDFHGHHDALNDAKACAMITFRLL 163 >gi|228471317|ref|ZP_04056120.1| exonuclease [Porphyromonas uenonis 60-3] gi|228306894|gb|EEK16002.1| exonuclease [Porphyromonas uenonis 60-3] Length = 255 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67 + FDIE TGLD NDRIIE+ ++L+ D + RT + N P E+ +HGITD Sbjct: 10 VFFDIEATGLDITNDRIIELTILKLMPDGERIVRTRRF----NPEMPIPAESTAIHGITD 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIID 125 + ++D P F + + + + +N+ +FD+ + E R + L + ID Sbjct: 66 DDVRDCPPFRACAKSLAELID--GCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLAMQHID 123 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +I + P + + C R H HGA D+ DV + + Sbjct: 124 VQTIFHKMEPRTLEGAVRFYCHR-----EHIGAHGAEADTIATLDVLMAQL 169 >gi|323339821|ref|ZP_08080090.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644] gi|323092694|gb|EFZ35297.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644] Length = 968 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 9/164 (5%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+E TG + + ++R+I+ V + +K TF + P RK + L ITD+ Sbjct: 42 VVDLEMTGTNPNGSERLIQFSCV-FTEGNKIVNTFSTLINPL-RKIPEDVQNLTNITDKD 99 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K P+F + + + + ++AHN + D F+N+E +RI LD IDT+ + Sbjct: 100 VKSAPTFDEVAGTIYALLS--DTVFVAHNIELDYRFLNSEFERIGFPKLDLEG-IDTVQL 156 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 A+ P+ + L L G H+ H A D+ + ++++I Sbjct: 157 AQIAFPTLASYRLGDLAHFLG--FKHKHPHHADSDAFVTAELFI 198 >gi|149374321|ref|ZP_01892095.1| ribonuclease T [Marinobacter algicola DG893] gi|149361024|gb|EDM49474.1| ribonuclease T [Marinobacter algicola DG893] Length = 211 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI AV L + K T + P G AL G Sbjct: 11 VVVDVETGGFNPEKDALLEIAAVILTMDDDGWLKRAETHVQQIDPFEGANLEQSALDFTG 70 Query: 65 ITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I E + ++ S IF + A + HNA FD F+ A R I Sbjct: 71 IDPWNPEREAVPEREGMSEIFGPIRKAVKAHDCKRAVLVGHNATFDHNFVFAAALRSDIR 130 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + L CK GI S++ H A D+ +D++ + Sbjct: 131 RNPFHPFSTFDTATLAGLAY--GHTVLAQACKLAGIPFSNKDAHSAAYDAEKTADLFCGI 188 Query: 175 M 175 + Sbjct: 189 V 189 >gi|94263435|ref|ZP_01287248.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1] gi|94270278|ref|ZP_01291698.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1] gi|93450870|gb|EAT01889.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1] gi|93456165|gb|EAT06304.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1] Length = 238 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 19/184 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD E TGLD + D I+ IGAV + + TF V + P+ L +H +T Sbjct: 41 VVFDTELTGLDRRRDEIVSIGAVRINNLRIMVGDTFYVQVKPSQALPKDSTL-IHRLTPH 99 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +++ F D+ + + + H DV F+N R L + +DT+ Sbjct: 100 QLSDAPPLATVLPGFIDYCGQ--SLLVGHFVGLDVAFVNRACLRYYGARLS-NPCLDTMH 156 Query: 129 IA--------RRKHPSSRND----LNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKM 174 +A ++ H R D L +L +YG+ H + AL ++L + KM Sbjct: 157 LAQTHTEMQWQQYHDRFRMDISYNLAALGAKYGLPAFTHHNAYEDALQTAYLFIYLVKKM 216 Query: 175 MVGG 178 G Sbjct: 217 RSQG 220 >gi|270676235|ref|ZP_06222692.1| ribonuclease T [Haemophilus influenzae HK1212] gi|270316426|gb|EFA28313.1| ribonuclease T [Haemophilus influenzae HK1212] Length = 164 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 18/145 (12%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L +D Y ++ + P G Sbjct: 2 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 61 Query: 56 SPEALKLHGIT--DEFLKDKPSFSSIFSEFWDF------FNEQNAEWIAHNAKFDVGFIN 107 +PE+LK +GI + P +I F + Q + +AHNA FD F+ Sbjct: 62 NPESLKFNGIDIHNPLRGTVPELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 121 Query: 108 AELQR--INKDPLDPSRIIDTLSIA 130 A +R + ++P P + DT S+A Sbjct: 122 AAAERTGVKRNPFHPFGMFDTASLA 146 >gi|255689883|ref|ZP_05413558.1| exonuclease [Bacteroides finegoldii DSM 17565] gi|260624488|gb|EEX47359.1| exonuclease [Bacteroides finegoldii DSM 17565] Length = 183 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 7/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ET K I E G + D K T + P G S +++HGI Sbjct: 7 IAIDFETA--TGKRASICEAGICVVRD-GKIVETRSWLVRPQGNSYSYWNMQIHGIRPND 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 D P F +++E + + +AHNA FD+G I L+ + L+ + +L Sbjct: 64 TADSPEFPEVWTEISKYLKDIPVL-VAHNAAFDIGCIRHSLELYGMEKLEITYYC-SLRA 121 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 AR+ + N L+ LC ++ I + H A D+ + + +++K Sbjct: 122 ARKLYSFGCNSLDYLCDQF--RIPYGQHHRAGDDAEMCARLFLK 163 >gi|86143556|ref|ZP_01061941.1| nuclease subunit Cho of the excinuclease complex (UvrC-like protein) [Leeuwenhoekiella blandensis MED217] gi|85830003|gb|EAQ48464.1| nuclease subunit Cho of the excinuclease complex (UvrC-like protein) [Leeuwenhoekiella blandensis MED217] Length = 519 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 9/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTG K ++I EI + L + + NR F + P GR+ KL GI D + Sbjct: 52 IIDVETTGGGIKGNKITEICIIVLQEGKEINR-FASLVNP-GREIPLYIEKLTGINDRMV 109 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P F + + Q+ ++AHN FD + AE + D + R+ T+ +A Sbjct: 110 EDAPYFDELAPQIDAL--TQDCIFVAHNVGFDYNVVRAEFKEAGLD-FNRKRLC-TVRLA 165 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 ++ P + L +LC I I H +H A D+ Sbjct: 166 KKLIPGLFSYSLGNLCT--SINIPHYDRHRATGDT 198 >gi|51596620|ref|YP_070811.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953] gi|81825791|sp|Q66A36|RNT_YERPS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|51589902|emb|CAH21534.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953] Length = 215 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++++D ++EI AV L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF ++ A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|227328518|ref|ZP_03832542.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 223 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++E+ AV L +D + K + T + P G P AL +G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLKPDETLHFHVEPFEGAILEPAALAFNG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + IF +Q A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAAERCSLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D++ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|222109241|ref|YP_002551505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY] gi|221728685|gb|ACM31505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY] Length = 218 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 8/148 (5%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ ++ R E+ A+ L++ + +Q + G + P +L GIT+ Sbjct: 8 VIDFETTGMMPAQGARATEV-AIVLMEGGRVVDRYQSLMR-TGVRIPPFITQLTGITNAM 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P +++ E F +A +AHNA FD F AE+Q P T+ + Sbjct: 66 VEAAPDAAAVMREAARFVG--DAPMVAHNAAFDRKFWQAEMQHAGLA--APHPFACTVLL 121 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRS 156 +RR +P + + L L G+ + R+ Sbjct: 122 SRRVYPDAPSHSLGRLTDHLGLPRAGRA 149 >gi|26987821|ref|NP_743246.1| ribonuclease T [Pseudomonas putida KT2440] gi|37999414|sp|Q88NW8|RNT_PSEPK RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|24982520|gb|AAN66710.1|AE016299_6 ribonuclease T [Pseudomonas putida KT2440] Length = 203 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 29/187 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-----------NGRKNSPE 58 +V D+ET G +S D ++EI AV + K FL P G P Sbjct: 11 VVVDVETGGFNSATDALLEIAAVTIGMDEKG------FLFPEHTYFHRVEPFEGANIEPA 64 Query: 59 ALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAEL 110 AL+ GI D L+ S S ++ + + + A + HN+ FD+GF+NA + Sbjct: 65 ALEFTGIKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAV 124 Query: 111 QR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 R + ++P P DT ++A + + L C+ I R H A D+ + Sbjct: 125 ARNDLKRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTA 182 Query: 169 DVYIKMM 175 +++ ++ Sbjct: 183 ELFCGIV 189 >gi|326794723|ref|YP_004312543.1| ribonuclease T [Marinomonas mediterranea MMB-1] gi|326545487|gb|ADZ90707.1| Ribonuclease T [Marinomonas mediterranea MMB-1] Length = 224 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 25/195 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + K D ++EI A L +D + + T + + P G AL G Sbjct: 16 VVIDVETAGFNEKTDALLEIAASILRMDENGDLYIHETLEYIVQPFEGANLEKAALDFTG 75 Query: 65 ITDEFLKDK---PSFSSIFSEFWDFFNE------QNAEWIAHNAKFDVGFINAELQR--I 113 I D F D+ P ++ E + A + HN+ FD GF+NA ++R I Sbjct: 76 I-DPFDPDRNDMPESEALTQMLSKVRKELKSVGCKRAILVGHNSSFDHGFLNAAIERCSI 134 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI- 172 ++P P DT S+A + + L C+ I S+ H A D+ ++++ Sbjct: 135 KRNPFHPFSSFDTASLAGLAY--GQTVLAKACEAANIPFSNSQAHSAKYDTEKTAELFCE 192 Query: 173 -----KMMVGGSQIN 182 K M G SQ + Sbjct: 193 IVNRWKQMGGWSQFS 207 >gi|321309652|ref|YP_004191981.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str. Langford 1] gi|319801496|emb|CBY92142.1| DNA polymerase III, alpha subunit, Gram-positive type (fragment) [Mycoplasma haemofelis str. Langford 1] Length = 216 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 21/201 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHGI 65 V DIETTG K I EI + + + ++ L P R +P I Sbjct: 22 VLDIETTGTSYKTSEITEISIHKYRNGKRVDKYHSFVKISRPLPPFIRIFTPH------I 75 Query: 66 TDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI 123 TDE L ++ + E DF + + +AHN FD+ F+ A + PL + I Sbjct: 76 TDELLAREGKDLDVVIKEVKDF--TKGSILVAHNGVTFDLLFLKAACIKYGLKPLS-NPI 132 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG----G 178 IDTL ++R P+ R + L +C+R + H A D +L V+ VG G Sbjct: 133 IDTLRLSRSTFPNERYHTLGDVCRRMQVNYDEDRAHSADYDVDVLWQVFWNFAVGLKKIG 192 Query: 179 SQINFGFKTNEDRFFKEEKKT 199 + G + + F KKT Sbjct: 193 VNLEDGLQEANEAIFNMFKKT 213 >gi|206889195|ref|YP_002247891.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741133|gb|ACI20190.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 225 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 15/182 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D E TGLD KND II IGA+ + + S F L P K +A+ +H +T Sbjct: 21 VVIDTELTGLDEKNDSIISIGAITMRERSILIGDIFYRILNPQC-KPKDKAVLIHKLTST 79 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-----INKDPLDPSRI 123 L+ P I EF DF +N + H + D+ F+ E + + +D I Sbjct: 80 ELEQCPDIKLILKEFIDFI--KNRPIVGHFIEIDIKFLRKETSKWLNTGFTPEAIDTYII 137 Query: 124 IDTL---SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + L I +K +++ L + + + I + H AL D+ + + ++ + ++ + Sbjct: 138 FNWLIEREIISKKFKGAKS-LPEIAEAFDIKVDML--HDALYDAFITAQIFQREIIMVQK 194 Query: 181 IN 182 IN Sbjct: 195 IN 196 >gi|302550179|ref|ZP_07302521.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] gi|302467797|gb|EFL30890.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] Length = 242 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 13/153 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTG+D + DRI+ AV + D +L G EA +HG+T+E L+ Sbjct: 13 FDTETTGVDVETDRIVS-AAVVVQDAPGVRPRVSRWLVNPGVPVPAEATAVHGLTEEHLQ 71 Query: 72 DKPSF-SSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLD------PS 121 + + + E + EQ + NA FD+ ++ EL+R L P Sbjct: 72 RNGRWPAPVVYEIAETLAEQAHAGRPVVVMNAPFDLTLLDRELRRHRASALGRWFESAPL 131 Query: 122 RIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 ++D + + ++ R L LC YG+ + Sbjct: 132 WVLDPRVLDKHLDRYRKGRRTLTDLCAHYGVAL 164 >gi|153949552|ref|YP_001400734.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758] gi|166991091|sp|A7FHK6|RNT_YERP3 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|152961047|gb|ABS48508.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758] Length = 215 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++++D ++EI AV L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF ++ A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|228476066|ref|ZP_04060774.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis SK119] gi|228269889|gb|EEK11369.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis SK119] Length = 905 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 8/160 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG ++D II+IG + D +K + T+ + + P L I + L Sbjct: 8 VVDLETTGNQLEHDEIIQIGITFVRD-NKISGTYHS-MIRTDLEIPPFIQALTSIEETML 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F I + ++ ++ ++AHN FD+ FI ++ N P +++DTL + Sbjct: 66 EQAPYFHEIADDIYE--QLKDCIFVAHNVDFDLNFIKKAFEKSNIH-FKPKKVLDTLELF 122 Query: 131 RRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLL 167 + P+ ++ L+ L + I T +HR+ A ++L+ Sbjct: 123 KIAFPTEKSYQLSELANAHNIPLTNAHRADEDATTTAYLM 162 >gi|86149218|ref|ZP_01067450.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596976|ref|ZP_01100212.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|218562107|ref|YP_002343886.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840576|gb|EAQ57833.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190665|gb|EAQ94638.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112359813|emb|CAL34600.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315928220|gb|EFV07537.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930011|gb|EFV09154.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 253 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 9/145 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 + DIE+TG SK + I+EIGAV++ + + R FQ F+ K P+ + +L GIT E Sbjct: 74 IVDIESTGGVSKGE-ILEIGAVKIQNSKEIGR-FQSFV---KVKEIPKNITELTGITYEM 128 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ S + + S+F F +++ ++AHN +FD FI+ L L RI T+ Sbjct: 129 VENASSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILLNRRIC-TIEF 185 Query: 130 ARRKHPSSRNDLNSLCKRYGITISH 154 A+ S + L L + G+ H Sbjct: 186 AQCCIESPKYKLEVLKEFLGVENMH 210 >gi|254516595|ref|ZP_05128654.1| ribonuclease T [gamma proteobacterium NOR5-3] gi|219675018|gb|EED31385.1| ribonuclease T [gamma proteobacterium NOR5-3] Length = 209 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 25/201 (12%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NG 52 M K++ R ++ D+ET G S D I+E+ A + +D + + T + P G Sbjct: 1 MAMKSRFRGFLPVIIDMETGGFSSSTDAILELAATIIRMDDSGHVAVHETHSFNVAPFEG 60 Query: 53 RKNSPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVG 104 AL GI E +K + + +F +Q A + HNA FD G Sbjct: 61 ANIEQSALDFTGIDPWHPFREAHSEKDALAELFQVVRREIRDQECNRAILVGHNAHFDAG 120 Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+NA ++R I ++P P DT +++ + + L C GI + H A Sbjct: 121 FLNAAVERCEIKRNPFHPFSHFDTATLSGLAY--GQTVLAKSCLEAGIPFDNEQAHSAAY 178 Query: 163 DSHLLSDVYIKM-----MVGG 178 D+ ++++ + M+GG Sbjct: 179 DAERTAELFCSIVNRWQMLGG 199 >gi|82543982|ref|YP_407929.1| ribonuclease T [Shigella boydii Sb227] gi|194434706|ref|ZP_03066959.1| ribonuclease T [Shigella dysenteriae 1012] gi|123559690|sp|Q321A7|RNT_SHIBS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|81245393|gb|ABB66101.1| RNase T [Shigella boydii Sb227] gi|194417044|gb|EDX33160.1| ribonuclease T [Shigella dysenteriae 1012] gi|320186326|gb|EFW61062.1| Ribonuclease T [Shigella flexneri CDC 796-83] gi|332093985|gb|EGI99038.1| ribonuclease T [Shigella dysenteriae 155-74] gi|332096070|gb|EGJ01075.1| ribonuclease T [Shigella boydii 3594-74] Length = 215 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112 I D D+ + S + + F A +AHNA FD F+ A +R Sbjct: 80 I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMIAAAERAS 137 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++P P DT ++A + L+ C+ G+ H AL D+ + ++ Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195 Query: 173 KMM 175 +++ Sbjct: 196 EIV 198 >gi|22125847|ref|NP_669270.1| ribonuclease T [Yersinia pestis KIM 10] gi|45441960|ref|NP_993499.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001] gi|149365707|ref|ZP_01887742.1| ribonuclease T [Yersinia pestis CA88-4125] gi|218929473|ref|YP_002347348.1| ribonuclease T [Yersinia pestis CO92] gi|229837906|ref|ZP_04458065.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895067|ref|ZP_04510244.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A] gi|229898469|ref|ZP_04513615.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. India 195] gi|229902309|ref|ZP_04517429.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516] gi|24638167|sp|Q8ZE08|RNT_YERPE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|21958778|gb|AAM85521.1|AE013798_8 RNase T, degrades tRNA [Yersinia pestis KIM 10] gi|45436823|gb|AAS62376.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001] gi|115348084|emb|CAL21010.1| ribonuclease T [Yersinia pestis CO92] gi|149292120|gb|EDM42194.1| ribonuclease T [Yersinia pestis CA88-4125] gi|229680644|gb|EEO76740.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516] gi|229688513|gb|EEO80583.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. India 195] gi|229694272|gb|EEO84319.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701955|gb|EEO89977.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A] gi|320015036|gb|ADV98607.1| ribonuclease T [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 215 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++++D ++EI AV L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF ++ A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D+ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|300934175|ref|ZP_07149431.1| putative exonuclease [Corynebacterium resistens DSM 45100] Length = 214 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 11/112 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+ D+ETTGL+ KN RIIE+ + + D N Q +L S L GIT+ Sbjct: 18 IIIDVETTGLEPKNHRIIEVATLTVRDAQPINS--QRWLLNPEDHISEFITDLTGITNAH 75 Query: 70 LKDKPSFSSIFSEFWDFFNE---------QNAEWIAHNAKFDVGFINAELQR 112 + P+F S+ E N Q + HN FD F+ EL R Sbjct: 76 VAKCPTFRSVAEEIMSVLNPAGEHGSDTGQAPILVGHNVAFDYSFLQHELLR 127 >gi|288934625|ref|YP_003438684.1| exonuclease RNase T and DNA polymerase III [Klebsiella variicola At-22] gi|290508826|ref|ZP_06548197.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55] gi|288889334|gb|ADC57652.1| Exonuclease RNase T and DNA polymerase III [Klebsiella variicola At-22] gi|289778220|gb|EFD86217.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55] Length = 219 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 29/168 (17%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D TN L R +P+A+ +H IT+E + Sbjct: 4 VIDTETCGLQGG---IVEIASVDIVDGRITNPMSH--LVRPDRPITPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP I + + W +AHNA FD +R+ P I T+ + Sbjct: 59 ADKPWIEEIIPHY------LGSPWYVAHNASFD--------RRVL--PEMSGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDV 170 ARR P + L K + ++ HR+ + + + LL D+ Sbjct: 103 ARRLWPGIKYSNMGLYKSRKLNVATPPGLHHHRALYDCYITAALLLDI 150 >gi|332686697|ref|YP_004456471.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius ATCC 35311] gi|332370706|dbj|BAK21662.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius ATCC 35311] Length = 924 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 5/128 (3%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG+D DRII+ G V L++ + + PN R + L GI++ + Sbjct: 9 VVDLETTGVDPTVDRIIQFGCV-LIENGEIVSHIGTDVNPN-RIIPKQIQHLTGISNARV 66 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F I ++ + ++AHN FD F++ EL R PL IDT+ +A Sbjct: 67 QKAPYFEDIAIMIFNLLT--DTIFVAHNVHFDYRFLSHELVRCGLPPLTIDA-IDTVELA 123 Query: 131 RRKHPSSR 138 + P+ R Sbjct: 124 QIFLPTER 131 >gi|229816213|ref|ZP_04446523.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM 13280] gi|229808221|gb|EEP44013.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM 13280] Length = 977 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 62/217 (28%), Positives = 96/217 (44%), Gaps = 27/217 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 IV D ETTGL ++ +IEI A L +R F F+ P+G PE + KL IT+ Sbjct: 48 IVLDTETTGLSHRDSELIEIAAARLRGREIVDR-FDTFVKPSGL--IPEEITKLTSITNV 104 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTL 127 + PS + +F +AHNA FD GFI D S I ID+L Sbjct: 105 DVAHAPSAVDAVASLAEFVG--GCPVVAHNAAFDRGFIEQV-----PGGADVSDIWIDSL 157 Query: 128 SIARRKHPS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +++R P + + L + + +G ++SHR+ D L V+ ++ G + + G Sbjct: 158 ALSRIALPRLASHKLAVMAELFGCESVSHRAN----ADVEALCGVWRILLCGLADLPAGL 213 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222 R + VP +P+F+ + EE D Sbjct: 214 M----RRLADMHPDVP-----WSYRPIFSFLAAEEPD 241 >gi|148546369|ref|YP_001266471.1| ribonuclease T [Pseudomonas putida F1] gi|166200017|sp|A5VZH7|RNT_PSEP1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|148510427|gb|ABQ77287.1| RNAse T [Pseudomonas putida F1] gi|313497451|gb|ADR58817.1| Ribonuclease T [Pseudomonas putida BIRD-1] Length = 224 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 29/187 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-----------NGRKNSPE 58 +V D+ET G +S D ++EI AV + K FL P G P Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTIGMDEKG------FLFPEHTYFHRVEPFEGANIEPA 85 Query: 59 ALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAEL 110 AL+ GI D L+ S S ++ + + + A + HN+ FD+GF+NA + Sbjct: 86 ALEFTGIKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAV 145 Query: 111 QR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 R + ++P P DT ++A + + L C+ I R H A D+ + Sbjct: 146 ARNDLKRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTA 203 Query: 169 DVYIKMM 175 +++ ++ Sbjct: 204 ELFCGIV 210 >gi|109898818|ref|YP_662073.1| DNA polymerase III subunit epsilon [Pseudoalteromonas atlantica T6c] gi|109701099|gb|ABG41019.1| Exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas atlantica T6c] Length = 251 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL+ K D I+ IG V + + Q ++ + +++ +HGIT Sbjct: 61 VALDFETTGLNPKTDSIVSIGLVAMTVKRIRCQEAQHWIIKPDTELKTKSVVIHGITHSD 120 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 + D PSF+ + E Q +AH+ +V F+N+ L+ I ++ + P IDT++ Sbjct: 121 VADAPSFNRVLDELLQHL--QGKVVVAHHKDIEVRFLNSALKHYIGEEIVFPC--IDTMA 176 Query: 129 IARR 132 + R Sbjct: 177 LEAR 180 >gi|291456364|ref|ZP_06595754.1| exonuclease, DNA polymerase III, epsilon subunit family [Bifidobacterium breve DSM 20213] gi|291381641|gb|EFE89159.1| exonuclease, DNA polymerase III, epsilon subunit family [Bifidobacterium breve DSM 20213] Length = 235 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 15/163 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITD 67 + D+ETTG I EIGAV + ++ Q+ LCP R+ + L GITD Sbjct: 35 VALDLETTGFYPNRCAITEIGAVRVRGGRVVDQFQQLINPLCPIPRQIT----ALTGITD 90 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEW-----IAHNAKFDVGFINAELQRINKDPLDPSR 122 + D + +F + + NA + HN FD+ F++ + I + Sbjct: 91 AMVADHDPIDGVLPQFISWLADSNAAAETEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD 150 Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDS 164 DT+ I+R P S + L L R+G I+ +H AL D+ Sbjct: 151 -YDTMQISRALFPKQSHHRLADLIVRFG--IADNEEHRALSDA 190 >gi|332312340|gb|EGJ25435.1| ATP-dependent helicase [Listeria monocytogenes str. Scott A] Length = 931 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 1 MIRKNKMRKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + + R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P Sbjct: 1 MEQMKQKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAF 57 Query: 60 LK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ++ L GI+ + +K+ P F + + ++ ++AHN FD F+ E+ R L Sbjct: 58 IQELTGISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-L 114 Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + +DT+ +AR +P L L + + H H A D+ + +D Sbjct: 115 GKMKKLDTVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 164 >gi|314936410|ref|ZP_07843757.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis subsp. hominis C80] gi|313655029|gb|EFS18774.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis subsp. hominis C80] Length = 905 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 8/160 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG ++D II+IG + D +K + T+ + + P L I + L Sbjct: 8 VVDLETTGNQLEHDEIIQIGITFVRD-NKISGTYHS-MIRTDLEIPPFIQALTSIEETML 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F I + ++ ++ ++AHN FD+ FI ++ N P +++DTL + Sbjct: 66 EQAPYFHEIADDIYE--QLKDCIFVAHNVDFDLNFIKKAFEKSNIH-FKPKKVLDTLELF 122 Query: 131 RRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLL 167 + P+ ++ L+ L + I T +HR+ A ++L+ Sbjct: 123 KIAFPTEKSYQLSELANAHNIPLTNAHRADEDATTTAYLM 162 >gi|290343478|ref|YP_003494845.1| hypothetical protein OTV1_005 [Ostreococcus tauri virus 1] gi|260160893|emb|CAY39593.1| hypothetical protein OTV1_005 [Ostreococcus tauri virus 1] Length = 446 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 22/184 (11%) Query: 10 IVFDIETTGLD-----------SKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 + +D ET G+ SK D RI+ + AV+ + TF + P G + Sbjct: 9 VAWDTETCGIPKTRVRPTRENLSKFDDARIVSLSAVKFSSRGREIDTFNRIIKPIGYQVG 68 Query: 57 PEALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 A +HGIT E+ ++ F + F EF +F ++ AHN+ FD G I EL RI Sbjct: 69 --ATHIHGITHEYAEEHGVPFKTAFQEFIEFIGDRCNILCAHNSLFDEGIIGHELLRIGL 126 Query: 114 --NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 NKD LD T + +++ SS N +G + H +L D+ VY Sbjct: 127 DPNKDFLDKYIFNCTHEMYKKRFLSSIKLTNLYKDIFGKEFD--NAHNSLADARACGQVY 184 Query: 172 IKMM 175 +M Sbjct: 185 PYLM 188 >gi|163751907|ref|ZP_02159120.1| exonuclease [Shewanella benthica KT99] gi|161328190|gb|EDP99355.1| exonuclease [Shewanella benthica KT99] Length = 227 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 25/168 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVE------LLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 I D+E TGL+ +D+I+ IG + LLD ++ Q + +G A +H Sbjct: 43 IALDLEMTGLNPNHDQILSIGLIPIENNLLLLDKAE-----QKLIKVDGGVGQSAA--IH 95 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI D+ L+D S W +AH+A D+ F+ + + +P+ Sbjct: 96 GILDKHLQDAIDIEEAIS--WFLEKTLGKVLVAHHAPLDINFLQNAMSKTVGEPVKLCA- 152 Query: 124 IDTLSIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDS 164 IDTL++ R RKH + L + RYG+ + + H AL+D+ Sbjct: 153 IDTLAVERRRLLRKHDVLKEGSLRLGACRTRYGLPVY--AAHNALVDA 198 >gi|309805626|ref|ZP_07699668.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] gi|308165064|gb|EFO67305.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] Length = 225 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 16/180 (8%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K +DRII+ G + D K +T+ + P K P A++ L GI+++ Sbjct: 13 VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 70 EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126 Query: 129 IARRKHPSS-----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-MVGGSQIN 182 +A+ P+ ++ N+L ++ HR+ AL+ + +L + K+ M+ + +N Sbjct: 127 LAQIAFPTIPSYKLQDITNTLHIKHA--NPHRADSDALVTAKMLLKIIEKIEMLPTATLN 184 >gi|256421379|ref|YP_003122032.1| exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis DSM 2588] gi|256036287|gb|ACU59831.1| Exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis DSM 2588] Length = 257 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 14/163 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG + DRIIEI +++ D S + ++ G P + +HGI+DE Sbjct: 12 VIDLETTGTNVATDRIIEIAIIKVFPDKSVQTKVKRIH---PGMPIPPASTAIHGISDED 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127 +KD P+F +E + +N + +N+ +FD+ + E R D R ID Sbjct: 69 IKDCPTFKQCANELRQYM--ENCDLAGYNSNRFDIPLLVEEFLRAGLDFDTKDRRFIDVQ 126 Query: 128 SIARRKHPSSRNDLNSLCKRYG---ITISHRSKHGALLDSHLL 167 I H + L++ K Y +T +H ++ AL +L Sbjct: 127 KIF---HLMEKRTLSAAYKFYCDKDLTNAHSAEADALATYEIL 166 >gi|157370439|ref|YP_001478428.1| ribonuclease T [Serratia proteamaculans 568] gi|157322203|gb|ABV41300.1| ribonuclease T [Serratia proteamaculans 568] Length = 226 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET G ++K D ++EI AV L +D + + + T + P G PEAL +G Sbjct: 31 VVIDIETAGFNAKTDALLEIAAVTLKMDEDGWLQQDETLHFHVEPFEGANLQPEALAFNG 90 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF ++ A +AHNA FD F+ A +R + Sbjct: 91 IDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAAAERASLK 150 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C I H AL D+ + ++ ++ Sbjct: 151 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAADIPFDSAQAHSALYDTEQTAQLFCEL 208 Query: 175 M 175 + Sbjct: 209 V 209 >gi|254233206|ref|ZP_04926532.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis C] gi|124602999|gb|EAY61274.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis C] Length = 329 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 +P F+ I E D + +AHN FD F+ AE + + P+D ++ T+ + Sbjct: 75 DGQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L +G + + H A D +L+ + + Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDVRVLTGILAAAL 175 >gi|291513942|emb|CBK63152.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Alistipes shahii WAL 8301] Length = 255 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 13/112 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 I FD+ETTG+D+ DRI+EI V+++ + +KT R L P G EA +HGI Sbjct: 10 IFFDLETTGVDTARDRIVEISMVKVMPDGEEITKTRR-----LNP-GMHIPEEASAIHGI 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 TD+ ++D P+F+ + F + ++ N+ +FD+ + E R D Sbjct: 64 TDDDVRDCPTFAQVARSLEQFI--RGCDFGGFNSNRFDLPVLVEEFLRAGVD 113 >gi|323497526|ref|ZP_08102544.1| putative exonuclease [Vibrio sinaloensis DSM 21326] gi|323317609|gb|EGA70602.1| putative exonuclease [Vibrio sinaloensis DSM 21326] Length = 238 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 12/162 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGLD+++D I+ +G VE+ + T Q F N + PE ++ IT + Sbjct: 52 LVLDLETTGLDAESDLILSMGWVEISNGVIDLSTAQHFYLSNESQIKPETAVINHITPQM 111 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---RINKDPLDPSRIIDT 126 L+D S + ++ Q +AH+ + FI L +IN PL +DT Sbjct: 112 LEDGISIHDAMNALFEV--AQGKVLVAHSCSVENSFIQRYLSYRFQINAVPL---MWLDT 166 Query: 127 LSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDS 164 L I ++ + N D++ R + +H AL+D+ Sbjct: 167 LCIEKKLARAINNHQDLDVSLGATRERYQLPEYIEHNALMDA 208 >gi|254443961|ref|ZP_05057437.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] gi|198258269|gb|EDY82577.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] Length = 220 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 11/171 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67 + FD+ETTGL K + I +I V L +F ++ P K PE + KL + D Sbjct: 8 VAFDLETTGLRYKQEEITQIAGVRLGGVIMNVEDSFCTYVNPG--KPIPENIQKLTRVRD 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126 E +KD P F D+ +A H+ +FD FI + R R IDT Sbjct: 66 EDVKDAPKPLEALQAFSDWVG--DATLFGHDIYRFDFNFIR-KYARQEGVETRTVRFIDT 122 Query: 127 LSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + I P RN L+ + +R +S +H A D+ LL+ +Y ++ Sbjct: 123 MDIFEVMWPDFSRLRNSLDDIAERLSAGLSSMRRHDAQSDAILLAHIYQRI 173 >gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium JCVIHMP022] gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium JCVIHMP022] Length = 328 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL+ ++ DR IEIG V + + + + A +H I+ Sbjct: 19 VVDFETTGLNPARGDRAIEIGLVHVAPDGTLEDEHETLIRVH---RDIGAQWIHHISAVE 75 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 L P F I E D + ++AHN FD F+ +E +R+ D P++ ++ T+ Sbjct: 76 LIHAPEFEGIARELRDLLAGRV--FVAHNVAFDSKFLLSEYRRLGADIPVNSHTMLCTMK 133 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R L C+ +G I + H AL D+H + + ++M Sbjct: 134 LSRSL--IGVGSLADCCREFG--IDNEDAHSALSDAHATALLLGRLM 176 >gi|317051245|ref|YP_004112361.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] gi|316946329|gb|ADU65805.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] Length = 206 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 9/170 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ETTGLD +D II IGAV + + T+ ++F P ++ E++K+H + Sbjct: 32 VSFDCETTGLDVHHDEIISIGAVRIRGNQILTSEKLELFFNPQ-QEMRVESIKIHHLLTC 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D +F +F N + + +FDV +N L+ + L P+R I+ Sbjct: 91 DLVDGVPLEEGIRQFLNFIG--NRPLVGYYLEFDVAMVNRVLKPMLGITL-PNRQIEVSG 147 Query: 129 IARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + K P DL + + + +KH AL D+ + + +Y+K+ Sbjct: 148 LYYDKKIAAIPQGNVDLRFDSIMHDLDLPPFAKHDALGDAIMTAMMYVKL 197 >gi|261879422|ref|ZP_06005849.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella bergensis DSM 17361] gi|270333990|gb|EFA44776.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella bergensis DSM 17361] Length = 287 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 6/128 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+FD+ETTGLD DRII+I +++ R +F+ P + P +L ITD+ Sbjct: 10 IIFDLETTGLDLATDRIIQISYIKVDPQGNEERK-SLFVNPE-KPIPPFVQELTHITDDM 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127 +KD P+F I + F ++ N+ +FDV + E R D R+ID Sbjct: 68 VKDAPTFKQIAKSLQETF--AGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFQRCRLIDAQ 125 Query: 128 SIARRKHP 135 +I + P Sbjct: 126 NIFHKMEP 133 >gi|270293052|ref|ZP_06199263.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus sp. M143] gi|270279031|gb|EFA24877.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus sp. M143] Length = 157 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 10/159 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + + N+ + + P+ +S +L G+TD Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIENGEIINQ-YATDVNPHEPLDS-HIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P FS + + ++ ++ ++AHN +FD + AE L R +DT+ Sbjct: 64 RRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEGYELRTPR-VDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH 165 +A+ +P + +L LC+ GI + H H AL D+ Sbjct: 120 ELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQ 156 >gi|226227968|ref|YP_002762074.1| exonuclease [Gemmatimonas aurantiaca T-27] gi|226091159|dbj|BAH39604.1| exonuclease [Gemmatimonas aurantiaca T-27] Length = 323 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 12/102 (11%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-----FLCPNGRKNSPEALK 61 MR +V D+ETTGLD+ D IIE GAV D+ R + V + GR EA Sbjct: 47 MRGLVVDVETTGLDTARDVIIEFGAVP-FDFDGEGRVYTVHPPLSYFEDPGRPIPAEASA 105 Query: 62 LHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 + GITD+ ++ K +++ + +Q IAHNA FD Sbjct: 106 ITGITDDDVRGKRIDDAAVLAAL-----DQAVLVIAHNAGFD 142 >gi|152970543|ref|YP_001335652.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330015632|ref|ZP_08308213.1| ribonuclease T [Klebsiella sp. MS 92-3] gi|166228567|sp|A6TA01|RNT_KLEP7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|150955392|gb|ABR77422.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328531231|gb|EGF58076.1| ribonuclease T [Klebsiella sp. MS 92-3] Length = 215 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGF--INAELQRIN 114 I + + + +IF E + A +AHNA FD F AE + Sbjct: 80 INPHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACIAAGMPFDGAQAHSALYDTEQTAQLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|317013348|gb|ADU83956.1| DNA polymerase III subunit epsilon [Helicobacter pylori Lithuania75] Length = 287 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 91/214 (42%), Gaps = 17/214 (7%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GI E Sbjct: 77 DLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFGFKT 187 R S R L+ L +GI +SHR+ AL L + + + + F Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADALASYKLFEICLLNLPSYIKTTMDLIDFSK 249 Query: 188 NEDRFFKEEKK-----TVPNISLLKRDKPLFTRI 216 + K K T P SL +R K LF I Sbjct: 250 CANTLIKRPPKARHQETPPPFSLFERTKGLFNII 283 >gi|291548714|emb|CBL24976.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Ruminococcus torques L2-14] Length = 168 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 17/106 (16%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAV----ELL--DYSKTNRTFQVFLCPNGRKNSPEALKL 62 K+ FDIE+TGLD D I+++ + E+L DY + R K EA K+ Sbjct: 2 KVFFDIESTGLDPVRDEILQLSIINENEEVLFSDYIRLVR----------HKTWNEAEKI 51 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 + I+ E +KDK +F S E F+ Q E IA+NA FD+ F+ A Sbjct: 52 NHISPEMVKDKQTFESRKQEIQKIFD-QATELIAYNANFDISFLKA 96 >gi|15843331|ref|NP_338368.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis CDC1551] gi|148824916|ref|YP_001289670.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis F11] gi|218755494|ref|ZP_03534290.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis GM 1503] gi|254366256|ref|ZP_04982300.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis str. Haarlem] gi|254552821|ref|ZP_05143268.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289763891|ref|ZP_06523269.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis GM 1503] gi|306778600|ref|ZP_07416937.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu002] gi|306786623|ref|ZP_07424945.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu003] gi|306790989|ref|ZP_07429311.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu004] gi|306791307|ref|ZP_07429609.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu005] gi|306795373|ref|ZP_07433675.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu006] gi|306801344|ref|ZP_07438012.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu008] gi|306805555|ref|ZP_07442223.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu007] gi|306969951|ref|ZP_07482612.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu009] gi|13883693|gb|AAK48182.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis CDC1551] gi|134151768|gb|EBA43813.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis str. Haarlem] gi|148723443|gb|ABR08068.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis F11] gi|289711397|gb|EFD75413.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis GM 1503] gi|308328330|gb|EFP17181.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu002] gi|308328734|gb|EFP17585.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu003] gi|308332576|gb|EFP21427.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu004] gi|308340068|gb|EFP28919.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu005] gi|308344057|gb|EFP32908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu006] gi|308347855|gb|EFP36706.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu007] gi|308351843|gb|EFP40694.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu008] gi|308352508|gb|EFP41359.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu009] gi|323717575|gb|EGB26777.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis CDC1551A] Length = 329 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 +P F+ I E D + +AHN FD F+ AE + + P+D ++ T+ + Sbjct: 75 DGQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L +G + + H A D +L+ + + Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDVRVLTGILAAAL 175 >gi|313637226|gb|EFS02740.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria seeligeri FSL S4-171] Length = 921 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 11/162 (6%) Query: 11 VFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 + D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI+ + Sbjct: 1 MVDLETTGNQASREDRIIQFAAC-FVESGKRLETYATFLNPE--KPIPAFIQELTGISPK 57 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P F + ++ ++AHN FD F+ E+ R L + +DT+ Sbjct: 58 DVKDAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLDTVE 114 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 +AR +P L L +G + H H A D+ + +D Sbjct: 115 LARIMYPGIDSYKLQDLSDEFG--LGHDKPHQADSDAEVTAD 154 >gi|293395725|ref|ZP_06640007.1| exodeoxyribonuclease X [Serratia odorifera DSM 4582] gi|291421662|gb|EFE94909.1| exodeoxyribonuclease X [Serratia odorifera DSM 4582] Length = 222 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 23/163 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GLD I+E+ +++++D N +CP+ R EA+ +H IT+ + Sbjct: 5 VIDTETCGLDGG---IVEVASIDIIDGQLAN-PMSDLVCPD-RPIGIEAMAIHHITEAMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP + + + ++AHNA FD G L +N R I T+ +A Sbjct: 60 EGKPRIAVAIGRYMG-----SEYYVAHNAAFDRGV----LPEMN------GRWICTVKLA 104 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH-LLSDVYI 172 R +P + L RY + + + L H L D Y+ Sbjct: 105 RALYPGIKYGNQYL--RYALNLEVQLPQDTTLYPHRALYDCYV 145 >gi|149195052|ref|ZP_01872144.1| Exonuclease [Caminibacter mediatlanticus TB-2] gi|149134765|gb|EDM23249.1| Exonuclease [Caminibacter mediatlanticus TB-2] Length = 293 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 36/188 (19%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-----EALK 61 M+ I+ D ETTG + + DRI + L Y N ++ N P EA+ Sbjct: 1 MKIIILDTETTG-NKQEDRICQ------LSYLVLNEDLEIEEIHNELVKPPIPISYEAMA 53 Query: 62 LHGITDEFLKDKPS--FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +H IT+E ++DKP F++ + + + +N + HN++FD L+ + K+ + Sbjct: 54 VHHITNEMVEDKPQIKFTNSYKRLKELNSPENI-IVIHNSEFD-------LEMLRKEGFN 105 Query: 120 P-SRIIDTLSIARRKHPSSRNDLN-------------SLCKRYGITISHRSKHGALLDSH 165 P ++IDT + + P + L +CK+Y ITI+ G ++ + Sbjct: 106 PFFKLIDTFRVLKHILPDGKFGLQYNRYALGLYKKEKDICKKYNITINAHDALGDVVVLY 165 Query: 166 LLSDVYIK 173 LL + +K Sbjct: 166 LLFEYILK 173 >gi|322388190|ref|ZP_08061794.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus infantis ATCC 700779] gi|321140862|gb|EFX36363.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus infantis ATCC 700779] Length = 816 Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 10/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ R +S +L G+TD Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIED-GEIVEQYATDVNPHERLDS-HIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + ++ ++ ++AHN +FD + AE L R IDT+ Sbjct: 64 KRLAKAPEFSQVAEKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEGYELRTPR-IDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A+ +P + +L LC+ GI + H AL D+ +++++ M Sbjct: 120 ELAQIFYPQLEKYNLGILCQELGIPLEQ--AHSALSDAQATAELFLCM 165 >gi|307565674|ref|ZP_07628146.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A] gi|307345619|gb|EFN90984.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A] Length = 892 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 17/141 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-------GRKNSPEALKL 62 +VFD ETTGLD ND IIEI A+++ + + +T +++ + G K++P L Sbjct: 511 VVFDTETTGLDVFNDDIIEISAIKIRNGKQIGKTLDLYIYTDKTILPKLGIKDNP----L 566 Query: 63 HGITDEFLKDKP--SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + I +E L + +EF F N+ +AHN +D ++ L+R D L+ Sbjct: 567 YEIYNEKLNSGELINIKEALNEFLKF--ADNSILMAHNINYDYHILDNCLRRYTGDNLNN 624 Query: 121 S--RIIDTLSIARRKHPSSRN 139 + D+L I R PS R+ Sbjct: 625 YNFKYFDSLKIIRLLEPSLRS 645 >gi|307297299|ref|ZP_07577105.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916559|gb|EFN46941.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 185 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 10/172 (5%) Query: 7 MRKI--VFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62 M+KI V D ETTG + DRI+EI A+ + N +FQ + P + + + Sbjct: 1 MKKIYLVIDTETTGSSPLEGDRILEIAAIPVYGNKILHNLSFQSLVNPLVMIPA-QITGI 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HG+ +E + D+P+ + +F F ++ A + HN D+ F + + PL + Sbjct: 60 HGLKNEDVLDEPTMAEVFPRFRNYVG--GATIVGHNIVNDMTFFDIASKETGILPL-ANN 116 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ IA L S+ KR + I H A+ D+ + + V++ + Sbjct: 117 YIDTIDIAHEVFSEGPYGLKSIAKR--LRIRDVPTHRAMDDARVTAKVFLAL 166 >gi|294636395|ref|ZP_06714781.1| ribonuclease T [Edwardsiella tarda ATCC 23685] gi|291090340|gb|EFE22901.1| ribonuclease T [Edwardsiella tarda ATCC 23685] Length = 221 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+ + ++EI AV L + +T++ + P G SPEAL +G Sbjct: 20 VVIDVETAGFDANRNALLEIAAVTLRMNDAGWLETDQCLHFHIEPFEGAILSPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF +Q A +AHNA FD F+ A +R + Sbjct: 80 IDPHNPLRGAVSEYEALHAIFKVVRKGIKDQECNRAVIVAHNAHFDHSFLMAAAERAKLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C I H AL D+ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACISAEIPFDSSQAHSALYDTQQTALLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|262379336|ref|ZP_06072492.1| ribonuclease T [Acinetobacter radioresistens SH164] gi|262298793|gb|EEY86706.1| ribonuclease T [Acinetobacter radioresistens SH164] Length = 219 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 24/186 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI + ++ Y + + + + P G +L Sbjct: 23 VVVDVETAGFNAQTDALLEIACIPII-YDEEGKFIPGPAYHAHINPFEGANLDRRSLDFI 81 Query: 64 GITDEF--------LKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR 112 G+ D F +K + IF D EQ +A + HNA FD+GF+ A + R Sbjct: 82 GV-DPFNPMRMAMAEDEKTALKRIFKSIHDIRREQLCTHAILVGHNAHFDLGFLQAAINR 140 Query: 113 I---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 N++P + DT++++ + L C + GI + H AL D+ ++ Sbjct: 141 SGTKNQNPFHSFSVFDTVTLSALMF--GQTVLAKSCLQAGIEFDGKEAHSALYDTQKTAE 198 Query: 170 VYIKMM 175 ++ ++ Sbjct: 199 LFCYIL 204 >gi|46908132|ref|YP_014521.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes serotype 4b str. F2365] gi|46881402|gb|AAT04698.1| ATP-dependent helicase DinG [Listeria monocytogenes serotype 4b str. F2365] Length = 928 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +K+ P F + + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +AR +P L L + + H H A D+ + +D Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161 >gi|262044634|ref|ZP_06017689.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038035|gb|EEW39251.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 215 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGF--INAELQRIN 114 I + + + +IF E + A +AHNA FD F AE + Sbjct: 80 INPHDPQLGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACIAAGMPFDGAQAHSALYDTEQTAQLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|254827216|ref|ZP_05231903.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165] gi|258599599|gb|EEW12924.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165] Length = 928 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +K+ P F + + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +AR +P L L + + H H A D+ + +D Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161 >gi|47096482|ref|ZP_00234074.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a F6854] gi|254899404|ref|ZP_05259328.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes J0161] gi|254912457|ref|ZP_05262469.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818] gi|254936784|ref|ZP_05268481.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900] gi|284802344|ref|YP_003414209.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5578] gi|284995486|ref|YP_003417254.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5923] gi|47015135|gb|EAL06076.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a F6854] gi|258609379|gb|EEW21987.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900] gi|284057906|gb|ADB68847.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5578] gi|284060953|gb|ADB71892.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5923] gi|293590439|gb|EFF98773.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818] Length = 928 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +K+ P F + + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +AR +P L L + + H H A D+ + +D Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 161 >gi|320668677|gb|EFX35482.1| ribonuclease T [Escherichia coli O157:H7 str. LSU-61] Length = 215 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDITLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112 I D D+ + S + + F A +AHNA FD F+ A +R Sbjct: 80 I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERAS 137 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++P P DT ++A + L+ C+ G+ H AL D+ + ++ Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFC 195 Query: 173 KMM 175 +++ Sbjct: 196 EIV 198 >gi|255320382|ref|ZP_05361566.1| ribonuclease T [Acinetobacter radioresistens SK82] gi|255302577|gb|EET81810.1| ribonuclease T [Acinetobacter radioresistens SK82] Length = 215 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 24/186 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI + ++ Y + + + + P G +L Sbjct: 19 VVVDVETAGFNAQTDALLEIACIPII-YDEEGKFIPGPAYHAHINPFEGANLDRRSLDFI 77 Query: 64 GITDEF--------LKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR 112 G+ D F +K + IF D EQ +A + HNA FD+GF+ A + R Sbjct: 78 GV-DPFNPMRMAMAEDEKTALKRIFKSIHDIRREQLCTHAILVGHNAHFDLGFLQAAINR 136 Query: 113 I---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 N++P + DT++++ + L C + GI + H AL D+ ++ Sbjct: 137 SGTKNQNPFHSFSVFDTVTLSALMF--GQTVLAKSCLQAGIEFDGKEAHSALYDTQKTAE 194 Query: 170 VYIKMM 175 ++ ++ Sbjct: 195 LFCYIL 200 >gi|224500250|ref|ZP_03668599.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes Finland 1988] gi|254831500|ref|ZP_05236155.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 10403S] Length = 928 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +K+ P F + + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +AR +P L L + + H H A D+ + +D Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161 >gi|261335679|emb|CBH18673.1| exonuclease, putative [Trypanosoma brucei gambiense DAL972] Length = 366 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 10/137 (7%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-------DYSKTNRTFQVFLCPNGRKN 55 R + + D+ETTG+ D II I VELL + + R+F + P +K Sbjct: 97 RLQPLSAVCIDVETTGIAPTKDEIISIAVVELLFGAAGHNQWVLSGRSFHRLVKPT-KKV 155 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRIN 114 S A ++H +T + L+ +P F++I + F ++ + + A D+ + + + Sbjct: 156 SSSAYRVHKLTSKVLERQPPFAAILPDLAAFLSDVRSGSTS-TAAGDIHYKGPDGTNNVE 214 Query: 115 KDPLDPSRIIDTLSIAR 131 PL R T+S++R Sbjct: 215 CVPLSSGRAAATVSVSR 231 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Query: 95 IAHNAKFDVGFINAELQRINKDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152 IAHNA FD F+ R + + S + T+S+ R +P +L C GI Sbjct: 266 IAHNAAFDRNFLYQSALRNGWEVVWDKQSPLTCTMSMFRALYPECPTNLTKACSLAGIDA 325 Query: 153 SHRS-KHGALLDSHLLSDVYIKM 174 + R +H AL D+ L ++I + Sbjct: 326 AGREDRHDALQDAQLCGHLFIYL 348 >gi|184200503|ref|YP_001854710.1| DNA polymerase III subunit epsilon [Kocuria rhizophila DC2201] gi|183580733|dbj|BAG29204.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila DC2201] Length = 232 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 17/172 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG D + RI+ V + + ++ +L G + EA +HG++ + Sbjct: 12 RACFDLETTGRDPQQARIVTASVVLVSPAGDVLQEWE-WLADPGVEIPEEAAAVHGVSTD 70 Query: 69 FLK--DKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + +P S + + FW + +A NA +D+ + E +R +P Sbjct: 71 RARAEGRPVAEVAAELSEVLAGFW----REGVPVLAFNAAYDLTVLTRETERHGLPAPEP 126 Query: 121 SRIIDTLSIARRKHPSSRN--DLNSLCKRYGITI--SHRSKHGALLDSHLLS 168 ++D + ++ H R L +LC+ YG+ + +H S AL L + Sbjct: 127 FPVLDPFVLNKQVHRYRRGKRTLGALCEEYGVVLDAAHTSAEDALATERLAA 178 >gi|15602853|ref|NP_245925.1| ribonuclease T [Pasteurella multocida subsp. multocida str. Pm70] gi|13431828|sp|P57896|RNT_PASMU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|12721315|gb|AAK03072.1| Rnt [Pasteurella multocida subsp. multocida str. Pm70] Length = 220 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 83/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 ++ D+ET G ++K D ++E+ A+ + ++T + P N +PE+L+ +G Sbjct: 24 VIIDVETAGFNAKTDALLELAAITVKMNEDGLLVPDQTCHFHIEPFAGANINPESLQFNG 83 Query: 65 I-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR--IN 114 I L+ S + +E + + Q + +AHNA FD F+ A +R + Sbjct: 84 IDIHNPLRGAVSETVAITELFKMVRKAQKAADCQRSIIVAHNAAFDQSFLMAAAERTGVK 143 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P + DT +++ + L C+ I + H AL D+ ++++ M Sbjct: 144 RNPFHPFGMFDTATLSGFMF--GQTVLVKACQAAQIAFDGKQAHSALYDTERTAELFCYM 201 Query: 175 M 175 + Sbjct: 202 V 202 >gi|330502360|ref|YP_004379229.1| ribonuclease T [Pseudomonas mendocina NK-01] gi|328916646|gb|AEB57477.1| ribonuclease T [Pseudomonas mendocina NK-01] Length = 224 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 31/188 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-----------GRKNSP 57 +V D+ET G +S D ++EI A + +D S FL P+ G Sbjct: 32 VVVDVETGGFNSATDALLEIAATTIAMDESG-------FLYPDHTHFFRIEPFEGANIEQ 84 Query: 58 EALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAE 109 AL+ GI D L+ S E + + + A + HN+ FD+GF+NA Sbjct: 85 AALEFTGIKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAA 144 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + R I ++P P DT ++A + + L C+ GI + H A D+ Sbjct: 145 VARCGIKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIEFDGKEAHSARYDTEKT 202 Query: 168 SDVYIKMM 175 ++++ ++ Sbjct: 203 AELFCGIV 210 >gi|283833269|ref|ZP_06353010.1| ribonuclease T [Citrobacter youngae ATCC 29220] gi|291070906|gb|EFE09015.1| ribonuclease T [Citrobacter youngae ATCC 29220] Length = 215 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF E A +AHNA FD F+ A +R + Sbjct: 80 IDPNNPLRGAVSEYDALHAIFKMVRKGIKESGCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLS--LGQTVLSKACLAAGMEFDGNQAHSALYDTERTAVLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|281355577|ref|ZP_06242071.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC BAA-548] gi|281318457|gb|EFB02477.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC BAA-548] Length = 268 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 6/130 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIE+TG+ + DRI+EI +++ T T + L P P A +HGI+D Sbjct: 12 VVFDIESTGVMPQRDRIVEIAVLKIFPDGHTQNTVRR-LNPE-MPIPPGATAIHGISDAD 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-PLDPSRIIDTL 127 + D P+F I + + + ++ + +N FD+ + AE +R +D ++ID Sbjct: 70 VADCPTFLLIAEKLFRYI--EDCDLAGYNITGFDIPMLEAEFKRAGFTFKVDDRKVIDAY 127 Query: 128 SIARRKHPSS 137 +I + +P + Sbjct: 128 NIFCKLYPRT 137 >gi|15610847|ref|NP_218228.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis H37Rv] gi|148663576|ref|YP_001285099.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis H37Ra] gi|167970866|ref|ZP_02553143.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis H37Ra] gi|306778068|ref|ZP_07416405.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu001] gi|306974185|ref|ZP_07486846.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu010] gi|307081893|ref|ZP_07491063.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu011] gi|307086506|ref|ZP_07495619.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu012] gi|2960135|emb|CAA18033.1| PROBABLE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium tuberculosis H37Rv] gi|148507728|gb|ABQ75537.1| DNA polymerase III subunit epsilon DnaQ [Mycobacterium tuberculosis H37Ra] gi|308213597|gb|EFO72996.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu001] gi|308356458|gb|EFP45309.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu010] gi|308360405|gb|EFP49256.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu011] gi|308364101|gb|EFP52952.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis SUMu012] Length = 329 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 +P F+ I E D + +AHN FD F+ AE + + P+D ++ T+ + Sbjct: 75 DGQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L +G + + H A D +L+ + + Sbjct: 131 ARRLQLGVDNLRLETLAAHWG--VPQQRPHDAFDDVRVLTGILAAAL 175 >gi|304397653|ref|ZP_07379530.1| ribonuclease T [Pantoea sp. aB] gi|304354825|gb|EFM19195.1| ribonuclease T [Pantoea sp. aB] Length = 222 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 22/195 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A+ L +D + + ++T + P G PEAL G Sbjct: 20 VVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD+ F++A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAAGMEFDSTQAHSALYDTQQTATLFCEL 197 Query: 175 M-----VGGSQINFG 184 + +GG + F Sbjct: 198 VNRWKRLGGWPLPFA 212 >gi|171743164|ref|ZP_02918971.1| hypothetical protein BIFDEN_02291 [Bifidobacterium dentium ATCC 27678] gi|283455845|ref|YP_003360409.1| DNA polymerase III, subunit epsilon [Bifidobacterium dentium Bd1] gi|171278778|gb|EDT46439.1| hypothetical protein BIFDEN_02291 [Bifidobacterium dentium ATCC 27678] gi|283102479|gb|ADB09585.1| DNA polymerase III, epsilon subunit [Bifidobacterium dentium Bd1] Length = 212 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 40/179 (22%) Query: 10 IVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEAL-KLHGIT 66 ++ D ETTGL + IIEIGA+ + ++ R F+ + P ++ PE + +L GI+ Sbjct: 26 VMLDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDP--QRPLPEFISRLTGIS 83 Query: 67 DEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 D L+DKP+ + F + ++ + IAHNA+FD+GF++A Sbjct: 84 DGMLRDKPTADAAMLRFHQWLDDVWPTGKPLTIIAHNAEFDIGFLDA------------- 130 Query: 122 RIIDTLSIARRKHPSSRN--DLNSLC-KRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 A R H N D LC K ++ R +H H +SD+ + +G Sbjct: 131 --------AERAHDPDANEFDCRWLCTKEMSWELNPRKRH------HRVSDLIVDYRIG 175 >gi|170768829|ref|ZP_02903282.1| ribonuclease T [Escherichia albertii TW07627] gi|170122377|gb|EDS91308.1| ribonuclease T [Escherichia albertii TW07627] Length = 215 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + IF A +AHNA FD F+ A +R + Sbjct: 80 IDPNDPERGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + L+ C+ G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMEFDSNQAHSALYDTERTAVLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|254852803|ref|ZP_05242151.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503] gi|300763791|ref|ZP_07073788.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017] gi|258606130|gb|EEW18738.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503] gi|300515527|gb|EFK42577.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017] Length = 928 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +K+ P F + + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +AR +P L L + + H H A D+ + +D Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 161 >gi|156933577|ref|YP_001437493.1| exodeoxyribonuclease X [Cronobacter sakazakii ATCC BAA-894] gi|156531831|gb|ABU76657.1| hypothetical protein ESA_01397 [Cronobacter sakazakii ATCC BAA-894] Length = 220 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL ++E+ +V+++D + N + P+ R S +A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---VVEVASVDIIDGAIVN-PMSDLVRPD-RPISHQAMAIHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + + ++W +AHNA FD + P P I T+ + Sbjct: 59 ADKPYIEEVIPRY------HGSQWYVAHNASFDRKVL----------PEMPGEWICTVKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P R L K + + H AL D ++ + + +++M Sbjct: 103 ARRLWPGIRYSNMGLYKSLKLQVETPEGLHHHRALFDCYITAALLLEIM 151 >gi|332534821|ref|ZP_08410645.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332035733|gb|EGI72220.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 207 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 18/193 (9%) Query: 1 MIRKNKM--RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++ KN + R +V D+E TGLD+K I+ + V ++D + L K+ + Sbjct: 15 LLGKNALQQRYLVIDLELTGLDAKQHEIVSVAWV-IIDNQCIKMSKSQHLINKDVKSLAQ 73 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + HGI+D+ + S +SI + + F++ + HNA D F+ L+ N + Sbjct: 74 SPVFHGISDDAIAKGLSLNSILMQLSNHFSD--CILVFHNAMLDWVFLKIALKNANI-TI 130 Query: 119 DPSRIIDTLSIARRK--HPSS--RND---LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P I+DTL I +++ H S+ + D LN+ RY + H H AL D+ +++ Sbjct: 131 RPKLILDTLHIEQKRLLHHSTEIKQDDLTLNACRTRYELPSYH--CHHALTDAQATAEL- 187 Query: 172 IKMMVGGSQINFG 184 ++ QI+ G Sbjct: 188 --LLAQCHQISRG 198 >gi|21230975|ref|NP_636892.1| ribonuclease T [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769021|ref|YP_243783.1| ribonuclease T [Xanthomonas campestris pv. campestris str. 8004] gi|188992135|ref|YP_001904145.1| ribonuclease T [Xanthomonas campestris pv. campestris str. B100] gi|24638163|sp|Q8PAG3|RNT_XANCP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|81305015|sp|Q4UT60|RNT_XANC8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|21112595|gb|AAM40816.1| ribonuclease T [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574353|gb|AAY49763.1| ribonuclease T [Xanthomonas campestris pv. campestris str. 8004] gi|167733895|emb|CAP52101.1| Ribonuclease T [Xanthomonas campestris pv. campestris] Length = 216 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 17/181 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63 +V D+ET G D ++EI V + +D T L P G + P++L++ Sbjct: 27 PVVVDVETGGFDWNKHALLEIACVPIEMDAQGHFFPGETASAHLVPAPGLEIDPKSLEIT 86 Query: 64 GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI + F K +K + +F+ + Q A + HNA FD+ F+NA + R+ Sbjct: 87 GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P + DT+++A + + L + G+ + H A+ D+ + ++ K Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNSADAHSAVYDTEQTARLFCK 204 Query: 174 M 174 + Sbjct: 205 I 205 >gi|307638212|gb|ADN80662.1| DNA polymerase III epsilon subunit [Helicobacter pylori 908] gi|325996805|gb|ADZ52210.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2018] gi|325998398|gb|ADZ50606.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2017] Length = 287 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GIT E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVRGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221 >gi|295106393|emb|CBL03936.1| exonuclease, DNA polymerase III, epsilon subunit family [Gordonibacter pamelaeae 7-10-1-b] Length = 1031 Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 9/149 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG +D + +I A + + + F F+ P G+ + L I DE Sbjct: 48 VVVDTETTGFSFNHDELTQIAAARM-EQGRIVDWFITFVNP-GKPIPEDVAYLTDIHDED 105 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P S SE +F + A+ +AHNA+FD F + + PL + ID+L + Sbjct: 106 VADAPLPSEALSELAEFVGD--AKIVAHNAEFDRTFTT---RHPSGYPLLENTWIDSLDL 160 Query: 130 ARRKHPSSRND-LNSLCKRYGITIS-HRS 156 AR P ++ L L K +G +S HR+ Sbjct: 161 ARIALPRLKSHRLLDLVKAFGAPLSTHRA 189 >gi|226224503|ref|YP_002758610.1| ATP-dependent helicase [Listeria monocytogenes Clip81459] gi|254825606|ref|ZP_05230607.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194] gi|225876965|emb|CAS05674.1| Putative ATP-dependent helicase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293594849|gb|EFG02610.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194] gi|328466248|gb|EGF37405.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 1816] Length = 928 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +K+ P F + + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +AR +P L L + + H H A D+ + +D Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 161 >gi|317014965|gb|ADU82401.1| DNA polymerase III subunit epsilon [Helicobacter pylori Gambia94/24] Length = 287 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GIT E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVRGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221 >gi|16803938|ref|NP_465423.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes EGD-e] gi|224501301|ref|ZP_03669608.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes FSL R2-561] gi|16411352|emb|CAC99977.1| dinG [Listeria monocytogenes EGD-e] Length = 928 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +K+ P F + + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +AR +P L L + + H H A D+ + +D Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161 >gi|329920271|ref|ZP_08277055.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus iners SPIN 1401G] gi|328936316|gb|EGG32764.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus iners SPIN 1401G] Length = 933 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K +DRII+ G + D K +T+ + P K P A++ L GI+++ Sbjct: 13 VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 70 EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126 Query: 129 IARRKHPS 136 +A+ P+ Sbjct: 127 LAQIAFPT 134 >gi|116492274|ref|YP_804009.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Pediococcus pentosaceus ATCC 25745] gi|116102424|gb|ABJ67567.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Pediococcus pentosaceus ATCC 25745] Length = 178 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 5/114 (4%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI + D P+F ++ FF +AHNA FD + L+R + L Sbjct: 50 VQVHGIHQADVSDAPTFPELWPVVKQFFTPDKLV-VAHNATFDNSVLKKTLERYQINRL- 107 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + +DTL ++ +P N LN++C GI + H H AL DS +++ + Sbjct: 108 PYQTLDTLRTSKSFYPDYTNHKLNTICDNLGIDLQHH--HNALDDSRACANILL 159 >gi|312872972|ref|ZP_07733032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2062A-h1] gi|311091494|gb|EFQ49878.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2062A-h1] Length = 933 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K +DRII+ G + D K +T+ + P K P A++ L GI+++ Sbjct: 13 VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 70 EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126 Query: 129 IARRKHPS 136 +A+ P+ Sbjct: 127 LAQIAFPT 134 >gi|301300766|ref|ZP_07206950.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851616|gb|EFK79316.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 929 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 11/167 (6%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITD 67 V D+ETTG +D+II+ D+ ++N+ F L G E KL GI D Sbjct: 9 VVDLETTGPKQDGSDKIIQFSC----DFVQSNKIVNHFSTLINPGMPIPVEVKKLTGIKD 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++ P F + + QN ++AHN FD F+++EL+R L+ ++DT+ Sbjct: 65 KDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELELP-MMDTV 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + +P+ + +Y + +SH H A D+ +++ I + Sbjct: 122 QLTQIIYPTLVSYRLIDISKY-LQLSHIHPHKADSDTKATAELLINL 167 >gi|169830753|ref|YP_001716735.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis audaxviator MP104C] gi|169637597|gb|ACA59103.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis audaxviator MP104C] Length = 921 Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 19/190 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 +V D+ETTGLD + D I+E+G V + D K F + P+ + P +K L G+ D Sbjct: 6 VVLDLETTGLDPQADEIVEVGLVRVED-GKPGAVFHALVRPS--RPLPARIKSLTGLDDA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L ++P +S + F N + H+ FD+ F+ ++ DT+ Sbjct: 63 DLAERPDWSEVRPAVTAFLG--NEPVVGHHVHFDLAFLERHAG------YRATQAYDTVD 114 Query: 129 IAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +AR PS R +L LC + + R H A+ D+ + ++ ++ ++ F Sbjct: 115 LARLVLPGLPSYRLEL--LCAH--LDLPERPGHRAMEDARAAAGLFTALLERFCRLEFTT 170 Query: 186 KTNEDRFFKE 195 + R + Sbjct: 171 QATVHRILSQ 180 >gi|325912075|ref|ZP_08174473.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners UPII 143-D] gi|325476025|gb|EGC79193.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners UPII 143-D] Length = 933 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K +DRII+ G + D K +T+ + P K P A++ L GI+++ Sbjct: 13 VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 70 EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126 Query: 129 IARRKHPS 136 +A+ P+ Sbjct: 127 LAQIAFPT 134 >gi|315653552|ref|ZP_07906472.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195] gi|315488914|gb|EFU78556.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195] Length = 936 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K +DRII+ G + D K +T+ + P K P A++ L GI+++ Sbjct: 16 VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 73 EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 129 Query: 129 IARRKHPS 136 +A+ P+ Sbjct: 130 LAQIAFPT 137 >gi|312875685|ref|ZP_07735686.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2053A-b] gi|311088939|gb|EFQ47382.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2053A-b] Length = 933 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K +DRII+ G + D K +T+ + P K P A++ L GI+++ Sbjct: 13 VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 70 EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126 Query: 129 IARRKHPS 136 +A+ P+ Sbjct: 127 LAQIAFPT 134 >gi|163794470|ref|ZP_02188441.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199] gi|159180194|gb|EDP64717.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199] Length = 458 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 8/169 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I DIETTGLD+ ++ GA+ + K + + L P G ++ +HGITD Sbjct: 14 AIAIDIETTGLDASRAHAVQFGAIPIAKGVLKPDDACEQMLNP-GIPIPSSSIAIHGITD 72 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +++ P+ S ++ +N I H+ FD+ + AE +R D P R + Sbjct: 73 AMVRNAPTLSDVWPNL--VGQWKNRVVIGHSIGFDLTVLAAEAKRKKLDWQKP-RALCVR 129 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A P+ + + L++L + + R++H AL D+ +++ ++ Sbjct: 130 MLATIAAPTLASHSLDALAT--WLNLETRNRHRALGDAEAAGLIFLALI 176 >gi|238755817|ref|ZP_04617148.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473] gi|238705975|gb|EEP98361.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473] Length = 249 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 27/175 (15%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 KM V D ET GLD I+EI +++ +D TN + P+ R S EA+ +H I Sbjct: 29 KMNFRVIDTETCGLDGG---IVEIASLDFIDGEITN-PMSDLVSPD-RPISIEAMAIHHI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+E ++ KP + ++ + + ++AHNA FD G + P I Sbjct: 84 TEEMVEGKPRIAVAVGKY-----QGSPYYVAHNAPFDRGVL----------PEMGGEWIC 128 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITI-----SHRSKHGALLDSHLLSDVYIKMM 175 T +AR +P + L RY + + + H AL D ++ + ++ ++M Sbjct: 129 TYKLARALYPDIKYSNQYL--RYALRLDVTPPADLYPHRALYDCYITAALFQRIM 181 >gi|218548595|ref|YP_002382386.1| exodeoxyribonuclease X [Escherichia fergusonii ATCC 35469] gi|218356136|emb|CAQ88753.1| DNA exonuclease X [Escherichia fergusonii ATCC 35469] gi|324113580|gb|EGC07555.1| exonuclease [Escherichia fergusonii B253] gi|325497013|gb|EGC94872.1| exodeoxyribonuclease X [Escherichia fergusonii ECD227] Length = 220 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D TN L R +P+A+ +H IT+ + Sbjct: 4 VIDTETCGLQGG---IVEIASVDVVDGKITNPMSH--LVRPDRPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ ++W +AHNA FD +R+ P P I T+ + Sbjct: 59 ADKPWIEEVIPHYY------GSDWYVAHNASFD--------RRVL--PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 +R P + +L K + + H AL D ++ + + I +M Sbjct: 103 SRHLWPGIKYSNMALYKSRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|312874151|ref|ZP_07734185.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2052A-d] gi|311090221|gb|EFQ48631.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2052A-d] Length = 933 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K +DRII+ G + D K +T+ + P K P A++ L GI+++ Sbjct: 13 VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 70 EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126 Query: 129 IARRKHPS 136 +A+ P+ Sbjct: 127 LAQIAFPT 134 >gi|259500615|ref|ZP_05743517.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335] gi|259167999|gb|EEW52494.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335] Length = 936 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K +DRII+ G + D K +T+ + P K P A++ L GI+++ Sbjct: 16 VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 73 EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 129 Query: 129 IARRKHPS 136 +A+ P+ Sbjct: 130 LAQIAFPT 137 >gi|149912028|ref|ZP_01900621.1| ribonuclease T [Moritella sp. PE36] gi|149804889|gb|EDM64924.1| ribonuclease T [Moritella sp. PE36] Length = 231 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET G +++ D ++EI A L +D Y K + T + P G AL G Sbjct: 19 VVIDIETAGFNAQTDAMLEIAASILEMDEDGYLKISHTLHFNVEPFEGANLEQAALDFTG 78 Query: 65 I--TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR--I 113 I T+ P +I +E + + A +AHNA FD F++A R I Sbjct: 79 IDPTNPLRGAVPEREAI-TEIYKAVRKGLKDTGCHRAIMVAHNAAFDHAFLSAASNREKI 137 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + L C GI H+ H A D+ ++++ Sbjct: 138 KRNPFHPFATFDTTTLAGLA--VGQTVLAKACVAAGIPFDHKQAHSAKYDTEQTAELFCY 195 Query: 174 MM 175 ++ Sbjct: 196 IV 197 >gi|87121336|ref|ZP_01077226.1| ribonuclease T [Marinomonas sp. MED121] gi|86163493|gb|EAQ64768.1| ribonuclease T [Marinomonas sp. MED121] Length = 216 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 25/185 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +V D+ET G ++K D ++EI A EL + + F N K+ AL+ Sbjct: 14 VVIDVETAGFNNKTDALLEIAASILRMDENGELYIHETIEFNVRPFEGANLEKS---ALE 70 Query: 62 LHGITDEF------LKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQR 112 GI D F + + IFS+ + A + HNA FD GF+NA ++R Sbjct: 71 FTGI-DPFDPERKDVVEAEVLGQIFSKVRKELKSVGCKRAILVGHNAAFDHGFLNAAIER 129 Query: 113 --INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 I ++P P DT S+A + L C+ I S+ H A D+ +++ Sbjct: 130 CDIKRNPFHPFSSFDTASLAGLAF--GQTVLAKACEAAAIPFSNAEAHSAKYDTEKTAEL 187 Query: 171 YIKMM 175 + +++ Sbjct: 188 FCEIV 192 >gi|332653929|ref|ZP_08419673.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae bacterium D16] gi|332517015|gb|EGJ46620.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae bacterium D16] Length = 236 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 22/177 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-------LDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +VFD ET+GLD ND+IIE+ A+ + L + TF P G + L Sbjct: 15 VVFDTETSGLDFDNDQIIELAALRVERTATGGLRIAGKMDTF--IKLPEGETLPENIVSL 72 Query: 63 HGITDEFLKD---KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GITDE L+ +P+ ++ S+ IAHNA+FD F+ L+ +D Sbjct: 73 TGITDERLQTEGVQPAKAA--SQIAKLMQNGPTLMIAHNAQFDACFLRGLLRGQKVGRID 130 Query: 120 PSRIIDTLSIA--RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +D+L++ RR +P + L + Y +T ++ H A+ D L +V M Sbjct: 131 ---WLDSLTVYKDRRAYP---HKLANAIIAYDLTGKVQNSHRAIDDVLALFEVLKAM 181 >gi|302191304|ref|ZP_07267558.1| Rad3-related DNA helicase [Lactobacillus iners AB-1] Length = 933 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K +DRII+ G + D K +T+ + P K P A++ L GI+++ Sbjct: 13 VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 70 EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126 Query: 129 IARRKHPS 136 +A+ P+ Sbjct: 127 LAQIAFPT 134 >gi|298737180|ref|YP_003729710.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8] gi|298356374|emb|CBI67246.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8] Length = 323 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GIT E Sbjct: 113 DLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 168 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 169 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 225 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 226 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 257 >gi|21242321|ref|NP_641903.1| ribonuclease T [Xanthomonas axonopodis pv. citri str. 306] gi|24638164|sp|Q8PM62|RNT_XANAC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|21107753|gb|AAM36439.1| ribonuclease T [Xanthomonas axonopodis pv. citri str. 306] Length = 213 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 19/181 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-----QVFLCPN-GRKNSPEALKLH 63 +V D+ET G D ++EI V + + R F L P G + P++L++ Sbjct: 28 VVVDVETGGFDWNKHALLEIACVPI-EMGADGRFFPGETASAHLVPAPGLEIDPKSLEIT 86 Query: 64 GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI + F K +K + +F+ + Q A + HNA FD+ F+NA + R+ Sbjct: 87 GIVLDHPFRFAKQEKEALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P + DT+++A + + L + G+ + H A+ D+ + ++ K Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 204 Query: 174 M 174 + Sbjct: 205 I 205 >gi|15616807|ref|NP_240019.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681560|ref|YP_002467946.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682118|ref|YP_002468502.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471245|ref|ZP_05635244.1| ribonuclease T [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11387052|sp|P57285|RNT_BUCAI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|25356015|pir||A84952 ribonuclease T [imported] - Buchnera sp. (strain APS) gi|10038870|dbj|BAB12905.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621851|gb|ACL30007.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624403|gb|ACL30558.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085930|gb|ADP66012.1| ribonuclease T [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086501|gb|ADP66582.1| ribonuclease T [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087083|gb|ADP67163.1| ribonuclease T [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087635|gb|ADP67714.1| ribonuclease T [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 221 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET G ++ D ++EI + L L + T + P G + +A+ + Sbjct: 20 VVIDIETAGFNANTDAVLEIAIITLKMDELGWLHKEDTLHFHIEPFKGSIINSDAIAFNK 79 Query: 65 ITDEF------LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113 I D F + +K + SI + + Q +AHNA FD F+ A +QR I Sbjct: 80 I-DPFNPLRGAISEKIAIQSILKKVRNGIKIQGCSRGIVVAHNANFDHNFLMAAIQRVKI 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P P DT +++ + L+ CK G++ + H AL D+ ++++ + Sbjct: 139 KNNPFHPFATFDTAALSGL--VVGQTVLSKACKAIGLSFDNHQAHSALYDTLQTANLFCE 196 Query: 174 MM 175 ++ Sbjct: 197 LV 198 >gi|312871734|ref|ZP_07731822.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 3008A-a] gi|311092676|gb|EFQ51032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 3008A-a] Length = 933 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG K +DRII+ G + D K +T+ + P K P A++ L GI+++ Sbjct: 13 VVDLETTGTQIKQHDRIIQFGCAIIKD-RKITKTYSFLINP--EKTIPRAVENLTGISNQ 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 70 EASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPF-AGKAIDTVE 126 Query: 129 IARRKHPS 136 +A+ P+ Sbjct: 127 LAQIAFPT 134 >gi|163755942|ref|ZP_02163059.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1] gi|161324113|gb|EDP95445.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1] Length = 257 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 82/161 (50%), Gaps = 10/161 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG++ DRI+EI +++ Y N+ + +L E ++HGITD+ + Sbjct: 12 FDLETTGVEVAKDRIVEIAILKV--YPNGNKESKTWLVNPEMPIPAETSEIHGITDDKVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI-IDTLSI 129 ++P+F + E ++ ++++ +N+ +FD+ + EL R + D +++ ID +I Sbjct: 70 NEPTFKELSKEIYNMI--KDSDLAGYNSDRFDIPLLAEELLRADIDFDMKNKVSIDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 H + L++ K Y HGA D++ +V Sbjct: 128 F---HKMEKRTLSAAYKFY-CGKELEGAHGAEADTNATYEV 164 >gi|288800441|ref|ZP_06405899.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] gi|288332654|gb|EFC71134.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] Length = 285 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 11/142 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 +VFD+ETTGLD NDRII+I +++ K R +F+ P +K P+ ++ L IT++ Sbjct: 10 VVFDLETTGLDLVNDRIIQISYIKVHPDGKEERE-NLFINP--QKPIPQEVEALTHITND 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDT 126 +KD P+F+ I + ++ F ++ N+ FD+ + E R S+++D Sbjct: 67 MVKDAPTFAEIAQKLYEKFT--GCDFAGFNSNHFDIPMLAEEFSRAGLSYDFSRSKLVDA 124 Query: 127 LSIARRKHPSSRNDLNSLCKRY 148 I H R +L + K Y Sbjct: 125 QVIF---HKMERRNLAAAYKFY 143 >gi|308185320|ref|YP_003929453.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180] gi|308061240|gb|ADO03136.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180] Length = 287 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GIT E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSTHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221 >gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] Length = 317 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL+ ++ DR IEIG V + + + + A +H I+ Sbjct: 8 VVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIRVH---RDIGAQWIHHISAVE 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 L P F I E D + ++AHN FD F+ +E +R+ D P++ ++ T+ Sbjct: 65 LIHAPEFEGIARELRDLLAGRV--FVAHNVAFDSKFLLSEYRRLGTDIPVNSHTMLCTMK 122 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R L C+ +G I + H AL D+H + + ++M Sbjct: 123 LSRSL--IGVGSLADCCREFG--IDNEDAHSALSDAHATALLLGRLM 165 >gi|254931930|ref|ZP_05265289.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262] gi|293583482|gb|EFF95514.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262] Length = 928 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +K+ P F + + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +AR +P L L + + H H A D+ + +D Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 161 >gi|90961663|ref|YP_535579.1| ATP-dependent helicase DinG [Lactobacillus salivarius UCC118] gi|90820857|gb|ABD99496.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius UCC118] Length = 929 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 11/167 (6%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITD 67 V D+ETTG +D+II+ D+ ++N+ F L G E KL GI D Sbjct: 9 VVDLETTGPKQDGSDKIIQFSC----DFVQSNKIVNHFSTLINPGMPIPVEVKKLTGIKD 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++ P F + + QN ++AHN FD F+++EL+R L+ ++DT+ Sbjct: 65 KDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELELP-MMDTV 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + +P+ + +Y + +SH H A D+ +++ I + Sbjct: 122 QLTQIIYPTLVSYRLIDISKY-LQLSHIHPHKADSDTKATAELLINL 167 >gi|299140892|ref|ZP_07034030.1| exonuclease [Prevotella oris C735] gi|298577858|gb|EFI49726.1| exonuclease [Prevotella oris C735] Length = 286 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 +VFD+ETTGLD NDRII++ +++ R + N K+ P+ + L GI DE Sbjct: 10 VVFDLETTGLDIVNDRIIQLSFIKVCPDGTEERGDHLI---NPGKHIPDMVSDLTGIDDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDT 126 +KD PSF + + + F + ++ N+ +FDV + E R D R+ID Sbjct: 67 KVKDAPSFKQLSATLAEKF--KGCDFAGFNSNRFDVPMLAEEFLRAGIDFDFSKCRLIDA 124 Query: 127 LSI 129 +I Sbjct: 125 QTI 127 >gi|206579741|ref|YP_002237768.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342] gi|206568799|gb|ACI10575.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342] Length = 219 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 29/168 (17%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D TN L R +P+A+ +H IT+E + Sbjct: 4 VIDTETCGLQGG---IVEIASVDIVDGRITNPMSH--LVRPDRPITPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP I + + W +AHNA FD +R+ P I T+ + Sbjct: 59 ADKPWIEEIIPYY------LGSPWYVAHNASFD--------RRVL--PEMSGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDV 170 ARR P + L K + ++ HR+ + + + LL D+ Sbjct: 103 ARRLWPGIKYSNMGLYKSRKLNVATPPGLHHHRALYDCYITAALLLDI 150 >gi|109948241|ref|YP_665469.1| DNA polymerase III subunit epsilon [Helicobacter acinonychis str. Sheeba] gi|109715462|emb|CAK00470.1| DNA polymerase III [Helicobacter acinonychis str. Sheeba] Length = 282 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + L GI E Sbjct: 72 DLETTGSCPLKHEILEIGAVQVSGGKIINR-FETLV---KVKSVPDYISDLTGIAYEDTL 127 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL ++R Sbjct: 128 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSR 184 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 185 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 216 >gi|95930297|ref|ZP_01313034.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] gi|95133549|gb|EAT15211.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] Length = 193 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 10/173 (5%) Query: 7 MRKIVF---DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 MR+ F D+ETTGLD D II AV++ + + ++ ++ P PE+++ H Sbjct: 1 MREAAFCIVDLETTGLDLTTDTIINAAAVKI-KKGRITKIYETYVKP-PTSIPPESIQFH 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD+ L DKPS + EF F + + H+ FD+ ++ L+ L+ + Sbjct: 59 GITDDMLVDKPSIGEVLPEFMTFIGD--SMITGHHINFDLKMLDRHLRENYDCNLEGAPW 116 Query: 124 IDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ + + ++ L+ L Y I R H AL DS + V+++++ Sbjct: 117 LDTMLLHKLVMENNTSTQLDDLLNVYCIDCEQR--HRALGDSIATAKVFLRIL 167 >gi|229051643|ref|ZP_04195113.1| exonuclease [Bacillus cereus AH676] gi|228721754|gb|EEL73228.1| exonuclease [Bacillus cereus AH676] Length = 287 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 10/105 (9%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ-VFLCPNGRKNSPEALKLH 63 NK + ++ D ETTGL + D+IIEI ++L N + + P EA +H Sbjct: 127 NKDQFVILDTETTGLTLR-DQIIEISVIDLAGKILLNSLVKPTIIIP------AEATSIH 179 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 GIT+E + D PS+ I+ E + + +NA+FD+G I + Sbjct: 180 GITNEMVHDAPSWIEIYKELCEV--TAGKTLLIYNAEFDLGMIES 222 >gi|208435412|ref|YP_002267078.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27] gi|208433341|gb|ACI28212.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27] Length = 264 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GIT E Sbjct: 54 DLETTGSCPIKHEILEIGAVQVRGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 109 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 110 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 166 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 167 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 198 >gi|308186683|ref|YP_003930814.1| ribonuclease T [Pantoea vagans C9-1] gi|308057193|gb|ADO09365.1| ribonuclease T [Pantoea vagans C9-1] Length = 222 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 22/195 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A+ L +D + + ++T + P G PEAL G Sbjct: 20 VVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD+ F++A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACIAAGMEFDSTQAHSALYDTQQTATLFCEL 197 Query: 175 M-----VGGSQINFG 184 + +GG + F Sbjct: 198 VNRWKRLGGWPLPFA 212 >gi|217033856|ref|ZP_03439281.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10] gi|216943754|gb|EEC23197.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10] Length = 287 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GIT E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221 >gi|281424378|ref|ZP_06255291.1| exonuclease [Prevotella oris F0302] gi|281401647|gb|EFB32478.1| exonuclease [Prevotella oris F0302] Length = 286 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +VFD+ETTGLD NDRII++ +++ R + N K+ P+ + L GI DE Sbjct: 10 VVFDLETTGLDIVNDRIIQLSFIKVCPDGTEERGDHLI---NPGKHIPDMVSALTGIDDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDT 126 +KD PSF + + + F + ++ N+ +FDV + E R D R+ID Sbjct: 67 KVKDAPSFKQLSATLAEKF--KGCDFAGFNSNRFDVPMLAEEFLRAGIDFDFSKCRLIDA 124 Query: 127 LSI 129 +I Sbjct: 125 QTI 127 >gi|281419997|ref|ZP_06250996.1| exonuclease [Prevotella copri DSM 18205] gi|281405797|gb|EFB36477.1| exonuclease [Prevotella copri DSM 18205] Length = 287 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 8/123 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGLD DRII+I ++++ D ++ + V C + E + L GI++E Sbjct: 10 IVFDLETTGLDMIKDRIIQISYIKVMPDGTEDRKNLYVNPC---MEIPAEVVALTGISNE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDT 126 +KD P+F + + F ++ +N+ FDV + E R D + R+ID Sbjct: 67 DVKDAPTFKQLAATLEKEFT--GCDFAGYNSNHFDVPMLAEEFLRAGIDFDFNKCRLIDA 124 Query: 127 LSI 129 +I Sbjct: 125 QTI 127 >gi|77461145|ref|YP_350652.1| exonuclease [Pseudomonas fluorescens Pf0-1] gi|77385148|gb|ABA76661.1| putative exonuclease [Pseudomonas fluorescens Pf0-1] Length = 203 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65 R V D ETTG+ S + R EI AV +L+ + +Q + N P + +L GI Sbjct: 3 RIAVIDFETTGISPSSSCRATEI-AVVMLENGRIVERYQSLM--NAGVRIPAFIEQLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ L+ PS + +E +F +AHNA FD F + EL RI + L Sbjct: 60 SNAMLRTAPSAEKVMNEVNEFVG--CTPLLAHNAAFDQKFWDFELGRIKRTRLQ--NFAC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +L +ARR P++ N + H A+ D+ + +++ + + Sbjct: 116 SLLLARRLMPAAPNHKLGTLTTFAQLPHTGQAHRAMADAEMAANLMVHL 164 >gi|218261817|ref|ZP_03476532.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii DSM 18315] gi|218223763|gb|EEC96413.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii DSM 18315] Length = 256 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 14/126 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + FD+ETTG++ DRI+EI V++ + SKT R P PE+ +HGI Sbjct: 10 VFFDLETTGINIVKDRIVEISFVKVYPNGKEESKTRRINPEMPIP------PESTAIHGI 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRI 123 TDE +KD P+F I + + +N+ +FD+ + E R D L+ + Sbjct: 64 TDEDVKDCPTFKEIAKSLATQI--EGCDLAGYNSNRFDIPLLAEEFLRAGVDIDLNRRKF 121 Query: 124 IDTLSI 129 ID +I Sbjct: 122 IDVQTI 127 >gi|299538599|ref|ZP_07051882.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1] gi|298726186|gb|EFI66778.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1] Length = 923 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 11/170 (6%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 + D+ETTG N DR+I+I V + D+ + RT+ F+ P K P ++ L IT+E Sbjct: 9 IVDLETTGHSPANGDRMIQIAIVIMKDW-EIERTYTKFINPG--KAIPTFIQDLTHITNE 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD F + ++ + ++AHNA FD+ F+ AE +R P + +DT+ Sbjct: 66 DVKDAFPFEAHADYIYELLA--DCVFVAHNADFDLSFLQAEFKRAGL-PKWQGKKMDTVE 122 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKMM 175 +A+ P S L L I + +HR+ A + L + +++ Sbjct: 123 LAKILFPMSLGFKLGDLAADLNIELANAHRADDDARATAELFKHCWKELL 172 >gi|161503006|ref|YP_001570118.1| exodeoxyribonuclease X [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864353|gb|ABX20976.1| hypothetical protein SARI_01068 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 231 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 29/168 (17%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ ++W +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPLYY------GSQWYVAHNASFDRRVL----------PELPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITIS-------HRSKHGALLDSHLLSDV 170 +RR P + +L K +++ HR+ + + + LL D+ Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDI 150 >gi|124025389|ref|YP_001014505.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. NATL1A] gi|123960457|gb|ABM75240.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. NATL1A] Length = 292 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 10/165 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGLD++ND +E+G++ S++ Q FL P N A K++ I E Sbjct: 69 LILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSFLLPVEINN---AEKINNIPAEI 125 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDTLS 128 + S F N +AHNA+FD + +L +I K P S +D ++ Sbjct: 126 TRLPQPLSEAIKYFESLVRVSNV-IVAHNAEFDKKWFGLKKLPQIEK-PWICS--MDDIT 181 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +R + L YG+ + + H AL D L++V+I+ Sbjct: 182 WPADRQLKTRPSVRDLALAYGVPVWN--AHRALTDCIYLAEVFIR 224 >gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC 27678] gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC 27678] Length = 328 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTGL+ ++ DR IEIG V + + + + A +H I+ Sbjct: 19 VVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIRVH---RDIGAQWIHHISAVE 75 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 L P F I E D + ++AHN FD F+ +E +R+ D P++ ++ T+ Sbjct: 76 LIHAPEFEGIARELRDLLAGRV--FVAHNVAFDSKFLLSEYRRLGTDIPVNSHTMLCTMK 133 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R L C+ +G I + H AL D+H + + ++M Sbjct: 134 LSRSL--IGVGSLADCCREFG--IDNEDAHSALSDAHATALLLGRLM 176 >gi|329946199|ref|ZP_08293812.1| exonuclease, DNA polymerase III, epsilon subunit family [Actinomyces sp. oral taxon 170 str. F0386] gi|328527797|gb|EGF54788.1| exonuclease, DNA polymerase III, epsilon subunit family [Actinomyces sp. oral taxon 170 str. F0386] Length = 276 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 14/149 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69 V D+ETTGL D I+E+ V + R++ + P G P ++HG+ E Sbjct: 58 VVDLETTGLSPTTDSILEVALVLTDAAGRVERSWSTLIDPGAGVDVGPT--RIHGLVAEE 115 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLS 128 L P + + +AHNA+FDVGF+ L + LD +R+ + Sbjct: 116 LSGAPGLDDVADLL--VADLAGRAVVAHNARFDVGFLTQALG--ARGLLDRGARVPRVCT 171 Query: 129 IARRKH----PSSRNDLNSLCKRYGITIS 153 + +H PS R L + C+ G+ I Sbjct: 172 MEWARHFMTTPSRR--LTTCCEVAGVEIG 198 >gi|302522606|ref|ZP_07274948.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] gi|302431501|gb|EFL03317.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] Length = 239 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 17/165 (10%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDEFL 70 FD+ETTG D + DRI+ AV LD S + +L G + EA +HGI T Sbjct: 11 FDLETTGTDIEQDRIV-TAAVIRLDASGAVAHTRTWLLDPGVEIPAEATAIHGIPTARAR 69 Query: 71 KDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL------DPS 121 D +E + + + NA++D+ ++ E +R L +P+ Sbjct: 70 ADGAPARGAVAEITEALAAELRAGTPLVVMNARYDLSLLDRECRRHGVPALAEMLGTEPA 129 Query: 122 RIIDTLSI---ARRKHPSSRNDLNSLCKRYGITI--SHRSKHGAL 161 +ID L + A R SR L +LC YG+ + +H ++ AL Sbjct: 130 PVIDPLVLDKHADRYRRGSRV-LAALCAHYGVRLDTAHDARSDAL 173 >gi|57652115|ref|YP_186779.1| exonuclease [Staphylococcus aureus subsp. aureus COL] gi|87160447|ref|YP_494527.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195792|ref|YP_500602.1| hypothetical protein SAOUHSC_02110 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222044|ref|YP_001332866.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|161510116|ref|YP_001575775.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141184|ref|ZP_03565677.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451040|ref|ZP_05699076.1| exonuclease [Staphylococcus aureus A5948] gi|262049938|ref|ZP_06022798.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30] gi|262053185|ref|ZP_06025343.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3] gi|282923233|ref|ZP_06330914.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765] gi|284024940|ref|ZP_06379338.1| exonuclease [Staphylococcus aureus subsp. aureus 132] gi|294849443|ref|ZP_06790185.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754] gi|304379080|ref|ZP_07361827.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57286301|gb|AAW38395.1| exonuclease [Staphylococcus aureus subsp. aureus COL] gi|87126421|gb|ABD20935.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203350|gb|ABD31160.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374844|dbj|BAF68104.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|160368925|gb|ABX29896.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861282|gb|EEV84094.1| exonuclease [Staphylococcus aureus A5948] gi|259158912|gb|EEW43998.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3] gi|259161946|gb|EEW46528.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30] gi|282593144|gb|EFB98143.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765] gi|294823580|gb|EFG40007.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754] gi|302751766|gb|ADL65943.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342315|gb|EFM08207.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196235|gb|EFU26590.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus CGS01] gi|320139726|gb|EFW31595.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA131] gi|320142357|gb|EFW34171.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177] gi|329314570|gb|AEB88983.1| Exonuclease [Staphylococcus aureus subsp. aureus T0131] gi|329728665|gb|EGG65095.1| exonuclease [Staphylococcus aureus subsp. aureus 21189] Length = 184 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 9/166 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + K I +G V+++D S+ TF + P S + +K+HGI E Sbjct: 7 VALDFETA--NGKRTSICSVGMVKVID-SQITETFHTLVNPQDYF-SQQNIKIHGIQPED 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P+F +F F + +AHNA FD+ ++ +Q I P + + Sbjct: 63 VENAPTFDYVFPYMMQFI--ADLPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQL 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+R S R L + + Y + H AL D+ + + +++ Sbjct: 120 AKRTVDSYRYGLKHMMEFY--QLDFHGHHDALNDAKACAMITFRLL 163 >gi|330967688|gb|EGH67948.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091] Length = 203 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ S R EI AV +++ + FQ + N P ++ L GI Sbjct: 3 RVAVIDFETTGISPSPGCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF + +AHNA FD F + EL RI + Sbjct: 60 SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ +ARR P + N Y + H A+ D+ + +++ Sbjct: 116 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 160 >gi|296273413|ref|YP_003656044.1| exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis DSM 7299] gi|296097587|gb|ADG93537.1| Exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis DSM 7299] Length = 252 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 18/165 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++FD ETTG + + DRII++GA+ ++D + LC + + EA+++H IT Sbjct: 3 KYVLFDTETTG-NQEEDRIIQLGAM-IVDAKAPVEVYDE-LCFSDVEIKLEAMEVHNITP 59 Query: 68 EFLKDKPSFSSI-FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + KP + F + +N + IAHN FD+G I E +I+DT Sbjct: 60 DMIIGKPEATQTKFYQKLQEYNNPSNYLIAHNINFDLGMIKKEGFE------SQYQILDT 113 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITI-----SHRSKHGALLDSH 165 L A+ P + L L RY + I +KH + +H Sbjct: 114 LRCAQHLFPELPYHRLQYL--RYALDIYMDEEEEAAKHNITIKAH 156 >gi|12044881|ref|NP_072691.1| DNA polymerase III PolC [Mycoplasma genitalium G37] gi|1352298|sp|P47277|DPO3_MYCGE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|3844641|gb|AAC71247.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma genitalium G37] gi|166078825|gb|ABY79443.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic Mycoplasma genitalium JCVI-1.0] Length = 1451 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 9/165 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 ++FDIETTGL + D +IE A ++ + S+ + Q FL + K P+ + ++ ITDE Sbjct: 417 VIFDIETTGLHGRYDDVIEFSARKIKNNSEIDHQ-QFFLKID--KPIPKTITEITKITDE 473 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127 L+ + ++ ++ +AHN FD+ F+ + ++ N PL + +IDTL Sbjct: 474 MLEGGIDQQQGLEKIRNYLDD--CVMVAHNGINFDLPFLQTQFEKYNIKPL-TNPLIDTL 530 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++ +P S + L+++C + + H A D+ L V+ Sbjct: 531 CLSWALNPLFSSHTLSNICSKLKLEFDDERLHRAEYDTEALKKVF 575 >gi|257784354|ref|YP_003179571.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] gi|257472861|gb|ACV50980.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] Length = 342 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGLD IIEI A++++D K F + P R+ A ++ IT+ Sbjct: 79 VVVDLETTGLDVHYCEIIEIAALKVVD-GKITEEFSSLIHP-PREIPSGATAINHITNHM 136 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ P+ + +F F + I HN+ ++D + R +D L DT Sbjct: 137 VKNAPTLDKVIPQFDTFV--KGFPLIGHNSLRYDAIVLEENFFR--RDFLCDYVWYDTYK 192 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR+ +N + KR + H H AL D ++ +Y KM Sbjct: 193 LARQILEPPYKLIN-IAKRLNVK-QHGKAHRALADCYMTYGIYEKM 236 >gi|219849043|ref|YP_002463476.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM 9485] gi|219543302|gb|ACL25040.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM 9485] Length = 934 Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 15/164 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 + D+ETTGL S D IIE+ AV +R F+ + P R++ P + +L GI Sbjct: 7 VAIDVETTGLQSGLDEIIEVAAVTFRGRDILDR-FERLVRP--RQSVPLKITRLTGIDPA 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ I ++ F N + H+ FD+ + A+ N+ I DT Sbjct: 64 ALAQAPRFNEIGADLARFIG--NRPIVGHSIGFDLMMLRAQGMNFNQP------IYDTFE 115 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +A P + + L++L R G I H H AL D+ + + ++ Sbjct: 116 LATLLLPQATSYKLSALAARLG--IPHPDAHRALNDAEVAAQLF 157 >gi|300813469|ref|ZP_07093813.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512418|gb|EFK39574.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 297 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 88/178 (49%), Gaps = 15/178 (8%) Query: 2 IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPE 58 ++KN ++ +V DIET GLD + IIEIGAV++ N F+ F L +K + Sbjct: 122 VKKNNLKPYVVIDIETDGLDFDKNLIIEIGAVKV-----ENEKFEEFTRLIKYNKKLNST 176 Query: 59 ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 L GI ++ L ++ S F F ++ + +N +D+ F+N + +P Sbjct: 177 IKDLTGIDEKLLNEEGIELKEALSLFKTFI--KDYPILGYNTSYDIKFLNKSFLDLGMEP 234 Query: 118 LDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ D ++ +++ N L + + YG I+ + H AL DS L +++ K+ Sbjct: 235 I-ANKVYDLMTFVKKEKILLPNYKLQTALQAYG--INKQVPHRALEDSRLTAELSTKV 289 >gi|317047907|ref|YP_004115555.1| ribonuclease T [Pantoea sp. At-9b] gi|316949524|gb|ADU68999.1| ribonuclease T [Pantoea sp. At-9b] Length = 222 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A L +D + + T + P G +PEAL G Sbjct: 20 VVIDVETAGFNAKTDALLEIAATTLKMDDDGWLHCDETLHFHVEPFEGAILNPEALAFTG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114 I + + + +IF + + A +AHNA FD F+ A +R+ Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKMVRKGMKDSHCNRAIIVAHNATFDHNFLMAAAERVGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L CK G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACKAAGMDFDSTQAHSALYDTEQTAILFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|78047167|ref|YP_363342.1| ribonuclease T [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925832|ref|ZP_08187202.1| RNAse T [Xanthomonas perforans 91-118] gi|123585431|sp|Q3BV71|RNT_XANC5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|78035597|emb|CAJ23268.1| ribonuclease T [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543767|gb|EGD15180.1| RNAse T [Xanthomonas perforans 91-118] Length = 213 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 17/181 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63 +V D+ET G D ++EI V + +D T L P G + P++L++ Sbjct: 27 PVVVDVETGGFDWNKHALLEIACVPIEMDTDGRFFPGETASAHLVPAPGLEIDPKSLEIT 86 Query: 64 GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI + F K +K + +F+ + Q A + HNA FD+ F+NA + R+ Sbjct: 87 GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P + DT+++A + + L + G+ + H A+ D+ + ++ K Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 204 Query: 174 M 174 + Sbjct: 205 I 205 >gi|302333559|gb|ADL23752.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JKD6159] Length = 184 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 9/166 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + K I +G V+++D S+ TF + P S + +K+HGI E Sbjct: 7 VALDFETA--NGKRTSICSVGMVKVID-SQITETFHTLVNPQDYF-SQQNIKVHGIQPED 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P+F +F F + +AHNA FD+ ++ +Q I P + + Sbjct: 63 VENAPTFDYVFPYMMQFIAD--LPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQL 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+R S R L + + Y + H AL D+ + + +++ Sbjct: 120 AKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDAKACAMITFRLL 163 >gi|124485750|ref|YP_001030366.1| hypothetical protein Mlab_0928 [Methanocorpusculum labreanum Z] gi|124363291|gb|ABN07099.1| Exonuclease, RNase T and DNA polymerase III [Methanocorpusculum labreanum Z] Length = 228 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 4/167 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGL+ K DRI E+ A++ Y + + PN ++ GIT E Sbjct: 2 LIVDTETTGLNPKIDRITELAAIKFDKYGNKSVMDEYISLPNDICYPENVQEMTGITPEI 61 Query: 70 --LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 LK P + + + HNA+FD+ FI L R + +IDTL Sbjct: 62 LELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSRHRYVFPNGWGVIDTL 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ R + P L+ YG+ ++ H A+ D L V+ M Sbjct: 122 TVFRDRKPQPHR-LSDAISYYGLD-GVKNSHRAIDDVVALCAVFDAM 166 >gi|260061966|ref|YP_003195046.1| DNA polymerase III subunit epsilon [Robiginitalea biformata HTCC2501] gi|88783528|gb|EAR14699.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata HTCC2501] Length = 456 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 13/185 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG +RI EI A+ +D + ++ + P G + L GIT + Sbjct: 4 VVDIETTGNGIYGNRITEI-ALFNIDQGRIADSYSTLVNP-GCEIPAFITGLTGITTAMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLSI 129 ++ P FS I + D F+ ++AH+ FD + E +R LD R + T+ + Sbjct: 62 RNAPDFSEIAPKI-DAFSSGRV-FVAHSVNFDYPIVRKEFERCG---LDFGRKKLCTVRL 116 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFGFK 186 +RR P R+ L LC+ I +S R H A D+ + + ++ M GG GF Sbjct: 117 SRRVFPGLRSYSLGKLCRSLEIPLSDR--HRAAGDARATALLLLRAMEQPGGQDTIAGFL 174 Query: 187 TNEDR 191 R Sbjct: 175 NARSR 179 >gi|282861901|ref|ZP_06270964.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE] gi|282562926|gb|EFB68465.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE] Length = 333 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 10/186 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTGL +++DRI+ L + + P + P + +HG+T E L Sbjct: 21 VVDVETTGL-ARDDRIVSAAVYRLDALGDVEDHWYTLVNP---ERDPGPVWIHGLTSEAL 76 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + ++ + + + +AHNA FD + E R R+ T++++ Sbjct: 77 EGAPLFPEVAAQLSERLDGRVL--VAHNAAFDWSMLAREYARAAITAPVRQRLC-TIALS 133 Query: 131 RR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 + + P + L SL +G+ + R+ H AL D+ +L++ + + ++ E Sbjct: 134 KELRLPLPNHKLESLAAHFGV-VQQRAHH-ALDDARVLAEAFRPSLHAAARGGVRLPLLE 191 Query: 190 DRFFKE 195 R E Sbjct: 192 CRPLTE 197 >gi|108802442|ref|YP_642638.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119855268|ref|YP_935871.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] gi|108772861|gb|ABG11582.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119697985|gb|ABL95056.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] Length = 193 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 6/125 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ET+G D RI+ + A+ + T L P P +HG+T Sbjct: 8 VVVDVETSGFDPHTARILSVAALVVTTNGVTTTALHTLLDPG---VDPGPTDIHGLTTAM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L +P ++ I ++ + + +AHNA FD F+ AE +R + L S ++ TL + Sbjct: 65 LAGQPRYADIATDLAALLSGRI--LVAHNAAFDYAFLAAEARRAGAE-LPVSSVLCTLEL 121 Query: 130 ARRKH 134 A R H Sbjct: 122 AGRLH 126 >gi|294794415|ref|ZP_06759551.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 3_1_44] gi|294454745|gb|EFG23118.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 3_1_44] Length = 862 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 14/159 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+E+TG D+ DRII+I A+ + + + F+ F+ P ++ ++HG +D + Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERFINPGIPVG--QSKEVHGFSDAY 552 Query: 70 LK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 L+ D + F EF ++A + HN +DV EL R N + I D Sbjct: 553 LQEHGEDPATVLKAFKEF-----SKDAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYD 607 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 TL I RR +P+ N L L ++ I H H A+ D Sbjct: 608 TLDIYRRFYPNLPNHKLGFLASKF--PIHHEPTHNAMDD 644 >gi|116493923|ref|YP_805657.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Lactobacillus casei ATCC 334] gi|116104073|gb|ABJ69215.1| 3'-5' exonuclease and CRISPR-associated protein cas2 [Lactobacillus casei ATCC 334] Length = 301 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 7/101 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGIT-D 67 + DIETTGLD++ D II IGAV+ ++T + F + P R+ P + KL G++ + Sbjct: 131 VALDIETTGLDAERDAIIAIGAVKGPSVNETEK-FTTLVNP--RRPLPSTVAKLTGLSAE 187 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 E + + S S DF + + +N +FD+GF++A Sbjct: 188 ELVANGISLSEAVQALRDFTG--SLPLVGYNLRFDMGFLSA 226 >gi|217978759|ref|YP_002362906.1| DNA polymerase III subunit epsilon [Methylocella silvestris BL2] gi|217504135|gb|ACK51544.1| Exonuclease RNase T and DNA polymerase III [Methylocella silvestris BL2] Length = 222 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ETTGLD + D II I AV++ + T+ F+ + P R N+ EA+K+H + + Sbjct: 33 VAFDCETTGLDPRRDDIITIAAVKIRGNRILTSERFEAVIRPEARMNA-EAIKVHRLREA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ I +F F + I + +FDV I+ L + L P+ +I+ + Sbjct: 92 DVEAGKRIEKIMPQFLHFIGGR--PLIGYYLEFDVRMIDKYLLGLLGIEL-PNPLIEVSN 148 Query: 129 I-ARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + RK+ P + DL+ + + +H A D+ + + +YIK+ Sbjct: 149 LYYERKYGDAPPGATIDLSFAAILKDLDLPMLDQHDAFNDALMTAMIYIKL 199 >gi|317011686|gb|ADU85433.1| DNA polymerase III subunit epsilon [Helicobacter pylori SouthAfrica7] Length = 287 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + L GI E Sbjct: 77 DLETTGSCPIKHEILEIGAVQVSGGKIINR-FETLV---KVKSVPDYISDLTGIAYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL ++R Sbjct: 133 NAPSVYEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSR 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221 >gi|322650293|gb|EFY46707.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 205 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P N PEAL +G Sbjct: 10 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 69 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF E A +AHNA FD F+ A R + Sbjct: 70 IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAGRASLK 129 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 130 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 187 Query: 175 M 175 + Sbjct: 188 V 188 >gi|315658260|ref|ZP_07911132.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus lugdunensis M23590] gi|315496589|gb|EFU84912.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus lugdunensis M23590] Length = 893 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 8/160 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG D II+IG + D K T+ + + P L I ++ L Sbjct: 8 VVDLETTGNQLDYDEIIQIGITFVRD-QKIVGTYHSMINTDVEI-PPFIQALTSIEEDML 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K P F + + + +++ ++AHN FD+ FI +R N P ++IDT+ + Sbjct: 66 KQAPYFHEVAEDVYK--QLKDSVFVAHNVSFDLTFIKKAFKR-NHIHFQPKKVIDTVELF 122 Query: 131 RRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 + P+ ++ L+ L + + I + +HR+ A + L+ Sbjct: 123 KIAFPTDKSYQLSELAEAHHIPLDNAHRADEDATTTAKLM 162 >gi|126661959|ref|ZP_01732958.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium BAL38] gi|126625338|gb|EAZ96027.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium BAL38] Length = 256 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG+D DRI+EI ++ Y N+ + +L P+ +HGITDE + Sbjct: 12 FDLETTGIDVARDRIVEISIFKV--YPNGNKESKTWLVNPTIPIPPQTTAVHGITDEKVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 ++P+F + ++ + + + ++ +FD+ + EL R D Sbjct: 70 NEPTFKELATQVHNMIKDSDLAGF-NSDRFDIPLLAEELLRAEVD 113 >gi|15924884|ref|NP_372418.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu50] gi|15927468|ref|NP_375001.1| hypothetical protein SA1710 [Staphylococcus aureus subsp. aureus N315] gi|21283564|ref|NP_646652.1| hypothetical protein MW1835 [Staphylococcus aureus subsp. aureus MW2] gi|49484135|ref|YP_041359.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252] gi|49486713|ref|YP_043934.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476] gi|82751547|ref|YP_417288.1| DNA polymerase III alpha chain [Staphylococcus aureus RF122] gi|148268366|ref|YP_001247309.1| exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH9] gi|150394428|ref|YP_001317103.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH1] gi|156980210|ref|YP_001442469.1| hypothetical protein SAHV_1879 [Staphylococcus aureus subsp. aureus Mu3] gi|253316903|ref|ZP_04840116.1| hypothetical protein SauraC_12304 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253729653|ref|ZP_04863818.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734998|ref|ZP_04869163.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus TCH130] gi|255006681|ref|ZP_05145282.2| hypothetical protein SauraM_09445 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257426026|ref|ZP_05602448.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus 55/2053] gi|257428699|ref|ZP_05605094.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322] gi|257431309|ref|ZP_05607685.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397] gi|257434027|ref|ZP_05610378.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp. aureus E1410] gi|257436931|ref|ZP_05612973.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus M876] gi|257793752|ref|ZP_05642731.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781] gi|258408894|ref|ZP_05681176.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|258421002|ref|ZP_05683933.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9719] gi|258422971|ref|ZP_05685870.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9635] gi|258430026|ref|ZP_05688396.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9299] gi|258443456|ref|ZP_05691798.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115] gi|258445314|ref|ZP_05693505.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6300] gi|258447878|ref|ZP_05696012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6224] gi|258453311|ref|ZP_05701296.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A5937] gi|269203547|ref|YP_003282816.1| exonuclease [Staphylococcus aureus subsp. aureus ED98] gi|282894561|ref|ZP_06302789.1| exonuclease [Staphylococcus aureus A8117] gi|282904525|ref|ZP_06312410.1| exonuclease [Staphylococcus aureus subsp. aureus C160] gi|282906298|ref|ZP_06314150.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260] gi|282909214|ref|ZP_06317030.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911519|ref|ZP_06319319.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WBG10049] gi|282914692|ref|ZP_06322477.1| exonuclease [Staphylococcus aureus subsp. aureus M899] gi|282917241|ref|ZP_06324996.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus D139] gi|282919729|ref|ZP_06327461.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C427] gi|282925133|ref|ZP_06332793.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C101] gi|282928067|ref|ZP_06335674.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102] gi|283771044|ref|ZP_06343935.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus H19] gi|283958655|ref|ZP_06376101.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97] gi|293507769|ref|ZP_06667611.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus 58-424] gi|293510786|ref|ZP_06669488.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus M809] gi|293539326|ref|ZP_06672005.1| exonuclease [Staphylococcus aureus subsp. aureus M1015] gi|295407274|ref|ZP_06817073.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819] gi|295428476|ref|ZP_06821103.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276903|ref|ZP_06859410.1| exonuclease [Staphylococcus aureus subsp. aureus MR1] gi|297208922|ref|ZP_06925326.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246200|ref|ZP_06930051.1| exonuclease [Staphylococcus aureus A8796] gi|297590053|ref|ZP_06948693.1| exonuclease [Staphylococcus aureus subsp. aureus MN8] gi|300913021|ref|ZP_07130459.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70] gi|13701687|dbj|BAB42980.1| SA1710 [Staphylococcus aureus subsp. aureus N315] gi|14247666|dbj|BAB58056.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu50] gi|21205005|dbj|BAB95700.1| MW1835 [Staphylococcus aureus subsp. aureus MW2] gi|49242264|emb|CAG40971.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252] gi|49245156|emb|CAG43622.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476] gi|82657078|emb|CAI81515.1| probable DNA polymerase III alpha chain [Staphylococcus aureus RF122] gi|147741435|gb|ABQ49733.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH9] gi|149946880|gb|ABR52816.1| Exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH1] gi|156722345|dbj|BAF78762.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253726594|gb|EES95323.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727180|gb|EES95909.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus TCH130] gi|257271169|gb|EEV03326.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus 55/2053] gi|257274343|gb|EEV05855.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322] gi|257277958|gb|EEV08614.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397] gi|257280953|gb|EEV11097.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp. aureus E1410] gi|257283720|gb|EEV13845.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus M876] gi|257787724|gb|EEV26064.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781] gi|257840341|gb|EEV64803.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|257842950|gb|EEV67368.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9719] gi|257846758|gb|EEV70773.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9635] gi|257849620|gb|EEV73588.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9299] gi|257851341|gb|EEV75281.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115] gi|257855832|gb|EEV78756.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6300] gi|257858810|gb|EEV81679.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6224] gi|257864519|gb|EEV87262.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A5937] gi|262075837|gb|ACY11810.1| exonuclease [Staphylococcus aureus subsp. aureus ED98] gi|282313091|gb|EFB43489.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C101] gi|282316367|gb|EFB46744.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C427] gi|282318868|gb|EFB49223.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus D139] gi|282321406|gb|EFB51732.1| exonuclease [Staphylococcus aureus subsp. aureus M899] gi|282324528|gb|EFB54840.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WBG10049] gi|282326782|gb|EFB57079.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330495|gb|EFB60012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260] gi|282590131|gb|EFB95212.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102] gi|282595081|gb|EFC00048.1| exonuclease [Staphylococcus aureus subsp. aureus C160] gi|282763048|gb|EFC03180.1| exonuclease [Staphylococcus aureus A8117] gi|283459638|gb|EFC06729.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus H19] gi|283471164|emb|CAQ50375.1| exonuclease [Staphylococcus aureus subsp. aureus ST398] gi|283789695|gb|EFC28517.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97] gi|285817574|gb|ADC38061.1| DNA polymerase III polC-type [Staphylococcus aureus 04-02981] gi|290919861|gb|EFD96930.1| exonuclease [Staphylococcus aureus subsp. aureus M1015] gi|291094832|gb|EFE25100.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus 58-424] gi|291466417|gb|EFF08941.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus M809] gi|294967849|gb|EFG43879.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819] gi|295127458|gb|EFG57097.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886412|gb|EFH25341.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176907|gb|EFH36164.1| exonuclease [Staphylococcus aureus A8796] gi|297577181|gb|EFH95895.1| exonuclease [Staphylococcus aureus subsp. aureus MN8] gi|298695233|gb|ADI98455.1| probable DNA polymerase III alpha chain [Staphylococcus aureus subsp. aureus ED133] gi|300885799|gb|EFK81006.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70] gi|312437640|gb|ADQ76711.1| exonuclease [Staphylococcus aureus subsp. aureus TCH60] gi|312830266|emb|CBX35108.1| exonuclease family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129297|gb|EFT85291.1| hypothetical protein CGSSa03_08545 [Staphylococcus aureus subsp. aureus CGS03] gi|315193423|gb|EFU23820.1| hypothetical protein CGSSa00_04826 [Staphylococcus aureus subsp. aureus CGS00] gi|329724805|gb|EGG61309.1| exonuclease [Staphylococcus aureus subsp. aureus 21172] gi|329731424|gb|EGG67787.1| exonuclease [Staphylococcus aureus subsp. aureus 21193] Length = 184 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 9/166 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + K I +G V+++D S+ TF + P S + +K+HGI E Sbjct: 7 VALDFETA--NGKRTSICSVGMVKVID-SQITETFHTLVNPQDYF-SQQNIKVHGIQPED 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P+F +F F + +AHNA FD+ ++ +Q I P + + Sbjct: 63 VENAPTFDYVFPYMMQFI--ADLPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQL 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+R S R L + + Y + H AL D+ + + +++ Sbjct: 120 AKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDAKACAMITFRLL 163 >gi|294626315|ref|ZP_06704917.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665592|ref|ZP_06730872.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599316|gb|EFF43451.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604641|gb|EFF48012.1| ribonuclease T [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 213 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 19/181 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-----QVFLCPN-GRKNSPEALKLH 63 +V D+ET G D ++EI V + + R F L P G + P++L++ Sbjct: 28 VVVDVETGGFDWNKHALLEIACVPI-EMGADGRFFPGETASAHLVPAPGLEIDPKSLEIT 86 Query: 64 GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI + F K +K + +F+ + Q A + HNA FD+ F+NA + R+ Sbjct: 87 GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P + DT+++A + + L + G+ + H A+ D+ + ++ K Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 204 Query: 174 M 174 + Sbjct: 205 I 205 >gi|227111797|ref|ZP_03825453.1| ribonuclease T [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 223 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++E+ AV L +D + + + T + P G P AL +G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + IF +Q A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAAERCSLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D++ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|15612503|ref|NP_224156.1| DNA polymerase III subunit epsilon [Helicobacter pylori J99] gi|4156060|gb|AAD07016.1| DNA POLYMERASE III [Helicobacter pylori J99] Length = 323 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GIT E Sbjct: 113 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 168 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 169 NAPSAHEALQELRIFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 225 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 226 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 257 >gi|47094224|ref|ZP_00231936.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858] gi|47017396|gb|EAL08217.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858] Length = 618 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNP--EKPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +K+ P F + + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +AR +P L L + + H H A D+ + +D Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 161 >gi|254386752|ref|ZP_05002044.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] gi|194345589|gb|EDX26555.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] Length = 246 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 27/162 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD-- 67 + FD+ETTG + RI+ VE+ R + +L G +A +HGI+ Sbjct: 10 VGFDLETTGTEPGESRIVTAAVVEVRGGEVRER--RGWLADPGIPIPEQASAIHGISTAR 67 Query: 68 EFLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---------R 112 + +P ++ E W + A +A+NA FD+ ++AEL R Sbjct: 68 AVAEGRPVREVAQEVAAALVEHW----RRGAVVVAYNAAFDLTLLSAELARHGLPSLSDR 123 Query: 113 INKDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 + P P ++D L+I R ++ + L ++C YG+T+ Sbjct: 124 LGGAPTGP--VVDPLTIDRAVDRYRRGKRTLEAVCGVYGVTL 163 >gi|260598318|ref|YP_003210889.1| exodeoxyribonuclease X [Cronobacter turicensis z3032] gi|260217495|emb|CBA31655.1| Exodeoxyribonuclease 10 [Cronobacter turicensis z3032] Length = 220 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL ++E+ +V+++D + N + P+ R S +A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---VVEVASVDIIDGAIVN-PMSDLVRPD-RPISHQAMAIHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + + + W +AHNA FD + P P I T+ + Sbjct: 59 ADKPYIEDVIPRY------HGSPWYVAHNASFDRKVL----------PEMPGEWICTVKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 ARR P R L K + + + H AL D ++ + + +++M Sbjct: 103 ARRLWPGIRYSNMGLYKSLKLQVETPAGLHHHRALFDCYITAALLLEIM 151 >gi|271970236|ref|YP_003344432.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270513411|gb|ACZ91689.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 189 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 11/144 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG +K DRI EI V L T + + P + A+ +HGIT+ Sbjct: 1 MVDVETTGFSPAKGDRICEIALVSLDADGTTVDEWHSLVDP---RRGTGAVHVHGITEAM 57 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P + E W + +AHN FD+ F+ ++ + + T + Sbjct: 58 VEGAPVIEEVLDEVWQRIAGRVL--VAHNVSFDLRFL-----KVLPGSHWLTEALCTQQL 110 Query: 130 ARRKHPSSRNDLNSLCKRYGITIS 153 A P + L + C+R GI S Sbjct: 111 APDLIPGGKWTLGACCQRAGIPFS 134 >gi|150007345|ref|YP_001302088.1| DNA polymerase III subunit epsilon [Parabacteroides distasonis ATCC 8503] gi|255014024|ref|ZP_05286150.1| DNA polymerase III epsilon chain [Bacteroides sp. 2_1_7] gi|256839636|ref|ZP_05545145.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13] gi|262382080|ref|ZP_06075218.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B] gi|298375333|ref|ZP_06985290.1| exonuclease [Bacteroides sp. 3_1_19] gi|301310653|ref|ZP_07216592.1| exonuclease [Bacteroides sp. 20_3] gi|149935769|gb|ABR42466.1| DNA polymerase III epsilon chain [Parabacteroides distasonis ATCC 8503] gi|256738566|gb|EEU51891.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13] gi|262297257|gb|EEY85187.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B] gi|298267833|gb|EFI09489.1| exonuclease [Bacteroides sp. 3_1_19] gi|300832227|gb|EFK62858.1| exonuclease [Bacteroides sp. 20_3] Length = 256 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 14/126 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + FD+ETTG++ DRI+EI V++ + +KT R + P G PE+ +HGI Sbjct: 10 VFFDLETTGINIVKDRIVEISYVKVFPNGKEETKTRR-----INP-GMPIPPESTAIHGI 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRI 123 TDE +KD P+F I + + +N+ +FD+ + E R D L+ + Sbjct: 64 TDEDVKDCPTFKEIAKSLAT--QIEGCDLAGYNSNRFDIPMLAEEFLRAGVDIDLNRRKF 121 Query: 124 IDTLSI 129 ID +I Sbjct: 122 IDVQTI 127 >gi|325142622|gb|EGC65013.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 961-5945] Length = 405 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 51 NGRKNSPE-ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 N +K P+ + L GI+D + D P F+ I E + + +AHN++FD F+ E Sbjct: 3 NPQKPIPQFVVGLTGISDGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHE 60 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 R+ P ++ ++ ++R +P ++ L+S+ +R GI + R H A+ D L Sbjct: 61 FHRVGIGFSSP--VLCSVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALC 116 Query: 169 D 169 D Sbjct: 117 D 117 >gi|254391300|ref|ZP_05006504.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|326440213|ref|ZP_08214947.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|197704991|gb|EDY50803.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 241 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D +NDRI+ AV + D + +L G P A ++HG+TD+ + Sbjct: 11 AFDTETTGVDVENDRIVA-AAVVVQDMAGGRPRITRWLINPGIPVPPGATEVHGLTDDHV 69 Query: 71 KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLD------P 120 + + + + E A + NA FD+ ++ EL+R PL P Sbjct: 70 QRNGRWPAPVLEEVAKTVAGHCAAGRPLVVMNAPFDLTILDRELRRHRATPLSRYLEHTP 129 Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 ++D + ++ ++ R L LC +Y + + Sbjct: 130 LTVLDPRVLDKQLDRYRKGRRSLVDLCSQYEVVL 163 >gi|15645997|ref|NP_208178.1| DNA polymerase III subunit epsilon [Helicobacter pylori 26695] gi|2314554|gb|AAD08426.1| DNA polymerase III epsilon subunit (dnaQ) [Helicobacter pylori 26695] Length = 350 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GIT E Sbjct: 113 DLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 168 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 169 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 225 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 226 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 257 >gi|322615086|gb|EFY12009.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619925|gb|EFY16798.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622237|gb|EFY19082.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627759|gb|EFY24549.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632896|gb|EFY29640.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636613|gb|EFY33316.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641194|gb|EFY37836.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644871|gb|EFY41404.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322655865|gb|EFY52167.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660193|gb|EFY56432.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665242|gb|EFY61430.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669499|gb|EFY65647.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673425|gb|EFY69527.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677353|gb|EFY73417.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679984|gb|EFY76023.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687456|gb|EFY83428.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194090|gb|EFZ79289.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198572|gb|EFZ83673.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202899|gb|EFZ87934.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208618|gb|EFZ93556.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211154|gb|EFZ96001.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217595|gb|EGA02310.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218944|gb|EGA03454.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227078|gb|EGA11258.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229397|gb|EGA13520.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236896|gb|EGA20968.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240342|gb|EGA24386.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242669|gb|EGA26690.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250235|gb|EGA34126.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252445|gb|EGA36292.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256463|gb|EGA40196.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261433|gb|EGA45016.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267209|gb|EGA50694.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272728|gb|EGA56133.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 215 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P N PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF E A +AHNA FD F+ A R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAGRASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|326444059|ref|ZP_08218793.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 285 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 21/159 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68 + FD+ETTG D + RI+ VE R + +L G + +A +HGIT E Sbjct: 54 VGFDLETTGTDPREARIVTAAVVEARAGEPVRR--RTWLADPGVRIPAQASAIHGITSER 111 Query: 69 -FLKDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---------RINK 115 + +P+ + +E ++ + +A+NA FD+ + AE++ R+ Sbjct: 112 AAAEGRPAREVADEVAAELCGYWA-RGVPVVAYNAAFDLSLLAAEIRRYGLPSLSDRLGG 170 Query: 116 DPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 P P +ID +I R ++ + L ++ YG+ + Sbjct: 171 RPTGP--VIDPYTIDRAVDRYRKGKRTLEAVSAEYGVPL 207 >gi|149927335|ref|ZP_01915591.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] gi|149824049|gb|EDM83272.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] Length = 248 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL+ + D II IGAV L+ + ++ K + + +HGIT Sbjct: 56 LAIDFETTGLNPEYDDIISIGAVPLMSNRIMLGQSRYWILKPAAKLRSDTIPIHGITHSD 115 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128 + + P + E + + A +AH A + F++ LQ R+ + + P +IDT+ Sbjct: 116 IANAPDLIDVLPELLKMMSGKLA--VAHCAAIETRFLDTALQYRVGEGIVFP--VIDTMG 171 Query: 129 IAR 131 I R Sbjct: 172 IER 174 >gi|309797899|ref|ZP_07692280.1| exonuclease [Escherichia coli MS 145-7] gi|308118507|gb|EFO55769.1| exonuclease [Escherichia coli MS 145-7] Length = 182 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 6/164 (3%) Query: 13 DIETTGLD-SKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 DIE+TGLD +IIEI V+ ++ +F + P R P+A +HGI+ E L Sbjct: 7 DIESTGLDFLSGHKIIEIAMVKYEIETQTMVDSFVMRFNPR-RSIDPKAQAVHGISLEDL 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129 +P + + + + WIAHN + FD+ FI EL+ L +IDTL Sbjct: 66 AAEPLLAD-HASSVASYLSSSDIWIAHNGEAFDIPFIRHELKSYGFS-LPDIPLIDTLFS 123 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R L L G H H AL D++L+ + K Sbjct: 124 LWATEDGKRPRLEELAFSLGFIYDHAKAHSALYDTNLMMQCFFK 167 >gi|261838819|gb|ACX98585.1| DNA polymerase III epsilon subunit [Helicobacter pylori 51] Length = 323 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GIT E Sbjct: 113 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDTL 168 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 169 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 225 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 226 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 257 >gi|332306913|ref|YP_004434764.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174242|gb|AEE23496.1| Exonuclease RNase T and DNA polymerase III [Glaciecola agarilytica 4H-3-7+YE-5] Length = 251 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 5/124 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL+ K D I+ IG V + Q ++ + +++ +HGIT Sbjct: 61 VALDFETTGLNPKTDSIVSIGLVAMTTQRIRCAQAQHWIIKPDTELKSKSVVIHGITHSD 120 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDTLS 128 + D P+F+ + E + Q +AH+ + F+N+ + Q I ++ + P IDT+S Sbjct: 121 VADAPTFNRVLDELLEHL--QGKVVVAHHKDIESRFLNSAMKQYIGEEIVFPC--IDTMS 176 Query: 129 IARR 132 + R Sbjct: 177 LEAR 180 >gi|330895532|gb|EGH27842.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. japonica str. M301072PT] Length = 203 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV ++ + FQ + N P ++ L GI Sbjct: 3 RIAVIDFETTGISPGHSCRATEI-AVVIMAQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF + +AHNA FD F + EL RI + Sbjct: 60 SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIERT--REQSFAC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +L +ARR P + N RY H A+ D+ + +++ Sbjct: 116 SLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANL 160 >gi|308234071|ref|ZP_07664808.1| DNA polymerase III, epsilon subunit [Atopobium vaginae DSM 15829] Length = 1008 Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 10/149 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL KND++ +I AV+L + S + F F+ P+ R KL I Sbjct: 51 VALDTETTGLSHKNDQLTQIAAVKLEEGSVADE-FTTFVNPS-RPIPHNIEKLTNIYSVD 108 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+ + + DF +AHNA FD FI A D IDTL++ Sbjct: 109 VEHAPTPQTAVARLADFVELDPI--LAHNASFDRAFIEAA----QNDTCVSDTWIDTLAL 162 Query: 130 ARRKHPS-SRNDLNSLCKRYGI-TISHRS 156 +R P+ + + L L +G +++HR+ Sbjct: 163 SRIAFPALTSHKLQDLAYIFGCESVTHRA 191 >gi|70732717|ref|YP_262480.1| exonuclease [Pseudomonas fluorescens Pf-5] gi|68347016|gb|AAY94622.1| exonuclease [Pseudomonas fluorescens Pf-5] Length = 203 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 11/170 (6%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65 R V D ETTG+ S + R EI AV +L+ + +Q + N P + +L GI Sbjct: 3 RIAVIDFETTGISPSSSCRATEI-AVVILEQGRIVERYQSLM--NAGVRVPAFIEQLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ L+ P + +E +F +AHNA FD F + EL RI + L Sbjct: 60 SNAMLRSAPPAEQVMNEVNEFVG--ITPLLAHNAAFDQKFWDFELGRIKRTRLQ--NFAC 115 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +L +ARR P++ N L +L G+ + ++ H A+ D+ + +++ + Sbjct: 116 SLLLARRLMPAAPNHKLGTLTSFAGLPHTGQA-HRAMADAEMAANLVAHL 164 >gi|226943525|ref|YP_002798598.1| ribonuclease T [Azotobacter vinelandii DJ] gi|226718452|gb|ACO77623.1| ribonuclease T [Azotobacter vinelandii DJ] Length = 202 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 23/184 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQV--FLCPNGRKNSPEALK 61 +V D+ET G +S D ++EI A+ + L + + + F+V F G AL+ Sbjct: 11 VVVDVETGGFNSATDALLEIAAITIGMDEQGLLFPEHSHFFRVEPF---EGANIEAAALE 67 Query: 62 LHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR- 112 GI D L+ S E + + + A + HN+ FD+ F+NA + R Sbjct: 68 FTGIKLDHPLRMAVSEEHALQEIFRGVRKAVKSHGCKRAILVGHNSSFDLAFLNAAVARC 127 Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 128 DIKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQSAGIEFDGREAHSARYDTEKTAELF 185 Query: 172 IKMM 175 ++ Sbjct: 186 CGIV 189 >gi|217963949|ref|YP_002349627.1| DnaQ family exonuclease/DinG family helicase [Listeria monocytogenes HCC23] gi|217333219|gb|ACK39013.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria monocytogenes HCC23] gi|307571481|emb|CAR84660.1| ATP-dependent helicase [Listeria monocytogenes L99] Length = 928 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 11/165 (6%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +K+ P F + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 SPKDVKNAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +AR +P L L + + H H A D+ + +D Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 161 >gi|328943468|ref|ZP_08240933.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829] gi|327491437|gb|EGF23211.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829] Length = 1011 Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 10/149 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL KND++ +I AV+L + S + F F+ P+ R KL I Sbjct: 54 VALDTETTGLSHKNDQLTQIAAVKLEEGSVADE-FTTFVNPS-RPIPHNIEKLTNIYSVD 111 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+ + + DF +AHNA FD FI A D IDTL++ Sbjct: 112 VEHAPTPQTAVARLADFVELDPI--LAHNASFDRAFIEAA----QNDTCVSDTWIDTLAL 165 Query: 130 ARRKHPS-SRNDLNSLCKRYGI-TISHRS 156 +R P+ + + L L +G +++HR+ Sbjct: 166 SRIAFPALTSHKLQDLAYIFGCESVTHRA 194 >gi|154492230|ref|ZP_02031856.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC 43184] gi|154087455|gb|EDN86500.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC 43184] Length = 256 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 14/126 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + FD+ETTG++ DRI+EI V++ + SKT R P PE+ +HGI Sbjct: 10 VFFDLETTGINIVKDRIVEISFVKVYPNGKEESKTRRINPEMPIP------PESTAIHGI 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRI 123 TDE +KD P+F I + + +N+ +FD+ + E R D L+ + Sbjct: 64 TDEDVKDCPTFKEIAKSLAAQI--EGCDLAGYNSNRFDIPLLAEEFLRAGVDIDLNKRKF 121 Query: 124 IDTLSI 129 +D +I Sbjct: 122 VDVQTI 127 >gi|260913082|ref|ZP_05919564.1| ribonuclease T [Pasteurella dagmatis ATCC 43325] gi|260632669|gb|EEX50838.1| ribonuclease T [Pasteurella dagmatis ATCC 43325] Length = 221 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/192 (23%), Positives = 90/192 (46%), Gaps = 20/192 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGR 53 + KN+ R ++ D+ET G ++K D ++E+ A+ + +D + ++ + P G Sbjct: 17 LLKNRFRGYFPVIIDVETAGFNAKTDALLELAAITVKMDDNGLLQPDQKCHFHIEPFEGA 76 Query: 54 KNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGF 105 +PE+L+ +GI L+ S + +E + + Q + +AHNA FD F Sbjct: 77 NINPESLQFNGIDIHNPLRGAVSETHAITELFRMVRKGQKDADCQRSIIVAHNAVFDQSF 136 Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 I A +R + ++P P + DT +++ + L C+ I + H AL D Sbjct: 137 IMAAAERTGVKRNPFHPFGMFDTATLSGFM--LGQTVLVKACQVAKIPFDGKQAHSALYD 194 Query: 164 SHLLSDVYIKMM 175 + ++++ M+ Sbjct: 195 TERTTELFCYMV 206 >gi|238022741|ref|ZP_04603167.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147] gi|237865944|gb|EEP67080.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147] Length = 464 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 90/175 (51%), Gaps = 11/175 (6%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + ++ D+ETTG DRI E+ + T Q + PN S L Sbjct: 18 RTLPIPVVILDLETTGGHFYADRITELAFLHFWQGKIT--AVQQLVQPN-MPISGFVRDL 74 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI+DE L+ +P+F+ + + + IAHN++FD F+ E +R N + Sbjct: 75 TGISDEMLQGQPTFAQFAPQVLPLL--RGSLLIAHNSRFDYTFLRHECRR-NGFAFATAG 131 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + ++ ++R+ +P +++L+S+ +R+G+ ++ S+H A+ D +++ Y+++ + Sbjct: 132 LC-SVQLSRKLYPEFFKHNLDSIIERHGLAVA--SRHRAMSDVLAVAE-YLQLAL 182 >gi|167624484|ref|YP_001674778.1| exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis HAW-EB4] gi|167354506|gb|ABZ77119.1| Exonuclease RNase T and DNA polymerase III [Shewanella halifaxensis HAW-EB4] Length = 205 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 21/184 (11%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCPNGRKNSPEAL 60 +++ + D+E TGLD + D+I+ IG + LL +K+ + + +G ++ Sbjct: 18 SQLPLMAVDLEMTGLDCQFDQILSIGLIPIHNGLLQVAKSQH---LLVSIDGSVG--DSA 72 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGI D L S + W + +AH+A D+ F+ E+QR + Sbjct: 73 TIHGILDNQLTQAVSAKQAMA--WFLEQSKGHVLVAHHAPLDLCFLKTEIQRCYGQTMQF 130 Query: 121 SRIIDTLSIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 IDT+++ + R+H + L++ +RYG+ + + H A +D+ ++ + Sbjct: 131 VA-IDTMAVEKKRLLRQHDVIKEGTLRLDACRQRYGLPV--YTAHNAAVDALACGELLLA 187 Query: 174 MMVG 177 M G Sbjct: 188 QMAG 191 >gi|260063517|ref|YP_003196597.1| putative DNA polymerase III subunit epsilon [Robiginitalea biformata HTCC2501] gi|88782961|gb|EAR14135.1| putative DNA polymerase III epsilon chain [Robiginitalea biformata HTCC2501] Length = 258 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG + DRI+E+ +++ + N+ + +L G EA +HGITDE + Sbjct: 12 FDLETTGTNIATDRIVELAILKV--FPNGNKESKTWLVNPGVPIPEEASAIHGITDEKVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 +P+F + E + Q + N+ +FD+ + EL R D Sbjct: 70 GEPTFRELAREVYQMI--QGCDLAGFNSNRFDIPLLAEELLRAGVD 113 >gi|331701662|ref|YP_004398621.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri NRRL B-30929] gi|329129005|gb|AEB73558.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri NRRL B-30929] Length = 177 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 12/127 (9%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + +HGI + + D P+F ++ F+ N IAHNA FD + L+R P Sbjct: 50 INVHGIHERDVVDAPTFPEVWRHIQPLFS-ANKLVIAHNASFDNSVLKRTLERYEVQP-- 106 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 P + +DTL +++ +P+ N LN+LC + I + H H AL DS +++ + Sbjct: 107 PHYLTLDTLRTSKQFYPTLENHKLNTLCDKLNIVLKHH--HNALDDSVACANILL----- 159 Query: 178 GSQINFG 184 Q FG Sbjct: 160 TEQAQFG 166 >gi|183598873|ref|ZP_02960366.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827] gi|188021081|gb|EDU59121.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827] Length = 213 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G P AL G Sbjct: 20 VVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSPDETLHFHVEPFEGANLEPAALAFTG 79 Query: 65 I--TDEFLKDKPSFSSIFSEF------WDFFNEQNAEWIAHNAKFDVGFI--NAELQRIN 114 I T+ + ++ + F + A +AHNA FD F+ AE + Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKMVRKGMKATDCNRAIIVAHNATFDHSFVMNAAERAGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI + HGAL D++ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLVF--GQTILAKACVAAGIPFDGKQAHGALYDTNRTALLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|146299725|ref|YP_001194316.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] gi|146154143|gb|ABQ04997.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] Length = 459 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 8/162 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 KN+ IV DIETTG ++ RI EI A+ + D ++ + P + P L Sbjct: 2 KNQEYAIV-DIETTGGNASGSRITEI-AIIIHDGKNVLDRYETLVNPE-QDIPPSIFGLT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI +E + + P F I + + ++ ++AHN FD F++ +L++ ++ Sbjct: 59 GINNEMVANAPIFDDISEKVLEMLTDR--IFVAHNVNFDYSFVHHQLEQAGFKW--SAKK 114 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 + T+ AR+ P L +LC I++ +R + G D+ Sbjct: 115 LCTVRAARKIKPGLGSYSLGNLCNSLNISLENRHRAGGDADA 156 >gi|313156971|gb|EFR56403.1| exonuclease [Alistipes sp. HGB5] Length = 255 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 9/110 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67 I FD+ETTG+D+ DRI+EI +++ D + +T ++ N + P EA +HGITD Sbjct: 10 IFFDLETTGVDTAKDRIVEISMAKIMPDGEEIVKTRKL----NPEMHIPEEATAIHGITD 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 E +KD P+F+ + F + ++ N+ +FD+ + E R D Sbjct: 66 EDVKDCPTFAQVAKSLEQFI--RGCDFGGFNSNRFDLPVLVEEFLRAGVD 113 >gi|168492961|ref|ZP_02717104.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC3059-06] gi|183577104|gb|EDT97632.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC3059-06] Length = 816 Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D +N ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--ENGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|241767097|ref|ZP_04764869.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] gi|241362329|gb|EER58323.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] Length = 153 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 8/142 (5%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ + R E+ A+ LLD FQ L G P +L GIT+ Sbjct: 7 VIDFETTGMGPGQGARATEV-AIVLLDNGVVVDRFQS-LMKTGAWIPPFITQLTGITNAM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P +++ E F NA +AHNA FD F AEL P T+ + Sbjct: 65 VNAAPQAAAVMREAARFVG--NAPMVAHNAAFDRKFWQAELALAGLP--APHPFACTVLL 120 Query: 130 ARRKHP-SSRNDLNSLCKRYGI 150 +RR +P + + L L +G+ Sbjct: 121 SRRLYPQAPSHKLGMLVDYHGL 142 >gi|255615473|ref|XP_002539676.1| DNA polymerase III epsilon subunit, putative [Ricinus communis] gi|223503630|gb|EEF22707.1| DNA polymerase III epsilon subunit, putative [Ricinus communis] Length = 205 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 13/107 (12%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-------TNRTFQVFLCPNGRKNSPEA 59 +R ++ D ETTG D D++IE+G V DY + TF P G PE+ Sbjct: 2 LRAVILDTETTGTDYVQDKVIELGMVA-FDYCPQTGMIGDVHGTFNQLEDP-GFPIPPES 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 K+H ITDE + K SI E + F + + IAHN++FD F+ Sbjct: 60 TKVHHITDEMVAGK----SINDEEVEAFIKPASIIIAHNSRFDRRFV 102 >gi|295693537|ref|YP_003602147.1| DNA polymerase iii [Lactobacillus crispatus ST1] gi|295031643|emb|CBL51122.1| DNA polymerase III [Lactobacillus crispatus ST1] Length = 318 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 11/158 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITDE 68 + DIETTGL DRI E+G V++ + ++ L + NS A KL+GIT+E Sbjct: 35 MLDIETTGLYPYRDRITELGGVKVRNGQIVDQYTN--LVKFSKNNSVPAFITKLNGITEE 92 Query: 69 -FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K+ EF +F + I +N FD+ F+ Q+ LD + +D L Sbjct: 93 QIVKEGIPAEQAIREFREFIGDD--VIIGYNVNFDLNFLYDLSQKYGLPVLD-NDYVDVL 149 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P R N L +R G I+ H L DS Sbjct: 150 RLARTYYPRERHNRLLDCMQRAG--IAQVEAHHGLQDS 185 >gi|311895419|dbj|BAJ27827.1| putative exonuclease [Kitasatospora setae KM-6054] Length = 235 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 20/164 (12%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG D + RI+ V+ L T +L G EA +HGITD + Sbjct: 11 FDLETTGTDPEESRIVTAAVVDTLGGGVQGAT--TWLLDPGVPIPDEAAAIHGITDAEAR 68 Query: 72 --DKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRIN--------KDPL 118 +P+ +I E E+ A +A NA FD+ ++AEL+R P+ Sbjct: 69 ANGRPAAEAI-EEIARTLAERLAAGRPVVAFNAPFDLSLLDAELRRHGLPTLADRLGGPV 127 Query: 119 DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGA 160 P ++D + + R K+ L +C+ YG+ + + G+ Sbjct: 128 AP--VVDAMVVDRALDKYRKGSRTLQRVCEVYGVELRDAHEAGS 169 >gi|301167502|emb|CBW27085.1| putative exonuclease [Bacteriovorax marinus SJ] Length = 963 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 5/107 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V DIETTG+D D+II++G ++ + + R + + +G K S KL GI Sbjct: 7 RWAVIDIETTGIDPSYDQIIDVGYLQ-FEGTTLVRKYSSLVQYDG-KLSQFIKKLTGIDS 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 + L + PS+ + E D F IAHNA+F+ F++ RI+ Sbjct: 65 KMLINAPSWQVVSPEVMDVFGHH---LIAHNAEFERSFLSDHFARID 108 >gi|294815713|ref|ZP_06774356.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|294328312|gb|EFG09955.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 251 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 21/159 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68 + FD+ETTG D + RI+ VE R + +L G + +A +HGIT E Sbjct: 20 VGFDLETTGTDPREARIVTAAVVEARAGEPVRR--RTWLADPGVRIPAQASAIHGITSER 77 Query: 69 -FLKDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---------RINK 115 + +P+ + +E ++ + +A+NA FD+ + AE++ R+ Sbjct: 78 AAAEGRPAREVADEVAAELCGYWA-RGVPVVAYNAAFDLSLLAAEIRRYGLPSLSDRLGG 136 Query: 116 DPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 P P +ID +I R ++ + L ++ YG+ + Sbjct: 137 RPTGP--VIDPYTIDRAVDRYRKGKRTLEAVSAEYGVPL 173 >gi|32266846|ref|NP_860878.1| DNA polymerase III subunit epsilon [Helicobacter hepaticus ATCC 51449] gi|32262898|gb|AAP77944.1| DNA polymerase III [Helicobacter hepaticus ATCC 51449] Length = 266 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 + DIET G + +IIEIGA+++ K F PE + +L GI Sbjct: 74 VFVDIETNGAKPQQCQIIEIGALKV----KGGEIIDKFESYVYADEVPENITQLTGICQA 129 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTL 127 + PS + EF F ++AHN FD GF++ L++ L+P + T+ Sbjct: 130 DIAYAPSIKEVLGEFRAFLGTD--VFVAHNVNFDYGFVDYHLRQCGLFGLLNPK--LCTI 185 Query: 128 SIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGAL 161 +A++ S R L L + GI ++HR+ AL Sbjct: 186 ELAKKTILSPRYALGFLNEFLGIRTAVTHRAYADAL 221 >gi|307328999|ref|ZP_07608167.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] gi|306885361|gb|EFN16379.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] Length = 240 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 31/175 (17%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-----FQVFLCPNGRKNSPEALKLHG 64 I FD+ETTG D + RI+ VE+ D R QV + P+G A+ +HG Sbjct: 9 IGFDLETTGTDPRTSRIVTAAVVEVRDGEPIGRREWLADPQVPI-PDG------AVAVHG 61 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPL 118 IT+E + S + A W +A+NA FD+ + AEL R PL Sbjct: 62 ITNE--RAAAEGRSAREVVEEVAEVLVAHWRAGAPVVAYNAAFDLSLLAAELGRHGLRPL 119 Query: 119 -------DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + ++D +I R ++ + L ++C YG+ H H A D+ Sbjct: 120 SERLEGAETGPVVDPYTIDRAVDRYRKGKRTLEAVCGEYGVV--HDRAHDAGADA 172 >gi|228914217|ref|ZP_04077833.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845421|gb|EEM90456.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 927 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 10/167 (5%) Query: 12 FDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI + Sbjct: 1 MDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGIDESM 58 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K P F + + Q A ++AHN FD F+ EL++ + + +DT+ + Sbjct: 59 VKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPK-VDTVEL 115 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ P++ + L L K++ + H H A D+ ++++++ + Sbjct: 116 AQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 160 >gi|51969194|dbj|BAD43289.1| unknown protein [Arabidopsis thaliana] Length = 316 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 19/181 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGL +N+RIIEI A ++ + TFQ + P G A +HGI ++ Sbjct: 112 IVSDLETTGLHRENERIIEIAAQDIAGGGYS--TFQTLVNP-GVVPITNA-HIHGIRNDM 167 Query: 70 L--KDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAK-FDVGFINAELQRINKDPLDPS 121 + + P + F + + +AHN K FD F+ E R + + Sbjct: 168 VCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNW 227 Query: 122 RIIDTLSIARRKHPSSR------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++D+L +AR S + L +L Y +T H AL D LLS V+ K+ Sbjct: 228 LLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLT-REGDAHRALSDVLLLSKVFQKLT 286 Query: 176 V 176 + Sbjct: 287 I 287 >gi|227892520|ref|ZP_04010325.1| possible DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ultunensis DSM 16047] gi|227865641|gb|EEJ73062.1| possible DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ultunensis DSM 16047] Length = 370 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 15/170 (8%) Query: 11 VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L GI +E Sbjct: 12 VVDLETTGTQRENGHHIIQFGCA-IIKNLKVVKTYSFMINPH-REIPQSVVNLTGIHNED 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + F + QNA ++AHN FD+ F+N EL + D L ++ IDT+ + Sbjct: 70 VAKEKDFKFYAPKIVKIL--QNAVFVAHNVDFDLPFLNYELTQHGYDALT-NKAIDTVEL 126 Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ P+ +DL S + I H + H A D++ + + IK++ Sbjct: 127 AKIAFPTLPSYKLSDLTS-----QLEIKHLNPHKADSDAYGTAILLIKII 171 >gi|71734762|ref|YP_276473.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555315|gb|AAZ34526.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] Length = 204 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 4 RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVELFQSLM--NAGVRIPAFIEGLTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF +AHNA FD F + EL RI + L+ S Sbjct: 61 SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK-LEQSFACS 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 L +ARR P + N Y + H A+ D+ + +++ Sbjct: 118 ML-LARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 161 >gi|73662598|ref|YP_301379.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642618|sp|Q49XR1|DING_STAS1 RecName: Full=Probable ATP-dependent helicase dinG homolog gi|72495113|dbj|BAE18434.1| putative ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 900 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + + P L I ++ Sbjct: 8 VVDLETTGNQLDYDEIIQIG----ITFVRENKIIGTYHSMIKTDLEIPPFIQALTSIEED 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F I + + + ++AHN FD+ FI ++ + + P +++DTL Sbjct: 64 MLNQAPYFHEIAEDIYKQID--GCIFVAHNVAFDLNFIKKSFKQCHIN-YRPKKVMDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 + + P+ ++ L+ L + +GI + +HR+ A + L+ Sbjct: 121 LFKVAFPTDKSYQLSELAEAHGIILNNAHRADEDAATTAQLM 162 >gi|332703188|ref|ZP_08423276.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus str. Walvis Bay] gi|332553337|gb|EGJ50381.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus str. Walvis Bay] Length = 246 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 8/123 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKL-HGITDE 68 V D E TG+D + D I+ IGAV + + + + + P+ P+A L H IT Sbjct: 51 VLDTELTGMDHRRDEIVSIGAVRIRGMAIQPGANWYAVVRPS---CLPKACTLIHRITPS 107 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P S + EF D+ + + H+ D F+N +RI P+ + +DT+ Sbjct: 108 EVEAAPELSDVLPEFADYLGQSLI--VGHHVGMDAAFLNRACKRILGGPM-ANPCLDTMR 164 Query: 129 IAR 131 +A+ Sbjct: 165 LAQ 167 >gi|256424475|ref|YP_003125128.1| DNA polymerase III subunit epsilon [Chitinophaga pinensis DSM 2588] gi|256039383|gb|ACU62927.1| DNA polymerase III, epsilon subunit [Chitinophaga pinensis DSM 2588] Length = 456 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 7/148 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + + I EI A+ + D + ++ + P G L GITDE + Sbjct: 4 IVDIETTGGHASANGITEI-AIYIYDGRNIVQQYETLINP-GVPIPRYIQSLTGITDEMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P+F + + + +++ ++AHN FD FI L + ++ + T+ + Sbjct: 62 ANAPAFDEVAGDIFALLHDKI--FVAHNVNFDYSFIQYHLAQAGYQLR--TKKLCTVRLG 117 Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSK 157 R+ P L +LCK I+++ R + Sbjct: 118 RKIIPGLPSYSLGNLCKSLEISVTQRHR 145 >gi|325921138|ref|ZP_08183009.1| RNAse T [Xanthomonas gardneri ATCC 19865] gi|325548410|gb|EGD19393.1| RNAse T [Xanthomonas gardneri ATCC 19865] Length = 213 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 17/181 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63 +V D+ET G D ++EI V + +D T L P G + P++L++ Sbjct: 27 PVVVDVETGGFDWNKHALLEIACVPIEMDAEGRFFPGDTASAHLVPAPGLEIDPKSLEIT 86 Query: 64 GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI + F K +K + +F+ + Q A + HNA FD+ F+NA + R+ Sbjct: 87 GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P + DT+++A + + L + G+ + H A+ D+ + ++ K Sbjct: 147 KRNPFHPFSVFDTVTLAGVAY--GQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLFCK 204 Query: 174 M 174 + Sbjct: 205 I 205 >gi|212712065|ref|ZP_03320193.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM 30120] gi|212685587|gb|EEB45115.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM 30120] Length = 214 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + K D ++EI A+ L +D + + T + P G P AL+ G Sbjct: 20 VVIDVETGGFNPKTDGLLEIAAITLKMDKDGWLAIDETLHFHVEPFEGANLEPSALEFTG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFI--NAELQRIN 114 I T+ + + + +IF + A +AHNA FD F+ AE + Sbjct: 80 IDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMNAAERSGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI + HGAL D++ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLVF--GQTILAKACVTAGIPFDGKQAHGALYDTNRTALLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|295835840|ref|ZP_06822773.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] gi|197698852|gb|EDY45785.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] Length = 239 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 19/186 (10%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG D ++DR++ AV LD S + +L G + EA +HGI + Sbjct: 11 FDLETTGTDVEHDRVV-TAAVIRLDASGAVAQTRTWLLDPGIEIPAEATAIHGIPTARAR 69 Query: 72 DK--PSFSSI--FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL------DPS 121 + P+ ++ +E + NA++D+ ++ E +R L +P+ Sbjct: 70 AEGAPARGAVAEITEALAAGLRAGTPLVVMNARYDLSLLDRECRRHGVPALAELLGGEPA 129 Query: 122 RIIDTLSI---ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++D L + A R SR L +LC+ YG+ + S H A D+ L+ + +G Sbjct: 130 PVVDPLVLDKHADRYRRGSRV-LAALCEHYGVRLD--SAHDARSDA--LAATLLARSLGA 184 Query: 179 SQINFG 184 G Sbjct: 185 RHPRLG 190 >gi|329929867|ref|ZP_08283543.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp. HGF5] gi|328935845|gb|EGG32306.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp. HGF5] Length = 971 Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 10/167 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +M+ V D ETTG S D II++G + + +R + ++ P G P L GI Sbjct: 13 EMKFAVLDFETTGNQSA-DEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGI 70 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D PS + E ++ + HN FD F+ L R P RI+D Sbjct: 71 SDSDVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILD 127 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 T+ + PS L + +G + H H A DS L+ Y Sbjct: 128 TMHFLKICFPSLPSYQLGMVSSHFG--LEHDRPHQA--DSDALATAY 170 >gi|62180023|ref|YP_216440.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614147|ref|YP_001588112.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168819183|ref|ZP_02831183.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|198245565|ref|YP_002215700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|81309702|sp|Q57PK2|RNT_SALCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|62127656|gb|AAX65359.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161363511|gb|ABX67279.1| hypothetical protein SPAB_01887 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197940081|gb|ACH77414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205343777|gb|EDZ30541.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086089|emb|CBY95863.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322714491|gb|EFZ06062.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326623447|gb|EGE29792.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 215 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P N PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|224476576|ref|YP_002634182.1| hypothetical protein Sca_1089 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421183|emb|CAL27997.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 895 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 8/160 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG D II+IG + + L + P L I D+ L Sbjct: 8 VVDLETTGNQKDYDDIIQIGITFVKGFEIVGSYHS--LIKTDLEIPPFIQALTSIEDQML 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P F+ + E ++ +++ ++AHN FD+ F+ ++ N P ++IDT+ + Sbjct: 66 TQAPYFNEVAEEIYELM--KDSVFVAHNVAFDLTFLKKAFKKSNI-TYQPRKVIDTVELF 122 Query: 131 RRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 + P+ ++ L+ L + + I + +HR+ A + L+ Sbjct: 123 KIAFPTDKSYQLSELAEYHDIPLENAHRADEDAATTAKLM 162 >gi|21220034|ref|NP_625813.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)] gi|256788866|ref|ZP_05527297.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|289772754|ref|ZP_06532132.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|6822230|emb|CAB70936.1| putative DNA polymerase III [Streptomyces coelicolor A3(2)] gi|289702953|gb|EFD70382.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] Length = 241 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 13/154 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D++ DRI+ A+ + D +L G A +HG+T+E++ Sbjct: 11 AFDTETTGVDTETDRIVS-AALVVQDAPGLRPRVTRWLVNPGVPVPESATAVHGLTEEYV 69 Query: 71 KDKPSF-SSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLD------P 120 + + + + E + EQ + NA FD+ ++ EL+R L P Sbjct: 70 QRHGRWPAPVMYEMAEALTEQARAGRPLVVMNAPFDLTLLDRELRRHRASSLGRWLERTP 129 Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 ++D + + ++ R L LC YG+ + Sbjct: 130 LHVLDPHVLDKHLDRYRKGRRTLTDLCAHYGVEL 163 >gi|319786534|ref|YP_004146009.1| ribonuclease T [Pseudoxanthomonas suwonensis 11-1] gi|317465046|gb|ADV26778.1| ribonuclease T [Pseudoxanthomonas suwonensis 11-1] Length = 219 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 21/183 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE-------LLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +V D+ET G D ++E+ AV LL KT F+ G + P++L+ Sbjct: 31 PVVVDVETGGFDWNRHALLEMAAVPIEMDEQGLLVPGKTAAAH--FIPAPGTEIDPKSLE 88 Query: 62 LHGIT--DEFLKDKP---SFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRI 113 + GI F KP + +F++ Q A + HNA FD+ F+NA + R Sbjct: 89 VTGIVLDHPFRLAKPERDALGHVFNQVRAAVRRNGCQRAILVGHNAHFDLNFVNAAVARS 148 Query: 114 N--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++P P + DT+++ + + L + G+ R H A+ D+ + ++ Sbjct: 149 GHKRNPFHPFSVFDTVTLGGIAY--GQTVLARALQAAGLEWDAREAHSAVYDAEQTAKLF 206 Query: 172 IKM 174 ++ Sbjct: 207 CRI 209 >gi|296101815|ref|YP_003611961.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056274|gb|ADF61012.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 220 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET L I+E+ +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 4 VIDTETCDLQGG---IVEVASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD +R+ P P I T+ +A Sbjct: 59 ADKPWIEEVIPHYYG-----SPWYVAHNASFD--------RRVL--PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 RR P + +L K +++ H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVRTPEGLHHHRALYDCYITAALLIDIM 151 >gi|283457705|ref|YP_003362291.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa DY-18] gi|283133706|dbj|BAI64471.1| DNA polymerase III, epsilon subunit [Rothia mucilaginosa DY-18] Length = 231 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 12/177 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M N +R FD+ETTG+D RI+ + LLD +L G + A Sbjct: 1 MTWMNGLRA-TFDLETTGVDVTTARIVTASLI-LLDPQGNVVRRGEWLADPGVEIPAGAA 58 Query: 61 KLHGITDEFLKD--KPSFSSIF--SEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--IN 114 +HGIT E+ ++ +P+ ++ + N IA NA +D ++ E+ R I Sbjct: 59 AVHGITTEYAREHGRPAREVVWELAGAIGALNLDGVPIIAFNAAYDFSVLHHEMLRHNIA 118 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 L P ++D + + P R L L YG+++ +H S AL LL Sbjct: 119 NGELPPGVVLDPYVLHKHVIPRKRGKRTLEVLAAEYGVSLENAHTSADDALAAERLL 175 >gi|288939927|ref|YP_003442167.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum DSM 180] gi|288895299|gb|ADC61135.1| Exonuclease RNase T and DNA polymerase III [Allochromatium vinosum DSM 180] Length = 225 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 22/175 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEA-LKLHG 64 + D+ETTGLD + D I+ +G V L +D S T R V + ++ PEA +H Sbjct: 42 LAIDLETTGLDQRQDLILSVGYVVLHGPEIDLS-TARHHLVRI----DRSIPEASAVIHQ 96 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD+ + E + IAH+A + GF++ QR L P R++ Sbjct: 97 ITDDQAATGRELEDVLGEVLAALTGRVM--IAHHAGIEQGFLSQACQRCWGRGL-PLRLV 153 Query: 125 DTLSIA-----RRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 DT ++A RR+ P +D L++L RY + H AL D+ +++++ Sbjct: 154 DTQTLAHRTLERRQIPFKASDLRLHALTSRY--NLPRHGAHNALSDALSAAELFL 206 >gi|325955495|ref|YP_004239155.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922] gi|323438113|gb|ADX68577.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922] Length = 466 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 9/152 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69 + DIET G + + I EI A+ L + + +Q + P K P ++ L GIT E Sbjct: 13 IVDIETNGSAAAHGGITEI-AIFLHNGKEIIDEYQTLVNP--EKPIPFHIQTLTGITPEM 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D P F + + + + + A ++AHN FD F++ + + D P ++ T+ + Sbjct: 70 LVDAPRFDEVAKDVYSYL--EKAIFVAHNVSFDFSFLHKQFLDVGID-WKPIKLC-TVRL 125 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160 AR+ P + L SLCK I + R + Sbjct: 126 ARKIFPGYTSYSLGSLCKNLNIPLHDRHRAAG 157 >gi|126665981|ref|ZP_01736961.1| ribonuclease T [Marinobacter sp. ELB17] gi|126629303|gb|EAZ99920.1| ribonuclease T [Marinobacter sp. ELB17] Length = 214 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + D ++EI AV + + T+ + P G +L G Sbjct: 21 VVVDVETAGFNPAKDALLEIAAVMVTMDENGFLHRGETYLQQIDPFEGANFEQSSLDFTG 80 Query: 65 ITD-----EFLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQR--IN 114 I E + ++ S IFS F+ + A + HNA FD F+ A +R I Sbjct: 81 IDPWDPEREAVPEREGLSEIFSPIRKAMKAFDCKRAVLVGHNATFDHNFVFAASERADIK 140 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + L CK I + H A D+ +D++ + Sbjct: 141 RNPFHPFSTFDTATLAGLAY--GHTVLAQACKLARIPFDSKEAHSAAYDAEKTADLFCSI 198 Query: 175 M 175 + Sbjct: 199 V 199 >gi|315585931|gb|ADU40312.1| DNA polymerase III subunit epsilon [Helicobacter pylori 35A] Length = 287 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GI E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVRGGGIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221 >gi|110805628|ref|YP_689148.1| ribonuclease T [Shigella flexneri 5 str. 8401] gi|123147001|sp|Q0T4C2|RNT_SHIF8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|110615176|gb|ABF03843.1| RNase T [Shigella flexneri 5 str. 8401] Length = 215 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDKPSFS--SIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR--I 113 I D D+ + S E + A +AHNA FD F+ A +R + Sbjct: 80 I-DPNDPDRGAVSEYEALHEICKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + L+ C+ G+ H AL D+ + ++ + Sbjct: 139 KRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCE 196 Query: 174 MM 175 ++ Sbjct: 197 IV 198 >gi|308183650|ref|YP_003927777.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4] gi|308065835|gb|ADO07727.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4] Length = 287 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 17/214 (7%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GI E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFGFKT 187 R S R L+ L +GI +SHR+ AL L + + + + F Sbjct: 190 RTILSMRYSLSFLKELLGFGIEVSHRAYADALASYKLFEICLLNLPSYIKTTMDLIDFSK 249 Query: 188 NEDRFFK-----EEKKTVPNISLLKRDKPLFTRI 216 + K ++T P SL +R K LF I Sbjct: 250 CANTLIKRPPRARHQETPPPFSLFERTKGLFNII 283 >gi|294811599|ref|ZP_06770242.1| Putative DNA polymerase III epsilon subunit [Streptomyces clavuligerus ATCC 27064] gi|294324198|gb|EFG05841.1| Putative DNA polymerase III epsilon subunit [Streptomyces clavuligerus ATCC 27064] Length = 287 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 13/154 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D +NDRI+ AV + D + +L G P A ++HG+TD+ + Sbjct: 57 AFDTETTGVDVENDRIVA-AAVVVQDMAGGRPRITRWLINPGIPVPPGATEVHGLTDDHV 115 Query: 71 KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLD------P 120 + + + + E A + NA FD+ ++ EL+R PL P Sbjct: 116 QRNGRWPAPVLEEVAKTVAGHCAAGRPLVVMNAPFDLTILDRELRRHRATPLSRYLEHTP 175 Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 ++D + ++ ++ R L LC +Y + + Sbjct: 176 LTVLDPRVLDKQLDRYRKGRRSLVDLCSQYEVVL 209 >gi|16760479|ref|NP_456096.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764782|ref|NP_460397.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141761|ref|NP_805103.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413597|ref|YP_150672.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167551596|ref|ZP_02345350.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994263|ref|ZP_02575355.1| ribonuclease T [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229807|ref|ZP_02654865.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235505|ref|ZP_02660563.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240948|ref|ZP_02665880.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264727|ref|ZP_02686700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194451220|ref|YP_002045472.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469134|ref|ZP_03075118.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737431|ref|YP_002114446.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251543|ref|YP_002146611.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264202|ref|ZP_03164276.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362521|ref|YP_002142158.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200389402|ref|ZP_03216013.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213426003|ref|ZP_03358753.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586461|ref|ZP_03368287.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609934|ref|ZP_03369760.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649691|ref|ZP_03379744.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855187|ref|ZP_03383427.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238913165|ref|ZP_04657002.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289805704|ref|ZP_06536333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824912|ref|ZP_06544333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54039259|sp|P66685|RNT_SALTI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|54042002|sp|P66684|RNT_SALTY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|81821446|sp|Q5PH07|RNT_SALPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|25356018|pir||AD0695 ribonuclease T [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419954|gb|AAL20356.1| RNase T [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502775|emb|CAD01933.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi] gi|29137389|gb|AAO68952.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127854|gb|AAV77360.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194409524|gb|ACF69743.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455498|gb|EDX44337.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712933|gb|ACF92154.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093998|emb|CAR59494.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197215246|gb|ACH52643.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242457|gb|EDY25077.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291124|gb|EDY30477.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199601847|gb|EDZ00393.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205323544|gb|EDZ11383.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327828|gb|EDZ14592.1| ribonuclease T [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335262|gb|EDZ22026.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339447|gb|EDZ26211.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205346854|gb|EDZ33485.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261246638|emb|CBG24448.1| Exoribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993323|gb|ACY88208.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157967|emb|CBW17462.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912417|dbj|BAJ36391.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224052|gb|EFX49115.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129704|gb|ADX17134.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988319|gb|AEF07302.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 215 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P N PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|326803711|ref|YP_004321529.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae ACS-120-V-Col10a] gi|326651377|gb|AEA01560.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae ACS-120-V-Col10a] Length = 890 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 11/168 (6%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG ++ DRII+IG V L+ K F+ + P P+ + L GI E Sbjct: 7 VVDLETTGTKYNRGDRIIQIGVV-FLEGQKKIGEFKSNIQP--LIPVPKNISDLTGIQTE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P F I + F Q+ ++AHN FD F++A + + LD IDT+ Sbjct: 64 DLRDAPLFEDIAPDL--FQQLQDCVFVAHNINFDYKFLSASFEGVGLPALDLEG-IDTVE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R +P + + L +GI + H A+ D+ + + +++M Sbjct: 121 LIRVLYPQAASYKLGDFSLDHGINLV--KAHTAIEDARATAQLLVQVM 166 >gi|118602537|ref|YP_903752.1| ribonuclease T [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567476|gb|ABL02281.1| RNAse T [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 195 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 92/192 (47%), Gaps = 21/192 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD-----YSKTNRTFQVFLCPN 51 M+ K+++R +V D ET G + K D ++EI A+ + +D Y K ++ F + Sbjct: 1 MLIKDRIRGYLPVVIDTETGGFNEKTDAMLEICAIVIGIDKMNNLYPKGSQHFHIEPFKG 60 Query: 52 GRKNSPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDV 103 G S ALK +GI + +K+ + I+++ + +++ A + HNA FD+ Sbjct: 61 GMLES-SALKFNGIDVDNPFRMAVKEIDAIKQIYTKVYAELKQESCTRAILVGHNAFFDL 119 Query: 104 GFINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 GF++A R K P +DT+S++ + + L ++ I H AL Sbjct: 120 GFLHAATDRCKLKSPFHQFSTLDTVSLSALHYGETV--LAKAMRKANIEWDDSCAHSALY 177 Query: 163 DSHLLSDVYIKM 174 D+ ++++ K+ Sbjct: 178 DTQKTAELFCKI 189 >gi|260063099|ref|YP_003196179.1| hypothetical protein RB2501_15959 [Robiginitalea biformata HTCC2501] gi|88784668|gb|EAR15838.1| hypothetical protein RB2501_15959 [Robiginitalea biformata HTCC2501] Length = 375 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 9/164 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V DIETTG + I EI A+ D + TF + P R P KL GI Sbjct: 1 MTYAVLDIETTGGKFDEEGITEI-AIHRFDGHEVVDTFISLINPE-RPIQPYVQKLTGID 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ P F + + +++ +AHNA+FD + E +R+ + + + T Sbjct: 59 PKMVQTAPRFHQVAKRIVEI--TRDSVLVAHNAQFDYRILRTEFRRLGYN--FERKTLCT 114 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITIS--HRSKHGALLDSHLL 167 + +++R P + + L L + GI +S HR+ AL LL Sbjct: 115 VDLSQRLIPDAESHSLGKLVRSLGIPVSNRHRANGDALATLKLL 158 >gi|262279766|ref|ZP_06057551.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202] gi|262260117|gb|EEY78850.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202] Length = 220 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 22/185 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI + ++ ++ F + P G +L G Sbjct: 24 VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRI 113 I D F ++ + IF + +Q+ A + HNA FD+GF+ A + R Sbjct: 84 I-DPFNPMRMAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQAAIART 142 Query: 114 ---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 N++P ++DT++++ + L C + GI + H AL D+ +++ Sbjct: 143 STKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDTQKTAEL 200 Query: 171 YIKMM 175 + ++ Sbjct: 201 FCYIL 205 >gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1419 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FDIETTGL+ D I+E+ + ++ N TF + P R SP + +H IT+ Sbjct: 764 RIVFFDIETTGLNPSTDAIVEVAMFDPIE----NSTFHTLVNPQ-RPISPRTVGIHHITN 818 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 E ++D P+ + + A + H VG Sbjct: 819 EMVRDAPTVDVVAKSIGQYLRLDMASYNPHEILVLVG 855 >gi|255029619|ref|ZP_05301570.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes LO28] Length = 132 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 8/131 (6%) Query: 8 RKIVFDIETTG-LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE--KPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +K+ P F + + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS 136 T+ +AR +P Sbjct: 119 TVELARIMYPG 129 >gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei] Length = 1404 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+ K R +VFDIE+TGL++ D IIE+ A + ++ +F + P R P++ + Sbjct: 757 RRRKYRLVVFDIESTGLNTATDAIIEVAAFDPVE----GTSFSSLVNPQ-RPIPPQSTAI 811 Query: 63 HGITDEFLKDKPSFSSIFSEF 83 H ITD ++ P S + F Sbjct: 812 HHITDSMVQGAPRLSEVTQAF 832 >gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei TREU927] gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma brucei] gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 1404 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+ K R +VFDIE+TGL++ D IIE+ A + ++ +F + P R P++ + Sbjct: 757 RRRKYRLVVFDIESTGLNTATDAIIEVAAFDPVE----GTSFSSLVNPQ-RPIPPQSTAI 811 Query: 63 HGITDEFLKDKPSFSSIFSEF 83 H ITD ++ P S + F Sbjct: 812 HHITDSMVQGAPRLSEVTQAF 832 >gi|293608826|ref|ZP_06691129.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|299771039|ref|YP_003733065.1| ribonuclease T [Acinetobacter sp. DR1] gi|292829399|gb|EFF87761.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|298701127|gb|ADI91692.1| ribonuclease T [Acinetobacter sp. DR1] gi|325121407|gb|ADY80930.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter calcoaceticus PHEA-2] Length = 220 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 22/185 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI + ++ ++ F + P G +L G Sbjct: 24 VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRI 113 I D F ++ + IF + +Q+ A + HNA FD+GF+ A + R Sbjct: 84 I-DPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQAAIART 142 Query: 114 ---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 N++P ++DT++++ + L C + GI + H AL D+ +++ Sbjct: 143 STKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDTQKTAEL 200 Query: 171 YIKMM 175 + ++ Sbjct: 201 FCYIL 205 >gi|168463155|ref|ZP_02697086.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195634173|gb|EDX52525.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 215 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P N PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|323439142|gb|EGA96870.1| DNA polymerase III alpha chain [Staphylococcus aureus O11] gi|323441573|gb|EGA99223.1| DNA polymerase III alpha chain [Staphylococcus aureus O46] Length = 157 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 9/155 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + K I +G V+++D S+ TF + P S + +K+HGI E Sbjct: 7 VALDFETA--NGKRTSICSVGMVKVID-SQITETFHTLVNPQDYF-SQQNIKVHGIQPED 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P+F +F F + +AHNA FD+ ++ +Q I P + + Sbjct: 63 VENAPTFDYVFPYMMQFIAD--LPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQL 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A+R S R L + + Y + H AL D+ Sbjct: 120 AKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDA 152 >gi|194445493|ref|YP_002040683.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404156|gb|ACF64378.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 215 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P N PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|323699453|ref|ZP_08111365.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio sp. ND132] gi|323459385|gb|EGB15250.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio desulfuricans ND132] Length = 178 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 12/174 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + +R + D ET D K D +G V + R +++ P R N P + Sbjct: 1 MPTLDDVRFVAIDFETA--DPKRDSACALGIVVVDRGEIVARDYRLIRPPRARFN-PFCV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRIN-KDPL 118 ++HGI E + ++PSF ++ E F + A++ +AHNA FD ++ + P Sbjct: 58 RVHGIHWEDVCNEPSFGDLWPELEVHF--RGADFLVAHNAAFDKSVLHTCCKESGWTAPE 115 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + T+ +AR+ S N L ++C+ GI ++H H A D+ + + + Sbjct: 116 QP--FLCTVQLARKTWELSCNKLPNVCEYLGIELNH---HNAASDAEACALIAV 164 >gi|255534839|ref|YP_003095210.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10] gi|255341035|gb|ACU07148.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10] Length = 254 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 9/141 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 +FD+ETTG++ DRI+EI +++ D S+ ++T+ V N P E+ ++HGI+D+ Sbjct: 11 IFDLETTGVNVAKDRIVEISILKVNPDGSRESKTWLV----NPEMYIPKESTEIHGISDD 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127 +K+ P F I + + + N +FDV + EL R D L +++D Sbjct: 67 DVKNSPKFKEIAPKVMEMITGTDLGGFNSN-RFDVPLLAEELLRAGIDFDLTKFKLVDVQ 125 Query: 128 SIARRKHPSSRN-DLNSLCKR 147 +I + P + + N CK+ Sbjct: 126 TIYHKMEPRNLSAAYNFYCKK 146 >gi|312867475|ref|ZP_07727684.1| putative ATP-dependent DNA helicase DinG [Streptococcus parasanguinis F0405] gi|311097176|gb|EFQ55411.1| putative ATP-dependent DNA helicase DinG [Streptococcus parasanguinis F0405] Length = 817 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 87/172 (50%), Gaps = 10/172 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + K + + D+E T S N +II++G V + D T ++++ + P+ R + +L Sbjct: 3 RQKRKYAIVDLEATSAGS-NAKIIQVGIVIVEDGVIT-QSYETDVNPHERLDE-HIKQLT 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 G+TD L+ P F+ + E ++ ++A ++AHN KFD + L + P Sbjct: 60 GLTDARLRKAPEFAQVAKEIFELI--EDAVFVAHNVKFDANLLAEALFWEGFELTTPR-- 115 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +++ +P+ R +L +L I + H H AL D+ + + +K+ Sbjct: 116 IDTVELSQIFYPTLERYNLGALAAELQIELHH--AHSALADAMATAQLLLKV 165 >gi|114562725|ref|YP_750238.1| exonuclease, RNase T and DNA polymerase III [Shewanella frigidimarina NCIMB 400] gi|114334018|gb|ABI71400.1| Exonuclease, RNase T and DNA polymerase III [Shewanella frigidimarina NCIMB 400] Length = 229 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 19/165 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+E TGLD +D++I IG V +++ ++ + + +G ++ +HGI D Sbjct: 44 MAIDLEMTGLDPIHDQVISIGLVPIINGVIPLDKAQHMMISISGSVG--QSATVHGIVDN 101 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWI--AHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L + +E D+F + +I AH+A D+ FI +L R + P IDT Sbjct: 102 QLH----MALTLAEAIDWFLSKTKGYILVAHHAPLDIQFIQQQLIRCFGQSI-PLVFIDT 156 Query: 127 LSIARRK----HPSSRND---LNSLCKRYGITISHRSKHGALLDS 164 L+I +++ P + LN+ RY + + S H AL+D+ Sbjct: 157 LAIEKKRCLMQQPVLKEGSLRLNASRTRYRLPV--YSAHNALIDA 199 >gi|307326746|ref|ZP_07605938.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] gi|306887509|gb|EFN18503.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] Length = 241 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 21/159 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D ++DRI+ A+ + + + + +L G P A ++HG+TD L Sbjct: 11 AFDTETTGVDVEHDRIVS-AALVVQRGTGSLPEIRRWLVSPGVPVPPAATEIHGLTDAHL 69 Query: 71 KDKPSF-SSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR------------IN 114 + + + + E EQ A + NA FD+ ++ EL+R + Sbjct: 70 QRHGRWPAPVMDEMARAIAEQTARGTPLVVMNAPFDLTLLDRELKRHRNSSLAGYLSLRS 129 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153 LDP R++D RK R L LC YG+ ++ Sbjct: 130 MSVLDP-RVLDKHLDRYRK---GRRTLLDLCAHYGVELT 164 >gi|261406087|ref|YP_003242328.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. Y412MC10] gi|261282550|gb|ACX64521.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. Y412MC10] Length = 958 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 10/166 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D ETTG S D II++G + + +R + ++ P G P L GI+ Sbjct: 1 MKFAVLDFETTGNQSA-DEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D PS + E ++ + HN FD F+ L R P RI+DT Sbjct: 59 DSDVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILDT 115 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + PS L + +G + H H A DS L+ Y Sbjct: 116 MHFLKICFPSLPSYQLGMVSSHFG--LEHDRPHQA--DSDALATAY 157 >gi|157145382|ref|YP_001452701.1| exodeoxyribonuclease X [Citrobacter koseri ATCC BAA-895] gi|157082587|gb|ABV12265.1| hypothetical protein CKO_01122 [Citrobacter koseri ATCC BAA-895] Length = 220 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++ N L R SP+A+ +H I++ + Sbjct: 4 VIDTETCGLQGG---IVEIASVDVVAGRIVNPMSH--LVRPDRPISPQAMAIHRISESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP I + +EW +AHNA FD +R+ P P I T+ + Sbjct: 59 ADKPWIEDIIPLY------HGSEWYVAHNASFD--------RRVL--PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 +RR P + +L K +++ H AL D ++ + + I +M Sbjct: 103 SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|89891036|ref|ZP_01202544.1| putative DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] gi|89516680|gb|EAS19339.1| putative DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] Length = 255 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 7/107 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 FD+ETTG++ DRI+EI ++L D ++ T++V N P A +HGITD+ Sbjct: 12 FDLETTGVNISKDRIVEIAIHKVLPDGTEKTYTYRV----NPTVPIPAATTAVHGITDDM 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 +KD+P+F + E + + + N +FD+ + E+ R D Sbjct: 68 VKDEPTFKELAHEIHNIIKDSDLAGFNSN-RFDIPLLAEEMLRAGVD 113 >gi|72161306|ref|YP_288963.1| DNA polymerase III subunit epsilon [Thermobifida fusca YX] gi|71915038|gb|AAZ54940.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX] Length = 210 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 6/92 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + +HGIT E + D P++ + + +F + ++AHNA FD+G I A + Sbjct: 55 IAVHGITPEHVADAPAWPQVHTTILEF--AAGSPFVAHNAVFDMGVIRAACAHAGLP--E 110 Query: 120 PS-RIIDTLSIARRKHPSSRND-LNSLCKRYG 149 PS +L IARR P+ RN L ++C+ G Sbjct: 111 PSLHYACSLDIARRTWPALRNHRLPTVCRTIG 142 >gi|307131423|ref|YP_003883439.1| ribonuclease T (RNase T) [Dickeya dadantii 3937] gi|306528952|gb|ADM98882.1| ribonuclease T (RNase T) [Dickeya dadantii 3937] Length = 225 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 24/199 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L +D S + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDETLHFHIEPFEGAILRPEALAFNG 79 Query: 65 I---------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 I E+ F ++ D N +AHNA FD F+ A +R + Sbjct: 80 IDPANPLRGAVSEYEALHEIFKAVRKGIKD-LNCNRGIIVAHNATFDHSFLMAAAERCGL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C I H AL D+ + ++ + Sbjct: 139 KRNPFHPFATFDTAALSGLV--LGQTVLAKACIAAEIPFDASQAHSALYDTERTAQLFCE 196 Query: 174 MM-----VGGSQINFGFKT 187 ++ +GG + G T Sbjct: 197 LVNRWKRMGGWPLASGTDT 215 >gi|332674336|gb|AEE71153.1| DNA-directed DNA polymerase III epsilon subunit [Helicobacter pylori 83] Length = 287 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GI E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221 >gi|331006083|ref|ZP_08329419.1| Ribonuclease T [gamma proteobacterium IMCC1989] gi|330420120|gb|EGG94450.1| Ribonuclease T [gamma proteobacterium IMCC1989] Length = 201 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 29/187 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S+ D ++E+ A L ++ ++ + P G AL G Sbjct: 11 VVIDVETGGFNSRTDALLEVSAATLAMDDEGILSIDQLYEYHVTPFEGANIEQSALDFTG 70 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNE--------------QNAEWIAHNAKFDVGFINAEL 110 I E P ++I E D NE A +AHNA FD+GF+N Sbjct: 71 IDLE----NPDRNAIPEE--DMLNELFRVIRKAVKRNDCTRAIMVAHNAHFDLGFVNEAA 124 Query: 111 QR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 +R + ++P P +DT +++ L C+ I S++ H A D+ + Sbjct: 125 ERCGMKRNPFHPFSCMDTATLSGLAF--GHTVLAQACQLAKIGFSNKEAHAASYDTRKTA 182 Query: 169 DVYIKMM 175 +++ ++ Sbjct: 183 ELFCVIV 189 >gi|318076131|ref|ZP_07983463.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] Length = 384 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 17/170 (10%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDEFL 70 FD+ETTG D + DRI+ AV LD S T + +L G + EA +HGI T Sbjct: 11 FDLETTGTDVEQDRIVTA-AVIRLDSSGTVAHTRTWLLDPGVEIPAEATAIHGIPTARAR 69 Query: 71 KDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL------DPS 121 D +E + + + NA++D+ ++ E +R L +P+ Sbjct: 70 ADGAPARGAVAEITEALAAELRAGTPLVVMNARYDLSLLDRECRRHGVPALAELLGAEPA 129 Query: 122 RIIDTLSI---ARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHL 166 +ID L + A R SR L +LC YG+ + +H ++ AL + L Sbjct: 130 PVIDPLVLDKHADRYRRGSRV-LAALCAHYGVRLDTAHDARSDALAATLL 178 >gi|71066188|ref|YP_264915.1| ribonuclease T [Psychrobacter arcticus 273-4] gi|71039173|gb|AAZ19481.1| RNAse T [Psychrobacter arcticus 273-4] Length = 239 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 20/191 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R K +V D+ET G +++ D ++EI + +L + + P G P Sbjct: 29 RFRKFLPVVVDVETAGFNAQTDALLEIACIPVLMNEQGVFYPGEALNAHIEPFEGANLEP 88 Query: 58 EALKLHGI-TDEFLK------DKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFIN 107 AL GI + L+ +K + IF + ++ I HNA FD+ F+N Sbjct: 89 SALAFTGIDPNNPLRKAIAEDEKTALRRIFKGLKEVRRNEDCRQCVLIGHNAHFDLAFLN 148 Query: 108 AELQRINK---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R N +P + DT++++ + L CK G+ H AL D+ Sbjct: 149 AAVLRTNNKSHNPFHNFSVFDTVTLSALAF--GQTVLARACKAAGLDFDGNDAHSALYDT 206 Query: 165 HLLSDVYIKMM 175 ++++ ++ Sbjct: 207 QKTAELFCYIL 217 >gi|42523607|ref|NP_968987.1| DNA polymerase III subunit epsilon [Bdellovibrio bacteriovorus HD100] gi|39575813|emb|CAE79980.1| DNA polymerase III polC-type [Bdellovibrio bacteriovorus HD100] Length = 295 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 19/107 (17%) Query: 11 VFDIETTGLDSKNDRIIEIG---------AVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + D+ETTGL+ D IIEIG + E+L +K+ +FQ G+ SPE Sbjct: 48 ILDVETTGLNQTEDTIIEIGIRQFLFNKNSGEVLAVTKSYSSFQ----DPGKPISPEIQA 103 Query: 62 LHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 L GITDE + K ++++ D + IAHNAKFD FI+ Sbjct: 104 LTGITDEMVAGKQIDWTAV-----DALLNECQLIIAHNAKFDRPFID 145 >gi|312959243|ref|ZP_07773761.1| ribonuclease T [Pseudomonas fluorescens WH6] gi|311286503|gb|EFQ65066.1| ribonuclease T [Pseudomonas fluorescens WH6] Length = 225 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCP-NGRKNSPEALKL 62 +V D+ET G + D ++EI A + Y + F+V P G AL+ Sbjct: 33 VVIDVETGGFNCATDALLEIAATTIGMDEQGFVYPEHTHFFRVE--PFEGANIEAAALEF 90 Query: 63 HGI-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN 114 GI D L+ ++ + + IF + A + HN+ FD+GF+NA + R++ Sbjct: 91 TGIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLD 150 Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 151 MKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFC 208 Query: 173 KMM 175 ++ Sbjct: 209 GIV 211 >gi|146309558|ref|YP_001190023.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp] gi|145577759|gb|ABP87291.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas mendocina ymp] Length = 235 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 7/131 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGLD + I+ +G V L L + + + P G + S E++ H IT Sbjct: 46 VALDVETTGLDPREHAIVSLGLVPLNLQRIRCSEARYWVVKPAG-ELSAESVTFHHITHS 104 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127 ++ P +S+ E + + +AH + F++ L+R + + + P IIDT+ Sbjct: 105 DIRHAPRLASVLDELLEALAGKVV--VAHYRHIERSFLDQALRRHLGEGLIFP--IIDTM 160 Query: 128 SIARRKHPSSR 138 + R HP R Sbjct: 161 ELEARLHPKRR 171 >gi|241894744|ref|ZP_04782040.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides ATCC 33313] gi|241871956|gb|EER75707.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides ATCC 33313] Length = 177 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 15/171 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG---RKNSPEALKLH 63 M I D ET +K + +G + D +K F + P+ ++N+ ++H Sbjct: 1 MNFIAMDFETAS--AKRYSAVSLGLAVVRD-NKLVDEFYTLIKPDSFFDKRNT----RIH 53 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT+ +++ P F ++ + F+ N IAHNA FD G + L + D L Sbjct: 54 GITEADVRNAPIFPEVWEQIQQFYTP-NQLVIAHNAPFDNGVLRETLTHYDID-LPHYLS 111 Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +DT+ +R+ +P N LN++ GI + H H AL D+ +++ ++ Sbjct: 112 LDTVRTSRKLYPELPNHKLNTVAAALGIDLKHH--HNALNDTVAAAEILVR 160 >gi|74026182|ref|XP_829657.1| exonuclease [Trypanosoma brucei TREU927] gi|70835043|gb|EAN80545.1| exonuclease, putative [Trypanosoma brucei] Length = 366 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 10/137 (7%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-------DYSKTNRTFQVFLCPNGRKN 55 R + + D+ETTG+ D II I VELL + + R+F + P +K Sbjct: 97 RLQPLSAVCIDVETTGIAPTKDEIISIAVVELLFGAAGHNQWELSGRSFHRLVKPT-KKV 155 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRIN 114 S A ++H +T + L+ +P F++I + F ++ + + A D+ + + Sbjct: 156 SSSAYRVHKLTSKVLERQPPFAAILPDLAAFLSDVRSGSTS-TAAGDIHYKGPGGTNNVE 214 Query: 115 KDPLDPSRIIDTLSIAR 131 + PL T+S++R Sbjct: 215 RVPLSSGGAAATVSVSR 231 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Query: 95 IAHNAKFDVGFINAELQRINKDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152 IAHNA FD F+ R + + S + T+S+ R +P +L C GI Sbjct: 266 IAHNAAFDRNFLYQSALRNGWEVVWDKQSPLTCTMSMFRALYPECPTNLTKACSLAGIDA 325 Query: 153 SHRS-KHGALLDSHLLSDVYIKM 174 + R +H AL D+ L ++I + Sbjct: 326 AGREDRHDALQDAQLCGHLFIYL 348 >gi|317179729|dbj|BAJ57517.1| DNA polymerase III subunit epsilon [Helicobacter pylori F30] Length = 287 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GI E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221 >gi|282598821|ref|YP_003359140.1| putative exonuclease [Clavibacter phage CMP1] gi|262212609|gb|ACY35945.1| putative exonuclease [Clavibacter phage CMP1] Length = 236 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 13/184 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M R +K+ +VFD ET+G+D +NDRI+ + L+D T F +L G A Sbjct: 1 MPRVDKI--MVFDTETSGVDVENDRIV-TAFIGLMDPDGTMTEFHEWLIDPGIPIPEGAS 57 Query: 61 KLHGITDE--FLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114 +HGIT E + + E D+ + N + NA +D+ ++ EL+R Sbjct: 58 DIHGITTEKAHAEGRKDIDKALMEIATKLDYASRWNYPVVIMNAPYDLTILDRELRRHVG 117 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 K+ P+ ++DT I ++ + + L L + YG+ + + H A D + V Sbjct: 118 IKNFRAPNVVLDTFVIDKKLYTFRKGSRKLVDLARIYGVPVEENA-HDAQADCRMAGRVT 176 Query: 172 IKMM 175 +K + Sbjct: 177 LKQL 180 >gi|27383194|ref|NP_774723.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] gi|27356368|dbj|BAC53348.1| bll8083 [Bradyrhizobium japonicum USDA 110] Length = 304 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 47/104 (45%), Gaps = 11/104 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV------FLCPNGRKNSPEALK 61 R + D+ETTGLD D I+EI V DYS R F V F P GR PE Sbjct: 46 RAVFIDLETTGLDPVADEIVEIAMVP-FDYSDDGRIFAVHESFARFRDP-GRPIPPEVSA 103 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + GITD + + +E F + A +AHN FD F Sbjct: 104 MTGITDAMVAGA---AIEPAEIEAFLGDTAALVVAHNCSFDRRF 144 >gi|317181232|dbj|BAJ59018.1| DNA polymerase III subunit epsilon [Helicobacter pylori F32] Length = 287 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GI E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221 >gi|268592614|ref|ZP_06126835.1| ribonuclease T [Providencia rettgeri DSM 1131] gi|291311752|gb|EFE52205.1| ribonuclease T [Providencia rettgeri DSM 1131] Length = 214 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G P AL G Sbjct: 20 VVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSMDETLHFHVEPFEGANLEPSALAFTG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFI--NAELQRIN 114 I T+ + + + +IF + A +AHNA FD F+ AE + Sbjct: 80 IDPTNPLRGAVSEYEALHAIFKVIRKGMKNTDCNRAIIVAHNANFDHSFVMNAAERAGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI + HGAL D++ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLVF--GQTILAKACVSAGIPFDGKQAHGALYDTNRTALLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW] gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW] Length = 212 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 14/170 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + + IG + + + RT + + P + +P + +HGI E Sbjct: 8 LAIDFETA--NEQRASACSIGLCRV-ENGRVVRTAEYLIRPPELRFTPFTIAIHGIRPED 64 Query: 70 LKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P F I WD + A +AHNA FD+ + A L D + TL Sbjct: 65 VVDAPEFPDI----WDAMRPELEGAVLLAHNASFDMSVLRAMLGTYGLAVPDHGYLC-TL 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ARR P ++ LN L +++GI + H H A D+ + + ++ M Sbjct: 120 VAARRAWPDLEKHRLNHLARQFGIELEH---HRAGSDARACAAIALRAMA 166 >gi|300214468|gb|ADJ78884.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius CECT 5713] Length = 929 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 13/168 (7%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRT---FQVFLCPNGRKNSPEALKLHGIT 66 V D+ETTG +D+II+ D+ ++N+ F + P G E KL GI Sbjct: 9 VVDLETTGPKQDGSDKIIQFSC----DFVQSNKIVNHFSTLINP-GMPIPAEVKKLTGIK 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++ P F + + QN ++AHN FD F+++EL+R L+ ++DT Sbjct: 64 NKDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELELP-MMDT 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + + +P+ + +Y + +SH H A D+ +++ I + Sbjct: 121 VQLTQIIYPTLVSYRLIDVSKY-LQLSHIHPHKADSDTKATAELLINL 167 >gi|86130357|ref|ZP_01048957.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] gi|85819032|gb|EAQ40191.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] Length = 466 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 7/148 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTG +RI E AV L D ++ F + P + P L GI D + Sbjct: 11 IIDVETTGKGINGNRITEFCAVRLKDGEIIDK-FTSLVNPE-QYIPPFITNLTGIDDAMV 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P F I + + A ++AHN FD I E +R+ + + + T+ ++ Sbjct: 69 EDAPLFEEIAQRVLEI--TEGAIFVAHNVNFDFNVIKGEFKRLGVSFV--RKKLCTVRLS 124 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157 R+ P+ + L +LC GI +++R + Sbjct: 125 RKLIPNLFSYSLGNLCASIGIPLNNRHR 152 >gi|308062811|gb|ADO04699.1| DNA polymerase III subunit epsilon [Helicobacter pylori Cuz20] Length = 287 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GI E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221 >gi|330811888|ref|YP_004356350.1| exonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379996|gb|AEA71346.1| Putative exonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 203 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 17/173 (9%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65 R V D ETTG+ S + R EI AV +L+ + +Q + N P + +L GI Sbjct: 3 RIAVIDFETTGITPSSSCRATEI-AVVMLEQGRIVDRYQSLM--NAGVRVPAFIEQLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ L+ PS + +E +F +AHNA FD F + EL RI + L Sbjct: 60 SNAMLRSAPSAEKVMNEVNEFVG--ITPLLAHNAAFDQKFWDFELGRIKRTRLQ--NFAC 115 Query: 126 TLSIARRKHPSSRN----DLNSLCKRYGITISHR----SKHGALLDSHLLSDV 170 +L +ARR P++ N LN+ +HR ++ A L +HL S + Sbjct: 116 SLLLARRLMPAAPNHKLGTLNTFAGLPHTGQAHRAMADAEMAANLTAHLASQL 168 >gi|254392979|ref|ZP_05008143.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|197706630|gb|EDY52442.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 240 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 21/159 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68 + FD+ETTG D + RI+ VE R + +L G + +A +HGIT E Sbjct: 9 VGFDLETTGTDPREARIVTAAVVEARAGEPVRR--RTWLADPGVRIPAQASAIHGITSER 66 Query: 69 -FLKDKPS---FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ---------RINK 115 + +P+ + +E ++ + +A+NA FD+ + AE++ R+ Sbjct: 67 AAAEGRPAREVADEVAAELCGYWA-RGVPVVAYNAAFDLSLLAAEIRRYGLPSLSDRLGG 125 Query: 116 DPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 P P +ID +I R ++ + L ++ YG+ + Sbjct: 126 RPTGP--VIDPYTIDRAVDRYRKGKRTLEAVSAEYGVPL 162 >gi|41406411|ref|NP_959247.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp. paratuberculosis K-10] gi|254773395|ref|ZP_05214911.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp. avium ATCC 25291] gi|41394760|gb|AAS02630.1| DnaQ [Mycobacterium avium subsp. paratuberculosis K-10] Length = 329 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L K ++ L P P +HG+T L Sbjct: 19 VIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 +D+P F+ I + + + +AHN FD F+ AE + + P+D ++ T+ + Sbjct: 76 EDQPQFADIAGDVVEVLRGRT--LVAHNVAFDYAFLAAEAELAGIELPVD--TVMCTVEL 131 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L +G+T + H A D+ +L+ V + Sbjct: 132 ARRLDLGIDNLRLETLAAHWGVT--QQRPHDAFDDAMVLTGVLASAL 176 >gi|261343971|ref|ZP_05971616.1| ribonuclease T [Providencia rustigianii DSM 4541] gi|282568361|gb|EFB73896.1| ribonuclease T [Providencia rustigianii DSM 4541] Length = 214 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + K D ++EI A+ L +D + + T + P G P AL G Sbjct: 20 VVIDVETGGFNPKTDGLLEIAAITLKMDNEGWLSIDETLHFHVEPFEGANLEPAALAFTG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFI--NAELQRIN 114 I T+ + + + +IF + A +AHNA FD F+ AE + Sbjct: 80 IDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMNAAERSGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI + HGAL D++ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLVF--GQTILAKACVTAGIPFDGKQAHGALYDTNRTALLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|253700819|ref|YP_003022008.1| exonuclease RNase T and DNA polymerase III [Geobacter sp. M21] gi|251775669|gb|ACT18250.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M21] Length = 312 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 12/125 (9%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS- 56 ++RK R + D ETTGLD K D++IE+G V +T F++ +G ++ Sbjct: 43 LVRKAPERCQVALCLDTETTGLDYKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDPG 102 Query: 57 ---PEALK-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 PE +K + GI+D+ ++ + + F + E++ IAHNA FD F+ A Sbjct: 103 VPIPEEVKEITGISDDMVRGQ----AFDDPFINLLAEKSHLVIAHNAAFDRKFVEARFPA 158 Query: 113 INKDP 117 K P Sbjct: 159 FTKLP 163 >gi|146386891|pdb|2IS3|A Chain A, Crystal Structure Of Escherichia Coli Rnase T gi|146386892|pdb|2IS3|B Chain B, Crystal Structure Of Escherichia Coli Rnase T gi|146386893|pdb|2IS3|C Chain C, Crystal Structure Of Escherichia Coli Rnase T gi|146386894|pdb|2IS3|D Chain D, Crystal Structure Of Escherichia Coli Rnase T Length = 215 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKXDEQGWLXPDTTLHFHVEPFVGANLQPEALAFNG 79 Query: 65 ITDEFLKDKPSFSSIFSEFWDFF----------NEQNAEWIAHNAKFDVGFINAELQR-- 112 I D D+ + S + + F A +AHNA FD F A +R Sbjct: 80 I-DPNDPDRGAVSE-YEALHEIFKVVRKGIKASGCNRAIXVAHNANFDHSFXXAAAERAS 137 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++P P DT ++A + L+ C+ G H AL D+ + ++ Sbjct: 138 LKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGXDFDSTQAHSALYDTERTAVLFC 195 Query: 173 KMM 175 +++ Sbjct: 196 EIV 198 >gi|288819191|ref|YP_003433539.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus TK-6] gi|46849522|dbj|BAD17850.1| putative DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus] gi|288788591|dbj|BAI70338.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus TK-6] gi|308752773|gb|ADO46256.1| DNA polymerase III, epsilon subunit [Hydrogenobacter thermophilus TK-6] Length = 191 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 8/167 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIETTG D ++ IIEI V + T+R F + P G +KL GIT+ Sbjct: 11 VSIDIETTGFDEESSDIIEIACVRVEGCIITDR-FSTLVNP-GYLLPDRIVKLTGITNAM 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + KP+ + F F + + + H+ + D+ FI+ + + I TL++ Sbjct: 69 IVGKPNIYEVLPHFLRFVGD--SIIVGHHVEKDMAFIDKAYRVLYGKKFKHPHIC-TLNL 125 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR P R L L + I +R H AL D+ + ++I+++ Sbjct: 126 ARNILPDLKRYSLKDLADHF--NIRYRRLHRALDDAETTAYLFIELL 170 >gi|307564574|ref|ZP_07627114.1| exonuclease [Prevotella amnii CRIS 21A-A] gi|307346732|gb|EFN92029.1| exonuclease [Prevotella amnii CRIS 21A-A] Length = 287 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGLD NDRII+I +++ K R +F+ P G++ E + L GIT+E Sbjct: 10 IVFDLETTGLDLVNDRIIQISYIKVYPDGKEERE-NIFINP-GKQIPEEVIALTGITNED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127 + P+F E F ++ N+ +FD+ + E R + +++D Sbjct: 68 VAKAPTFKEKGKELSLKFT--GCDFAGFNSNRFDIPMLAEEFLRAGIEFDFSKCQLVDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 SI H R +L + + Y Sbjct: 126 SIF---HKMERRNLAAAYEFY 143 >gi|37526494|ref|NP_929838.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1] gi|54036329|sp|Q7N3W0|RNT_PHOLL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|36785925|emb|CAE14977.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1] Length = 217 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI AV L +D + + + P G P AL+ G Sbjct: 20 VVIDVETGGFNAKTDALLEIAAVTLEMDGEGWLTPGESLHFHIEPFEGANLEPAALEFTG 79 Query: 65 ITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD F+ A +R + Sbjct: 80 IDPLNPLRGAVSEYEALHAIFKMVRKGIKNNHCNRAIIVAHNANFDHSFVMAATERTGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++ + L C GI + H AL D+ ++++ +M Sbjct: 140 RNPFHPFATFDTAALGGLV--LGQTILAKACITAGIPFDNNQAHSALYDTDRTAELFCEM 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|308125815|ref|ZP_05777630.2| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|308111533|gb|EFO49073.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] Length = 247 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 17/186 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL++++D I+ IG V +D + + + + PN R+ + E++ +HGITD Sbjct: 58 VSVDFETTGLNAEDDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITDS 116 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127 +K+ P + I E D + + H + F NA L I + P ++DTL Sbjct: 117 EVKNAPQLTQILGEILDALAGKVV--LVHYKNIERQFFYNALLNTIGEGIQFP--VVDTL 172 Query: 128 ----SIARRKHPSSRNDLNSLCKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGGS 179 ++ RR+ N L K+ G + + H R ++G A H L+D + + Sbjct: 173 DIEYALQRRECSGIWNKLKG--KKPGSVRLGHARERYGLPAYQPHHALTDALATAELFQA 230 Query: 180 QINFGF 185 Q+ + F Sbjct: 231 QLQYHF 236 >gi|313768210|ref|YP_004061890.1| hypothetical protein MpV1_007c [Micromonas sp. RCC1109 virus MpV1] gi|312598906|gb|ADQ90930.1| hypothetical protein MpV1_007c [Micromonas sp. RCC1109 virus MpV1] Length = 443 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 14/120 (11%) Query: 7 MRKIVFDIETTGLDSK-------------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGR 53 M+ I FD ET+GL + R + + A + TF + PN Sbjct: 4 MQYIAFDFETSGLPEGRRPVTPETLHQFDSCRAVSLSAARFSSRGRLVDTFDAIVYPNDF 63 Query: 54 KNSPEALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + S ++ +HGIT + ++ F+ +F +F F + +AHNAKFD + +E+ R Sbjct: 64 QISQGSIDVHGITQQRAEREGRPFTEVFLDFVRFIGPRTTTMVAHNAKFDTSVLRSEMIR 123 >gi|320096178|ref|ZP_08027770.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338] gi|319976891|gb|EFW08642.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338] Length = 210 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 11/180 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + I EIGA+ + + F+ + P+ P K+ GIT + Sbjct: 20 LVVDVETTGLGRACE-ITEIGALRMRGTQVVDE-FEELVRPSA-PIPPFIEKMTGITTDM 76 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +++ F + +AHNA FD+GF+ A R P +DTL Sbjct: 77 VAGADPVQAVYPRFAAWAGAGAPGRVLVAHNADFDMGFL-ARAARACSMPWRTPPSVDTL 135 Query: 128 SIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 S+AR P + + L ++ + + + H AL D+ +V + ++ FG Sbjct: 136 SLARLALPRPVVANHRLGTVARHFRTATA--PGHRALGDARATGEVLCGLAGLAAEAGFG 193 >gi|315612858|ref|ZP_07887769.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sanguinis ATCC 49296] gi|315314968|gb|EFU63009.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sanguinis ATCC 49296] Length = 830 Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 20/180 (11%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKN 55 M+ R +V D+E T SK +II++G V E++D T+ + P+ + Sbjct: 1 MMNARNDRYVVVDLEATSTGSKA-KIIQVGIVVIENGEIIDQYATD------VNPHEPLD 53 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 S +L G+TD+ L P FS + + ++ ++ ++AHN +FD + AE Sbjct: 54 S-HIKELTGLTDQRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEG 109 Query: 116 DPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L R +DT+ +A+ +P + +L LC+ GI + H H AL D+ +++ + M Sbjct: 110 YELRTPR-VDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYM 166 >gi|150025497|ref|YP_001296323.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] gi|149772038|emb|CAL43514.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] Length = 256 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 27/117 (23%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS------------PEA 59 FD+ETTG+D DRI+EI F++F PNG K S + Sbjct: 12 FDLETTGIDIGKDRIVEISV------------FKIF--PNGNKESKTWLVNPTIPIPAQT 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 +HGITDE + ++P+F+ + S+ ++ + + ++ +FD+ + EL R D Sbjct: 58 TAVHGITDEKVANEPTFNELASQVYNMIKDSDLAGF-NSDRFDIPLLAEELLRAGVD 113 >gi|289550764|ref|YP_003471668.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis HKU09-01] gi|289180296|gb|ADC87541.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis HKU09-01] Length = 893 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 8/160 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG D II+IG + + K T+ + + P L I ++ L Sbjct: 8 VVDLETTGNQLDYDEIIQIG-ITFVRGQKIVGTYHSMINTDVEI-PPFIQALTSIEEDML 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K P F + + + +++ ++AHN FD+ FI +R N P ++IDT+ + Sbjct: 66 KQAPYFHEVAEDVYK--QLKDSVFVAHNVSFDLTFIKKAFKR-NHIHFQPKKVIDTVELF 122 Query: 131 RRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 + P+ ++ L+ L + + I + +HR+ A + L+ Sbjct: 123 KIAFPTDKSYQLSELAEAHHIPLDNAHRADEDATTTAKLM 162 >gi|157737501|ref|YP_001490184.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] gi|157699355|gb|ABV67515.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] Length = 247 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 34/186 (18%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD ETTG ++ DR+I+ GA+ ++D F LC EA+++H IT + Sbjct: 5 VLFDTETTGA-AQEDRVIQFGAM-IVDNKGKVEAFDE-LCSAPIPIKLEAMEVHNITPDL 61 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125 L++KP ++ + F+ E N++ IAHN FD L I K+ + S ++ID Sbjct: 62 LENKP--KAVETNFYKRLEELNSDENYLIAHNINFD-------LDMIKKEGFENSYKLID 112 Query: 126 TLSIA----------RRKHPSSRNDLNSL----CKRYGITISHRSKHGALLDSHLLSDVY 171 TL A R ++ DL +YGITI H A+ D L+ ++ Sbjct: 113 TLRCAKHLFSDLPYHRLQYLRYALDLYKFEENEASKYGITI---KAHDAIGDV-LVMKLF 168 Query: 172 IKMMVG 177 + +VG Sbjct: 169 LSKLVG 174 >gi|315637226|ref|ZP_07892446.1| exonuclease [Arcobacter butzleri JV22] gi|315478498|gb|EFU69211.1| exonuclease [Arcobacter butzleri JV22] Length = 247 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 34/186 (18%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD ETTG ++ DR+I+ GA+ ++D F LC EA+++H IT + Sbjct: 5 VLFDTETTGA-AQEDRVIQFGAM-IVDNKGKVEAFDE-LCSAPIPIKLEAMEVHNITPDL 61 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125 L++KP ++ + F+ E N++ IAHN FD L I K+ + S ++ID Sbjct: 62 LENKP--KAVETNFYKRLEELNSDENYLIAHNINFD-------LDMIKKEGFENSYKLID 112 Query: 126 TLSIA----------RRKHPSSRNDLNSL----CKRYGITISHRSKHGALLDSHLLSDVY 171 TL A R ++ DL +YGITI H A+ D L+ ++ Sbjct: 113 TLRCAKHLFSDLPYHRLQYLRYALDLYKFEENEASKYGITI---KAHDAIGDV-LVMKLF 168 Query: 172 IKMMVG 177 + +VG Sbjct: 169 LSKLVG 174 >gi|255022249|ref|ZP_05294243.1| Ribonuclease T [Acidithiobacillus caldus ATCC 51756] gi|254968305|gb|EET25873.1| Ribonuclease T [Acidithiobacillus caldus ATCC 51756] Length = 211 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 28/186 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN---------GRKNSPEAL 60 +V D+E+ G ++ ++EI A+ + T+ Q L P G + P AL Sbjct: 15 VVVDVESAGFEAHRHALLEIAAIVI-----THADGQWQLGPRHHFHVEPFAGAELDPAAL 69 Query: 61 KLHGITDEF------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQ 111 +GI D + L + F +++ E + A + HNA FD+ F++A + Sbjct: 70 AFNGI-DPYQPLRGALPEAEVFGTLYRALRKAVKEAHCRRAVLVGHNAHFDLSFLHAAEK 128 Query: 112 --RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 R+ P P +IDT+S+A + L ++ G+ R H AL D+ ++ Sbjct: 129 RLRLKNSPFHPFSVIDTVSLAALA--LAETVLAKAVQKAGLAWDGREAHSALYDAERTAE 186 Query: 170 VYIKMM 175 ++ ++ Sbjct: 187 LFCWIV 192 >gi|77407162|ref|ZP_00784150.1| exonuclease, putative [Streptococcus agalactiae H36B] gi|77174231|gb|EAO77112.1| exonuclease, putative [Streptococcus agalactiae H36B] Length = 124 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 4/71 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 K R I FDIETTGL+S+ DRI+E+GAV L + K +++ + N + N S + +++ Sbjct: 50 KNRFIAFDIETTGLNSQQDRIVEVGAV-LFENGKVVDSYESLV--NAKVNISADVTRINN 106 Query: 65 ITDEFLKDKPS 75 IT+ +K+ PS Sbjct: 107 ITNRMIKNAPS 117 >gi|313144535|ref|ZP_07806728.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818] gi|313129566|gb|EFR47183.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818] Length = 254 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 13/170 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68 + DIET G ++ IIEIGA+ + + S+ +F+ ++ P +N E L GI E Sbjct: 74 VFVDIETNGAKPQSSEIIEIGALRVKN-SQILESFESYVYAPFVPENITE---LTGIRQE 129 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTL 127 +++ P + F +F ++AHN FD F++ L++ L+P + T+ Sbjct: 130 DIQNAPQSKEVLRAFREFLG--GGVFVAHNVNFDFSFLDYHLRQNGLFGLLNPK--LCTI 185 Query: 128 SIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMM 175 +A++ S R L+ L + GI +SHR+ A L S + ++ I M+ Sbjct: 186 DLAKKTILSKRYALSYLNEFLGINTAMSHRAYADA-LTSFRIFEIAISML 234 >gi|317471044|ref|ZP_07930419.1| exonuclease [Anaerostipes sp. 3_2_56FAA] gi|316901485|gb|EFV23424.1| exonuclease [Anaerostipes sp. 3_2_56FAA] Length = 234 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 13/157 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL + D++IEIGAV++ + K + + P R+ S ++L GIT + Sbjct: 5 VAFDLETTGLSVEEDQVIEIGAVKVKN-GKIAGKYNCIIYPE-REVSDFIIRLTGITRKM 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L F F + + HN FD F+ +R +DTL Sbjct: 63 LDGGIPMREGVEGFLAF--SEGYPVLGHNLMFDYRFMKTAAKRFRYAFEKEG--VDTLRA 118 Query: 130 AR---RKHPSSRNDLNSLCKRYGIT--ISHRSKHGAL 161 AR R S + L+SLC+ Y +HR+ AL Sbjct: 119 ARLLLRGLESKK--LSSLCEHYHYVNQAAHRAYDDAL 153 >gi|297380606|gb|ADI35493.1| DNA polymerase III polC-type [Helicobacter pylori v225d] Length = 287 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 17/214 (7%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GI E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFGFKT 187 R S R L+ L +GI +SHR+ AL L + + + + F Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADALASYKLFEICLLNLPSYIKTTMDLIDFSK 249 Query: 188 NEDRFFK-----EEKKTVPNISLLKRDKPLFTRI 216 + K ++T+P SL +R K L I Sbjct: 250 CANTLIKRPPRARHQETLPPFSLFERTKGLLNII 283 >gi|255532547|ref|YP_003092919.1| DNA polymerase III subunit epsilon [Pedobacter heparinus DSM 2366] gi|255345531|gb|ACU04857.1| DNA polymerase III, epsilon subunit [Pedobacter heparinus DSM 2366] Length = 456 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 7/155 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V DIETTG + + I EI ++ + D + ++ + P G++ L GI+ Sbjct: 1 MLYAVVDIETTGGFASGNGITEI-SILVHDGREVVEAYETLINP-GQEIPAYIETLTGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + P F + +E + +++ ++AHN FD FI L D + + T Sbjct: 59 NEMVVTAPLFGGVAAEIYAMLHDKI--FVAHNVNFDFSFIKHHLSLSGYDL--RCKKLCT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160 + ++R+ P S L LC I I R + G Sbjct: 115 VRLSRKLFPGYSSYSLGKLCNALNIAIHDRHRAGG 149 >gi|229060993|ref|ZP_04198347.1| exonuclease [Bacillus cereus AH603] gi|228718362|gb|EEL69996.1| exonuclease [Bacillus cereus AH603] Length = 221 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 8/102 (7%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N+ + ++ D ETTGL + D+IIEI ++L + L EA +HG Sbjct: 61 NRDQFVILDTETTGLTLR-DQIIEISVIDL-----AGKILLDSLVKPTTNIPAEAASIHG 114 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 IT+E + D PS+++I+ E + + +NA+FD+G I Sbjct: 115 ITNEMVHDAPSWTAIYKELREV--TVGKTLLIYNAEFDLGMI 154 >gi|167747300|ref|ZP_02419427.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662] gi|167653278|gb|EDR97407.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662] Length = 234 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 13/157 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL + D++IEIGAV++ + K + + P R+ S ++L GIT + Sbjct: 5 VAFDLETTGLSVEEDQVIEIGAVKVKN-GKIAGKYNCIIYPE-REVSDFIIRLTGITRKM 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L F F + + HN FD F+ +R +DTL Sbjct: 63 LDGGIPMREGVEGFLAF--SEGYPVLGHNLMFDYRFMKTAAKRFRYAFEKEG--VDTLRA 118 Query: 130 AR---RKHPSSRNDLNSLCKRYGIT--ISHRSKHGAL 161 AR R S + L+SLC+ Y +HR+ AL Sbjct: 119 ARLLLRGLESKK--LSSLCEHYHYVNQAAHRAYDDAL 153 >gi|325297487|ref|YP_004257404.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] gi|324317040|gb|ADY34931.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] Length = 183 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 7/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ET K I E G + ++ + +T + P G + S +++HGI Sbjct: 7 IAIDFETA--TGKRASICEAG-ICVVRNGEVTKTRSWLVRPQGNRYSYWNMQIHGIRPND 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 D P F +++E ++ + +AHNA FDVG I L+ + D + +L Sbjct: 64 TVDSPEFPEVWAEISEYLKDIPI-LVAHNAAFDVGCIRHSLELYGMEKPDITYYC-SLRA 121 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 AR+ + N L+ LC ++ I + H A D+ + + ++++ Sbjct: 122 ARKLYDFGCNSLDYLCDQF--KIPYGRHHRAGDDAEMCARLFLR 163 >gi|261840222|gb|ACX99987.1| DNA polymerase III subunit epsilon [Helicobacter pylori 52] Length = 323 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GI E Sbjct: 113 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYITELTGIAYEDTL 168 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 169 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 225 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 226 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 257 >gi|199597302|ref|ZP_03210733.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus rhamnosus HN001] gi|199591818|gb|EDY99893.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus rhamnosus HN001] Length = 180 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 P+ +++HGIT + ++D+PSF ++ F+ AHNA FDV + L R Sbjct: 47 PQNIRIHGITPDMVQDQPSFDRVWPHIQMFYTPGRI-VTAHNAPFDVSVLRLTLDRYGIA 105 Query: 117 PLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++IDT+ +R+ P N L+++ I + H H AL DS+ + + I Sbjct: 106 -APRYQVIDTVKTSRQFLPKLPNHRLDTVSAALKIPLEHH--HNALADSYACARILI 159 >gi|70726060|ref|YP_252974.1| hypothetical protein SH1059 [Staphylococcus haemolyticus JCSC1435] gi|68446784|dbj|BAE04368.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 219 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 11/156 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ET + K I +G V++++ ++ +F + P S +++HGIT E Sbjct: 42 IALDFETA--NGKRTSICSVGMVKVVN-NEIVESFYTLVNPFDYF-SQTNIEVHGITPED 97 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128 + D PSF +F F ++ +AHNA FD+ ++ L+++N + PS I + Sbjct: 98 VIDAPSFEYVFPYMMQFIDK--LPVVAHNAAFDMNVLHQSLKQLNIE--TPSMIYFCSYQ 153 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +A+R + R L L K Y + H AL D+ Sbjct: 154 LAKRTIDAYRYGLKHLMKHYKLDF--HGHHDALNDA 187 >gi|157961523|ref|YP_001501557.1| exonuclease RNase T and DNA polymerase III [Shewanella pealeana ATCC 700345] gi|157846523|gb|ABV87022.1| Exonuclease RNase T and DNA polymerase III [Shewanella pealeana ATCC 700345] Length = 228 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 19/170 (11%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ + D+E TGL+S+ D+I+ IG + + + + + + + + +G ++ +H Sbjct: 41 SQLPLMAVDLEMTGLNSQFDQILSIGLIPIRNGLLQVSHSKHLLVSIDGSVG--DSAVIH 98 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI D L + S + W Q +AH+A D+ F+ AE+QR + Sbjct: 99 GIVDNQLTQ--AVSPKLAMAWFLEQTQGHVLVAHHAPLDLCFLKAEIQRCYGQTIQFVA- 155 Query: 124 IDTLSIARR---------KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 IDT+++ +R K S R L++ +RYG+ + + H A +D+ Sbjct: 156 IDTMAVEKRRLLMQIDVIKEGSLR--LDACRQRYGLPV--YAAHNAAIDA 201 >gi|104780415|ref|YP_606913.1| ribonuclease T [Pseudomonas entomophila L48] gi|166200016|sp|Q1IE06|RNT_PSEE4 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|95109402|emb|CAK14102.1| ribonuclease T [Pseudomonas entomophila L48] Length = 224 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + +D + T+ + P G AL+ G Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFYRVEPFEGANIEAAALEFTG 91 Query: 65 I-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR--IN 114 I D L+ S S ++ + + + A + HN+ FD+GF+NA + R I Sbjct: 92 IKLDHPLRMAVSEESALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDIK 151 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ I R H A D+ ++++ + Sbjct: 152 RNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCGI 209 Query: 175 M 175 + Sbjct: 210 V 210 >gi|33596994|ref|NP_884637.1| putative exonuclease [Bordetella parapertussis 12822] gi|33566445|emb|CAE37698.1| putative exonuclease [Bordetella parapertussis] Length = 247 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 10/156 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD-E 68 +V D+ETTGL I+E AV + + R F + +GR P +L GIT E Sbjct: 81 VVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGRV-PPFISRLTGITQAE 139 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +D F +F DF + HNA FD F+ A R P + ++ TL Sbjct: 140 VERDGVPVRQAFGDFLDFI--EGGPLFFHNASFDRRFLQAAADRTGL-PFE-AQTHCTLM 195 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163 +AR+ P + LN L + G + H AL D Sbjct: 196 LARQAWPELPSHKLNVLARHLG---ASEPTHRALAD 228 >gi|28898498|ref|NP_798103.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD 2210633] gi|260879545|ref|ZP_05891900.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|260894980|ref|ZP_05903476.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|28806716|dbj|BAC59987.1| putative DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308086038|gb|EFO35733.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308093371|gb|EFO43066.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] Length = 248 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 17/186 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL++++D I+ IG V +D + + + + PN R+ + E++ +HGITD Sbjct: 59 VSVDFETTGLNAEDDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITDS 117 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127 +K+ P + I E D + + H + F NA L I + P ++DTL Sbjct: 118 EVKNAPQLTQILGEILDALAGKVV--LVHYKNIERQFFYNALLNTIGEGIQFP--VVDTL 173 Query: 128 ----SIARRKHPSSRNDLNSLCKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGGS 179 ++ RR+ N L K+ G + + H R ++G A H L+D + + Sbjct: 174 DIEYALQRRECSGIWNKLKG--KKPGSVRLGHARERYGLPAYQPHHALTDALATAELFQA 231 Query: 180 QINFGF 185 Q+ + F Sbjct: 232 QLQYHF 237 >gi|301633239|gb|ADK86793.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma pneumoniae FH] Length = 1443 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 9/165 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 ++FDIETTGL + D +IE +++ + R Q FL +G P A+ ++ IT Sbjct: 409 VIFDIETTGLHGRYDSVIEFAGIKVKHNREVER-MQFFLKIDG--PLPAAVTEITKITQA 465 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127 L+D + + + + +AHN FD+ F+ + ++ N PL + +IDTL Sbjct: 466 QLEDGMEQQAGLEKLRAWLD--GCVMVAHNGLSFDLPFLQTQFEKYNIAPLT-NPLIDTL 522 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +++ +P + + L+++C + H A D+ L V+ Sbjct: 523 ALSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDTQALKKVF 567 >gi|289663085|ref|ZP_06484666.1| ribonuclease T [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 211 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 29/170 (17%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63 +V D+ET G D ++EI V + +D + T L P G + P++L++ Sbjct: 25 PVVVDVETGGFDWNKHALLEIACVPIEMDAAGRFFPGDTASAHLVPAPGLEIDPKSLEIT 84 Query: 64 GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI + F K +K + +F+ + Q A + HNA FD+ F+NA + R+ Sbjct: 85 GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 144 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 ++P P + DT+++A YG T+ R+ A LD Sbjct: 145 KRNPFHPFSVFDTVTLAGVA--------------YGQTVLARAAQAAGLD 180 >gi|58337449|ref|YP_194034.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM] gi|58254766|gb|AAV43003.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM] Length = 927 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 15/176 (8%) Query: 5 NKMRKIVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 NK V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L Sbjct: 6 NKDTFAVVDLETTGTQRENGHHIIQFGCA-IIKNMKVVKTYSFLINPH-REIPQSVVNLT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++E ++ + F + Q+ ++AHN FD+ F+N EL + D L ++ Sbjct: 64 GISNEDVQKQKDFDYYAPKIVSIL--QDTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKA 120 Query: 124 IDTLSIARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDT+ +A+ P+ DL S K I H + H A D++ + + I+++ Sbjct: 121 IDTVELAKIAFPTLPSYKLGDLTSQLK-----IKHLNPHKADSDAYGTAVLLIEII 171 >gi|33600836|ref|NP_888396.1| putative exonuclease [Bordetella bronchiseptica RB50] gi|33568436|emb|CAE32348.1| putative exonuclease [Bordetella bronchiseptica RB50] Length = 247 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 10/156 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD-E 68 +V D+ETTGL I+E AV + + R F + +GR P +L GIT E Sbjct: 81 VVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGRV-PPFISRLTGITQAE 139 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +D F +F DF + HNA FD F+ A R P + ++ TL Sbjct: 140 VERDGVPVRQAFGDFLDFI--EGGPLFFHNASFDRRFLQAAADRTGL-PFE-AQTHCTLM 195 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163 +AR+ P + LN L + G + H AL D Sbjct: 196 LARQAWPELPSHKLNVLARHLG---ASEPTHRALAD 228 >gi|237731384|ref|ZP_04561865.1| ribonuclease T [Citrobacter sp. 30_2] gi|226906923|gb|EEH92841.1| ribonuclease T [Citrobacter sp. 30_2] Length = 215 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD F+ A +R + Sbjct: 80 IDPNNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLS--LGQTVLSKACLAAGMEFDGNQAHSALYDTERTAVLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|72381899|ref|YP_291254.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. NATL2A] gi|72001749|gb|AAZ57551.1| DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. NATL2A] Length = 292 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 10/165 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGLD++ND +E+G++ S++ Q FL P N A K++ I E Sbjct: 69 LILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSFLLPVEINN---AEKINNIPAEI 125 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDTLS 128 + S F N +AHN++FD + +L +I K P S +D ++ Sbjct: 126 TRLPQPLSEAIKYFESLVRVSNV-IVAHNSEFDKKWFGLKKLPQIEK-PWICS--MDDIT 181 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +R + L YG+ + + H AL D L++V+I+ Sbjct: 182 WPADRQLKTRPSVRDLALAYGVPVWN--AHRALTDCIYLAEVFIR 224 >gi|13507773|ref|NP_109722.1| DNA polymerase III PolC [Mycoplasma pneumoniae M129] gi|2494192|sp|P75080|DPO3_MYCPN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|1673778|gb|AAB95768.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129] Length = 1443 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 9/165 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 ++FDIETTGL + D +IE +++ + R Q FL +G P A+ ++ IT Sbjct: 409 VIFDIETTGLHGRYDSVIEFAGIKVKHNREVER-MQFFLKIDG--PLPAAVTEITKITQA 465 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127 L+D + + + + +AHN FD+ F+ + ++ N PL + +IDTL Sbjct: 466 QLEDGMEQQAGLEKLRAWLD--GCVMVAHNGLSFDLPFLQTQFEKYNIAPLT-NPLIDTL 522 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +++ +P + + L+++C + H A D+ L V+ Sbjct: 523 ALSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDTQALKKVF 567 >gi|317182753|dbj|BAJ60537.1| DNA polymerase III subunit epsilon [Helicobacter pylori F57] Length = 287 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GI E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 190 RAILSIRYSLSFLKELLGFGIEVSHRAYADAL 221 >gi|289670069|ref|ZP_06491144.1| ribonuclease T [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 211 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 29/170 (17%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63 +V D+ET G D ++EI V + +D + T L P G + P++L++ Sbjct: 25 PVVVDVETGGFDWNKHALLEIACVPIEMDAAGRFFPGDTASAHLVPAPGLEIDPKSLEIT 84 Query: 64 GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI + F K +K + +F+ + Q A + HNA FD+ F+NA + R+ Sbjct: 85 GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 144 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 ++P P + DT+++A YG T+ R+ A LD Sbjct: 145 KRNPFHPFSVFDTVTLAGVA--------------YGQTVLARAAQAAGLD 180 >gi|91202954|emb|CAJ72593.1| strongly similar DNA polymerase epsilon subunit (3'-5' exonuclease) [Candidatus Kuenenia stuttgartiensis] Length = 204 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET ++K + +G + + + RT + P P + +HGI+ Sbjct: 1 MKCVAIDFETA--NAKRSSVCSLGLAIIEEQTIVKRT-SWLIRPPELYFDPFSTYIHGIS 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++DKP F ++ E + F + + +AHNA FD+ + L + K P P T Sbjct: 58 AKDVEDKPEFYQLWDEIFPFL--EGSYLVAHNASFDMSVLCCILD-VYKIPYPPLNYFCT 114 Query: 127 LSIARRKHP 135 L+IA+R P Sbjct: 115 LAIAKRVWP 123 >gi|118463087|ref|YP_879676.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104] gi|118164374|gb|ABK65271.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104] Length = 329 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L K ++ L P P +HG+T L Sbjct: 19 VIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 +D+P F+ I + + + +AHN FD F+ AE + + P+D ++ T+ + Sbjct: 76 EDQPQFADIAGDVVEVLRGRT--LVAHNVAFDYAFLAAEAELAGIELPVD--TVMCTVEL 131 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L +G+T + H A D+ +L+ V + Sbjct: 132 ARRLDLGIDNLRLETLAAYWGVT--QQRPHDAFDDAMVLTGVLASAL 176 >gi|46402125|ref|YP_006619.1| Gp39 [Klebsiella phage phiKO2] gi|40218269|gb|AAR83055.1| Gp39 [Klebsiella phage phiKO2] Length = 202 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 40/196 (20%) Query: 1 MIRKNKMRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M+ N +R ++ D ETTGL D IIEI + + N L R PE Sbjct: 11 MMMANWLRSDHVIIDTETTGL-MDFDEIIEITIINMRGEILLNS-----LVKPSRPIPPE 64 Query: 59 ALKLHGITDEFLKDKPSFSSIFSE----FWDFFNEQNAEWIAHNAKFDVGF-INAELQRI 113 A K++ IT+E + D P++S +F W + +W+A N+ FD + + L+ Sbjct: 65 ATKINHITNEMVADAPTWSDVFPAVLKIIWKY------KWLAWNSSFDARLMVQSCLKTW 118 Query: 114 NKDPLDPSRIIDTLSIARRKHPSS-------------------RNDLNSLCKRYGITISH 154 D L P RI + +H + R L + R+G++ + Sbjct: 119 FFDDLKPHRITSIIMAIETRHIDAKAVYDQWYGEFDEKRKNFKRQSLATAAARHGVSTA- 177 Query: 155 RSKHGALLDSHLLSDV 170 H AL D ++ V Sbjct: 178 -GAHRALADCLMILGV 192 >gi|157145913|ref|YP_001453232.1| ribonuclease T [Citrobacter koseri ATCC BAA-895] gi|166228562|sp|A8AH33|RNT_CITK8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|157083118|gb|ABV12796.1| hypothetical protein CKO_01664 [Citrobacter koseri ATCC BAA-895] Length = 215 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++E+ A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGTQAHSALYDTERTAVLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|328468890|gb|EGF39850.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329] Length = 248 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 17/186 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL++++D I+ IG V +D + + + + PN R+ + E++ +HGITD Sbjct: 59 VSVDFETTGLNAEDDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITDS 117 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127 +K+ P + I E D + + H + F NA L I + P ++DTL Sbjct: 118 EVKNAPQLTQILGEILDALAGKVV--LVHYKNIERQFFYNALLNTIGEGIQFP--VVDTL 173 Query: 128 ----SIARRKHPSSRNDLNSLCKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGGS 179 ++ RR+ N L K+ G + + H R ++G A H L+D + + Sbjct: 174 DIEYALQRRECSGIWNKLKG--KKPGSVRLGHARERYGLPAYQPHHALTDALATAELFQA 231 Query: 180 QINFGF 185 Q+ + F Sbjct: 232 QLQYHF 237 >gi|326800451|ref|YP_004318270.1| exonuclease RNase T and DNA polymerase III [Sphingobacterium sp. 21] gi|326551215|gb|ADZ79600.1| Exonuclease RNase T and DNA polymerase III [Sphingobacterium sp. 21] Length = 330 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 9/104 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDEF 69 FD+ETTG++ +DRI+EI ++ + D S+ +T ++ N P + LHG+ DE Sbjct: 12 FDLETTGVNVASDRIVEISILKAMPDGSEQVKTMRI----NPEMPIPLSSSLLHGVYDED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQR 112 +KD P+F + E DF ++ + +N+ KFD+ + E R Sbjct: 68 IKDAPTFKQVAQEIADFL--EDTDLAGYNSNKFDIPVLMEEFLR 109 >gi|327537942|gb|EGF24639.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica WH47] Length = 355 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 7/110 (6%) Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 SP +++HGIT ++++P F ++ E + IAHNA FD+G + A L+ + Sbjct: 47 SPANIQIHGITPGMVREEPEFGELWPEIQSTLGDDC--LIAHNASFDLGVLMACLES-HD 103 Query: 116 DPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDS 164 P+ + T +IARR P R L L GI H H AL DS Sbjct: 104 HPVPDMQYSCTRAIARRTWPQQPRFGLKPLSDWLGIRFRH---HDALEDS 150 >gi|261821926|ref|YP_003260032.1| ribonuclease T [Pectobacterium wasabiae WPP163] gi|261605939|gb|ACX88425.1| ribonuclease T [Pectobacterium wasabiae WPP163] Length = 223 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++E+ AV L +D + + + T + P G P AL +G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + IF +Q A +AHNA FD F+ A R + Sbjct: 80 IDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAADRCSLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D++ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|225850393|ref|YP_002730627.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] gi|225646485|gb|ACO04671.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] Length = 206 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 11/178 (6%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 NK+ FD+ETTGLD + D II IGAV++ + T + R E + +H Sbjct: 31 NKITFCSFDLETTGLDVEKDEIISIGAVKIKEMKIDLSTSFYRIVKPERIPEKENILIHS 90 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRI 123 IT +K + +F ++ + I + FD+ ++ Q+ P L+P Sbjct: 91 ITASEMKKGEDIRDVLPKFLEYI--KGTVLIGYFVSFDISMLSKYTQKFYGFPILNPYID 148 Query: 124 IDTLSIARRKHPSS------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + L I ++ + L+ + + I + R +H AL DS + +++ +M Sbjct: 149 VSQLYIKKKVKSYTPYEKIKEKSLDQIAEELNIPV--RKRHNALYDSITTALIFLSLM 204 >gi|187478996|ref|YP_787020.1| exonuclease [Bordetella avium 197N] gi|115423582|emb|CAJ50118.1| putative exonuclease [Bordetella avium 197N] Length = 193 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 68/150 (45%), Gaps = 8/150 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT-DE 68 +V D+ETTGL + I+E AV + + + + NGR S A +L GI+ E Sbjct: 29 VVADLETTGLSAHACEILEFAAVRVDTEGQIASEYSQLVRINGRVPSFIA-RLTGISQQE 87 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D F F DF A HNA FD F+ A R + + + TL Sbjct: 88 VIRDGKPIDEAFRAFCDFVG--TAPVFFHNASFDTRFLRATASRCGQAFDNDTHC--TLL 143 Query: 129 IARRKHPSSRND-LNSLCKRYG-ITISHRS 156 +ARR P R+ L L + G T +HR+ Sbjct: 144 LARRAWPELRSHKLGMLAEHLGAATPTHRA 173 >gi|227904085|ref|ZP_04021890.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796] gi|227868104|gb|EEJ75525.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796] Length = 927 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 15/176 (8%) Query: 5 NKMRKIVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 NK V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L Sbjct: 6 NKDTFAVVDLETTGTQRENGHHIIQFGCA-IIKNMKVVKTYSFLINPH-REIPQSVVNLT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++E ++ + F + Q+ ++AHN FD+ F+N EL + D L ++ Sbjct: 64 GISNEDVQKQKDFDYYAPKIVSIL--QDTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKA 120 Query: 124 IDTLSIARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDT+ +A+ P+ DL S K I H + H A D++ + + I+++ Sbjct: 121 IDTVELAKIAFPTLPSYKLGDLTSQLK-----IKHLNPHKADSDAYGTAVLLIEII 171 >gi|163847184|ref|YP_001635228.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus J-10-fl] gi|222525025|ref|YP_002569496.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl] gi|163668473|gb|ABY34839.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus J-10-fl] gi|222448904|gb|ACM53170.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl] Length = 951 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 15/164 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 + D+ETTGL S D IIE+ AV + +R F+ + P R+ P + +L GI Sbjct: 7 VAIDVETTGLQSGLDEIIEVAAVTFRGHEILDR-FEQLVRP--RQAVPLKITRLTGIDPA 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ I ++ F N + H+ FD+ + A+ + N+ + DT Sbjct: 64 ALAQAPRFNEIGADLARFIG--NRPIVGHSIGFDLTMLRAQGMQFNQP------VYDTFE 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +A P S L++L G I H H AL D+ + + ++ Sbjct: 116 LATLLLPQVSSYKLSALAAHLG--IPHPDAHRALNDAEVTARLF 157 >gi|222152791|ref|YP_002561968.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus uberis 0140J] gi|222113604|emb|CAR41463.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J] Length = 831 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 8/154 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI++ + + V D+E T S II++G V +L + TFQ + P+ S Sbjct: 12 MIKEFEKKYAVIDLEATNAGS-TASIIQVGIV-ILQGGEIRETFQTDVNPH-EPLSEHIK 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GI+DE L P FS + +D + + ++AHN KFD + L + P Sbjct: 69 SLTGISDEQLSKAPDFSQVAKTIYDLIH--DCIFVAHNVKFDANLLAESLFFEGFELRTP 126 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITIS 153 IDT+ +A+ +P+ + +L+ L G+ +S Sbjct: 127 R--IDTVELAQVFYPTFEKYNLSVLSSELGLDLS 158 >gi|322376366|ref|ZP_08050859.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. M334] gi|321282173|gb|EFX59180.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. M334] Length = 816 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 10/166 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D +R + + P+ ++ KL G+TD Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGKIVDR-YTTDVNPHEPLDA-HIKKLTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P FS + + +D +N ++AHN +FD + L + +P +DT+ Sbjct: 64 RRLAQAPDFSQVARKIFDLV--ENGIFVAHNVQFDANLLAENLFFEGYELRNPR--VDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + P + L LC+ GI + H H AL D+ +++ + Sbjct: 120 ELTQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|227496849|ref|ZP_03927115.1| possible DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM 15434] gi|226833644|gb|EEH66027.1| possible DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM 15434] Length = 174 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 9/105 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK---LHGITD 67 V D+ETTGL D I+EIG V RT+ + P + + +HG+ Sbjct: 51 VVDLETTGLSPATDAILEIGLVLTAPDGTPQRTWSTLINPGAGPDGAIEVGPTFIHGLLP 110 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAEL 110 + L PS + D A +AHNA+FDVGF+ L Sbjct: 111 DDLAGAPSLDDVA----DLLVRDLAGRVVVAHNARFDVGFLTQAL 151 >gi|297571327|ref|YP_003697101.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum DSM 20595] gi|296931674|gb|ADH92482.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum DSM 20595] Length = 597 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + EIGAV++ + F + P G +L GIT Sbjct: 48 LVVDVETTGEKPGLHSLTEIGAVKVRGGTVIGE-FGSLVNP-GVPIPAFITRLTGITTGM 105 Query: 70 LKDKPSFSSIFSEFWDFF-NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTL 127 + PS + F +F + + ++AHNA FD+G + + P+R +IDT+ Sbjct: 106 VATAPSLGEVLVSFIEFVGGDPDLIFVAHNAPFDMGQLRGAASALGL--AFPNRKVIDTV 163 Query: 128 SIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++RR K + L++L + TIS H AL D+ DV Sbjct: 164 KLSRRVFMKDEVPNHKLSTLARFVNATIS--PSHRALDDARATVDV 207 >gi|226952584|ref|ZP_03823048.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse activity) [Acinetobacter sp. ATCC 27244] gi|294649880|ref|ZP_06727280.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194] gi|226836664|gb|EEH69047.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse activity) [Acinetobacter sp. ATCC 27244] gi|292824254|gb|EFF83057.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194] Length = 220 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 24/186 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G + + D ++EI + ++ Y + + +FQ + P G +L Sbjct: 24 VVVDVETAGFNCQTDALLEIACIPIV-YDEHGQFVPGPSFQAHINPFEGANLDRRSLDFI 82 Query: 64 GITDEF--------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR 112 GI D F ++ + IF + Q+ A + HNA FD+GF+ A + R Sbjct: 83 GI-DPFNPMRVAMAEDERSALRRIFKSLNEIRKAQHCTHAVLVGHNAHFDLGFLQAAIAR 141 Query: 113 I---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 N++P + DT++++ + L C + GI + H AL D+ ++ Sbjct: 142 SGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLARACIQAGIEFDGKEAHSALYDTQKTAE 199 Query: 170 VYIKMM 175 ++ ++ Sbjct: 200 LFCYIL 205 >gi|255326994|ref|ZP_05368070.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296] gi|255296211|gb|EET75552.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296] Length = 228 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 11/169 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG+D RI+ + LLD +L G + A +HGIT E Sbjct: 5 RATFDLETTGVDVTTARIVTASLI-LLDPQGNVVRRGEWLADPGVEIPAGAAAVHGITTE 63 Query: 69 FLKD--KPSFSSIF--SEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPSR 122 + ++ +P+ ++ + N IA NA +D ++ E+ R I L P Sbjct: 64 YAREHGRPAREVVWELAGAIGALNLDGVPIIAFNAAYDFSVLHHEMLRHNIANGELPPGV 123 Query: 123 IIDTLSIARRKHPSSRN--DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 ++D + + P R L L YG+++ +H S AL LL Sbjct: 124 VLDPYVLHKHVIPRKRGKRTLEVLATEYGVSLENAHTSADDALAAERLL 172 >gi|210135714|ref|YP_002302153.1| DNA polymerase III subunit epsilon [Helicobacter pylori P12] gi|210133682|gb|ACJ08673.1| DNA polymerase III epsilon subunit [Helicobacter pylori P12] Length = 323 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GI E Sbjct: 113 DLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 168 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 169 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 225 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 226 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 257 >gi|93007423|ref|YP_579187.1| DNA polymerase III [Streptomyces phage mu1/6] gi|90568501|gb|ABD94180.1| DNA polymerase III [Streptomyces phage mu1/6] Length = 238 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 25/163 (15%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGIT 66 R FD ETTG+D ++DRI+ AV L+ + T P + PEA +HG+T Sbjct: 7 RLCAFDTETTGVDVESDRIV-TAAVLLVGGGQPTETHTWLADPG--IDIPEAASAVHGVT 63 Query: 67 DEFLK--DKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR--------- 112 E + +P+ + SE +Q +A NA+FDV ++ EL R Sbjct: 64 SERARAEGRPA-PMVVSEVAALLADQIVTGVPVVAMNARFDVTILDRELARHGLPSLAEQ 122 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRND--LNSLCKRYGITIS 153 +PL ++D L + +R R L L + YG+ + Sbjct: 123 AGAEPL----VLDPLVMDKRAEKYRRGGRKLVDLARHYGVQLG 161 >gi|32477333|ref|NP_870327.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica SH 1] gi|32447884|emb|CAD77402.1| probable DNA polymerase III polC-type [Rhodopirellula baltica SH 1] Length = 355 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 7/110 (6%) Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 SP +++HGIT ++++P F ++ E + IAHNA FD+G + A L+ + Sbjct: 47 SPANIQIHGITPGMVREEPEFGELWPEIQSTLGDDC--LIAHNASFDLGVLMACLES-HD 103 Query: 116 DPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDS 164 P+ + T +IARR P R L L GI H H AL DS Sbjct: 104 HPVPDMQYSCTRAIARRTWPQQPRFGLKPLSDWLGIRFRH---HDALEDS 150 >gi|297808725|ref|XP_002872246.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp. lyrata] gi|297318083|gb|EFH48505.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp. lyrata] Length = 316 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 21/182 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68 IV D+ETTGL+ K +RIIEI A +L + TFQ + P + P +HGI + Sbjct: 112 IVSDLETTGLNRKRERIIEIAAQDLAGGGYS--TFQTLVNPG---DVPVTNTDIHGIRTD 166 Query: 69 FL--KDKPSFSSIFSEFWDFFNEQN-----AEWIAHNAK-FDVGFINAELQRINKDPLDP 120 + + P + F + + +AHN K FD F+ E R + + Sbjct: 167 MVCRPEVPRMEELIPIFLQYVESRQKPGGYVMLVAHNGKSFDFRFLINEFNRCSYEIPHN 226 Query: 121 SRIIDTLSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++D+L + R S + L L + Y +T H AL D LLS V+ K+ Sbjct: 227 WLLLDSLPLGREHMKSLDPTGKPKASLKVLQEHYSLT-REGDAHRALSDVLLLSKVFQKL 285 Query: 175 MV 176 + Sbjct: 286 TI 287 >gi|77361037|ref|YP_340612.1| ribonuclease T [Pseudoalteromonas haloplanktis TAC125] gi|76875948|emb|CAI87170.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Pseudoalteromonas haloplanktis TAC125] Length = 232 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 21/183 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCPNGRKNSPEA-LKLH 63 +V D+ET G + D ++EI AV +L + T + P N +A ++ + Sbjct: 19 VVIDVETGGFNKDTDALLEI-AVSVLKMDDEGLLSIDHTVHFHVEPFADANIEQAAIEFN 77 Query: 64 GITDEF--LKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQR-- 112 GI D F L+ E + Q + +AHNA FD GF+NA ++R Sbjct: 78 GI-DPFSALRGAVPEEHAIKEICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERNN 136 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P P DT S+A + L C+ GI + H AL D+ +++Y Sbjct: 137 IKRTPFHPFVSFDTTSLAGLA--LGQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYC 194 Query: 173 KMM 175 ++ Sbjct: 195 LIV 197 >gi|325917515|ref|ZP_08179720.1| RNAse T [Xanthomonas vesicatoria ATCC 35937] gi|325536273|gb|EGD08064.1| RNAse T [Xanthomonas vesicatoria ATCC 35937] Length = 213 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 29/170 (17%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63 +V D+ET G D ++EI V + +D T L P G + P++L++ Sbjct: 27 PVVVDVETGGFDWNKHALLEIACVPIEMDADGRFFPGETASAHLVPAPGLEIDPKSLEIT 86 Query: 64 GITDE----FLK-DKPSFSSIFSEFWDF---FNEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI + F K +K + +F+ + Q A + HNA FD+ F+NA + R+ Sbjct: 87 GIVLDHPFRFAKQEKDALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGH 146 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 ++P P + DT+++A YG T+ R+ A LD Sbjct: 147 KRNPFHPFSVFDTVTLAGVA--------------YGQTVLARAAQAAGLD 182 >gi|262047863|ref|ZP_06020812.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] gi|312976690|ref|ZP_07788439.1| DNA polymerase III [Lactobacillus crispatus CTV-05] gi|260571856|gb|EEX28428.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] gi|310896018|gb|EFQ45083.1| DNA polymerase III [Lactobacillus crispatus CTV-05] Length = 318 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 11/158 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITDE 68 + DIETTGL DRI E+G V++ + ++ L + NS A KL+GIT+E Sbjct: 35 MLDIETTGLYPYRDRITELGGVKVRNGQIVDQYTN--LVKFSKNNSVPAFITKLNGITEE 92 Query: 69 FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + K+ EF +F + I +N FD+ F+ Q+ LD + +D L Sbjct: 93 QIGKEGIPAEQAIREFREFIGDD--VIIGYNVNFDLNFLYDLSQKYGLPVLD-NDYVDVL 149 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P R N L +R G I+ H L DS Sbjct: 150 RLARTYYPRERHNRLLDCMQRAG--IAQVEAHHGLQDS 185 >gi|254383630|ref|ZP_04998980.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] gi|194342525|gb|EDX23491.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] Length = 241 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 21/166 (12%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M R + FD ETTG+D + DRI+ + R+ + + P G P A Sbjct: 1 MTRWYEGPLAAFDTETTGVDVEQDRIVSAALIVQECAGGRVRSTRWLVNP-GIPVPPGAT 59 Query: 61 KLHGITDEFLKDKPSF-SSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR---- 112 ++HG+TD+ L+ + + + E EQ + NA FD+ ++ EL+R Sbjct: 60 EVHGLTDDHLQRNGRWPAPVVEEIARALGEQLVAGRPVVVMNAPFDLTLLDRELRRHRAS 119 Query: 113 -----INKDP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150 ++ P LDP R++D RK R L LC YGI Sbjct: 120 SLARYLDNRPLTVLDP-RVLDKHLDRYRK---GRRTLTDLCAHYGI 161 >gi|227877650|ref|ZP_03995697.1| DNA polymerase [Lactobacillus crispatus JV-V01] gi|256850746|ref|ZP_05556169.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|227862746|gb|EEJ70218.1| DNA polymerase [Lactobacillus crispatus JV-V01] gi|256712459|gb|EEU27457.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] Length = 318 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 11/158 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITD- 67 + DIETTGL DRI E+G V++ + ++ L + NS A KL+GIT+ Sbjct: 35 MLDIETTGLYPYRDRITELGGVKVRNGQIVDQYTN--LVKFSKNNSVPAFITKLNGITEA 92 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +K+ EF +F + I +N FD+ F+ Q+ LD + +D L Sbjct: 93 QIVKEGIPAEQAIREFREFIGDD--VIIGYNVNFDLNFLYDLSQKYGLPVLD-NDYVDVL 149 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P R N L +R G I+ H L DS Sbjct: 150 RLARTYYPRERHNRLLDCMQRAG--IAQVEAHHGLQDS 185 >gi|255037648|ref|YP_003088269.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM 18053] gi|254950404|gb|ACT95104.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM 18053] Length = 269 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 8/127 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSP-EALKLHGITDEF 69 FD+ETTG++ DRI+EI V+ L +T RT ++ N P E+ +HGI DE Sbjct: 13 FDLETTGVNIVRDRIVEISVVKALVNGETEIRTRRI----NPEMPIPLESSLIHGIYDED 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 +KD P+F S+ F + N +FD+ + E R+ D + R++D Sbjct: 69 VKDAPTFKSVAKNLASFLEGCDLAGFNSN-RFDIPMLVEEFLRVGVDFDVKNRRMVDVQR 127 Query: 129 IARRKHP 135 I P Sbjct: 128 IYHMMEP 134 >gi|313206047|ref|YP_004045224.1| exonuclease rnase t and DNA polymerase iii [Riemerella anatipestifer DSM 15868] gi|312445363|gb|ADQ81718.1| Exonuclease RNase T and DNA polymerase III [Riemerella anatipestifer DSM 15868] Length = 254 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 8/128 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 +FD+ETTG + DRI+EI +++ D S+ +T+ V N + P A +HGI+DE Sbjct: 11 IFDLETTGTNISKDRIVEICILKVNTDASRETKTWLV----NPEMHIPAFATAVHGISDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127 +KD P+ I + + + + N +FDV + E+ R D L +++D Sbjct: 67 DVKDAPTLKEIAPKIMEMISGADLGGFNSN-RFDVPLLAEEMLRAGVDFDLSKMKLVDAQ 125 Query: 128 SIARRKHP 135 I + P Sbjct: 126 VIFHKMEP 133 >gi|224438091|ref|ZP_03659030.1| DNA polymerase III subunit epsilon [Helicobacter cinaedi CCUG 18818] Length = 233 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 13/170 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68 + DIET G ++ IIEIGA+ + + S+ +F+ ++ P +N E L GI E Sbjct: 53 VFVDIETNGAKPQSSEIIEIGALRVKN-SQILESFESYVYAPFVPENITE---LTGIRQE 108 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIIDTL 127 +++ P + F +F ++AHN FD F++ L++ L+P + T+ Sbjct: 109 DIQNAPQSKEVLRAFREFLG--GGVFVAHNVNFDFSFLDYHLRQNGLFGLLNPK--LCTI 164 Query: 128 SIARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMM 175 +A++ S R L+ L + GI +SHR+ A L S + ++ I M+ Sbjct: 165 DLAKKTILSKRYALSYLNEFLGINTAMSHRAYADA-LTSFRIFEIAISML 213 >gi|182439793|ref|YP_001827512.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780457|ref|ZP_08239722.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf. griseus XylebKG-1] gi|178468309|dbj|BAG22829.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660790|gb|EGE45636.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf. griseus XylebKG-1] Length = 241 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 13/154 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ A+ D + +L G P A ++HG+TD+ L Sbjct: 11 AFDTETTGVDVEQDRIVS-AALVAQDTAGGRVRVTRWLVNPGVPVPPGATEVHGLTDDHL 69 Query: 71 KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLD------P 120 + + + + E E A + NA FD+ ++ EL+R L P Sbjct: 70 QRNGRWPAPVMDEIARALAESCATGRPLVVMNAPFDLTLLDRELKRHRASSLARYLDGVP 129 Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 R++D + + ++ R L LC Y + + Sbjct: 130 MRVVDPRVLDKHLDRYRKGRRTLTDLCASYEVVL 163 >gi|50084341|ref|YP_045851.1| ribonuclease T [Acinetobacter sp. ADP1] gi|49530317|emb|CAG68029.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter sp. ADP1] Length = 221 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/186 (22%), Positives = 84/186 (45%), Gaps = 24/186 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI + ++ Y++ ++ + P G +L Sbjct: 25 VVVDVETAGFNAQTDALLEIACIPIV-YNEQGLFVPGESYHAHINPFEGANLDRRSLDFI 83 Query: 64 GITDEF--------LKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR 112 GI D F ++ + IF + +Q +A + HNA FD+GF+ A + R Sbjct: 84 GI-DPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGFLQAAIAR 142 Query: 113 I---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 N++P + DT++++ + L C + GI + H AL D+ ++ Sbjct: 143 TSTKNQNPFHSFSVFDTVTLSAVMF--GQTVLAKACIQAGIDFDGKEAHSALYDTQKTAE 200 Query: 170 VYIKMM 175 ++ ++ Sbjct: 201 LFCYIL 206 >gi|193076779|gb|ABO11496.2| ribonuclease T [Acinetobacter baumannii ATCC 17978] Length = 220 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 22/185 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI + ++ ++ F + P G +L G Sbjct: 24 VVVDVETAGFNAQTDALLEIACIPIVYNAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRI 113 I D F ++ + IF + +Q +A + HNA FD+GF+ A + R Sbjct: 84 I-DPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQAAIARS 142 Query: 114 ---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 N++P ++DT++++ + L C + GI + H AL D+ +++ Sbjct: 143 GTKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDTQKTAEL 200 Query: 171 YIKMM 175 + ++ Sbjct: 201 FCYIL 205 >gi|163782848|ref|ZP_02177844.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159881969|gb|EDP75477.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 194 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 + D+ETTG D + II+IGAV ++ TF + P P+ +K L GIT+ Sbjct: 11 VAIDVETTGFDVNHAEIIDIGAVR-VEGGIITETFSSLVDPG--FFIPDRIKELTGITNA 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F DF ++ + H+ D+ FI+ + R+ + I TL Sbjct: 68 MLVGSPKMIEVLPRFMDFIG--DSIIVGHHISQDIKFID-KYTRLYGEGKFRRPYICTLE 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R+ PS R+ L + + ++ + H AL D+ + + V+++++ Sbjct: 125 LSRKLLPSLPRHSLKEMADYF--SVDYSRLHRALDDALITAQVFLELL 170 >gi|288923046|ref|ZP_06417199.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f] gi|288345596|gb|EFC79972.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EUN1f] Length = 296 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 5/102 (4%) Query: 14 IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDK 73 +ETTGL DR++ + V + L P P + +HG+T E L Sbjct: 1 METTGLWPARDRVLSVAVVLTAPDGAVQGRWSTLLDPG---CDPGPVHIHGLTRERLAGS 57 Query: 74 PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+F+++ E + + +AHNA FD + E RI + Sbjct: 58 PTFAAVVDELSELLAGRV--LVAHNAAFDWRMLAGEALRIGR 97 >gi|256844192|ref|ZP_05549679.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|256614097|gb|EEU19299.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] Length = 318 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 11/158 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITD- 67 + DIETTGL DRI E+G V++ + ++ L + NS A KL+GIT+ Sbjct: 35 MLDIETTGLYPYRDRITELGGVKVRNGQIVDQYTN--LVKFSKNNSVPAFITKLNGITEA 92 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +K+ EF +F + I +N FD+ F+ Q+ LD + +D L Sbjct: 93 QIVKEGIPAEQAIREFREFIGDD--VIIGYNVNFDLNFLYDLSQKYGLPVLD-NDYVDVL 149 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P R N L +R G I+ H L DS Sbjct: 150 RLARTYYPRERHNRLLDCMQRAG--IAQVEAHHGLQDS 185 >gi|237801479|ref|ZP_04589940.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] gi|330873519|gb|EGH07668.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331024338|gb|EGI04395.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] Length = 203 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 3 RVAVIDFETTGISPNPGCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF + +AHNA FD F + EL RI + Sbjct: 60 SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ +ARR P + N Y + H A+ D+ + +++ Sbjct: 116 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 160 >gi|153836296|ref|ZP_01988963.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810] gi|149750571|gb|EDM61316.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus AQ3810] Length = 247 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 17/186 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+++ D I+ IG V +D + + + + PN R+ + E++ +HGITD Sbjct: 58 VSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITDS 116 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127 +K+ P + I E D + + H + F NA L I + P ++DTL Sbjct: 117 EVKNAPQLTQILGEILDALAGKVV--LVHYKNIERQFFYNALLNTIGEGIQFP--VVDTL 172 Query: 128 ----SIARRKHPSSRNDLNSLCKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGGS 179 ++ RR+ N L K+ G + + H R ++G A H L+D + + Sbjct: 173 DIEYALQRRECSGIWNKLKG--KKPGSVRLGHARERYGLPAYQPHHALTDALATAELFQA 230 Query: 180 QINFGF 185 Q+ + F Sbjct: 231 QLQYHF 236 >gi|51849608|dbj|BAD42331.1| DNA helicase RecG [Nannochloris bacillaris] Length = 1341 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 16/134 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL + D +EI A L + RTF + +G S +A ++ GIT Sbjct: 137 IVFDLETTGLSKEKDHPVEIAAEAPL----SGRTFSTLIRLADGMSISTKAEEVTGITTA 192 Query: 69 FLKDK--PSFSSIFSEFWDFFNEQNAE--------WIAHN-AKFDVGFINAELQRINKDP 117 KD P+F ++ F F + + + HN +FD+ + +R + Sbjct: 193 QCKDPSLPTFPQAYASFLRFIEAEMEDAAPGAFPLLVGHNIERFDLPLLLHCAKRFDVAA 252 Query: 118 LDPSRIIDTLSIAR 131 +RI+DTLS +R Sbjct: 253 PLSARILDTLSASR 266 >gi|38234148|ref|NP_939915.1| putative DNA polymerase III epsilon subunit [Corynebacterium diphtheriae NCTC 13129] gi|38200410|emb|CAE50098.1| Putative DNA polymerase III epsilon subunit [Corynebacterium diphtheriae] Length = 448 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 13/169 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEA-LKLHGITD 67 + D+ETT D + I +IGA ++ D T + P G NS EA + +HGIT Sbjct: 106 VAVDVETTNSDWGS--ICQIGAAKVRD-GHVVETKEWLCTPPGDLNSFDEANIAIHGITA 162 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126 + + PSF+ + +F DF + AHNA+FD+ F+ A + L + + Sbjct: 163 DMVATAPSFAECYDQFADFAGDL--PLAAHNAQFDMTAFLRATQAADIR--LRTTNFGCS 218 Query: 127 LSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L+ AR H P + + L ++ + + + R+ H A D+ + + I + Sbjct: 219 LAAARAAHLPIANHKLPTVSQHLHVEL--RNHHNACADAEACAGILIAL 265 >gi|239638049|ref|ZP_04679008.1| exonuclease [Staphylococcus warneri L37603] gi|239596332|gb|EEQ78870.1| exonuclease [Staphylococcus warneri L37603] Length = 184 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 9/155 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + K I +G V+++D ++ TF + PN S + + +HGI E Sbjct: 7 VALDFETA--NGKRTSICSVGMVKVID-NQITETFHTLVNPNDYF-SEQNINVHGIYPED 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+FS +F F ++ +AHNA FD+ ++ +Q I + + + + Sbjct: 63 VASSPNFSYVFPYMMQFIDQ--LPVVAHNAAFDMNVLHQSIQDIGLETPHLTYFC-SYQL 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A+R S R L + Y + H AL D+ Sbjct: 120 AKRTVQSHRYGLKHMMDFYQLDF--HGHHDALNDA 152 >gi|254780064|ref|YP_003058171.1| DNA polymerase III subunit epsilon [Helicobacter pylori B38] gi|254001977|emb|CAX30236.1| DNA polymerase III epsilon subunit [Helicobacter pylori B38] Length = 287 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GI E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221 >gi|213966786|ref|ZP_03394937.1| exonuclease [Pseudomonas syringae pv. tomato T1] gi|301383295|ref|ZP_07231713.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13] gi|302062466|ref|ZP_07254007.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40] gi|302133448|ref|ZP_07259438.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928636|gb|EEB62180.1| exonuclease [Pseudomonas syringae pv. tomato T1] Length = 204 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 4 RVAVIDFETTGISPNPGCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF + +AHNA FD F + EL RI + Sbjct: 61 SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ +ARR P + N Y + H A+ D+ + +++ Sbjct: 117 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 161 >gi|311746871|ref|ZP_07720656.1| exonuclease [Algoriphagus sp. PR1] gi|126578557|gb|EAZ82721.1| exonuclease [Algoriphagus sp. PR1] Length = 267 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 12/164 (7%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+E TG + DRI+EI V+L +D + T +V G EA +HG+ D+ L Sbjct: 12 FDLEATGTNISTDRIVEISIVKLKIDGGQEIYTRRV---NPGVPIPLEASLIHGLYDKDL 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 KD+PSF I E + F + + K+D+ + E R + LD ++D I Sbjct: 69 KDEPSFKDIAKEVYQFIGGSDLSGF-NVLKYDIPLLVEEFLRAGIEFELDKRNLLDAQKI 127 Query: 130 ARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYI 172 H + +L + K Y G T+ + H A D+ DV+I Sbjct: 128 F---HMMEKRNLTAAYKFYCGKTLEN--AHSAEADTLATMDVFI 166 >gi|21672469|ref|NP_660536.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009131|sp|Q8K9V5|RNT_BUCAP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|21623085|gb|AAM67747.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 219 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 24/194 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET G + K D ++EI + L L + + P G + +A+ + Sbjct: 20 VVIDIETAGFNPKTDAVLEIALITLKMDKLGWLHKEDILHFHIKPFKGSIINSDAIAFNK 79 Query: 65 ITDEF------LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--I 113 I D F + + + SI + Q +AHNA FD F+ A +QR I Sbjct: 80 I-DPFNPLRGAISETLAIESILEKVNYGIKIQGCTRGIVVAHNAHFDHNFLMAAIQRVKI 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P P DT +++ + L CK G++ + H AL DS ++++ K Sbjct: 139 KNNPFHPFVTFDTAALSGLA--VGQTVLAKACKAIGLSFDNNQAHSALYDSLQTANLFCK 196 Query: 174 MM-----VGGSQIN 182 ++ +GG IN Sbjct: 197 IVNRWKGLGGWPIN 210 >gi|188528322|ref|YP_001911009.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470] gi|188144562|gb|ACD48979.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470] gi|308064307|gb|ADO06194.1| DNA polymerase III subunit epsilon [Helicobacter pylori Sat464] Length = 287 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GI E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYITELTGIAYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221 >gi|269467908|gb|EEZ79647.1| DNA polymerase III, epsilon subunit [uncultured SUP05 cluster bacterium] Length = 196 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 20/181 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCP-NGRKNSPEALKL 62 +V DIET G + K D ++EI A+ + + Y K +R F + P G P ALK Sbjct: 13 VVVDIETGGFNDKTDAMLEICAIIIGIDDKGVYYPKDSRHFHI--EPFKGANLDPSALKF 70 Query: 63 HGI--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN 114 +GI + F + +K + IF E+ A + HNA FD+GF+ A R Sbjct: 71 NGIDVNNPFRMAVSEKEALGEIFKTARAEMKEEECTRAILVGHNAFFDLGFLYAASNRSK 130 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 K+P IDT+S++ + + L + I H AL D+ ++++ K Sbjct: 131 LKNPFHQFSTIDTVSLSALYYGETV--LAKAMRVANIEWDDAKAHSALYDTKKTAELFCK 188 Query: 174 M 174 + Sbjct: 189 I 189 >gi|306825581|ref|ZP_07458920.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431942|gb|EFM34919.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 830 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 10/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ R +V D+E T SK +II++G V + + N+ + + P+ +S Sbjct: 1 MMNARNDRYVVVDLEATSTGSKA-KIIQVGIVVIENGEIINQ-YATDVNPHEPLDS-HIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD L P FS + + ++ ++ ++AHN +FD + AE L Sbjct: 58 ELTGLTDRRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEGYELRT 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R +DT+ +A+ +P + +L LC+ GI + H H AL D+ +++ + M Sbjct: 115 PR-VDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYM 166 >gi|257452752|ref|ZP_05618051.1| exonuclease [Fusobacterium sp. 3_1_5R] gi|317059293|ref|ZP_07923778.1| exonuclease [Fusobacterium sp. 3_1_5R] gi|313684969|gb|EFS21804.1| exonuclease [Fusobacterium sp. 3_1_5R] Length = 186 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 23/184 (12%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65 M+ + D ETTGL ++ II++ A+ +D + T ++ P + S EAL + Sbjct: 1 MKILYLDTETTGLTYRS-TIIQLAAIVEID-GEIKETINLYCAPFPDSDISEEALSITKF 58 Query: 66 TDE--FLKDKP-----SFSSIFSEFWDFFNEQNA-EWIAHNAKFDVGFINAELQRIN--- 114 T E F D P +F+ I ++ D +N+ + I HN KFD+ + R N Sbjct: 59 TREEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERF 118 Query: 115 -------KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 K+ D L I R + N L +LC+ + I + + H AL D+ Sbjct: 119 IASYIDFKNEFDTLAFTKCLKILGRLPQTENNKLETLCQAFQIPL--ENAHNALADTIAA 176 Query: 168 SDVY 171 D+Y Sbjct: 177 KDLY 180 >gi|320533426|ref|ZP_08034111.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337] gi|320134363|gb|EFW26626.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337] Length = 259 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 14/149 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEF 69 V D+ETTGL D I+E+ V + R++ + P G P +HG+ E Sbjct: 44 VVDLETTGLSPATDSILEVALVVTDAAGRVERSWSTLVDPGAGVDVGPT--HIHGLVAEE 101 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLS 128 L P + + +AHNA+FDVGF+ L + LD +R+ + Sbjct: 102 LIGAPGLDDVADLL--VADLAGRAVVAHNARFDVGFLTQALG--TRGLLDRGARVPRVCT 157 Query: 129 IARRKH----PSSRNDLNSLCKRYGITIS 153 + +H PS R L + C+ G+ I Sbjct: 158 MEWARHFMTTPSRR--LTTCCEVAGVEIG 184 >gi|331018941|gb|EGH98997.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 204 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 4 RVAVIDFETTGISPNPGCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF + +AHNA FD F + EL RI + Sbjct: 61 SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ +ARR P + N Y + H A+ D+ + +++ Sbjct: 117 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 161 >gi|239631428|ref|ZP_04674459.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525893|gb|EEQ64894.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 931 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 17/160 (10%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTG K+ DR+I+ G L+ + K +T + P+ ++ P A+ +L G+ Sbjct: 12 VVDLETTGTSVKDGDRMIQFGCA-LMQHGKIIQTISQLVNPD--RSVPVAIQRLTGLDPN 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F I + ++AHN FD F+NAE +R+ L + IDT+ Sbjct: 69 RLVAAPYFEEIAKTLHQLLTD--TVFVAHNVNFDYPFLNAEFERVGLPKLQLA-AIDTVE 125 Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDS 164 +A+ P + DL S + I H + H A D+ Sbjct: 126 LAQILLPEISSFRLPDLTSY-----LQIEHDNPHQADSDA 160 >gi|322835471|ref|YP_004215497.1| exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602] gi|321170672|gb|ADW76370.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602] Length = 220 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V++ D K + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGLQGG---VVEVASVDIED-GKIVNPMSDLVRPD-RPISHQAMAIHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + + ++AHNA FD QR+ D P I T+ ++ Sbjct: 59 ADKPWIEEIIPRY-----HGSQYYVAHNASFD--------QRMLPD--MPGDWICTVKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 RR P + +L K + ++ + H AL D ++ + + I++M Sbjct: 104 RRLWPGIKYSNMALYKSLKLDVATPADLHHHRALFDCYITAALLIRIM 151 >gi|114707008|ref|ZP_01439907.1| exodeoxyribonuclease X [Fulvimarina pelagi HTCC2506] gi|114537558|gb|EAU40683.1| exodeoxyribonuclease X [Fulvimarina pelagi HTCC2506] Length = 266 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 65/158 (41%), Gaps = 21/158 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ET GL + D +IEIG+V+L L Q F P G S A ++H ITDE Sbjct: 25 VIDTETAGLRLEEDAVIEIGSVDLDLVTGAIFNPMQTFCDPGGAVISDGARRVHQITDEM 84 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P FS F N E + A A FD + R + T Sbjct: 85 LVGAPPFSDAVKPF-------NTETYAAQRADFDRSRLRLT-----------GRWLCTHK 126 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSH 165 +A R P+ R + L SL K + +S + A L H Sbjct: 127 LALRAFPNVRAHGLQSLVKYVPLDLSSVDQMLAGLHPH 164 >gi|293365088|ref|ZP_06611805.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus oralis ATCC 35037] gi|291316538|gb|EFE56974.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus oralis ATCC 35037] Length = 830 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 20/180 (11%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKN 55 M+ R +V D+E T SK +II++G V E++D T+ + P+ + Sbjct: 1 MMNARNDRYVVVDLEATSTGSKA-KIIQVGIVVIENGEIIDQYATD------VNPHEPLD 53 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 S +L G+TD+ L P FS + + ++ ++ ++AHN +FD + AE Sbjct: 54 S-HIKELTGLTDQRLAVAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEG 109 Query: 116 DPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L R +DT+ +A+ +P + +L LC+ GI + H H AL D+ +++ + M Sbjct: 110 YELRTPR-VDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYM 166 >gi|260901010|ref|ZP_05909405.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|308110780|gb|EFO48320.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] Length = 248 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 17/186 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+++ D I+ IG V +D + + + + PN R+ + E++ +HGITD Sbjct: 59 VSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWIVNPN-RELNEESVVIHGITDS 117 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127 +K+ P + I E D + + H + F NA L I + P ++DTL Sbjct: 118 EVKNAPQLTQILGEILDALAGKVV--LVHYKNIERQFFYNALLNTIGEGIQFP--VVDTL 173 Query: 128 ----SIARRKHPSSRNDLNSLCKRYG-ITISH-RSKHG--ALLDSHLLSDVYIKMMVGGS 179 ++ RR+ N L K+ G + + H R ++G A H L+D + + Sbjct: 174 DIEYALQRRECSGIWNKLKG--KKPGSVRLGHARERYGLPAYQPHHALTDALATAELFQA 231 Query: 180 QINFGF 185 Q+ + F Sbjct: 232 QLQYHF 237 >gi|255522480|ref|ZP_05389717.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes FSL J1-175] Length = 807 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R IV D+ETTG S+ DRII+ A ++ K T+ FL P K P ++ L GI Sbjct: 5 RYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNP--EKPIPAFIQELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +K+ P F + + ++ ++AHN FD F+ E+ R L + +D Sbjct: 62 SPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLD 118 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +AR +P L L + + H H A D+ + +D Sbjct: 119 TVELARIMYPGIDSYKLQDLSDEF--NLGHDKPHRADSDAEVTAD 161 >gi|119944051|ref|YP_941731.1| exonuclease, RNase T and DNA polymerase III [Psychromonas ingrahamii 37] gi|119862655|gb|ABM02132.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas ingrahamii 37] Length = 228 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 13/161 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIE TGLD K D+++ IG + +++ +K F + + ++ +HG+ D+ Sbjct: 44 LALDIEMTGLDPKKDQMVSIGIIPIIN-AKIQPEFAQHKLIKIQGSVGQSAVIHGVLDKD 102 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L D W F ++ +AH+A+ D+ F+ L + IDTL I Sbjct: 103 LADALPLEEALQ--WLFEQCKDKVLVAHHAQLDLQFLQQSLSKSGAHSFS-MLAIDTLII 159 Query: 130 AR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLD 163 + RKH + LN+ RY + I + H AL D Sbjct: 160 EKERELRKHQVLKTGSLRLNACRDRYNLPI--YNAHNALTD 198 >gi|323360067|ref|YP_004226463.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum StLB037] gi|323276438|dbj|BAJ76583.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum StLB037] Length = 224 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 10/160 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG+D NDRI+ V +LD + +L G A +HGIT E Sbjct: 3 VFDLETTGVDVVNDRIV-TAHVGVLDADGHVIDARDWLADPGVDIPDGAAAIHGITSERA 61 Query: 71 K-DKPSFSSIFSEFWDFFNEQNAEWI---AHNAKFDVGFINAELQRINKDPLD-PSRIID 125 + D + +E + + A I A+NA FD + E R P++ PS +ID Sbjct: 62 RADGAPAPRVVAEVVEALSALFAAGIPVVAYNAPFDFSMLKHEAVRHGVAPIEAPSPVID 121 Query: 126 TLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 L + + ++ + L+ + + Y + + S H A D Sbjct: 122 PLVVDKTYDRYRRGKRTLSVVAEHYAVPL--ESAHEACAD 159 >gi|301066539|ref|YP_003788562.1| Rad3-like DNA helicase [Lactobacillus casei str. Zhang] gi|300438946|gb|ADK18712.1| Rad3-related DNA helicase [Lactobacillus casei str. Zhang] Length = 931 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 17/160 (10%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTG K+ DR+I+ G L+ + K +T + P+ ++ P A+ +L G+ Sbjct: 12 VVDLETTGTSVKDGDRMIQFGCA-LMQHGKIIQTISQLVNPD--RSVPVAIQRLTGLDPN 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F I + ++AHN FD F+NAE +R+ L + IDT+ Sbjct: 69 RLVAAPYFEEIAKTLHQLLTD--TVFVAHNVNFDYPFLNAEFERVGLPKLQLA-AIDTVE 125 Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDS 164 +A+ P + DL S + I H + H A D+ Sbjct: 126 LAQILLPEISSFRLPDLTSY-----LQIEHDNPHQADSDA 160 >gi|308535281|ref|YP_002138830.2| 3'-to-5' exonuclease [Geobacter bemidjiensis Bem] gi|308052626|gb|ACH39034.2| 3'-to-5' exonuclease, putative [Geobacter bemidjiensis Bem] Length = 312 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 9/113 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS----PEALK-LHG 64 + D ETTGLD K D++IE+G V +T F++ +G ++ PE +K + G Sbjct: 55 LCLDTETTGLDYKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDPGFPIPEEVKEITG 114 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 I+D+ ++ + + F + E++ IAHNA FD F+ A K P Sbjct: 115 ISDDMVRGQ----AFDDAFINLLAEKSHMVIAHNAAFDRKFVEARFPAFTKLP 163 >gi|116494972|ref|YP_806706.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334] gi|116105122|gb|ABJ70264.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334] Length = 928 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 17/160 (10%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTG K+ DR+I+ G L+ + K +T + P+ ++ P A+ +L G+ Sbjct: 9 VVDLETTGTSVKDGDRMIQFGCA-LMQHGKIIQTISQLVNPD--RSVPVAIQRLTGLDPN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F I + ++AHN FD F+NAE +R+ L + IDT+ Sbjct: 66 RLVAAPYFEEIAKTLHQLLTD--TVFVAHNVNFDYPFLNAEFERVGLPKLQLA-AIDTVE 122 Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDS 164 +A+ P + DL S + I H + H A D+ Sbjct: 123 LAQILLPEISSFRLPDLTSY-----LQIEHDNPHQADSDA 157 >gi|311896766|dbj|BAJ29174.1| putative exonuclease [Kitasatospora setae KM-6054] Length = 233 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 6/135 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+E TG R++E+ V+L +T R F + P G +HGI + Sbjct: 6 VVDVEATGRSPWRHRVVEVAVVQLDAGLRTEREFATLVDPGGPVGP---THVHGIAQADV 62 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P F I + + + H+ D F+ E RI L ++ T+ +A Sbjct: 63 LGAPRFRQIAPRLLELLAGRVL--VGHHVTCDRAFLEREFARIGVA-LPQVPLLCTMRLA 119 Query: 131 RRKHPSSRNDLNSLC 145 RR+ P + S C Sbjct: 120 RRQLPEAGGYGLSAC 134 >gi|322372929|ref|ZP_08047465.1| putative CRISPR-associated protein Cas2 [Streptococcus sp. C150] gi|321277971|gb|EFX55040.1| putative CRISPR-associated protein Cas2 [Streptococcus sp. C150] Length = 301 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 12/166 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 +V DIET GLD K + IIEIGAV+ + F + + P A+ KL GI+ Sbjct: 132 VVIDIETDGLDEKKNTIIEIGAVKF--NGQQVEEFNSLI--KYEEKLPTAISKLTGISKS 187 Query: 69 FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L ++ + SEF F + + +N FD+ FIN +L + P+ ++ D + Sbjct: 188 LLDQEGRDLEEVLSEFLLFIGK--LTLVGYNIHFDIQFINNKLNKFGL-PILINKTHDIM 244 Query: 128 SIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLLSDV 170 + + N L + K YGI + HR+ A L HL + V Sbjct: 245 RYVKDEKLFLDNYQLQTALKAYGIEDQVPHRALKDARLIYHLSTKV 290 >gi|191638483|ref|YP_001987649.1| ATP-dependent helicase DinG [Lactobacillus casei BL23] gi|190712785|emb|CAQ66791.1| ATP-dependent helicase DinG [Lactobacillus casei BL23] gi|327382518|gb|AEA53994.1| ATP-dependent helicase [Lactobacillus casei LC2W] gi|327385715|gb|AEA57189.1| ATP-dependent helicase [Lactobacillus casei BD-II] Length = 928 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 17/160 (10%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTG K+ DR+I+ G L+ + K +T + P+ ++ P A+ +L G+ Sbjct: 9 VVDLETTGTSVKDGDRMIQFGCA-LMQHGKIIQTISQLVNPD--RSVPVAIQRLTGLDPN 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F I + ++AHN FD F+NAE +R+ L + IDT+ Sbjct: 66 RLVAAPYFEEIAKTLHQLLTD--TVFVAHNVNFDYPFLNAEFERVGLPKLQLA-AIDTVE 122 Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDS 164 +A+ P + DL S + I H + H A D+ Sbjct: 123 LAQILLPEISSFRLPDLTSY-----LQIEHDNPHQADSDA 157 >gi|322374613|ref|ZP_08049127.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C300] gi|321280113|gb|EFX57152.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C300] Length = 829 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 20/173 (11%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D T+ + P+ +S +L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIENGEIIDQYATD------VNPHEPLDS-HIKEL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 G+TD+ L P FS + + ++ ++ ++AHN +FD + AE L R Sbjct: 59 TGLTDQRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEGYELRTPR 115 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P + +L LC+ GI + H H AL D+ +++ + M Sbjct: 116 -VDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYM 165 >gi|297559294|ref|YP_003678268.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843742|gb|ADH65762.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 243 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 11/151 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD E+TGLD NDRI+ A+ +D + + +L G EA +H IT E Sbjct: 20 AFDTESTGLDLANDRIV-TAALWRIDPAARTKEVTTWLIDPGIDIPQEATDIHHITTEHA 78 Query: 71 KD--KPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKDP-LDPS-RI 123 ++ +P+ ++ E + A+ + +NA +D+G ++AEL+R + D + R+ Sbjct: 79 REHGRPAAEAV-PEIGAALEKAAADGVPVVVYNAPYDLGLLSAELRRHDAGARFDGTLRV 137 Query: 124 IDTLSIARRKHPSSRND--LNSLCKRYGITI 152 +D L I +R R L +C +G+ + Sbjct: 138 LDPLVIDKRFDTFRRGSRKLVDVCAHHGVRL 168 >gi|227535024|ref|ZP_03965073.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187339|gb|EEI67406.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 931 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 17/160 (10%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTG K+ DR+I+ G L+ + K +T + P+ ++ P A+ +L G+ Sbjct: 12 VVDLETTGTSVKDGDRMIQFGCA-LMQHGKIIQTISQLVNPD--RSVPVAIQRLTGLDPN 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F I + ++AHN FD F+NAE +R+ L + IDT+ Sbjct: 69 RLVAAPYFEEIAKTLHQLLTD--TVFVAHNVNFDYPFLNAEFERVGLPKLQLA-AIDTVE 125 Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDS 164 +A+ P + DL S + I H + H A D+ Sbjct: 126 LAQILLPEISSFRLPDLTSY-----LQIEHDNPHQADSDA 160 >gi|325953822|ref|YP_004237482.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922] gi|323436440|gb|ADX66904.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922] Length = 253 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 4/125 (3%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG + DRI+EI V+ Y+ + + + PE +HGI DE +K Sbjct: 10 FDLETTGTNIAKDRIVEIAIVKA--YTNGEKEIKTWRVNPEMPIPPETSLIHGIYDEDVK 67 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSIA 130 D P+F I + + + + N +FD+ + E R D L+ R ID I Sbjct: 68 DAPTFREIAPQIVELIKDSDLAGFNSN-RFDIPLLAEEFLRNGIDFDLEKHRPIDVQVIF 126 Query: 131 RRKHP 135 + P Sbjct: 127 HKMEP 131 >gi|227432020|ref|ZP_03914039.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352218|gb|EEJ42425.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 177 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 7/113 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG+ + + D P F ++ FF E N +AHNA FD + LQ + D +P Sbjct: 52 IHGLHRQDVADAPKFPEVWQTISPFFTE-NKLVVAHNASFDNSILKGTLQYYDID--EPH 108 Query: 122 R-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++DT+ +R+ P+ N LN++ GIT+ H H AL D+ +++ I Sbjct: 109 YLLLDTVQTSRKLFPNFENHKLNTVAGNLGITLDHH--HNALDDAVAAANILI 159 >gi|28871797|ref|NP_794416.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000] gi|28855049|gb|AAO58111.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 204 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 4 RVAVIDFETTGISPNPGCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF + +AHNA FD F + EL RI + Sbjct: 61 SNNMIRTAPSAERVMGDVADFVG--STPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ +ARR P + N Y + H A+ D+ + +++ Sbjct: 117 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAIADAEMAANL 161 >gi|320322651|gb|EFW78744.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076] gi|320330564|gb|EFW86543.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4] Length = 204 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 4 RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVELFQSLM--NAGVRIPAFIEGLTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF +AHNA FD F + EL RI + Sbjct: 61 SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ +ARR P + N Y + H A+ D+ + +++ Sbjct: 117 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 161 >gi|116618623|ref|YP_818994.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097470|gb|ABJ62621.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 177 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 7/113 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG+ + + D P F ++ FF E N +AHNA FD + LQ + D +P Sbjct: 52 IHGLHRQDVADAPKFPEVWQTISPFFTE-NKLVVAHNASFDNSILKGTLQYYDID--EPH 108 Query: 122 R-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++DT+ +R+ P+ N LN++ GIT+ H H AL D+ +++ I Sbjct: 109 YLLLDTVQTSRKLFPNFENHKLNTVAGNLGITLDHH--HNALDDAVAAANILI 159 >gi|229588692|ref|YP_002870811.1| ribonuclease T [Pseudomonas fluorescens SBW25] gi|229360558|emb|CAY47415.1| ribonuclease T [Pseudomonas fluorescens SBW25] Length = 223 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 29/187 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----------GRKNSPE 58 +V D+ET G + D ++EI A + Q F+ P G Sbjct: 31 VVIDVETGGFNCATDALLEIAATTI------GMDEQGFVFPEHTHFFRVEPFEGANIEAA 84 Query: 59 ALKLHGI-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAEL 110 AL+ GI D L+ ++ + + IF A + HN+ FD+GF+NA + Sbjct: 85 ALEFTGIKLDHPLRMAVSEEAALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAV 144 Query: 111 QRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 R++ ++P P DT ++A + + L C+ GI R H A D+ + Sbjct: 145 ARLDMKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTA 202 Query: 169 DVYIKMM 175 +++ ++ Sbjct: 203 ELFCGIV 209 >gi|330888790|gb|EGH21451.1| exonuclease [Pseudomonas syringae pv. mori str. 301020] gi|330987665|gb|EGH85768.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011360|gb|EGH91416.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 203 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 3 RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF +AHNA FD F + EL RI + Sbjct: 60 SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ +ARR P + N Y + H A+ D+ + +++ Sbjct: 116 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 160 >gi|258507958|ref|YP_003170709.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG] gi|257147885|emb|CAR86858.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG] gi|259649285|dbj|BAI41447.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG] Length = 180 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 P+ +++HGIT + ++D+P+F ++ F+ AHNA FDV + L R Sbjct: 47 PQNIRIHGITPDMVQDQPTFDRVWPHIQMFYTPGRI-VTAHNAPFDVSVLRLTLDRYGIA 105 Query: 117 PLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++IDT+ +R+ P N L+++ I + H H AL DS+ + + I Sbjct: 106 -APRYQVIDTVKTSRQFLPKLPNHRLDTVSAALKIPLEHH--HNALADSYACARILI 159 >gi|229551811|ref|ZP_04440536.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1] gi|258539212|ref|YP_003173711.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705] gi|229314755|gb|EEN80728.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1] gi|257150888|emb|CAR89860.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705] Length = 180 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 7/118 (5%) Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-K 115 P+ +++HGIT + ++D+P+F ++ F+ AHNA FDV + L R Sbjct: 47 PQNIRIHGITPDMVQDQPTFDRVWPHIQMFYTPGRI-VTAHNAPFDVSVLRLTLDRYGIA 105 Query: 116 DPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P ++IDT+ +R+ P N L+++ I + H H AL DS+ + + I Sbjct: 106 APR--YQVIDTVKTSRQFLPKLPNHRLDTVSAALKIPLEHH--HNALADSYACARILI 159 >gi|190015910|ref|YP_001965118.1| putative exonuclease [Rhodococcus sp. NS1] gi|114796750|gb|ABI79343.1| putative exonuclease [Rhodococcus sp. NS1] Length = 238 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 30/199 (15%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ET+GLD IIEI ++D + + + + P A+++HG+T Sbjct: 51 ACIVDVETSGLDGS---IIEIA---VIDAATGEVLLNTLVDCSPVEIEPGAVEVHGLTAT 104 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSRIID 125 L P +S +F E +N +A+NAKFD G + + +R DP +P+R Sbjct: 105 DLAGAPRWSEVFPEL--AAATKNRVVLAYNAKFDRGRVLHDCRREGIDPAHLAEPARW-- 160 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHR----SKHGALLDSHLLSDVYIKMMVGGSQI 181 +ARR C+ G+ + R H AL D + V ++M+ G Sbjct: 161 QCVMARR------------CEALGLGLDGRLRLGGGHRALADVR-ATRVVLRMLADGRPD 207 Query: 182 NFGFKTNEDRFFKEEKKTV 200 G R +E ++ Sbjct: 208 TDGSAALAIRAREEAREVA 226 >gi|329298346|ref|ZP_08255682.1| ribonuclease T [Plautia stali symbiont] Length = 222 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A L +D + + T + P G +PEAL G Sbjct: 20 VVIDVETAGFNAQTDALLEIAATTLKMDEDGWLHRDETLHFHVEPFEGAILNPEALAFTG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD F+ A +R + Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGTKDSGCNRAIIVAHNATFDHNFLMATAERTGMK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L CK GI H AL D+ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACKAAGIDFDSTQAHSALYDTKQTATLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|282880819|ref|ZP_06289515.1| DNA polymerase III subunit epsilon domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305353|gb|EFA97417.1| DNA polymerase III subunit epsilon domain protein [Prevotella timonensis CRIS 5C-B1] Length = 183 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 7/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ET K + E G + D K T + P S +++HGI E Sbjct: 7 IAIDFETA--TGKRASVCEAGICVVKD-GKIVETKSWLIRPEDNAYSYWNIQIHGIHPED 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ PSF ++ E + E +AHNA FD+ I L+ + D LD TL Sbjct: 64 TENAPSFPCVWQEILTYLKETPI-LVAHNAAFDISCIRKSLELYHLDTLDVDYYC-TLRA 121 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 AR + + L LC+++ I + H A D+ + + ++++ Sbjct: 122 ARHHYDFECHTLGYLCEQF--EIPEGTHHRAGDDAEMCARLFLR 163 >gi|330870427|gb|EGH05136.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 203 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 3 RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF +AHNA FD F + EL RI + Sbjct: 60 SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ +ARR P + N Y + H A+ D+ + +++ Sbjct: 116 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 160 >gi|302799380|ref|XP_002981449.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii] gi|300150989|gb|EFJ17637.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii] Length = 1254 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 17/178 (9%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 KM IVFD+ETTG + DRIIE A +L ++ T + P GR + GI Sbjct: 174 KMTIIVFDLETTGFRAAGDRIIEFAARDLAGGDRS--TISALVNP-GRTVPYLITAVTGI 230 Query: 66 TDEFLKDK--PSFSSIFSEFWDFFN-----EQNAEWIAHNAK-FDVGFINAELQRINKDP 117 T++ + PS+ + F ++ +AHN K FDV F+ E Q Sbjct: 231 TNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCGIQV 290 Query: 118 LDPSRIIDTLSIARR-KHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + +D++ +AR K N L+ L + YG+ + R+ H A+ D ++L+ V Sbjct: 291 PEWWLFLDSMPLARETKKKFGYNWRSLKLSVLHEAYGLHSTERA-HRAMADVNMLASV 347 >gi|237649440|ref|ZP_04523692.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI 1974] Length = 831 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 22 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 68 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 69 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 126 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 127 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 178 >gi|312963198|ref|ZP_07777682.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6] gi|311282464|gb|EFQ61061.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6] Length = 203 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65 R V D ETTG+ S + R EIG V +L+ +Q + N P + +L GI Sbjct: 3 RIAVIDFETTGITPSSHCRATEIGVV-ILERGHIVDRYQSLM--NAGVRVPAFIEQLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ L+ P + +E +F +AHNA FD F + EL I + L + Sbjct: 60 SNAMLRSAPPAERVMNEVNEFVG--TTPLMAHNAAFDQKFWDYELGLIRRTRLQ--KFAC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +L +ARR P++ N Y H AL D+ + +++ Sbjct: 116 SLLLARRLMPAAPNHKLGTLNSYAQLPHTGQAHRALADAEMAANL 160 >gi|312871342|ref|ZP_07731439.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 3008A-a] gi|312875261|ref|ZP_07735270.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2053A-b] gi|311089224|gb|EFQ47659.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2053A-b] gi|311093135|gb|EFQ51482.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 3008A-a] Length = 177 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 7/116 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +K+HGIT +KD P+ + ++ + F + +AHNA+FD + L++ N + Sbjct: 50 IKIHGITANDVKDAPTMNEVWPKIRLLF-QPGMLVVAHNARFDCNVMKKSLKKYNI--AE 106 Query: 120 PSRI-IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P + IDTL+ +R P+ +N L+++ + I + H H AL DS +++ IK Sbjct: 107 PHYLTIDTLATSRALMPNLKNYRLDTVSNQLNIDLWHH--HNALSDSEACAEILIK 160 >gi|83647672|ref|YP_436107.1| ribonuclease T [Hahella chejuensis KCTC 2396] gi|123531538|sp|Q2SCE2|RNT_HAHCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|83635715|gb|ABC31682.1| ribonuclease T [Hahella chejuensis KCTC 2396] Length = 218 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 25/185 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQV--FLCPNGRKNSPEALK 61 +V D+ET G +SK D ++E+ AV + + Y + +F V F N + AL+ Sbjct: 22 VVVDVETAGFNSKTDALLEVSAVIISMEDDGMLYPEPPVSFNVEPFAGANIEQ---AALE 78 Query: 62 LHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQR 112 GI D F L+D + +E + + A + HNA FD F+ A +R Sbjct: 79 FTGI-DPFNPLRDAKPEADALNELFRPIRKSVKSNGCNRAILVGHNATFDHSFLFAAAER 137 Query: 113 --INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + ++P P DT ++A + L+ C+ GI ++ H A D+ +++ Sbjct: 138 GDVKRNPFHPFSTFDTATLAALAY--GHTVLSRACQLAGIPFDNKEAHSAEYDAMKTAEL 195 Query: 171 YIKMM 175 + ++ Sbjct: 196 FCSIV 200 >gi|330961648|gb|EGH61908.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326] Length = 203 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 3 RIAVIDFETTGISPNHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF +AHNA FD F + EL RI + Sbjct: 60 SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ +ARR P + N Y + H A+ D+ + +++ Sbjct: 116 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 160 >gi|239631939|ref|ZP_04674970.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526404|gb|EEQ65405.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 309 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 18/175 (10%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-AL 60 IR+ IV DIETTGL S +D II++ A+++ + K TF ++ P+ + PE + Sbjct: 38 IRRKLYDYIVLDIETTGLSSVSDDIIQLSALKVKE-DKVIDTFDSYVKPS--TSIPENVV 94 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119 + GIT+ +++ P I +F F + + HN +FD+ FI N + Sbjct: 95 YITGITNSTVENAPEIFEIMPKFVSF--TEGMPLVGHNIIRFDIPFIVN-----NGFYYE 147 Query: 120 PSRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +DT +A+ K P L +L + +GI+ S H AL D VY Sbjct: 148 DIEALDTWRLAKNKDFPEPLKNLKLPTLKEYFGIS---GSSHNALDDCKTTITVY 199 >gi|182683721|ref|YP_001835468.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14] gi|182629055|gb|ACB90003.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|289649837|ref|ZP_06481180.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250] Length = 204 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 4 RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF +AHNA FD F + EL RI + Sbjct: 61 SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ +ARR P + N Y + H A+ D+ + +++ Sbjct: 117 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 161 >gi|257482174|ref|ZP_05636215.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488861|ref|ZP_07006886.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156614|gb|EFH97709.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 204 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 4 RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF +AHNA FD F + EL RI + Sbjct: 61 SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ +ARR P + N Y + H A+ D+ + +++ Sbjct: 117 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 161 >gi|227499152|ref|ZP_03929287.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904599|gb|EEH90517.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 228 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 15/161 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E G D IIEI A+++ + F+ + P K S ++ GIT + Sbjct: 56 VVFDLELAGY--AEDDIIEIAAIKVDFLGRQTAVFRELIRPRT-KISKRVTEMTGITRDM 112 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF-DVGFINAELQRIN----KDP-LDPSRI 123 +KDKP + F+ F + + + H+ + D+ IN +R + P LD SR+ Sbjct: 113 VKDKPQLPEVLKRFFAFV--EGSAVMGHDIGYNDIMAINLACRRYGMKAFRPPFLDTSRL 170 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 I L R+ + L +L + I I HR H AL D Sbjct: 171 I--LRHLSREAVGGKTGLAALLAHFNIPI-HRH-HEALADC 207 >gi|331266715|ref|YP_004326345.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5] gi|326683387|emb|CBZ01005.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5] Length = 830 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 10/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ R +V D+E T SK +II++G V +++ + + P+ +S Sbjct: 1 MMNARNDRYVVVDLEATSTGSKA-KIIQVGIV-VIENGDIIDQYATDVNPHEPLDS-HIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD+ L P FS + + ++ ++ ++AHN +FD + AE L Sbjct: 58 ELTGLTDQRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEGYELRT 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R +DT+ +A+ +P + +L LC+ GI + H H AL D+ +++ + M Sbjct: 115 PR-VDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYM 166 >gi|313674243|ref|YP_004052239.1| exonuclease RNAse t and DNA polymerase iii [Marivirga tractuosa DSM 4126] gi|312940941|gb|ADR20131.1| Exonuclease RNase T and DNA polymerase III [Marivirga tractuosa DSM 4126] Length = 267 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 21/160 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67 ++FD+ETTG + NDRI+E V+++ D T +V N + P E+ +HGI D Sbjct: 10 VIFDLETTGTNVVNDRIVEYSFVKVMPDGDVIKNTEKV----NPERPIPLESSLIHGIYD 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126 + +KDKP+F ++ E F + + N KFDV + E R + D Sbjct: 66 KDVKDKPTFKAMAKELSSFLH--GCDLAGFNILKFDVPVLVEEFLRADVD---------- 113 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHG-ALLDSH 165 I++RK ++ + + KR +T +++ G L+D+H Sbjct: 114 FDISKRKLLDAQKIFHMMEKR-TLTAAYKFYCGKELVDAH 152 >gi|307127646|ref|YP_003879677.1| DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae 670-6B] gi|306484708|gb|ADM91577.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae 670-6B] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|289627588|ref|ZP_06460542.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 204 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 R V D ETTG+ + R EI AV +++ + FQ + N P ++ L GI Sbjct: 4 RIAVIDFETTGISPGHSCRATEI-AVVIMEQGRIVERFQSLM--NAGVRIPAFIEGLTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ PS + + DF +AHNA FD F + EL RI + Sbjct: 61 SNNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFAC 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ +ARR P + N Y + H A+ D+ + +++ Sbjct: 117 SMLLARRLMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANL 161 >gi|285018765|ref|YP_003376476.1| ribonuclease t (exoribonuclease t) (rnase t) protein [Xanthomonas albilineans GPE PC73] gi|283473983|emb|CBA16484.1| probable ribonuclease t (exoribonuclease t) (rnase t) protein [Xanthomonas albilineans] Length = 217 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 17/180 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCPN-GRKNSPEALKLHG 64 +V D+ET G D ++EI + + +D + T + P G P++L++ G Sbjct: 27 VVVDVETGGFDWNRHALLEIAVIPIEMDAAGKLSPGDTASAHVVPAPGTVIDPKSLEITG 86 Query: 65 IT--DEFLKDKPSFSSIFSEFWDF------FNEQNAEWIAHNAKFDVGFINAELQRIN-- 114 I F KP ++ F + Q A + HNA FD+ F+NA + R Sbjct: 87 IVLDHPFRLAKPEREALEHVFTPVRAAVKKYGCQRAILVGHNAHFDLNFLNATVARCGHK 146 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P + DT+++A + + L + G S H A+ D+ + ++ K+ Sbjct: 147 RNPFHPFSVFDTVTLAGIAY--GQTVLARAVQAAGFEWSAADAHSAVYDTEQTARLFCKI 204 >gi|169633084|ref|YP_001706820.1| ribonuclease T [Acinetobacter baumannii SDF] gi|169796663|ref|YP_001714456.1| ribonuclease T [Acinetobacter baumannii AYE] gi|184157422|ref|YP_001845761.1| ribonuclease T [Acinetobacter baumannii ACICU] gi|213156111|ref|YP_002318531.1| ribonuclease T [Acinetobacter baumannii AB0057] gi|215484153|ref|YP_002326378.1| ribonuclease T [Acinetobacter baumannii AB307-0294] gi|239503321|ref|ZP_04662631.1| ribonuclease T [Acinetobacter baumannii AB900] gi|260550758|ref|ZP_05824966.1| ribonuclease T [Acinetobacter sp. RUH2624] gi|260557371|ref|ZP_05829586.1| ribonuclease T [Acinetobacter baumannii ATCC 19606] gi|301347763|ref|ZP_07228504.1| ribonuclease T [Acinetobacter baumannii AB056] gi|301512246|ref|ZP_07237483.1| ribonuclease T [Acinetobacter baumannii AB058] gi|301596674|ref|ZP_07241682.1| ribonuclease T [Acinetobacter baumannii AB059] gi|332854542|ref|ZP_08435420.1| ribonuclease T [Acinetobacter baumannii 6013150] gi|332870163|ref|ZP_08439075.1| ribonuclease T [Acinetobacter baumannii 6013113] gi|332875101|ref|ZP_08442937.1| ribonuclease T [Acinetobacter baumannii 6014059] gi|169149590|emb|CAM87480.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter baumannii AYE] gi|169151876|emb|CAP00718.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter baumannii] gi|183209016|gb|ACC56414.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU] gi|213055271|gb|ACJ40173.1| ribonuclease T [Acinetobacter baumannii AB0057] gi|213986450|gb|ACJ56749.1| ribonuclease T [Acinetobacter baumannii AB307-0294] gi|260406264|gb|EEW99748.1| ribonuclease T [Acinetobacter sp. RUH2624] gi|260408997|gb|EEX02300.1| ribonuclease T [Acinetobacter baumannii ATCC 19606] gi|322507302|gb|ADX02756.1| Ribonuclease T [Acinetobacter baumannii 1656-2] gi|323517321|gb|ADX91702.1| ribonuclease T [Acinetobacter baumannii TCDC-AB0715] gi|332727951|gb|EGJ59346.1| ribonuclease T [Acinetobacter baumannii 6013150] gi|332732430|gb|EGJ63686.1| ribonuclease T [Acinetobacter baumannii 6013113] gi|332736718|gb|EGJ67709.1| ribonuclease T [Acinetobacter baumannii 6014059] Length = 220 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 22/185 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI + ++ ++ F + P G +L G Sbjct: 24 VVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDRRSLDFIG 83 Query: 65 ITDEF--------LKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRI 113 I D F ++ + IF + +Q +A + HNA FD+GF+ A + R Sbjct: 84 I-DPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQAAIARS 142 Query: 114 ---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 N++P ++DT++++ + L C + GI + H AL D+ +++ Sbjct: 143 GTKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDTQKTAEL 200 Query: 171 YIKMM 175 + ++ Sbjct: 201 FCYIL 205 >gi|149010565|ref|ZP_01831936.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP19-BS75] gi|147765046|gb|EDK71975.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP19-BS75] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|332202666|gb|EGJ16735.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA41317] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|225861294|ref|YP_002742803.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae Taiwan19F-14] gi|298230625|ref|ZP_06964306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255368|ref|ZP_06978954.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503192|ref|YP_003725132.1| DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae TCH8431/19A] gi|225726410|gb|ACO22261.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae Taiwan19F-14] gi|298238787|gb|ADI69918.1| DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae TCH8431/19A] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|169833275|ref|YP_001694265.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae Hungary19A-6] gi|168995777|gb|ACA36389.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae Hungary19A-6] gi|327390159|gb|EGE88502.1| putative dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA04375] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|168486184|ref|ZP_02710692.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1087-00] gi|183570792|gb|EDT91320.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1087-00] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|148985845|ref|ZP_01818939.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP3-BS71] gi|148990415|ref|ZP_01821581.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP6-BS73] gi|168575465|ref|ZP_02721401.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae MLV-016] gi|194397188|ref|YP_002037447.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae G54] gi|307067407|ref|YP_003876373.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200] gi|147921991|gb|EDK73115.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP3-BS71] gi|147924320|gb|EDK75413.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP6-BS73] gi|183578476|gb|EDT99004.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae MLV-016] gi|194356855|gb|ACF55303.1| Dna polymerase III, epsylon subunit/ATP-dependent helicase DinG [Streptococcus pneumoniae G54] gi|301799817|emb|CBW32386.1| putative exonuclease [Streptococcus pneumoniae OXC141] gi|306408944|gb|ADM84371.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|148992472|ref|ZP_01822167.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP9-BS68] gi|149007688|ref|ZP_01831305.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP18-BS74] gi|168489814|ref|ZP_02714013.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae SP195] gi|147760843|gb|EDK67814.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP18-BS74] gi|147928789|gb|EDK79802.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP9-BS68] gi|183571801|gb|EDT92329.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae SP195] gi|332077219|gb|EGI87681.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA17545] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|160895546|ref|YP_001561128.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1] gi|160361130|gb|ABX32743.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1] Length = 211 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 8/148 (5%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ ++ R E+ A+ L++ + FQ + G P +L GIT+ Sbjct: 7 VIDFETTGMAPAQGARATEV-AIVLIEGGQVVDRFQSLMR-TGAWIPPFITRLTGITNAM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + + F +A +AHNA FD F +EL + P T+ + Sbjct: 65 VAAAPPAEEVMRDAARFVG--SAPMVAHNAAFDSKFWQSELALAGEA--APQPFACTVLL 120 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRS 156 +RR +P + + L+ L G+ ++ R+ Sbjct: 121 SRRIYPEAPSHSLSRLTAHLGLPVAERA 148 >gi|260903685|ref|ZP_05912007.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Brevibacterium linens BL2] Length = 578 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 10/112 (8%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 ++ R + FD+ETTG+D RI+ VE + ++T +L G + A +HG Sbjct: 357 SQSRLVGFDLETTGVDPATARIVTAAFVESAENART------WLADPGVEIPEPARAVHG 410 Query: 65 ITDEFLK-DKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQR 112 IT EF + + + + +E + AE + HN +D+ ++AE++R Sbjct: 411 ITTEFAQANGAPVAEVVAELCTVLADLKAEGAVVVGHNIVYDLSVMSAEVKR 462 >gi|228474048|ref|ZP_04058789.1| exonuclease [Capnocytophaga gingivalis ATCC 33624] gi|228274562|gb|EEK13403.1| exonuclease [Capnocytophaga gingivalis ATCC 33624] Length = 257 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 6/114 (5%) Query: 5 NKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N R I F D+ETTG D DRI+EI +++ + NR + +L P + +H Sbjct: 4 NLTRPICFFDLETTGTDVSRDRIVEISILKV--WPNGNRESKTYLVNPTIPIPPASTAIH 61 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 GI+DE + P+F + + ++++ +N+ +FD+ + EL R D Sbjct: 62 GISDERVAQAPTFKELAKQIHAMI--KDSDLAGYNSDRFDIPLLAEELLRAGVD 113 >gi|332669588|ref|YP_004452596.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC 484] gi|332338626|gb|AEE45209.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC 484] Length = 239 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 19/156 (12%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTGLD DRI+ V D + T+ + +L G + A +HG++ E K Sbjct: 11 FDTETTGLDVDRDRIVTAALVR-RDAAGTH--VRTWLLDPGVEIPEAAASIHGVSTEHAK 67 Query: 72 -----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR---- 122 K + I +E F +A+NA FD+ ++AEL+R ++ P P R Sbjct: 68 AHGVAPKAALDEIATELAGAFR-AGVPVVAYNAAFDLCLLDAELRR-HRLPTLPDRLLGA 125 Query: 123 ---IIDTLSIARR--KHPSSRNDLNSLCKRYGITIS 153 +ID L + R + + L LC Y + S Sbjct: 126 ARPVIDPLVLDRAVDREREGKRKLVDLCGVYEVVES 161 >gi|116671305|ref|YP_832238.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24] gi|116611414|gb|ABK04138.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24] Length = 254 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/227 (22%), Positives = 101/227 (44%), Gaps = 23/227 (10%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +K + FD+ETTG +S+ RI+ +V ++D + T +L G + EA ++HG Sbjct: 23 DKRPRAAFDLETTGRNSRAARIV-TASVTVVDADGSVITEHEWLADPGIEIPAEASEVHG 81 Query: 65 ITDE--FLKDKPS------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 +T E L+ +P+ +S+ +D IA NA +D + AE R Sbjct: 82 VTTERARLEGRPAAEVTRELASVLQGLFD----DGIPVIAFNASYDFTVLAAESARYGIP 137 Query: 117 PLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYI 172 L+ ++D + ++ + + L +LC+ Y + + +H S AL +L + Sbjct: 138 QLNRFPVLDPYIMNKQVDRFRKGKRTLTALCEEYKVNLDNAHTSAADALATLRMLDAMAG 197 Query: 173 KM----MVGGS--QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 K M G Q+ G+ ++ F+ + ++++ + P+ Sbjct: 198 KFPKLRMAAGQLHQLQVGWAASQAADFQTYLRKTKPAAVIEGEWPVL 244 >gi|225856476|ref|YP_002737987.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae P1031] gi|225724714|gb|ACO20566.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae P1031] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|168490899|ref|ZP_02715042.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC0288-04] gi|221231602|ref|YP_002510754.1| exonuclease [Streptococcus pneumoniae ATCC 700669] gi|225854318|ref|YP_002735830.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae JJA] gi|183574742|gb|EDT95270.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC0288-04] gi|220674062|emb|CAR68575.1| putative exonuclease [Streptococcus pneumoniae ATCC 700669] gi|225723482|gb|ACO19335.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae JJA] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|168484461|ref|ZP_02709413.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1873-00] gi|172042316|gb|EDT50362.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1873-00] gi|332203958|gb|EGJ18025.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA47368] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|149003435|ref|ZP_01828324.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP14-BS69] gi|237821000|ref|ZP_04596845.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI 1974M2] gi|147758618|gb|EDK65616.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP14-BS69] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|15902755|ref|NP_358305.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae R6] gi|116516668|ref|YP_816199.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae D39] gi|15458302|gb|AAK99515.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6] gi|116077244|gb|ABJ54964.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae D39] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|332204813|gb|EGJ18878.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA47901] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|301793959|emb|CBW36355.1| putative exonuclease [Streptococcus pneumoniae INV104] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|225858612|ref|YP_002740122.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae 70585] gi|225720171|gb|ACO16025.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae 70585] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|33593048|ref|NP_880692.1| putative exonuclease [Bordetella pertussis Tohama I] gi|33563423|emb|CAE42302.1| putative exonuclease [Bordetella pertussis Tohama I] gi|332382461|gb|AEE67308.1| putative exonuclease [Bordetella pertussis CS] Length = 224 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 10/156 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD-E 68 +V D+ETTGL I+E AV + + R F + +GR P +L GIT E Sbjct: 58 VVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGRV-LPFISRLTGITQAE 116 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +D F +F DF + HNA FD F+ A R P + ++ TL Sbjct: 117 VERDGVPVRQAFGDFLDFI--EGGPLFFHNASFDRRFLQAAADRTGL-PFE-AQTHCTLM 172 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163 +AR+ P + LN L + G + H AL D Sbjct: 173 LARQAWPELPSHKLNVLARHLG---ASEPTHRALAD 205 >gi|318041263|ref|ZP_07973219.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp. CB0101] Length = 304 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 10/167 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R ++ D ETTGLD + DR IE+GAV L D + + QV L +N +A ++GI Sbjct: 72 PQRLLILDTETTGLDPQRDRCIELGAV-LFDVPRRSVLSQVSLLLPCEQNPAQA--VNGI 128 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRII 124 D L +P ++++ + +AHNA FD + A L I+K L + Sbjct: 129 -DPRLTQQPQPWQQGLQWFEALLAASDVVVAHNAAFDRQWFGIAPLPAIDKPWLC---SM 184 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + + +H S + L Y + + + H AL D L+ V+ Sbjct: 185 EDIRWPADRHLRSNPSVRDLALAYSVPVW--AAHRALTDCIYLAQVF 229 >gi|315127113|ref|YP_004069116.1| hypothetical protein PSM_A2044 [Pseudoalteromonas sp. SM9913] gi|315015627|gb|ADT68965.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 718 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 6/104 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 V DIETTG +RI EIG V++ + T+ + P + P + L GI D Sbjct: 556 VVDIETTGGLKGGNRITEIGIVKI-KQGEIVDTWTTLINP--ERPIPRFITSLTGINDAM 612 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 + + P FS I + + + + ++AHN FD GFI EL+RI Sbjct: 613 VSNAPIFSEIAAPLLNQLS--GSIFVAHNVNFDYGFIKKELERI 654 >gi|262372115|ref|ZP_06065394.1| ribonuclease T [Acinetobacter junii SH205] gi|262312140|gb|EEY93225.1| ribonuclease T [Acinetobacter junii SH205] Length = 221 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 24/186 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S+ D ++EI + ++ Y + + F + P G +L Sbjct: 25 VVVDVETAGFNSQTDALLEIACIPIV-YDQQGQFIPGPAFHAHINPFEGANLDRRSLDFI 83 Query: 64 GITDEF--------LKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR 112 GI D F ++ + IF + Q +A + HNA FD+GF+ A + R Sbjct: 84 GI-DPFNPMRVAMAEDERGALRRIFKSLNEVRKAQHCTHAVLVGHNAHFDLGFLQAAIAR 142 Query: 113 I---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 N++P + DT++++ + L C + GI + H AL D+ ++ Sbjct: 143 SGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLARACIQAGIEFDGKEAHSALYDTQKTAE 200 Query: 170 VYIKMM 175 ++ ++ Sbjct: 201 LFCYIL 206 >gi|170718052|ref|YP_001785090.1| ribonuclease T [Haemophilus somnus 2336] gi|168826181|gb|ACA31552.1| ribonuclease T [Haemophilus somnus 2336] Length = 218 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 30/197 (15%) Query: 2 IRKNKMR---KIVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFL 48 + KN+ R ++ D+ET G +++ D ++ E G L+ K + Q F Sbjct: 13 LLKNRFRGFFPVIIDVETAGFNAQTDALLELAALTLKMDENGL--LVPDEKCHFHIQPF- 69 Query: 49 CPNGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAK 100 G +PE+LK +GI D L+ S + SE + Q + +AHNA Sbjct: 70 --EGANINPESLKFNGIDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNAT 127 Query: 101 FDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 FD F+ A +R I ++P P I DT +++ + L C+ I+ + H Sbjct: 128 FDQSFVMAAAERTKIKRNPFHPFSIFDTATLSGFMF--GQTVLVKGCQVANISFDGKKAH 185 Query: 159 GALLDSHLLSDVYIKMM 175 AL D+ ++++ M+ Sbjct: 186 SALYDAERTAELFCYMV 202 >gi|254228313|ref|ZP_04921740.1| DNA polymerase III subunit epsilon [Vibrio sp. Ex25] gi|262394378|ref|YP_003286232.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|151939119|gb|EDN57950.1| DNA polymerase III subunit epsilon [Vibrio sp. Ex25] gi|262337972|gb|ACY51767.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] Length = 248 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+++ D I+ IG V +D + + + + PN R+ + E++ +HGITD Sbjct: 59 VSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWVVNPN-RELNEESVVIHGITDS 117 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127 +K+ P + I E D + + + H + F NA L I + P ++DTL Sbjct: 118 EVKNAPQLTHILGEILDALSGKVV--LVHYKNIERQFFNNALLNSIGEGIHFP--VVDTL 173 Query: 128 SIARRKHPSSRNDLNSLCKRY------GITISH---RSKHGALLDSHLLSDVYIKMMVGG 178 I +H R + + L + + + H R + A H L+D + Sbjct: 174 DI---EHAIQRRECSGLFNKLKGKKPGSVRLGHARERYRLPAYQPHHALTDALATAELFQ 230 Query: 179 SQINFGF 185 +Q+ + F Sbjct: 231 AQLQYHF 237 >gi|15900695|ref|NP_345299.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae TIGR4] gi|111658147|ref|ZP_01408844.1| hypothetical protein SpneT_02000672 [Streptococcus pneumoniae TIGR4] gi|149021672|ref|ZP_01835703.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72] gi|14972279|gb|AAK74939.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus pneumoniae TIGR4] gi|147930133|gb|EDK81119.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 30/189 (15%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLRK 167 Query: 177 GGSQINFGF 185 +Q+ G Sbjct: 168 KMTQLPKGL 176 >gi|323464450|gb|ADX76603.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus pseudintermedius ED99] Length = 900 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 26/162 (16%) Query: 11 VFDIETTGLDSKNDRIIEIGAV-----ELLDYS----KTNRTFQVFLCPNGRKNSPEALK 61 V D+ETTG + D II+IG +++D+ KT+ T F+ +AL Sbjct: 9 VVDLETTGNQADYDEIIQIGITFVRNNQIIDHYHSMIKTDLTIPTFI---------QALT 59 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 I +E L P F + + + ++ ++AHN FD+ F+ ++ + P Sbjct: 60 --SIEEEMLNQAPYFKEVAHKIYS--KIKDCIFVAHNVNFDLNFLKRSFKKCHIH-YQPK 114 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGA 160 ++IDTL + + P+ ++ L L + GI T +HR+ A Sbjct: 115 KVIDTLELFKIAFPTEKSYQLTELAESLGIPLTQAHRADEDA 156 >gi|319892447|ref|YP_004149322.1| DinG family ATP-dependent helicase YoaA [Staphylococcus pseudintermedius HKU10-03] gi|317162143|gb|ADV05686.1| DinG family ATP-dependent helicase YoaA [Staphylococcus pseudintermedius HKU10-03] Length = 900 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 26/162 (16%) Query: 11 VFDIETTGLDSKNDRIIEIGAV-----ELLDYS----KTNRTFQVFLCPNGRKNSPEALK 61 V D+ETTG + D II+IG +++D+ KT+ T F+ +AL Sbjct: 9 VVDLETTGNQADYDEIIQIGITFVRNNQIIDHYHSMIKTDLTIPTFI---------QALT 59 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 I +E L P F + + + ++ ++AHN FD+ F+ ++ + P Sbjct: 60 --SIEEEMLNQAPYFKEVAHKIYS--KIKDCIFVAHNVNFDLNFLKRSFKKCHIH-YQPK 114 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGA 160 ++IDTL + + P+ ++ L L + GI T +HR+ A Sbjct: 115 KVIDTLELFKIAFPTEKSYQLTELAESLGIPLTQAHRADEDA 156 >gi|307704598|ref|ZP_07641501.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK597] gi|307621843|gb|EFO00877.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK597] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 22/172 (12%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLH--- 63 R +V D+E T SK +II++G V + D +R T V N E L H Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGKIVDRYTTDV--------NPHEPLDAHIQE 57 Query: 64 --GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 G+TD+ L P FS + + +D ++ ++AHN +FD + L + +P Sbjct: 58 LTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNPR 115 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 116 --VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|220920098|ref|YP_002495399.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS 2060] gi|219944704|gb|ACL55096.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] Length = 223 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 4/105 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLD + D I+ + A+ + D T+ +F+ + + R +SPEA+K+H + + Sbjct: 32 VALDCETTGLDPRRDEIVAVAAIRIRGDRILTSESFRATVQ-SQRPSSPEAIKVHRLLEA 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 ++ + E F + + + FDVG ++ +RI Sbjct: 91 EIRQGMPHDVMLPELLRFIGSRPV--VGYYTDFDVGMVDKYARRI 133 >gi|295425759|ref|ZP_06818444.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664] gi|295064567|gb|EFG55490.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664] Length = 318 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 11/165 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITDE 68 + DIETTGL DR+IE+GA+++ + + L + N A KL+GIT+E Sbjct: 35 LLDIETTGLSPYRDRVIELGAIKVRNGEIVDEYSH--LVAYDKSNCVPAFITKLNGITEE 92 Query: 69 -FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + +F F + I +N FD+ FI +L + P + +D L Sbjct: 93 KIINEGIPVAEAIHDFRQFIGDD--VIIGYNVNFDLNFI-YDLAKKYHLPELNNNYVDVL 149 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +AR +P R N L +R G I+ +H L DS VY Sbjct: 150 RLARAYYPKERHNRLIDCMQRAG--IAQVEQHRGLDDSIDTKKVY 192 >gi|195952795|ref|YP_002121085.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1] gi|195932407|gb|ACG57107.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1] Length = 196 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 8/156 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTGL+ IIEI A L++ + + F + P G ++ GIT+ Sbjct: 13 VVLDIETTGLNPDEHEIIEIFAF-LVEKERITKQFHRLINP-GFFIPRRITEITGITNAM 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L +P I +F +F ++ + HN KFD+ F++ L+ I TL + Sbjct: 71 LVGQPKVEGIIYDFDNFV--KDYIIVGHNVKFDLSFLSKAYSIYLHKKLNSPNIC-TLEL 127 Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALL 162 +++ P+ ++ L+++ + I HR+K ALL Sbjct: 128 SKKLIPNLKSYKLSAVADYFNIKYERLHRAKDDALL 163 >gi|148997118|ref|ZP_01824772.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP11-BS70] gi|147756818|gb|EDK63858.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP11-BS70] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 30/189 (15%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLRE 167 Query: 177 GGSQINFGF 185 +Q+ G Sbjct: 168 KMTQLPKGL 176 >gi|67077901|ref|YP_245521.1| DNA polymerase III fragment [Bacillus cereus E33L] gi|66970207|gb|AAY60183.1| possible exonuclease [Bacillus cereus E33L] Length = 287 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 10/100 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 ++ D ETTGL + D+IIEI ++L N + + N P EA +HGIT++ Sbjct: 132 VILDTETTGLTLR-DQIIEICVIDLTGKILLNSLVKPTI------NIPAEAASIHGITNK 184 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 + D PS+ I+ E + + +NA+FD+G I + Sbjct: 185 MVHDAPSWIEIYKELCEV--TAGKTLLIYNAEFDLGMIES 222 >gi|116618479|ref|YP_818850.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097326|gb|ABJ62477.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 797 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 15/169 (8%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG K RII+IG + + + F+ F+ P G+ + +L I+ + Sbjct: 8 VVVDLETTGHSVKKGGRIIQIG-MTFIKKRQIVDHFESFVNP-GQLIDRQIQQLTHISQK 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P F I + QN IAHN FD ++N E +R PL S IDT+ Sbjct: 66 DVQNAPYFEEIAPLLQNLL--QNTVIIAHNVNFDYPYLNDEFERTGF-PLLKSAAIDTVQ 122 Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A+ P++ DL + + I+ ++ H A D+H + +++K Sbjct: 123 LAQILFPTAPGYRLLDLTTY-----LNITLKNAHRANADAHATALLFLK 166 >gi|116491119|ref|YP_810663.1| Rad3-related DNA helicase [Oenococcus oeni PSU-1] gi|118586913|ref|ZP_01544346.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163] gi|290890627|ref|ZP_06553698.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429] gi|116091844|gb|ABJ56998.1| 3'-5' exonuclease domain and Rad3-related DNA helicase [Oenococcus oeni PSU-1] gi|118432640|gb|EAV39373.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163] gi|290479755|gb|EFD88408.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429] Length = 489 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 8/164 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETT + II+IG + + K FQ + P G K + + L GI +E + Sbjct: 9 IVDLETTAPFKEGGHIIQIG-ISFVKNWKIINNFQTMVNP-GVKIPEQIVDLTGIKNEDV 66 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P F + D ++AHN ++D ++N E RI L +DT+ +A Sbjct: 67 ENAPYFEDLARMIHD--QLSGTVFVAHNVRYDFPYLNGEFARIKMRRLR-LEYVDTVQLA 123 Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVY 171 + P+ + L+ L + GI + HR+ A + L ++ Sbjct: 124 QIVFPTMNSYKLDELVSKLGINLPRHHRADQDASATAQLFLKIH 167 >gi|283785135|ref|YP_003365000.1| ribonuclease T [Citrobacter rodentium ICC168] gi|282948589|emb|CBG88180.1| ribonuclease T [Citrobacter rodentium ICC168] Length = 214 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNARTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD F+ A +R + Sbjct: 80 IDPNNPLRGAVSEYDALHAIFKMVRKGIKDNGCNRAIMVAHNATFDHSFMMAAAERASLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L+ C G+ H AL D+ + ++ ++ Sbjct: 140 RNPFHPFVTFDTAALSGLA--LGQTVLSKACLAAGMEFDGTQAHSALYDTERTAVLFCEI 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|77359544|ref|YP_339119.1| DNA polymerase [Pseudoalteromonas haloplanktis TAC125] gi|76874455|emb|CAI85676.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas haloplanktis TAC125] Length = 207 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 13/174 (7%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K R +V D+E TGLD+K I+ + V +++ + L KN ++ HGI Sbjct: 22 KQRYLVIDLELTGLDAKQHEIVSLAWV-VIENQCIKMSQSQHLINKEVKNLAQSPVYHGI 80 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ + S SI + FN+ + HNA D GF+ L+ N P I+ Sbjct: 81 NNDNVAAGQSLHSILEHLSEHFND--CILVFHNAMLDWGFLKPALKNANITT-RPKLILC 137 Query: 126 TLSIARRKHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 TL I +++ + LN RY + H H AL D+ +++++ Sbjct: 138 TLQIEKKRLQHQGVEIKQDDLTLNECRNRYELPSYH--CHHALTDAQATAELFL 189 >gi|239636871|ref|ZP_04677870.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus warneri L37603] gi|239597545|gb|EEQ80043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus warneri L37603] Length = 902 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 12/162 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + N+ + + P L I + Sbjct: 8 VVDLETTGNQLDYDDIIQIG----ITFVRQNKIIGTYHSMIRTDLDIPPFIQALTSIEET 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I + + Q ++AHN FD+ FI + N P R++DTL Sbjct: 64 MLEKAPYFKEIAHDIYQ--QLQECVFVAHNVAFDLNFIKKAFKNCNI-KYRPKRVLDTLE 120 Query: 129 IARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 + + P+ ++ L+ L + + I + +HR+ A + L+ Sbjct: 121 LFKIAFPTDKSYQLSELAEAHDIPLNNAHRADEDATTTAQLM 162 >gi|303255784|ref|ZP_07341825.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455] gi|303260270|ref|ZP_07346241.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP-BS293] gi|303261476|ref|ZP_07347424.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP14-BS292] gi|303264144|ref|ZP_07350065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397] gi|303266246|ref|ZP_07352137.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457] gi|303268684|ref|ZP_07354474.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458] gi|301801646|emb|CBW34344.1| putative exonuclease [Streptococcus pneumoniae INV200] gi|302597168|gb|EFL64273.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455] gi|302637610|gb|EFL68097.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP14-BS292] gi|302638594|gb|EFL69058.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP-BS293] gi|302641744|gb|EFL72101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458] gi|302644176|gb|EFL74432.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457] gi|302646549|gb|EFL76775.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397] Length = 816 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|315022360|gb|EFT35388.1| DNA Pol III Epsilon Chain [Riemerella anatipestifer RA-YM] gi|325336512|gb|ADZ12786.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases [Riemerella anatipestifer RA-GD] Length = 254 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 8/128 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 +FD+ETTG + DRI+EI +++ D S+ +T+ V N + P A +HGI+DE Sbjct: 11 IFDLETTGTNISKDRIVEICILKVNPDASRETKTWLV----NPEMHIPAFATAVHGISDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127 +KD P+ I + + + + N +FDV + E+ R D L +++D Sbjct: 67 DVKDAPTLKEIAPKIMEMISGADLGGFNSN-RFDVPLLAEEMLRAGVDFDLSKMKLVDAQ 125 Query: 128 SIARRKHP 135 I + P Sbjct: 126 VIFHKMEP 133 >gi|302773125|ref|XP_002969980.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii] gi|300162491|gb|EFJ29104.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii] Length = 1208 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 17/178 (9%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 KM IVFD+ETTG + DRIIE A +L ++ T + P GR + GI Sbjct: 174 KMTIIVFDLETTGFRAAGDRIIEFAARDLAGGDRS--TISALVNP-GRTVPYLITAVTGI 230 Query: 66 TDEFLKDK--PSFSSIFSEFWDFFN-----EQNAEWIAHNAK-FDVGFINAELQRINKDP 117 T++ + PS+ + F ++ +AHN K FDV F+ E Q Sbjct: 231 TNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCGIQV 290 Query: 118 LDPSRIIDTLSIARR-KHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + +D++ +AR K N L+ L + YG+ + R+ H A+ D ++L+ V Sbjct: 291 PEWWLFLDSMPLAREAKKKFGYNWRSLKLSVLHEAYGLHSTERA-HRAMADVNMLASV 347 >gi|288905684|ref|YP_003430906.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus UCN34] gi|288732410|emb|CBI13982.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus UCN34] Length = 834 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 7/136 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + + D+E TG + + II++G V +++ + +T+Q + P+ S + Sbjct: 8 MMQVNSQKYAIVDLEATGAHAMAE-IIQVGIV-IIENDEIVKTYQTDVNPH-EALSEHII 64 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + E + ++ ++AHN KFD + +L + P Sbjct: 65 NLTGITDEQLAKAPDFSQVAQEVFSLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 122 Query: 121 SRIIDTLSIARRKHPS 136 +DT+ +A+ +P+ Sbjct: 123 R--VDTVELAQVFYPT 136 >gi|253800757|ref|YP_003033758.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 1435] gi|289555976|ref|ZP_06445186.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 605] gi|297636389|ref|ZP_06954169.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN 4207] gi|297733383|ref|ZP_06962501.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN R506] gi|313660714|ref|ZP_07817594.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN V2475] gi|253322260|gb|ACT26863.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 1435] gi|289440608|gb|EFD23101.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 605] gi|328460485|gb|AEB05908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 4207] Length = 329 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 8/123 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P K P +HG+T L Sbjct: 18 VIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP---KVDPGPTHVHGLTAAML 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 +P F+ I E D + +AHN FD F+ AE + + P+D ++ T+ + Sbjct: 75 DGQPQFADIAGEVVDVLRGRT--LVAHNVAFDYAFLAAEAEIAEAELPVD--FVMCTVEL 130 Query: 130 ARR 132 ARR Sbjct: 131 ARR 133 >gi|318606038|emb|CBY27536.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica Y11] Length = 220 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 27/170 (15%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL+ I+EI +++++D + +N + P+ R S +A+ +H IT+E + Sbjct: 5 VIDTETCGLEGG---IVEIASIDVMDGALSN-PMSDLVSPD-RPISLDAMVIHHITEEMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP + ++ + + ++AHNA FD G + P + I TL +A Sbjct: 60 EGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104 Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175 R +P ++ L RY + ++ + H AL D ++ + + ++M Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152 >gi|312870293|ref|ZP_07730421.1| exonuclease [Lactobacillus oris PB013-T2-3] gi|311094177|gb|EFQ52493.1| exonuclease [Lactobacillus oris PB013-T2-3] Length = 178 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 5/114 (4%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI + + D P+F ++ F+ + IAHN +FD G + + L+ +P Sbjct: 50 VQIHGIHERDVADAPTFPEVWEHIKGFYTPEKLV-IAHNNRFDNGVLKSTLEHYGIEP-P 107 Query: 120 PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + +DT+ +RR P N LN++C I + H H AL D+ +++ + Sbjct: 108 AYQTLDTVVSSRRLLPGLSNYKLNTVCDALNIDLHHH--HNALDDAQACANILL 159 >gi|255316545|ref|ZP_05358128.1| DNA polymerase III PolC [Clostridium difficile QCD-76w55] Length = 285 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETT K RI+EIGAV++ + + F + P K + +L IT++ Sbjct: 18 VVVDIETTAFSIQKGGRILEIGAVKIKN-GEIVDNFSTLVNPE-LKIPKKITELTKITND 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG-FINAELQRINKDPLDPSRIIDTL 127 +KD P ++ +F +F ++ + +AHNA FD F+ L I +++DT+ Sbjct: 76 MVKDAPYIGNVLQKFNEFISD--SVIVAHNASFDWDRFLKPALATIGIKS--SHKVMDTV 131 Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S+++ P ++ L LC + + H A+ D+ + ++K+ Sbjct: 132 SLSKFTFPDKKKHTLIDLCSYLEVPLEKN--HRAIDDAIATAKCFLKL 177 >gi|50120858|ref|YP_050025.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043] gi|81827142|sp|Q6D5W0|RNT_ERWCT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|49611384|emb|CAG74831.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043] Length = 223 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++E+ AV L +D + + + T + P G P AL +G Sbjct: 20 VVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEPAALAFNG 79 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + IF ++ A +AHNA FD F+ A +R + Sbjct: 80 IDPTNPLRGAVSEYDALHEIFKVVRKGIKDRGCNRAIIVAHNATFDHSFMAAAAERCSLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C GI H AL D++ + ++ ++ Sbjct: 140 RNPFHPFATFDTAALSGLV--LGQTVLAKACITAGIAFDSSQAHSALYDTNQTALLFCEL 197 Query: 175 M 175 + Sbjct: 198 V 198 >gi|254448582|ref|ZP_05062041.1| ribonuclease T [gamma proteobacterium HTCC5015] gi|198261771|gb|EDY86057.1| ribonuclease T [gamma proteobacterium HTCC5015] Length = 212 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 31/188 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET G +++ D ++EI AV + +D+ + T + P G P++L++ G Sbjct: 17 VVIDIETGGFNAQTDAVLEIAAVMIDMDHQGRLRVGETISTHVEPFQGANIEPKSLEITG 76 Query: 65 I---------------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 I D+ L KP S++ + A + HN+ FD+ F+NA Sbjct: 77 IDLNNPLRGAVSEREALDKLL--KPIRSAVKNH-----GCTRAILVGHNSFFDLNFLNAA 129 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + R ++P DT++IA + + L C+ G+ ++ H A+ D+ Sbjct: 130 IDRCTYKRNPFHAFSSFDTVTIAGLAY--GQTVLARACEAAGLGWNNSEAHSAVYDAEQT 187 Query: 168 SDVYIKMM 175 + ++ K++ Sbjct: 188 ARLFCKVI 195 >gi|154249517|ref|YP_001410342.1| DNA polymerase III, epsilon subunit [Fervidobacterium nodosum Rt17-B1] gi|154153453|gb|ABS60685.1| DNA polymerase III, epsilon subunit [Fervidobacterium nodosum Rt17-B1] Length = 188 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 13 DIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIETTG+D S DRIIEI + + L A +H I++ ++ Sbjct: 11 DIETTGIDPSMGDRIIEIAIIPIYKGKIVKEWIYTSLVNPKVNIQAYAQSVHKISNSDIE 70 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + P I S + ++ + HNAKFD+ F++ + + + PLD IDTL I++ Sbjct: 71 NAPELDEIISVVRKY--SKDTIMVFHNAKFDLTFLDYAAKEVGQLPLD-VYYIDTLDISK 127 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQIN 182 + R L SL + + ISH+ H A D+ + ++V+I+ M+G I+ Sbjct: 128 AVY-GRRRKLESLAQE--MKISHKVTHRAYDDAFVTANVFIRFFDMLGWEVIH 177 >gi|325066430|ref|ZP_08125103.1| DNA polymerase III subunit epsilon-like protein [Actinomyces oris K20] Length = 259 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 14/159 (8%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEA 59 M + V D+ETTGL D I+E+ V + ++ + P G P Sbjct: 34 MAEAAGVGYAVVDLETTGLSPTTDSILEVALVLTDAAGRVEHSWSTLIDPGVGVDVGPT- 92 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HG+ E L P F + + +AHNA+FDVGF+ L + LD Sbjct: 93 -HIHGLVAEELIGAPGFDEVADLL--VADLAGRPVVAHNARFDVGFLTQALG--TRGLLD 147 Query: 120 -PSRIIDTLSIARRKH----PSSRNDLNSLCKRYGITIS 153 +R+ ++ H PS R L + C+ G+ I Sbjct: 148 RGARVPRVCTMEWAHHFMTTPSRR--LTTCCEVAGVEIG 184 >gi|319760500|ref|YP_004124438.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF] gi|318039214|gb|ADV33764.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF] Length = 221 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 22/186 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----GRKNSPEALKLHG 64 +V D+ET GL++ D ++EI + L S L N G P AL L+ Sbjct: 21 VVIDVETAGLNANTDALLEIATITLKMDSDGWLCMDNVLHFNIKSFPGANLHPSALALNK 80 Query: 65 I-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQRI--- 113 I + L+ + +E + N A +AHNA FD FI A ++RI Sbjct: 81 IDPNNPLRFAVTEQEALNEIFKMVNMGIKIHECHKAIIVAHNASFDHSFIMAAIERISDT 140 Query: 114 ----NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 N +P P DT +++ + L + CK GI H AL D+ + Sbjct: 141 NNNMNVNPFHPFVTFDTAALSGLVF--GQTVLATACKHAGIVFDKSKAHSALYDTEKTAI 198 Query: 170 VYIKMM 175 ++ +++ Sbjct: 199 LFCELV 204 >gi|332162002|ref|YP_004298579.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666232|gb|ADZ42876.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 220 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 27/170 (15%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL+ I+EI +++++D + +N + P+ R S +A+ +H IT+E + Sbjct: 5 VIDTETCGLEGG---IVEIASIDVMDGALSN-PMSDLVSPD-RPISLDAMVIHHITEEMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP + ++ + + ++AHNA FD G + P + I TL +A Sbjct: 60 EGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104 Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175 R +P ++ L RY + ++ + H AL D ++ + + ++M Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152 >gi|317178251|dbj|BAJ56040.1| DNA polymerase III subunit epsilon [Helicobacter pylori F16] Length = 287 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GI E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGIAYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS E F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSLCKRYG--ITISHRSKHGAL 161 R S R L+ L + G I +SHR+ AL Sbjct: 190 RAILSMRYSLSFLKELLGFSIEVSHRAYADAL 221 >gi|146310438|ref|YP_001175512.1| exodeoxyribonuclease X [Enterobacter sp. 638] gi|145317314|gb|ABP59461.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638] Length = 223 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 23/169 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTGL+ + ++E+ +V+++D N L G EA+ +H IT++ + Sbjct: 4 VIDTETTGLEGGPETVVELASVDIVDGVICNPMSD--LVKPGVAIGFEAMAIHHITEDMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P S + + ++AHNAKFD ++L +I+ + I T +A Sbjct: 62 EGAPLLSEVIGRYLG-----ADAYVAHNAKFD----KSKLPQID------APWICTAKLA 106 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHG-----ALLDSHLLSDVYIKM 174 R P ++ N RY + + G AL D ++ +++ + M Sbjct: 107 RSLLPEHKSHSNQYL-RYSLGLKPEVPEGLYAHRALYDCYVTAELLLYM 154 >gi|259501466|ref|ZP_05744368.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners DSM 13335] gi|302191565|ref|ZP_07267819.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus iners AB-1] gi|309803902|ref|ZP_07697986.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 11V1-d] gi|309804516|ref|ZP_07698582.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] gi|309806946|ref|ZP_07700929.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] gi|309808365|ref|ZP_07702268.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] gi|309809203|ref|ZP_07703075.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] gi|325912750|ref|ZP_08175130.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] gi|329919994|ref|ZP_08276872.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 1401G] gi|259167134|gb|EEW51629.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners DSM 13335] gi|308163997|gb|EFO66260.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 11V1-d] gi|308166169|gb|EFO68386.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] gi|308166670|gb|EFO68866.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] gi|308168428|gb|EFO70543.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] gi|308170503|gb|EFO72524.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] gi|325477964|gb|EGC81096.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] gi|328936765|gb|EGG33205.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 1401G] Length = 177 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +K+HGIT +KD P+ ++ + F + +AHNA+FD + L++ N + Sbjct: 50 IKIHGITANDVKDAPTMDEVWPKIRLLF-QPGMLVVAHNARFDCNVMKKSLKKYNI--AE 106 Query: 120 PSRI-IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK--MM 175 P + IDTL+ +R P+ +N L+++ + I + H H AL DS +++ IK Sbjct: 107 PHYLTIDTLATSRALMPNLKNYRLDTVSNQLNIDLWHH--HNALSDSEACAEILIKQNQQ 164 Query: 176 VGGSQI 181 G QI Sbjct: 165 FGDEQI 170 >gi|307702203|ref|ZP_07639163.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis ATCC 35037] gi|307624216|gb|EFO03193.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis ATCC 35037] Length = 829 Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 20/173 (11%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D T+ + P+ +S +L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIENGEIIDQYATD------VNPHEPLDS-HIKEL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 G+TD+ L P FS + + ++ ++ ++AHN +FD + AE L R Sbjct: 59 TGLTDQRLAVAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEGYELRTPR 115 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P + +L LC+ GI + H H AL D+ +++ + M Sbjct: 116 -VDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYM 165 >gi|269837944|ref|YP_003320172.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] gi|269787207|gb|ACZ39350.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] Length = 197 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 21/190 (11%) Query: 1 MIRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+R+ R ++F D ETTGLD + + I+EI V+ ++ + P R PE Sbjct: 18 MLRR---RDVLFLDTETTGLDGQAE-IVEIAVVD----AQGTVLLDTLVRPL-RPIPPEV 68 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGITD + P + + +E F E+ + +NA FD I Q+ P Sbjct: 69 QAIHGITDRMVAGAPRWPEVHAELVRLFRERPRA-VVYNAAFDRRVIAQTAQQHCLPPPT 127 Query: 120 P---SRIIDTLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++ + A +HP + + L+ GI R H AL D+ + V Sbjct: 128 AEWHCAMLRYAAYAGERHPVTGKYRWHRLDRAAAALGIP---RPTHRALGDALVCRGVVA 184 Query: 173 KMMVGGSQIN 182 M G ++ Sbjct: 185 AMAGLGGRLG 194 >gi|298209279|ref|YP_003717458.1| putative DNA polymerase III epsilon chain [Croceibacter atlanticus HTCC2559] gi|83849206|gb|EAP87075.1| putative DNA polymerase III epsilon chain [Croceibacter atlanticus HTCC2559] Length = 258 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG++ D+I+EI +++ + N+ + +L R E +HGITDE + Sbjct: 12 FDLETTGVNVAKDKIVEISILKV--FPNGNKESKTWLVNPERPIPAETTAVHGITDEKVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 ++P+F + S ++ + N +FD+ + EL R + D Sbjct: 70 NEPTFKELSSSIYEMIKGCDLGGFNSN-RFDIPLLAEELLRADID 113 >gi|325978714|ref|YP_004288430.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178642|emb|CBZ48686.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 827 Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 7/136 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + + D+E TG + + II++G V +++ + +T+Q + P+ S + Sbjct: 1 MMQVNSQKYAIVDLEATGAHAMAE-IIQVGIV-IIENDEIVKTYQTDVNPH-EALSEHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + E + ++ ++AHN KFD + +L + P Sbjct: 58 NLTGITDEQLAKAPDFSQVAQEVFSLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS 136 +DT+ +A+ +P+ Sbjct: 116 R--VDTVELAQVFYPT 129 >gi|306831779|ref|ZP_07464935.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425977|gb|EFM29093.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 827 Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 7/136 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + + D+E TG + + II++G V +++ + +T+Q + P+ S + Sbjct: 1 MMQVNSQKYAIVDLEATGAHAMAE-IIQVGIV-IIENDEIVKTYQTDVNPH-EALSEHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + E + ++ ++AHN KFD + +L + P Sbjct: 58 NLTGITDEQLAKAPDFSQVAQEVFSLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS 136 +DT+ +A+ +P+ Sbjct: 116 R--VDTVELAQVFYPT 129 >gi|119471121|ref|ZP_01613653.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7] gi|119445777|gb|EAW27059.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7] Length = 745 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 6/102 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 V DIETTG +R+ EIG V++ + K T+ + P +++ P + KL GI+D Sbjct: 581 VVDIETTGGLKGGNRVTEIGIVKV-QHGKVIDTWTTLINP--QRHIPSFITKLTGISDGM 637 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + + P F+ I D + ++AHN FD GFI E + Sbjct: 638 VYNAPVFADIAQPLLD--KLAGSIFVAHNVNFDYGFIKKECE 677 >gi|322392254|ref|ZP_08065715.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus peroris ATCC 700780] gi|321144789|gb|EFX40189.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus peroris ATCC 700780] Length = 823 Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 10/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +S +L G+TD Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIED-GEIVEQYATDVNPHEHLDS-HIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + ++ ++ ++AHN +FD + AE L R IDT+ Sbjct: 64 KRLAKAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLL-AEFLFFEGYELRTPR-IDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A+ +P + +L LC+ GI + H AL D+ +++++ M Sbjct: 120 ELAQVFYPQLEKYNLGILCQELGIPLEQ--AHTALSDAQATAELFLCM 165 >gi|309801335|ref|ZP_07695464.1| exonuclease [Bifidobacterium dentium JCVIHMP022] gi|308222224|gb|EFO78507.1| exonuclease [Bifidobacterium dentium JCVIHMP022] Length = 187 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 10/107 (9%) Query: 10 IVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEAL-KLHGIT 66 ++ D ETTGL + IIEIGA+ + ++ R F+ + P ++ PE + +L GI+ Sbjct: 1 MMLDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDP--QRPLPEFISRLTGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINA 108 D L++KP+ + F + ++ + IAHNA+FD+GF++A Sbjct: 59 DGMLRNKPTADAAMLRFHQWLDDVWPAGRPLTVIAHNAEFDIGFLDA 105 >gi|119471955|ref|ZP_01614240.1| DNA polymerase III subunit epsilon [Alteromonadales bacterium TW-7] gi|119445213|gb|EAW26504.1| DNA polymerase III subunit epsilon [Alteromonadales bacterium TW-7] Length = 234 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 11/127 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL---DYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65 + D ETTGL+SK D I+ +G V Y K ++ + V R+N S ++ +HGI Sbjct: 46 VALDFETTGLNSKADDIVSVGLVPFTLARIYCKQSKHWVV----QPRRNLSESSIVIHGI 101 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + + P F +I + D + + H A + GF N+ L K+ ++ ++D Sbjct: 102 THNDVDNAPDFDNIIAPLLDALRSKVI--VVHYAAIERGFFNSALLLRLKEHIE-FMVVD 158 Query: 126 TLSIARR 132 T+ + RR Sbjct: 159 TMELERR 165 >gi|239932382|ref|ZP_04689335.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291440749|ref|ZP_06580139.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291343644|gb|EFE70600.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] Length = 241 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 21/158 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ A+ + D T +L G A ++HG+T E L Sbjct: 11 AFDTETTGVDVEADRIVS-AALVVQDAPGTRPRVTDWLVNPGVPVPAAATEVHGLTQEHL 69 Query: 71 KDKPSF-SSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQR---------INKDP 117 + + + + E EQ + NA FD+ ++ EL+R + P Sbjct: 70 QRNGRWPAPVMYEVAQALAEQARVGRPLVVMNAPFDLTLLDRELRRHRASSLSRWFERVP 129 Query: 118 ---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152 LDP R++D RK R L LC YG+ + Sbjct: 130 LLVLDP-RVLDKHLDRYRK---GRRTLTDLCAHYGVPL 163 >gi|167035320|ref|YP_001670551.1| ribonuclease T [Pseudomonas putida GB-1] gi|166861808|gb|ABZ00216.1| ribonuclease T [Pseudomonas putida GB-1] Length = 224 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 29/187 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----------GRKNSPE 58 +V D+ET G +S D ++EI AV + K FL P G Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTIGMDEKG------FLFPEHTYFHRVEPFEGANIEAA 85 Query: 59 ALKLHGI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAEL 110 AL+ GI D L+ S S ++ + + + A + HN+ FD+GF+NA + Sbjct: 86 ALEFTGIKLDHPLRMAVSEESALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAV 145 Query: 111 QR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 R + ++P P DT ++A + + L C+ I R H A D+ + Sbjct: 146 ARNDLKRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTA 203 Query: 169 DVYIKMM 175 +++ ++ Sbjct: 204 ELFCGIV 210 >gi|21684666|gb|AAM09078.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps] Length = 175 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A +HG+ DEFL +P+F +I F A + HN FD+ F++A L P Sbjct: 25 AQAVHGLRDEFLATQPTFGAIAQRLLYFLC--GAVLVGHNLTFDLNFLDAGLVSAGFMPA 82 Query: 119 D--PSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150 + +IDT+ ++ R L+ LC R G+ Sbjct: 83 ARYCAGVIDTMLHLAQRGSRRRFSLDDLCDRLGV 116 >gi|238758483|ref|ZP_04619660.1| Exodeoxyribonuclease 10 [Yersinia aldovae ATCC 35236] gi|238703387|gb|EEP95927.1| Exodeoxyribonuclease 10 [Yersinia aldovae ATCC 35236] Length = 187 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 27/170 (15%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL+ I+E+ +++++D N + P+ R S +A+ +H IT+E + Sbjct: 5 VIDTETCGLEGG---IVEVASIDVVD-GVLNNPMSDLISPD-RPISIDAMVIHHITEEMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP + ++ + + ++AHNA FD G + P + I TL +A Sbjct: 60 EGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104 Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175 R +P ++ L RY + ++ + H AL D ++ + + ++M Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152 >gi|229119030|ref|ZP_04248372.1| exonuclease [Bacillus cereus Rock1-3] gi|228664421|gb|EEL19920.1| exonuclease [Bacillus cereus Rock1-3] Length = 240 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 10/100 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 ++ D ETTGL + D+IIEI ++L N + + N P EA +HGIT+E Sbjct: 85 VILDTETTGLTLR-DQIIEICVIDLTGKILLNSLVKPTI------NIPAEAASIHGITNE 137 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 + D PS+ I+ + + + +NA+FD+G I + Sbjct: 138 MVHDAPSWIEIYIKLCEV--TAGKTLLIYNAEFDLGMIES 175 >gi|311894879|dbj|BAJ27287.1| putative exonuclease [Kitasatospora setae KM-6054] Length = 257 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 23/158 (14%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTG+D + DRI+ A+ + T + +L G A +HGI+DE ++ Sbjct: 15 FDTETTGVDVERDRIVS-AALVVQSAPAGTATVRTWLADPGVPIPESARAVHGISDERVR 73 Query: 72 --DKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDP--------- 117 +P ++ E EQ + NA +D+ ++ EL+R Sbjct: 74 AHGRPP-RAVALEVARALAEQARAGVPLVVMNAPYDLTLLDRELRRHRAGSLAEALDGAE 132 Query: 118 ---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152 LDP R++D + RK R L LC YG+ + Sbjct: 133 LLVLDP-RVLDKQADRYRK---GRRTLTDLCAHYGVAL 166 >gi|224825206|ref|ZP_03698312.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224602877|gb|EEG09054.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 212 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 5/109 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTGL R EI AV LL+ + FQ + G + P+ +L GI+ Sbjct: 12 RVAVIDFETTGLSPGIGCRATEI-AVVLLENGRVAGRFQSLM-NAGVRVPPDIERLTGIS 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 + LK P ++ E +F + +AHNA FD F + EL + + Sbjct: 70 NAMLKAAPPADAVMREAAEFVG--DTPLVAHNAAFDRKFWDYELGQFGR 116 >gi|307706367|ref|ZP_07643179.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK321] gi|307618285|gb|EFN97440.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK321] Length = 816 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 30/176 (17%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLVQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 112 RNPR--VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|295689870|ref|YP_003593563.1| exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC 21756] gi|295431773|gb|ADG10945.1| Exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC 21756] Length = 298 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 65/168 (38%), Gaps = 17/168 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV------FLCPNGRKNSPEALK 61 + IV D+ETTGLD D IIE G V Y R V P+G P+ K Sbjct: 43 QGIVLDLETTGLDPAKDEIIEFGLVPFT-YDAGGRIVAVGEPFSRLRQPSG-PIPPDVTK 100 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD + + + + F D A IAHNA FD F A + P S Sbjct: 101 LTGLTDAMVAGQVVDPAEVATFID----GAALIIAHNAGFDRRFAEAFCPAFAQKPWACS 156 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYG-ITISHRSKHGALLDSHLLS 168 I + H L L YG HR+ H L +L+ Sbjct: 157 YT----QIDWQAHGHESGKLAFLACAYGFFHDGHRAHHDCLATLEILA 200 >gi|312978151|ref|ZP_07789895.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus CTV-05] gi|310894869|gb|EFQ43939.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus CTV-05] Length = 926 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 13/170 (7%) Query: 11 VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L GI D+ Sbjct: 12 VVDLETTGTQRENGHHIIQFGCA-IIKNRKVVKTYSFLINPH-REIPQSVVNLTGIHDQD 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + F + QN ++AHN FD+ F+N EL + + L ++ IDT+ + Sbjct: 70 VAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH----LLSDVYIKM 174 A+ P+ L+ L + G I H H A D++ LL +++ K+ Sbjct: 127 AKIAFPTFPSYKLSDLTTQLG--IKHLDPHKADSDAYGTAVLLLEIFNKL 174 >gi|282858994|ref|ZP_06268131.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010] gi|282588223|gb|EFB93391.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010] Length = 894 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 22/162 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-------GRKNSPEALKL 62 +VFD ETTGLD D IIEI A+++ + +++ + G K +P Sbjct: 513 VVFDTETTGLDVFTDDIIEISAIKIKEGKIVGEPLDLYIYTDKPILQKLGTKENPLYEIY 572 Query: 63 HG--ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD- 119 H + E LK + + F EF D N+ I HN +D ++ L+R D +D Sbjct: 573 HKKLASGELLKANDALNK-FIEFVD-----NSTLIGHNINYDYHILDNCLKRYANDCMDN 626 Query: 120 -PSRIIDTLSIARRKHPSSRN-DLNSLCKRY---GITISHRS 156 + D+L + R PS R+ L L +R+ GI SH+S Sbjct: 627 HSYKYFDSLKLIRLLEPSLRSYKLEYLLERFQLEGIN-SHQS 667 >gi|146312061|ref|YP_001177135.1| exodeoxyribonuclease X [Enterobacter sp. 638] gi|145318937|gb|ABP61084.1| Exodeoxyribonuclease X [Enterobacter sp. 638] Length = 220 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET L I+E+ +V++++ N L R SP+A+ +H IT+ + Sbjct: 4 VIDTETCDLQGG---IVEVASVDVINGQIVNPMSH--LVRPDRPISPQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEEVIPNYYG-----STWYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLNVKTPEGLHHHRALYDCYITAALLIDIM 151 >gi|213029040|ref|ZP_03343487.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 139 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 22/127 (17%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEDVIPLYY------GSEWYVAHNASFDRRVL----------PELPGEWICTMKL 102 Query: 130 ARRKHPS 136 +RR P Sbjct: 103 SRRLWPG 109 >gi|116514018|ref|YP_812924.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093333|gb|ABJ58486.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 930 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 15/170 (8%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG + DRII+ G + D + +T+ + P+ RK L GI + Sbjct: 12 VVDLETTGTRKEEGDRIIQFGCAIVKD-GEVVKTYSFMMNPH-RKIPLAVTNLTGIDQKM 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D+ F + + Q+ ++AHN FD F+N EL + L + +DT+ + Sbjct: 70 VADQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEALT-CKAVDTVEL 126 Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ P+ DL + + I H + H A D++ + + +K++ Sbjct: 127 AKIAFPTLPSYKLRDLTA-----SLEIKHANPHKADSDAYGTAVLLLKII 171 >gi|300775432|ref|ZP_07085294.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC 35910] gi|300506172|gb|EFK37308.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC 35910] Length = 407 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 9/153 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+ G +N+ II+I A+ D K F + P G +P KL IT + + Sbjct: 4 IIDIESNGAGYRNECIIDI-AIYRYDGQKITDQFISLVNPEG-DITPFVQKLTSITPKMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K P F I + QN + HN FD + +R+ D +DT+ +A Sbjct: 62 KTAPKFHEIAKRVIEI--TQNTTLVGHNIDFDYRMLRQSFKRLGYDF--KINTLDTIPLA 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGA 160 ++ P + L L K GI ++ HR++ A Sbjct: 118 KKLIPDEVSYSLGKLVKSLGIPLTNHHRAEGDA 150 >gi|229496202|ref|ZP_04389922.1| exonuclease [Porphyromonas endodontalis ATCC 35406] gi|229316780|gb|EEN82693.1| exonuclease [Porphyromonas endodontalis ATCC 35406] Length = 258 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 13/143 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITD 67 + FDIE+TGL + DRI+EI +++ D + RT ++ N + P E+ +HGITD Sbjct: 10 VFFDIESTGLSPEKDRIVEISLIKVYPDGHEEVRTRRL----NPECHIPEESTAVHGITD 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIID 125 + ++D P+F + Q + +N+ +FDV + E R + + R ID Sbjct: 66 DDVRDCPTFRQVAKSLASMI--QGCDIAGYNSNRFDVPLLGEEFLRADVEVDFSRCRFID 123 Query: 126 TLSIARRKHPSSRNDLNSLCKRY 148 +I H R L + K Y Sbjct: 124 VQTIF---HKMERRTLEAAYKFY 143 >gi|254457641|ref|ZP_05071069.1| exonuclease [Campylobacterales bacterium GD 1] gi|207086433|gb|EDZ63717.1| exonuclease [Campylobacterales bacterium GD 1] Length = 231 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 78/172 (45%), Gaps = 25/172 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D+ETTGL+ + DR+ IG V D NRT L G+K A ++ IT+E Sbjct: 3 IFLDVETTGLE-EIDRVCSIGIVWSED--GENRTIYE-LVNEGKKIPSLASSINHITNEM 58 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLD-PSRIID 125 LK KP F SE + + N E + HN KFD L + K + IID Sbjct: 59 LKGKPKFQE--SEAYKLLTQHNNEDTTIVGHNIKFD-------LAMLKKSGFNFIGEIID 109 Query: 126 TLSIARRKHPSSRNDLNSL-CKRYGITISHRSK-----HGALLDSHLLSDVY 171 TL + KH S + SL RY + + K H AL D+ + ++Y Sbjct: 110 TLRVT--KHLVSECEQFSLQFLRYELKLYKEEKELLQAHHALSDATIAKNLY 159 >gi|149912277|ref|ZP_01900850.1| exonuclase [Moritella sp. PE36] gi|149804647|gb|EDM64704.1| exonuclase [Moritella sp. PE36] Length = 234 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 18/173 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL++K D I+ IG VEL + + + + + + + +H ITD Sbjct: 47 LAVDFETTGLNAKQDNILSIGYVELAGSKIRLDSCYHQIVAAHCELVG-DNVTIHNITD- 104 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDT 126 K+K S + S D + + H A+ + F+ A ++ P+ P +IDT Sbjct: 105 --KEKASGRPLASVVEDLLAALAGKTMLVHYAQIEKTFLEQACIKLYGMAPIFP--VIDT 160 Query: 127 LSIARRKH-------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 L++A+++H SR L++L + YG + S H AL D+ +++++ Sbjct: 161 LALAKKRHDRGNQAYAPSRLHLSNLREEYG--LPRYSAHNALNDAIATAELFM 211 >gi|153001188|ref|YP_001366869.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica OS185] gi|151365806|gb|ABS08806.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS185] Length = 228 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 29/186 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D+E TGL+ + D+I+ IG V E+ + Q+ R + ++ +HG Sbjct: 43 VAMDLEMTGLNPQQDQILSIGLVPIERGEIPLARAEQKLVQI------RGSVGQSATIHG 96 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLD-PSR 122 I D L + + W F N+ +AH+A D F+ +L I L P+ Sbjct: 97 ILDNHLVQAVTIEAAMG--W-FINQTYGRVLVAHHAPLDCRFLQQDLLAIYHQALILPA- 152 Query: 123 IIDTLSIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDTL + R R+H + L + +RYG+ I + H AL D+ ++ + M Sbjct: 153 -IDTLMLERHRLLREHSVIKEGSLRLGACRERYGLPIY--TAHSALTDALACGELLLAQM 209 Query: 176 --VGGS 179 +GG+ Sbjct: 210 AAMGGA 215 >gi|119468877|ref|ZP_01611902.1| putative DNA polymerase, exonuclease activity [Alteromonadales bacterium TW-7] gi|119447529|gb|EAW28796.1| putative DNA polymerase, exonuclease activity [Alteromonadales bacterium TW-7] Length = 207 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 16/184 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E TGLDSK I+ + V + + Q F+ K+ ++ HGI+ Sbjct: 24 RYLVIDLELTGLDSKQHEIVSVAWVVIDNQCIKMSESQHFI-NKDVKSLEQSPVFHGIST 82 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + S SI F++ + HNA D GF+ L+ P IIDTL Sbjct: 83 DSVAQGQSLQSILMSLSAHFSD--CILVFHNAMLDWGFLKLALKNAGVTQ-RPKLIIDTL 139 Query: 128 SIARRKHPSSRND-------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I +++ +D LN RY + H H AL D+ +++ ++ Q Sbjct: 140 QIEKKRLLQHASDIKLDDLTLNECRNRYDLPSYH--CHHALTDAQATAEL---LLAQCHQ 194 Query: 181 INFG 184 I G Sbjct: 195 IGAG 198 >gi|149179899|ref|ZP_01858404.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1] gi|148852091|gb|EDL66236.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1] Length = 245 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 90/173 (52%), Gaps = 18/173 (10%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVEL-----LDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +FD+ETTG + D I+ IGA+++ LD +TF + P + S E + G Sbjct: 65 IFDLETTGFFPEIGDEIVSIGAIKMQGNKILD----QKTFYEVINPL-QNVSLETKRFTG 119 Query: 65 IT-DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + +F+K K + +F +F + +AH A FD+ F+ +++ + +P Sbjct: 120 LRRTDFIKAK-TLPVGLKDFLEFC--KGTILVAHPASFDINFLQKRIRKWDLPSFEPEY- 175 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ID+ ++A+ + L+ L K++ IS +++H AL D+ + ++V+ ++++ Sbjct: 176 IDSYALAKELLNEQKCYLDDLVKKF--QISEKTRHHALNDAIMTAEVFQELLI 226 >gi|146302714|ref|YP_001197305.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] gi|146157132|gb|ABQ07986.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] Length = 256 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 27/117 (23%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS------------PEA 59 FD+ETTG+D DRI+EI F+VF PNG K S P+ Sbjct: 12 FDLETTGIDIGKDRIVEIS------------IFKVF--PNGNKESKTWLVNPTIPIPPQT 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 +HGITDE + ++P+F+ + + + + ++ +FD+ + EL R D Sbjct: 58 TAVHGITDEKVANEPTFAELAPLVHNMIKDSDLAGF-NSDRFDIPLLAEELLRAGVD 113 >gi|120436594|ref|YP_862280.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803] gi|117578744|emb|CAL67213.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803] Length = 258 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 10/161 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG + DRI+EI +++ + N+ +L R+ E + +HGIT+E + Sbjct: 12 FDLETTGTNISKDRIVEIAVLKV--FPNGNKESHTWLVNPEREIPAEVIAIHGITNEKVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 ++P+F + + D + + +N+ +FD+ + EL R + D + +D +I Sbjct: 70 NEPTFKELAQKIHDLI--KGCDLGGYNSNRFDIPLLVEELLRADIDFEMKNVVAVDVQTI 127 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +K + S ++ HGA D+ +V Sbjct: 128 FHKKEQRTL----SAAYQFYCGKELEGAHGAEADTEATYEV 164 >gi|116333325|ref|YP_794852.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus brevis ATCC 367] gi|116098672|gb|ABJ63821.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus brevis ATCC 367] Length = 178 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 9/116 (7%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI + + + P+F ++ FF +++ IAHNA FD G + + L+ N L Sbjct: 50 VQIHGIHERDVANAPTFPEVWQHVAPFF-QRDRLVIAHNAPFDNGVLRSSLEHYN---LP 105 Query: 120 PSR--IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P+R +DT+ +R+ P N L+++C I + H H AL DS +++ + Sbjct: 106 PARYLTLDTVKTSRKFFPEFPNHKLDTVCDELDIDLHHH--HNALDDSLACANILL 159 >gi|73662206|ref|YP_300987.1| exonuclease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494721|dbj|BAE18042.1| putative exonuclease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 184 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 9/155 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ET + K I +G V+++++ T +F + PN S + + +H I E Sbjct: 7 IALDFETA--NGKRTSICAVGMVKVVNHQIT-ESFYTLVNPNDYF-SQQNIAVHSIHPEQ 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D P+F +++ F + +AHNA FD+ ++ + D + + +L + Sbjct: 63 VEDAPTFQTVYPYMLQFIGD--LPVVAHNAAFDMNVLHESISAFGFDTPNMTYFC-SLQL 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +RR + R LN + + Y + H AL D+ Sbjct: 120 SRRTVENHRYGLNYMMQYYNLDF--HGHHDALNDA 152 >gi|27383129|ref|NP_774658.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] gi|27356303|dbj|BAC53283.1| blr8018 [Bradyrhizobium japonicum USDA 110] Length = 298 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 49/102 (48%), Gaps = 12/102 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPNGRKNSPEALKLH 63 I+ D ETTGLD + D IIE+G V+ DY+ R TF F P+ PE + Sbjct: 45 ILLDTETTGLDHRKDEIIELGMVK-FDYTPDGRIVGVRDTFAAFDEPSA-PIPPEITAIT 102 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 GITDE + + + S F D IAHN+ FD F Sbjct: 103 GITDEMVAGQRIDDAAVSAFVD----DAVITIAHNSGFDRKF 140 >gi|325297417|ref|YP_004257334.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] gi|324316970|gb|ADY34861.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] Length = 183 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 7/164 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ET K I E G + ++ K T + P G S +++HGI Sbjct: 7 IAIDFETA--TRKRASICEAG-ICVVRNGKVAETRSWLIRPEGNYYSYWNMQIHGIRPSD 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P F I+++ ++ E +AHNA FD+G I LQ + D + +L Sbjct: 64 TENAPEFPEIWTKITEYLGECPV-LVAHNAIFDIGCIRHSLQFYHIKKPDITYYC-SLRA 121 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 AR+ + N L+ LC ++ I +R H A D+ + + ++++ Sbjct: 122 ARKLYNFDCNKLDYLCDQF--EIPYRLHHRAGDDAEMCARLFLR 163 >gi|332885444|gb|EGK05693.1| hypothetical protein HMPREF9456_02495 [Dysgonomonas mossii DSM 22836] Length = 256 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 13/112 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 I FD+ETTG D+ DRI+E+ +++ + KT R P G A +HGI Sbjct: 10 IFFDLETTGTDTVKDRIVELSYLKVYPNGKEEMKTRRINPEMPIPAG------ATAIHGI 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD 116 +DE +KD P+F I D + + N ++FD+ + E R + D Sbjct: 64 SDEDVKDCPTFKQIAKSLAD--QMEGCDLAGFNSSRFDIPLLAEEFLRADVD 113 >gi|302334813|ref|YP_003800020.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084] gi|301318653|gb|ADK67140.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084] Length = 1001 Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 12/169 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL ++ +IEI A + R FQ F+ P G PE L I+D Sbjct: 58 VVLDTETTGLSFRDCELIEIAAARIRGGVVEER-FQTFVHPMG-PIPPEISALTHISDLD 115 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D PS + +F +AHNA FD F+ E +D D IDTL++ Sbjct: 116 VTDAPSAVDAVAALSEFVAGDPV--LAHNATFDRTFV--ESVPGGRDVSD--NWIDTLAL 169 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +R P S + L + + +G + H A D L+ ++ M+V Sbjct: 170 SRIALPRLSSHRLADMARAFG---CDSATHRATADVEALAGMWRIMLVA 215 >gi|254507936|ref|ZP_05120065.1| exonuclease, RNase T and DNA polymerase III [Vibrio parahaemolyticus 16] gi|219549172|gb|EED26168.1| exonuclease, RNase T and DNA polymerase III [Vibrio parahaemolyticus 16] Length = 239 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 13/185 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLDS+ D II IG V L+ N+ + P ++ +++ +HGIT Sbjct: 50 LAMDFETTGLDSEQDDIITIGTVPFTLNRVLINQAKHWTVRPR-KQLEEDSVIIHGITHS 108 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIIDTL 127 + D P S +F+E + H + + F N A L RIN+ P ++DT+ Sbjct: 109 DVLDAPDLSEVFAEI--LAQMHGRIMVVHYQRIEREFFNRALLTRINEGIEFP--VVDTM 164 Query: 128 SI-ARRKHPSSRNDLNSLCKRYGITI---SHRSKHG--ALLDSHLLSDVYIKMMVGGSQI 181 + + S+ LN L R ++ + RS++G H L+D + +QI Sbjct: 165 QLETLVQQKSNGGLLNRLKGRKPASVRLSASRSRYGLPQYTPHHALTDAVATAELLQAQI 224 Query: 182 NFGFK 186 + ++ Sbjct: 225 AYHYE 229 >gi|300933650|ref|ZP_07148906.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM 45100] Length = 226 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 13/149 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG D K RI+ + + R Q L G + +A +HGIT E+ + Sbjct: 16 FDLETTGTDPKTCRIVTSAMISI---EGRERKDQELLADPGVEIPEQATAVHGITTEYAR 72 Query: 72 DKPS-FSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + S + ++ + E + A + +NA +D+ + A D L + D L Sbjct: 73 ENGSPHDEVLAQTIETIREAWQRGATLVVYNAPYDLSVLRALEPSFTVDGL----VFDPL 128 Query: 128 SIARRKHP--SSRNDLNSLCKRYGITISH 154 + R P + L ++C+ YGI +++ Sbjct: 129 VVDRAMDPYRKGKRRLENVCEHYGIELTN 157 >gi|78777984|ref|YP_394299.1| exonuclease [Sulfurimonas denitrificans DSM 1251] gi|78498524|gb|ABB45064.1| Exonuclease [Sulfurimonas denitrificans DSM 1251] Length = 247 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 15/131 (11%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I+ D ETTG+ + DR+I++G + L + Q S A++ HGIT Sbjct: 4 RYIILDTETTGI-GEEDRVIQLGFIVL---GEREIEVQNEFFSTSVPISFGAMETHGITP 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRII 124 E L KP S + NE N++ I HNAKFD+ + E + R+I Sbjct: 60 EMLDGKPLCKD--STSYRRLNELNSDENYLIIHNAKFDIDMLQKEGFKTQ------MRVI 111 Query: 125 DTLSIARRKHP 135 DTL +A+ P Sbjct: 112 DTLRVAKHLLP 122 >gi|327440671|dbj|BAK17036.1| DNA polymerase III, epsilon subunit [Solibacillus silvestris StLB046] Length = 353 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 107/232 (46%), Gaps = 32/232 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDE 68 I DIE + K IIEIGAV+ L T TF + P +K + KL GIT E Sbjct: 8 ISIDIEAALIRGKQ-YIIEIGAVKWLP-DGTTETFTQLIQPYKFKKLNAHIQKLTGITTE 65 Query: 69 FLKDKPSFSSIFSEF--WDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPSRII 124 L D PSF F++F W +Q+ ++ +FD + EL R I D L P +I Sbjct: 66 QLVDAPSFKEAFTKFKRW---CKQDYVFLTF-GEFDRKVLEEELSRNYIKNDCLYP--MI 119 Query: 125 D-----TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D ++ ++ PS L L + G + + ++H AL D+ L +++K V G Sbjct: 120 DFQQKYMIANGLKEQPS----LGGLMAQLG--LENETQHRALADAASLLSIFVK--VDGD 171 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 +I +TN+ + N +L+ L T +++++ TIQ++ Sbjct: 172 KIIEQQQTNDFILL------LTNFKMLETTYELVISATNCKIEDNGITIQSM 217 >gi|330811344|ref|YP_004355806.1| ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379452|gb|AEA70802.1| Ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 225 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A + +D + + T+ + P G AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPDHTYFFRVEPFEGANVEAAALEFTG 92 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ ++ + + IF A + HN+ FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 152 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ I R H A D+ ++++ + Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAADIDFDGREAHSARYDTEKTAELFCGI 210 Query: 175 M 175 + Sbjct: 211 V 211 >gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1430 Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FDIETTGL+ D I+E+ + ++ N TF + P R +P + +H IT+ Sbjct: 764 RIVFFDIETTGLNPSTDAIVEVAMFDPIE----NSTFHTLVNPQ-RSITPRTVGIHHITN 818 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 ++D P+ + + A + H VG Sbjct: 819 AMVRDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVG 855 >gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5] gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5] Length = 1430 Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FDIETTGL+ D I+E+ + ++ N TF + P R +P + +H IT+ Sbjct: 764 RIVFFDIETTGLNPSTDAIVEVAMFDPIE----NSTFHTLVNPQ-RSITPRTVGIHHITN 818 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 ++D P+ + + A + H VG Sbjct: 819 AMVRDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVG 855 >gi|325956898|ref|YP_004292310.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC] gi|325333463|gb|ADZ07371.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC] gi|327183677|gb|AEA32124.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1118] Length = 926 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 11 VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L GI++ Sbjct: 12 VVDLETTGTQRENGHHIIQFGCA-IIKNLKVVKTYSFMINPH-REIPQSVVNLTGISNGD 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + F + QN ++AHN FD+ F+N EL + D L ++ IDT+ + Sbjct: 70 VQKQKDFDFYAPKIVKIL--QNTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKAIDTVEL 126 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ P+ L+ L + + I H + H A D++ + + IK++ Sbjct: 127 AKIAFPTLPSYKLSDLTAQ--LEIKHLNPHKADSDAYGTAILLIKII 171 >gi|319955723|ref|YP_004166990.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM 14237] gi|319424383|gb|ADV51492.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM 14237] Length = 456 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 7/148 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI A+ D + F + P ++ P + L GIT++ L Sbjct: 4 ILDIETTGGKYNEEGITEI-AIHKFDGHQVVDQFISLVNPE-KEIQPFVVNLTGITNKML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P F + + + IAHNA+FD + E +R+ + + I T+ +A Sbjct: 62 VTAPKFYEVAKRIVEI--TEGTVLIAHNAQFDYRILRTEFRRLGFNF--ERKTICTVELA 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157 ++ P + + L L + GI +S R + Sbjct: 118 QKLLPEAESYSLGKLVRSLGIPVSDRHR 145 >gi|260101291|ref|ZP_05751528.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075] gi|260084876|gb|EEW68996.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075] Length = 929 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 15/170 (8%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG K II+ G ++ K +T+ + P+ R+ + L GI +E Sbjct: 12 VVDLETTGTQREKGHHIIQFGCA-IIKNMKVVKTYSFMINPH-REIPQSVVNLTGIHNED 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ K FS + + + ++AHN FD+ F+N EL + + L ++ IDT+ + Sbjct: 70 VQGKDDFSVYAPKIIEIL--KGTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126 Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ P+ +DL + K I H + H A D++ + + IK++ Sbjct: 127 AKIAFPTLPSYKLSDLTAQLK-----IKHLNPHKADSDAYGTAVLLIKII 171 >gi|258648468|ref|ZP_05735937.1| exonuclease [Prevotella tannerae ATCC 51259] gi|260851225|gb|EEX71094.1| exonuclease [Prevotella tannerae ATCC 51259] Length = 256 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 35/185 (18%) Query: 1 MIRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---- 55 M + N R I+F DIE TGL DRI+E+ +++ P+GR+ Sbjct: 1 MTQLNLTRPIIFFDIEATGLQIARDRIVELSYIKVF--------------PDGREESKTL 46 Query: 56 --------SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFI 106 S EA ++GI DE + D P+F E F Q+ + N+ FDV + Sbjct: 47 RFNPEMHISAEATAVNGIKDEDVADCPTFKEKSGELTAIF--QSCDLAGFNSNVFDVPML 104 Query: 107 NAELQRINKD-PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 E R D + S+++D +I + P RN L + K Y H + H A+ D+ Sbjct: 105 VEEFARAGSDFDITKSKLVDVQTIYHKLEP--RN-LIAAYKFYCNKDLHNA-HTAMADTQ 160 Query: 166 LLSDV 170 +V Sbjct: 161 ATYEV 165 >gi|78484942|ref|YP_390867.1| ribonuclease T [Thiomicrospira crunogena XCL-2] gi|78363228|gb|ABB41193.1| RNAse T [Thiomicrospira crunogena XCL-2] Length = 207 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D + + +IEI V L S + ++T Q + P G + ALK G Sbjct: 17 VVVDVETAGFDPQTNALIEIAIVTLKMNSDGTIERDQTVQANVLPFKGSQLDKSALKFIG 76 Query: 65 ITDE------FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN- 114 + D + +K + F+ E + A + HNA FD+ F+ A R Sbjct: 77 VEDPTHPFRMAVSEKDALEKCFAPIRQLLKETDCSRAILVGHNAFFDLSFVKAAADRCKV 136 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 K P DT+S+A + + L + I + H A D+ +D++ K+ Sbjct: 137 KSPFHEFSTFDTVSLAGLAY--GQTVLAKAVQMAEIEWDNSKAHSAEYDTIKTADLFCKI 194 Query: 175 M 175 + Sbjct: 195 V 195 >gi|330822675|ref|YP_004385978.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601] gi|329308047|gb|AEB82462.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601] Length = 209 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 8/148 (5%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ ++ R E+ A+ L++ + F + G P +L GIT+ Sbjct: 7 VIDFETTGMTPAQGARATEV-AIVLMEGERVVDRFASLM-KTGVWIPPFITRLTGITNAM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+ S+ E F +A +AHNA FD F +EL+ D P T+ + Sbjct: 65 VDAAPAAESVMREAARFVG--DAPMVAHNAAFDSRFWQSELRHAGLD--APHPFACTVLL 120 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRS 156 +RR +P + + L L G+ + R+ Sbjct: 121 SRRIYPDAPSHSLGRLTDHLGLPRTGRA 148 >gi|123442082|ref|YP_001006065.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089043|emb|CAL11861.1| putative exodeoxyribonuclease [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 220 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 27/170 (15%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL+ I+EI +++++D + +N + P+ R S +A+ +H IT+E + Sbjct: 5 VIDTETYGLEGG---IVEIASIDVMDGALSN-PMSDLVSPD-RPISLDAMVIHHITEEMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP + ++ + + ++AHNA FD G + P + I TL +A Sbjct: 60 EGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104 Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175 R +P ++ L RY + ++ + H AL D ++ + + ++M Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152 >gi|315038483|ref|YP_004032051.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112] gi|312276616|gb|ADQ59256.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112] Length = 926 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 11 VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L GI++ Sbjct: 12 VVDLETTGTQRENGHHIIQFGCA-IIKNLKVVKTYSFMINPH-REIPQSVVNLTGISNGD 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + F + QN ++AHN FD+ F+N EL + D L ++ IDT+ + Sbjct: 70 VQKQKDFDFYAPKIVKIL--QNTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKAIDTVEL 126 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ P+ L+ L + + I H + H A D++ + + IK++ Sbjct: 127 AKIAFPTLPSYKLSDLTAQ--LEIKHLNPHKADSDAYGTAILLIKII 171 >gi|312872015|ref|ZP_07732095.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2062A-h1] gi|312873705|ref|ZP_07733751.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2052A-d] gi|315653310|ref|ZP_07906232.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners ATCC 55195] gi|325911899|ref|ZP_08174303.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 143-D] gi|311090805|gb|EFQ49203.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2052A-d] gi|311092468|gb|EFQ50832.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2062A-h1] gi|315489235|gb|EFU78875.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners ATCC 55195] gi|325476405|gb|EGC79567.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 143-D] Length = 177 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +K+HGIT +KD P+ ++ + F + +AHNA+FD + L++ N + Sbjct: 50 IKIHGITANDVKDAPTMDEVWPKIRLLF-QPGMLVVAHNARFDCNVMKKSLKKYNI--AE 106 Query: 120 PSRI-IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK--MM 175 P + IDTL+ +R P+ +N L+++ + I + H H AL DS +++ IK Sbjct: 107 PHYLTIDTLATSRALIPNLKNYRLDTVSNQLNIDLWHH--HNALSDSEACAEILIKQNQQ 164 Query: 176 VGGSQI 181 G QI Sbjct: 165 FGDEQI 170 >gi|325275194|ref|ZP_08141161.1| ribonuclease T [Pseudomonas sp. TJI-51] gi|324099681|gb|EGB97560.1| ribonuclease T [Pseudomonas sp. TJI-51] Length = 224 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 29/187 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----------GRKNSPE 58 +V D+ET G +S D ++EI AV + K FL P G Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTIGMDEKG------FLFPEHTYFHRVEPFEGANIEAA 85 Query: 59 ALKLHGI-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAEL 110 AL+ GI D L+ ++ + + IF A + HN+ FD+GF+NA + Sbjct: 86 ALEFTGIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAV 145 Query: 111 QR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 R + ++P P DT ++A + + L C+ I R H A D+ + Sbjct: 146 ARNDVKRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTA 203 Query: 169 DVYIKMM 175 +++ ++ Sbjct: 204 ELFCGIV 210 >gi|295693033|ref|YP_003601643.1| ATP-dependent DNA helicase ding [Lactobacillus crispatus ST1] gi|295031139|emb|CBL50618.1| ATP-dependent DNA helicase DinG [Lactobacillus crispatus ST1] Length = 926 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 13/170 (7%) Query: 11 VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L GI D+ Sbjct: 12 VVDLETTGTQRENGHHIIQFGCA-IIKNLKVVKTYSFLINPH-REIPQSVVNLTGIHDQD 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + F + QN ++AHN FD+ F+N EL + + L ++ IDT+ + Sbjct: 70 VAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH----LLSDVYIKM 174 A+ P+ L+ L + G I H H A D++ LL +++ K+ Sbjct: 127 AKIAFPTFPSYKLSDLTTQLG--IKHLDPHKADSDAYGTAVLLLEIFNKL 174 >gi|257466613|ref|ZP_05630924.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563] gi|315917768|ref|ZP_07914008.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563] gi|313691643|gb|EFS28478.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563] Length = 186 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 23/184 (12%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65 M+ + D ETTGL ++ II++ A+ +D + T ++ P + S EAL + Sbjct: 1 MKILYLDTETTGLTYRS-TIIQLAAIVEID-GEIKETINLYCAPFPDSDISEEALSITKF 58 Query: 66 TDE--FLKDKP-----SFSSIFSEFWDFFNEQNA-EWIAHNAKFDVGFINAELQRIN--- 114 T E F D P +F+ I ++ D +N+ + I HN KFD+ + R N Sbjct: 59 TREEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERF 118 Query: 115 -------KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 K+ D L I + + N L +LC+ + I + + H AL D+ Sbjct: 119 IASYIDFKNEFDTLAFTKCLKILGKLPQTENNKLETLCQAFQIPL--ENAHNALADTIAA 176 Query: 168 SDVY 171 D+Y Sbjct: 177 KDLY 180 >gi|307327637|ref|ZP_07606822.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] gi|306886749|gb|EFN17750.1| Exonuclease RNase T and DNA polymerase III [Streptomyces violaceusniger Tu 4113] Length = 254 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 15/155 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE-- 68 FD+ETTG+D ++DRI+ V L + + L P G EA +HGI+ E Sbjct: 10 AFDLETTGIDIESDRIVTAALVFLEPDGRVSDERTWMLDP-GVVIPEEAAAIHGISTEQA 68 Query: 69 ---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122 + P+ + I + + NA++D+ ++ E +R PL + Sbjct: 69 RKHGVPAGPAVAEISTAVAQLLR-VGTPLVIMNARYDLSLLDRECRRHQVAPLSARQGAR 127 Query: 123 ---IIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 +ID L + + ++ R L +LC YG+ + Sbjct: 128 LHPVIDPLVLDKHADRYRKGRRTLQALCAHYGVPL 162 >gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 1429 Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FDIETTGL+ D I+E+ + ++ N TF + P R +P + +H IT+ Sbjct: 763 RIVFFDIETTGLNPSTDAIVEVAMFDPIE----NTTFHTLVNPQ-RSITPRTVGIHHITN 817 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 ++D P+ + + A + H VG Sbjct: 818 AMVRDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVG 854 >gi|317010079|gb|ADU80659.1| DNA polymerase III subunit epsilon [Helicobacter pylori India7] Length = 287 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 10/152 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEFLK 71 D+ETTG I+EIGAV++ NR F+ + K+ P+ + L GI E Sbjct: 77 DLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYISDLTGIAYEDTL 132 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 + PS + F N+ ++AHNA FD F+ PL ++ TL +++ Sbjct: 133 NAPSVHEALQKLRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLC-TLDLSK 189 Query: 132 RKHPSSRNDLNSL--CKRYGITISHRSKHGAL 161 R S R L+ L +GI +SHR+ AL Sbjct: 190 RAILSMRYSLSFLKELLGFGIEVSHRAYADAL 221 >gi|116494505|ref|YP_806239.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus casei ATCC 334] gi|227535524|ref|ZP_03965573.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631264|ref|ZP_04674295.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116104655|gb|ABJ69797.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus casei ATCC 334] gi|227186846|gb|EEI66913.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525729|gb|EEQ64730.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 180 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 31 AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ 90 A+ ++ +K +F + P + ++ + + +HGIT E ++D+P+F ++ F+ Sbjct: 22 ALVVVQQNKVVDSFYTLINPQMQFDA-QNIHIHGITPEMVQDQPTFDQVWPHIQMFYTPG 80 Query: 91 NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYG 149 AHNA FDV + L R ++IDT+ +R+ P N L+++ Sbjct: 81 RI-VTAHNAPFDVSVMRLTLDRYGIA-APRYQVIDTVKTSRQFLPKLPNHRLDTVSAALH 138 Query: 150 ITISHRSKHGALLDSHLLSDVYI 172 I + H H AL DS+ + + I Sbjct: 139 IPLEHH--HNALADSYACARILI 159 >gi|157866092|ref|XP_001681752.1| mitochondrial DNA polymerase I protein B [Leishmania major strain Friedlin] gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major strain Friedlin] Length = 1429 Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FDIETTGL+ D I+E+ + ++ N TF + P R +P + +H IT+ Sbjct: 763 RVVFFDIETTGLNPSTDAIVEVAMFDPIE----NSTFHTLVNPQ-RPITPRTVGIHHITN 817 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVG 104 ++D P+ + + A + H VG Sbjct: 818 AMVRDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVG 854 >gi|332877643|ref|ZP_08445386.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684392|gb|EGJ57246.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 258 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 7/138 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG+D DRI+EI +++ Y N+ + +L A +HGITDE + Sbjct: 12 FDLETTGIDITKDRIVEISILKV--YPNGNKESKTWLVNPTIPIPAMASAVHGITDEKVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++P+F + + + ++++ +N+ +FD+ + E+ R D +R+ T+ I Sbjct: 70 NEPTFKELAKQIHNMI--KDSDLAGYNSDRFDIPLLAEEMLRAGVDFDLGNRV--TVDIQ 125 Query: 131 RRKHPSSRNDLNSLCKRY 148 H + L++ K Y Sbjct: 126 TIFHKMEQRTLSAAYKFY 143 >gi|261416032|ref|YP_003249715.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372488|gb|ACX75233.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326359|gb|ADL25560.1| putative DnaQ family exonuclease/DinG family helicase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 905 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGLD + D IIE+ V + + + P+ + P L GI+ Sbjct: 8 VALDLETTGLDFEKDEIIEVALVR-FENGEPKENLDFLVKPSAVELRPFIETLTGISKAD 66 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ F++I + F + +AHNA FD F+ ++ D D+L++ Sbjct: 67 LESASDFATIAGQICSFVG--DLPIVAHNAVFDSKFLKQTFTKVGIS-YDSHVFWDSLTL 123 Query: 130 AR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R + P+ R L++L + + I H AL D+ +++K + Sbjct: 124 SRIAFQDVPNHR--LDTLVQE--LNIERSRAHRALPDADACGRLFVKAL 168 >gi|256843260|ref|ZP_05548748.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 125-2-CHN] gi|256614680|gb|EEU19881.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 125-2-CHN] Length = 926 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 13/170 (7%) Query: 11 VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L GI D+ Sbjct: 12 VVDLETTGTQRENGHHIIQFGCA-IIKNLKVVKTYSFLINPH-REIPQSVVNLTGIHDQD 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + F + QN ++AHN FD+ F+N EL + + L ++ IDT+ + Sbjct: 70 VAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH----LLSDVYIKM 174 A+ P+ L+ L + G I H H A D++ LL +++ K+ Sbjct: 127 AKIAFPTFPSYKLSDLTTQLG--IKHLDPHKADSDAYGTAVLLLEIFNKL 174 >gi|218670823|ref|ZP_03520494.1| DNA polymerase III subunit epsilon [Rhizobium etli GR56] Length = 164 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 50/107 (46%), Gaps = 16/107 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGL+ +ND IIEIGAV D ++ L R PE +L GI Sbjct: 65 VILDTETTGLNHRNDEIIEIGAVAFTFDDDRAIGDIVGIYGGLQQPSRPIPPEITRLTGI 124 Query: 66 TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 TD ++ D S S++ E D IAHNA FD F A Sbjct: 125 TDAMVEGQVIDMRSLSALI-EPADLI-------IAHNAGFDRPFCEA 163 >gi|301066020|ref|YP_003788043.1| DNA polymerase III subunit epsilon [Lactobacillus casei str. Zhang] gi|300438427|gb|ADK18193.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus casei str. Zhang] Length = 180 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 31 AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ 90 A+ ++ +K +F + P + ++ + + +HGIT E ++D+P+F ++ F+ Sbjct: 22 ALVVVQQNKVVDSFYTLINPQMQFDA-QNIHIHGITPEMVQDQPTFDQVWPHIQMFYTPG 80 Query: 91 NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYG 149 AHNA FDV + L R ++IDT+ +R+ P N L+++ Sbjct: 81 RI-VTAHNAPFDVSVMRLTLDRYGIA-APRYQVIDTVKTSRQFLPKLPNHRLDTVSAALH 138 Query: 150 ITISHRSKHGALLDSHLLSDVYI 172 I + H H AL DS+ + + I Sbjct: 139 IPLEHH--HNALADSYACARILI 159 >gi|227878664|ref|ZP_03996579.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01] gi|256850383|ref|ZP_05555811.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US] gi|262046469|ref|ZP_06019431.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus MV-3A-US] gi|227861728|gb|EEJ69332.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01] gi|256712780|gb|EEU27773.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US] gi|260573340|gb|EEX29898.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus MV-3A-US] Length = 926 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 13/170 (7%) Query: 11 VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L GI D+ Sbjct: 12 VVDLETTGTQRENGHHIIQFGCA-IIKNLKVVKTYSFLINPH-REIPQSVVNLTGIHDQD 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + F + QN ++AHN FD+ F+N EL + + L ++ IDT+ + Sbjct: 70 VAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH----LLSDVYIKM 174 A+ P+ L+ L + G I H H A D++ LL +++ K+ Sbjct: 127 AKIAFPTFPSYKLSDLTTQLG--IKHLDPHKADSDAYGTAVLLLEIFNKL 174 >gi|293380924|ref|ZP_06626958.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 214-1] gi|290922499|gb|EFD99467.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 214-1] Length = 926 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 13/170 (7%) Query: 11 VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L GI D+ Sbjct: 12 VVDLETTGTQRENGHHIIQFGCA-IIKNLKVVKTYSFLINPH-REIPQSVVNLTGIHDQD 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + F + QN ++AHN FD+ F+N EL + + L ++ IDT+ + Sbjct: 70 VAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH----LLSDVYIKM 174 A+ P+ L+ L + G I H H A D++ LL +++ K+ Sbjct: 127 AKIAFPTFPSYKLSDLTTQLG--IKHLDPHKADSDAYGTAVLLLEIFNKL 174 >gi|229187939|ref|ZP_04315044.1| exonuclease [Bacillus cereus BGSC 6E1] gi|228595536|gb|EEK53251.1| exonuclease [Bacillus cereus BGSC 6E1] Length = 181 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 8/104 (7%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N+ + ++ D ETTGL + D+IIEI ++L T + L EA +HG Sbjct: 21 NRDQFVILDTETTGLTLR-DQIIEICVIDL-----TGKILLNSLVKPTINIPAEAASIHG 74 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 IT+E + D PS+ I+ E + + +NA+FD+G I + Sbjct: 75 ITNEKVHDAPSWIEIYKELCEV--TAGKTLLIYNAEFDLGMIES 116 >gi|86160112|ref|YP_466897.1| exonuclease [Anaeromyxobacter dehalogenans 2CP-C] gi|85776623|gb|ABC83460.1| Exonuclease [Anaeromyxobacter dehalogenans 2CP-C] Length = 200 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/176 (20%), Positives = 80/176 (45%), Gaps = 17/176 (9%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF 69 D+ET GLD++ D I+ +G + + + + + ++ + P G+ SP +++ H + Sbjct: 16 LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEQGKAVSPRSVQAHQLVAGD 75 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + P+ + + E + A + H+A ++GF+ + + P P ++DT+ Sbjct: 76 TRGAPALAEVLPELERRL--RGAVLLVHHAPIELGFLKRAFRAAGLRWPAPP--VVDTVK 131 Query: 129 IA-------RRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + RR+ P D LN R + + H AL D+ +++++ + Sbjct: 132 LLLRLDARERRRFPELPADPPVLNLSAARRRLGLPDYQAHDALTDAVATAELFLVL 187 >gi|77360920|ref|YP_340495.1| hypothetical protein PSHAa1996 [Pseudoalteromonas haloplanktis TAC125] gi|76875831|emb|CAI87052.1| conserved protein of unknown function; putative enzyme [Pseudoalteromonas haloplanktis TAC125] Length = 730 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 10/164 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL- 60 I N++ +V D+ETTG ++I EIG V++ + K T+ + P +++ P + Sbjct: 561 IDPNRIYSVV-DLETTGALKGGNKITEIGLVKV-QHGKVIDTWTTLVNP--QRHIPGFIT 616 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GI+D + + P F+ I + ++AHN FD GFI E + + K P Sbjct: 617 SLTGISDSMVSNAPVFADIVKPLMA--KLAGSIFVAHNVNFDYGFIKKECE-MAKVPFKM 673 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 ++ + + L +L K + + ++ S H AL D+ Sbjct: 674 PKLCTVVESRKAFAGLKSYSLGNLSKHFNLNLT--SHHRALADA 715 >gi|41057226|ref|NP_958252.1| hypothetical protein VWBp10 [Streptomyces phage VWB] gi|39656049|gb|AAR29700.1| hypothetical protein [Streptomyces phage VWB] Length = 263 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 21/188 (11%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +K R + FD+ETTG+D + DRI+ A++L ++ T + +L G + A +HG Sbjct: 3 HKARMVAFDLETTGVDVEQDRIVTAAAIDL--GAEKPLTLE-WLADPGIEIPEGATAVHG 59 Query: 65 ITDEFLKDKPSFS----SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKD 116 IT E ++ + +E + HN +D+ ++ E +R + +D Sbjct: 60 ITTEHAREHGERAHDVVDQVAETLALRVRDGVPVVGHNVPYDLTLLDRECRRYELPLLQD 119 Query: 117 PLD--PSRIIDTLSIARRKHP--------SSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 LD P +IDT + + P L +L + Y + + HG D+ + Sbjct: 120 RLDGTPLHVIDTRVLDQHCLPYRKRVSETQGARQLITLAQVYSLPWDAEAAHGCSYDALM 179 Query: 167 LSDVYIKM 174 + + ++ Sbjct: 180 AARIAYRI 187 >gi|307709092|ref|ZP_07645551.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK564] gi|307620038|gb|EFN99155.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK564] Length = 816 Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 10/166 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D K + + P+ ++ +L G+TD Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIED-GKIVDHYSTDVNPHEPLDA-HIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNPR--VDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 120 ELAQVFFPEMEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|306823007|ref|ZP_07456383.1| epsilon subunit family exonuclease [Bifidobacterium dentium ATCC 27679] gi|304553639|gb|EFM41550.1| epsilon subunit family exonuclease [Bifidobacterium dentium ATCC 27679] Length = 186 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 10/106 (9%) Query: 11 VFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEAL-KLHGITD 67 + D ETTGL + IIEIGA+ + ++ R F+ + P ++ PE + +L GI+D Sbjct: 1 MLDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDP--QRPLPEFISRLTGISD 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNE-----QNAEWIAHNAKFDVGFINA 108 L++KP+ + F + ++ + IAHNA+FD+GF++A Sbjct: 59 GMLRNKPTADAAMLRFHQWLDDVWPAGRPLTVIAHNAEFDIGFLDA 104 >gi|126174849|ref|YP_001050998.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica OS155] gi|160875861|ref|YP_001555177.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica OS195] gi|125998054|gb|ABN62129.1| Exonuclease, RNase T and DNA polymerase III [Shewanella baltica OS155] gi|160861383|gb|ABX49917.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS195] gi|315268052|gb|ADT94905.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS678] Length = 228 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 29/186 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D+E TGL+ + D+I+ IG V E+ + Q+ R + ++ +HG Sbjct: 43 MAMDLEMTGLNPQQDQILSIGLVPIERGEIPLARAEQKLVQI------RGSVGQSATIHG 96 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLD-PSR 122 I D L + + W F N+ +AH+A D F+ +L I L P+ Sbjct: 97 ILDNHLVQAVTIEAAMG--W-FINQTYGRVLVAHHAPLDCRFLQQDLLAIYHQALVLPA- 152 Query: 123 IIDTLSIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDTL + R R+H + L + +RYG+ I + H AL D+ ++ + M Sbjct: 153 -IDTLMLERHRLLREHSVIKEGSLRLGACRERYGLPIY--TAHSALTDALACGELLLAQM 209 Query: 176 --VGGS 179 +GG+ Sbjct: 210 AAMGGA 215 >gi|333023692|ref|ZP_08451756.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] gi|332743544|gb|EGJ73985.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] Length = 239 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 17/165 (10%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDEFL 70 FD+ETTG D + DRI+ AV LD S + +L G + EA +HGI T Sbjct: 11 FDLETTGTDVEQDRIV-TAAVIRLDSSGAVAHTRTWLLDPGVEIPAEATAIHGIPTARAR 69 Query: 71 KDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL------DPS 121 D +E + + + NA++D+ ++ E +R L +P+ Sbjct: 70 ADGAPARGAVAEITEALAAELRVGTPLVVMNARYDLSLLDRECRRHGVPALAELLGAEPA 129 Query: 122 RIIDTLSI---ARRKHPSSRNDLNSLCKRYGITI--SHRSKHGAL 161 +ID L + A R SR L +LC Y + + +H ++ AL Sbjct: 130 PVIDPLVLDKHADRYRRGSRV-LAALCAHYDVRLDTAHDARSDAL 173 >gi|213618910|ref|ZP_03372736.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 218 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 22/154 (14%) Query: 26 IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85 I+EI +V+++D + N + P+ R +P+A+ +H IT+ + DKP + ++ Sbjct: 2 IVEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMVADKPWIEDVIPLYY- 58 Query: 86 FFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSL 144 +EW +AHNA FD + P P I T+ ++RR P + +L Sbjct: 59 -----GSEWYVAHNASFDRRVL----------PELPGEWICTMKLSRRLWPGIKYSNMAL 103 Query: 145 CKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 K +++ H AL D ++ + + I +M Sbjct: 104 YKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 137 >gi|332829625|gb|EGK02271.1| hypothetical protein HMPREF9455_01541 [Dysgonomonas gadei ATCC BAA-286] Length = 256 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 29/120 (24%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN------------SP 57 + FD+ETTG D+ DRI+EI +++ PNG++ P Sbjct: 10 VFFDLETTGTDTVKDRIVEISYLKVY--------------PNGKQEVKTKRLNPEMPIPP 55 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD 116 A +HGI+DE +KD P+F I D + + N ++FD+ + E R D Sbjct: 56 GATAVHGISDEDVKDCPTFKQIAKSLAD--QMEGCDLAGFNSSRFDIPLLAEEFLRAGVD 113 >gi|330898573|gb|EGH29992.1| ribonuclease T [Pseudomonas syringae pv. japonica str. M301072PT] Length = 186 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 17/156 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + +D + T+ + P G AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ ++ + + IF A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150 ++P P DT ++A + + L C+ GI Sbjct: 153 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGI 186 >gi|239928182|ref|ZP_04685135.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291436512|ref|ZP_06575902.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291339407|gb|EFE66363.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] Length = 238 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 15/154 (9%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG D + DRI+ AV L+ + +L G +A +HGI E + Sbjct: 12 FDLETTGTDIETDRIV-TAAVVRLEPDGAVSAERTWLLDPGVVIPEQAAAIHGIPTEHAR 70 Query: 72 DK--PSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD------P 120 P+ +I E E + NA++D+ ++ E +R + L P Sbjct: 71 AHGVPAPRAI-EEITRAVAEVLRAGTPLVVMNARYDLSLLDRECRRYGLESLSERLGAVP 129 Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 S ++D L I + ++ + L++LC YG+++ Sbjct: 130 SPVVDPLVIDKHVDQYRKGKRALHALCAYYGVSL 163 >gi|153006661|ref|YP_001380986.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] gi|152030234|gb|ABS28002.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] Length = 200 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 21/187 (11%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC----PNGRKNSPEALKLHGITD 67 D+ET GLD++ D II IG + + T R + + P GR P++++ H + Sbjct: 16 LDLETGGLDARRDPIIAIGMLPI--RHGTLRLGEAYYSLVRPPPGRIIDPDSVRAHQLVA 73 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L++ P+ + E E + H+ DV F+ +R P R++DT+ Sbjct: 74 GELREAPAIGEVLREVDRRLRE--GVLLVHHRALDVAFLKDAYRRCGMRWPAP-RVVDTV 130 Query: 128 SI---ARRKHPSSRNDLNSLCKRYGITISHR-------SKHGALLDSHLLSDVYIKM--M 175 + A+R+ P L + +T + R H AL D+ +++++ + + Sbjct: 131 DLLIRAKRRSPFKDPHLPPVLPVLNLTRARREYGLPDYQAHDALSDAIAAAELFLVLRSV 190 Query: 176 VGGSQIN 182 VG ++ Sbjct: 191 VGARRLR 197 >gi|301301275|ref|ZP_07207430.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851151|gb|EFK78880.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a] Length = 177 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGIT++ +++ PSF ++ +FF N +AHNA FD + L+ + L Sbjct: 50 IQVHGITEKQVQNAPSFPELWPHIQNFFTPNNL-IVAHNASFDSSVLLRTLEHYDIT-LP 107 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMV 176 +++DTL +++ N L+++C I + H H AL DS +++ Y + Sbjct: 108 HYQLLDTLRTSKKFFKDLENHKLDTICNNLNIDLKHH--HNALFDSTACAEILLYQANLF 165 Query: 177 GGSQI 181 G Q+ Sbjct: 166 GEDQL 170 >gi|91079959|ref|XP_969470.1| PREDICTED: similar to three prime repair exonuclease 1 [Tribolium castaneum] gi|270003252|gb|EEZ99699.1| hypothetical protein TcasGA2_TC002459 [Tribolium castaneum] Length = 319 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 26/150 (17%) Query: 10 IVFDIETTGL---DSKNDRIIEIGAV-------ELLDYSKTNRTFQVFLCPNGRKN-SPE 58 + D+ETTGL + RI E+ AV EL + + ++ LC N K SPE Sbjct: 35 VFLDLETTGLPHLEHNKTRITELCAVSVRADHIELGCFPRVQN--KLSLCFNPMKMISPE 92 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNA-KFDVGFINAELQRI- 113 A L G++++ L+ + SFSS + W N++ +AHN +FD + AE+++ Sbjct: 93 ATSLTGLSNDLLEYQASFSSDAVDVIRKWLEMNQKPICLVAHNGNRFDYPILRAEVEKTR 152 Query: 114 NKDP--------LDPSRIIDTLSIARRKHP 135 NK P L+ R IDTL K P Sbjct: 153 NKLPEDILCLDSLNAFRSIDTLEAEAVKQP 182 >gi|218289182|ref|ZP_03493418.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius LAA1] gi|218240765|gb|EED07944.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius LAA1] Length = 952 Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 22/176 (12%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 M I+ D ETTGL+ + I+EIGA+ E++D TF + P R E + Sbjct: 1 MEWIIVDFETTGLEPERAEILEIGALRVRGGEIVD------TFHTLVRPE-RPIPDEITR 53 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G++D + PS F F + H+ F+ F+ R PL P Sbjct: 54 LTGLSDTDVAGAPSEREALMRFATFAGD--TPMAGHHWAFERSFLRDRASRYGL-PLQPG 110 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKM 174 + TL++AR P + L L +R + ISHR AL D+H + +++ Sbjct: 111 DGLCTLNLARILAPRLMSHRLEYLARRLCLRAEISHR----ALADAHTAHQLLMRL 162 >gi|70732181|ref|YP_261937.1| ribonuclease T [Pseudomonas fluorescens Pf-5] gi|123653314|sp|Q4K746|RNT_PSEF5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|68346480|gb|AAY94086.1| ribonuclease T [Pseudomonas fluorescens Pf-5] Length = 223 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI A + +D + T+ + P G AL+ G Sbjct: 31 VVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 90 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ ++ + + IF A + HN+ FD+GF+NA + R++ Sbjct: 91 IKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDMK 150 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ I R H A D+ ++++ + Sbjct: 151 RNPFHPFSSFDTATLAGLAY--GQTVLAKACQSADIDFDGREAHSARYDTEKTAELFCGI 208 Query: 175 M 175 + Sbjct: 209 V 209 >gi|256377528|ref|YP_003101188.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] gi|255921831|gb|ACU37342.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] Length = 262 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 25/207 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + D+ETT ++ + DRI+ V + + +K + + +L G A +HGI+ Sbjct: 16 LALDLETTDVEPRRDRIVTASVVVITPGAEGAKPDVRVRTWLADPGVPIPASATAIHGIS 75 Query: 67 DEFLK--DKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 E + +P ++ +E W + A NA FD+ ++AEL R + L Sbjct: 76 TEQARAEGRPVGEVVAEVEALLAELWT----ASTPLCAFNAPFDLTMLDAELLRHHGRSL 131 Query: 119 DPS-RIIDTLSIARRKHPS--SRNDLNSLCKRYGITI--SHRSKHGALLDSHL---LSDV 170 S ++D L + R P + L ++C+ +G+ + +H S AL + L L+ V Sbjct: 132 RVSGPVVDPLCVDRALDPRRVGKRTLGAVCEHHGVRLEGAHTSAGDALAAARLAWKLARV 191 Query: 171 YIKMMVGGSQINFGFKTNEDRFFKEEK 197 + + VGG ++ + +F+E++ Sbjct: 192 H-PVEVGGIALSE-LHERQVGWFREQE 216 >gi|295133095|ref|YP_003583771.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] gi|294981110|gb|ADF51575.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] Length = 257 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 58/106 (54%), Gaps = 5/106 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG + DRI+EI +++ Y N+ + +L + E + +HGI++E + Sbjct: 12 FDLETTGTNLAKDRIVEIAILKV--YPNGNKESRTWLVNPEMEIPKEVIAIHGISNEKVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 ++P+F + + +D + + +N+ +FD+ + EL R + D Sbjct: 70 NEPTFKELSKQIYDMI--KGCDLGGYNSNRFDIPLLAEELLRADID 113 >gi|313679706|ref|YP_004057445.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977] gi|313152421|gb|ADR36272.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977] Length = 252 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 8/155 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + IIEI A+ ++ + R F + P G P +L GI+ Sbjct: 79 VVLDLETTGLSPSENEIIEI-ALMRVEPGRVER-FARLVNP-GSPIPPFITRLTGISSAD 135 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P + E + + A + NA FD+GF+ R+ + +IDT+ Sbjct: 136 VADAPDVYTALEEALPYL--EGAVLVIQNAPFDLGFLRPRACRLGVKIHN--EVIDTVQW 191 Query: 130 A-RRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 A R R L+ L + + ++I ++H AL D Sbjct: 192 ARRALPRMRRRGLDHLIRAFEVSIETGARHRALGD 226 >gi|89890830|ref|ZP_01202339.1| DNA polymerase III [Flavobacteria bacterium BBFL7] gi|89516975|gb|EAS19633.1| DNA polymerase III [Flavobacteria bacterium BBFL7] Length = 453 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 9/154 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTG + I EI A+ D + F + P ++ P +KL GI ++ L Sbjct: 4 IVDVETTGGKFNEEGITEI-AIYKFDGHEIVDQFASLVNPE-KEIQPFVVKLTGINNKML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P F + + Q +AHNA FD + E +R+ + ++ + T+ +A Sbjct: 62 ARAPKFYEVAKRIIEIM--QGTVLVAHNANFDYRMLRIEFERLGYEF--HTQTLCTVELA 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGAL 161 ++ P + L L + GI I+ HR+ AL Sbjct: 118 QQLMPEEESYSLGKLTRSLGIPITDRHRATGDAL 151 >gi|241589662|ref|YP_002979687.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12D] gi|240868374|gb|ACS66033.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12D] Length = 330 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 6/109 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D ETTGL + + D ++E+ ++ D K F+ + PN P A +HGIT Sbjct: 159 RTVYLDTETTGLSAASGDELLELAVID--DAGKV--LFETLIRPNHLTEWPAAQVIHGIT 214 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 + PS S++ A + NA FD+GF+ L+ + K Sbjct: 215 PADVAGAPSLSAVLQGLAAAIEGAEAL-VIFNADFDLGFLPEPLRPLAK 262 >gi|33865550|ref|NP_897109.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8102] gi|33632719|emb|CAE07531.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8102] Length = 256 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 20/170 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D ETTGLD + DR +E+GA+ L D S ++ Q FL P N+ E ++ I Sbjct: 28 LIIDTETTGLDPEKDRCLEVGAI-LFDVSTRSVLAQQSFLLPV-ETNAAE--PINRIPAS 83 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++ F + + +AHNA FD Q +DPL S Sbjct: 84 VTRLPQPWTGALRWFDELLTASDVL-VAHNAVFD-------RQWFGRDPLPAVSHPWLCS 135 Query: 129 IARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + P+ SR + L YG+ + S H AL D + L++V+ + Sbjct: 136 MEDLRWPAERQLRSRPSVRDLALAYGVPVW--SAHRALTDCNYLAEVFAR 183 >gi|238749568|ref|ZP_04611073.1| Exodeoxyribonuclease 10 [Yersinia rohdei ATCC 43380] gi|238712223|gb|EEQ04436.1| Exodeoxyribonuclease 10 [Yersinia rohdei ATCC 43380] Length = 219 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 27/170 (15%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GLD I+EI +V+++D +N + P+ R S +A+ +H IT+E + Sbjct: 5 VIDTETCGLDGG---IVEIASVDVVDGVLSN-PMSDLVSPD-RPISLDAMVIHHITEEMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P + ++ + + ++AHNA FD G + P + I TL +A Sbjct: 60 EGMPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104 Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175 R +P ++ L RY + ++ + H AL D ++ + + ++M Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSIPENLYPHRALYDCYVTAALLQRIM 152 >gi|90962124|ref|YP_536040.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus salivarius UCC118] gi|227891147|ref|ZP_04008952.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus salivarius ATCC 11741] gi|90821318|gb|ABD99957.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus salivarius UCC118] gi|227867021|gb|EEJ74442.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus salivarius ATCC 11741] Length = 177 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGIT++ +++ PSF ++ +FF N +AHNA FD + L+ + L Sbjct: 50 IQVHGITEKQVQNAPSFPELWPHIQNFFTPNNL-IVAHNASFDSSVLLRTLEHYDIT-LP 107 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMV 176 +++DTL +++ N L+++C I + H H AL DS +++ Y + Sbjct: 108 HYQLLDTLRTSKKFFKDFENHKLDTICNNLNIDLKHH--HNALFDSTACAEILLYQANLF 165 Query: 177 GGSQI 181 G Q+ Sbjct: 166 GEDQL 170 >gi|239939981|ref|ZP_04691918.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] gi|239986465|ref|ZP_04707129.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 11379] gi|291443411|ref|ZP_06582801.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] gi|291346358|gb|EFE73262.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] Length = 241 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 13/154 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ A+ D + +L G P A ++HG+ D+ L Sbjct: 11 AFDTETTGVDVERDRIVS-AALVAQDTAGGRVRVTRWLVNPGIPVPPGATEIHGLADDHL 69 Query: 71 KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPLD------P 120 + + + + E E A + NA FD+ ++ EL+R L P Sbjct: 70 QRNGRWPAPVMDEIARALAESCATGRPLVVMNAPFDLTLLDRELKRHRASSLARYLDGVP 129 Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 R++D + + ++ R L LC Y + + Sbjct: 130 MRVVDPRVLDKHLDRYRKGRRTLTDLCASYEVVL 163 >gi|325279748|ref|YP_004252290.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] gi|324311557|gb|ADY32110.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] Length = 260 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 6/122 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTG++ DRI+EI +++ Y + G EA +HGI DE Sbjct: 10 VFFDLETTGINIAKDRIVEISVLKV--YPNGKEEQKTIRVNPGMHIPEEASAIHGIYDED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127 +KD P F I E + + + +N+ +FD+ + E R D + + +D Sbjct: 68 VKDAPMFKHIARELAHYI--EGCDLGGYNSNRFDIPLLAEEFLRAEVDFDMSKRKFVDVQ 125 Query: 128 SI 129 +I Sbjct: 126 TI 127 >gi|237738098|ref|ZP_04568579.1| predicted protein [Fusobacterium mortiferum ATCC 9817] gi|229419978|gb|EEO35025.1| predicted protein [Fusobacterium mortiferum ATCC 9817] Length = 474 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 4/122 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+ +ETTGL+ D I++I A+ + + + + TF+ F+ P + EA +++GIT E Sbjct: 8 IIVSLETTGLNHLVDEILKIEAIRIENGNIVD-TFKEFIKPK-FEIPKEASRINGITFED 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ PS + +F + F ++ +A+NA+F FI +R K+ + ID LS+ Sbjct: 66 VKNSPSIEDVLDKFKN-FRKKGDILVAYNAEFVSKFIGFNFKRY-KNSIFSHEFIDLLSL 123 Query: 130 AR 131 R Sbjct: 124 VR 125 >gi|254457146|ref|ZP_05070574.1| exonuclease [Campylobacterales bacterium GD 1] gi|207085938|gb|EDZ63222.1| exonuclease [Campylobacterales bacterium GD 1] Length = 247 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++ D ETTG+ +NDR+I++G V L +K F + S A+++HGIT Sbjct: 4 KYVILDTETTGV-GENDRVIQLGYVVL--GAKDVEVHNEFYSSD-VPISFGAMEVHGITP 59 Query: 68 EFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + L++KP+ S + + +N I HNA FD+G + E + N ++ID Sbjct: 60 DMLENKPACRDSVAYKRLCELNVSENY-MIIHNAPFDLGML--EKEGFNTQ----MKVID 112 Query: 126 TLSIARRKHP 135 TL +A+ P Sbjct: 113 TLRVAKHILP 122 >gi|191637943|ref|YP_001987109.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus casei BL23] gi|190712245|emb|CAQ66251.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus casei BL23] gi|327382013|gb|AEA53489.1| hypothetical protein LC2W_1155 [Lactobacillus casei LC2W] gi|327385171|gb|AEA56645.1| hypothetical protein LCBD_1147 [Lactobacillus casei BD-II] Length = 180 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 31 AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQ 90 A+ ++ +K +F + P + ++ + + +HGIT E ++D+P+F ++ F+ Sbjct: 22 ALVVVQQNKVVDSFYTLINPQMQFDA-QNIHIHGITPEMVQDQPTFDRVWPHIQMFYTPG 80 Query: 91 NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYG 149 AHNA FDV + L R ++IDT+ +R+ P N L+++ Sbjct: 81 RI-VTAHNAPFDVSVMRLTLDRYGIA-APRYQVIDTVKTSRQFLPKLPNHRLDTVSAALH 138 Query: 150 ITISHRSKHGALLDSHLLSDVYI 172 I + H H AL DS+ + + I Sbjct: 139 IPLEHH--HNALADSYACARILI 159 >gi|295095557|emb|CBK84647.1| Exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 220 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 25/169 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET L I+E+ +V+++D K + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCDLQGG---IVEVASVDVID-GKIVNPMSHLVRPD-RPISAQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 DKP I + ++W +AHNA FD + P P I T+ + Sbjct: 59 ADKPWIEEIIPLY------HGSQWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 Query: 130 ARRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 ARR P + +L K +++ H AL D ++ + + I +M Sbjct: 103 ARRLWPGIKYSNMALYKSRKLSVRTPEGLHHHRALYDCYITAALLIDIM 151 >gi|300214810|gb|ADJ79226.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus salivarius CECT 5713] Length = 177 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGIT++ +++ PSF ++ +FF N +AHNA FD + L+ + L Sbjct: 50 IQVHGITEKQVQNAPSFPELWPHIQNFFTPNNL-IVAHNASFDSSVLLRTLEHYDIT-LP 107 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMV 176 +++DTL +++ N L+++C I + H H AL DS +++ Y + Sbjct: 108 HYQLLDTLRTSKKFFKDFENHKLDTICNNLNIDLKHH--HNALFDSTACAEILLYQANLF 165 Query: 177 GGSQI 181 G Q+ Sbjct: 166 GEDQL 170 >gi|162147891|ref|YP_001602352.1| exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5] gi|209542508|ref|YP_002274737.1| Exonuclease RNase T and DNA polymerase III [Gluconacetobacter diazotrophicus PAl 5] gi|161786468|emb|CAP56050.1| putative exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5] gi|209530185|gb|ACI50122.1| Exonuclease RNase T and DNA polymerase III [Gluconacetobacter diazotrophicus PAl 5] Length = 269 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 9/106 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN------SPEALKLHG 64 V D+ET+G ++ + I+EIG ++ + T+ + P R +P+ + +H Sbjct: 18 VIDLETSGRNAADGGIVEIGWQDV--ARDADGTWALAGPPGARLTHPGGPITPQTMAIHH 75 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 ITD ++D P F+ I + ++ A AH A F+ G+I L Sbjct: 76 ITDAHVRDAPPFAEIAPDIL-HPADRPAAMAAHRASFEQGWIRGSL 120 >gi|256828365|ref|YP_003157093.1| DNA polymerase III subunit epsilon [Desulfomicrobium baculatum DSM 4028] gi|256577541|gb|ACU88677.1| DNA polymerase III, epsilon subunit [Desulfomicrobium baculatum DSM 4028] Length = 244 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 15/175 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D E TGL ++ + I+ IGAV + + +F V + P+ L +H IT E Sbjct: 48 VLDTELTGLSARREEIVSIGAVRVRGLAIVPGESFSVLVRPSIPLPKTSTL-IHRITPEA 106 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + + E +F + + H+ D+ F+N ++ + PL + +DT+ + Sbjct: 107 IAQAPPLAEVLPELIEFC--KGTLIVGHHVGLDMSFLNRACRKNHGQPLA-NPCLDTMRM 163 Query: 130 A---RRKHPSSRNDLNSLCKRYGIT-ISHR------SKHGALLDSHLLSDVYIKM 174 A R K S + +L Y +T ++H + H AL D+ + ++I + Sbjct: 164 AMLWREKRTPSHYEQFNLSISYVLTDLAHEFDLPRFTAHEALGDALQTAYLFIYL 218 >gi|307708507|ref|ZP_07644972.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus mitis NCTC 12261] gi|307615423|gb|EFN94631.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus mitis NCTC 12261] Length = 816 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D K + + P+ ++ +L G+TD Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIED-GKIVDHYTTDVNPHEPLDA-HIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNPR--VDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPKLEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLQEKMAQLPKGL 176 >gi|108760097|ref|YP_630122.1| exonuclease [Myxococcus xanthus DK 1622] gi|108463977|gb|ABF89162.1| exonuclease [Myxococcus xanthus DK 1622] Length = 219 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS-PEALKLH 63 +R + F D+ETTGLD+ ++E+ + + S K ++ + P ++ PEAL + Sbjct: 28 LRTLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEARVKPTRLADAHPEALAVC 87 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPS 121 G +DE +D + + HN FD GF+ +R + +D Sbjct: 88 GYSDEEWRDALPLQEVLATVTPLLAGTLVA--GHNTSFDWGFLVESYRRSELALPSVDYH 145 Query: 122 RIIDTLSIARRKHPSSRND---LNSLCKRYGITISHR-SKHGALLDSHLLSDV----YIK 173 R +DT S+A + + LN+L KR+G+ HR + H A+ D+ +V ++ Sbjct: 146 R-LDTASLAWPLLATGEVESLSLNALAKRFGL---HRPTPHRAMADARCALEVARCLAVR 201 Query: 174 MMVGG 178 M GG Sbjct: 202 MARGG 206 >gi|302541136|ref|ZP_07293478.1| putative DNA polymerase III epsilon subunit [Streptomyces hygroscopicus ATCC 53653] gi|302458754|gb|EFL21847.1| putative DNA polymerase III epsilon subunit [Streptomyces himastatinicus ATCC 53653] Length = 241 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 13/155 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D ++DRI+ V + + P G A ++HG+TD L Sbjct: 11 AFDTETTGIDVEHDRIVSAALVVQRGAGSLPEVRRWLVSP-GIPVPQAATEIHGLTDTHL 69 Query: 71 KDKPSF-SSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + + E EQ A + NA FD+ ++ EL+R L + + Sbjct: 70 QQHGRWPAPVMDEVARALAEQTARGTPVVVMNAPFDLTLLDRELKRHRNATLATYLSLRS 129 Query: 127 LSIARR--------KHPSSRNDLNSLCKRYGITIS 153 LS+ ++ R L LC YG+ ++ Sbjct: 130 LSVLDPRVLDKHLDRYRKGRRTLTDLCAHYGVELT 164 >gi|85059419|ref|YP_455121.1| ribonuclease T [Sodalis glossinidius str. 'morsitans'] gi|84779939|dbj|BAE74716.1| ribonuclease T [Sodalis glossinidius str. 'morsitans'] Length = 234 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 15/136 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++ D ++EI AV L +D + + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAVTDALLEIAAVTLKMDDDGWLQADSTLHFHVDPFPGALLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + IF +Q A +AHNA FD GF+ A + R + Sbjct: 80 IDPHNPLRGAVGEYEALHEIFKMVRKGIKDQGCNRAIIVAHNAAFDHGFLMAAVSRAGLK 139 Query: 115 KDPLDPSRIIDTLSIA 130 ++P P DT +++ Sbjct: 140 RNPFHPFATFDTAALS 155 >gi|268679463|ref|YP_003303894.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] gi|268617494|gb|ACZ11859.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum deleyianum DSM 6946] Length = 203 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 11/171 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL+ K D I+ IGAV++ + + F++F+ P N ++K+H I + Sbjct: 32 VVFDTETTGLNPKKDEILSIGAVKVRGNKILMSEKFELFVKPRFEVNE-TSIKIHQIRNI 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127 +++ S +F F + + + +FDV IN L+ +N +P + L Sbjct: 91 DVQNALSPREAIEQFLHFIGAR--PLVGYYLEFDVAMINKYLKAWLNIYLPNPQIELSGL 148 Query: 128 SIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++ P DL + + K G+ I KH AL D+ + + +Y+K+ Sbjct: 149 YHDKKIKRIPDGVIDLRFDVMMKELGLPIF--GKHDALNDAMMSAMMYVKL 197 >gi|170720300|ref|YP_001747988.1| ribonuclease T [Pseudomonas putida W619] gi|169758303|gb|ACA71619.1| ribonuclease T [Pseudomonas putida W619] Length = 224 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + K T+ + P G AL+ G Sbjct: 32 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFYRVEPFEGANIEAAALEFTG 91 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I D L+ ++ + + IF A + HN+ FD+GF+NA + R + Sbjct: 92 IKLDHPLRMAVSEENALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVTRNDLK 151 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++A + + L C+ I R H A D+ ++++ + Sbjct: 152 RNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCGI 209 Query: 175 M 175 + Sbjct: 210 V 210 >gi|242373764|ref|ZP_04819338.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W1] gi|242348501|gb|EES40103.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W1] Length = 900 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 14/163 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + + + + + P L I +E Sbjct: 8 VVDLETTGNQLDYDEIIQIG----ITFVRNQQIIDTYHSMIRTDLEIPPFIQALTSIEEE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P F+ + D +N+ ++ ++AHN FD+ FI N P +++DTL Sbjct: 64 MLAQAPYFNEVAE---DIYNQIKDCIFVAHNISFDLNFIKNAFDNCNIQ-FRPKKVMDTL 119 Query: 128 SIARRKHPSSRN-DLNSLCKRYGI--TISHRSKHGALLDSHLL 167 + + P+ ++ L+ L + + I T +HR+ A + L+ Sbjct: 120 ELFKIAFPTDKSYQLSELAQSHNIPLTNAHRADEDATTTAKLM 162 >gi|242239125|ref|YP_002987306.1| ribonuclease T [Dickeya dadantii Ech703] gi|242131182|gb|ACS85484.1| ribonuclease T [Dickeya dadantii Ech703] Length = 225 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI AV L +D + + + T + P G +P+AL +G Sbjct: 22 VVIDVETAGFNAQTDALLEIAAVTLKMDDNGWLQPDETLHFHIEPFEGAILNPDALAFNG 81 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQR--IN 114 I T+ + + + IF ++ +AHNA FD F+ A +R + Sbjct: 82 IDPTNPLRGAVSEYEALHEIFKMVRKGIKDKGCNRGIVVAHNAAFDHSFLMAAAERCGLK 141 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT S++ + L C I H AL D+ ++++ ++ Sbjct: 142 RNPFHPFVTFDTTSLSGLV--LGQTVLAKACITADILFDSSQAHSALYDTQRTAELFCEL 199 Query: 175 M 175 + Sbjct: 200 V 200 >gi|332521177|ref|ZP_08397635.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola 5H-3-7-4] gi|332043270|gb|EGI79467.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola 5H-3-7-4] Length = 257 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 3/105 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG++ DR++EI +++ + N+ + +L E +HGITDE + Sbjct: 12 FDLETTGINISKDRVVEISILKV--FPNGNKESKTWLVNPEMPIPAEVSAIHGITDERVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 ++P+F+ + E + + N +FD+ + E+ R N D Sbjct: 70 NEPTFAELAKEINVMIKDSDLAGFNSN-RFDIPLLAEEMLRANMD 113 >gi|90420422|ref|ZP_01228329.1| polymerase III, epsilon subunit and related 3'-5' exonucleases [Aurantimonas manganoxydans SI85-9A1] gi|90335150|gb|EAS48903.1| polymerase III, epsilon subunit and related 3'-5' exonucleases [Aurantimonas manganoxydans SI85-9A1] Length = 260 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 29/178 (16%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ET G ++D +IEIG++++ L Q P G +P A ++H I+D Sbjct: 18 VIDVETAGHRLEDDAVIEIGSIDVDLATGVIGNPLQTLCDPAGVAINPHARRVHQISDAM 77 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P F+ F + A A FD + R + T + Sbjct: 78 LDGAPPFAEAVRPF-----ASAGLYAAQRASFDRSRLRLT-----------GRWLCTYKL 121 Query: 130 ARRKHPSSR-NDLNSLCKRYGITIS-----------HRSKHGALLDSHLLSDVYIKMM 175 A R P R + L SL K + +S HR+ + A+ + LL + +M Sbjct: 122 ALRAFPQVRAHGLQSLVKYVPLDLSEVRPMLEGLHPHRALYDAVCTAVLLRTIAATLM 179 >gi|306829204|ref|ZP_07462394.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis ATCC 6249] gi|304428290|gb|EFM31380.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis ATCC 6249] Length = 830 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 20/180 (11%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKN 55 M+ R +V D+E T SK +II++G V E++D T+ + P+ + Sbjct: 1 MMNARNDRYVVVDLEATSTGSKA-KIIQVGIVVIENGEIVDQYATD------VNPHEPLD 53 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 S +L G+TD+ L P FS + + ++ ++ ++AHN +FD + AE Sbjct: 54 S-HIKELTGLTDQRLAAAPEFSQVAGKIFELV--KDGVFVAHNVQFDANLL-AEFLFFEG 109 Query: 116 DPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L R +DT+ +A+ +P + +L LC+ GI + H AL D+ +++ + M Sbjct: 110 YELRTPR-VDTVELAQVLYPQFEKYNLGILCQELGIELEQ--AHTALSDAQATAELLLYM 166 >gi|85713236|ref|ZP_01044262.1| RNase T, degrades tRNA [Idiomarina baltica OS145] gi|85692931|gb|EAQ30903.1| RNase T, degrades tRNA [Idiomarina baltica OS145] Length = 222 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-----KTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++ D ++EI AV +L++ K + Q + P G A++ + Sbjct: 31 VVIDVETAGFNASTDALLEIAAV-ILNFDEHGQLKPVESHQFHVEPFEGANIEQAAIEFN 89 Query: 64 GIT--DEFLKDKPSFSSIFSEFWDFFNEQNAE------WIAHNAKFDVGFI--NAELQRI 113 GI E P + + F Q A + HN+ FD F+ AE I Sbjct: 90 GIDPHSELRGALPEDEVLKALFKPIRKAQKAAGCQRSVLVGHNSNFDHSFLMRAAERANI 149 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT S+A + L CK GI + H AL D+ ++++ Sbjct: 150 KRNPFHPFVSFDTTSLAALT--LGQTVLIKACKAAGIEFDQKQAHSALYDTEKTAELFCW 207 Query: 174 MM 175 M+ Sbjct: 208 MV 209 >gi|296110415|ref|YP_003620796.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154] gi|295831946|gb|ADG39827.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154] Length = 801 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 9/174 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG +K RII+IG + + K F+ F+ P G+ + +L I+ + Sbjct: 8 VVVDLETTGQSVAKGGRIIQIG-MTFIKQRKIVDHFESFVNP-GQLIARNIQQLTHISQK 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ P F I + ++A IAHN FD ++N E R L+ S IDT+ Sbjct: 66 EVKNAPYFEEIAPLLQNLL--KDAVIIAHNINFDYPYLNDEFVRTGFQKLN-SAAIDTVQ 122 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +A+ P++ L L IT++ + H A D+H + +++K+ Q+ Sbjct: 123 LAQILLPTAPGYRLLDLTTYLDITLN--NAHRANADAHATALLFLKLWQRAEQL 174 >gi|149372989|ref|ZP_01891945.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] gi|149354349|gb|EDM42916.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] Length = 472 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 84/179 (46%), Gaps = 20/179 (11%) Query: 11 VFDIETTGLDSKNDR----IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65 V D+ETTG + II + +E++D + ++++ P+ + L GI Sbjct: 10 VIDVETTGGVGQGRMTEICIITVENMEIVDVWSSLINPEIYI--------PQHITALTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ + D P F + + + ++A ++AHN FD GF+ E I + + Sbjct: 62 TDQMVTDAPRFCDVAAIIEE--KTRDAIFVAHNVNFDYGFLKKEFDLIGAS--FSRKKLC 117 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 T+ ++R+ P L+ LC+ GI++ H A D+ + ++++++ S NF Sbjct: 118 TVRLSRKLIPGLPSYSLSKLCRSIGISL--LDAHRAEADTRATTTLFLQLLEKDSVANF 174 >gi|295133359|ref|YP_003584035.1| exonuclease domain-containing protein [Zunongwangia profunda SM-A87] gi|294981374|gb|ADF51839.1| exonuclease domain-containing protein [Zunongwangia profunda SM-A87] Length = 475 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 9/155 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG K ++I EI V ++ + + + P G + L I D+ L Sbjct: 8 IIDIETTGGGIKGNKITEI-CVLVVQNGEVINEYTSLVNP-GTEIPLYIETLTNINDKML 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P FS I S+ + ++ ++AHN FD I AE + +N R+ T+ +A Sbjct: 66 VDAPKFSEIASKIQEI--TRDCIFVAHNVNFDYNIIKAEFESLNLS-FQRKRLC-TVRLA 121 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 ++ P + L +LC I I H +KH A D Sbjct: 122 KKLIPGLFSYSLGNLCT--SINIPHDNKHRAYGDC 154 >gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25] gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25] gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni S3] gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 326 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 15/163 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPEALKLHGIT 66 +V D+ETTG D K + I+EI A+ + K ++ +V P+ + GI Sbjct: 35 VVIDLETTGFDPKCNEILEIVALRYENNEKIAEFSKLIKVSFLPSF------ITEFTGIN 88 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ +K+ S EF DF + +AHNA FD+ F+ P +DT Sbjct: 89 EDMIKNCNDISQTLKEFDDFLKSGDI-LVAHNAHFDINFLYDNFMCYLNKPFSFD-FVDT 146 Query: 127 LSIARR-KHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHL 166 + +++ + + L LC +Y I +HR + L +HL Sbjct: 147 MRLSKLINQELAHHRLKDLCNQYNICYENAHRGEKDCEL-THL 188 >gi|326692531|ref|ZP_08229536.1| Rad3-related DNA helicase [Leuconostoc argentinum KCTC 3773] Length = 801 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 21/180 (11%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRT---FQVFLCPNGRKNSPEALKLHGI 65 +V D+ETTG ++ RII+IG + + K R F+ F+ P G+ +L I Sbjct: 8 VVVDLETTGQSVARGGRIIQIG----MTFIKNRRIVDHFESFVNP-GQPIDRNIQQLTHI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +++ ++D P F I + Q+ IAHN FD ++N EL R P+ + ID Sbjct: 63 SEKDVRDAPYFEEIVPVLRNML--QDTVLIAHNINFDYPYLNDELARTGF-PVLNNPAID 119 Query: 126 TLSIARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 T+ +A+ P++ DL + + I+ + H A D+ + +++K+ Q+ Sbjct: 120 TVQLAQILLPTAPGYRLLDLTTF-----LNITLNNAHRANADAQATALLFLKLWQKAEQL 174 >gi|318057465|ref|ZP_07976188.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] gi|318076919|ref|ZP_07984251.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] Length = 244 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 13/163 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + R FD+ETTG+D + DRI+ V+ T V+L G + A Sbjct: 1 MTAWHTGRLCGFDLETTGIDVEADRIVTACVVQCGGGQDTASA--VWLADPGVEIPEGAA 58 Query: 61 KLHGITDEFLKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 K+HGIT E + + P +A NA +D+ ++ E +R Sbjct: 59 KVHGITTEQARAEGRPAPEVVEQVVAALAQVARDGVPVVAMNASYDLTLLDREARRHGVQ 118 Query: 117 PL-----DPSRIIDTLSIARRKHPSSRND--LNSLCKRYGITI 152 PL D R+ID + +R R L LC+ Y + + Sbjct: 119 PLVDIVGDQLRVIDPRVLDKRVDKFRRGGRKLEDLCRTYSVGL 161 >gi|296314226|ref|ZP_06864167.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria polysaccharea ATCC 43768] gi|296839130|gb|EFH23068.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria polysaccharea ATCC 43768] Length = 408 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 7/109 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GI+D + D P F+ I E + + IAHN++FD F+ E R P+ Sbjct: 18 LTGISDGMVADAPIFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA 75 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++ ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 76 --LCSVQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 120 >gi|71892146|ref|YP_277878.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640967|sp|Q492U0|RNT_BLOPB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|71796252|gb|AAZ41003.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 217 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 38/192 (19%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV----FLCPNGRKN---------- 55 +V D+ET GLD+ + ++EI TF++ +LC +G N Sbjct: 20 VVVDVETAGLDANINALLEIAVA----------TFKMDEYGWLCVDGSLNFHIKSFPGAI 69 Query: 56 -SPEALKLHGI-----TDEFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFI 106 PE+L +GI + ++ + IF Q A +AHNA FD F+ Sbjct: 70 IQPESLAFNGIDLNSPLRAAVTEQEALHEIFEMVRQGIKTQGCSRAIIVAHNAFFDHSFL 129 Query: 107 NAELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 A ++R++ K+P P + DT +++ + L C G+ H AL D Sbjct: 130 MAAVERVSFMEKNPFHPFVMFDTATLSGLVF--GQTVLAKACACAGVFFDKNKAHSALYD 187 Query: 164 SHLLSDVYIKMM 175 + + ++ +++ Sbjct: 188 TERTAMLFCELV 199 >gi|91216470|ref|ZP_01253436.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC 700755] gi|91185264|gb|EAS71641.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC 700755] Length = 454 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 9/154 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+TG + I EI A+ D ++ F + P RK + L GI +E L Sbjct: 4 ILDIESTGGKYNEEGITEI-AIYKFDGNEIVDQFISLINPE-RKIQSFVVGLTGINNEML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P F I + + +AHNAKFD + E R+ L + + T+ ++ Sbjct: 62 HQAPKFYEIAKRIIEI--TEGCTIVAHNAKFDYRMLKLEFDRLG--YLYERKTLCTVKLS 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGAL 161 ++ P + L L K+ GI I+ HR+ AL Sbjct: 118 KKLLPDFESYSLGKLVKKLGIPITDRHRASGDAL 151 >gi|42519127|ref|NP_965057.1| hypothetical protein LJ1202 [Lactobacillus johnsonii NCC 533] gi|41583414|gb|AAS09023.1| hypothetical protein LJ_1202 [Lactobacillus johnsonii NCC 533] Length = 938 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 11/153 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG ++ D II+ G ++ K +T+ + P+ + P+A++ L I++E Sbjct: 12 VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKTYSFLINPH--REIPQAVENLTHISNE 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + FS + +N ++AHN FD+ F+N EL +PL + +DT+ Sbjct: 69 DVAQAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTVE 125 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160 +A+ P+ L L R + I H + H A Sbjct: 126 LAQIAFPTFPSYKLRDLTAR--LRIKHLNPHRA 156 >gi|218961823|ref|YP_001741598.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas acidaminovorans] gi|167730480|emb|CAO81392.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas acidaminovorans] Length = 960 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 10/167 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHG 64 ++ + DIETTGL+S+ D II+I + N+ F + P G+ P+ ++ L Sbjct: 21 QLEFVAIDIETTGLNSEWDEIIQIAGMRFKGEEVVNQ-FVSLVKPKGK--VPKFIEHLTH 77 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + LK P + +F +F + + + HN FD F+N + P+ Sbjct: 78 ISPQELKTAPPIKEVLKDFCNFIGD--SILVGHNIGFDFNFLNQFIVDNGGFPISNMH-W 134 Query: 125 DTLSIARRKHP-SSRNDLNSLCKRYGITI--SHRSKHGALLDSHLLS 168 DT I R P ++ + L++L +GI + +H++ AL L + Sbjct: 135 DTAEIGRIYLPFTTDHKLSTLVSFFGIELMNAHQADADALATGKLFN 181 >gi|149926803|ref|ZP_01915062.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] gi|149824355|gb|EDM83573.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] Length = 308 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 19/110 (17%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN------SPEAL 60 ++ +V D ETTGLD +IE+GAV L++ + L G +PE Sbjct: 44 VKVLVVDTETTGLDYATCEVIEVGAV-LIEVDQDTGAIGAVLGTFGGLEEPKVAITPENS 102 Query: 61 KLHGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 +HGIT+E +K D+ + ++ SE A ++AHNA FD F+ Sbjct: 103 AIHGITNEMVKGQRFDEAALKALCSE--------AALFVAHNAAFDKPFM 144 >gi|300716497|ref|YP_003741300.1| ribonuclease T [Erwinia billingiae Eb661] gi|299062333|emb|CAX59450.1| Ribonuclease T [Erwinia billingiae Eb661] Length = 215 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 15/136 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D+K + ++EI AV L +D + + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFDAKTNALLEIAAVTLKMDENGWLEKDETLHFHVEPFEGSILQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I + + + +IF + A +AHNA FD+ F NA R + Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKLVRKGIKDHGCNRAIMVAHNATFDLNFTNAAADRAGLK 139 Query: 115 KDPLDPSRIIDTLSIA 130 ++P P DT +++ Sbjct: 140 RNPFHPFVTFDTAALS 155 >gi|197124141|ref|YP_002136092.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K] gi|196173990|gb|ACG74963.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. K] Length = 200 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/176 (20%), Positives = 81/176 (46%), Gaps = 17/176 (9%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF 69 D+ET GLD++ D I+ +G + + + + + ++ + P G+ SP +++ H + Sbjct: 16 LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEQGKAVSPRSVQAHQLVAGD 75 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + P+ + + E ++A + H+A ++GF+ + + P P ++DT+ Sbjct: 76 TRGAPALAEVLPELERRL--RDAVLLVHHAPIELGFLKRAFRAAGLRWPGPP--VVDTVK 131 Query: 129 IA-------RRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + RR+ P D LN R + + H AL D+ +++++ + Sbjct: 132 LLLRLDARERRRFPELPADPPVLNLSAARRRLGLPDYQAHDALTDAVATAELFLVL 187 >gi|329667338|gb|AEB93286.1| ATP dependent helicase [Lactobacillus johnsonii DPC 6026] Length = 938 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 11/153 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG ++ D II+ G ++ K +T+ + P+ + P+A++ L I++E Sbjct: 12 VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKTYSFLINPH--REIPQAVENLTHISNE 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + FS + +N ++AHN FD+ F+N EL +PL + +DT+ Sbjct: 69 DVAQAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTVE 125 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160 +A+ P+ L L R + I H + H A Sbjct: 126 LAQIAFPTFPSYKLRDLTAR--LRIKHLNPHRA 156 >gi|298208469|ref|YP_003716648.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Croceibacter atlanticus HTCC2559] gi|83848392|gb|EAP86261.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Croceibacter atlanticus HTCC2559] Length = 457 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 7/148 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI + + ++ + L R P + L GI ++ L Sbjct: 4 ILDIETTGGKYNEEGITEIAIYKFDGHEVVDQV--ISLVNPERPIQPFVVGLTGINNDML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P F I + Q+ +AHNAKFD + E +R+ + + ++ ++ Sbjct: 62 RNAPKFYEIAKRILEI--TQDCILVAHNAKFDYRILRTEFRRLGYEY--ERETLCSVELS 117 Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSK 157 ++ P + L L K GI IS R + Sbjct: 118 KKLLPGHASYSLGKLTKALGIPISSRHR 145 >gi|145218937|ref|YP_001129646.1| exonuclease, RNase T and DNA polymerase III [Prosthecochloris vibrioformis DSM 265] gi|145205101|gb|ABP36144.1| Exonuclease, RNase T and DNA polymerase III [Chlorobium phaeovibrioides DSM 265] Length = 194 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 25/177 (14%) Query: 7 MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHG 64 M+K++ FD+ETTG+D + + II+ + +D +F++ + P+ G + EAL++ G Sbjct: 1 MKKVLWFDLETTGIDPERNGIIQFAGLAEID-GAVVESFEIKMQPHEGAQIDDEALEVTG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--------IAHNAKFDVGFINAELQRI--- 113 T E + + + + DF + + +N FD+ F++ +R Sbjct: 60 FTREAIPTFTPHAEAYRQIDDFLARHVSRFDRNDKFYPAGYNVHFDLEFLSRMFKRFDQY 119 Query: 114 ------NKDPLDPSRIIDTLS-IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 N LDP I++ + + R P+ R L + C +G+ + + H AL D Sbjct: 120 GLGSFTNWRMLDPQPILNLMDYMGRISLPNHR--LQTACDHFGVKLE--NAHDALAD 172 >gi|239994204|ref|ZP_04714728.1| ribonuclease T [Alteromonas macleodii ATCC 27126] Length = 151 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 4/88 (4%) Query: 90 QNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR 147 Q + +AHNA FD F+NA ++R N + P P DT S+A + L C+ Sbjct: 51 QRSVIVAHNATFDQSFVNAAIERCNIKRTPFHPFVSFDTTSLAGLAL--GQTVLVKACRA 108 Query: 148 YGITISHRSKHGALLDSHLLSDVYIKMM 175 GI H AL D+ ++++ M+ Sbjct: 109 AGIAFDQSEAHSALYDAQKTTELFCYMV 136 >gi|238791781|ref|ZP_04635418.1| Exodeoxyribonuclease 10 [Yersinia intermedia ATCC 29909] gi|238728885|gb|EEQ20402.1| Exodeoxyribonuclease 10 [Yersinia intermedia ATCC 29909] Length = 219 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 27/170 (15%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+E+ +++L+D + N + P+ R S +A+ +H IT+E + Sbjct: 5 IIDTETCGLAGG---IVEVASIDLVDGALAN-PMSDLISPD-RPISIDAMVIHHITEEMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP + + + + ++AHNA FD G + P + I TL +A Sbjct: 60 EGKPRIAVAIRRY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104 Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175 R +P ++ L RY + ++ + H AL D ++ + + ++M Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152 >gi|315224228|ref|ZP_07866068.1| exonuclease [Capnocytophaga ochracea F0287] gi|314945961|gb|EFS97970.1| exonuclease [Capnocytophaga ochracea F0287] Length = 258 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 5/106 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG+D DRI+EI +++ Y N+ + +L A +HGITDE + Sbjct: 12 FDLETTGIDITKDRIVEISILKV--YPNGNKESKTWLVNPTIPIPKAASDVHGITDERVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 +P+F + + + ++++ +N+ +FD+ + E+ R D Sbjct: 70 GEPTFKELAKQIHNMI--KDSDLAGYNSDRFDIPLLAEEMLRAEVD 113 >gi|126010887|ref|YP_001039857.1| putative exonuclease [Vibrio phage VP882] gi|123203897|gb|ABM73410.1| putative exonuclease [Vibrio phage VP882] Length = 206 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 22/175 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 ++ D ETTGLDSK + IIEI ++ N + P PE A ++HGIT+E Sbjct: 16 LILDTETTGLDSKAE-IIEISIID----CAGNVLLDTLVKPTA--PIPEDATRIHGITNE 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P++ ++ F + E + +NA +D+ I +R D L+ D Sbjct: 69 MVANAPTWPEVYDLFVPLV--EGRELVIYNADYDLRMIRQADER--NDLLNIRTQADCAM 124 Query: 129 IARRKHPSSRND---------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A + +D L + K+ G+ I ++ H AL D + V M Sbjct: 125 LAYAEFYGQWDDYRGQWKWQRLGNAAKQQGVVIEGKA-HRALADCQMTLGVIASM 178 >gi|253583228|ref|ZP_04860426.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium ATCC 27725] gi|251833800|gb|EES62363.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium ATCC 27725] Length = 188 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 21/187 (11%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET G+ K+ I G V++ F V P G + + EALK+ G T Sbjct: 1 MKILFIDTETGGITEKSALIQLSGIVQIGKEVAEEFNFYVKPFP-GSEVTDEALKIQGRT 59 Query: 67 DEFLKDKPSFSSIFSEFW-------DFFNEQNAEWIA-HNAKFDVGFINAELQR------ 112 E ++ S +F +F D +N+++ + +N +FD+ IN L+R Sbjct: 60 REEIEKYDSEEVVFRKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINKFLRRNGEKYL 119 Query: 113 ---INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 I LDP + I L + ++ N L + C +GI + H +L D Sbjct: 120 FSYIQATTLDPLQWIAALQLLKKIPVLKDNKLETWCNHFGIEL---KAHDSLEDIKATKA 176 Query: 170 VYIKMMV 176 + KMM+ Sbjct: 177 LTKKMML 183 >gi|229113222|ref|ZP_04242717.1| exonuclease [Bacillus cereus Rock1-15] gi|228670248|gb|EEL25596.1| exonuclease [Bacillus cereus Rock1-15] Length = 288 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 10/103 (9%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ-VFLCPNGRKNSPEALKLH 63 NK + ++ D ETTGL + D+IIEI ++L N + + P EA +H Sbjct: 127 NKDQFVILDTETTGLTLR-DQIIEISVIDLAGKILLNSLVKPTIIIP------AEATSIH 179 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 GIT+E + S+++I+ E + + + +NA+FD+G I Sbjct: 180 GITNEMIHGAQSWTTIYQELLEVTVGKTI--LIYNAEFDLGMI 220 >gi|225021962|ref|ZP_03711154.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii ATCC 33806] gi|224945248|gb|EEG26457.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii ATCC 33806] Length = 456 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/171 (22%), Positives = 83/171 (48%), Gaps = 13/171 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLHGIT 66 + D+ET D + I +IG V + D + + +LC P G + E +++HGIT Sbjct: 114 VGVDVETANADWGS--ICQIGVVRVTDGMQVDS--HEWLCQPPAGIDHFDEGNIRIHGIT 169 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P F+++F E + +Q +AHNA+FD+ + P+ + + Sbjct: 170 PDMVTDAPDFATVFPEVVAYVADQ--VLVAHNAQFDLTAFSRACHATGT-PVPHWKFACS 226 Query: 127 LSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 L+ +R K + + L + + G+ + + H A+ D+ + +++++ + Sbjct: 227 LAASRAAKLGITSHRLPVVAQHLGVELDNH--HDAVADARACAGIFVQLAL 275 >gi|224373300|ref|YP_002607672.1| DNA polymerase III PolC-type [Nautilia profundicola AmH] gi|223589694|gb|ACM93430.1| DNA polymerase III PolC-type [Nautilia profundicola AmH] Length = 255 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 10/166 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 V DIE ++IEIGAV++ + K TF+ + K+ P+ + ++ GI E Sbjct: 68 VVDIEVNNSKPNIGQVIEIGAVKIKNL-KIVDTFEFLIYA---KDVPKYVERVTGINQEM 123 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LK++ S I +F F E + ++AH A FD F+ + ++ N + +R + TL++ Sbjct: 124 LKNEASQKEILRKFRLFLGE--SVFVAHAADFDYNFLAHQFEKENLGEI-LNRFLCTLTL 180 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++ + R L L + + + + H AL D+ + +++ + Sbjct: 181 SQKTLEAERYGLKYLMEE--LKLPEETHHRALGDAKTTARIFLMCL 224 >gi|256818856|ref|YP_003140135.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea DSM 7271] gi|256580439|gb|ACU91574.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea DSM 7271] Length = 258 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 5/106 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG+D DRI+EI +++ Y N+ + +L A +HGITDE + Sbjct: 12 FDLETTGIDITKDRIVEISILKV--YPNGNKESKTWLVNPTIPIPKAASDVHGITDERVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 +P+F + + + ++++ +N+ +FD+ + E+ R D Sbjct: 70 GEPTFKELAKQIHNMI--KDSDLAGYNSDRFDIPLLAEEMLRAEVD 113 >gi|269103713|ref|ZP_06156410.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268163611|gb|EEZ42107.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 237 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 23/195 (11%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEAL 60 +++ +V D ETTG D + D I+ +G V + +D S ++ + + +K PE Sbjct: 48 SQLEYLVLDFETTGFDPEQDDILSVGFVTISQQRIDLSTAT---ELLIKDSQQKVKPETA 104 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLD 119 ++ IT E L + FN + +AH A + F+N L + P Sbjct: 105 IINHITTEKLAHGVELDCAMAA---LFNAMKGKIMVAHGAMIEQRFLNHYLATRYQLPPL 161 Query: 120 PSRIIDT------LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P +DT LSI R++ ++ L + +R+G + HGA++D+ +++ + Sbjct: 162 PIIWLDTLTIEKSLSIHRQQLKANDYRLAQIRQRHG--LPAYPAHGAVIDAIATAELLLV 219 Query: 174 MMVGGSQINFGFKTN 188 + V FG KT Sbjct: 220 LQVAC----FGKKTG 230 >gi|67459827|ref|YP_247450.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2] gi|67005360|gb|AAY62285.1| DNA polymerase III, epsilon subunit-like protein [Rickettsia felis URRWXCal2] Length = 377 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 15/165 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-----KLHG 64 I D ETTGL + D+I+E+G V+ +Y++ R +Q+ N ++ + + +L G Sbjct: 126 IFLDTETTGLSHEKDKILELGMVK-FEYTEDGRIYQIVDELNQYQDPQQPIPLRITELTG 184 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITDE ++ K +I E F E IAHNA FD F + + SR Sbjct: 185 ITDEMVQGK----AIDQEAVTQFLENVDIIIAHNASFDRPFFDKMFLHLPPKAWGCSRA- 239 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHLLS 168 I + + L L +Y HR+ L HLL+ Sbjct: 240 ---DIDWKAEKIESHKLEYLAYKYNFFYEGHRAVTDCLAGLHLLA 281 >gi|314933639|ref|ZP_07841004.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus caprae C87] gi|313653789|gb|EFS17546.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus caprae C87] Length = 900 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 18/165 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ETTG D II+IG + + K T+ + + P L I ++ L Sbjct: 8 VVDLETTGNQLDYDEIIQIG-ITFVSNHKIIDTYHS-MIRTDLEIPPFIQALTSIEEDML 65 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-----NAELQRINKDPLDPSRIID 125 P F+ + + +D ++ ++AHN FD+ FI N ++Q P +++D Sbjct: 66 AQAPYFNEVAEDIYD--QIKDCIFVAHNISFDLNFIKNAFNNCDIQ------FKPKKVMD 117 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 TL + + P+ ++ L+ L + + I + +HR+ A + L+ Sbjct: 118 TLELFKIAFPTDKSYQLSELAQAHDIPLDKAHRADEDATTTAKLM 162 >gi|300173471|ref|YP_003772637.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811] gi|299887850|emb|CBL91818.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811] Length = 801 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 9/174 (5%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG +K RII+IG + + + F+ F+ P G+ +L I + Sbjct: 8 VVVDLETTGQSVTKGGRIIQIG-MTFIKQRQIVDHFESFVNP-GQLIDRNIQQLTHIAQK 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ P F + + N N IAHN FD ++N E +R L S IDT+ Sbjct: 66 DVKNAPYFEELAPMLQNLLN--NTIIIAHNVNFDYPYLNDEFRRTGFPELT-SSAIDTVQ 122 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +A+ P++ L L IT++ + H A D+H + +++K+ Q+ Sbjct: 123 LAQILLPTAPGYRLVDLTTYLDITLN--NAHRANADAHATARLFLKLWQRAEQL 174 >gi|307721509|ref|YP_003892649.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] gi|306979602|gb|ADN09637.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] Length = 233 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 78/175 (44%), Gaps = 30/175 (17%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I DIETTGL++ + + + LL K L G+K P A +H IT+E Sbjct: 3 IFTDIETTGLEADD----VMCGIALLSEDKVMYE----LLNEGKKIPPLASSIHHITNEM 54 Query: 70 LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++DK F I SE DF + N IAHN KFD+ + A D IIDT Sbjct: 55 IQDKKLF--IQSEVHDFLEQNNNPKNTLIAHNIKFDLEKLAAAGLHWQGD------IIDT 106 Query: 127 LSIARRKHPSSRNDLNSL-CKRYGITISH-----RSKHG---ALLDSHLLSDVYI 172 L + KH +L SL RY + + + K+G AL LSDV + Sbjct: 107 LKVT--KHLIKECELFSLEFLRYELKLYMQENEIKQKYGIKDALCTDKALSDVLV 159 >gi|305681196|ref|ZP_07404003.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] gi|305659401|gb|EFM48901.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] Length = 444 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/171 (22%), Positives = 83/171 (48%), Gaps = 13/171 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLHGIT 66 + D+ET D + I +IG V + D + + +LC P G + E +++HGIT Sbjct: 102 VGVDVETANADWGS--ICQIGVVRVTDGMQVDS--HEWLCRPPAGIDHFDEGNIRIHGIT 157 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P F+++F E + +Q +AHNA+FD+ + P+ + + Sbjct: 158 PDMVTDAPDFAAVFPEVVAYVADQ--VLVAHNAQFDLTAFSRACHATGT-PVPHWKFACS 214 Query: 127 LSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 L+ +R K + + L + + G+ + + H A+ D+ + +++++ + Sbjct: 215 LAASRAAKLGITSHRLPVVAQHLGVELDNH--HDAVADARACAGIFVQLAL 263 >gi|330860723|emb|CBX71015.1| exodeoxyribonuclease 10 [Yersinia enterocolitica W22703] Length = 220 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 27/170 (15%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL+ I+EI +++++D + +N + P+ R S +A+ +H IT+E + Sbjct: 5 VIDTETCGLEGG---IVEIASIDVMDGALSN-PMSDLVSPD-RPISLDAMVIHHITEEMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP + ++ + + ++AHNA FD G + P + I L +A Sbjct: 60 EGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICMLKLA 104 Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175 R +P ++ L RY + ++ + H AL D ++ + + ++M Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152 >gi|325271798|ref|ZP_08138267.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] gi|324103069|gb|EGC00447.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] Length = 201 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 7/111 (6%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 R V D ETTG+ R E+ AV +L+ + +Q + N P L GI Sbjct: 3 RIAVIDFETTGISPGAGCRATEV-AVVMLEGGRIVERYQSLM--NAGVPVPAFVAGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 T L+ P + +E +F E +AHNA FD F + EL RI + Sbjct: 60 TTAMLRSAPPVDKVMNEVAEFVGET--PLLAHNAAFDQKFWDYELARIGRS 108 >gi|254818513|ref|ZP_05223514.1| DNA polymerase III subunit epsilon [Mycobacterium intracellulare ATCC 13950] Length = 330 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G RII + + L + ++ L P P +HG+T L Sbjct: 19 VIDVETSGFRPGQARIISLAVLGLDADGEVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLSI 129 +D+P F+ I + D + +AHN FD F+ AE + + + P+D ++ T+ + Sbjct: 76 EDQPQFADIAPDVIDVLRGRT--LVAHNVAFDYAFLAAEAELADIELPVD--SVMCTVEL 131 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L + +T H A D+ +L+ V + Sbjct: 132 ARRLDLGVDNLRLETLAAHWSVT--QERPHDAFDDAMVLTGVLASAL 176 >gi|258511618|ref|YP_003185052.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478344|gb|ACV58663.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 952 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 18/169 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 M I+ D+ETTGLD + I+EIGA+ E++D TF + P R E + Sbjct: 1 MEWIIVDLETTGLDPERAEILEIGALRVRGGEIVD------TFHTLVRPE-RPIPDEITR 53 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G++D + PS F F + H+ F+ F+ + R PL P Sbjct: 54 LTGLSDADVAGAPSEREALMRFAGF--AGHTPMAGHHWVFERSFLLHRVARYGL-PLQPG 110 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGI--TISHRSKHGALLDSHLL 167 + TLS+AR P + L L +R + +SHR+ A LL Sbjct: 111 DGLCTLSLARILAPRLMSHRLEYLARRLRLRAEVSHRALADARTAHQLL 159 >gi|269216510|ref|ZP_06160364.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122] gi|269130039|gb|EEZ61121.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122] Length = 1045 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 9/149 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG +D + +I A + + F F+ P G+ E +L I DE Sbjct: 58 VVLDTETTGFSQNHDELTQIAAARM-KQGRIVEWFVTFVNP-GKPIPEEVARLTDIHDED 115 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D PS + F + +AHNA FD GF + PL + ID+L + Sbjct: 116 VADAPSPDDARIQLAAFVGDSCI--VAHNAAFDKGFCT---KSQGGAPLSDNLWIDSLDL 170 Query: 130 ARRKHPSSRND-LNSLCKRYGITIS-HRS 156 AR P ++ L + K + +S HR+ Sbjct: 171 ARIALPRLKSHRLIDIVKAFDAPVSTHRA 199 >gi|119504386|ref|ZP_01626466.1| ribonuclease T [marine gamma proteobacterium HTCC2080] gi|119459894|gb|EAW40989.1| ribonuclease T [marine gamma proteobacterium HTCC2080] Length = 216 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 28/194 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ D+ET G ++ D ++E+ A E++ + + F G AL+ Sbjct: 19 VIVDVETGGFNAATDALLEVAATLIHVDDRGEVVLGDTISFNVEPF---EGANIEASALE 75 Query: 62 LHGITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR- 112 GI E L + + +F+ + A + HNA FD GFIN+ R Sbjct: 76 FTGIDPENPLRAALPEAIALGDLFTRIRKEVRDTGCNRAILVGHNAHFDAGFINSASLRC 135 Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I ++P P DT ++A L C+R GI ++ H A D+ ++++ Sbjct: 136 DIKRNPFHPFSHFDTATLAGLAF--GHTVLAQACRRAGIEFNNSEAHSAAYDATKTAELF 193 Query: 172 IKMM-----VGGSQ 180 ++ +GG Q Sbjct: 194 CCIVNQWQRLGGWQ 207 >gi|163787973|ref|ZP_02182419.1| DNA Pol III Epsilon Chain [Flavobacteriales bacterium ALC-1] gi|159876293|gb|EDP70351.1| DNA Pol III Epsilon Chain [Flavobacteriales bacterium ALC-1] Length = 258 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 27/117 (23%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS------------PEA 59 FD+ETTG++ DRI+EI ++ + PNG++N+ E Sbjct: 12 FDLETTGINISKDRIVEISILK--------------VHPNGKENTKTWVVNPEMPIPAEV 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 +HGI+D + DKP+F + E ++ + + N +FD+ + E+ R + D Sbjct: 58 TAIHGISDADVADKPTFKELSKEIYNLIKDSDLGGFNSN-RFDIPLLAEEMLRADID 113 >gi|227548071|ref|ZP_03978120.1| DNA polymerase III, epsilon subunit [Corynebacterium lipophiloflavum DSM 44291] gi|227079869|gb|EEI17832.1| DNA polymerase III, epsilon subunit [Corynebacterium lipophiloflavum DSM 44291] Length = 188 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 18/176 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL + D+++ IG V + D F+ + + LHG+TD+ Sbjct: 17 LAVDVETTGLKPERDQLVSIGWVPVNDRVIDLSGAAHFVVAGASVGN--SATLHGVTDD- 73 Query: 70 LKDKPSFSSIFSEFWDFFNEQNA--EWIAHNAKFDVGFINAELQRI--NKDPLDPSRIID 125 D + + +E + F A + +AH A+ ++GFI +++ + L ++D Sbjct: 74 --DVLASGTDIAEIVEHFERAIAGRKLLAHFAQMELGFIGHAFKQVRGTRWRLREDEVVD 131 Query: 126 TLSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T ++ RR +P + L + +RYG+ ++R+ H AL D+ +++Y+ + Sbjct: 132 TFALERRHMERMATYPRGEDLRLARVRQRYGLP-AYRN-HNALTDAVACAELYLAL 185 >gi|325676987|ref|ZP_08156658.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707] gi|325552149|gb|EGD21840.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707] Length = 228 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 12/165 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETTG D + RI+ V + +R ++ G + +A +HGI+ Sbjct: 11 AFDLETTGRDPLSARIVTGSVVTVGGEGHRSRN---WIVDPGVEIPVDAAAVHGISTAQA 67 Query: 71 KDKPS-FSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 +++ ++S + E + A +A NA +D+ ++AE +R+ PL ++D Sbjct: 68 RERGQDYASGYREIRSALTDAWAAGHVVVAFNAAYDLTVLDAEGRRLGWPPLSGYGLVVD 127 Query: 126 TLSIARRKHPSSRN--DLNSLCKRYGITI--SHRSKHGALLDSHL 166 I R R L +LC+ YG+ + +H ++ AL + L Sbjct: 128 PYVIDREMDRDRRGKRTLGALCEHYGVVLAAAHEAESDALAAAEL 172 >gi|325285402|ref|YP_004261192.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM 7489] gi|324320856|gb|ADY28321.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM 7489] Length = 258 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 58/106 (54%), Gaps = 5/106 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG++ DR++EI +++ Y N+ + +L E + +HGI++E + Sbjct: 12 FDLETTGINVAKDRVVEISILKV--YPNGNKESKTWLVNPEMHIPDEVVAVHGISNEKVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 ++P+F+ + E + ++ + +N+ +FD+ + E+ R D Sbjct: 70 NEPTFAQLSKEIYAMI--KDCDLGGYNSDRFDIPLLAEEMLRAGVD 113 >gi|282864742|ref|ZP_06273796.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE] gi|282560167|gb|EFB65715.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE] Length = 243 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 25/166 (15%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 ++ R FD+ETTG D RI+ V + + +L G + +A +HG Sbjct: 4 HRERLAGFDLETTGTDPLEARIVTAAVVAVESSGGEAAGCRTWLADPGVRIPEQASAIHG 63 Query: 65 ITDE--FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL------ 110 I+ E + +P + I E W +A+NA FD+ ++AEL Sbjct: 64 ISSERAAAEGRPVREVADEIAGILVEHW----RAGVPVVAYNAAFDLTLLSAELRRHGLP 119 Query: 111 ---QRINKDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGIT 151 +R+ + P +ID +I R ++ + L ++C Y + Sbjct: 120 SLSERLGGAGIGP--VIDPYTIDRAVDRYRKGKRTLEAVCVEYDVV 163 >gi|126011010|ref|YP_001039760.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia ambifaria phage BcepF1] gi|119712586|gb|ABL96807.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia ambifaria phage BcepF1] Length = 197 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 74/183 (40%), Gaps = 26/183 (14%) Query: 11 VFDIETTGLDS-------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 VFD ETTGL S + RIIE + + D T + F C G K+ Sbjct: 5 VFDTETTGLPSHPLAPLDRQPRIIEFAGI-VTDGRDILHTLE-FRCNPGVALEEIITKIT 62 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEW----------IAHNAKFDVGFINAELQRI 113 G+TD L+D+P S F E FF ++ +AHN FD ++ +L+R Sbjct: 63 GLTDADLRDQPDISHFFGELKSFFGKEPMPHVFGEKPKFARVAHNLSFDRNLLDYDLKRR 122 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 K LD D L I + + + L L R + KH AL D L D Sbjct: 123 GKT-LDDIGFNDALMICTVEQTTPQFGRPMKLQELWSRARGEFTQ--KHRALDDVMRLHD 179 Query: 170 VYI 172 V I Sbjct: 180 VCI 182 >gi|319760755|ref|YP_004124692.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC] gi|317115316|gb|ADU97804.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC] Length = 209 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 8/148 (5%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ ++ R E+ A+ L++ + F + G P +L GIT+ Sbjct: 7 VIDFETTGMTPAQGARATEV-AIVLMEGERVVDRFASLM-KTGVWIPPFITRLTGITNAM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+ + E F +A +AHNA FD F +EL+ D P T+ + Sbjct: 65 VDAAPAAEPVMREAARFVG--DAPMVAHNAAFDSRFWQSELRHAGLD--APHPFACTVLL 120 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRS 156 +RR +P + + L L G+ + R+ Sbjct: 121 SRRIYPDAPSHSLGRLTDHLGLPRTGRA 148 >gi|152992740|ref|YP_001358461.1| DNA polymerase III subunit epsilon [Sulfurovum sp. NBC37-1] gi|151424601|dbj|BAF72104.1| DNA polymerase III, epsilon subunit [Sulfurovum sp. NBC37-1] Length = 206 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 9/170 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGLD K D I+ IGAV++ + T+ +++ ++ S E++ +H I Sbjct: 32 VVFDCETTGLDPKKDGIVSIGAVKIKENRILTDEAMHIYV-KQEKQISHESITIHQIRHC 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D EF F + + +FDV IN ++ + L P++ + + Sbjct: 91 DLEDAVPIEEAIEEFLYFIGGRT--LAGYYLEFDVAMINKYIKPMYGITL-PNKQEEVSA 147 Query: 129 IARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I K P DL +++ H AL D+ + + +Y+K+ Sbjct: 148 IYYDKKISTIPQGNIDLRFETIIEDLSLPKLQAHDALNDAVMTAMIYLKL 197 >gi|149372305|ref|ZP_01891493.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] gi|149354695|gb|EDM43258.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] Length = 460 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 9/157 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + DIETTG + I EI A+ D K F + P R P + L GI Sbjct: 1 MNYAILDIETTGGKYNEEGITEI-AIYRFDGEKVVDQFCSLVNPE-RPIQPFVVNLTGIN 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + LK+ P F + + ++ +AHNA+FD + E R+ D D + T Sbjct: 59 SDMLKNAPKFYEVAKRIVEI--TKDCILVAHNAQFDNRILTTEFDRLGYD-FDLETLC-T 114 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGA 160 + ++++ P + L L + GI I+ HR++ A Sbjct: 115 VELSKKLIPDMPSYSLGKLVRSLGIPITDRHRAQGDA 151 >gi|289167702|ref|YP_003445971.1| ATP-dependent helicase DinG [Streptococcus mitis B6] gi|288907269|emb|CBJ22104.1| ATP-dependent helicase DinG [Streptococcus mitis B6] Length = 816 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 20/171 (11%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH---- 63 R +V D+E T SK +II++G V + D + N E L H Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGKIVDHY-------TSDVNPHEPLDAHIKEL 58 Query: 64 -GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 G+TD+ L P FS + + +D ++ ++AHN +FD + L + +P Sbjct: 59 TGLTDKRLAQAPDFSQVARKIFDLV--KDGIFVAHNVQFDANLLAENLFFEGYELRNPR- 115 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +DT+ +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 116 -VDTVELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|119962878|ref|YP_948455.1| DNA polymerase III subunit epsilon [Arthrobacter aurescens TC1] gi|119949737|gb|ABM08648.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens TC1] Length = 236 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 11/176 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M N + + FD+ETTG +S++ RI+ ++ ++D +L G + EA Sbjct: 1 MSSWNTLSRAAFDLETTGKNSRSARIV-TASITVVDAHGGLIAEHEWLADPGVEIPLEAS 59 Query: 61 KLHGITDEFLK--DKPSFS---SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 ++HG+T E + +P+ + F++ IA NA +D + AE R Sbjct: 60 EVHGVTTEKARAEGRPAAEVTREVAGVLQGLFDD-GTPVIAFNASYDFTVLAAESARYGV 118 Query: 116 DPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHLL 167 L ++D + ++ ++ + L +LC+ YG+ T +H S AL +L Sbjct: 119 PQLSRFPVLDPYVMNKQMDRYRKGKRTLTALCEEYGVDLTNAHTSAADALATLRVL 174 >gi|111022071|ref|YP_705043.1| DNA polymerase III subunit epsilon [Rhodococcus jostii RHA1] gi|110821601|gb|ABG96885.1| DNA polymerase [Rhodococcus jostii RHA1] Length = 231 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV---FLCPNGRKNSPEALKLHGIT 66 FD+ETTG D + RI+ + + +RT+ + P G A +HGI+ Sbjct: 10 CAFDLETTGPDPTDARIVSACIAVVDAHHFESRTWLLDPEVPIPQG------ASDVHGIS 63 Query: 67 DEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 E+ + + I D + +A +A NA +D+ ++ E R+ L Sbjct: 64 TEYARAHGQDYATGYGEIREALHDAWTRDHAV-VAFNASYDLTVMHTEGLRLGLAELVTG 122 Query: 122 RIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 ++D I R +H R L ++C+ YGI + Sbjct: 123 IVVDPYVIDREMDRHRKGRRTLGAVCEHYGIAL 155 >gi|149276274|ref|ZP_01882418.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39] gi|149232794|gb|EDM38169.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39] Length = 334 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 9/108 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKL-HGITDEF 69 FD+ETTG++ +DRI+EI ++ + D ++ +T ++ N P A L HGI DE Sbjct: 12 FDLETTGVNVGSDRIVEIAILKAMPDGTELIKTLRI----NPEMPIPLASSLIHGIYDEH 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 + +P+F ++ +E +F + A+ +N+ +FD+ + E R D Sbjct: 68 IAAEPTFKAVAAEVAEFIGD--ADLAGYNSNRFDIPVLLEEFLRAGVD 113 >gi|327313911|ref|YP_004329348.1| exonuclease [Prevotella denticola F0289] gi|326945021|gb|AEA20906.1| exonuclease [Prevotella denticola F0289] Length = 163 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 9/153 (5%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D ET + + + +G V ++ + TF + P ++HG+T E D Sbjct: 8 DFETANFERSS--VCSVGVV-IVRGGEVADTFYSLVHPEPNYYQWRCTQVHGLTREDTDD 64 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P FS +++ + +AHNA FD G + A Q D D +DTL ARR Sbjct: 65 APVFSKVWARIEPLI--EGLPLVAHNAPFDKGCLRACFQTYRMDYPD-YEFLDTLRAARR 121 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 P S + L+++ G +S H AL D+ Sbjct: 122 VFPRLSNHQLHTVSAACGYDLS--RHHHALADA 152 >gi|195977857|ref|YP_002123101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974562|gb|ACG62088.1| probable ATP-dependent helicase DinG [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 821 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI + + V D+E T II++G V +++ + ++Q + P+ S Sbjct: 1 MINEFSQKYAVIDLEATS-PGPTASIIQVGIV-IIEGKEIVDSYQTDVNPH-EPLSDHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS + ++ ++ ++AHN FD + L D L P Sbjct: 58 ALTGITDQQLAQAPDFSQVARTIFELI--EDCVFVAHNVTFDANLLAEALFLEGYDLLTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ +PS + L+ L + + +S H A+ D+ ++++IK++ Sbjct: 116 R--VDTVELAQIFYPSLEKYSLSHLSEVLDLNLS--DAHTAIADAQATANLFIKLL 167 >gi|172040446|ref|YP_001800160.1| hypothetical protein cur_0766 [Corynebacterium urealyticum DSM 7109] gi|171851750|emb|CAQ04726.1| hypothetical protein cu0766 [Corynebacterium urealyticum DSM 7109] Length = 239 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 26/183 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---------LDYSKTNRTFQVF-LCPNGRKNSPEA 59 + D+ETTGLD K D I+ IG V + DY+ + +V P G E+ Sbjct: 44 LAVDVETTGLDPKKDLILSIGWVPMTGGRIFPAEADYAVIHHEPEVVERVPAGM----ES 99 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGIT ++ + S + + H + + F+ ++ L Sbjct: 100 AKIHGITHTDIEAGEPLRDVLSRL--LLALRGRAMVVHFSPIETQFLGQACRQHFGSGLS 157 Query: 120 PSRIIDTLSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S +IDT +I RR +P + L + +RYG + H H AL D+ ++ + Sbjct: 158 VS-VIDTFAIERRYFERMATYPRGEDLRLPRVRERYG--LPHYGSHNALSDALACGELLL 214 Query: 173 KMM 175 M+ Sbjct: 215 AML 217 >gi|88812259|ref|ZP_01127510.1| putative DNA polymerase III epsilon chain [Nitrococcus mobilis Nb-231] gi|88790510|gb|EAR21626.1| putative DNA polymerase III epsilon chain [Nitrococcus mobilis Nb-231] Length = 186 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + + G D R++EIG VE+ D T R+F + P GR AL+ G++ E Sbjct: 5 LALEAVVVGDDPTTSRVVEIGCVEMHDDHPTGRSFHSYANP-GRDLDVAALQAKGLSTEA 63 Query: 70 LKDKPSFSSI 79 L DKP F I Sbjct: 64 LADKPRFGDI 73 >gi|223933999|ref|ZP_03625955.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis 89/1591] gi|223897336|gb|EEF63741.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis 89/1591] Length = 822 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 22/169 (13%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61 R V D+E TG + + +II+IG V E++D Y+ ++ L + KN Sbjct: 12 RYAVVDLEATGTGT-DAKIIQIGIVLVENGEIIDSYATDINPYE--LLDDHIKN------ 62 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L P F + S +D +A ++AHN KFD + L + L P Sbjct: 63 LTGITDQQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTPR 120 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCK--RYGITISHRSKHGALLDSHLL 167 +DT+ +++ P+ + L +L + G+ +H + AL + LL Sbjct: 121 --VDTVELSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDALATARLL 167 >gi|164686248|ref|ZP_02210278.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM 16795] gi|164601850|gb|EDQ95315.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM 16795] Length = 174 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 7/156 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + N + IV D+ETTGLD + I + + +K R + + P G S Sbjct: 1 MNKYNDDKYIVVDLETTGLDPFSGCEIIEIGITEIVNNKIGRNYSRLVKPKGIIPS-HIT 59 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + IT++ ++D S ++ F + + IAHNAKFD+ F+N L + + ++ Sbjct: 60 NITSITNDMVEDAESLETVLPNFRKYVGD--TTIIAHNAKFDLKFLNYYLDLLGLEKINN 117 Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISH 154 I TL + +R + L + C Y I H Sbjct: 118 H--ICTLEMLKRCKSYKGKNKKLETACNYYNIVNEH 151 >gi|259502770|ref|ZP_05745672.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus antri DSM 16041] gi|259169273|gb|EEW53768.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus antri DSM 16041] Length = 178 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 5/114 (4%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI + + + P+F ++ F+ IAHN +FD G + + L+ +P Sbjct: 50 VQIHGIHERDVANAPTFPEVWEHIKGFYTPDKLV-IAHNNRFDNGVLKSTLEHYGIEP-P 107 Query: 120 PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + +DT+ +RR P N LN++C I + H H AL D+ +++ + Sbjct: 108 AYQTLDTVVSSRRLLPGLSNYKLNTVCAALNIDLHHH--HNALDDAQACANILL 159 >gi|323466410|gb|ADX70097.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus H10] Length = 927 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 15/170 (8%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG K II+ G ++ K +T+ + P+ R+ + L GI +E Sbjct: 12 VVDLETTGTQREKGHHIIQFGCA-IIKNMKVVKTYSFMINPH-REIPQSVVNLTGIHNED 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ + FS + + + ++AHN FD+ F+N EL + + L ++ IDT+ + Sbjct: 70 VQGEDDFSVYAPKIIEIL--KGTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126 Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ P+ +DL + K I H + H A D++ + + IK++ Sbjct: 127 AKIAFPTLPSYKLSDLTAQLK-----IKHLNPHKADSDAYGTAVLLIKII 171 >gi|291067016|gb|ADD74132.1| DNA polymerase III epsilon subunit-like protein [Rickettsia felis] Length = 377 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-----KLHG 64 I D ETTGL + D+I+E+G V+ +Y++ R +Q+ N ++ + + +L G Sbjct: 126 IFLDTETTGLSHEKDKILELGMVK-FEYTEDGRIYQIVDELNQYQDPQQPIPLRITELTG 184 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE ++ K +I E F E+ IAHNA FD F + Sbjct: 185 ITDEMVQGK----AIDQEAVTQFLEEVDIIIAHNAAFDRPFFD 223 >gi|332185524|ref|ZP_08387272.1| exonuclease family protein [Sphingomonas sp. S17] gi|332014502|gb|EGI56559.1| exonuclease family protein [Sphingomonas sp. S17] Length = 191 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 28/175 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIG------AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ET S+ I +IG VE+L Y F N + +H Sbjct: 7 VVIDVETAC--SRTSSICQIGIVGYAAGVEVLAYETLVDPCDDFSSFN--------IGIH 56 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121 GIT + + KP+F+++ E + +AH+ FD G + +R D L P + Sbjct: 57 GITADHVLGKPTFAALHPELAMHLGGRVT--VAHSG-FDKGALGRACER---DALPPIAA 110 Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +D+++IARR P N LN+L + + HR H AL D+ V ++ M Sbjct: 111 RWLDSVTIARRAWPELPNHKLNTLAAF--LELEHR-HHDALSDARAAGQVVLRAM 162 >gi|157370180|ref|YP_001478169.1| exodeoxyribonuclease X [Serratia proteamaculans 568] gi|157321944|gb|ABV41041.1| Exonuclease RNase T and DNA polymerase III [Serratia proteamaculans 568] Length = 222 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 23/163 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL+ ++E+ +V+L+D N + P+ R EA+ +H IT++ + Sbjct: 5 VIDTETCGLEGG---VVEVASVDLIDGQIAN-PMSDLISPD-RPIGIEAMAIHHITEQMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP + + + + ++AHNA FD G + P I T+ +A Sbjct: 60 EGKPRIAVAIGRY-----QGSPYYVAHNAAFDRGVL----------PEMHGAWICTMKLA 104 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH-LLSDVYI 172 R +P + L RY + + + L H L D Y+ Sbjct: 105 RNLYPDIKYGNQYL--RYALNLDVQLPQDTTLYPHRALYDCYV 145 >gi|237785374|ref|YP_002906079.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM 44385] gi|237758286|gb|ACR17536.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM 44385] Length = 555 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 11/170 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKN-SPEALKLHGIT 66 I FD+ET + N I + G V + + +LC P+ + +P +HGIT Sbjct: 224 IAFDVETA--NEANGSICQFGVV--VYHEGKEAESHTWLCQPPSAWPDFTPATTAIHGIT 279 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + ++PS + ++N +AHNAKFD+ + + R K + T Sbjct: 280 PDKVANEPSCHDRLEQLAALLRKENLPIVAHNAKFDMVALR-DAARAEKVDIPHITFACT 338 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR HP N L ++ + G H H AL D+ ++ + + Sbjct: 339 YLLARALHPELPNYKLTTVAQSAGSEAFHH--HDALADARACGEIMLSLC 386 >gi|225870177|ref|YP_002746124.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] gi|225699581|emb|CAW93205.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] Length = 823 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI + + V D+E T II++G V +++ + ++Q + P+ S Sbjct: 1 MINEFSQKYAVIDLEATS-PGPTASIIQVGIV-IVEGKEIVDSYQTDINPH-EPLSDHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS + ++ ++ ++AHN FD + L D L P Sbjct: 58 ALTGITDQQLAQAPDFSQVARTIFELI--EDCVFVAHNVTFDANLLAEALFLEGYDLLTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ +PS + L+ L + + +S H A+ D+ ++++IK++ Sbjct: 116 R--VDTVELAQIFYPSLEKYSLSHLSEVLDLNLS--DAHTAIADAQATANLFIKLL 167 >gi|254227511|ref|ZP_04920943.1| exonuclease family [Vibrio sp. Ex25] gi|262396223|ref|YP_003288076.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|151940123|gb|EDN58949.1| exonuclease family [Vibrio sp. Ex25] gi|262339817|gb|ACY53611.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] Length = 236 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 12/166 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTG+D++ D+I+ IG V+L LD + + ++C +G+ PE K++G+T + Sbjct: 53 VALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYIC-HGQFIKPETAKINGLTPQ 111 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + +AH + FI+A + P+ IDTL Sbjct: 112 DLAKGLPLDEGMNRLLERITGKVV--LAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQ 169 Query: 129 I------ARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166 I A + S L+ L + Y + +SH + AL + L Sbjct: 170 IEKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAEL 215 >gi|148244632|ref|YP_001219326.1| ribonuclease T [Candidatus Vesicomyosocius okutanii HA] gi|146326459|dbj|BAF61602.1| ribonuclease T [Candidatus Vesicomyosocius okutanii HA] Length = 193 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 25/194 (12%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD-----YSKTNRTFQV--FLC 49 M+ K+++R +V DIET G + K D ++EI + + +D Y K + F + F Sbjct: 1 MLIKDRIRGYLPVVIDIETGGFNEKTDAMLEICTIIIGIDKMNNLYPKKPQHFHIEPF-- 58 Query: 50 PNGRKNSPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKF 101 G P A+K + I + +K+ + I+++ + +++ A + HNA F Sbjct: 59 -KGSILEPSAIKFNSIDVDNPFRMAVKEVDAIKQIYTKVYTELKQKDCTRAILVGHNAFF 117 Query: 102 DVGFINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 D+GF+ A R K P +DT+S++ + + L ++ I H A Sbjct: 118 DLGFLRAATNRCKLKSPFHQFSTLDTVSLSALCYGETV--LAKAIRKADIEWDDTCAHSA 175 Query: 161 LLDSHLLSDVYIKM 174 L D+ ++++ K+ Sbjct: 176 LYDTQKTAELFCKV 189 >gi|256822949|ref|YP_003146912.1| ribonuclease T [Kangiella koreensis DSM 16069] gi|256796488|gb|ACV27144.1| ribonuclease T [Kangiella koreensis DSM 16069] Length = 200 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEALKLH 63 ++ D+ET G ++ D ++E+ AV +++ + ++ + P G +AL Sbjct: 16 VIIDVETGGFNAATDALLELAAVTT-GFNEQGKLEIKNSYHFNVEPFEGANIEQKALDFT 74 Query: 64 GI-TDEFLKDKPS-FSSIFSEFWDFFNEQ-NAEW-----IAHNAKFDVGFINAELQRIN- 114 GI D L+ S ++ S F D EQ +AE + HN+ FD+ F+NA +R++ Sbjct: 75 GIDPDNPLRGAISEHKALKSLFKDLRTEQKDAECNRCVLVGHNSWFDLSFLNAASERVDI 134 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT S++ L C GI S + H AL D+ ++++ Sbjct: 135 KRNPFHPFTSFDTASLSALM--LGHTVLAQACDLAGIEFSQKEAHSALYDATKTAELFCL 192 Query: 174 MM 175 ++ Sbjct: 193 LV 194 >gi|300741873|ref|ZP_07071894.1| putative DNA polymerase III epsilon subunit [Rothia dentocariosa M567] gi|300381058|gb|EFJ77620.1| putative DNA polymerase III epsilon subunit [Rothia dentocariosa M567] Length = 230 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 21/174 (12%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG+D RI+ ++ LL+ + + +L G + A +HGIT E Sbjct: 8 RATFDLETTGVDVTTARIV-TASLLLLNPDGSVQRAGEWLANPGIEIPEGAASVHGITTE 66 Query: 69 FLKD--KPS-------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDP 117 + + +P+ +I S F D IA NA +D ++ E+ R N Sbjct: 67 YARSHGQPAQQVIWEVAGAIGSLFLDGIPV-----IAFNAAYDFSVLHHEMLRYNIAHGE 121 Query: 118 LDPSRIIDTLSIARRKHPSSRND--LNSLCKRYGITI--SHRSKHGALLDSHLL 167 L I+D I + P R + L +L +G+ + +H SK AL LL Sbjct: 122 LPAGHILDPYVIHKHVIPRKRGNRKLETLTAEHGVVLENAHTSKADALAAERLL 175 >gi|153838933|ref|ZP_01991600.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] gi|149747604|gb|EDM58532.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] Length = 236 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 12/166 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTG+D++ D+I+ IG V+L LD + + ++C +G+ PE K++G+T + Sbjct: 53 VALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYIC-HGQFIKPETAKINGLTPQ 111 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + +AH + FI+A + P+ IDTL Sbjct: 112 DLAKGLPLDEGMNRLLERITGKVV--LAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQ 169 Query: 129 I------ARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166 I A + S L+ L + Y + +SH + AL + L Sbjct: 170 IEKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAEL 215 >gi|217972890|ref|YP_002357641.1| exonuclease RNase T and DNA polymerase III [Shewanella baltica OS223] gi|217498025|gb|ACK46218.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS223] Length = 228 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 29/186 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D+E TGL+ + D+I+ IG V E+ + Q+ R + ++ +HG Sbjct: 43 VAMDLEMTGLNPQQDQILSIGLVPIERGEIPLARAEQKLVQI------RGSVGQSATIHG 96 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLD-PSR 122 I D L + W F N+ +AH A D F+ +L I L P+ Sbjct: 97 ILDNHLVQAVTIEEAMG--W-FINQTYGRVLVAHYAPLDCRFLQQDLLAIYHQALILPA- 152 Query: 123 IIDTLSIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDTL + R R+H + L + +RYG+ I + H AL D+ ++ + M Sbjct: 153 -IDTLMLERHRLLREHSVIKEGSLRLGACRERYGLPIY--TAHSALTDALACGELLLAQM 209 Query: 176 --VGGS 179 +GG+ Sbjct: 210 AAMGGA 215 >gi|330685586|gb|EGG97232.1| exonuclease [Staphylococcus epidermidis VCU121] Length = 184 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 9/155 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + K I +G V++++ ++ +F + PN S + + +HGI E Sbjct: 7 VALDFETA--NGKRTSICSVGMVKVIE-NQITESFHTLVNPNDYF-SEQNISVHGIHPED 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+FS ++ F ++ +AHNA FD+ ++ +Q I + + + + Sbjct: 63 VASSPNFSYVYPYMMQFIDQ--LPVVAHNAAFDMNVLHQSIQAIGLETPHLTYFC-SYQL 119 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A+R S R L + Y + H AL D+ Sbjct: 120 AKRTVQSHRYGLKHMMDYYQLDF--HGHHDALNDA 152 >gi|319399859|gb|EFV88106.1| exonuclease family protein [Staphylococcus epidermidis FRI909] Length = 184 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 11/156 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + K I +G V+++D ++ +F + P + +HGI E Sbjct: 7 VALDFETA--NGKRTSICSVGMVKVID-NQITESFHTLVNPFDYFTETN-INVHGIHPED 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128 ++D P F ++ F ++ +AHNA FD+ ++ L+ +N D PS + Sbjct: 63 VQDAPGFKHVYPYMLQFIDQ--LPVVAHNAAFDMNVLHQSLKSLNIDT--PSLTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +A+R + R L L Y + H AL D+ Sbjct: 119 LAKRTINAYRYGLKHLMNHYHLDF--HGHHDALNDA 152 >gi|295424856|ref|ZP_06817571.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664] gi|295065422|gb|EFG56315.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664] Length = 934 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 9/157 (5%) Query: 11 VFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG +N+ II+ G ++ K +T+ + P+ R+ L I +E Sbjct: 12 VVDLETTGTQRENNNHIIQFGCA-IIKNMKVVKTYSFMINPH-REIPLSVQNLTRIHNED 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P FS + ++ ++AHN FD+ F+N EL + + P ++ IDT+ + Sbjct: 70 VEKAPDFSHYAKKIIAIL--EDTVFVAHNVNFDLPFLNYELMQ-HGYPALTNKAIDTVEL 126 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH 165 A+ P+ L+ L R + I H + H A D++ Sbjct: 127 AKIAFPTLPSYKLSDLTSR--LAIKHLNPHKADSDAY 161 >gi|302537604|ref|ZP_07289946.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] gi|302446499|gb|EFL18315.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] Length = 253 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 15/156 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68 + FD+ETTG + RI+ VE+ R + +L G EA +HGI+ E Sbjct: 20 VGFDLETTGTEPGESRIVTAAVVEV--RGGEVRARRGWLADPGIPIPGEAAAIHGISTER 77 Query: 69 -FLKDKPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPL------- 118 + +P+ A +A+NA FD+ ++AEL R L Sbjct: 78 AVAEGRPAAEVAEEVAAALVEHWRGGAVVVAYNAAFDLTLLSAELARYRLPSLADRLGGP 137 Query: 119 DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 + ++D L+I R + + L ++C YG+T+ Sbjct: 138 ETGPVVDPLTIDRAVDRFRRGKRTLEAVCGVYGVTL 173 >gi|218680718|ref|ZP_03528615.1| dephospho-CoA kinase protein [Rhizobium etli CIAT 894] Length = 238 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/28 (71%), Positives = 25/28 (89%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVEL 34 MR+I+FD ETTGLD++ DRIIEIG +EL Sbjct: 203 MREIIFDTETTGLDNRADRIIEIGGIEL 230 >gi|254439757|ref|ZP_05053251.1| exonuclease superfamily [Octadecabacter antarcticus 307] gi|198255203|gb|EDY79517.1| exonuclease superfamily [Octadecabacter antarcticus 307] Length = 203 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 15/173 (8%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 R I D+ET G N I +IG + + +T+ VF+ P P +LHG Sbjct: 14 GPFRFIALDVETAG--KTNGGICQIGLC-FVSETGAVQTYSVFIDPE-EPFEPFNTELHG 69 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + + +F +++ +D NA + ++ FD + + R + P+ S Sbjct: 70 ISADTVAGAGTFPTVYGALFDLL---NAHSLVQHSTFDEKALTSACARYDL-PMITSHWT 125 Query: 125 DTLSIARRKHP----SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +++S+AR P + + L +L K G+ H H A D+ + V +K Sbjct: 126 NSVSVARHAWPELKGAGGHGLANLKKHLGLEFHH---HDAGEDARAAATVVLK 175 >gi|320533707|ref|ZP_08034325.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337] gi|320134075|gb|EFW26405.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337] Length = 264 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 39/214 (18%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTN---RTFQVFLCPNGRKNSPEALKLHGITDE 68 FD ETTG+D DR++ V + ++ +L G + A +HG+T E Sbjct: 32 FDTETTGVDPSGDRLVTAALVWRAEPQADGVRPQSVTTWLADPGVEIPEAASAVHGVTTE 91 Query: 69 FLK--DKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN--------- 114 + +P + + +E D IA NA +D+ + AEL R Sbjct: 92 RARAEGRP-VTEVLTEVSDHLVAAMTAGTPVIAFNASYDLTLMEAELARHGLPTMRSRLG 150 Query: 115 ------KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 DPL R +D +R+ L LC+ YG+ + + + H A +D Sbjct: 151 RELGPIADPLVLDRAVDRYRRGKRR-------LGDLCEVYGVHV-NEALHTAEVDVAATL 202 Query: 169 DVYIKMMVGGSQIN-------FGFKTNEDRFFKE 195 DV + Q++ F+T R + E Sbjct: 203 DVLEALAAAHPQVSKLGPDELVTFQTRAHRTWAE 236 >gi|213962149|ref|ZP_03390413.1| exonuclease [Capnocytophaga sputigena Capno] gi|213955155|gb|EEB66473.1| exonuclease [Capnocytophaga sputigena Capno] Length = 258 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 5/106 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG+D DRI+EI +++ Y N+ + +L A +HGITDE + Sbjct: 12 FDLETTGIDITKDRIVEISILKV--YPNGNKESKTWLVNPTIPIPKAASDVHGITDERVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 +P+F + + + ++++ +N+ +FD+ + E+ R D Sbjct: 70 CEPTFKELAKQIHNMI--KDSDLAGYNSDRFDIPLLAEEMLRAEVD 113 >gi|312172662|emb|CBX80918.1| exodeoxyribonuclease X [Erwinia amylovora ATCC BAA-2158] Length = 221 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V++++ N + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGLQGG---VVEVASVDVINGQIVN-PMSDLISPD-RPISRQAIAVHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP+ + + ++AHNA FD + P I T+++A Sbjct: 59 RGKPTIEQAIGRY-----HGSPFYVAHNASFDRRML----------PEMHGEWICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSK---HGALLDSHLLSDVYIKMM 175 RR P + SL + + +S ++ H AL D ++ + + I++M Sbjct: 104 RRLWPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVTAALLIRIM 151 >gi|292488519|ref|YP_003531403.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430] gi|292899700|ref|YP_003539069.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946] gi|291199548|emb|CBJ46665.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946] gi|291553950|emb|CBA20995.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430] Length = 221 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V++++ N + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGLQGG---VVEVASVDVINGQIVN-PMSDLISPD-RPISRQAIAVHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP+ + + ++AHNA FD + P I T+++A Sbjct: 59 RGKPTIEQAIGRY-----HGSPFYVAHNASFDRRML----------PEMHGEWICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSK---HGALLDSHLLSDVYIKMM 175 RR P + SL + + +S ++ H AL D ++ + + I++M Sbjct: 104 RRLWPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVTAALLIRIM 151 >gi|242241732|ref|ZP_04796177.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144] gi|242234822|gb|EES37133.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144] Length = 184 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 11/156 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + K I +G V+++D ++ +F + P + +HGI E Sbjct: 7 VALDFETA--NGKRTSICSVGMVKVID-NQITESFHTLVNPFDYFTETN-INVHGIHPED 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128 ++D P F ++ F ++ +AHNA FD+ ++ L+ +N D PS + Sbjct: 63 VQDAPGFKHVYPYMLQFIDQ--LPVVAHNAAFDMNVLHQSLKSLNIDT--PSLTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +A+R + R L L Y + H AL D+ Sbjct: 119 LAKRTINAYRYGLKHLMNHYHLDF--HGHHDALNDA 152 >gi|188997445|ref|YP_001931696.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium sp. YO3AOP1] gi|188932512|gb|ACD67142.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium sp. YO3AOP1] Length = 203 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 13/172 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ETTGL+ K D I+ I AV++ D N F V + P+ R+ + + +K+HG+ + Sbjct: 35 VAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVKPD-REINEDVIKIHGLRKK 93 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ F F + + + +FDV IN ++++ L P++ I+ + Sbjct: 94 DLESGIPIEEAVDRFVHFIGSR--PLVGYYLEFDVAMINKYFKKLSGTTL-PNKQIEVSA 150 Query: 129 IARRKH----PSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + P DL +S+ K + I KH AL D+ + + +++K+ Sbjct: 151 LYYDYKIGLIPQGFVDLRFDSILK--DLDIPTFGKHDALNDAIMTALIFLKL 200 >gi|268319456|ref|YP_003293112.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785] gi|262397831|emb|CAX66845.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785] Length = 938 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 11/153 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG ++ D II+ G ++ K +T+ + P+ + P+A++ L I++E Sbjct: 12 VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKTYSFLINPH--REIPQAVENLTHISNE 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + FS + +N ++AHN FD+ F+N EL +PL + +DT+ Sbjct: 69 DVAKAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTVE 125 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160 +A+ P+ L L R + I H + H A Sbjct: 126 LAQIVFPTFPSYKLRDLTAR--LRIKHLNPHRA 156 >gi|115379647|ref|ZP_01466730.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1] gi|310819920|ref|YP_003952278.1| exonuclease [Stigmatella aurantiaca DW4/3-1] gi|115363357|gb|EAU62509.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1] gi|309392992|gb|ADO70451.1| Exonuclease [Stigmatella aurantiaca DW4/3-1] Length = 219 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS-PEALKLH 63 +R + F D+ETTGLD+ ++E+ + + S K ++ + P ++ PEAL + Sbjct: 28 LRTLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEARVQPTRLADAHPEALAVC 87 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPS 121 G +DE +D S + + HN FD GF+ +R + +D Sbjct: 88 GYSDEEWRDALSLEEVLATVTPLLAGTLVA--GHNTSFDWGFLVEGYRRTALTLPSVDYH 145 Query: 122 RIIDTLSIARRKHPSSRND---LNSLCKRYGITISHR-SKHGALLDSHLLSDV----YIK 173 R +DT S+A + + LN+L + +GI HR + H A+ D+ +V ++ Sbjct: 146 R-LDTASLAWPLLATGEVESLSLNALARHFGI---HRPTPHRAMADARCALEVARRLAVR 201 Query: 174 MMVGG 178 M GG Sbjct: 202 MSRGG 206 >gi|227890026|ref|ZP_04007831.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC 33200] gi|227849470|gb|EEJ59556.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC 33200] Length = 938 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 11/153 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG ++ D II+ G ++ K +T+ + P+ + P+A++ L I++E Sbjct: 12 VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKTYSFLINPH--REIPQAVENLTHISNE 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + FS + +N ++AHN FD+ F+N EL +PL + +DT+ Sbjct: 69 DVAKAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTVE 125 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160 +A+ P+ L L R + I H + H A Sbjct: 126 LAQIVFPTFPSYKLRDLTAR--LRIKHLNPHRA 156 >gi|298372076|ref|ZP_06982066.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058] gi|298274980|gb|EFI16531.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058] Length = 252 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 68/130 (52%), Gaps = 10/130 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITD 67 + FD+ETTG++ DRI+E+ +++ + +KT++T ++ N + PE + +HGI D Sbjct: 10 VFFDLETTGINVSTDRIVELTYLKVEPNGNKTSKTIKI----NPEMHIPEQSSAIHGIYD 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIID 125 + + D P+F I + + + + N+ FD+ + E R+ D L + +D Sbjct: 66 QDVADCPTFRQIAANLAK--DIEGCDLAGFNSVNFDIPLLVEEFLRVGVDIDLKKRKFVD 123 Query: 126 TLSIARRKHP 135 + I +K P Sbjct: 124 VMVIFYKKEP 133 >gi|119774662|ref|YP_927402.1| DNA polymerase III subunit epsilon-related 3'-5' exonuclease-like protein [Shewanella amazonensis SB2B] gi|119767162|gb|ABL99732.1| DNA polymerase III epsilon subunit-related 3'-5' exonuclease-like protein [Shewanella amazonensis SB2B] Length = 228 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 13/162 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+E TGLD D+I+ IG V +D + + + ++ +HGITD Sbjct: 44 LALDLEMTGLDPGRDQILAIGVVP-IDGGIIQLQGAESVLVEIQGSVGQSAVIHGITDRE 102 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + + + W +AH+A D+ FI A + R + P IDTL++ Sbjct: 103 LHNALPLADAMN--WLMQKMNGRILVAHHAPLDLAFIRANMSRSLGISM-PMLAIDTLAL 159 Query: 130 AR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDS 164 R R H + + L + +RYG+ + H AL D+ Sbjct: 160 ERQRLLRIHDAIQEGSLRLGASRQRYGLPVY--DAHNALTDA 199 >gi|256372239|ref|YP_003110063.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium ferrooxidans DSM 10331] gi|256008823|gb|ACU54390.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium ferrooxidans DSM 10331] Length = 475 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 5/125 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +R + D+ETTG S D + E+ A+ ++ + Q L R P + L GI+ Sbjct: 16 VRFAILDVETTGAASGADELTEV-AMMVVQEGRALAHLQ-SLVHTDRPIPPAIVALTGIS 73 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + D PS ++ + + HN +FD F+ A L ++DT Sbjct: 74 NELVADAPSARTVIERTARLL--EGTVMVGHNVRFDRSFLGAAADAAGIT-LPEVPVLDT 130 Query: 127 LSIAR 131 L+++R Sbjct: 131 LTLSR 135 >gi|213584452|ref|ZP_03366278.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 216 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 22/153 (14%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 +EI +V+++D + N + P+ R +P+A+ +H IT+ + DKP + ++ Sbjct: 1 VEIASVDVIDGNIVN-PMSHLIRPD-RPITPQAMAIHRITEAMVADKPWIEDVIPLYY-- 56 Query: 87 FNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLC 145 +EW +AHNA FD + P P I T+ ++RR P + +L Sbjct: 57 ----GSEWYVAHNASFDRRVL----------PELPGEWICTMKLSRRLWPGIKYSNMALY 102 Query: 146 KRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 K +++ H AL D ++ + + I +M Sbjct: 103 KSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 135 >gi|328885949|emb|CCA59188.1| putative DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC 10712] Length = 240 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 27/162 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68 + FD+ETTG D RI+ V D + + +L G + +A +HGI+ E Sbjct: 9 VGFDLETTGTDPLEARIVTASIVGFHDGRVVRQ--RDWLADPGIRIPEQASAIHGISSER 66 Query: 69 -FLKDKP------SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---------QR 112 + +P + + +W+ Q +A+NA FD+ + AEL +R Sbjct: 67 AAAEGRPVREVADEIAETLTGYWN----QGVPVVAYNASFDLTLLAAELRRHGLPSLEER 122 Query: 113 INKDPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 + + P ++D +I R ++ + +L ++C YG+ + Sbjct: 123 LGGTAIGP--VVDPYTIDRAVDRYRRGKRNLEAVCGEYGVVL 162 >gi|255531786|ref|YP_003092158.1| exonuclease RNase T and DNA polymerase III [Pedobacter heparinus DSM 2366] gi|255344770|gb|ACU04096.1| Exonuclease RNase T and DNA polymerase III [Pedobacter heparinus DSM 2366] Length = 328 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 9/108 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDEF 69 FD+ETTG++ DRI+EI ++ + D S+ +T ++ N P A +HGI DE Sbjct: 12 FDLETTGVNVGADRIVEIAILKAMPDGSELIKTMRI----NPEMPIPLYASLIHGIYDEH 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 + ++P F + +E DF +A+ +N+ +FD+ + E R D Sbjct: 68 IANEPIFKEVATELADFIG--DADLAGYNSNRFDIPVLLEEFLRAGVD 113 >gi|26991449|ref|NP_746874.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440] gi|24986524|gb|AAN70338.1|AE016675_8 exonuclease [Pseudomonas putida KT2440] Length = 203 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 13/166 (7%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 R V D ETTG+ R E+ AV +L+ + +Q + N P L GI Sbjct: 3 RIAVIDFETTGISPGTGCRATEV-AVVMLEGGRIVERYQSLM--NAGVPVPAFVAGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T L+ P + +E +F +AHNA FD F + EL RI + P Sbjct: 60 TTAMLRSAPPVEKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELGRIGRSRSQP--FAC 115 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT---ISHRSKHGALLDSHLL 167 +L ++RR P++ N L +L + G+ +HR+ A + ++LL Sbjct: 116 SLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLL 161 >gi|220935624|ref|YP_002514523.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7] gi|219996934|gb|ACL73536.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7] Length = 216 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 86/181 (47%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++++ AV L +D ++T + P G P++L+++G Sbjct: 20 VVVDVETGGFNPRTDALLQVAAVLLRMDPEGQLYRHQTLSFHVQPFEGANLDPKSLEVNG 79 Query: 65 ITDEFL-----KDKPSFSSIFS---EFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRIN 114 I +K + +++F E + A + HNA FD+ FI+ AE + Sbjct: 80 INPWHPLRIAHPEKDALATVFRGVREEMKLNACKRAILVGHNAGFDLSFIHQGAERAGLK 139 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P +DT++++ + L + G+ S+ H A+ D+ +D++ + Sbjct: 140 RNPFHPFSSLDTVTLSAMAF--GQTVLARAVQAAGMEWSNSEAHSAVYDAEKTADLFCHV 197 Query: 175 M 175 + Sbjct: 198 I 198 >gi|94499932|ref|ZP_01306467.1| exonuclease [Oceanobacter sp. RED65] gi|94427790|gb|EAT12765.1| exonuclease [Oceanobacter sp. RED65] Length = 224 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 23/170 (13%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLD-----YSKTNRTFQVFLCPNGRKNSPEALK 61 +R +V D ETTGL K++ ++ IG V + S +R +V ++ ++ Sbjct: 41 IRYLVIDTETTGLSPKDNTLLSIGWVAIESGKVKLNSARHRYIKV------KEGVGQSAT 94 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H I D L+D + + +E +++ + H+A D+ F+N +++ PL Sbjct: 95 IHQIRDCELQDGVTINQAMAEV--LTAMKDSVLVFHHAPMDMAFLNKYCRQLYNAPLLMP 152 Query: 122 RIIDTLSIARRKH----PSSRNDLNSL--CK-RYGITISHRSKHGALLDS 164 ++DTL+I + +H + +N L C+ RYG++ +H+ H AL D+ Sbjct: 153 -LVDTLNIEKSRHMHNDQARKNGFFRLAHCRQRYGLS-AHQG-HNALTDA 199 >gi|313500723|gb|ADR62089.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1] Length = 203 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 13/166 (7%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 R V D ETTG+ R E+ AV +L+ + +Q + N P L GI Sbjct: 3 RIAVIDFETTGISPGTGCRATEV-AVVMLEGGRIVERYQSLM--NAGVPVPAFVAGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T L+ P + +E +F +AHNA FD F + EL RI + P Sbjct: 60 TTAMLRSAPPVEKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELSRIGRSRSQP--FAC 115 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT---ISHRSKHGALLDSHLL 167 +L ++RR P++ N L +L + G+ +HR+ A + ++LL Sbjct: 116 SLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLL 161 >gi|262194253|ref|YP_003265462.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077600|gb|ACY13569.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 11/152 (7%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS-PEALKLH 63 M+ +VF D ETTGLD + I+EI A+ + + + RT + + P +++ PEAL+++ Sbjct: 1 MQPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERTLVLRVRPERLEDADPEALEVN 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPS 121 G D S +E + A HN FD F+ A + P LD Sbjct: 61 GYHQRVWVDAVSLDEALAELAPML--EGAVLAGHNVAFDRRFLEAAWDYVGHRPENLD-H 117 Query: 122 RIIDTLSIARRKHPSSRND---LNSLCKRYGI 150 +DT ++A + D L +C G+ Sbjct: 118 HALDTAALAFPLLMAGEIDSLSLTPVCAHLGV 149 >gi|223043083|ref|ZP_03613130.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus capitis SK14] gi|222443294|gb|EEE49392.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus capitis SK14] Length = 900 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 22/167 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDE 68 + D+ETTG D II+IG + + + ++ + + + P L I ++ Sbjct: 8 IVDLETTGNQLDYDEIIQIG----ITFVRNHKIIDTYHSMIRTDLEIPPFIQALTSIEED 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-----NAELQRINKDPLDPSRI 123 L P F+ + + +D ++ ++AHN FD+ FI N ++Q P ++ Sbjct: 64 MLAQAPYFNEVAEDIYD--QIKDCIFVAHNISFDLNFIKNAFNNCDIQ------FKPKKV 115 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHLL 167 +DTL + + P+ ++ L+ L + + I + +HR+ A + L+ Sbjct: 116 MDTLELFKIAFPTDKSYQLSELAQAHDIPLDKAHRADEDATTTAKLM 162 >gi|148549845|ref|YP_001269947.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1] gi|148513903|gb|ABQ80763.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1] Length = 211 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 13/166 (7%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 R V D ETTG+ R E+ AV +L+ + +Q + N P L GI Sbjct: 3 RIAVIDFETTGISPGTGCRATEV-AVVMLEGGRIVERYQSLM--NAGVPVPAFVAGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T L+ P + +E +F +AHNA FD F + EL RI + P Sbjct: 60 TTAMLRSAPPVDKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELSRIGRSRSQP--FAC 115 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT---ISHRSKHGALLDSHLL 167 +L ++RR P++ N L +L + G+ +HR+ A + ++LL Sbjct: 116 SLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLL 161 >gi|332534582|ref|ZP_08410417.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332036002|gb|EGI72481.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 236 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 11/127 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD--YSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65 + D ETTGL+S+ND I+ +G V L+ Y K +R + V R+N E++ +HGI Sbjct: 48 VAMDFETTGLNSQNDDIVSVGLVPFNLERIYCKHSRHWVV----QPRRNLHEESILIHGI 103 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + D P + I + + + + H A + F+N L K+ ++ + ++D Sbjct: 104 THSEVDDAPDLNQIIEPLLEALSGKVV--VVHYAAIERHFLNNALLLRLKEGIEFA-LVD 160 Query: 126 TLSIARR 132 T+ I +R Sbjct: 161 TMEIEKR 167 >gi|300812428|ref|ZP_07092858.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496595|gb|EFK31687.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 930 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 15/170 (8%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG + DRII+ G + D + +T+ + P+ RK L GI + Sbjct: 12 VVDLETTGTRKEEGDRIIQFGCAIVKD-GEVVKTYSFMMNPH-RKIPLAVTNLTGIDQKM 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + F + + Q+ ++AHN FD F+N EL + L + +DT+ + Sbjct: 70 VAGQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEALT-CKAVDTVEL 126 Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ P+ DL + + I H + H A D++ + + +K++ Sbjct: 127 AKIAFPTLPSYKLRDLTA-----SLEIKHANPHKADSDAYGTAVLLLKII 171 >gi|325686250|gb|EGD28293.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 930 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 15/170 (8%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG + DRII+ G + D + +T+ + P+ RK L GI + Sbjct: 12 VVDLETTGTRKEEGDRIIQFGCAIVKD-GEVVKTYSFMMNPH-RKIPLAVTNLTGIDQKM 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + F + + Q+ ++AHN FD F+N EL + L + +DT+ + Sbjct: 70 VAGQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEALT-CKAVDTVEL 126 Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ P+ DL + + I H + H A D++ + + +K++ Sbjct: 127 AKIAFPTLPSYKLRDLTA-----SLEIKHANPHKADSDAYGTAVLLLKII 171 >gi|88802420|ref|ZP_01117947.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P] gi|88781278|gb|EAR12456.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P] Length = 275 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 10/163 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68 + FD+ETTG++ DRI+EI +++ + N+ + +L N P+A + +HGIT+E Sbjct: 10 VFFDLETTGVNIATDRIVEIAVLKV--FPNGNKESKTWLV-NPEMEIPQASIDVHGITNE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127 + +P+F + E + N +FD+ + EL R D + + ID Sbjct: 67 KVASEPTFKMLAQEVSKLMAGCDLAGFNSN-RFDIPLLAEELMRAGIDFDMKGRKAIDVQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 I +K + L + K Y HGA D++ ++ Sbjct: 126 VIFHKKE---QRTLGAGYKFY-CGKELEGAHGAAADTNATYEI 164 >gi|328480154|gb|EGF49106.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus rhamnosus MTCC 5462] Length = 106 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 7/103 (6%) Query: 11 VFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ETTG K+ DR+I+ G L+ + K +T + P+ ++ P+ + +L GI+ E Sbjct: 9 VVDLETTGTSVKDGDRMIQFGCA-LVRHGKIIQTISQMINPD--RSVPQTIQRLTGISPE 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 L P F + + ++AHN FD F+NAE + Sbjct: 66 RLVAAPYFDEVAPALHQVLTK--TVFVAHNVNFDYPFLNAEFE 106 >gi|305667754|ref|YP_003864041.1| putative DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88707591|gb|EAQ99833.1| putative DNA polymerase III epsilon chain [Maribacter sp. HTCC2170] Length = 258 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 61/107 (57%), Gaps = 7/107 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDEF 69 FD+ETTG + +DRI+EI +++ + +K ++T+ V N K+ P E + +HGI++E Sbjct: 12 FDLETTGTNVAHDRIVEISILKVFPNGNKESKTWLV----NPEKDIPAEVIAIHGISNEK 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + ++P+F + E + + + N +FD+ + E+ R + D Sbjct: 68 VANEPTFKELSKEVYLMIKDCDLGGFNSN-RFDIPLLAEEMLRADVD 113 >gi|296166805|ref|ZP_06849223.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897821|gb|EFG77409.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 330 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+G R+I + + L D + ++ L P P +HG+T L Sbjct: 19 VIDVETSGFRPGQARVISLAVLGLDDDGRVEQSVVSLLNPG---VDPGPTHVHGLTAAML 75 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF-INAELQRINKDPLDPSRIIDTLSI 129 +D+P F+ + + +AHN FD F + P+D ++ T+ + Sbjct: 76 EDQPQFADVVDDV--VKVLDGRTLVAHNVAFDYAFLAAEAELAEAELPID--SVMCTVEL 131 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR N L +L +G + H A D+ +L+ V + Sbjct: 132 ARRLDLGIDNLRLETLAAHWG--VPQERPHDAFDDAMVLTGVLASAL 176 >gi|238855548|ref|ZP_04645851.1| DNA polymerase III [Lactobacillus jensenii 269-3] gi|260665137|ref|ZP_05865987.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US] gi|282932326|ref|ZP_06337761.1| DNA polymerase III [Lactobacillus jensenii 208-1] gi|238831832|gb|EEQ24166.1| DNA polymerase III [Lactobacillus jensenii 269-3] gi|260561191|gb|EEX27165.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US] gi|281303547|gb|EFA95714.1| DNA polymerase III [Lactobacillus jensenii 208-1] Length = 316 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 8/167 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF- 69 + DIETTGL DR+ E+ +++ + ++ Q+ P K KL+GI ++ Sbjct: 37 MLDIETTGLSPYRDRVTELAGIKVRNGKVVDKYSQLVKHPKNNKVPQFITKLNGIDEKLI 96 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L ++F +F E + +N FD+ FI ++ N + L + ID L Sbjct: 97 LTQGIPVKEAITDFRNFIGED--VIVGYNVNFDLNFIYDLCEKFNLERL-SNNYIDVLHF 153 Query: 130 ARR-KHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIK 173 +R S N L +R GI+ S HR + LD+ + D+Y K Sbjct: 154 SRVFFKKESHNRLLDCIQRLGISESEAHRGLKDS-LDTKAVFDIYQK 199 >gi|223044042|ref|ZP_03614082.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis SK14] gi|222442585|gb|EEE48690.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis SK14] Length = 184 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 11/167 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + K I +G V++++ ++ +F + P + +HGI E Sbjct: 7 VALDFETA--NGKRTSICSVGMVKVIN-NQITESFYTLVNPFDYFTETN-INVHGIRPEN 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128 ++D PSF ++ F NE +AHNA FD+ ++ L+ +N + PS + Sbjct: 63 VEDAPSFEYVYPYMLKFINE--LPVVAHNAAFDMNVLHQSLKSLNIE--TPSMTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+R + R L L Y + H AL D+ + + +++ Sbjct: 119 LAKRTIDAYRYGLKHLMNHYQLDF--HGHHDALNDAKACAMITFRLL 163 >gi|326693810|ref|ZP_08230815.1| DNA polymerase III, epsilon subunit [Leuconostoc argentinum KCTC 3773] Length = 177 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 5/112 (4%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI ++ + P F I+++ F E +AHNA FD G + L + Sbjct: 52 IHGIREQDVAQAPKFPEIWAQVSPLFTEDKL-VVAHNAPFDHGVLQGTLAYYGIEAPH-Y 109 Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++DT+ +R+ P RN LN++ + GIT+ H H AL D+ + + I Sbjct: 110 MLLDTVRSSRQLFPHFRNHKLNTVAENLGITLDHH--HNALDDAVAAAQILI 159 >gi|157737104|ref|YP_001489787.1| DNA polymerase III subunit epsilon [Arcobacter butzleri RM4018] gi|157698958|gb|ABV67118.1| DNA polymerase III [Arcobacter butzleri RM4018] Length = 272 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 19/157 (12%) Query: 13 DIETTG-LDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 DIET G K +IIE+GAV E+LD S + F ++ P ++ IT Sbjct: 87 DIETNGGTPKKGFQIIELGAVKYKNGEVLD-SFNSLVF-------AKEIPPYIQEVTKIT 138 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ P + +F +F + +IAH+ KFD FI+ ++ + L +R + T Sbjct: 139 PAMLETAPRIEKVLKDFKEFLGDD--VFIAHDIKFDYNFISDSFEKYSLGKL-LNRKLCT 195 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITIS--HRSKHGAL 161 + +A+R S + L+SL + I I HR+ + AL Sbjct: 196 IDLAKRTIKSEKYGLSSLKELLNIDIENHHRAYYDAL 232 >gi|149197350|ref|ZP_01874401.1| DNA polymerase III [Lentisphaera araneosa HTCC2155] gi|149139368|gb|EDM27770.1| DNA polymerase III [Lentisphaera araneosa HTCC2155] Length = 210 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 11/173 (6%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLH 63 +K+ +V D E TGL K D+++ I AV++ ++ +F + +K E + +H Sbjct: 26 SKLDYVVIDCEMTGLKPKQDKLLSIAAVKISQGRIQSQESFYRVIFQEKQKLRDETILIH 85 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSR 122 + E + ++ EF DF QN + H D+ F+N + P LD Sbjct: 86 RLNHEQISTGSDQIAVLKEFSDFC--QNCIPVGHFFDIDLSFLNPVMPLPFLYPHLDTRL 143 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ TL + PSS LN LC Y + H AL D+ + +++K++ Sbjct: 144 LVKTL----QPCPSSIQ-LNELCDFYN--LPSFEAHNALGDATSTACLFLKIL 189 >gi|104774002|ref|YP_618982.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423083|emb|CAI97804.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125707|gb|ADY85037.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 930 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 15/170 (8%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG + DRII+ G + D + +T+ + P+ RK L GI + Sbjct: 12 VVDLETTGTRKEEGDRIIQFGCAIVKD-GEVVKTYSFMMNPH-RKIPLSVTNLTGIDQKM 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + F + + Q+ ++AHN FD F+N EL + L + +DT+ + Sbjct: 70 VAGQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEALT-CKAVDTVEL 126 Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ P+ DL + + I H + H A D++ + + +K++ Sbjct: 127 AKIAFPTLPSYKLRDLTA-----SLEIKHANPHKADSDAYGTAVLLLKII 171 >gi|86360676|ref|YP_472564.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42] gi|86284778|gb|ABC93837.1| probable polymerase epsilon subunit protein [Rhizobium etli CFN 42] Length = 326 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 16/107 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGL+ ++D IIEIGAV D ++ L R P+ +L GI Sbjct: 75 VILDTETTGLNHRSDEIIEIGAVAFTFNDDGAVGDVVGIYGGLQQPSRPIPPDITRLTGI 134 Query: 66 TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 TD ++ D PS +++ E IAHNA FD F A Sbjct: 135 TDVMVEGQTIDMPSLNALI--------EPADLIIAHNAGFDRPFCEA 173 >gi|315636786|ref|ZP_07892012.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22] gi|315478912|gb|EFU69619.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22] Length = 272 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 19/157 (12%) Query: 13 DIETTG-LDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 DIET G K +IIE+GAV E+LD S + F ++ P ++ IT Sbjct: 87 DIETNGGTPKKGFQIIELGAVKYKNGEVLD-SFNSLVF-------AKEIPPYIQEVTKIT 138 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ P + +F +F + +IAH+ KFD FI+ ++ + L +R + T Sbjct: 139 PAMLETAPRIEKVLKDFKEFLGDD--VFIAHDIKFDYNFISDSFEKYSLGKL-LNRKLCT 195 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITIS--HRSKHGAL 161 + +A+R S + L+SL + I I HR+ + AL Sbjct: 196 IDLAKRTIKSEKYGLSSLKELLNIDIENHHRAYYDAL 232 >gi|295135069|ref|YP_003585745.1| exonuclease family protein [Zunongwangia profunda SM-A87] gi|294983084|gb|ADF53549.1| exonuclease family protein [Zunongwangia profunda SM-A87] Length = 457 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 7/148 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI A+ D K F + P R P + L GI +E L Sbjct: 4 ILDIETTGGKYNEEGITEI-AIYKFDGEKVVDQFISLINPE-RPIQPFVVGLTGINNEML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P F + + + +AHNAKFD + E +R+ + S + T+ ++ Sbjct: 62 RNAPKFYEVAKRIVEITTD--CIIVAHNAKFDYRILRTEFKRLGFEFQRKS--LCTVELS 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157 ++ P + L L + GI +S R + Sbjct: 118 KKLIPDMPSYSLGKLVRALGIPLSDRHR 145 >gi|150016887|ref|YP_001309141.1| exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] gi|149903352|gb|ABR34185.1| Exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] Length = 976 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I DIETTGLD IIEIGAV++ + T T+ + P GR + + Sbjct: 13 IYLDIETTGLDETCSEIIEIGAVKVKNGVIT--TYNTLIRPRGRVPISIYSLCSDLKEAD 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L S +SI E +F ++ I HN F+ F++ + I +D + L Sbjct: 71 LLSARSLNSIKQEVLEFL--EDLPLICHNGNFERKFLSFYIPEIKNTIMDSMELAIILEP 128 Query: 130 ARRKHPSSRNDLNSLCK 146 R+++ +LNSL K Sbjct: 129 WRKEY-----NLNSLIK 140 >gi|294673575|ref|YP_003574191.1| DNA polymerase III subunit epsilon [Prevotella ruminicola 23] gi|294472509|gb|ADE81898.1| putative DNA polymerase III, epsilon subunit [Prevotella ruminicola 23] Length = 285 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD+ETTGLD DRII+I +++ R + L + P +L GI+++ Sbjct: 10 VIFDLETTGLDLVKDRIIQISYIKVYPDGHEERGNE--LVNPEKPIEPMITQLTGISNDD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD-PLDPSRIIDTL 127 +KDKP+F + + + F ++ N+ FD+ + E R D ++ID Sbjct: 68 VKDKPTFKQLGAVLAEKFT--GCDFAGFNSNHFDIPLLAEEFLRAGVDFDFSKCKMIDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 +I H R +L + K Y Sbjct: 126 TIF---HKMERRNLAAAYKFY 143 >gi|319944252|ref|ZP_08018528.1| exonuclease [Lautropia mirabilis ATCC 51599] gi|319742547|gb|EFV94958.1| exonuclease [Lautropia mirabilis ATCC 51599] Length = 230 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 13/175 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL+ + D II IGA ++ R L R+ SP+++ +H + + Sbjct: 48 VALDCETTGLNVRQDEIIAIGATRIVGRRLMTRERLELLVRPEREVSPDSVAVHRLRAQD 107 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D F + + + +FDV I+ L+R L P R I+ ++ Sbjct: 108 VADGLPLCEAMERLLMFIGSRPL--VGYYLEFDVAMIDRALKRCFGLTL-PQRKIEVSAM 164 Query: 130 A-----RRKHPSSRNDLNSLCKRYG-----ITISHRSKHGALLDSHLLSDVYIKM 174 R+ P ++D + R+ + + R H AL D+ + + +I++ Sbjct: 165 YYDWRFRQLPPYQQHDNADIDLRFATILQTLDLPMRDAHDALNDAVMAALAFIRL 219 >gi|314934059|ref|ZP_07841422.1| exonuclease [Staphylococcus caprae C87] gi|313653170|gb|EFS16929.1| exonuclease [Staphylococcus caprae C87] Length = 184 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 11/167 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + K I +G V++++ ++ +F + P + +HGI E Sbjct: 7 VALDFETA--NGKRTSICSVGMVKVIN-NQITESFYTLVNPFDYFTETN-INVHGIRPED 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128 ++D PSF ++ F NE +AHNA FD+ ++ L+ +N + PS + Sbjct: 63 VEDAPSFEYVYPYMLQFINE--LPVVAHNAAFDMNVLHQSLKSLNIE--TPSMTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+R + R L L Y + H AL D+ + + +++ Sbjct: 119 LAKRTIDAYRYGLKHLMNHYQLDF--HGHHDALNDAKACAMITFRLL 163 >gi|88800698|ref|ZP_01116257.1| ribonuclease T [Reinekea sp. MED297] gi|88776562|gb|EAR07778.1| ribonuclease T [Reinekea sp. MED297] Length = 215 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEAL----- 60 +V D+ET G ++K D ++EI AV L + + + + P N +A Sbjct: 11 VVIDVETAGFNAKTDALLEIAAVTLKMTDDGWLEQDECLFFNVEPFEGANLEQAALDFTG 70 Query: 61 -----KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114 L G DE K F I + + A + HNA FD F+ A +R N Sbjct: 71 IDPHNPLRGAVDEGDALKEIFKMI-RKGMKAAGCKRAILVGHNANFDHNFLFAAAERANN 129 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + + L C+ G+ S + H A D+ ++++ Sbjct: 130 KRNPFHPFTTFDTAALSALVY--GQTVLKRACQASGVEFSDKEAHNAEYDTRKTAELFCN 187 Query: 174 MM 175 M+ Sbjct: 188 MI 189 >gi|161507623|ref|YP_001577577.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571] gi|160348612|gb|ABX27286.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571] Length = 927 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 15/170 (8%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG K II+ G ++ K +T+ + P+ + + L GI +E Sbjct: 12 VVDLETTGTQREKGHHIIQFGCA-IIKNMKVVKTYSFMINPH-HEIPQSVVNLTGIHNED 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ K FS + + + ++AHN FD+ F+N EL + + L ++ IDT+ + Sbjct: 70 VQGKDDFSVYAPKIIEIL--KGTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAIDTVEL 126 Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ P+ +DL + K I H + H A D++ + + IK++ Sbjct: 127 AKIAFPTLPSYKLSDLTAQLK-----IKHLNPHKADSDAYGTAVLLIKII 171 >gi|308179821|ref|YP_003923949.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045312|gb|ADN97855.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum subsp. plantarum ST-III] Length = 173 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI + + D P F ++ FF +++ IAHNA FD+G + L Sbjct: 45 VQIHGIHEADVADAPKFPDVWQHIEPFF-QRDRLVIAHNAPFDIGVLRNTLAHYGISA-- 101 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + +DT++ ++R +P N L+++C+ I + H H AL DS +++ + Sbjct: 102 PEYLSMDTVNTSQRFYPELPNHKLDTVCQALDIDLQHH--HNALDDSLACANILL 154 >gi|259419276|ref|ZP_05743193.1| exodeoxyribonuclease 10 [Silicibacter sp. TrichCH4B] gi|259345498|gb|EEW57352.1| exodeoxyribonuclease 10 [Silicibacter sp. TrichCH4B] Length = 240 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 4/97 (4%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG + +N ++IE G V++ LD F+ P+ P + +H ITD Sbjct: 11 VIDYETTGTQEDENAQVIEFGRVDVDLDTLGIVNPFRALAKPS-EPIPPVTMAVHHITDT 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + D P ++ FWD ++ AHNAKF+ F Sbjct: 70 DVADAPPPGQVWQPFWDGCRSEDYV-AAHNAKFEQYF 105 >gi|228470614|ref|ZP_04055471.1| exonuclease [Porphyromonas uenonis 60-3] gi|228307741|gb|EEK16717.1| exonuclease [Porphyromonas uenonis 60-3] Length = 189 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 6/171 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N + I D ET + I E+G + L+ + T + P G + S ++ HG Sbjct: 2 NTLDFIAIDFETA--TGQRTSICEVG-ICLVRNGEIAETRSWLVQPEGNRYSYWNMQCHG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I E K PSF+ ++ E + + + A +AHN FD + Q + + L + Sbjct: 59 IRPEDTKRAPSFAEVWQEIAEQYIGEGALLVAHNVPFDRSCLEQAAQ-LYELTLPELQWD 117 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +L AR+ + + L LC++ ++I H A D+ + + +Y++ + Sbjct: 118 CSLRRARQIYDYGCHTLAYLCEQ--LSIPEGRHHRAGDDAEMCARLYLREL 166 >gi|327194132|gb|EGE61003.1| putative polymerase protein, epsilon subunit [Rhizobium etli CNPAF512] Length = 326 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 18/117 (15%) Query: 2 IRKNKMRK--IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKN 55 +R+++ + +V D ETTGL+ ++D IIEIGAV D ++ L R Sbjct: 65 VRRSEFSRLGVVLDTETTGLNHRSDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPI 124 Query: 56 SPEALKLHGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 PE +L GITD ++ D S S++ E D IAHNA FD F A Sbjct: 125 PPEVTRLTGITDAMVEGQVIDIRSLSALI-EPADLI-------IAHNAGFDRPFCEA 173 >gi|127513296|ref|YP_001094493.1| exonuclease, RNase T and DNA polymerase III [Shewanella loihica PV-4] gi|126638591|gb|ABO24234.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica PV-4] Length = 226 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 27/185 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D+E TGL++ D+I+ IG V +L+ ++ Q+ + ++ +HG Sbjct: 44 LAIDLEMTGLNASFDQILSIGVVPIRQGQLILSEAQHKLVQI------EGSVGQSATIHG 97 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI- 123 I D L + + W + +AH+A D+ F+ + LQ + P + Sbjct: 98 ILDTHLDAALTPEQAMA--WFLSVSEGMVLVAHHAPLDLAFLQSGLQACLGE--KPRLLA 153 Query: 124 IDTLSIARRKHPSSRNDLNSLC-------KRYGITISHRSKHGALLDSHLLSDVYIKMM- 175 IDTL + +++ + L C RYG+ + + H AL+D+ ++ + + Sbjct: 154 IDTLLLEKQRLLRQQEHLQEGCLRLGRSRARYGLPV--YAAHNALIDALACGELLLAQVA 211 Query: 176 -VGGS 179 +GG+ Sbjct: 212 AMGGA 216 >gi|255021102|ref|ZP_05293155.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] gi|254969516|gb|EET27025.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] Length = 475 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 9/158 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+E TG + DRIIE+G + L+ + + + P R SP L GI L Sbjct: 12 IDLENTGGHLERDRIIEVGII-LVAPAGEPEVWSTLINPEIRL-SPAISTLTGIDPADLA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P+F+ + + + IAH+A+ D+ F+ E +R+ + + + ++ TL ++R Sbjct: 70 HAPTFAQVAEPLREKLAGRLL--IAHDARTDLAFLRQEWRRLGQ--VFTADVLCTLRLSR 125 Query: 132 RKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 P R+ L+++ +R + + +H AL D+ ++ Sbjct: 126 SLFPDEKRHGLDAIIER--LQLHSAGRHRALTDARTVA 161 >gi|163789521|ref|ZP_02183959.1| exonuclease [Carnobacterium sp. AT7] gi|159875053|gb|EDP69119.1| exonuclease [Carnobacterium sp. AT7] Length = 177 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 5/116 (4%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGIT+ +KD PSF ++ + FF E N +AHN FD G + L + P Sbjct: 50 VQVHGITENDVKDAPSFPEVWEQIKPFFTE-NKLIVAHNLPFDRGVLQGCLDYYDL-PQP 107 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + T+ +R+ N LN++C I++ ++ H AL DS+ + + + + Sbjct: 108 HFQTLCTVQSSRKLITEIPNHKLNTVCDHLNISL--KNHHNALEDSNACAAILLYL 161 >gi|194333877|ref|YP_002015737.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris aestuarii DSM 271] gi|194311695|gb|ACF46090.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris aestuarii DSM 271] Length = 189 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 25/191 (13%) Query: 5 NKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N+ +K+++ D+ETTG + II+IGA+ +D G + SP+AL + Sbjct: 2 NQHKKVLYCDVETTGTNPAKHGIIQIGAIIEVDGVVVEECNLKCAPHEGAEISPDALAIS 61 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--------IAHNAKFDVGFINAELQR--- 112 G L+ + + +++F F + ++ +N FD+ FI A + Sbjct: 62 GTERSELESRMTSHEAYTQFRHFLSRHIEQYDREDKCYPAGYNIHFDLNFIQAWFRHHGD 121 Query: 113 -------INKDPLDPSRIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 IN LDP ++ R+ P R L ++C+ +GI + H A+ D Sbjct: 122 KYGIGSFINWRMLDPLPLLFIKDFTRQITLPDYR--LETVCRHFGIAL---HAHDAMSDI 176 Query: 165 HLLSDVYIKMM 175 ++ +K++ Sbjct: 177 RATRELLLKLL 187 >gi|300767630|ref|ZP_07077540.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494615|gb|EFK29773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 182 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI + + D P F ++ FF +++ IAHNA FD+G + L Sbjct: 54 VQIHGIHEADVADAPKFPDVWQHIAPFF-QRDRLVIAHNAPFDIGVLRNTLAHYGISA-- 110 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + +DT+ ++R +P N L+++C+ I + H H AL DS +++ + Sbjct: 111 PEYLSMDTVKTSQRFYPELPNHKLDTVCQALDIDLQHH--HNALDDSLACANILL 163 >gi|291529682|emb|CBK95268.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Eubacterium rectale M104/1] Length = 269 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 13/98 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVE-------LLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + +ETTGLD +D +I I A++ L++ + NR + N + +PE K+ Sbjct: 30 ILSVETTGLDKFSDELINIHALKCHFEDKILIEDEEYNRYIR-----NTKALTPELEKIT 84 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 IT+EFL DK S++ +F+++ E +A I N F Sbjct: 85 KITNEFLMDKEDLSTVMEDFYNYIGE-DANIIGFNTSF 121 >gi|238569519|ref|XP_002386676.1| hypothetical protein MPER_14994 [Moniliophthora perniciosa FA553] gi|215439222|gb|EEB87606.1| hypothetical protein MPER_14994 [Moniliophthora perniciosa FA553] Length = 172 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 7/108 (6%) Query: 46 VFLCPNGRKNSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDV 103 ++L P G + P AL+LHGI D E + P+FS+ + F + +N KFD+ Sbjct: 11 IYLNPEGIPSHPMALQLHGIQDAELVAPLPTFSAHAEQLRSFL--AGSIMTGYNITKFDL 68 Query: 104 GFINAELQR--INKDPLDPS-RIIDTLSIARRKHPSSRNDLNSLCKRY 148 F+ AE R I P IDTL++ RR P L Y Sbjct: 69 AFLTAEFHRCGITWSPAGEGIGTIDTLALYRRFRPQEYKRGGKLFSAY 116 >gi|188533646|ref|YP_001907443.1| exodeoxyribonuclease X [Erwinia tasmaniensis Et1/99] gi|188028688|emb|CAO96550.1| DNA exonuclease X [Erwinia tasmaniensis Et1/99] Length = 221 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+E+ +V++++ N + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGLQGG---IVEVASVDVINGQIAN-PMSDLISPD-RPISRQAMDVHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP+ + + ++AHNA FD L +N + I T+++A Sbjct: 59 RGKPTIEQAIGRY-----HGSPYYVAHNASFD----RRMLPEMNGE------WICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSK---HGALLDSHLLSDVYIKMM 175 RR P + +L + + +S + H AL D ++ + + +++M Sbjct: 104 RRLWPGLKYGNEALRQALRLDVSPPPELHAHRALYDCYVTAALLVRIM 151 >gi|120435022|ref|YP_860708.1| exonuclease family protein [Gramella forsetii KT0803] gi|117577172|emb|CAL65641.1| exonuclease family protein [Gramella forsetii KT0803] Length = 457 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 7/151 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI A+ D K F + P + P + L GI ++ L Sbjct: 4 ILDIETTGGKYNEEGITEI-AIYKFDGQKVVDQFISLVNPE-QPIQPFVVNLTGINNDML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K+ P F + + ++ +AHNAKFD + E +R+ + S + T+ ++ Sbjct: 62 KNAPKFYEVAKRIVEI--TEDCILVAHNAKFDYRILRTEFRRLGFEYERKS--LCTVELS 117 Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160 ++ P L L + GI +S R + Sbjct: 118 KKLIPGLPSYSLGKLVRSLGIPLSDRHRAAG 148 >gi|114319997|ref|YP_741680.1| DNA polymerase III subunit epsilon [Alkalilimnicola ehrlichii MLHE-1] gi|114226391|gb|ABI56190.1| Exonuclease, RNase T and DNA polymerase III [Alkalilimnicola ehrlichii MLHE-1] Length = 240 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 9/128 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D+ETTGLD I+ IG V +L +R + P R E++ LHGIT Sbjct: 51 VALDMETTGLDPDRHAIVSIGLVPFDLQRIRLPDRRHWLLQPP--RPLLSESITLHGITH 108 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDT 126 L + P S + E + + + H + F++ ++ R+ + L P +IDT Sbjct: 109 SDLANAPDLSEVLDELLEALAGRQP--VVHYRNIERPFLDTAVRARVGEGLLFP--VIDT 164 Query: 127 LSIARRKH 134 + + R+H Sbjct: 165 MELEARRH 172 >gi|319757677|gb|ADV69619.1| Rad3-related DNA helicase [Streptococcus suis JS14] Length = 837 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61 R V D+E TG + + +II+IG V E++D Y+ ++ L + KN Sbjct: 27 RYAVVDLEATGTGT-DAKIIQIGIVLVENGEIIDSYATDINPYE--LLDDHIKN------ 77 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L P F + S +D +A ++AHN KFD + L + L P Sbjct: 78 LTGITDQQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTPR 135 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCK--RYGITISHRSKHGALLDSHLL 167 +DT+ +++ P+ + L +L + G+ +H + A+ + LL Sbjct: 136 --VDTVELSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDAMATARLL 182 >gi|326774035|ref|ZP_08233317.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] gi|326636174|gb|EGE37078.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] Length = 259 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 39/214 (18%) Query: 12 FDIETTGLDSKNDRIIEIG----AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 FD ETTG+D DR++ A D + ++ +L G + A +HG+T Sbjct: 27 FDTETTGVDPSGDRLVTAALVWRAAPRADGVR-PQSVATWLADPGVEIPEAAAAVHGVTT 85 Query: 68 EFLK-DKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRIN--------- 114 E + + S + + +E + A +A NA +D+ + AEL R Sbjct: 86 ERARAEGRSVTEVLAEVSEHLVAAMAAGTPVVAFNASYDLTLMEAELARHGLPTMHSRLG 145 Query: 115 ------KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 DPL R +D +R+ L LC+ YG+ + + H A +D Sbjct: 146 RELGPIADPLVLDRAVDRYRRGKRR-------LGDLCEVYGVRVDE-ALHTAEVDVAATL 197 Query: 169 DVYIKMMVGGSQIN-------FGFKTNEDRFFKE 195 DV + Q++ F+ R + E Sbjct: 198 DVLEALTAAHPQLSELDPDELVAFQARAHRTWAE 231 >gi|146318210|ref|YP_001197922.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33] gi|146320404|ref|YP_001200115.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33] gi|145689016|gb|ABP89522.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33] gi|145691210|gb|ABP91715.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33] gi|292558009|gb|ADE31010.1| DnaQ exonuclease [Streptococcus suis GZ1] Length = 837 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61 R V D+E TG + + +II+IG V E++D Y+ ++ L + KN Sbjct: 27 RYAVVDLEATGTGT-DAKIIQIGIVLVENGEIIDSYATDINPYE--LLDDHIKN------ 77 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L P F + S +D +A ++AHN KFD + L + L P Sbjct: 78 LTGITDQQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTPR 135 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCK--RYGITISHRSKHGALLDSHLL 167 +DT+ +++ P+ + L +L + G+ +H + A+ + LL Sbjct: 136 --VDTVELSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDAMATARLL 182 >gi|153817923|ref|ZP_01970590.1| Gp39 [Vibrio cholerae NCTC 8457] gi|126511550|gb|EAZ74144.1| Gp39 [Vibrio cholerae NCTC 8457] Length = 184 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D ETTGLDS + RI+E+ ++ K + LC SPE +HGIT++ Sbjct: 9 AIILDTETTGLDS-DARIVEVSIIDAQTGIKLYSSLVNPLC----SISPEVTAIHGITND 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 + D P+F ++++ + ++ A +N FD Sbjct: 64 MVIDMPTFDKVWNDIKGYLSD--AVIYVYNLDFD 95 >gi|325293446|ref|YP_004279310.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3] gi|325061299|gb|ADY64990.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3] Length = 202 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 7/149 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + + IG + D + R + + P + SP + +HGI Sbjct: 1 MKTIAIDFETA--NEERGSACSIGLAWIED-GEIVRVEERLIRPKDMRFSPFNIAVHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P F + EF D F+ A IAHNA FD + A + + D S + + Sbjct: 58 PADVEDAPEFPDVMEEFIDDFH--GATMIAHNAAFDFSVMRASFDKYRQSYPDLSYLC-S 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISH 154 + IAR P + + LN + + H Sbjct: 115 VKIARHVWPQLASHKLNVIAHHLQLRFVH 143 >gi|238789017|ref|ZP_04632806.1| Exodeoxyribonuclease 10 [Yersinia frederiksenii ATCC 33641] gi|238722781|gb|EEQ14432.1| Exodeoxyribonuclease 10 [Yersinia frederiksenii ATCC 33641] Length = 219 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 27/170 (15%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL+ I+EI +++++D +N + P+ R S +A+ +H IT++ + Sbjct: 5 VIDTETCGLEGG---IVEIASIDVVDGVLSN-PMSDLVSPD-RPISIDAMVIHHITEDMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP + ++ + + ++AHNA FD G + P + I TL +A Sbjct: 60 EGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104 Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175 R +P ++ L RY + ++ + H AL D ++ + + ++M Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152 >gi|253751390|ref|YP_003024531.1| ATP-dependent DNA helicase [Streptococcus suis SC84] gi|253753291|ref|YP_003026431.1| ATP-dependent DNA helicase [Streptococcus suis P1/7] gi|253755878|ref|YP_003029018.1| ATP-dependent DNA helicase [Streptococcus suis BM407] gi|251815679|emb|CAZ51270.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84] gi|251818342|emb|CAZ56163.1| putative ATP-dependent DNA helicase [Streptococcus suis BM407] gi|251819536|emb|CAR45129.1| putative ATP-dependent DNA helicase [Streptococcus suis P1/7] Length = 822 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61 R V D+E TG + + +II+IG V E++D Y+ ++ L + KN Sbjct: 12 RYAVVDLEATGTGT-DAKIIQIGIVLVENGEIIDSYATDINPYE--LLDDHIKN------ 62 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L P F + S +D +A ++AHN KFD + L + L P Sbjct: 63 LTGITDQQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTPR 120 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCK--RYGITISHRSKHGALLDSHLL 167 +DT+ +++ P+ + L +L + G+ +H + A+ + LL Sbjct: 121 --VDTVELSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDAMATARLL 167 >gi|187734853|ref|YP_001876965.1| Exonuclease RNase T and DNA polymerase III [Akkermansia muciniphila ATCC BAA-835] gi|187424905|gb|ACD04184.1| Exonuclease RNase T and DNA polymerase III [Akkermansia muciniphila ATCC BAA-835] Length = 197 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 16/125 (12%) Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A ++HGIT E L D PSF S++ E + A + HN + F L+R Sbjct: 63 ASQVHGITTEMLADAPSFPSLWPEIRSRLGQ--AVVVGHNPATERKF----LRRFPGHGF 116 Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITIS------HRSKHGALLDSHLLSDVY 171 P +DTL++ R P + L+SLC G+T S R H AL D+ L S + Sbjct: 117 GP--WLDTLALGRMCVPGLADYSLSSLCGALGLTCSVEALLPARRWHDALYDA-LASLLI 173 Query: 172 IKMMV 176 ++ +V Sbjct: 174 VRFLV 178 >gi|302023531|ref|ZP_07248742.1| ATP-dependent DNA helicase [Streptococcus suis 05HAS68] Length = 822 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61 R V D+E TG + + +II+IG V E++D Y+ ++ L + KN Sbjct: 12 RYAVVDLEATGTGT-DAKIIQIGIVLVENGEIIDSYATDINPYE--LLDDHIKN------ 62 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L P F + S +D +A ++AHN KFD + L + L P Sbjct: 63 LTGITDQQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTPR 120 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCK--RYGITISHRSKHGALLDSHLL 167 +DT+ +++ P+ + L +L + G+ +H + A+ + LL Sbjct: 121 --VDTVELSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDAMATARLL 167 >gi|126661817|ref|ZP_01732816.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] gi|126625196|gb|EAZ95885.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] Length = 453 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI A+ D + F + P + P +KL GI + L Sbjct: 4 IIDIETTGGQFNEEGITEI-AIYKFDGHEVVDQFISLVNPE-KPIQPFVVKLTGINNAML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + + + +AHNA FD + E +R+ D + + T+ ++ Sbjct: 62 RSAPKFYEVAKRIIEI--TEGCVIVAHNASFDYRILKTEFRRLGYD--FKKQTLCTVELS 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIK 173 ++ P + L L + GI ++ HR+ AL L + +K Sbjct: 118 KKLIPEQPSYSLGKLVRALGIPMADRHRANGDALATVKLFKMLLVK 163 >gi|315126562|ref|YP_004068565.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913] gi|315015076|gb|ADT68414.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913] Length = 233 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 11/127 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + D ETTGLD+ +D I+ +G V Y K +R + V R S E++ +HGIT Sbjct: 45 VALDFETTGLDANSDDIVSVGLVPFNVNRIYCKESRHWVV---QPRRDLSEESIVIHGIT 101 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIID 125 + + P + I + D + + H A + F NA L RI K+ ++ + ++D Sbjct: 102 HSEVDEAPDLNRILAPLLDALKGKVV--VVHYAAIERHFFYNALLMRI-KEGIEFA-LVD 157 Query: 126 TLSIARR 132 T+ I RR Sbjct: 158 TMEIERR 164 >gi|282859398|ref|ZP_06268505.1| exonuclease [Prevotella bivia JCVIHMP010] gi|282587832|gb|EFB93030.1| exonuclease [Prevotella bivia JCVIHMP010] Length = 287 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+FD+ETTGLD NDRII+I ++ + R +F+ P ++ E + L GIT+ Sbjct: 10 IIFDLETTGLDLVNDRIIQISYIKAYPDGREERE-NIFINPE-KQIPEEVIALTGITNAD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127 + + P+F E F ++ N+ +FDV + E R + ++ID Sbjct: 68 VAEAPTFKEKGKELAQKF--AGCDFAGFNSNRFDVPMLAEEFLRAGVEFDFSKCKLIDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 +I H R +L + + Y Sbjct: 126 NIF---HKMERRNLAAAYEFY 143 >gi|322385196|ref|ZP_08058843.1| DNA polymerase III [Streptococcus cristatus ATCC 51100] gi|321270820|gb|EFX53733.1| DNA polymerase III [Streptococcus cristatus ATCC 51100] Length = 814 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 7/115 (6%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+ D+ L+ P FS + E ++ ++A ++AHN KFD + L D L P Sbjct: 57 QLTGLDDQRLRQAPDFSQVAREVYELI--EDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC+ I + + H AL D+ + +++K+ Sbjct: 115 R--VDTVELAQVFYPTFDKYALGNLCELLEIPL--ENAHTALADAQATAQLFLKI 165 >gi|227538997|ref|ZP_03969046.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] gi|227241200|gb|EEI91215.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] Length = 203 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 12/166 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I F++ T +S + +G V + D F + P + + ++HGI + Sbjct: 9 IDFELATAAYNS----VCSVGIVRV-DQGVITDEFYSLVKPPKNEYMWQTTRVHGIKPKD 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRIIDTL 127 D P+F I+ + D QN + +AHN KFD ++ ++ D L + + Sbjct: 64 TADAPTFEEIYPKIKDLL--QNKKMVAHNEKFDREVLSKTMKACGLDYRELHLPVMWECT 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 S R + LN C+ GI ++H H AL D+ + +Y+K Sbjct: 122 SKIYRDKGFKKTKLNLCCEIMGIDLNH---HEALSDAKAAAFLYLK 164 >gi|330832545|ref|YP_004401370.1| Rad3-related DNA helicase [Streptococcus suis ST3] gi|329306768|gb|AEB81184.1| Rad3-related DNA helicase [Streptococcus suis ST3] Length = 837 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLD-YSKTNRTFQVFLCPNGRKNSPEALK 61 R V D+E TG + + +II+IG V E++D Y+ ++ L + KN Sbjct: 27 RYAVVDLEATGTGT-DAKIIQIGIVLVENGEIIDSYATDINPYE--LLDDHIKN------ 77 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L P F + S +D +A ++AHN KFD + L + L P Sbjct: 78 LTGITDQQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTPR 135 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCK--RYGITISHRSKHGALLDSHLL 167 +DT+ +++ P+ + L +L + G+ +H + A+ + LL Sbjct: 136 --VDTVELSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDAMATARLL 182 >gi|146284212|ref|YP_001174365.1| exonuclease [Pseudomonas stutzeri A1501] gi|145572417|gb|ABP81523.1| exonuclease [Pseudomonas stutzeri A1501] gi|327482571|gb|AEA85881.1| exonuclease [Pseudomonas stutzeri DSM 4166] Length = 235 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 17/177 (9%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALK 61 + R +V D+ETTGL K D +I IGAV + +DYS+ F+ LC + N E++ Sbjct: 37 QQRLVVLDLETTGLHLKRDLVIAIGAVVIEDGAIDYSQ---QFECTLCRQVKVN--ESVL 91 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI L + + F +F + +A +A FD + L+ L+ S Sbjct: 92 IHGIAPSELANGLPPAEALLSFMEF--AAGSIVLAFHAPFDQRMLGRALKNELGYSLENS 149 Query: 122 RIIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +D +A P + R L+ + I I R H A D+ +++ + ++ Sbjct: 150 -FLDVADLAPMLFPEAMIHRGSLDHWLDYFNIHIPQR--HNASADAMATAEIALILL 203 >gi|303236025|ref|ZP_07322628.1| exonuclease [Prevotella disiens FB035-09AN] gi|302483898|gb|EFL46890.1| exonuclease [Prevotella disiens FB035-09AN] Length = 284 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGLD DRII+I +++ R +++ P ++ E ++L GI+D Sbjct: 10 IVFDLETTGLDLVKDRIIQISYIKVSPNGDEERE-NLYINPE-KEIPKEVVELTGISDAD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSRIIDTL 127 + P+F E D F ++ N+ +FDV + E R D R+ID Sbjct: 68 VASAPTFKQKAKELADKF--IGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFSKCRLIDAQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRY 148 +I H R +L + + Y Sbjct: 126 NIF---HKMERRNLAAAYEFY 143 >gi|28899929|ref|NP_799584.1| putative DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] gi|260363223|ref|ZP_05776092.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|260880510|ref|ZP_05892865.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|260898537|ref|ZP_05907033.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|28808212|dbj|BAC61417.1| putative DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308085005|gb|EFO34700.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308092696|gb|EFO42391.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|308112379|gb|EFO49919.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] Length = 236 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 12/167 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTG+D++ D+I+ IG V+L LD + + ++C +G+ PE K++G+T + Sbjct: 53 VALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYIC-HGQFIKPETAKINGLTPQ 111 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + +AH + FI+A + P+ IDTL Sbjct: 112 DLAKGLPLDEGMNRLLKRITGKVV--LAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQ 169 Query: 129 I------ARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHLL 167 I A + S L+ L + Y + +SH + AL + L Sbjct: 170 IEKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELF 216 >gi|237755791|ref|ZP_04584393.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium yellowstonense SS-5] gi|237692054|gb|EEP61060.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium yellowstonense SS-5] Length = 203 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 13/172 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ETTGL+ K D I+ I AV++ D N F V + P+ R+ +A+K+HG+ + Sbjct: 35 VAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVRPD-REIIEDAIKIHGLRKK 93 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ F F + + + +FDV +N ++++ L P++ I+ + Sbjct: 94 DLESGIPIEEAVDRFAHFIGSR--PLVGYYLEFDVAMVNKYFKKLSGTTL-PNKQIEVSA 150 Query: 129 IARRKH----PSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + P DL +S+ K + I KH AL D+ + + +++K+ Sbjct: 151 LYYDFKIGLIPQGFVDLRFDSILK--DLDIPTFGKHDALNDAIMTALIFLKL 200 >gi|238854851|ref|ZP_04645181.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3] gi|260664138|ref|ZP_05864991.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US] gi|282933929|ref|ZP_06339277.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1] gi|313472352|ref|ZP_07812844.1| exonuclease [Lactobacillus jensenii 1153] gi|238832641|gb|EEQ24948.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3] gi|239529790|gb|EEQ68791.1| exonuclease [Lactobacillus jensenii 1153] gi|260562024|gb|EEX27993.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US] gi|281302018|gb|EFA94272.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1] Length = 177 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 7/116 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + +H IT +KD P+ + ++ + D + + AHNAKFD + L R D + Sbjct: 50 ISVHQITPSDVKDAPTMAEVWPKIKDLY-QPGMLVAAHNAKFDANVLKMSLARY--DIAE 106 Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P +IDTL +R P N LN++ + + + H H AL DS + + IK Sbjct: 107 PHYLVIDTLKTSRLFEPDLPNHKLNTVSEALDVELWHH--HNALSDSEACAGILIK 160 >gi|262193953|ref|YP_003265162.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077300|gb|ACY13269.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 11/152 (7%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS-PEALKLH 63 M+ +VF D ETTGLD + I+EI A+ + + + R + + P +++ PEAL+++ Sbjct: 1 MQPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPEALEVN 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPS 121 G D S SE + A HN FD F+ A + P LD Sbjct: 61 GYRRRAWADAVSLGDAMSELAPML--EGAVLAGHNVAFDRSFLEAAWDYVGHRPENLD-H 117 Query: 122 RIIDTLSIARRKHPSSRND---LNSLCKRYGI 150 +DT ++A + D L +C G+ Sbjct: 118 HALDTATLAFPLLMAGEIDSLSLTPVCAHLGV 149 >gi|123968212|ref|YP_001009070.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. AS9601] gi|123198322|gb|ABM69963.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. AS9601] Length = 259 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 23/219 (10%) Query: 3 RKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEAL 60 + K+ KI + D ETTGLD D +IEIG + L D S QV FL P N+ EA Sbjct: 31 KNKKIEKILILDTETTGLDENKDEVIEIGCI-LFDVSFKCVLSQVSFLFP---VNNNEAE 86 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLD 119 ++GI+ E + + F + + +AHN +FD F L ++NK + Sbjct: 87 HVNGISAEVTNISQPWEDGLNFFLKLVDSSDFI-VAHNVEFDKKWFGKGRLPKLNKKWIC 145 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------ 173 ++ ++ + +K +R + L + I + + H AL D LS+V+ K Sbjct: 146 S---LEDINWSFQKSLKTRPSVTDLALSFSIPVWNL--HRALSDCFYLSEVFKKCDNLEE 200 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 +++ ++ F +K E +++P + K + P+ Sbjct: 201 LLLKATEPRFLYKA----LVSYEDRSLPKNAGFKWNSPV 235 >gi|270261380|ref|ZP_06189653.1| exodeoxyribonuclease X [Serratia odorifera 4Rx13] gi|270044864|gb|EFA17955.1| exodeoxyribonuclease X [Serratia odorifera 4Rx13] Length = 222 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 23/163 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GLD ++E+ +V+L+D N + P+ R S +A+ +H IT++ + Sbjct: 5 VIDTETCGLDGG---VVEVASVDLIDDHIAN-PMSDLVSPD-RPISIDAMAIHHITEQMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP + + + ++AHNA FD G + P I T+ +A Sbjct: 60 EGKPRIAVAIGRYLG-----SPYYVAHNAAFDRGVL----------PEMRGAWICTMKLA 104 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH-LLSDVYI 172 R +P + L RY + + + L H L D Y+ Sbjct: 105 RTLYPDIKYGNQYL--RYALNLEVQLPQDTTLYPHRALYDCYV 145 >gi|257467741|ref|ZP_05631837.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans ATCC 49185] gi|317062034|ref|ZP_07926519.1| exonuclease [Fusobacterium ulcerans ATCC 49185] gi|313687710|gb|EFS24545.1| exonuclease [Fusobacterium ulcerans ATCC 49185] Length = 186 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 23/188 (12%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGI 65 M+ + D ET G+ ++ I G V++ + F ++ P G + + EALK+ G Sbjct: 1 MKILFVDTETGGITERSALIQLSGIVQI--GKEVAEEFNFYIKPFPGSEVTDEALKIQGR 58 Query: 66 TDEFLKDKPSFSSIFSEFW-------DFFNEQNAEWIA-HNAKFDVGFINAELQR----- 112 T E ++ S +F +F D +N+++ + +N +FD+ IN L+R Sbjct: 59 TREEVETYDSEEEVFIKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINRFLKRNGEKY 118 Query: 113 ----INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 I LDP + I L + ++ N L + C +GI + H +L D Sbjct: 119 LFSYIQATTLDPLQWIAALQLLKKIPVLKDNKLETWCNHFGIEL---KAHDSLEDIKATK 175 Query: 169 DVYIKMMV 176 + KMM+ Sbjct: 176 ALTKKMML 183 >gi|221632364|ref|YP_002521585.1| exonuclease family [Thermomicrobium roseum DSM 5159] gi|221156848|gb|ACM05975.1| exonuclease family [Thermomicrobium roseum DSM 5159] Length = 982 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 15/167 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 + DIE TG+D + D IIE+ A++ + R F+ + P R+ P A+ L G+T Sbjct: 6 VALDIEATGMDPERDEIIEVAAIKFREEEVLER-FETLVQP--RRPVPLAVASLTGLTMR 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ PSF I F +N + + +D+ ++A + ++P + DT Sbjct: 63 DLRRAPSFQQIAPRLRQFV--RNYPIVGQSPDYDLQMLSAHGLEL-RNP-----VYDTFR 114 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A P L + R GI+++ +H A+ D V++ + Sbjct: 115 LATILLPDLPAYSLAGIAARLGISVAQ--QHRAMADVETTMAVFLGL 159 >gi|28377661|ref|NP_784553.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum WCFS1] gi|254555842|ref|YP_003062259.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum JDM1] gi|28270494|emb|CAD63396.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum WCFS1] gi|254044769|gb|ACT61562.1| DNA-directed DNA polymerase III, epsilon chain (putative) [Lactobacillus plantarum JDM1] Length = 173 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI + + D P F ++ FF +++ IAHNA FD+G + L Sbjct: 45 VQIHGIHEADVADAPKFPDVWQHIEPFF-QRDRLVIAHNAPFDIGVLRNTLAHYGISA-- 101 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + +DT+ ++R +P N L+++C+ I + H H AL DS +++ + Sbjct: 102 PEYLSMDTVKTSQRFYPELPNHKLDTVCQALDIDLQHH--HNALDDSLACANILL 154 >gi|330718588|ref|ZP_08313188.1| Rad3-related DNA helicase [Leuconostoc fallax KCTC 3537] Length = 798 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 11/168 (6%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + RII+IG + + K F+ F+ P G+ + +L I+ Sbjct: 12 VVVDLETTGQSVDRGGRIIQIG-MTFIKKRKIVDHFETFVNP-GQLIDRQIQQLTHISQN 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127 ++ P F I +++ IAHN FD ++N E +R PLD P+ IDT+ Sbjct: 70 EVQHAPYFEEIAPVIHTLL--KDSVIIAHNVNFDYPYLNEEFERAGLSPLDIPA--IDTV 125 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +++ P++ L L + I +S + H A D+H +++++ + Sbjct: 126 MLSQILLPTAPGYRLVDLTQYLDIKLS--NAHRANEDAHATAELFLSL 171 >gi|313123658|ref|YP_004033917.1| ATP-dependent DNA helicase ding [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280221|gb|ADQ60940.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 929 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 15/170 (8%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTG + DRII+ G + D + +T+ + P+ RK L GI + Sbjct: 11 VVDLETTGTRKEEGDRIIQFGCAIVKD-GEVVKTYSFMMNPH-RKIPLAVTNLTGIDQKM 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + F + + Q+ ++AHN FD F+N EL + L + +DT+ + Sbjct: 69 VAGQADFKHYAPKIREIL--QDKVFVAHNVNFDFPFLNYELTNAGFEALT-CKAVDTVEL 125 Query: 130 ARRKHPS----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ P+ DL + + I H + H A D++ + + +K++ Sbjct: 126 AKIAFPTLPSYKLRDLTA-----SLEIKHANPHKADSDAYGTAVLLLKII 170 >gi|46205666|ref|ZP_00048224.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 187 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 15/149 (10%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTGLD DR++ A+ L + T+ + +L G + EA +HGIT+ Sbjct: 14 LDTETTGLDVDVDRVVT-AALVLREPGATH--VRTWLLDPGVEIPAEATGIHGITNAHAT 70 Query: 72 DKPSFSSI-FSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRINKDPLD-----PSR 122 S ++ E +A+NA FD+ ++ EL R L P R Sbjct: 71 AHGSAPAVALDEIATLVVDAQRDGVPLVAYNAAFDLAILDTELVRHGLPTLAARLGRPVR 130 Query: 123 -IIDTLSIARRKHPS--SRNDLNSLCKRY 148 ++D L + R P+ + L LC RY Sbjct: 131 PVLDPLVLDRAWDPARDGKRRLVDLCARY 159 >gi|27468497|ref|NP_765134.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis ATCC 12228] gi|57867358|ref|YP_189001.1| exonuclease [Staphylococcus epidermidis RP62A] gi|251809901|ref|ZP_04824374.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis BCM-HMP0060] gi|282874556|ref|ZP_06283441.1| exonuclease [Staphylococcus epidermidis SK135] gi|293367792|ref|ZP_06614441.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W2(grey)] gi|27316044|gb|AAO05178.1|AE016749_124 DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis ATCC 12228] gi|57638016|gb|AAW54804.1| exonuclease [Staphylococcus epidermidis RP62A] gi|251806566|gb|EES59223.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis BCM-HMP0060] gi|281296695|gb|EFA89204.1| exonuclease [Staphylococcus epidermidis SK135] gi|291318131|gb|EFE58528.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W2(grey)] gi|329726906|gb|EGG63364.1| exonuclease [Staphylococcus epidermidis VCU144] gi|329734711|gb|EGG71017.1| exonuclease [Staphylococcus epidermidis VCU045] gi|329734804|gb|EGG71109.1| exonuclease [Staphylococcus epidermidis VCU028] Length = 184 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 11/156 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET +SK I +G V+++D ++ +F + P + +HGI E Sbjct: 7 VALDFETA--NSKRTSICSVGMVKVID-NQITESFHTLVNPFDYFTETN-ITVHGIHPED 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTLS 128 ++D P F ++ F ++ +AHNA FD+ ++ L+ N D PS + Sbjct: 63 VQDAPGFKHVYPYMLKFIDQ--LPVVAHNAAFDMNVLHQSLKSHNIDT--PSLTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +A+R + R L L Y + H AL D+ Sbjct: 119 LAKRTINAYRYGLKHLMNHYHLDF--HGHHDALNDA 152 >gi|304411957|ref|ZP_07393568.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS183] gi|307303275|ref|ZP_07583030.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica BA175] gi|304349817|gb|EFM14224.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS183] gi|306913635|gb|EFN44057.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica BA175] Length = 228 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 29/186 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + D+E TGL+ + D+I+ IG V E+ + Q+ R + ++ +HG Sbjct: 43 VAMDLEMTGLNPQQDQILSIGLVPIEHGEIPLARAEQKLVQI------RGSVGQSATIHG 96 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLD-PSR 122 I D L + W F N+ +AH+A D F+ +L I L P+ Sbjct: 97 ILDNHLVQAVTIEEAMG--W-FINQTYGRVLVAHHAPLDCRFLQQDLLAIYHQALVLPA- 152 Query: 123 IIDTLSIARRKHPSSRN-------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDTL + R + ++ L + +RYG+ I + H AL D+ ++ + M Sbjct: 153 -IDTLMLERHRLLREQSVIKEGSLRLGACRERYGLPI--YTAHSALTDALACGELLLAQM 209 Query: 176 --VGGS 179 +GG+ Sbjct: 210 AAMGGA 215 >gi|257870106|ref|ZP_05649759.1| exonuclease [Enterococcus gallinarum EG2] gi|257804270|gb|EEV33092.1| exonuclease [Enterococcus gallinarum EG2] Length = 180 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 7/116 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI E + + P F I+ + ++N N+ +AHNA FD G + L + Sbjct: 53 IQIHGIHPEDVVNAPKFPDIWKQIQQYYN-LNSLIVAHNAGFDTGVLAGCLDYYGIE--Q 109 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P+ + + T+ +R+ +P N LN++C++ I + + H AL DS + + ++ Sbjct: 110 PNYLSLCTVRTSRKLYPEFENHKLNTVCQQLQIPL--LNHHDALEDSRACAQILLR 163 >gi|220918921|ref|YP_002494225.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter dehalogenans 2CP-1] gi|219956775|gb|ACL67159.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter dehalogenans 2CP-1] Length = 200 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/176 (20%), Positives = 79/176 (44%), Gaps = 17/176 (9%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF 69 D+ET GLD++ D I+ +G + + + + + ++ + P +G+ SP +++ H + Sbjct: 16 LDLETGGLDARRDAILAVGMLPVREGHLRLGEAYRTLVRPEHGKAVSPRSVQAHQLVAGD 75 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLS 128 + P + + E + A + H+A ++GF+ + + P P ++DT+ Sbjct: 76 TRGAPPLAEVLPELERRL--RGAVLLVHHAPIELGFLKRAFRAAGLRWPGPP--VVDTVK 131 Query: 129 IA-------RRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + RR P D LN R + + H AL D+ +++++ + Sbjct: 132 LLLRLDARERRSFPELPADPPVLNLSAARRRLGLPDYQAHDALTDAVATAELFLVL 187 >gi|56460528|ref|YP_155809.1| DNA polymerase III subunit epsilon [Idiomarina loihiensis L2TR] gi|56179538|gb|AAV82260.1| 3'-5' exonuclease/DnaQ family enzyme [Idiomarina loihiensis L2TR] Length = 248 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 5/131 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 NK + D ETTGLD + I+ I A+ + + ++ R + E++ +HG Sbjct: 54 NKTPMVAVDFETTGLDPEQHGIVSIAAIPMTTERILFSEAKSWVVKPRRSLTDESVVIHG 113 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRI 123 IT ++ P SI E + W+ H + F+ + +R++++ P + Sbjct: 114 ITHSEIEHAPDLESIIDELLELVA--GKVWVVHYHGIERPFLQRGIKERLHENIQFP--L 169 Query: 124 IDTLSIARRKH 134 IDT+ I R H Sbjct: 170 IDTMEIEARFH 180 >gi|288941633|ref|YP_003443873.1| ribonuclease T [Allochromatium vinosum DSM 180] gi|288897005|gb|ADC62841.1| ribonuclease T [Allochromatium vinosum DSM 180] Length = 226 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G D++ ++E+ AV + S + T + P G + P AL +G Sbjct: 21 VVVDVETAGFDAQRHALLEVAAVIIRQRSDGLLEPAPTLACHVLPFVGSELDPRALAFNG 80 Query: 65 ITD-----EFLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRIN-- 114 I + + + + I + A + HNA FD+GFI A ++R Sbjct: 81 IDPHHPFRDAISEHDALERILTPIRKAVKSTGCNRAILVGHNAHFDLGFIKAAVERTGYK 140 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P + DT+++ + L + G+ H H A D+ + ++ + Sbjct: 141 RNPFHAFSVFDTVTLGGLMF--GQTVLAKASRAAGLHWKHSEAHSAAYDAEQTARLFCAV 198 Query: 175 M 175 + Sbjct: 199 V 199 >gi|157283974|ref|YP_001468242.1| exonuclease RNase T and DNA polymerase III [Kineococcus radiotolerans SRS30216] gi|151363116|gb|ABS06118.1| Exonuclease RNase T and DNA polymerase III [Kineococcus radiotolerans SRS30216] Length = 203 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D E+T LD + ++EI ++ F + P P A +HGI DE Sbjct: 50 VLLDTESTALDGQ---LVEIAITDVHGAP----LFSSLVRPT-TPVDPGARAVHGIGDEE 101 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 L+D P + + ++ IA+NA+FD G + E +RI D L +R Sbjct: 102 LQDAPDLLMVAPQLRAALAGRHV--IAYNARFDRGLLRREGERIGVDLLSSTR 152 >gi|260902236|ref|ZP_05910631.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|308110524|gb|EFO48064.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] Length = 236 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 12/166 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTG+D++ D+I+ IG V+L LD + + ++C +G+ PE +++G+T + Sbjct: 53 VALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYIC-HGQFIKPETAQINGLTPQ 111 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + +AH + FI+A + P+ IDTL Sbjct: 112 DLAKGLPLDEGMNRLLERITGKVV--LAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQ 169 Query: 129 I------ARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166 I A + S L+ L + Y + +SH + AL + L Sbjct: 170 IEKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAEL 215 >gi|167035772|ref|YP_001671003.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1] gi|166862260|gb|ABZ00668.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1] Length = 201 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 13/166 (7%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGI 65 R V D ETTG+ R E+ AV +L+ + +Q + N P L GI Sbjct: 3 RIAVIDFETTGVSPGAGCRATEV-AVVMLEGGRIVERYQSLM--NAGVPVPAFVAGLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T L+ P + +E +F +AHNA FD F + EL RI + P Sbjct: 60 TTAMLRTAPPVDKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELSRIGRSRSQP--FAC 115 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGIT---ISHRSKHGALLDSHLL 167 +L ++RR P++ N L +L + G+ +HR+ A + ++LL Sbjct: 116 SLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLL 161 >gi|312140266|ref|YP_004007602.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S] gi|311889605|emb|CBH48922.1| putative DNA polymerase III epsilon subunit [Rhodococcus equi 103S] Length = 228 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 10/150 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETTG D + RI+ V + +R ++ G + +A +HGI+ Sbjct: 11 AFDLETTGRDPLSARIVTGSVVTVGGEGHRSRN---WIVDPGVEIPVDAAAVHGISTAQA 67 Query: 71 KDKPS-FSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 +++ ++S + E + A +A NA +D+ ++AE +R+ PL ++D Sbjct: 68 RERGQDYASGYREIRSALTDAWAAGHVVVAFNAAYDLTVLDAEGRRLGWPPLSGYGLVVD 127 Query: 126 TLSIARRKHPSSRN--DLNSLCKRYGITIS 153 I R R L++LC+ YG+ ++ Sbjct: 128 PYVIDREMDRDRRGKRTLSALCEHYGVVLA 157 >gi|229592763|ref|YP_002874882.1| putative exonuclease [Pseudomonas fluorescens SBW25] gi|229364629|emb|CAY52540.1| putative exonuclease [Pseudomonas fluorescens SBW25] Length = 203 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 17/173 (9%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65 R V D ETTG+ + R EI AV +L+ + +Q + N P + +L GI Sbjct: 3 RIAVIDFETTGITPNSHCRATEI-AVVILERGQIVDRYQSLM--NAGVRVPGFIEQLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ L+ P + +E +F +AHNA FD F + EL I + L + Sbjct: 60 SNAMLRSAPPAERVMNEVNEFVG--TTPLMAHNAAFDQKFWDYELGLIRRTRLQ--KFAC 115 Query: 126 TLSIARRKHPSSRN----DLNSLCKRYGITISHR----SKHGALLDSHLLSDV 170 +L +ARR P++ N LN+ + +HR ++ A L +HL ++ Sbjct: 116 SLLLARRLMPTAPNHKLGTLNAFAQLPHTGKAHRAMADAEMAANLTAHLAQEL 168 >gi|160689368|gb|ABX45542.1| polymerase C [Bacillus amyloliquefaciens] gi|160689370|gb|ABX45543.1| polymerase C [Bacillus amyloliquefaciens] gi|160689396|gb|ABX45556.1| polymerase C [Bacillus amyloliquefaciens] gi|160689398|gb|ABX45557.1| polymerase C [Bacillus amyloliquefaciens] gi|160689444|gb|ABX45580.1| polymerase C [Bacillus amyloliquefaciens] Length = 259 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +R+ K + +IDTL +AR +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNVAYKRLLKTEKAKNPVIDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQ 180 + D+ + +KM+ ++ Sbjct: 59 VFDAEATGYLLLKMLKDAAE 78 >gi|332532199|ref|ZP_08408080.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332038297|gb|EGI74742.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 671 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 6/102 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 V DIETTG +RI EIG V++ + K T+ + P ++ P + L GI+D Sbjct: 569 VVDIETTGGLKGGNRITEIGIVKV-RHGKVIDTWTSLVNP--ERHIPGFITSLTGISDSM 625 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + + P F+ I D + ++AHN FD GFI E + Sbjct: 626 VYNAPVFADIVKPLLD--KLAGSIFVAHNVNFDYGFIKKECE 665 >gi|229005847|ref|ZP_04163541.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4] gi|228755311|gb|EEM04662.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4] Length = 286 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 13/116 (11%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLD 119 L GIT+ + P+ + F F E +AHNA FD+ F+ NA + R+ P Sbjct: 32 LTGITNYRVSGAPTIQEVLPLFLAFLGEDTI--VAHNASFDMRFLKSNANMLRL---PEP 86 Query: 120 PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +IDT+ +A+R KH + + L +L + GI + S H AL D + VY K Sbjct: 87 KNIVIDTVFLAKRYMKH-APNHKLETLKRMLGIRL---SSHNALDDCITCAAVYQK 138 >gi|160689332|gb|ABX45524.1| polymerase C [Bacillus amyloliquefaciens] gi|160689388|gb|ABX45552.1| polymerase C [Bacillus amyloliquefaciens] gi|160689406|gb|ABX45561.1| polymerase C [Bacillus amyloliquefaciens] gi|160689408|gb|ABX45562.1| polymerase C [Bacillus amyloliquefaciens] Length = 259 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +R+ K + +IDTL +AR +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNVAYKRLLKTEKAKNPVIDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQ 180 + D+ + +KM+ ++ Sbjct: 59 VFDAEATGYLLLKMLKDAAE 78 >gi|146301193|ref|YP_001195784.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] gi|146155611|gb|ABQ06465.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] Length = 453 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 9/160 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI A+ D + F + P P +KL GI + L Sbjct: 4 ILDIETTGGQFNEEGITEI-AIYKFDGHEVVDQFISLVNPE-IPIQPFVVKLTGINNAML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + + + +AHNA FD + E +R+ D ++ + T+ +A Sbjct: 62 RSAPKFYEVAKRIIEI--TTDCVIVAHNASFDYRILRTEFRRLGYD--FEAKTLCTVELA 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167 ++ P + L L + GI ++ HR+ A+ + L Sbjct: 118 KKLIPEQPSYSLGKLVRALGIPMADRHRASGDAMATTKLF 157 >gi|222081448|ref|YP_002540811.1| DNA polymerase III subunit epsilon [Agrobacterium radiobacter K84] gi|221726127|gb|ACM29216.1| polymerase epsilon subunit protein [Agrobacterium radiobacter K84] Length = 340 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 16/107 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGL+ +ND IIEIG V D+ V+ L G PE +L GI Sbjct: 89 VILDTETTGLNHRNDEIIEIGLVAFTFDDFGHIGDVIGVYGGLQQPGTPIPPEITRLTGI 148 Query: 66 TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 TDE ++ D + + D IAHNA FD F A Sbjct: 149 TDEMVEGQMIDMQQVRRMVAPA-DLV-------IAHNAGFDRPFCEA 187 >gi|227431886|ref|ZP_03913909.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352353|gb|EEJ42556.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 797 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 15/169 (8%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG K RII+IG + + + F+ F+ P G+ + +L I+ + Sbjct: 8 VVVDLETTGHSVKKGGRIIQIG-MTFIKKRQIVDHFESFVNP-GQLIDRQIQQLTHISQK 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P F I + QN IAHN FD ++N E +R L S IDT+ Sbjct: 66 DVQNAPYFEEIAPLLQNLL--QNTVIIAHNVNFDYPYLNDEFERTGFQLLK-SAAIDTVQ 122 Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A+ P + DL + + I+ ++ H A D+H + +++K Sbjct: 123 LAQILFPMAPGYRLLDLTTY-----LNITLKNAHRANADAHATALLFLK 166 >gi|160689336|gb|ABX45526.1| polymerase C [Bacillus amyloliquefaciens] Length = 259 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +R+ K + +IDTL +AR +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNVAYKRLLKTEKAKNPVIDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQ 180 + D+ + +KM+ ++ Sbjct: 59 VFDAEATGYLLLKMLKDAAE 78 >gi|157736764|ref|YP_001489447.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] gi|315635941|ref|ZP_07891202.1| exonuclease [Arcobacter butzleri JV22] gi|157698618|gb|ABV66778.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018] gi|315479725|gb|EFU70397.1| exonuclease [Arcobacter butzleri JV22] Length = 203 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 9/170 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+ K D I+ IGAV + D R TF +FL P+ N E++K+H + Sbjct: 32 VSLDCETTGLNPKKDEILSIGAVLIKDNKILMRKTFNIFLKPSKDINI-ESIKVHHLRQI 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D + DF + + + +FD+ I+ ++ L P+ I+ S Sbjct: 91 DLNDALEPEIGIYQLLDFIGSR--PIVGYYIEFDMAIISKYTKKYLGIKL-PNTPIEVSS 147 Query: 129 IARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I S+ N DL + I KH AL D+ + S +++K+ Sbjct: 148 IYYDSRKSTSNYGFIDLKFDTIMKNLNIPVLGKHDALNDAIMTSMIFLKL 197 >gi|254514041|ref|ZP_05126102.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium NOR5-3] gi|219676284|gb|EED32649.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium NOR5-3] Length = 183 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 15/175 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M ++ D E +GLD ++ +G V + + + L N R++ ++ +H + Sbjct: 1 MSFLICDAEMSGLDPAKAELLSMGWVRVEGLEIVMGSAEHRLIRN-RRSVGQSATIHQLR 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-AELQRINKDPLDPSRIID 125 D L++ + + S+F + HNA+ D F++ A Q L P+ +D Sbjct: 60 DCELREADDITEVLSDFLQ--AAAGCVLVFHNARLDTAFLDRAAKQAFGTPLLLPT--VD 115 Query: 126 TL-----SIARRKHPSSRNDLN-SLCK-RYGITISHRSKHGALLDSHLLSDVYIK 173 TL + R++ P + DL C+ RYG+ H S H AL D+ +++ + Sbjct: 116 TLWLEQRLLQRQERPIGQGDLRLGACRDRYGLI--HHSAHNALTDAMATAELLLA 168 >gi|170016856|ref|YP_001727775.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20] gi|169803713|gb|ACA82331.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20] Length = 177 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT + P F I+ F E +AHNA FD G + L D +P Sbjct: 52 IHGITAADVAQAPKFPEIWDMIAPLFTEDKL-VVAHNAAFDNGILKGTLDYY--DIAEPH 108 Query: 122 -RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++DT+ +R+ P +N LN++ + GIT+ H H AL D+ +++ I Sbjct: 109 YMLLDTVRSSRQLFPDFKNHKLNTVAQNLGITLDHH--HNALDDAVAAANILI 159 >gi|322804522|emb|CBZ02073.1| putative DNA polymerase III epsilon chain [Clostridium botulinum H04402 065] Length = 309 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 10/169 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KD+ F I+ + D+FN N IAHNA FD+ + + L+ N + I T Sbjct: 58 PHMVKDELEFDKIWGKIKDYFN--NNLVIAHNASFDMSVLKSTLKLYN-IKMPSFEYICT 114 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ + + N LN++ G H H AL D+ S++ I + Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKH---HDALADAMACSNILINI 160 >gi|258512426|ref|YP_003185860.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479152|gb|ACV59471.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 218 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 12/170 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ET+G D+I+ + +S + + +F + + + P + +L G+T E Sbjct: 32 VLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAIVRHDDVADVPSHIWELTGLTPE 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQRINKDPLDPSRIID 125 ++D + + W+AH+ + D+GF+ L R+ PL + Sbjct: 92 AMRDGEPLEVALRRALELGAGRV--WVAHHVRHDLGFLQRATDALWRLRLRPLAMDTAVV 149 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P + L+ C+ GI + R H A D + + V+ K M Sbjct: 150 AQVLARAARPLT---LDEACEWLGIPVVGR--HRADADVRMTAAVWRKEM 194 >gi|25026770|ref|NP_736824.1| DNA polymerase III subunit epsilon [Corynebacterium efficiens YS-314] gi|23492049|dbj|BAC17024.1| putative DNA polymerase III [Corynebacterium efficiens YS-314] Length = 420 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 5/107 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + I+++G+ R+I A+ L ++ TF L P + P LHG+TDE Sbjct: 92 VAVTIQSSGIHPSTSRMITFTAITLTADNEPVETFHAVLNPG---SDPGPFHLHGVTDEE 148 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + FS I + + I HNA GFI +E +R D Sbjct: 149 FRSARRFSQILKAVDRLIDGRT--LILHNAPRTWGFIVSEAKRAMND 193 >gi|262341288|ref|YP_003284143.1| DNA polymerase III subunit epsilon [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272625|gb|ACY40533.1| DNA polymerase III subunit epsilon [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 256 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 16/163 (9%) Query: 12 FDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FDIE TG++ DRIIEI +++ + ++ ++T+ V CP G P++ +HGI +E + Sbjct: 12 FDIEATGINIGKDRIIEISILKIFPNGNQEDKTWLV--CP-GIPIPPQSTAIHGIKNEDV 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQR--INKDPLDPSRIIDTL 127 + K F + F F +N + +N+ +FD+ + E+ R I+ D + + ID Sbjct: 69 EGKLKFKDV--AFSIFKMIENTDLAGYNSNRFDIPILAEEMLRAGISFD-IKKHKTIDVQ 125 Query: 128 SIARRKHPSSRNDLNSLCKRYG---ITISHRSKHGALLDSHLL 167 I + P + L++ K Y + +H SK A +L Sbjct: 126 VIFHKMEPRT---LSAAYKYYCSKELIKAHSSKEDAFATYEIL 165 >gi|240142188|ref|YP_002966698.1| putative Exonuclease [Methylobacterium extorquens AM1] gi|240012132|gb|ACS43357.1| putative Exonuclease [Methylobacterium extorquens AM1] Length = 190 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 50/130 (38%), Gaps = 12/130 (9%) Query: 11 VFDIETTGLDS--------KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 FD ETTG + + RI+EIG V TF+ FL P+G E L Sbjct: 4 AFDTETTGTPAPGLPLRHPRQPRIVEIGCVLYYPDGAVADTFRTFLRPDGFTIPMEMRDL 63 Query: 63 HGIT-DEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQRINKDPLDP 120 HGIT ++ + F +F A IA H FD + E+ DP P Sbjct: 64 HGITVSAARREGLPAAEAFGRLKEFL--AGAGRIAVHFVPFDATMVAIEIAHGAPDPFGP 121 Query: 121 SRIIDTLSIA 130 R S A Sbjct: 122 GREFACTSAA 131 >gi|212211731|ref|YP_002302667.1| ribonuclease T [Coxiella burnetii CbuG_Q212] gi|212010141|gb|ACJ17522.1| ribonuclease T [Coxiella burnetii CbuG_Q212] Length = 221 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 21/182 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLC---P-NGRKNSPEALKLH 63 +V DIET GL+ + ++EI AV L++ +K + Q +F C P G P +L++ Sbjct: 21 VVVDIETGGLEPLKNPLLEIAAV-LVEVNKEGQLCQGELFACHVLPFEGAALDPASLEIT 79 Query: 64 GITDEF------LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQR-- 112 I D + + +K + +F+ N + A + HNA FD+ FI A ++R Sbjct: 80 RI-DPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCK 138 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + K P DT ++A + L + + + H A+ D+ ++++ Sbjct: 139 LKKSPFHAFTCFDTATLAAIVF--GKTVLAKALRAANLPFDKKEAHSAIYDAKCAAELFC 196 Query: 173 KM 174 K+ Sbjct: 197 KI 198 >gi|227546804|ref|ZP_03976853.1| DNA polymerase III, alpha subunit (gram-positive type) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|317481634|ref|ZP_07940669.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA] gi|322691564|ref|YP_004221134.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217] gi|227212766|gb|EEI80647.1| DNA polymerase III, alpha subunit (gram-positive type) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|316916924|gb|EFV38311.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA] gi|320456420|dbj|BAJ67042.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM 1217] Length = 235 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 11/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + I EIGAV + + ++ FQ + P R + L GITD Sbjct: 35 VALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNPL-RPIPRQITTLTGITDAM 92 Query: 70 LKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + D + F + A + HN FD+ F++ + I + Sbjct: 93 VADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD-Y 151 Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 DT+ I+R P+ R+ L L R+G I+ +H AL D+ Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFG--IADNEEHRALSDA 190 >gi|255547339|ref|XP_002514727.1| exonuclease, putative [Ricinus communis] gi|223546331|gb|EEF47833.1| exonuclease, putative [Ricinus communis] Length = 501 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%) Query: 12 FDIETTGLDSKND--RIIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 FD+ETT + I+E GA+ EL YS R + L SP +++ Sbjct: 15 FDLETTVPNRPGQGFAILEFGAILVCSRKLEELHSYSTLVRPANLSLI------SPTSVR 68 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120 +GIT + + P+F+ I ++ N + W HN +FD I I + P + Sbjct: 69 CNGITHDAVVLAPTFAEIADIVYEILNGRI--WAGHNIQRFDCVRIREAFAEIGRQPPEN 126 Query: 121 SRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156 IIDTL++ K D+ SL +G+ +HRS Sbjct: 127 KGIIDTLALLTHKFGRRAGDMKMASLATYFGLGKQTHRS 165 >gi|160689434|gb|ABX45575.1| polymerase C [Bacillus amyloliquefaciens] Length = 259 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +R+ K + +IDTL +AR +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNVAYKRLLKPKKAKNPVIDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQ 180 + D+ + +KM+ ++ Sbjct: 59 VFDAEATGYLLLKMLKDAAE 78 >gi|323499174|ref|ZP_08104152.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] gi|323315807|gb|EGA68840.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] Length = 239 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 25/172 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLDS+ D II IG V L+ N+ + P + + E++ +HGIT Sbjct: 50 LAMDFETTGLDSEQDDIITIGTVPFTLNRILVNQAKHWTVRPR-KPLAEESVVIHGITHS 108 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127 + D P + ++ + N + H + + F N LQ RI + P ++DT+ Sbjct: 109 DVLDAPDLTEVYPQV--LAEMSNRIMVVHYQRIEREFFNRALQTRIQEGIEFP--VVDTM 164 Query: 128 SI---------------ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +I R + P S L + RYG + + H AL D+ Sbjct: 165 NIETLWQQKENGGLLNKMRGRKPESVR-LGASRSRYG--LPQYTPHHALTDA 213 >gi|322689603|ref|YP_004209337.1| exonuclease [Bifidobacterium longum subsp. infantis 157F] gi|320460939|dbj|BAJ71559.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F] Length = 235 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 11/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + I EIGAV + + ++ FQ + P R + L GITD Sbjct: 35 VALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNPL-RPIPRQITTLTGITDAM 92 Query: 70 LKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + D + F + A + HN FD+ F++ + I + Sbjct: 93 VADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD-Y 151 Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 DT+ I+R P+ R+ L L R+G I+ +H AL D+ Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFG--IADNEEHRALSDA 190 >gi|297155821|gb|ADI05533.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis BCW-1] Length = 241 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 23/160 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 FD ETTG+D + DRI+ V + + P PEA +HG+TD Sbjct: 11 AFDTETTGIDVEQDRIVSAALVVQRGAGSLPEVRRWLVSPG--IPVPEAASAIHGLTDSH 68 Query: 70 LKDKPSF-SSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKDP-------- 117 L+ + + + E EQ A + NA FD+ ++ EL+R Sbjct: 69 LQRHGRWPAPVVDEVARALAEQAARGTPVVVMNAPFDLTLLDRELKRHRNASLSTYVSLR 128 Query: 118 ----LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153 LDP R++D RK R L LC YG+ ++ Sbjct: 129 SLTVLDP-RVLDKHLDRYRK---GRRTLTDLCAHYGVELT 164 >gi|222823839|ref|YP_002575413.1| exonuclease [Campylobacter lari RM2100] gi|222539061|gb|ACM64162.1| conserved hypothetical protein, putative exonuclease [Campylobacter lari RM2100] Length = 459 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 5/101 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K+ IV D ETTGL D I+++ ++ Y ++ F+ P + EA K+HGI Sbjct: 148 KLNVIVIDTETTGLREWEDEILQLSIIDETGYLIFDKYFK----PKYKSTWIEAQKIHGI 203 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 F+++K S + + FN+ + I +N FD+ FI Sbjct: 204 KPAFVQNKASIDNYKIQLEKIFNDADVI-IGYNLDFDLKFI 243 >gi|163756168|ref|ZP_02163283.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] gi|161323780|gb|EDP95114.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] Length = 454 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 9/161 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI A+ D + F + P R+ P + L GI L Sbjct: 4 IVDIETTGGKYNEEGITEI-AIYRFDGHEVVDQFISLVNPE-REIQPFVVNLTGINSRML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +D P F + + ++ +AHNA FD + E +R+ + S + T+ ++ Sbjct: 62 RDAPKFYEVAKRIVEI--TEDCIIVAHNASFDYRILQLEFKRLGFEYKRKS--LCTVELS 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLLS 168 ++ P + L L + GI +S HR+ AL L Sbjct: 118 KKLIPEMESYKLGKLVRALGIPMSDRHRASGDALATVKLFQ 158 >gi|149194243|ref|ZP_01871340.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus TB-2] gi|149135418|gb|EDM23897.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus TB-2] Length = 248 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 14/174 (8%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEAL-KL 62 NK + D+E K +IIEIGAV+L + + +F ++ K+ P + K+ Sbjct: 62 NKSEYTILDLEVNNSKPKEGQIIEIGAVKLKNLVPIDEFSFLIY-----AKDIPRYVTKV 116 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 GI ++ LK++ S I +F F + + +AH A FD F+ + ++ + L+P Sbjct: 117 TGINNQMLKNEKSQKEILEKFRLFLGD--SVIVAHAADFDFNFLAKQFEKEDLGYLLNPH 174 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + T+++A++ ++R L L + + + H AL D+ + V++K + Sbjct: 175 --LCTITLAKKTLKANRYGLKYL--KEELNLPEEIDHRALGDARTTTRVFLKSL 224 >gi|297797093|ref|XP_002866431.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] gi|297312266|gb|EFH42690.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] Length = 484 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 22/159 (13%) Query: 12 FDIETTGL--DSKNDRIIEIGA--------VELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 FD+ETT + I+E G+ VEL +YS R + L +P ++K Sbjct: 16 FDVETTIPFRAGQGYAILEFGSILVCPKKLVELRNYSVLVRPANLNLI------TPRSVK 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120 +GI E ++ +F+ I +D + + W HN KFD I+ I +DP +P Sbjct: 70 CNGIKREDVESAATFADIADTVYDILHGRI--WAGHNILKFDCPRISEAFAEIGRDPPEP 127 Query: 121 SRIIDTLSIARRKHPSSRNDLN--SLCKRYGI-TISHRS 156 ID+L++ ++ D+ +L +G+ +HRS Sbjct: 128 KGTIDSLALLTQRFGRRAGDMKMATLASYFGLGNQTHRS 166 >gi|23464698|ref|NP_695301.1| exonuclease [Bifidobacterium longum NCC2705] gi|189438951|ref|YP_001954032.1| DNA polymerase III subunit alpha [Bifidobacterium longum DJO10A] gi|239620784|ref|ZP_04663815.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132392|ref|YP_003999731.1| polc [Bifidobacterium longum subsp. longum BBMN68] gi|23325262|gb|AAN23937.1| possible exonuclease [Bifidobacterium longum NCC2705] gi|189427386|gb|ACD97534.1| DNA polymerase III alpha subunit [Bifidobacterium longum DJO10A] gi|239516360|gb|EEQ56227.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772644|gb|ADQ02132.1| PolC [Bifidobacterium longum subsp. longum BBMN68] Length = 235 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 11/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + I EIGAV + + ++ FQ + P R + L GITD Sbjct: 35 VALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNPL-RPIPRQITTLTGITDAM 92 Query: 70 LKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + D + F + A + HN FD+ F++ + I + Sbjct: 93 VADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD-Y 151 Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 DT+ I+R P+ R+ L L R+G I+ +H AL D+ Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFG--IADNEEHRALSDA 190 >gi|319956599|ref|YP_004167862.1| exonuclease rnase t and DNA polymerase iii [Nitratifractor salsuginis DSM 16511] gi|319419003|gb|ADV46113.1| Exonuclease RNase T and DNA polymerase III [Nitratifractor salsuginis DSM 16511] Length = 294 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 11/133 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I+ D ETTG D++ DRI ++ + +LD S LC + +A+ +H IT Sbjct: 1 MKTIILDTETTGTDAE-DRICQLAYL-VLDESGEVVEHYNELCTPPLEIKYDAMAIHHIT 58 Query: 67 DEFLKDKPSFSSI--FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 E L+ KP+ + F + + +N + NA FD+ + E + R+I Sbjct: 59 PEMLEGKPACTETEGFRRLRELNSPENL-LVIQNAPFDLAMLEKEGFE------NRMRLI 111 Query: 125 DTLSIARRKHPSS 137 DT + R+ P S Sbjct: 112 DTFRLVRKFMPDS 124 >gi|300770507|ref|ZP_07080386.1| DNA-directed DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300762983|gb|EFK59800.1| DNA-directed DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 203 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 12/166 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I F++ T +S + +G V + D F + P + + ++HGI + Sbjct: 9 IDFELATAAYNS----VCSVGIVRV-DQGVITDEFYSLVKPPKNEYMWQTTRVHGIKPKD 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRIIDTL 127 D P+F I+ + D QN + +AHN KFD ++ ++ D L + + Sbjct: 64 TADAPTFEEIYPKIKDLL--QNRKMVAHNEKFDREVLSKTMKACGLDYRELHLPVMWECT 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 S R + LN C+ GI ++H H AL D+ + +Y+K Sbjct: 122 SKIYRDKGFKKTKLNLCCEIMGIDLNH---HEALSDAKAAAFLYLK 164 >gi|227548945|ref|ZP_03978994.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum DSM 44291] gi|227078970|gb|EEI16933.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum DSM 44291] Length = 472 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDE 68 + FD+ET + I +IG V ++D + R + P G P + +HGI+ E Sbjct: 123 VGFDVETA--NPAWGSICQIGLVRVIDGREVERVTWLCTPPPGLDEFDPSNVAIHGISAE 180 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 ++ P + E +F E +AHNA+FD + + + +D Sbjct: 181 TVEGSPPAAQRIDELVEFVGELPV--VAHNAQFDATALREACRAVGRD 226 >gi|33519827|ref|NP_878659.1| ribonuclease T [Candidatus Blochmannia floridanus] gi|54036331|sp|Q7VR55|RNT_BLOFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|33504172|emb|CAD83434.1| ribonuclease T [Candidatus Blochmannia floridanus] Length = 223 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 25/207 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ET+GL++ + ++EI + L + F + P G PEAL L+ Sbjct: 20 VVIDVETSGLNASTNALLEIATITLKMNEDGWLHVDNMLHFHIKSFP-GAILQPEALALN 78 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINK 115 I + ++ + IF Q A +AHNA FD F+ A +R N Sbjct: 79 KINPNSPLRFAVTEQEALVEIFKMVHVGIKAQQCNKAIIVAHNASFDHSFLMAATERTNN 138 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P P DT +++ + L+ C+ GI H AL D+ + ++ Sbjct: 139 IQDNPFHPFVTFDTAALSGLVF--GQTVLSKACEYAGIIFDKNKAHSALYDAEKTAILFC 196 Query: 173 KMM-----VGGSQINFGFKTNEDRFFK 194 ++ +GG TN + + K Sbjct: 197 TLVNAWKKLGGWPWKPSLITNNEGYHK 223 >gi|296454533|ref|YP_003661676.1| DNA polymerase III subunit epsilon [Bifidobacterium longum subsp. longum JDM301] gi|296183964|gb|ADH00846.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp. longum JDM301] Length = 235 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 11/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + I EIGAV + + ++ FQ + P R + L GITD Sbjct: 35 VALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNPL-RPIPRQITTLTGITDAM 92 Query: 70 LKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + D + F + A + HN FD+ F++ + I + Sbjct: 93 VADLDPIDKVLPRFIAWLATPAAGPTVEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD-Y 151 Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 DT+ I+R P+ R+ L L R+G I+ +H AL D+ Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFG--IADNEEHRALSDA 190 >gi|317489230|ref|ZP_07947747.1| exonuclease [Eggerthella sp. 1_3_56FAA] gi|325832235|ref|ZP_08165234.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1] gi|316911631|gb|EFV33223.1| exonuclease [Eggerthella sp. 1_3_56FAA] gi|325486071|gb|EGC88525.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1] Length = 998 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 9/149 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG +D + +I A + + + F F+ P G+ + L I D Sbjct: 43 VVLDTETTGFSFNHDELTQIAAARM-EQGEIVEWFITFVNP-GKPIPEDVAHLTDIHDSD 100 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P + ++ +F + A+ +AHNA+FD F + + PL + ID+L + Sbjct: 101 VADAPLPADALAKLVEFIGD--AKVVAHNAEFDRTFTT---RHPSGYPLLENTWIDSLDL 155 Query: 130 ARRKHPSSRND-LNSLCKRYGITIS-HRS 156 AR P ++ L L + +G +S HR+ Sbjct: 156 ARIALPRMKSHRLLDLVRAFGAPLSTHRA 184 >gi|29654993|ref|NP_820685.1| ribonuclease T [Coxiella burnetii RSA 493] gi|153207536|ref|ZP_01946219.1| ribonuclease T [Coxiella burnetii 'MSU Goat Q177'] gi|154706868|ref|YP_001423724.1| ribonuclease T [Coxiella burnetii Dugway 5J108-111] gi|165918353|ref|ZP_02218439.1| ribonuclease T [Coxiella burnetii RSA 334] gi|212217974|ref|YP_002304761.1| ribonuclease T [Coxiella burnetii CbuK_Q154] gi|29542262|gb|AAO91199.1| ribonuclease T [Coxiella burnetii RSA 493] gi|120576504|gb|EAX33128.1| ribonuclease T [Coxiella burnetii 'MSU Goat Q177'] gi|154356154|gb|ABS77616.1| ribonuclease T [Coxiella burnetii Dugway 5J108-111] gi|165918003|gb|EDR36607.1| ribonuclease T [Coxiella burnetii RSA 334] gi|212012236|gb|ACJ19616.1| ribonuclease T [Coxiella burnetii CbuK_Q154] Length = 224 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 21/182 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ--VFLCP----NGRKNSPEALKLH 63 +V DIET GL+ + ++EI AV L++ +K + Q +F C G P +L++ Sbjct: 21 VVVDIETGGLEPLKNPLLEIAAV-LVEVNKEGQLCQGELFACHVLPFEGAALDPASLEIT 79 Query: 64 GITDEF------LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQR-- 112 I D + + +K + +F+ N + A + HNA FD+ FI A ++R Sbjct: 80 RI-DPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCK 138 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + K P DT ++A + L + + + H A+ D+ ++++ Sbjct: 139 LKKSPFHAFTCFDTATLAAIVF--GKTVLAKALRAANLPFDKKEAHSAIYDAKCAAELFC 196 Query: 173 KM 174 K+ Sbjct: 197 KI 198 >gi|87302916|ref|ZP_01085720.1| exonuclease [Synechococcus sp. WH 5701] gi|87282412|gb|EAQ74371.1| exonuclease [Synechococcus sp. WH 5701] Length = 187 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 14/163 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITD 67 + D ET + D + + + + +RT+++ R SP + +HGIT Sbjct: 27 VALDFETA--NYSRDSVCSLAIIRVESLKVVSRTYRLI-----RPPSPHFMFTDIHGITW 79 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K +P+F ++ EF F E + AHNA FD + A P + + T+ Sbjct: 80 GDVKSEPTFKELWHEFRPLF-EGISFIAAHNASFDSSVMRACCDTYRIVPPG-APYLCTV 137 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +AR+ +L S+C G+ + H H AL D+ +++ Sbjct: 138 KLARQTWQLRPANLPSVCAYLGLHLEH---HNALSDAEACANI 177 >gi|330983214|gb|EGH81317.1| ribonuclease T [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 171 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 15/136 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +S D ++EI AV + +D + T+ + P G AL+ G Sbjct: 33 VVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTG 92 Query: 65 I-TDEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN-- 114 I D L+ ++ + + IF + A + HNA FD+GF+NA + R++ Sbjct: 93 IKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMK 152 Query: 115 KDPLDPSRIIDTLSIA 130 ++P P DT ++A Sbjct: 153 RNPFHPFSSFDTATLA 168 >gi|330505789|ref|YP_004382658.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] gi|328920075|gb|AEB60906.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] Length = 235 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 21/135 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--------KNSPEALK 61 + D+ETTGLD I+ +G V + Q C R + S E++ Sbjct: 46 VALDVETTGLDPHQHAIVSLGLVPM--------DLQRIRCAEARYWVVKPTSELSAESVT 97 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDP 120 H IT ++ P +S+ E + + +AH K + F++ L+ + + + P Sbjct: 98 FHHITHSDIRHAPRLASVLDELLEALAGKVV--VAHYRKIERNFLDQALRLHLGEGLMFP 155 Query: 121 SRIIDTLSIARRKHP 135 IIDT+ + R HP Sbjct: 156 --IIDTMELEARLHP 168 >gi|325068103|ref|ZP_08126776.1| Exonuclease RNase T and DNA polymerase III [Actinomyces oris K20] Length = 260 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/217 (22%), Positives = 82/217 (37%), Gaps = 45/217 (20%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNR-------TFQVFLCPNGRKNSPEALKLHG 64 FD ETTG+D DR++ V + T R + +L G + A +HG Sbjct: 28 FDTETTGVDPSGDRLVTAALV----WRATPRADGVRPQSVATWLADPGVEIPEAAAAVHG 83 Query: 65 ITDEFLK-DKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRIN------ 114 +T E + + + + +E + E A +A NA +D+ + AEL R Sbjct: 84 VTTERARAEGRPVTEVLAEVSEHLVEAMAAGTPVVAFNASYDLTLMEAELARHGLPTMRS 143 Query: 115 ---------KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 DPL R +D +R+ L LC+ YG+ + + H A +D Sbjct: 144 RLGRELGPIADPLVLDRAVDRYRRGKRR-------LGDLCEVYGVHVDE-ALHTAEVDVA 195 Query: 166 LLSDVYIKMMVGGSQIN-------FGFKTNEDRFFKE 195 DV + +++ F+ R + E Sbjct: 196 ATLDVLEALAAAHPKLSEVSPDELVAFQARAHRTWAE 232 >gi|238895034|ref|YP_002919768.1| ribonuclease T [Klebsiella pneumoniae NTUH-K2044] gi|238547350|dbj|BAH63701.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 197 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G ++K D ++EI A+ L +D + + T + P G PEAL +G Sbjct: 20 VVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQPEALAFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGF--INAELQRIN 114 I + + + +IF E + A +AHNA FD F AE + Sbjct: 80 INPHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLK 139 Query: 115 KDPLDPSRIIDTLSIA 130 ++P P DT +++ Sbjct: 140 RNPFHPFVTFDTAALS 155 >gi|254192262|ref|ZP_04898751.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pasteur 52237] gi|157987457|gb|EDO95233.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pasteur 52237] Length = 310 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 60/107 (56%), Gaps = 7/107 (6%) Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+F+ I ++ + + ++AHNA FD GF+ AE +R +P ++ T+ Sbjct: 1 MVRGAPTFADIAGALFERLDGKL--FVAHNASFDRGFLRAEFERAGI-AFNPD-VLCTVR 56 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 57 LSRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 101 >gi|257792837|ref|YP_003183443.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243] gi|257476734|gb|ACV57054.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243] Length = 966 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 9/149 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG +D + +I A + + + F F+ P G+ + L I D Sbjct: 11 VVLDTETTGFSFNHDELTQIAAARM-EQGEIVEWFITFVNP-GKPIPEDVAHLTDIHDRD 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P + ++ +F + A+ +AHNA+FD F + + PL + ID+L + Sbjct: 69 VADAPLPADALAKLVEFIGD--AKVVAHNAEFDRTFTT---RHPSGYPLLENTWIDSLDL 123 Query: 130 ARRKHPSSRND-LNSLCKRYGITIS-HRS 156 AR P ++ L L + +G +S HR+ Sbjct: 124 ARIALPRMKSHRLLDLVRAFGAPLSTHRA 152 >gi|68536400|ref|YP_251105.1| DNA polymerase III subunit epsilon [Corynebacterium jeikeium K411] gi|68263999|emb|CAI37487.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium K411] Length = 227 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 23/152 (15%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG+D K RI+ V + + + L G + +A +HGIT E+++ Sbjct: 17 FDLETTGVDPKTARIVTSALVTIKGRERNDIE---MLADPGVEIPQQASDVHGITTEYVR 73 Query: 72 DKPS-FSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-- 125 + + ++ + A I +NA +D+ + A L+PS +D Sbjct: 74 EHGQDHGEVLAKTIEGIRAAWRSGATLIVYNAAYDLSVLRA---------LEPSFTVDGP 124 Query: 126 -----TLSIARRKHPSSRNDLNSLCKRYGITI 152 + A+ ++ + L S+C+ YG+T+ Sbjct: 125 VFDPYVVDRAKDQYRKGKRTLESVCQHYGVTL 156 >gi|46190621|ref|ZP_00121275.2| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Bifidobacterium longum DJO10A] Length = 211 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 11/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + I EIGAV + + ++ FQ + P R + L GITD Sbjct: 11 VALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNPL-RPIPRQITTLTGITDAM 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + D + F + A + HN FD+ F++ + I + Sbjct: 69 VADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD-Y 127 Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 DT+ I+R P+ R+ L L R+G I+ +H AL D+ Sbjct: 128 DTMQISRALFPAQRHHRLADLIVRFG--IADNEEHRALSDA 166 >gi|87302291|ref|ZP_01085116.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH 5701] gi|87283216|gb|EAQ75172.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH 5701] Length = 297 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 18/169 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R ++ D ETTGLD + D IE+GAV L S Q+ L + N+ EA ++GI Sbjct: 66 RLLILDTETTGLDPERDHCIEVGAV-LFHVSSRAVLSQLSLLLPCQSNTAEA--INGIDA 122 Query: 68 EFLK-DKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFD-VGFINAELQRINKDPLDPSR 122 + ++P + + +F E A +AHNA FD F L I+K L Sbjct: 123 AVSRLEQPWQAGLL-----YFQELVASADVIVAHNAAFDRAWFGRGPLPAIDKPWLC--- 174 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +D L + + + L YGI + + H AL D L+ V+ Sbjct: 175 SMDDLRWPSERRLKATPSVRDLALAYGIPVW--AAHRALTDCIYLAQVF 221 >gi|156392522|ref|XP_001636097.1| predicted protein [Nematostella vectensis] gi|156223197|gb|EDO44034.1| predicted protein [Nematostella vectensis] Length = 461 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 35/196 (17%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD ETTGLD+ ND II++ + ++ P GR EA HGI++ F Sbjct: 157 VMFDTETTGLDTSNDVIIQLACAS----ENGDPLHSRYMFPGGRSIGSEATNAHGISEAF 212 Query: 70 -------LKDKPSFSSIFS------EFWDFFNEQNAE------WIAHNA-KFDVGFINAE 109 LKD + + S EF F ++ +AH FD + Sbjct: 213 IDGSRVLLKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFRLLINC 272 Query: 110 LQR---INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS--------KH 158 L+R +N+ S ++D++ + R ++ +S K+ ++ H H Sbjct: 273 LKRHNLMNEFISTGSVLLDSVKVVRASKKQEKSPFDSSFKKESLSALHGHLFGVPIDRPH 332 Query: 159 GALLDSHLLSDVYIKM 174 A D+ LS V +K+ Sbjct: 333 DAQADACALSKVLMKI 348 >gi|124002773|ref|ZP_01687625.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134] gi|123992001|gb|EAY31388.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134] Length = 270 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 8/131 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 + FD+ETTG + DRI+E ++ L + + + N P E+ +HGI DE Sbjct: 12 VFFDLETTGTNIAKDRIVEWAFIKALPNGEIEKDVKKI---NPEMPIPIESSLVHGIYDE 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-PLDPSRIIDT 126 +KD P+F SI F + + +N +FDV + E R+ D ++ +++D Sbjct: 69 HVKDAPTFKSIAKNLVKFL--EGCDLAGYNIVRFDVPVLVEEFLRVGVDFSVNNRKLVDA 126 Query: 127 LSIARRKHPSS 137 I P + Sbjct: 127 QKIFFMMEPRT 137 >gi|325963798|ref|YP_004241704.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease [Arthrobacter phenanthrenivorans Sphe3] gi|323469885|gb|ADX73570.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Arthrobacter phenanthrenivorans Sphe3] Length = 334 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI E + KP F +F E F + AHNA FD+G I + L+ ++ P Sbjct: 53 VRIHGIRPEHVAGKPRFGELFPEIGAFIGDDI--LAAHNAAFDLGVIRSGLE-VSGLPGP 109 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + T+ ++RR + N L + G+ + + H A D+ + + I + Sbjct: 110 AYDYVCTVMLSRRCYSLVSNSLPFAAEEAGVPLV--NHHDAAEDARACAGILIDI 162 >gi|33867257|ref|NP_898815.1| putative exonuclease X [Rhodococcus erythropolis] gi|33669091|gb|AAP74085.1| putative exonuclease X [Rhodococcus erythropolis] Length = 201 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 34/192 (17%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ET+GL+ IIE V ++D + + + P+A +H IT Sbjct: 30 ACILDVETSGLEGS---IIE---VAVIDAASGAVLLDTLVDCGPVQIEPDAHAVHSITAA 83 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT-- 126 L D P + +F++ + + +A+NA+FD G + L ++ +DP + + Sbjct: 84 DLDDAPRWPEVFAQLAAITSGRQV--LAYNAQFDQGRV---LHDCHRSGIDPGHLAEAGR 138 Query: 127 --LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-----YIKMMVGGS 179 +ARR C G+ R + G L+DV ++++ G Sbjct: 139 WQCVMARR------------CAALGLGAEGRVRLGG--GHRALADVRATRALVQLLAAGL 184 Query: 180 QINFGFKTNEDR 191 G EDR Sbjct: 185 PDAAGLAALEDR 196 >gi|226364575|ref|YP_002782357.1| DNA polymerase III subunit epsilon [Rhodococcus opacus B4] gi|226243064|dbj|BAH53412.1| putative exonuclease [Rhodococcus opacus B4] Length = 247 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 17/153 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV---FLCPNGRKNSPEALKLHGIT 66 FD+ETTG D + RI+ + + +RT+ + P G A +HGI+ Sbjct: 10 CAFDLETTGPDPTDARIVSACIAVVDAHHFESRTWLLDPEVPIPQG------ASDVHGIS 63 Query: 67 DEFLKD-----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 E+ + + I +D + +A +A NA +D+ ++ E R+ L Sbjct: 64 TEYARAHGQDYATGYREIRDALYDAWTRDHAV-VAFNASYDLTVMHTEGLRLGLPELVHG 122 Query: 122 RIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 ++D I R ++ R L ++C+ YGI + Sbjct: 123 IVVDPYVIDREMDRYRKGRRTLGAVCEHYGIAL 155 >gi|311745409|ref|ZP_07719194.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1] gi|126577956|gb|EAZ82176.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1] Length = 223 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 18/167 (10%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +++ +V D ETTGL+ D I+ GAV++ D T + + +K+ + + +HG Sbjct: 35 DQLSFVVLDTETTGLNPSVDHILSFGAVKIEDQMIQISTGVEWYLKSSKKDF-KTIPVHG 93 Query: 65 -ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I +E F+ E++ +N + H+ FD+ + L+ D + ++ Sbjct: 94 LIGNEEAVPLEQFAKRVLEYF-----ENNILVGHHLGFDLEMLEKALKPFGLDKIQ-NKC 147 Query: 124 IDTLSIA-RRKHP--SSRN-------DLNSLCKRYGITISHRSKHGA 160 IDT+S+A R H + RN L+SLC+RY I R G Sbjct: 148 IDTMSLAIRLDHGLMADRNYIDFKDYSLDSLCQRYDIKTDDRHTAGG 194 >gi|229014710|ref|ZP_04171818.1| exonuclease [Bacillus mycoides DSM 2048] gi|228746575|gb|EEL96470.1| exonuclease [Bacillus mycoides DSM 2048] Length = 181 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 10/98 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 ++ D ETTGL + D+II+I + L N + + N P EA +HGIT+E Sbjct: 26 VILDTETTGLTLR-DQIIDISVINLSGKILLNSLVKPTI------NIPAEAASIHGITNE 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 + PS+++I+ E + + +NA+FD+G I Sbjct: 79 MVHGAPSWTAIYKELREV--TVGKTLLIYNAEFDLGMI 114 >gi|190895636|ref|YP_001985928.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 652] gi|190699581|gb|ACE93665.1| probable polymerase protein, epsilon subunit [Rhizobium etli CIAT 652] Length = 326 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 49/107 (45%), Gaps = 16/107 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ ++D IIEIGAV D ++ L R PE +L GI Sbjct: 75 VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGSIGDIVGIYGGLQQPSRPIPPEVTRLTGI 134 Query: 66 TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 TD ++ D S S + E D IAHNA FD F A Sbjct: 135 TDAMVEGQVIDIRSLSDLI-EPADLI-------IAHNAGFDRPFCEA 173 >gi|330799210|ref|XP_003287640.1| hypothetical protein DICPUDRAFT_151766 [Dictyostelium purpureum] gi|325082367|gb|EGC35851.1| hypothetical protein DICPUDRAFT_151766 [Dictyostelium purpureum] Length = 557 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 13/152 (8%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D ETTGL D I EI ++L D S F + P +S A +HG T++ L Sbjct: 286 DTETTGLSVATDEITEISIIDLYDGSH----FYKLINPTTTVSSASA-SIHGHTNKSLAG 340 Query: 73 KPSFSSI---FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR--INKDPLDPSRI-IDT 126 + I E+ + + A IAHN KFD G + +++ + + + PS + +D+ Sbjct: 341 NEYWCDIEPSLIEYLSKYQKSGAYIIAHNEKFDRGILASQIGKNAASVPSMFPSIVFVDS 400 Query: 127 LSIARR--KHPSSRNDLNSLCKRYGITISHRS 156 + I +R K ++SL Y I S +S Sbjct: 401 IPIFKRFVKKLEGGYSMSSLIDHYQIPKSDKS 432 >gi|86144205|ref|ZP_01062541.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Leeuwenhoekiella blandensis MED217] gi|85829335|gb|EAQ47801.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Leeuwenhoekiella blandensis MED217] Length = 458 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 9/154 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTG + + E+ A+ D K F + P R + L GI + L Sbjct: 4 ILDLETTGGKYNEEGVTEV-AIYKFDGHKVVDQFISLVNPE-RPIQAFVVGLTGINNAML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P F + + Q+ +AHNA+FD + E R+ D S + T+ +A Sbjct: 62 RNAPKFYEVAKRIIEI--TQDCIIVAHNAQFDYRILQLEFDRLGYDYQRKS--LCTVELA 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGAL 161 + P + L L + GI I+ HR+ AL Sbjct: 118 QELLPGQESYSLGKLVRNLGIPITDRHRANGDAL 151 >gi|218709246|ref|YP_002416867.1| putative exonuclease [Vibrio splendidus LGP32] gi|218322265|emb|CAV18390.1| putative exonuclease [Vibrio splendidus LGP32] Length = 238 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 15/186 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGLDS+ D I+ +G V+++ + + N + + E ++ IT + Sbjct: 52 IVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLDNDSQINAETAVINHITPQM 111 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ +SI FF + I AH + FI+ L R P +DTL Sbjct: 112 LEEG---ASIHDAMLTFFEAAKGKIIVAHACVVEEKFISQYLLRCYGLRAIPLLWLDTLC 168 Query: 129 IARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGS 179 I + + N L +RYG + + H AL D+ +++++ K +V Sbjct: 169 IEKSMEKAISNHEEVDLTLAGTRERYG--LPEYNSHNALADAVSTAELFLAQQKRVVPND 226 Query: 180 QINFGF 185 ++ F Sbjct: 227 EVTLSF 232 >gi|302519905|ref|ZP_07272247.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] gi|302428800|gb|EFL00616.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] Length = 270 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 20/192 (10%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + + R FD+ET+G+D + DRI+ A L + L P G + A Sbjct: 1 MTQWHLGRLCAFDLETSGVDVEADRIVTAAAYG-LGGGEPVEPHDWMLDP-GVEIPAGAT 58 Query: 61 KLHGI-TDEF-LKDKPSFSSI--FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----- 111 +HGI TDE K +P+ I S+ + + HN +D ++ E + Sbjct: 59 AVHGITTDEARAKGEPAPGGIDHISDVLAEYARAGVAVVGHNVPYDFTLLDRECRRYELP 118 Query: 112 ----RINKDPLD--PSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALL 162 R+ + PL +R++D + R+ PS L +L + Y + HGA Sbjct: 119 TLHDRLGETPLYVIDTRVLDQHADPYRRRPSKDQGARQLVTLAQVYELPWDDEGAHGAAY 178 Query: 163 DSHLLSDVYIKM 174 D+ L + V ++ Sbjct: 179 DAVLAARVAYRI 190 >gi|300934269|ref|ZP_07149525.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM 45100] Length = 225 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 18/178 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + D+ETTGLDS+ DR++ IG + + +D S + + E+ +HG+ Sbjct: 44 LAVDVETTGLDSRKDRLLSIGWIPVDGHEIDLSGAGYG---VIEQETHETVGESATIHGL 100 Query: 66 TDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 TD+ + ++ + + + + + H K + FI+ Q L ++ + Sbjct: 101 TDDHVHREGEAAPEVLARLLQAL--RGRAMLVHYKKVESTFISDACQDHFGTGLK-AQYV 157 Query: 125 DTLSIARR------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 DTL +ARR HP +DL R + + H AL D+ ++VY+ ++ Sbjct: 158 DTLELARRFIEDGGGHPKG-DDLRLARIRERLELPSYHNHNALTDALACAEVYLALIA 214 >gi|259508093|ref|ZP_05750993.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] gi|259164316|gb|EEW48870.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] Length = 385 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 5/107 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + I+++G+ R+I A+ L ++ TF L P + P LHG+TDE Sbjct: 57 VAVTIQSSGIHPSTSRMITFTAITLTADNEPVETFHAVLNPG---SDPGPFHLHGVTDEE 113 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 + FS I + + I HNA GFI +E +R D Sbjct: 114 FRSARRFSQILKAVDRLIDGRT--LILHNAPRTWGFIVSEAKRAMND 158 >gi|292669904|ref|ZP_06603330.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648701|gb|EFF66673.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 219 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 8/85 (9%) Query: 7 MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M+ IV D+E + + N IIEIGAV L + + FQ ++CP Sbjct: 1 MKHIVVDLEMNPVSKEYREVRRKLNGEIIEIGAVRLNENYEQEDEFQCYVCPEYGMVKKH 60 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEF 83 +L GIT E ++ P+FS F F Sbjct: 61 ITELTGITQEKVEGHPAFSDSFHSF 85 >gi|332882730|ref|ZP_08450341.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679232|gb|EGJ52218.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 442 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 9/154 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI A+ D + F + P R KL GI ++ L Sbjct: 4 ILDIETTGGKYDEEGITEI-AIYRFDGHELTDQFISLINPE-RPIQDFVTKLTGINNKML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P F + + Q+ + HNA FD + E +R+ D + + + T+ ++ Sbjct: 62 RNAPKFYEVAKRIVEI--TQDTIIVGHNAAFDYRILQTEFRRLGYDYIRTT--LCTVELS 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGAL 161 ++ P + L L + GI +S HR+ AL Sbjct: 118 QQLLPEKESYSLGKLVRSLGIPMSERHRASGDAL 151 >gi|328469916|gb|EGF40827.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 10329] Length = 236 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 12/166 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTG+D++ D+I+ IG V+L LD + + ++C +G+ PE +++G+T + Sbjct: 53 VALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYIC-HGQFIKPETAQINGLTPQ 111 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + +AH + FI+A + P+ +DTL Sbjct: 112 DLAKGLPLDEGMNRLLERITGKVV--LAHGCCIEKAFIHAYFSSRYQVEDFPAYFVDTLQ 169 Query: 129 I------ARRKHPSSRNDLNSLCKRYGIT--ISHRSKHGALLDSHL 166 I A + S L+ L + Y + +SH + AL + L Sbjct: 170 IEKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAEL 215 >gi|260887789|ref|ZP_05899052.1| exonuclease [Selenomonas sputigena ATCC 35185] gi|260862465|gb|EEX76965.1| exonuclease [Selenomonas sputigena ATCC 35185] Length = 202 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 14/169 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + + VE+ D + + + P G + + +HGI+ Sbjct: 18 MNYIAIDFETA--TGSMNSACSVATVEVRD-GQLKEGWTTLIQPPGLRFDSFNIGIHGIS 74 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + D P+F+ E W+ E+ A +AHNA FD+G + A L N+ R Sbjct: 75 PKDVTDAPTFA----EVWEELKERLAGKIVVAHNASFDMGVLKASLLA-NRLQAPYFRTC 129 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 T+ IAR+ P+ + LN++ I H H AL D+ + + + Sbjct: 130 CTVRIARKVWPALDDHKLNTVGAHLNINFRH---HRALDDARTCAAILL 175 >gi|300024532|ref|YP_003757143.1| exonuclease RNase T and DNA polymerase III [Hyphomicrobium denitrificans ATCC 51888] gi|299526353|gb|ADJ24822.1| Exonuclease RNase T and DNA polymerase III [Hyphomicrobium denitrificans ATCC 51888] Length = 225 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 15/180 (8%) Query: 5 NKMRKIVF-DIETTGL------DSKNDRIIEIG----AVELLDYSKTNRTFQVFLCPNGR 53 +++I+F D ETTGL +DR+I IG L F F+ + Sbjct: 19 GSLQRILFVDTETTGLRRPSAASEDHDRVISIGFFDTDASALQAGFCRGKFGYFIFNPQQ 78 Query: 54 KNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 ++ A ++HG +D L + +F+S + F + ++HN FD F+ +E Sbjct: 79 ASAAGARRVHGYSDRILAQQDTFASCADMLFPAFGSADL-IVSHNTDFDRPFVESEFAGA 137 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + S A R L++ R GI +HGAL D+ L +Y+ Sbjct: 138 GRSLRGKS--WHCTMQAERARGGGSASLDASIDRLGIQ-RQSGRHGALEDAWLAMMLYLA 194 >gi|319948216|ref|ZP_08022374.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4] gi|319438119|gb|EFV93081.1| DNA polymerase III subunit epsilon [Dietzia cinnamea P4] Length = 240 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 12/135 (8%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNS----PEA 59 +++R + D+ETTGLD + DR++ +G V + D + L +GR ++ Sbjct: 41 DEVRLLAVDVETTGLDPRRDRVVSVGFVPVDGDRIVLRGAGSMVLRSDGRSGDDGGVGQS 100 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDP 117 +HG+TD+ + + + + +AH + +V F+ +R+ + P Sbjct: 101 ATVHGLTDDDVAHGSGVAEVLDRVLTALTGRV--LLAHYSTIEVDFLGVLCRRVYGVRPP 158 Query: 118 LDPSRIIDTLSIARR 132 L+ +DTL + RR Sbjct: 159 LE---AVDTLELQRR 170 >gi|115375897|ref|ZP_01463146.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca DW4/3-1] gi|310819816|ref|YP_003952174.1| exonuclease [Stigmatella aurantiaca DW4/3-1] gi|115367075|gb|EAU66061.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca DW4/3-1] gi|309392888|gb|ADO70347.1| Exonuclease [Stigmatella aurantiaca DW4/3-1] Length = 219 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 17/179 (9%) Query: 8 RKIVF-DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS-PEALKLHG 64 R + F D+ETTGLD+ ++E+ + + S K ++ + P ++ PEAL + G Sbjct: 29 RTLAFIDLETTGLDASRHEVLEVAILRVDARSLKVLAEYEARVQPTRLADAHPEALAVCG 88 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--- 121 +DE +D + + HN FD GF+ E R + PL PS Sbjct: 89 YSDEEWRDALPLREVLATVTPLLAGTLVA--GHNTSFDWGFL-VEGYRSTELPL-PSVDY 144 Query: 122 RIIDTLSIARRKHPSSRND---LNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKMMV 176 +DT S+A + + LN+L K +G+ HR + H A+ D+ +V ++ V Sbjct: 145 HRLDTASLAWPLLATGEVESLSLNALAKHFGL---HRPTPHRAMADARCALEVARRLAV 200 >gi|322373090|ref|ZP_08047626.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C150] gi|321278132|gb|EFX55201.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C150] Length = 828 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M KN + + D+E T S II++G V ++ + F + P+ +K + Sbjct: 1 MSEKNTNKYAIVDLEAT-FASSMASIIQVGIV-IMQNGQVIDEFASDVNPH-QKLDDHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I + +D ++ ++AHN KFD ++ L + P Sbjct: 58 HLTGITDQQLAQAPDFSEIARKIFDLI--EDCIFVAHNVKFDANLLSEALFMEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ +P+ + L+ L K + ++ H A+ D+ + +M Sbjct: 116 R--VDTVELAQVFYPTLEHYKLSHLSKVLNLDLAQ--AHTAIEDARATGQLLFHLM 167 >gi|307106672|gb|EFN54917.1| hypothetical protein CHLNCDRAFT_134628 [Chlorella variabilis] Length = 786 Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 11/128 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDE 68 + FD+ET+GL K I E GAV + TF ++C P G PEA K G+T E Sbjct: 30 VAFDLETSGL-GKKACITEFGAVG----AGGTATFHEYVCLPPGVVMDPEATKTTGLTAE 84 Query: 69 FLKD--KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIID 125 FL + +P F + F F +Q + ++H A D LQ + +D L P+ ++ Sbjct: 85 FLAENGRP-FEEAYPRFVSFLRQQRPD-VSHRAVEDCRSNLLVLQHLLRDLLQLPADAVE 142 Query: 126 TLSIARRK 133 + +R+ Sbjct: 143 AVEEVQRE 150 >gi|254525958|ref|ZP_05138010.1| exonuclease [Prochlorococcus marinus str. MIT 9202] gi|221537382|gb|EEE39835.1| exonuclease [Prochlorococcus marinus str. MIT 9202] Length = 259 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 25/177 (14%) Query: 6 KMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLH 63 K+ KI + D ETTGLD D +IEIG + L D S QV FL P N+ EA ++ Sbjct: 34 KIEKILILDTETTGLDENKDEVIEIGCI-LFDVSFKCVLSQVSFLFP---VNNNEAEHVN 89 Query: 64 GITDEF------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKD 116 GI+ + +D +F ++ DF +AHN +FD F L ++NK Sbjct: 90 GISADVTNISQPWEDGLNFFLKLVDYSDFI-------VAHNVEFDKKWFGKGRLPKLNKK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + ++ ++ + +K SR + L + I + + H AL D +S+V+ K Sbjct: 143 WICS---LEDINWSFQKSLKSRPSVTDLALSFSIPVWNL--HRALSDCFYISEVFKK 194 >gi|322419698|ref|YP_004198921.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18] gi|320126085|gb|ADW13645.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18] Length = 314 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 11/114 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPEALKLH 63 I D ETTGL+ K D++IE+G V + + + + F P G PE ++ Sbjct: 57 ICLDTETTGLNHKEDKVIELGIVAFEFDPLSGEIYRISDRYSGFEDP-GFPIPPEVREIT 115 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 GI+DE ++ + +F F D + IAHNA FD F+ K P Sbjct: 116 GISDEMVRGQ-AFDDAFV---DLLAGKADLVIAHNAAFDRKFVETRFPAFKKLP 165 >gi|325858421|ref|ZP_08172583.1| exonuclease [Prevotella denticola CRIS 18C-A] gi|325483059|gb|EGC86047.1| exonuclease [Prevotella denticola CRIS 18C-A] Length = 178 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 10/164 (6%) Query: 5 NKMRKIVFDIETTGLDSKN---DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 N +++I+ + ++ N + +G V ++ + TF + P + Sbjct: 10 NALQEIMQNFAAIDFETANFERSSVCSVGVV-IVRGGEVADTFYSLVHPEPNYYQWRCTQ 68 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG+T E P FS +++ + +AHNA FD G + A Q D D Sbjct: 69 VHGLTREDTDGAPVFSKVWARIEPLI--EGLPLVAHNAPFDKGCLRACFQTYRMDYPD-Y 125 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 +DTL ARR P S + L+++ G +S H AL D+ Sbjct: 126 EFLDTLRAARRVFPHLSNHQLHTVSAACGYDLS--RHHHALADA 167 >gi|330838686|ref|YP_004413266.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena ATCC 35185] gi|329746450|gb|AEB99806.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena ATCC 35185] Length = 186 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 14/169 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + + VE+ D + + + P G + + +HGI+ Sbjct: 2 MNYIAIDFETA--TGSMNSACSVATVEVRD-GQLKEGWTTLIQPPGLRFDSFNIGIHGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + D P+F+ E W+ E+ A +AHNA FD+G + A L N+ R Sbjct: 59 PKDVTDAPTFA----EVWEELKERLAGKIVVAHNASFDMGVLKASLLA-NRLQAPYFRTC 113 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 T+ IAR+ P+ + LN++ I H H AL D+ + + + Sbjct: 114 CTVRIARKVWPALDDHKLNTVGAHLNINFRH---HRALDDARTCAAILL 159 >gi|225868805|ref|YP_002744753.1| ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] gi|225702081|emb|CAW99711.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] Length = 821 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 83/176 (47%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI + + V D+E T II++G V +++ + ++Q + P+ S Sbjct: 1 MINEFSQKYAVIDLEATS-PGPTASIIQVGIV-IIEGKEIVDSYQTDVNPH-EPLSDHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS + ++ ++ ++AHN FD + L D L P Sbjct: 58 ALTGITDQQLAQAPDFSQVARTIFELI--EDCVFVAHNVTFDANLLAEALFLEGYDLLTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ +P + L+ L + + +S H A+ D+ ++++IK++ Sbjct: 116 R--VDTVELAQIFYPCLEKYSLSHLSEVLDLNLS--DAHTAIADAQATANLFIKLL 167 >gi|116255734|ref|YP_771567.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. viciae 3841] gi|115260382|emb|CAK03486.1| putative exonuclease/polymerase [Rhizobium leguminosarum bv. viciae 3841] Length = 326 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 49/107 (45%), Gaps = 16/107 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGL+ +ND IIEIGAV D ++ L R PE +L GI Sbjct: 75 VILDTETTGLNHRNDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPPEITRLTGI 134 Query: 66 TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 TD ++ D S ++ E D IAHNA FD F A Sbjct: 135 TDAMVEGQLIDIQSLRTLI-EPADLI-------IAHNAGFDRPFCEA 173 >gi|221069684|ref|ZP_03545789.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1] gi|220714707|gb|EED70075.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1] Length = 213 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 7/128 (5%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ ++ R E+ A+ LL+ + FQ + G SP +L GIT+ Sbjct: 7 VIDFETTGMTPAQGARATEV-AIVLLEQGRVVDRFQSLM-QAGAWVSPFITELTGITNAM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P + + + F A +AHNA FD F AEL + P T+ + Sbjct: 65 LRTAPPAAEVMRDAARFVG--GAPMVAHNASFDSKFWQAELALAGEA--APQLFACTVLL 120 Query: 130 ARRKHPSS 137 +RR +P + Sbjct: 121 SRRIYPQA 128 >gi|120553208|ref|YP_957559.1| DNA polymerase III subunit epsilon [Marinobacter aquaeolei VT8] gi|120323057|gb|ABM17372.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei VT8] Length = 240 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 25/172 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL++ I+ IG V L + + + + P + ++ +HGIT Sbjct: 51 VALDFETTGLEADQHSIVSIGLVPFTLTGIQLGQCWHQVVRPRLPLHK-TSVTIHGITHS 109 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127 +++ P + ++ N + + H + F+N LQ R+N+ P +IDT+ Sbjct: 110 EIENAPDLEDVLDPLFEHLNGRIP--VVHYRNIERPFLNTALQWRLNEQLRFP--VIDTM 165 Query: 128 SIARRKHPSSRND---------------LNSLCKRYGITISHRSKHGALLDS 164 +I HP +RN L RYG + H + H AL+D+ Sbjct: 166 AIEAHLHP-NRNPSRWQQLMGKKPISIRLADSRLRYG--LPHYASHNALIDA 214 >gi|264676215|ref|YP_003276121.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2] gi|262206727|gb|ACY30825.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2] Length = 214 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 7/128 (5%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ ++ R E+ A+ LL+ + FQ + G SP +L GIT+ Sbjct: 8 VIDFETTGMTPAQGARATEV-AIVLLEQGRVVDRFQSLM-QTGAWVSPFITELTGITNAM 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P + + + F A +AHNA FD F AEL + P T+ + Sbjct: 66 LRTAPPAAEVMRDAARFVGA--APMVAHNASFDSKFWQAELALAGEA--APQLFACTVLL 121 Query: 130 ARRKHPSS 137 +RR +P + Sbjct: 122 SRRIYPQA 129 >gi|146096896|ref|XP_001467969.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania infantum JPCM5] gi|134072335|emb|CAM71041.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania infantum JPCM5] Length = 188 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 35/179 (19%) Query: 29 IGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87 GA+E L +++ R F ++ P+ R+ S A +HGIT E ++ ++ SE + Sbjct: 2 CGAIEGL-WTRGGRVFHRYVRPSDPRRISAAAAAVHGITWETVQHCSPWTVAASELVAYM 60 Query: 88 NEQNAE------------------------WIAHNAKFDVGFINAELQRINKD----PLD 119 A+ +AHNA FD F+ L+R P Sbjct: 61 TLVGADAPVSASAQLEAAQLGGDRAVRLPPLVAHNASFDARFLEHHLRRCGYQIFWHPQY 120 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH---RSKHGALLDSHLLSDVYIKMM 175 P + T A+ +P N+L++LC I + + HGAL D+ L + ++++M Sbjct: 121 P--LTCTRQWAQVAYPHLANNLDALCAFLSIDGAADRVANGHGALTDATLTALLFLQMC 177 >gi|327194608|gb|EGE61458.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli CNPAF512] Length = 224 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 7/154 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 IR ++ I D ET + + +G + +D + R + + P + S + Sbjct: 24 IRYAALKTIAIDFETA--NEQRGSACSVG-LAWIDEGRVTRVEERLIRPRDMRFSGMNIA 80 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI E ++D P F + EF + + A IAHNA FD A L + + Sbjct: 81 IHGIRPEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLD-LYRQSYPEL 137 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISH 154 + +L +A+R P + LN + + G+ H Sbjct: 138 TYLCSLKMAQRIWPHFLSHRLNLIAEHLGLRFMH 171 >gi|256851438|ref|ZP_05556827.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN] gi|260660859|ref|ZP_05861774.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN] gi|282933112|ref|ZP_06338499.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1] gi|297206253|ref|ZP_06923648.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus jensenii JV-V16] gi|256616500|gb|EEU21688.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN] gi|260548581|gb|EEX24556.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN] gi|281302616|gb|EFA94831.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1] gi|297149379|gb|EFH29677.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus jensenii JV-V16] Length = 177 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 7/116 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++H IT + +KD P+ + ++ + + + AHNA+FD + L R + D + Sbjct: 50 IQVHQITPDDVKDAPTMAEVWPKIKALY-QPGMLVAAHNARFDANVLKMSLARYDID--E 106 Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P +IDTL +R P N LN++ + + + H H AL DS + + IK Sbjct: 107 PHYLVIDTLKTSRLFEPDLPNHKLNTVAEALDVELWHH--HNALSDSEACAGILIK 160 >gi|213964476|ref|ZP_03392676.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum SK46] gi|213952669|gb|EEB64051.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum SK46] Length = 195 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 12/150 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIG--AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D+ETTGLD D+++ IG AVE D + + E+ +HG+TD Sbjct: 22 LAVDVETTGLDPSKDQLLSIGWVAVEGRDIVLEESGHLIIRPEREEVSVGESATVHGLTD 81 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + + + +AH A+ +VGF++ ++ D + DT+ Sbjct: 82 DMVATGVEAEVAVGKLLEALRGRKL--LAHYARMEVGFLDPLCRKYFDARFDVP-VADTM 138 Query: 128 -----SIARRKHPSSRNDLN--SLCKRYGI 150 +I R R++L SLC +YGI Sbjct: 139 TREYDAILRANREPVRDELRLWSLCDKYGI 168 >gi|239948068|ref|ZP_04699821.1| DNA polymerase III subunit epsilon [Rickettsia endosymbiont of Ixodes scapularis] gi|239922344|gb|EER22368.1| DNA polymerase III subunit epsilon [Rickettsia endosymbiont of Ixodes scapularis] Length = 251 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 15/165 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-----SPEALKLHG 64 + D ETTGL D+I+E+G V+ +Y+ R + + N ++ +P +L G Sbjct: 1 MFLDTETTGLSYVTDKILELGMVK-FEYTNDGRIYNILEEFNQYQDPKEPIAPHITELTG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITDE ++D+ +I E F + + IAHNA FD F + + +R Sbjct: 60 ITDEMVRDQ----NINKEEVINFLQNVSIIIAHNAGFDRPFFDKLFPDLTTKIWGCAR-- 113 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSHLLS 168 L I + L L +Y HR+ L HLLS Sbjct: 114 --LDIDWKYEKIESQKLEYLAYKYNFFYEGHRAVIDCLAGLHLLS 156 >gi|328951319|ref|YP_004368654.1| Exonuclease RNase T and DNA polymerase III [Marinithermus hydrothermalis DSM 14884] gi|328451643|gb|AEB12544.1| Exonuclease RNase T and DNA polymerase III [Marinithermus hydrothermalis DSM 14884] Length = 185 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 8/125 (6%) Query: 7 MRKIVF---DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSP-EALK 61 MR++V+ D+ET+GL+ + D+I+ +G V + + + F + P P LK Sbjct: 1 MRRVVYWALDVETSGLNPRRDQILAVGMVPVRGGAVRCREAFYSLVRPPSPAVVPLWGLK 60 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 H I L+ P + + E + + H+A DV F+ + + P Sbjct: 61 AHHIRPVELRGAPPLAEVLREV--DRRLRGGALLVHHAAVDVAFLRRAYRALGW-PWPAP 117 Query: 122 RIIDT 126 R++DT Sbjct: 118 RVVDT 122 >gi|288818861|ref|YP_003433209.1| exonuclease [Hydrogenobacter thermophilus TK-6] gi|288788261|dbj|BAI70008.1| exonuclease [Hydrogenobacter thermophilus TK-6] gi|308752448|gb|ADO45931.1| Exonuclease RNase T and DNA polymerase III [Hydrogenobacter thermophilus TK-6] Length = 216 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 10/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGLD K D I IGA+++ D +++F + P ++++HGIT Sbjct: 43 VVCDTETTGLDLKKDEPIAIGALKVKDLCIDLSQSFYRLIKPQTPPKR-SSIEVHGITPS 101 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + EF +F + + + + D+ + L+ P P +D L Sbjct: 102 DLDIAKEREEVSKEFLEF--SRGSLLVGYFFYIDLVMLKKLLKSFCSVPFVPYS-LDVLD 158 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + + S +++ SL + S H AL D+++ + V++K++ Sbjct: 159 LYKSEKHISLDEMLSL-----FDLPSSSHHSALEDAYMTALVFLKLI 200 >gi|228473001|ref|ZP_04057758.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC 33624] gi|228275583|gb|EEK14360.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC 33624] Length = 453 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 9/159 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI A+ D K F + P +K ++L GI+++ + Sbjct: 4 IIDIETTGGKMGEEAITEI-AIYRFDGQKVTDRFISLINPE-KKIDDFVVRLTGISNKTV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + + ++ +AHNA FD ++ E +R+ D + + T+ ++ Sbjct: 62 RQAPKFYEVAKRIVEI--TEDCILVAHNASFDYRVLSLEFRRLGFDYQRST--LCTVEMS 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITI--SHRSKHGALLDSHL 166 +R P + L L + GI + HR+ A+ HL Sbjct: 118 QRLLPDEPSYSLGKLTRSLGIPLLNRHRANGDAMATVHL 156 >gi|167999243|ref|XP_001752327.1| predicted protein [Physcomitrella patens subsp. patens] gi|162696722|gb|EDQ83060.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1960 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 103/238 (43%), Gaps = 42/238 (17%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68 IVFDIETTG +I+E+ ++ T + + P + P A +H IT E Sbjct: 252 IVFDIETTGFLKPGSKIVELACRDIA--GGDCSTLETLVNP--YQPVPIASTAVHKITSE 307 Query: 69 FLK--DKPSFSSIFSEFWDFFNEQ---NAEWI--AHNA-KFDVGFINAELQRINKDPLDP 120 + D PS++ + + F DF + N++ I AHN +FDV FI E + + Sbjct: 308 MVNRDDIPSWTEVMTAFVDFVESRRIGNSDVILVAHNGRRFDVPFIMKECYECSMEIPSH 367 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH---------------RSKHGALLDSH 165 IDT+ +A+ L KR+G T + H A +D Sbjct: 368 WYFIDTIDLAKAM----------LKKRFGKTKLYNLQFLYYDCYKLPRLEDAHRAGVDVD 417 Query: 166 LLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 +L+ V+ K+++ ++ D+ FK + LL+ + +T ++K E+DE Sbjct: 418 MLASVFGKLLM---ELEMPVSELLDQAFKASHIELKPDLLLRENNDRYTSLSK-EVDE 471 >gi|18466779|ref|NP_569586.1| hypothetical protein HCM2.0114c [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16506095|emb|CAD09981.1| hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] Length = 185 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 5/164 (3%) Query: 13 DIETTGLD-SKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 DIE+TGLD + +IIEI L+ K + ++ P R P+A +HGI+ E L Sbjct: 9 DIESTGLDFTSGHKIIEIAITRYELETQKHIDSLEMRFNPR-RSIDPKAQAVHGISLEDL 67 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSI 129 +P + + + +A +AHN + FD+ FI E D + L Sbjct: 68 ATEPLLADHAGKIAAYMGACSA-LVAHNGEAFDLPFIRHEFGSYGVKLPDIPLVDSMLDG 126 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R L L G T H AL D+ L+ + K Sbjct: 127 LWATEDGKRPRLEELAFSLGFTYDREKAHSALYDTDLMMQCFFK 170 >gi|298708153|emb|CBJ30494.1| ATP-dependent DNA helicase RecG [Ectocarpus siliculosus] Length = 1002 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 15/109 (13%) Query: 18 GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPS-- 75 GL +K DR+I++ A ++L +F F+ P P ++ GIT E L + Sbjct: 755 GLRAKEDRVIQLAA-KVLGSENPRHSFAEFVDPGAVGVPPRVREITGITPEILAANGARP 813 Query: 76 FSSIFSEFWDFFN----EQNAE--------WIAHNAKFDVGFINAELQR 112 F ++ EF + + E+ AE ++AHNA+FD F+ E+ R Sbjct: 814 FPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEEVSR 862 >gi|307565507|ref|ZP_07627990.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii CRIS 21A-A] gi|307345787|gb|EFN91141.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii CRIS 21A-A] Length = 183 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 12/184 (6%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N + I D ET +K I E G + ++ K T + P + S +++HG Sbjct: 2 NNINFIAIDFETA--TAKRSSICEAG-ICVVKGGKVVETKSWLVRPEDNRYSYWNIQIHG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + P+F ++ E + + +AHNA FD+ I LQ ++ P Sbjct: 59 IRPQDTAYAPTFPKVWEEITTYLRDCPV-LVAHNAAFDMSCIRHTLQ-LHHLPCPDIDYY 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG-----S 179 +L AR + N L+ LC + +IS+ + H A D+ + + ++++ + G S Sbjct: 117 CSLRAARHIYDFGCNTLDYLCDHF--SISYGTHHRAGDDAEMCARLFLQEIKDGNFADVS 174 Query: 180 QINF 183 +NF Sbjct: 175 DLNF 178 >gi|255656369|ref|ZP_05401778.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-23m63] gi|296450182|ref|ZP_06891943.1| epsilon subunit family exonuclease [Clostridium difficile NAP08] gi|296878563|ref|ZP_06902568.1| epsilon subunit family exonuclease [Clostridium difficile NAP07] gi|296260945|gb|EFH07779.1| epsilon subunit family exonuclease [Clostridium difficile NAP08] gi|296430370|gb|EFH16212.1| epsilon subunit family exonuclease [Clostridium difficile NAP07] Length = 168 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 5/159 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGLD I + + + + + + P G +S +L I++E Sbjct: 5 VVVDLETTGLDPYKGCEIIEIGITEIKNEQIVKNYSRLIKPKGIISSF-ITELTHISNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++++ + F + ++ IAHNAKFD+ F+N L+ +N +P++ L Sbjct: 64 VENEEPLELVLPRFRKYIGDRTI--IAHNAKFDLKFLNYYLRMLNLEPINNYICTVELLK 121 Query: 130 ARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHL 166 + + L + C Y I +HR+ L + L Sbjct: 122 KCKSYKGKNKKLETACAYYNIENINAHRADSDTLATAKL 160 >gi|299531122|ref|ZP_07044534.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44] gi|298720825|gb|EFI61770.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44] Length = 213 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 7/128 (5%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D ETTG+ ++ R E+ A+ LL+ + FQ + G SP +L GIT+ Sbjct: 7 VIDFETTGMTPAQGARATEV-AIVLLEQGRVVDRFQSLM-QTGAWVSPFITELTGITNAM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P + + + F A +AHNA FD F AEL + P T+ + Sbjct: 65 LRTAPPAAEVMRDAARFVGA--APMVAHNASFDSKFWQAELALAGEA--APQLFACTVLL 120 Query: 130 ARRKHPSS 137 +RR +P + Sbjct: 121 SRRIYPQA 128 >gi|261251373|ref|ZP_05943947.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] gi|260938246|gb|EEX94234.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] Length = 239 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 29/174 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF----QVFLCPNGRKNSPEALKLHGI 65 + D ETTGLDS ND II IG V NR F Q + ++ + E++ +HGI Sbjct: 50 LAMDFETTGLDSDNDDIITIGTVPF----NLNRIFINQAQHWTVRPRKQLAEESVVIHGI 105 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + D P S I+ + + + + + H + + F + L K+ ++ ++D Sbjct: 106 THSDVLDAPDLSGIYEQVLEQMSGKIM--VVHYQRIEREFFDKALMARIKEGIE-FPVVD 162 Query: 126 TLSIARR---------------KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 T+ I + K P+S L + RYG + + H AL D+ Sbjct: 163 TMHIETQLQQKQSGGLFNKILGKKPASVR-LGASRSRYG--LPQYTPHHALTDA 213 >gi|84386996|ref|ZP_00990019.1| DNA polymerase III, epsilon chain [Vibrio splendidus 12B01] gi|84378071|gb|EAP94931.1| DNA polymerase III, epsilon chain [Vibrio splendidus 12B01] Length = 238 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 15/186 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGLDS+ D I+ +G V+++ + + N + + E ++ IT + Sbjct: 52 IVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLDNDSQINAETAVINHITPQM 111 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ +SI FF + I AH + FI+ L R P +DTL Sbjct: 112 LEEG---ASIHDAMLTFFEAAKGKIIVAHACMVEERFISQYLLRCYGLRAIPLLWLDTLC 168 Query: 129 IARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGS 179 I + + N L +RYG + + H AL D+ +++++ K +V Sbjct: 169 IEKSMEKAISNHEEVDLTLAGTRERYG--LPEYNNHNALADAVSTAELFLAQQKRVVPND 226 Query: 180 QINFGF 185 ++ F Sbjct: 227 EVTVAF 232 >gi|260767723|ref|ZP_05876658.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|260617232|gb|EEX42416.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] Length = 222 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 15/171 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIET+GLD+++D I+ IG V +++ + FL +N P+ + LH I + + Sbjct: 35 LDIETSGLDAEHDHIVSIGWVPIVNQVIRLAEARYFLITPSGQNDPQQVVLHHIMPQMQR 94 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI-- 129 + F + +AH + + FI+ +Q+ + P P +DTL I Sbjct: 95 QGIPLAQAIELL--FTQLKGKVLLAHGSVVERQFIHHFMQQ-HGWPDLPIVWLDTLKIEQ 151 Query: 130 -----ARRKHP-SSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 A P S+ ND L+++ KRY + H AL D+ +++Y+ Sbjct: 152 AYAQYAPYNMPHSNANDWRLSTVRKRYHLPA--YQAHHALSDAIATAELYL 200 >gi|255547337|ref|XP_002514726.1| exonuclease, putative [Ricinus communis] gi|223546330|gb|EEF47832.1| exonuclease, putative [Ricinus communis] Length = 448 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 11/154 (7%) Query: 12 FDIETT-GLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKN---SPEALKLHGIT 66 FD+ETT + + I+E GA+ + + T+ F+ P + S L+ +GIT Sbjct: 17 FDLETTLPGECEGFAILEFGAILVCPRTLVELHTYATFVQPAADPSLIFSSSFLRSNGIT 76 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125 + + P+FS I ++ N + W HN KFD I I + P P +ID Sbjct: 77 YDNIVSAPTFSDIADTVYEILNGR--LWAGHNVQKFDSVKIREAFAEIGRQPPVPKGVID 134 Query: 126 TLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156 T + K D+ SL +G+ +HRS Sbjct: 135 TWELLTHKFGRRAGDMKMASLATYFGLGKQTHRS 168 >gi|160689366|gb|ABX45541.1| polymerase C [Bacillus sonorensis] Length = 259 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GFIN +++ K + +IDTL + R +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFINVAYKKLLKSEKAQNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQINFGF 185 + D+ + +KM+ ++ N + Sbjct: 59 IYDTEATGYLLVKMLKDAAEKNILY 83 >gi|303233442|ref|ZP_07320110.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Atopobium vaginae PB189-T1-4] gi|302480450|gb|EFL43542.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Atopobium vaginae PB189-T1-4] Length = 539 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 16/175 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 + D ETTGL +D + +I AV+ T TF F+ P K P + KL I + Sbjct: 84 VFLDTETTGLSFADDSLTQIAAVKR-RADGTFDTFCTFVHPP--KPIPAHISKLTNIYNA 140 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F A +AHNA FD F+ LQ S ID+L+ Sbjct: 141 DVAAAPKPKEAVLALAQFVG--GAPIVAHNAAFDKTFVEGVLQHQTVS----STWIDSLA 194 Query: 129 IARRKHPS-SRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +++ PS + + L L +G ++HR+ D L+DV+ MM Q+ Sbjct: 195 LSKIAFPSFNTHKLEDLAVLFGCARVTHRADD----DCKALADVWHYMMRALCQL 245 >gi|328881184|emb|CCA54423.1| putative DNA polymerase III [Streptomyces venezuelae ATCC 10712] Length = 242 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 21/158 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG+D + DRI+ A+ + D +L G A +HG+TD+ L Sbjct: 12 AFDTETTGVDVEEDRIVS-AALVVQDTVGARPRVTRWLVNPGIPVPEGATAVHGLTDDHL 70 Query: 71 KDKPSF-SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR---------INKDP 117 + + + + E EQ A + NA FD+ ++ EL+R + P Sbjct: 71 QRYGRWPAPVMEELARALAEQIAAGRPLVVMNAPFDLTILDRELRRHRASTLGHYLASTP 130 Query: 118 ---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152 LDP R++D RK R L LC Y + + Sbjct: 131 LCVLDP-RVLDKHLDRYRK---GRRTLTDLCAHYEVEL 164 >gi|257895239|ref|ZP_05674892.1| exonuclease [Enterococcus faecium Com12] gi|257897861|ref|ZP_05677514.1| exonuclease [Enterococcus faecium Com15] gi|293377229|ref|ZP_06623434.1| exonuclease [Enterococcus faecium PC4.1] gi|257831804|gb|EEV58225.1| exonuclease [Enterococcus faecium Com12] gi|257835773|gb|EEV60847.1| exonuclease [Enterococcus faecium Com15] gi|292644090|gb|EFF62195.1| exonuclease [Enterococcus faecium PC4.1] Length = 177 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI E +++ P F ++ +F ++N +AHNA FD + L + + Sbjct: 50 VQIHGIHQEDVRNAPKFPEVWQTIQPYF-QKNLLVVAHNAAFDTKVLAGCLDYYHLE--Q 106 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P+ + + T+ +RR P N LN++C+ I + H H AL DS +++ + Sbjct: 107 PNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 159 >gi|332520671|ref|ZP_08397133.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4] gi|332044024|gb|EGI80219.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4] Length = 444 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 14/158 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGI 65 M + D+ET+G + +RI EI + + +K F + PN PE + L GI Sbjct: 1 MFYTIIDVETSG---RTNRITEISIFKYHE-NKIIDEFTSLVNPNCY--IPEHITALTGI 54 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + + P FS I ++ + ++ ++AHN FD I E +R+ D + + Sbjct: 55 DNNTVANAPEFSEIANKVLEI--TKDCIFVAHNVNFDYNVIRKEFKRLEID--FTRKKLC 110 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGA 160 T+ ++R+ P R+ L LCK I I+ HR++ A Sbjct: 111 TVRLSRKLLPGHRSYSLGKLCKDLNICINGRHRARGDA 148 >gi|325568813|ref|ZP_08145106.1| exonuclease [Enterococcus casseliflavus ATCC 12755] gi|325157851|gb|EGC70007.1| exonuclease [Enterococcus casseliflavus ATCC 12755] Length = 177 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 7/116 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI E +++ P F ++ + ++ + N+ +AHNA FD G + L Sbjct: 50 IQIHGIRPEDVQEAPKFPDVWKQIQQYY-QLNSLIVAHNAGFDTGVLAGCLDYYGLS--Q 106 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P+ + + T+ +R+ +P N LN++C++ I + + H AL DS + + ++ Sbjct: 107 PNYLSLCTVRTSRKLYPEFTNHKLNTVCEQLQIPL--LNHHDALEDSRACAQILLR 160 >gi|314937698|ref|ZP_07845022.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a04] gi|314943353|ref|ZP_07850126.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133C] gi|314953543|ref|ZP_07856454.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133A] gi|314994073|ref|ZP_07859394.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133B] gi|314996850|ref|ZP_07861856.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a01] gi|313589017|gb|EFR67862.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a01] gi|313591508|gb|EFR70353.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133B] gi|313594422|gb|EFR73267.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133A] gi|313597934|gb|EFR76779.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133C] gi|313642944|gb|EFS07524.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a04] Length = 194 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI E +++ P F ++ +F ++N +AHNA FD + L + + Sbjct: 67 VQIHGIHQEDVRNAPKFPEVWQTIQPYF-QKNRLVVAHNAAFDTKVLAGCLDYYHLE--Q 123 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P+ + + T+ +RR P N LN++C+ I + H H AL DS +++ + Sbjct: 124 PNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 176 >gi|116629671|ref|YP_814843.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323] gi|238854243|ref|ZP_04644587.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 202-4] gi|116095253|gb|ABJ60405.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323] gi|238833054|gb|EEQ25347.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 202-4] Length = 937 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 11/153 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG ++ D II+ G ++ K +T+ + P+ + P+A++ L I++ Sbjct: 12 VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKTYSFLINPH--REIPQAVENLTHISNR 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + F+ + +N ++AHN FD+ F+N EL +PL + IDT+ Sbjct: 69 DVAQARDFNYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTVE 125 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160 +A+ P+ L L R + I H + H A Sbjct: 126 LAQIAFPTFPSYKLRDLTAR--LKIKHLNPHRA 156 >gi|167554101|ref|ZP_02347842.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321613|gb|EDZ09452.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 287 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 12/120 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD+ + +EIG V ++ R F+ L P + P A +HGI+DE Sbjct: 106 VFLDTETTGLDA-GAQALEIGLVN----ARGERIFETRLKPTVAID-PAAAAVHGISDED 159 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L PS+ I + + + NA+FD + N DP+ +D+L++ Sbjct: 160 LVRAPSWPDIAQQLQHHIGRRPL--VIFNAEFDTRILKQTAAAHN----DPASWLDSLTV 213 >gi|260577531|ref|ZP_05845471.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium ATCC 43734] gi|258604335|gb|EEW17572.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium ATCC 43734] Length = 214 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 23/152 (15%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG+D K RI+ V + R L G + +A +HGIT E+ + Sbjct: 4 FDLETTGVDPKTARIVTSALVTI---KGRERNDIEMLADPGVEIPQQASDVHGITTEYAR 60 Query: 72 DKPS-FSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID-- 125 + + ++ + A I +NA +D+ + A L+PS +D Sbjct: 61 EHGQDHGEVLAKTIEGIRAAWRSGATLIVYNAAYDLSVLRA---------LEPSFTVDGP 111 Query: 126 -----TLSIARRKHPSSRNDLNSLCKRYGITI 152 + A+ ++ + L S+C+ YG+T+ Sbjct: 112 VFDPYVVDRAKDQYRKGKRTLESVCQHYGVTL 143 >gi|42518811|ref|NP_964741.1| hypothetical protein LJ0886 [Lactobacillus johnsonii NCC 533] gi|41583097|gb|AAS08707.1| hypothetical protein LJ_0886 [Lactobacillus johnsonii NCC 533] Length = 177 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 5/115 (4%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +K+HGIT E +K+ P+ + ++ + + + AHNA+FD + L R N P Sbjct: 50 IKIHGITAEDVKNAPTMAEVWPKIKKLY-QPGMLVAAHNARFDCRVMEKSLARYNI-PAP 107 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 IDTL+ ++ P N L+++ + I + H H AL DS + + I+ Sbjct: 108 HYFAIDTLATSKAFEPYLPNHKLDTVSEALNINLWHH--HNALSDSEACAGILIE 160 >gi|311110686|ref|ZP_07712083.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri MV-22] gi|311065840|gb|EFQ46180.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri MV-22] Length = 937 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 11/153 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG ++ D II+ G ++ K +T+ + P+ + P+A++ L I++ Sbjct: 12 VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKTYSFLINPH--REIPQAVENLTHISNR 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + F+ + +N ++AHN FD+ F+N EL +PL + IDT+ Sbjct: 69 DVAQARDFNYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTVE 125 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160 +A+ P+ L L R + I H + H A Sbjct: 126 LAQIAFPTFPSYKLRDLTAR--LKIKHLNPHRA 156 >gi|227529584|ref|ZP_03959633.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC 49540] gi|227350483|gb|EEJ40774.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC 49540] Length = 178 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 9/126 (7%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI +E ++D P+F ++ F+ + IAHN FD + L P Sbjct: 50 VQIHGIHEEDVQDAPTFPEVWQHIKQFYRPEQLV-IAHNNSFDNSVLKNTLLHYGIQP-- 106 Query: 120 PS-RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMM 175 P+ + +DT+ +RR P N LN++C I + H H AL D+ +++ Y Sbjct: 107 PTFQTLDTVKSSRRLIPGLDNYRLNTVCDALQIDLHHH--HNALDDAQACANILLYEAQH 164 Query: 176 VGGSQI 181 G Q+ Sbjct: 165 FSGEQL 170 >gi|227550322|ref|ZP_03980371.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330] gi|227180544|gb|EEI61516.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330] Length = 201 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI E +++ P F ++ +F ++N +AHNA FD + L + + Sbjct: 74 VQIHGIHQEDVRNAPKFPEVWQTIQPYF-QKNLLVVAHNAAFDTKVLAGCLDYYHLE--Q 130 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P+ + + T+ +RR P N LN++C+ I + H H AL DS +++ + Sbjct: 131 PNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 183 >gi|149371249|ref|ZP_01890735.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49] gi|149355387|gb|EDM43946.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49] Length = 257 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 28/136 (20%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-----------PEAL 60 FD+ETTG++ DRI+EI +++ PNG K S P+ Sbjct: 12 FDLETTGINIAKDRIVEIAILKVF--------------PNGNKESFVWKVNPTIPIPKVT 57 Query: 61 K-LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PL 118 +HGITDE + ++P+F + + + + + N +FD+ + EL R D L Sbjct: 58 SDIHGITDEMVVNEPTFKELAPKVFALIKDSDLAGFNSN-RFDIPLLAEELLRAEIDYDL 116 Query: 119 DPSRIIDTLSIARRKH 134 + +D +I +K Sbjct: 117 KKAASVDVQTIFHKKE 132 >gi|255528639|ref|ZP_05395399.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|296185899|ref|ZP_06854305.1| exonuclease [Clostridium carboxidivorans P7] gi|255507668|gb|EET84148.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|296049567|gb|EFG88995.1| exonuclease [Clostridium carboxidivorans P7] Length = 196 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 9/132 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+KI D ETTGL+ + ++ + F + P A +HG + Sbjct: 1 MKKIFLDTETTGLEPGQIIQLTYCVCDINSRGEEKVCFAKNFFFDVDYVEPSAEAVHGFS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPS 121 E LK S+ EF D +E A+ +IAHN +FD F+ AE R+N +P+ Sbjct: 61 VERLKT----LSMGQEFKDAASEVAADLEGGIFIAHNVRFDQKFVTAEFDRLNSIHWNPA 116 Query: 122 RIIDTLSIARRK 133 + T+ + K Sbjct: 117 KFFCTMQYFKSK 128 >gi|257879256|ref|ZP_05658909.1| exonuclease [Enterococcus faecium 1,230,933] gi|257881926|ref|ZP_05661579.1| exonuclease [Enterococcus faecium 1,231,502] gi|257886420|ref|ZP_05666073.1| exonuclease [Enterococcus faecium 1,231,501] gi|257892035|ref|ZP_05671688.1| exonuclease [Enterococcus faecium 1,231,410] gi|257894890|ref|ZP_05674543.1| exonuclease [Enterococcus faecium 1,231,408] gi|258617178|ref|ZP_05714948.1| exonuclease [Enterococcus faecium DO] gi|260558702|ref|ZP_05830891.1| exonuclease [Enterococcus faecium C68] gi|261208809|ref|ZP_05923246.1| exonuclease [Enterococcus faecium TC 6] gi|289567393|ref|ZP_06447761.1| exonuclease [Enterococcus faecium D344SRF] gi|293554053|ref|ZP_06674651.1| exonuclease [Enterococcus faecium E1039] gi|293559453|ref|ZP_06675990.1| exonuclease [Enterococcus faecium E1162] gi|293567360|ref|ZP_06678710.1| exonuclease [Enterococcus faecium E1071] gi|293571424|ref|ZP_06682452.1| exonuclease [Enterococcus faecium E980] gi|294616820|ref|ZP_06696561.1| exonuclease [Enterococcus faecium E1636] gi|294620071|ref|ZP_06699426.1| exonuclease [Enterococcus faecium E1679] gi|294622945|ref|ZP_06701839.1| exonuclease [Enterococcus faecium U0317] gi|257813484|gb|EEV42242.1| exonuclease [Enterococcus faecium 1,230,933] gi|257817584|gb|EEV44912.1| exonuclease [Enterococcus faecium 1,231,502] gi|257822276|gb|EEV49406.1| exonuclease [Enterococcus faecium 1,231,501] gi|257828395|gb|EEV55021.1| exonuclease [Enterococcus faecium 1,231,410] gi|257831269|gb|EEV57876.1| exonuclease [Enterococcus faecium 1,231,408] gi|260075161|gb|EEW63474.1| exonuclease [Enterococcus faecium C68] gi|260077311|gb|EEW65031.1| exonuclease [Enterococcus faecium TC 6] gi|289160818|gb|EFD08750.1| exonuclease [Enterococcus faecium D344SRF] gi|291589962|gb|EFF21760.1| exonuclease [Enterococcus faecium E1071] gi|291590326|gb|EFF22094.1| exonuclease [Enterococcus faecium E1636] gi|291593687|gb|EFF25206.1| exonuclease [Enterococcus faecium E1679] gi|291597644|gb|EFF28801.1| exonuclease [Enterococcus faecium U0317] gi|291601744|gb|EFF31998.1| exonuclease [Enterococcus faecium E1039] gi|291606515|gb|EFF35912.1| exonuclease [Enterococcus faecium E1162] gi|291608496|gb|EFF37790.1| exonuclease [Enterococcus faecium E980] Length = 177 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI E +++ P F ++ +F ++N +AHNA FD + L + + Sbjct: 50 VQIHGIHQEDVRNAPKFPEVWQTIQPYF-QKNRLVVAHNAAFDTKVLAGCLDYYHLE--Q 106 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P+ + + T+ +RR P N LN++C+ I + H H AL DS +++ + Sbjct: 107 PNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 159 >gi|300361735|ref|ZP_07057912.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus gasseri JV-V03] gi|300354354|gb|EFJ70225.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus gasseri JV-V03] Length = 937 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 11/153 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG ++ D II+ G ++ K +T+ + P+ + P+A++ L I++ Sbjct: 12 VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKTYSFLINPH--REIPQAVENLTHISNR 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + F + +N ++AHN FD+ F+N EL +PL + IDT+ Sbjct: 69 DVAQARDFKYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTVE 125 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160 +A+ P+ L L R + I H + H A Sbjct: 126 LAQIAFPTFPSYKLRDLTAR--LKIKHLNPHRA 156 >gi|224372263|ref|YP_002606635.1| exonuclease [Nautilia profundicola AmH] gi|223589603|gb|ACM93339.1| exonuclease [Nautilia profundicola AmH] Length = 293 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 31/179 (17%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ ++ D ETTG + + DRII++ + L + + + P S EA+ +H IT Sbjct: 1 MKIVILDTETTG-NKEEDRIIQLSYLVLNENLEIEEIHDELVKP-PLPISFEAMAVHHIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDP-SR 122 +E ++DKP +E + E N+ + HNAKFD L + K+ + + Sbjct: 59 NEMVEDKPLIKH--TESYKRLKELNSPENLLVIHNAKFD-------LDMLKKEGFNSFFK 109 Query: 123 IIDTLSIARRKHPSSRNDLN-------------SLCKRYGITISHRSKHGALLDSHLLS 168 +IDT + + P + L +C++Y I I + H AL D +L Sbjct: 110 LIDTFRVLKHLIPEGKFSLQYNRYALGLYKKEKDICEKYNIQI---NAHDALGDVIVLG 165 >gi|319953942|ref|YP_004165209.1| exonuclease rnase t and DNA polymerase iii [Cellulophaga algicola DSM 14237] gi|319422602|gb|ADV49711.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga algicola DSM 14237] Length = 258 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/101 (23%), Positives = 55/101 (54%), Gaps = 3/101 (2%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG++ DR++EI +++ + N+ + +L E + +HGIT+E + Sbjct: 12 FDLETTGINVAKDRVVEIAILKI--HPNGNKESKTWLVNPEMVIPDEVIAVHGITNEKVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 ++P+F + + ++ + + ++ +FD+ + E+ R Sbjct: 70 NEPTFKELSKDIYNMIKDSDLGGF-NSDRFDIPLLAEEMLR 109 >gi|197261383|ref|YP_002154199.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage LBL3] gi|197244473|emb|CAR31208.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage LBL3] Length = 184 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 77/183 (42%), Gaps = 24/183 (13%) Query: 11 VFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 V+D ETTGL K RIIE V + D K + F+C G K+ Sbjct: 5 VWDTETTGLPFHQRVSLRKQPRIIEFAGV-ITDGEKILDEVE-FICNPGIVIEEIITKIT 62 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-------INKD 116 G+ +E L PSF + DFF +A IAHN FD + +L R +N Sbjct: 63 GLKNEDLIKHPSFLDQRQKVRDFFARADAN-IAHNLPFDKFMLTCDLARGKLGLEEVNFP 121 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 LD + ++ + R L L + Y + KH AL D LL++V +M V Sbjct: 122 SLDICTVEESAPLF-----GHRMRLQHLYEHY--CGPYVQKHRALDDVRLLNEVCKRMGV 174 Query: 177 GGS 179 G+ Sbjct: 175 YGA 177 >gi|120436992|ref|YP_862678.1| exonuclease domain-containing protein [Gramella forsetii KT0803] gi|117579142|emb|CAL67611.1| protein containing exonuclease domain [Gramella forsetii KT0803] Length = 507 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 19/160 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-----GI 65 + DIETTG K +RI EI + ++ K + + P+ +A+ L+ GI Sbjct: 8 ITDIETTGNGIKGNRITEICVI-VVQNGKVIDEYSSLVNPS------QAIPLYIETLTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DE + + P FS I E ++ ++AHN FD I AE +++D R+ Sbjct: 61 NDEMVFNAPQFSEIADEITKI--TKDCIFVAHNVNFDYNIIRAEFASLDRD-FKRKRLC- 116 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 T+ + ++ P + L ++C I I H +H A D Sbjct: 117 TVRLTKKLIPGLFSYSLGNICT--SINIPHIDRHRAKGDC 154 >gi|257886664|ref|ZP_05666317.1| exonuclease [Enterococcus faecium 1,141,733] gi|257822718|gb|EEV49650.1| exonuclease [Enterococcus faecium 1,141,733] Length = 177 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI E +++ P F ++ +F ++N +AHNA FD + L + + Sbjct: 50 VQIHGIHQEDVRNAPKFPEVWQTIQPYF-QKNRLVVAHNAAFDTKVLAGCLDYYHLE--Q 106 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P+ + + T+ +RR P N LN++C+ I + H H AL DS +++ + Sbjct: 107 PNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 159 >gi|85814043|emb|CAH05238.1| DNA polymerase III, epsilon subunit [Micromonospora echinospora] Length = 386 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 7/122 (5%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 +E+ V L D R + + P+ R P+++ HGI+ + P+F + + + Sbjct: 1 MEVAVVHLDDQGNLTREWCSLVNPD-RDLGPQSV--HGISAAEARRAPTFGQLAGQIAEL 57 Query: 87 FNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLC 145 ++ +AHN FD F+ AE +R+ P+D + + T+ +A P++ L C Sbjct: 58 LKDRVV--VAHNLSFDARFLTAEFERLGIAVPIDAASGLCTMRLASHFLPAAGRGLRD-C 114 Query: 146 KR 147 +R Sbjct: 115 RR 116 >gi|257867351|ref|ZP_05647004.1| exonuclease [Enterococcus casseliflavus EC30] gi|257873684|ref|ZP_05653337.1| exonuclease [Enterococcus casseliflavus EC10] gi|257877427|ref|ZP_05657080.1| exonuclease [Enterococcus casseliflavus EC20] gi|257801407|gb|EEV30337.1| exonuclease [Enterococcus casseliflavus EC30] gi|257807848|gb|EEV36670.1| exonuclease [Enterococcus casseliflavus EC10] gi|257811593|gb|EEV40413.1| exonuclease [Enterococcus casseliflavus EC20] Length = 180 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 7/116 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI E +++ P F ++ + ++ + N+ +AHNA FD G + L Sbjct: 53 IQIHGIRPEDVQEAPKFPDVWKQIQQYY-QLNSLIVAHNAGFDTGVLAGCLDYYGLS--Q 109 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P+ + + T+ +R+ +P N LN++C++ I + + H AL DS + + ++ Sbjct: 110 PNYLSLCTVRTSRKLYPEFTNHKLNTVCEQLQIPL--LNHHDALEDSRACAQILLR 163 >gi|54295804|ref|YP_128219.1| ribonuclease T [Legionella pneumophila str. Lens] gi|53755636|emb|CAH17138.1| ribonuclease T [Legionella pneumophila str. Lens] gi|307611851|emb|CBX01565.1| ribonuclease T [Legionella pneumophila 130b] Length = 207 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 23/191 (12%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRK 54 KN+ R +V D+ET G+D + + ++E+ V LLD K + F+ L G + Sbjct: 13 KNRFRGFLPVVVDVETAGIDPQKNALLEMCIV-LLDMDEQGLLKKESSYFEHILPFPGAE 71 Query: 55 NSPEALKLHGITDEF------LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGF 105 ++L+ + I D + + ++ + +F D + Q A + HNA FD+ F Sbjct: 72 LDQKSLEFNQI-DPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLF 130 Query: 106 INAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 I A ++R K P DT ++A L + G+ + H A+ D+ Sbjct: 131 IKAAIKRTGIKSPFHAFTCFDTATLAGLIF--GETVLAKAVQAAGLHFDSQEAHSAIYDA 188 Query: 165 HLLSDVYIKMM 175 +D++ M+ Sbjct: 189 EKTADLFCLMI 199 >gi|237808201|ref|YP_002892641.1| ribonuclease T [Tolumonas auensis DSM 9187] gi|237500462|gb|ACQ93055.1| ribonuclease T [Tolumonas auensis DSM 9187] Length = 206 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 22/194 (11%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NG 52 M K + R +V D+ET G + K D ++E+ A L +D + ++T + P G Sbjct: 1 MCLKERFRGYYPVVIDVETAGFNPKTDALLEMAATTLKMDQDGWLSLDQTIHFHVEPFEG 60 Query: 53 RKNSPEALKLHGITDEF--LKDKPS-FSSIFSEFWDFFNEQNAEW------IAHNAKFDV 103 A+ +GI D F L+ S + ++ F AE +AHNA FD Sbjct: 61 ANIEKAAIDFNGI-DPFNPLRGAVSEYDALHETFKIIRKGMKAEGCNRAIVVAHNATFDH 119 Query: 104 GFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ A +R + ++P P DT ++A + L C+ I + H AL Sbjct: 120 SFMMAASERASLKRNPFHPFATFDTAALAGLA--LGQTVLAKACQTAAIPFDNNEAHSAL 177 Query: 162 LDSHLLSDVYIKMM 175 D+ ++++ ++ Sbjct: 178 YDTERTAELFCYIV 191 >gi|308177615|ref|YP_003917021.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] gi|307745078|emb|CBT76050.1| putative DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] Length = 412 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 20/173 (11%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN---GRKNSPEALKLHGIT 66 + D ETTGL NDRI EI V + +++ + P G+++ +H I Sbjct: 8 IVDTETTGLFPGGNDRIAEIAIVTMNRQGTIVDSWETLINPQRDLGKQS------IHRIQ 61 Query: 67 DEFLKDKPSFSSIFSEF-WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + D PSF + E W +AHN FD F+ AE ++ P+ + + Sbjct: 62 SRDVLDAPSFKDLAEELHWRL---SGTVLVAHNLSFDSRFLEAEFRKCGL-PVPETFLAQ 117 Query: 126 TLSIARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R H + L C +GI + + H A+ D+ + + + M Sbjct: 118 GMCTMRMSHRYLQGAGRSLQDCCDSFGIDL--QQAHSAVGDATATATLLSRYM 168 >gi|170755669|ref|YP_001779899.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str. Okra] gi|169120881|gb|ACA44717.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str. Okra] Length = 309 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 10/169 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KD+ F I+ + D+FN N IAHNA FD+ + + L+ N + I T Sbjct: 58 PHMVKDELEFDKIWQKIKDYFN--NNLVIAHNASFDMSVLRSTLKLYN-IKMPSFEYICT 114 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ + + N LN++ G H H AL D+ S++ + + Sbjct: 115 MKLSKNFYSNIDNARLNTINNFLGYKFKH---HDALADAMACSNILLNI 160 >gi|157413038|ref|YP_001483904.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9215] gi|157387613|gb|ABV50318.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9215] Length = 248 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 25/177 (14%) Query: 6 KMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLH 63 K+ KI + D ETTGLD D +IEIG + L D S QV FL P N+ EA +++ Sbjct: 23 KIEKILILDTETTGLDENKDEVIEIGCI-LFDVSFKCVLSQVSFLFP---VNNNEAEQVN 78 Query: 64 GITDEF------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKD 116 GI+ + +D +F ++ DF +AHN +FD F L ++NK Sbjct: 79 GISADVTNISQPWEDGLNFFLKLVDYSDFI-------VAHNVEFDKKWFGKGRLPKLNKK 131 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + ++ ++ + +K +R + L + I + + H AL D +S+V+ K Sbjct: 132 WICS---LEDINWSFQKSLKNRPSVTDLALSFSIPVWNL--HRALSDCFYISEVFKK 183 >gi|297184143|gb|ADI20262.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 442 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 7/152 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR V DIE TG ++RII++ A+ +L+ + + P + P KL GIT Sbjct: 1 MRFAVIDIECTGGTFGSERIIDV-AIFVLENGEVVDQLVSLVNPE-KGIDPYVTKLTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++ P F + ++ ++AHN FD E + + D + +DT Sbjct: 59 NKMVRTAPKFYELAKRVVKI--TEDCTFVAHNISFDYRVFQQEFESMEFDYHRAT--LDT 114 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSK 157 + R P N L ++ K G+ S R + Sbjct: 115 IPYCERIFPDWENYGLKTVSKELGLVNSARHR 146 >gi|168182135|ref|ZP_02616799.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum Bf] gi|237793573|ref|YP_002861125.1| DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str. 657] gi|182674639|gb|EDT86600.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum Bf] gi|229262587|gb|ACQ53620.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum Ba4 str. 657] Length = 309 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 10/169 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D K + P + P + +HGI Sbjct: 1 MNFVAIDFETA--NEKRNSPCSIGIVVVKD-GKIVEKVHYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KD+ F I+ + +FN N IAHNA FD+ + + L+ N + I T Sbjct: 58 PHMVKDELEFDKIWEKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYN-IKMPSFEYICT 114 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ + S N LN++ G H H AL D+ S++ + + Sbjct: 115 MKLSKNFYSSIDNARLNTVNNFLGYKFQH---HDALADAMACSNILLNI 160 >gi|330836252|ref|YP_004410893.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM 17374] gi|329748155|gb|AEC01511.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM 17374] Length = 231 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 10/146 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + ++ +G + K T+ + P P +++HGIT Sbjct: 24 MEFVALDFETA--NGTHESACSLGLALMDGTGKLIDTWYQLIKPPSSFFDPANIEIHGIT 81 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--I 124 E + D PSF ++S +F ++ IAHNA FD+ + A L ++ RI Sbjct: 82 PENVADAPSFDKVWSAAREFIADRLV--IAHNATFDMTILKAMLHWYK---MEIPRIGYA 136 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYG 149 TL ++R+ P N L +L + +G Sbjct: 137 CTLRLSRKVWPEMNNYKLTTLSEVFG 162 >gi|296117576|ref|ZP_06836160.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] gi|295969307|gb|EFG82548.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes DSM 20306] Length = 467 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 10/125 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLHGIT 66 + D+ET + I +IGAV + +T +V+LC P G + + + +HGIT Sbjct: 108 VAVDVETA--NGNWGSICQIGAVRFVAGEETES--KVWLCQPPAGIDHFDDINISIHGIT 163 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +KD P+F+ E F + +AHNA+FD + + R + P+ + + Sbjct: 164 ADDVKDAPTFAEAAGELLTFMRDDVL--VAHNAQFDATALRSAFLR-TQTPVPEMALACS 220 Query: 127 LSIAR 131 L++AR Sbjct: 221 LALAR 225 >gi|170782319|ref|YP_001710652.1| DNA polymerase III subunit epsilon [Clavibacter michiganensis subsp. sepedonicus] gi|169156888|emb|CAQ02056.1| putative exonuclease [Clavibacter michiganensis subsp. sepedonicus] Length = 233 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 8/146 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG+D + RI+ + +LD +L G + A +HG+T E + Sbjct: 12 FDLETTGVDVETARIV-TACIVVLDAQGEVVERHDWLADPGVEIPAGAAAIHGVTTERAR 70 Query: 72 -DKPSFSSIFSEFWDFFNEQNAEWIA---HNAKFDVGFINAELQRINKDPL-DPSRIIDT 126 + ++ E E A +A +NA +D+ +N E R +PL D +ID Sbjct: 71 AEGRDAGAVVLEIVTTIREMFARGLALVVYNAPYDLTLLNREAVRHGVEPLRDTGPVIDP 130 Query: 127 LSI--ARRKHPSSRNDLNSLCKRYGI 150 L I A + + L+ + YG+ Sbjct: 131 LVIDKAVDTYRRGKRTLSVAAEHYGV 156 >gi|170727178|ref|YP_001761204.1| exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC 51908] gi|169812525|gb|ACA87109.1| Exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC 51908] Length = 226 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 31/171 (18%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + D+E TGLD++ D+I+ IG V + L SK G+ + +HGI Sbjct: 44 LAIDLEMTGLDAQFDQILSIGIVPIEKGRLILSKAEHKLVKIEGSVGQSAT-----IHGI 98 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-----QRINKDPLDP 120 D L S + W Q +AH++ D+ F+ L QR+ Sbjct: 99 LDHHLNSAVSPEEAMT--WFLERCQGQMLVAHHSPLDLAFLQKGLSTHFRQRVTLMA--- 153 Query: 121 SRIIDTLSIARRK----HPSSRND---LNSLCKRYGITISHRSKHGALLDS 164 IDTL+I +R+ H + L + RYG+ + + H AL+D+ Sbjct: 154 ---IDTLAIEKRRLMRQHEVLKEGALRLGASRARYGLPVY--AAHNALIDA 199 >gi|85711670|ref|ZP_01042727.1| DNA polymerase III subunit epsilon [Idiomarina baltica OS145] gi|85694530|gb|EAQ32471.1| DNA polymerase III subunit epsilon [Idiomarina baltica OS145] Length = 244 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 5/144 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD + + I+ I V + + ++ + + E++ +HGIT Sbjct: 55 VAVDFETTGLDCQRNSIVSIAVVPMSAQRIFMSQARQWVVKPRQDLTDESVVIHGITHSD 114 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDTLS 128 ++ P +I E D + W+ H + F+ + R N+ P +IDT++ Sbjct: 115 IQSAPDIEAILPELLDLVAGKI--WVVHYNGIERPFLQKAMDARFNEHIHFP--VIDTMA 170 Query: 129 IARRKHPSSRNDLNSLCKRYGITI 152 I R H R+ + L + ++I Sbjct: 171 IEARFHRQRRSFWSRLMGKRPLSI 194 >gi|320457724|dbj|BAJ68345.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 235 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 11/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + I EIGAV + ++ FQ + P R + L GITD Sbjct: 35 VALDLETTGFYPNSCAITEIGAVRVRKGHIVDQ-FQQLVNPL-RPIPRQITTLTGITDAM 92 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + D + F + A + HN FD+ F++ + I + Sbjct: 93 VADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD-Y 151 Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 DT+ I+R P+ R+ L L R+G I+ +H AL D+ Sbjct: 152 DTMQISRALFPAQRHHRLADLIVRFG--IADNEEHRALSDA 190 >gi|298498457|ref|ZP_07008264.1| gp39 [Vibrio cholerae MAK 757] gi|297542790|gb|EFH78840.1| gp39 [Vibrio cholerae MAK 757] Length = 188 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D ETTGLDS + RI+E+ ++ K + LC SPE +HGIT++ Sbjct: 12 AIILDTETTGLDS-DARILEVSIIDAQTGIKLYSSLVNPLC----SISPEVTAIHGITND 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 + D P+F ++++ + ++ + +N FD Sbjct: 67 MVIDMPTFDKVWNDIKGYLSD--SVIYVYNLDFD 98 >gi|310767851|gb|ADP12801.1| exodeoxyribonuclease X [Erwinia sp. Ejp617] Length = 221 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V++++ N + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGLQGG---VVEVASVDVINGQILN-PMSDLISPD-RPISRQAMAVHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP+ + + ++AHNA FD L ++ D I T+++A Sbjct: 59 RGKPAIEQAIGRY-----HGSPFYVAHNASFD----RRMLPEMHGD------WICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 RR P + +L + + +S + H AL D ++ + + +++M Sbjct: 104 RRLWPGLKYTNEALRQSLQLEVSPPADLHAHRALYDCYVTAALLMRIM 151 >gi|288802867|ref|ZP_06408304.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18] gi|288334684|gb|EFC73122.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18] Length = 896 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 63/146 (43%), Gaps = 23/146 (15%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAV---------ELLD-YSKTNRTFQVFLCPNGRK 54 N+ +VFD ETTGL+ D IIEI A+ E LD Y +T++ L G K Sbjct: 510 NEEEIVVFDTETTGLNVFQDDIIEIAAIRIKGGEVVGEPLDLYIETDKPILPML---GDK 566 Query: 55 NSPEALKLHG--ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 +P H T E L S S F + + + HNA +D ++ LQR Sbjct: 567 ENPMYAIYHEKMSTGELL----SPSDALQRFLAYVG--TSPILGHNANYDYNILDNNLQR 620 Query: 113 INKDPLDPS--RIIDTLSIARRKHPS 136 KD + R D+L + R PS Sbjct: 621 YCKDTMQAHDIRCFDSLKLIRLLAPS 646 >gi|69245046|ref|ZP_00603204.1| Exonuclease [Enterococcus faecium DO] gi|314947594|ref|ZP_07851004.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0082] gi|68196047|gb|EAN10479.1| Exonuclease [Enterococcus faecium DO] gi|313645987|gb|EFS10567.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0082] Length = 201 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI E +++ P F ++ +F ++N +AHNA FD + L + + Sbjct: 74 VQIHGIHQEDVRNAPKFPEVWQTIQPYF-QKNRLVVAHNAAFDTKVLAGCLDYYHLE--Q 130 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P+ + + T+ +RR P N LN++C+ I + H H AL DS +++ + Sbjct: 131 PNYLSLCTVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 183 >gi|149408370|ref|YP_001294473.1| hypothetical protein ORF056 [Pseudomonas phage F8] gi|219523927|ref|YP_002455988.1| hypothetical protein PB1_gp58 [Pseudomonas phage PB1] gi|190333523|gb|ACE73778.1| conserved hypothetical protein [Pseudomonas phage PB1] Length = 184 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 77/184 (41%), Gaps = 24/184 (13%) Query: 7 MRKIVFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MR V+D ETTGL K RIIE V + +T F+C G Sbjct: 1 MRFAVWDTETTGLPFHQRVSLRKQPRIIEFAGV--ITDGETILDEVEFICNPGIVIEEII 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR------- 112 K+ G+ +E L PSF + DFF++ +A IAHN FD + +L R Sbjct: 59 TKITGLKNEDLIKHPSFLDQRQKVRDFFSKADAN-IAHNLPFDKFMLTCDLARGKLGLEE 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +N LD + ++ + R L L + Y + KH AL D LL +V Sbjct: 118 VNFPSLDICTVEESAPLF-----GHRMRLQHLYEHY--CGPYVQKHRALDDVRLLHEVCK 170 Query: 173 KMMV 176 +M V Sbjct: 171 RMGV 174 >gi|217980141|ref|YP_002364191.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] gi|217508312|gb|ACK55097.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] Length = 201 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 8/104 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D ETTGL + ++EI ++ N + P+G + EA+ +HGITD Sbjct: 22 ALILDTETTGL-GDDAEVVEIAVID----CAGNVLLDTLVRPSGPVPA-EAVAIHGITDA 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 L D P++S I F + + ++ +FD I+ +R Sbjct: 76 MLADAPTWSEIHDRFCCLVEGRQV--VIYSREFDARLISQTARR 117 >gi|227524779|ref|ZP_03954828.1| DNA-directed DNA polymerase III [Lactobacillus hilgardii ATCC 8290] gi|227088056|gb|EEI23368.1| DNA-directed DNA polymerase III [Lactobacillus hilgardii ATCC 8290] Length = 177 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + +HGI + + + P+F ++ F N +AHNA FD + L+R D L Sbjct: 50 INVHGIHKQDVANAPTFPELWDHIAPLFTA-NKLVVAHNASFDNSVLKRTLERY--DLLL 106 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + +DTL +++ +P N LN++C I + H H AL DS +++ + Sbjct: 107 PHYLTLDTLKTSKQFYPQMVNHKLNTVCDELHIELEHH--HNALDDSVACANILL 159 >gi|227510619|ref|ZP_03940668.1| DNA-directed DNA polymerase III [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190271|gb|EEI70338.1| DNA-directed DNA polymerase III [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 177 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + +HGI + + + P+F ++ F N +AHNA FD + L+R D L Sbjct: 50 INVHGIHKQDVANAPTFPELWDHIAPLFTA-NKLVVAHNASFDNSVLKRTLERY--DLLL 106 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + +DTL +++ +P N LN++C I + H H AL DS +++ + Sbjct: 107 PHYLTLDTLKTSKQFYPQMVNHKLNTVCDELHIELEHH--HNALDDSVACANILL 159 >gi|213691637|ref|YP_002322223.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523098|gb|ACJ51845.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 211 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 11/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + I EIGAV + ++ FQ + P R + L GITD Sbjct: 11 VALDLETTGFYPNSCAITEIGAVRVRKGHIVDQ-FQQLVNPL-RPIPRQITTLTGITDAM 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + D + F + A + HN FD+ F++ + I + Sbjct: 69 VADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACAD-Y 127 Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 DT+ I+R P+ R+ L L R+G I+ +H AL D+ Sbjct: 128 DTMQISRALFPAQRHHRLADLIVRFG--IADNEEHRALSDA 166 >gi|238762297|ref|ZP_04623269.1| Exodeoxyribonuclease 10 [Yersinia kristensenii ATCC 33638] gi|238699644|gb|EEP92389.1| Exodeoxyribonuclease 10 [Yersinia kristensenii ATCC 33638] Length = 219 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 27/170 (15%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET G + I+EI +V++++ N + P+ R S +A+ +H IT+E + Sbjct: 5 VIDTETCGFEGG---IVEIASVDVVNGVVIN-PMSDLVSPD-RPISLDAMIIHHITEEMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP + ++ + + ++AHNA FD G + P + I TL +A Sbjct: 60 EGKPRIAVAVRKY-----QGSPYYVAHNAPFDRGVL----------PEMGGQWICTLKLA 104 Query: 131 RRKHPSSRNDLNSLCKRYGITIS-----HRSKHGALLDSHLLSDVYIKMM 175 R +P ++ L RY + ++ + H AL D ++ + + ++M Sbjct: 105 RMLYPDIKHSNQYL--RYALRLNVSVPDNLYPHRALYDCYVTAALLQRIM 152 >gi|217980123|ref|YP_002364173.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] gi|217508294|gb|ACK55079.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T] Length = 201 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 23/126 (18%) Query: 9 KIVFDIETTGLDSKND----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 ++ D ETTGL + +I+ LLD + P+G + EA +HG Sbjct: 22 ALILDTETTGLGDDAEVVELAVIDCAGAVLLD---------TLVRPSGPVPA-EAAAIHG 71 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDP------ 117 ITD L P++S + + F + + +N +FDV I+ +R + P Sbjct: 72 ITDAMLAGAPTWSELHARFCGLVEGRQV--VIYNHEFDVRVISQTARRYGLQAPQGFDQV 129 Query: 118 LDPSRI 123 LDP RI Sbjct: 130 LDPGRI 135 >gi|123965921|ref|YP_001011002.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9515] gi|123200287|gb|ABM71895.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9515] Length = 270 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 17/190 (8%) Query: 6 KMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K+ KI + D ETTGLD D IIEIG + SK+ + FL P +S EA ++G Sbjct: 45 KIEKILILDTETTGLDENKDEIIEIGCILFHVTSKSVLSQVSFLFP---VSSNEAEHVNG 101 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRI 123 I+ E K + + F + + +AHN +FD F L + K+ + Sbjct: 102 ISAEVSNIKQPWEEGLNFFLKLVDCADLI-VAHNVEFDKKWFGKGRLPNLEKNWICS--- 157 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MMVG 177 ++ ++ + +K+ +R + L + I + S H AL D +S+V+ K +++ Sbjct: 158 LEDINWSFQKNLKNRPSVTDLALSFSIPV--WSLHRALSDCFYISEVFKKCENLEELLIK 215 Query: 178 GSQINFGFKT 187 ++ F +K Sbjct: 216 ATEPRFLYKA 225 >gi|52843158|ref|YP_096957.1| ribonuclease T [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|19880967|gb|AAM00600.1| Rnase T [Legionella pneumophila] gi|52630269|gb|AAU29010.1| ribonuclease T [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 207 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 23/191 (12%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRK 54 KN+ R +V D+ET G+D + + ++E+ V LLD K + F+ L G + Sbjct: 13 KNRFRGFLPVVVDVETAGIDPQKNALLEMCIV-LLDMDEQGLLKKDSSYFEHILPFPGAE 71 Query: 55 NSPEALKLHGITDEF------LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGF 105 ++L+ + I D + + ++ + +F D + Q A + HNA FD+ F Sbjct: 72 LDQKSLEFNQI-DPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLF 130 Query: 106 INAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 I A ++R K P DT ++A L + G+ + H A+ D+ Sbjct: 131 IKAAIKRTGIKSPFHAFTCFDTATLAGLIF--GETVLAKAAQAAGLHFDSQEAHSAIYDA 188 Query: 165 HLLSDVYIKMM 175 +D++ M+ Sbjct: 189 EKTADLFCLMI 199 >gi|15889361|ref|NP_355042.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str. C58] gi|15157207|gb|AAK87827.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens str. C58] Length = 202 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 6/129 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + + +G + D + R + + P + SP + +HGI Sbjct: 1 MKTIAIDFETA--NEERGSACSVGLAWIED-GQIVRVEERLIRPRDMRFSPFNIAVHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P F + EF D F+ A IAHNA FD + A + D S + + Sbjct: 58 PRDVEDAPEFPEVMEEFIDDFH--GATMIAHNAAFDFSVMRASFDKYRLSYPDLSYLC-S 114 Query: 127 LSIARRKHP 135 + IAR P Sbjct: 115 VKIARHVWP 123 >gi|159899742|ref|YP_001545989.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC 23779] gi|159892781|gb|ABX05861.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 927 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 15/157 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 I D+ETTGL+ D IIE+GAV+ ++ T+Q + P ++ P + +L GI Sbjct: 6 IALDLETTGLEPGRDEIIEVGAVKFRG-NEVLETYQTLVKP--KQVLPIKIARLTGIDAH 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+F+SI + F ++ I H+ D+ F+ + ++ + DT Sbjct: 63 ELTTAPTFNSIGGQLAKFL--KSYPIIGHSVDNDLRFLQQQGLKVTQPHY------DTFD 114 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 +A P N L+++ + + I H H AL D+ Sbjct: 115 LATLLIPQLPNYSLSTIAEH--LQIQHPDAHRALADA 149 >gi|289664483|ref|ZP_06486064.1| exonuclease, RNase T and DNA polymerase III [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 322 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 7/102 (6%) Query: 5 NKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N + I D ETTGL+ D ++EI V + +CP PEA +H Sbjct: 46 NSVPPIFVDTETTGLNQDGRDEVLEIAIVN----ADGTILLNTLVCPARNTAWPEAQAIH 101 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 GI+ + + PS+S + + + + +NA FD F Sbjct: 102 GISPQDVAGAPSWSGLLPKIASICAGKTV--VFYNAPFDTSF 141 >gi|262194125|ref|YP_003265334.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077472|gb|ACY13441.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 11/152 (7%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNS-PEALKLH 63 M+ +VF D ETTGLD + I+EI A+ + + + R + + P +++ PEAL+++ Sbjct: 1 MQPLVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPEALEVN 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPS 121 G D S +E + A HN FD F+ A + P LD Sbjct: 61 GYRRRAWADAVSLGDAMAELAPML--EGAVLAGHNVAFDRRFLEAAWDYVGHRPENLD-H 117 Query: 122 RIIDTLSIARRKHPSSRND---LNSLCKRYGI 150 +DT ++A + D L +C G+ Sbjct: 118 HALDTAALAFPLLMAGEIDSLSLTPVCAHLGV 149 >gi|184200651|ref|YP_001854858.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila DC2201] gi|183580881|dbj|BAG29352.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila DC2201] Length = 193 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 14/155 (9%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSEFWD 85 +G V + D + + + P G P +++HGI + P+F WD Sbjct: 21 CALGVVRVRDGQVVDTRYSLIRPPAGHDAFEPGNVRIHGIRPAEVTHAPTFD----RLWD 76 Query: 86 FFNEQ------NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN 139 + E +A +AHNA FD G + A + +DP P TL +AR + Sbjct: 77 WMCENITPEDPDAVLVAHNAVFDTGVVKAANRACGRDP-RPWDYACTLRLARAAYTLRSY 135 Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L S + G + H AL D+ + + + + Sbjct: 136 ALPSASRAAGAEVE--DHHNALSDALACAGIVLDL 168 >gi|149195011|ref|ZP_01872104.1| DNA polymerase III, epsilon chain [Caminibacter mediatlanticus TB-2] gi|149134932|gb|EDM23415.1| DNA polymerase III, epsilon chain [Caminibacter mediatlanticus TB-2] Length = 274 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 7/108 (6%) Query: 11 VFDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD ETT + II ++ +D +T +++ L P K S EA ++H I E Sbjct: 106 VFDTETTDIYG---YIISYAFVIQDMDSLETKEIYEL-LNPKA-KISEEAYEVHKIKQED 160 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 L+DKP+F D FN + + HN FD G + EL+R P Sbjct: 161 LEDKPTFEEKKEYILDLFNSVDM-IVGHNVFFDFGVLKRELERAKHFP 207 >gi|239918000|ref|YP_002957558.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665] gi|281415824|ref|ZP_06247566.1| DNA polymerase III subunit epsilon [Micrococcus luteus NCTC 2665] gi|239839207|gb|ACS31004.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665] Length = 228 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 11/159 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD---- 67 FD+ETTG D + I+ V + ++ + + + + P G EA ++HG+T Sbjct: 11 FDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWLVDP-GVPIPAEAAEVHGVTTERAQ 69 Query: 68 -EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + + I D F +A N +D ++ E +R PL+ +ID Sbjct: 70 AEGMPAAQGVTEITETLRDLFA-AGIPVVAFNGVYDFTVMDREARRHGLTPLEARPVIDP 128 Query: 127 LSIARR--KHPSSRNDLNSLCKRYGITI--SHRSKHGAL 161 + ++ + + L+++ + YG+T+ +H S AL Sbjct: 129 FVLDKQVDRFRKGKRTLSAVSEHYGVTLENAHTSAADAL 167 >gi|303235624|ref|ZP_07322231.1| UvrD/REP helicase [Prevotella disiens FB035-09AN] gi|302484071|gb|EFL47059.1| UvrD/REP helicase [Prevotella disiens FB035-09AN] Length = 893 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 18/151 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-------GRKNSPEALKL 62 +VFD ETTGLD D IIEI A+ L + +++ N G +P L Sbjct: 513 VVFDTETTGLDVYEDDIIEIAAIRLHNGKPVGEPLDLYIETNRPILEKLGENENP----L 568 Query: 63 HGITDEFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD- 119 + I E L + F FW++ + A + HN +D ++ L R +D ++ Sbjct: 569 YPIYHEKLAKGELLQPNEAFQLFWNYVGD--ATLLGHNVMYDRNILHHNLLRHAQDCMEN 626 Query: 120 -PSRIIDTLSIARRKHPS-SRNDLNSLCKRY 148 + + D+L I R P+ L +L +R+ Sbjct: 627 HANPVFDSLKIMRLLQPNLPSYKLETLLERF 657 >gi|56751271|ref|YP_171972.1| hypothetical protein syc1262_c [Synechococcus elongatus PCC 6301] gi|81299062|ref|YP_399270.1| exonuclease [Synechococcus elongatus PCC 7942] gi|56686230|dbj|BAD79452.1| unknown protein [Synechococcus elongatus PCC 6301] gi|81167943|gb|ABB56283.1| Exonuclease [Synechococcus elongatus PCC 7942] Length = 256 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 13/154 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEF 69 V D+ETTG R+IE+G ++ FQ N PEA+ + GIT + Sbjct: 24 VVDVETTGFKPPQARVIELGILQATLAEGIQ--FQQAELLNPGIPIPEAIAQFTGITTDL 81 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTLS 128 + S+ Q +AHN FD F+ AE Q++ D P+ + T+ Sbjct: 82 IATADPPESVLPPL--LPRLQTGILVAHNLPFDYRFLTAEYQQLGLDFERSPTEQLCTVQ 139 Query: 129 IARR---KHPSSRNDLNSLCKRYGITI--SHRSK 157 ++R+ PS L L + +G + SHR+ Sbjct: 140 MSRQLLADLPS--RSLPQLVQHFGFPVGQSHRAA 171 >gi|289705138|ref|ZP_06501542.1| exonuclease [Micrococcus luteus SK58] gi|289558166|gb|EFD51453.1| exonuclease [Micrococcus luteus SK58] Length = 228 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 11/159 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD---- 67 FD+ETTG D + I+ V + ++ + + + + P G EA ++HG+T Sbjct: 11 FDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWLVDP-GVPIPAEAAEVHGVTTERAQ 69 Query: 68 -EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + + I D F +A N +D ++ E +R PL+ +ID Sbjct: 70 AEGMPAAQGVAEITETLRDLFA-AGIPVVAFNGVYDFTVMDREARRHGLTPLEARPVIDP 128 Query: 127 LSIARR--KHPSSRNDLNSLCKRYGITI--SHRSKHGAL 161 + ++ + + L+++ + YG+T+ +H S AL Sbjct: 129 FVLDKQVDRFRKGKRTLSAVSEHYGVTLENAHTSAADAL 167 >gi|308050117|ref|YP_003913683.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] gi|307632307|gb|ADN76609.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] Length = 223 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+E TGLD + D I+ I AV ++ +++ + +G ++ +HGI D Sbjct: 38 LALDLELTGLDVRQDAILSIAAVPIIRGRLVLAQSWHQLVSIDG--GVGQSATIHGIHDR 95 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D + H+ D+GF+ A Q L P ++IDTL Sbjct: 96 HLTDAQPLEQALLAL--LPQLAGRVLVCHHGGLDLGFLQAGFQHHFGQGL-PLKVIDTLK 152 Query: 129 IARRK 133 I +R+ Sbjct: 153 IEQRR 157 >gi|158335553|ref|YP_001516725.1| exonuclease [Acaryochloris marina MBIC11017] gi|158305794|gb|ABW27411.1| exonuclease [Acaryochloris marina MBIC11017] Length = 168 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 10/163 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET D + D IG + + + +R+ FL R+ + +HGIT Sbjct: 11 VAIDFETA--DYQRDSACAIGVIRVENDQIVDRSH--FLIRPPRQKF-QFTYIHGITWSD 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K P+F+ ++ F + AHNA FD +NA Q DP+ P + T+ + Sbjct: 66 VKHHPTFAELWPNLQPKFAGSDFV-AAHNANFDRSVLNACCQAAELDPM-PLPFLCTVKL 123 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 AR L ++C+ I + H H AL D+ + + I Sbjct: 124 AREVWNIRPTKLPNVCEFLDIPLQH---HQALSDAEACAKIVI 163 >gi|163937886|ref|YP_001642772.1| exonuclease RNase T and DNA polymerase III [Bacillus weihenstephanensis KBAB4] gi|163865741|gb|ABY46797.1| Exonuclease RNase T and DNA polymerase III [Bacillus weihenstephanensis KBAB4] Length = 271 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 13/149 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG-ITDEF 69 VFD+ETTGLD KN++++EI A+ D + + + N K P+ L + + D Sbjct: 16 VFDLETTGLDYKNEQVVEIAAIR-TDLEQELGRMHILVKLNEGKKLPDFLVDNTDLRDYM 74 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + F N+ +AH A FD ++ L + P + T SI Sbjct: 75 LVNGMVEHQALINLMAFMG--NSIVVAHYAPFDFAYLFKAL-------IAPELFLCTRSI 125 Query: 130 ARRKHPSSRNDLNSLCKRYGITI--SHRS 156 R P L +R G+ + +HR+ Sbjct: 126 ERLLTPDKSASLAPTAERRGVKLEGAHRA 154 >gi|323358024|ref|YP_004224420.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum StLB037] gi|323274395|dbj|BAJ74540.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum StLB037] Length = 405 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 11 VFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V D+ETTGL K+DRI+E+ V + ++ + P A ++HGI+ Sbjct: 7 VIDLETTGLFPQKHDRIVEVAIVHVSPAGVVEGVWETLVNP---MRDMGAQRIHGISAAA 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 P FS++ + +AHNA FD F+ ++ D + + T+ + Sbjct: 64 AARAPEFSALAPSIASLLRGRVP--VAHNASFDARFLAHSMEHAGLACPDLAYWMCTMQL 121 Query: 130 A 130 A Sbjct: 122 A 122 >gi|269218897|ref|ZP_06162751.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212008|gb|EEZ78348.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 240 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 19/155 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD ETTG+D K DR++ V + + + R +L G + A +HGIT E Sbjct: 14 IGFDTETTGIDPKRDRLVTCSLVAVTEEGVSKR---YWLADPGVEIPERAGAVHGITTER 70 Query: 70 LK--DKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKDPLDPSR-- 122 + +PS + E E +A NA +D + +EL R + P R Sbjct: 71 ARAEGRPS-KEVLEEVAALLAEHMGRGHPAVAFNATYDFTLLESELDR-HGLPTLAERLG 128 Query: 123 -----IIDTLSIARR--KHPSSRNDLNSLCKRYGI 150 ++D + R ++ + L LC+ YG+ Sbjct: 129 GEVFPVVDPYLLDRSADRYRKGKRRLEDLCRHYGV 163 >gi|266622988|ref|ZP_06115923.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] gi|288865254|gb|EFC97552.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] Length = 595 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 8/77 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66 +VFDIETTG + +RIIEIGAV++++ T+R F F+ P + P E +L I Sbjct: 524 VVFDIETTGFSPEKNRIIEIGAVKVVNGVITDR-FSTFVNP----DVPIPFEIEQLTSIN 578 Query: 67 DEFLKDKPSFSSIFSEF 83 D + P I +F Sbjct: 579 DNMVLSYPKIDVILPQF 595 >gi|227494840|ref|ZP_03925156.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM 15436] gi|226831292|gb|EEH63675.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM 15436] Length = 232 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 18/161 (11%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD---- 67 FD+ETTG+D+ DRI+ + E+ S+ + P G + A+ +HGIT+ Sbjct: 11 FDLETTGVDTARDRIV-TASYEVRCGSEVLEQVTLLFNP-GVEIPQSAIDVHGITNERAQ 68 Query: 68 -EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR---- 122 E L + + ++ + +E A + N +FDV + EL+R P R Sbjct: 69 AEGLDPRVGLEQLAAKLVSYLSE-GAPLVGFNVQFDVTLLENELRRYGL-PTVAERLGGR 126 Query: 123 ---IIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKH 158 I+D L + R + + L L + YGI + H Sbjct: 127 FAPIVDPLVLDRELDRWRKGKRKLVDLLEVYGIAVDPDELH 167 >gi|54298969|ref|YP_125338.1| ribonuclease T [Legionella pneumophila str. Paris] gi|53752754|emb|CAH14189.1| ribonuclease T [Legionella pneumophila str. Paris] Length = 207 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 23/191 (12%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRK 54 KN+ R +V D+ET G+D + + ++E+ V LLD K + F+ L G + Sbjct: 13 KNRFRGFLPVVVDVETAGIDPQKNALLEMCIV-LLDMDEQGLLKKESSYFEHILPFPGAE 71 Query: 55 NSPEALKLHGITDEF------LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGF 105 ++L + I D + + ++ + +F D + Q A + HNA FD+ F Sbjct: 72 LDQKSLAFNQI-DPYQPLRFAVDEQTALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLF 130 Query: 106 INAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 I A ++R K P DT ++A L + G+ + H A+ D+ Sbjct: 131 IKAAIKRTGIKSPFHAFTCFDTATLAGLIF--GETVLAKAVQAAGLHFDSQEAHSAIYDA 188 Query: 165 HLLSDVYIKMM 175 +D++ M+ Sbjct: 189 EKTADLFCLMI 199 >gi|218672255|ref|ZP_03521924.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli GR56] Length = 197 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 5/104 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + + +G + ++ + R + + P + S + +HGI Sbjct: 1 MKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 E ++D P F + EF D F + A IAHNA FD A L Sbjct: 58 PEDVEDAPEFPEVMDEFHDDF--RGATMIAHNAAFDFSVWRASL 99 >gi|116629923|ref|YP_815095.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus gasseri ATCC 33323] gi|282851483|ref|ZP_06260848.1| exonuclease [Lactobacillus gasseri 224-1] gi|311110442|ref|ZP_07711839.1| exonuclease [Lactobacillus gasseri MV-22] gi|116095505|gb|ABJ60657.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus gasseri ATCC 33323] gi|282557451|gb|EFB63048.1| exonuclease [Lactobacillus gasseri 224-1] gi|311065596|gb|EFQ45936.1| exonuclease [Lactobacillus gasseri MV-22] Length = 177 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGIT E +K+ P+ + ++ + + + AHNA+FD + L R N P Sbjct: 50 IRIHGITAEDVKNAPTMAEVWPKIKKLY-QPGMLVAAHNARFDCRVMEKSLARYNI-PAP 107 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 IDTL+ ++ P+ N L+++ + I + H H AL DS + + I+ Sbjct: 108 HYFAIDTLATSKAFEPNLPNHKLDTVSEALDINLWHH--HNALSDSEACAGILIE 160 >gi|242371797|ref|ZP_04817371.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W1] gi|242350498|gb|EES42099.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W1] Length = 213 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 11/156 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + K I +G V+++D ++ +F + P + +HGI E Sbjct: 36 VALDFETA--NGKRTSICSVGMVKVID-NQITESFYTLVNPFDYFTETN-INVHGIKPED 91 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128 ++ PSF ++ F ++ +AHNA FD+ ++ L+++N + PS + Sbjct: 92 VEGAPSFEYVYPYMLQFIDQ--LPVVAHNAAFDMNVLHQSLKQLNIE--TPSMTYFCSYQ 147 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +A+R + R L L Y + H AL D+ Sbjct: 148 LAKRTIDAYRYGLKHLMNHYKLDF--HGHHDALNDA 181 >gi|262274601|ref|ZP_06052412.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] gi|262221164|gb|EEY72478.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] Length = 245 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 5/121 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGLD + II IG V R + ++ R E++ HGIT Sbjct: 56 VALDLETTGLDPSQNDIISIGLVPFTLDRIYCRDAKHWIVKPRRPLEAESVVFHGITHSD 115 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128 + D P I E + + +AH + + F+ A ++ R+ + L P ++DTL Sbjct: 116 VSDAPDLRRILEEV--LASLEGKIVVAHYRRIERDFLEAAVESRLGESLLFP--VVDTLE 171 Query: 129 I 129 I Sbjct: 172 I 172 >gi|170738412|ref|YP_001767067.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46] gi|168192686|gb|ACA14633.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] Length = 223 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 4/104 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLD + D I+ + A+ + D T+ + + + + R +SPEA+K+H + + Sbjct: 32 VALDCETTGLDPRRDEIVAVAAIRIRGDRILTSESLRATVR-SDRPSSPEAIKVHRLLNA 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 +++ ++ F + + + +FDV ++ ++R Sbjct: 91 EIREAEPLDAVLPALLRFIGGR--PIVGYYTEFDVRMLDKSVRR 132 >gi|260062630|ref|YP_003195710.1| DNA polymerase III subunit epsilon [Robiginitalea biformata HTCC2501] gi|88784197|gb|EAR15367.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata HTCC2501] Length = 222 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 15/174 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG ++DRI+ IGA+ + + + + F+ + ++ +HGI Sbjct: 35 VVLDTETTGFSPQHDRILSIGALRVSQGRIRVKESLERFV--KQERFDRASVPIHGILRT 92 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + +E DF + + + H+ FD I A QR PL + +IDT Sbjct: 93 GSSERVTEREALAELLDFTGQ--SPVVGHHISFDQAMIQAACQRSGLGPLR-NPLIDTGL 149 Query: 129 IARR---KHP----SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + K P L+ L ++ IS + +H AL D+++ + ++ ++ Sbjct: 150 LYGHTLIKSPLLIKKDHYTLDELADKF--DISCKDRHTALGDAYITAIAFLNIL 201 >gi|315644054|ref|ZP_07897224.1| DNA polymerase III subunit epsilon [Paenibacillus vortex V453] gi|315280429|gb|EFU43718.1| DNA polymerase III subunit epsilon [Paenibacillus vortex V453] Length = 397 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 12/171 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD+E T +N ++EIGAV + + +TF ++ P+G P A+ GI + Sbjct: 27 VFDLEATDDQVENAEVVEIGAVRMDSTGIQEEQTFHTYIKPSGPIPQPIAVS-TGIYNAD 85 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRIN-KDPLDPSRIIDTL 127 ++ P F + F F NE ++ + +F + + E R +P +P ID Sbjct: 86 VEGSPRFPKGYGMFTGFANE--CIFVTYGGYEFVLPLLQRECARHGLPEPANPC--IDIK 141 Query: 128 SIARRKHPSSRNDLN--SLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175 ++ HP +++ + YG T SH+S + + + L+ +++ MM Sbjct: 142 AMFAGLHPEVEDEITMEMMMDYYGFETTSHKSGN-RIGNYMLIGHIWMDMM 191 >gi|86145828|ref|ZP_01064156.1| DNA polymerase III, epsilon chain [Vibrio sp. MED222] gi|85836283|gb|EAQ54413.1| DNA polymerase III, epsilon chain [Vibrio sp. MED222] Length = 238 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 15/186 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGLDS+ D I+ +G V+++ + + N + + E ++ IT + Sbjct: 52 IVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLDNDSQINAETAVINHITPQM 111 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ +SI FF + I AH + FI+ L R P +DTL Sbjct: 112 LEEG---ASIHDAMLTFFEAAKGKIIVAHACVVEEKFISQYLLRCYGLRQLPLLWLDTLC 168 Query: 129 IARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGS 179 I + + N L RYG + + H AL D+ +++++ K +V Sbjct: 169 IEKSMEKAISNHEEVDLTLAGTRDRYG--LPEYNSHNALADAVSTAELFLAQQKRVVPND 226 Query: 180 QINFGF 185 ++ F Sbjct: 227 EVTLSF 232 >gi|83649371|ref|YP_437806.1| putative exonuclease [Hahella chejuensis KCTC 2396] gi|83637414|gb|ABC33381.1| putative exonuclease [Hahella chejuensis KCTC 2396] Length = 189 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 17/174 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGLD + + +IE+ +++ + F + P EA +HGIT E Sbjct: 19 VVLDTETTGLDDQAE-VIEVSVMDM----RGKVLFDQLVRPL-NPVPDEAADIHGITSES 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L DKP+F ++ + + +A+NA FD + ++ + Sbjct: 73 LADKPNFPDVYHSLKRVISGKTV--VAYNADFDSRLLMQTCAAYGLPVIEADWQCAMNAY 130 Query: 130 AR-RKHPSS------RNDLNSLCKRYGITI--SHRSKHGALLDSHLLSDVYIKM 174 R RK P + R L + GI + +HR+ ++ VY K+ Sbjct: 131 TRYRKEPDAKRGGYRRQSLAKAAAQMGIEVHGAHRALADCFTTVEVIGSVYSKL 184 >gi|291532696|emb|CBL05809.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Megamonas hypermegale ART12/1] Length = 142 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 61/113 (53%), Gaps = 9/113 (7%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +K+HGI + +++ P+F+ I+++ + + + IAHNA FD+G + + + + N Sbjct: 8 IKIHGIIPQMVENAPTFADIWNDLRMYLDNRIV--IAHNAFFDMGVLRSCIWKYNLA--K 63 Query: 120 PS-RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDV 170 P + T+ IAR+ P N LN+L + + I H H AL D+ + + + Sbjct: 64 PQFKTACTVQIARKVWPQLPNHKLNTLGEFFQIQFKH---HDALDDAKVCAKI 113 >gi|311741567|ref|ZP_07715391.1| probable DNA polymerase III epsilon subunit [Corynebacterium pseudogenitalium ATCC 33035] gi|311303737|gb|EFQ79816.1| probable DNA polymerase III epsilon subunit [Corynebacterium pseudogenitalium ATCC 33035] Length = 442 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 6/95 (6%) Query: 12 FDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITD 67 D +++ ND I +IGAV D +T+ + P G ++ + + +HGIT Sbjct: 98 LDFTAVDVETANDNWGSICQIGAVRFRDGQETDSRSWLCTPPPGLEHFADINVSIHGITA 157 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 + +K P+F+ + E +DF +AHNA+FD Sbjct: 158 DDVKGAPAFADVAKELFDFLGGDV--LVAHNAQFD 190 >gi|332637276|ref|ZP_08416139.1| DNA-directed DNA polymerase III subunit epsilon [Weissella cibaria KACC 11862] Length = 177 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 7/106 (6%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+HGIT+ + D P F ++ + F+ N IAHNA FD G + L P Sbjct: 51 KIHGITEADVVDAPKFPEVWEQIKQFYTA-NQLVIAHNAPFDNGVLRETLGHYGISA--P 107 Query: 121 SRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDS 164 + +DT+ +R+ +P N LN++ I + H H AL D+ Sbjct: 108 HYLSLDTVRTSRKLYPQLPNHKLNTVADALQIDLKHH--HNALDDT 151 >gi|300779659|ref|ZP_07089515.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] gi|300533769|gb|EFK54828.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] Length = 959 Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 6/103 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ TTG +DRI+E+G V L + T++ + PN +H +T L Sbjct: 9 VIDVVTTGFGG-SDRIVEVGVVLLDQQLREQGTWETLVQPN---RDIATCHVHKLTATHL 64 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 K+ P++ + E + +AHNA F+ F++ E R+ Sbjct: 65 KNAPTWEEVAPELAQVIRGRIG--VAHNASFEKRFLSKEFCRV 105 >gi|160689454|gb|ABX45585.1| polymerase C [Bacillus pumilus] Length = 259 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +R+ K + +IDTL + R +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNTAYKRLLKTDKASNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQINFGF 185 + D+ + +KM+ ++ + + Sbjct: 59 IYDAEATGYLMLKMLKDAAEKDIAY 83 >gi|148361305|ref|YP_001252512.1| ribonuclease T [Legionella pneumophila str. Corby] gi|296108645|ref|YP_003620346.1| ribonuclease T [Legionella pneumophila 2300/99 Alcoy] gi|148283078|gb|ABQ57166.1| ribonuclease T [Legionella pneumophila str. Corby] gi|295650547|gb|ADG26394.1| ribonuclease T [Legionella pneumophila 2300/99 Alcoy] Length = 207 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 23/191 (12%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDY------SKTNRTFQVFLCPNGRK 54 KN+ R +V D+ET G+D + + ++E+ V LLD K + F+ L G + Sbjct: 13 KNRFRGFLPVVVDVETAGIDPQKNALLEMCIV-LLDMDEQGLLKKESSYFEHILPFPGAE 71 Query: 55 NSPEALKLHGITDEF------LKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGF 105 ++L+ + I D + + ++ + +F D + Q A + HNA FD+ F Sbjct: 72 LDQKSLEFNQI-DPYQPLRFAVDEQIALERLFKPIHDLLKKTRCQRAVLVGHNAWFDLLF 130 Query: 106 INAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 I A ++R K P DT ++A L + G+ + H A+ D+ Sbjct: 131 IKAAIKRTGIKSPFHAFTCFDTATLAGLIF--GETVLAKAVQTAGLHFDSQEAHSAIYDA 188 Query: 165 HLLSDVYIKMM 175 +D++ M+ Sbjct: 189 EKTADLFCLMI 199 >gi|116253032|ref|YP_768870.1| DNA polymerase/exonuclease [Rhizobium leguminosarum bv. viciae 3841] gi|115257680|emb|CAK08778.1| putative DNA polymerase/exonuclease [Rhizobium leguminosarum bv. viciae 3841] Length = 196 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 7/149 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + + +G + D + R + + P + S + +HGI Sbjct: 1 MKTIAIDFETA--NEQRGSACSVGLAWIED-GRVTRVEERLIRPRDMRFSGMNIAIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++D P F + EF + F + A IAHNA FD A L + + + + Sbjct: 58 PEHVEDAPEFPEVMDEFEEDF--RGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISH 154 L +A+R P + LN + + G+ H Sbjct: 115 LKMAQRIWPHFLSHRLNLIAEHLGLRFVH 143 >gi|227889650|ref|ZP_04007455.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii ATCC 33200] gi|268319793|ref|YP_003293449.1| DNA polymerase III epsilon subunit [Lactobacillus johnsonii FI9785] gi|227849793|gb|EEJ59879.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii ATCC 33200] gi|262398168|emb|CAX67182.1| DNA polymerase III epsilon subunit [Lactobacillus johnsonii FI9785] Length = 177 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 5/115 (4%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGIT E +K+ P+ + ++ + + + AHNA+FD + L R N P Sbjct: 50 IRIHGITAEDIKNAPTMAEVWPKIKKLY-QPGMLVAAHNARFDCRVMEKSLARYNI-PAP 107 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 IDTL+ ++ P N L+++ + I + H H AL DS + + I+ Sbjct: 108 HYFAIDTLATSKAFEPYLPNHKLDTVSEALNINLWHH--HNALSDSEACAGILIE 160 >gi|262067765|ref|ZP_06027377.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693] gi|291378491|gb|EFE86009.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693] Length = 191 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 25/173 (14%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLH 63 M KI+F D ET G++ + +I++ + +D K F ++ P N N +AL++ Sbjct: 1 MNKIIFIDTETGGVNPEKATLIQLSGIIRID-KKDVEKFNFYIKPFKNSEVNE-KALEVQ 58 Query: 64 G------ITDEFLKDKP---SFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQR- 112 G TD+++++K F ++ ++ D ++ + +A +N +FDV + A QR Sbjct: 59 GRTLEELKTDKYVEEKEVYKQFINLLDKYIDKYDRTDKFIVAGYNVRFDVDILKAFFQRH 118 Query: 113 --------INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI-SHRS 156 ++ LDP I L IA N L + CK +GI + +H S Sbjct: 119 GNNFLFSYLDSSMLDPLYSIRLLQIAEILPVLENNKLETWCKHFGIELKAHDS 171 >gi|259908234|ref|YP_002648590.1| exodeoxyribonuclease X [Erwinia pyrifoliae Ep1/96] gi|224963856|emb|CAX55358.1| DNA exonuclease X [Erwinia pyrifoliae Ep1/96] gi|283478165|emb|CAY74081.1| exodeoxyribonuclease X [Erwinia pyrifoliae DSM 12163] Length = 221 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V+++ N + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGLQGG---VVEVASVDVISGQILN-PMSDLISPD-RPISRQAMAVHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP+ + + ++AHNA FD L ++ D I T+++A Sbjct: 59 RGKPAIEQAIGRY-----HGSPFYVAHNASFD----RRMLPEMHGD------WICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 RR P + +L + + +S + H AL D ++ + + +++M Sbjct: 104 RRLWPGLKYTNEALRQSLQLEVSPPADLHAHRALYDCYVTAALLMRIM 151 >gi|154246978|ref|YP_001417936.1| DNA polymerase III subunit epsilon [Xanthobacter autotrophicus Py2] gi|154161063|gb|ABS68279.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter autotrophicus Py2] Length = 298 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 16/104 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-----PEALKLHG 64 +V D+ETTGLD + D IIE+ A+ Y F V G + PE + G Sbjct: 45 MVVDVETTGLDPQRDEIIEL-AMTPFSYGLDGTIFSVGDSFQGLRQPSEPILPEITAITG 103 Query: 65 ITDEFLKDK---PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 IT+E + + P+ + F+ F IAHNA FD F Sbjct: 104 ITNEMVAGQIIDPAVVATFAAPASLF-------IAHNAAFDRRF 140 >gi|300361318|ref|ZP_07057495.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus gasseri JV-V03] gi|300353937|gb|EFJ69808.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus gasseri JV-V03] Length = 177 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 5/115 (4%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGIT E +K+ P+ + ++ + + + AHNA+FD + L R N P Sbjct: 50 IRVHGITAEDVKNAPTMAEVWPKIKKLY-QPGMLVAAHNARFDCRVMEKSLARYNI-PAP 107 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 IDTL+ ++ P N L+++ + I + H H AL DS + + I+ Sbjct: 108 HYFAIDTLATSKAFEPDLPNHKLDTVSEALNINLWHH--HNALSDSEACAGILIE 160 >gi|254495198|ref|ZP_05108122.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] gi|85819550|gb|EAQ40707.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] Length = 461 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTG K +I EI ++ + D K F + P + P L GIT+ + Sbjct: 4 VIDIETTGNGFKGQKITEI-SIFVFDGKKIIDEFTSLINPE-QNIPPFITNLTGITNAMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F I + + ++ ++AHN FD I E + + D + + T+ ++ Sbjct: 62 RYAPKFHEIAKKVEEL--TRDTIFVAHNVNFDYNIIRDEFKSLGFD--FKRKKLCTVRLS 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R+ P R+ L ++C I I+ R H A D+ ++++ +++ Sbjct: 118 RKIMPGLRSYSLGNICIDENIPINGR--HRAKGDAEATTELFRRLI 161 >gi|290475494|ref|YP_003468382.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Xenorhabdus bovienii SS-2004] gi|289174815|emb|CBJ81616.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Xenorhabdus bovienii SS-2004] Length = 208 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A+ L +D + T + P G P AL G Sbjct: 12 VVIDVETGGFNAQTDALLEIAAITLKMDEEGWLMPADTLHFHIDPFEGANLDPAALAFTG 71 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF + N A +AHNA FD F+ A +R + Sbjct: 72 IDPTNPLRGAVSEYTALHAIFKMIRKGMKDNNCNRAIIVAHNASFDHNFVMAAAERSGLK 131 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT +++ + L C I H AL D+ + ++ ++ Sbjct: 132 RNPFHPFATFDTAALSGLV--LGQTILAKACITAEIPFDSNQAHSALYDTDRTALLFCEL 189 Query: 175 M 175 + Sbjct: 190 V 190 >gi|212634795|ref|YP_002311320.1| exonuclease [Shewanella piezotolerans WP3] gi|212556279|gb|ACJ28733.1| Exonuclease [Shewanella piezotolerans WP3] Length = 225 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 23/184 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV----FLCPNGRKNSPEALKLHGI 65 + D+E TGL+ + D+I+ IG V + N Q+ + + + ++ +HGI Sbjct: 43 MAIDLEMTGLNVQFDQILSIGMVPI-----QNGMLQLKDADYRLVSIEGSVGDSAAIHGI 97 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D L+ S + + W + IAH+A D+ F+ AE+ R + + ID Sbjct: 98 VDGQLETAISANE--AMHWFLEKTKGHVLIAHHAPLDLCFLKAEIFRCFGEKMTFVS-ID 154 Query: 126 TLSIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176 T+S+ R R+H + L++ RYG+ I + H A +D+ ++ + M + Sbjct: 155 TMSLERARILRQHEVIKEGSLRLDACRSRYGLPI--YAAHNAAVDALSCGELLLAQMASI 212 Query: 177 GGSQ 180 G++ Sbjct: 213 AGAE 216 >gi|238853258|ref|ZP_04643643.1| DNA polymerase III alpha chain [Lactobacillus gasseri 202-4] gi|238834142|gb|EEQ26394.1| DNA polymerase III alpha chain [Lactobacillus gasseri 202-4] Length = 177 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGIT E +K+ P+ + ++ + + + AHNA+FD + L R N P Sbjct: 50 IRVHGITAEDVKNAPTMAEVWPKIKKLY-QPGMLVAAHNARFDCRVMEKSLARYNI-PAP 107 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 IDTL+ ++ P+ N L+++ + I + H H AL DS + + I+ Sbjct: 108 HYFAIDTLATSKAFEPNLPNHKLDTVSEALDINLWHH--HNALSDSEACAGILIE 160 >gi|290963218|ref|YP_003494400.1| exonuclease [Streptomyces scabiei 87.22] gi|260652744|emb|CBG75877.1| putative exonuclease [Streptomyces scabiei 87.22] Length = 215 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 14/172 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGLD + D II +GAV + + +F + P S ++K+HG+ Sbjct: 24 CVIDLETTGLDLRRDEIISVGAVPVREGRIDLGDSFYSLVRPRC-AVSVASIKVHGLRPG 82 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P +++ + + +AH A + F++ + + ++DT + Sbjct: 83 DLDSAPDPATVGQALSPRLSGRVV--VAHAAWIERAFLSRTQSTVGWSQV--RAVVDTAA 138 Query: 129 IARRK-----HPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR H S R L L +R G+ + + H AL D+ + V++ + Sbjct: 139 LARATGCWAGHDSGREPPLELLARRLGLPVC--TPHHALGDALTTATVFLAL 188 >gi|319426754|gb|ADV54828.1| Exonuclease RNase T and DNA polymerase III [Shewanella putrefaciens 200] Length = 223 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 27/168 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + D+E TGLD D+I+ IG V + L+ ++ + Q+ R + ++ +H Sbjct: 38 MAMDLEMTGLDPLQDQILSIGLVPIEHGVIPLEGAQ-QKLVQI------RGSVGQSATIH 90 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR 122 GI D L + + W + +AH++ D F+ ++ I ++ PS Sbjct: 91 GILDNHLVQAVTIEDAMA--WFIAKTRGRVLVAHHSPLDCRFLQQDILAIYHQAVFLPS- 147 Query: 123 IIDTLSIARRK-----HPSSRNDLN-SLCK-RYGITISHRSKHGALLD 163 IDTL + +R+ H + L C+ RYG+ + S H AL D Sbjct: 148 -IDTLMLEKRRLLRGHHAIKKGSLRLGACRERYGLPVY--SAHSALTD 192 >gi|329667640|gb|AEB93588.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii DPC 6026] Length = 177 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 5/115 (4%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGIT E +K+ P+ + ++ + + + AHNA+FD + L R N P Sbjct: 50 IRIHGITAEDVKNAPTMAEVWPKIKKLY-QPGMLVAAHNARFDCRVMEKSLARYNI-PAP 107 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 IDTL+ ++ P N L+++ + I + H H AL DS + + I+ Sbjct: 108 HYFAIDTLATSKAFEPYLPNHKLDTVSEALNINLWHH--HNALSDSEACAGILIE 160 >gi|227513634|ref|ZP_03943683.1| DNA-directed DNA polymerase III [Lactobacillus buchneri ATCC 11577] gi|227083150|gb|EEI18462.1| DNA-directed DNA polymerase III [Lactobacillus buchneri ATCC 11577] Length = 177 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + +HGI + + + P+F ++ F N +AHNA FD + L+R D L Sbjct: 50 INVHGIHKQDVANAPTFPELWDHIAPLFTA-NKLVVAHNASFDNSVLKRTLERY--DLLL 106 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + +DTL +++ +P N LN++C I + H H AL DS +++ + Sbjct: 107 PHFLTLDTLKTSKQFYPQMVNHKLNTVCDELHIELEHH--HNALDDSVACANILL 159 >gi|311108015|ref|YP_003980868.1| exonuclease family protein [Achromobacter xylosoxidans A8] gi|310762704|gb|ADP18153.1| exonuclease family protein [Achromobacter xylosoxidans A8] Length = 207 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 10/151 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITD- 67 IV D+ETTGL + I+E AV + + R + + R P + +L GIT Sbjct: 40 IVADLETTGLSTATCEILEFAAVRVGEAGALEREYTQVV--RTRGPVPSFISRLTGITQA 97 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +D FS F DF + + HNA FD F+ A + + + TL Sbjct: 98 EVDRDGVPVVQAFSSFLDFVEDLPVFF--HNASFDRRFLGAAADQTGLPFANSTHC--TL 153 Query: 128 SIARRKHPS-SRNDLNSLCKRYGIT-ISHRS 156 ++ARR P + L L + G + +HR+ Sbjct: 154 ALARRAWPELPSHKLEILARHVGASDPTHRA 184 >gi|113969858|ref|YP_733651.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4] gi|113884542|gb|ABI38594.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4] Length = 228 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+E TGLD ND+I+ IG V + + + + Q L + + ++ +HGI D Sbjct: 43 MAMDLEMTGLDPLNDQILSIGLVPIENGTIPLGSAQQKLV-QIQGSVGQSATIHGILDNH 101 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128 L + S + W + +AH++ D F+ ++ I ++ + P+ IDTL Sbjct: 102 LTEAVSIEEAMA--WFVSQTRGHILVAHHSPLDCRFLQQDILSIYHQAIVIPA--IDTLL 157 Query: 129 IAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGS 179 + + R+H + L + +RYG+ I H AL D+ ++ + + +GG+ Sbjct: 158 LEKHRLLREHSVLKEGSLRLGACRERYGLPI--YGAHSALTDALACGELLLAQVASMGGA 215 Query: 180 Q 180 + Sbjct: 216 E 216 >gi|229138336|ref|ZP_04266930.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST26] gi|228645101|gb|EEL01339.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST26] Length = 99 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 6/100 (6%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVED-GEILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 + +K P F + + Q A ++AHN FD F Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNF 99 >gi|183599959|ref|ZP_02961452.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827] gi|188022234|gb|EDU60274.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827] Length = 234 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 15/167 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ETTGLD + DRI+ IG V + D ++ Q + + E ++ IT E L Sbjct: 55 IDLETTGLDPEKDRILSIGMVTIADSKILLKSAQHYYVNDNEPVKAETAVINHITPEQLS 114 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D S + F +E + I AH + + F++ L I + PL DTL+I Sbjct: 115 DGVSLPHAIA---SFLHEAKGKCILAHGSAIEHAFLSKAL-NIKELPL---LWFDTLNIE 167 Query: 131 RR--KHPS-SRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + H + +RND L++L RY + H AL D+ +++++ Sbjct: 168 KTLLSHKNINRNDFSLSALRSRY--QLPDYDAHNALSDAIATAELFL 212 >gi|89890222|ref|ZP_01201732.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] gi|89517137|gb|EAS19794.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] Length = 466 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 19/154 (12%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL------KLHG 64 V DIETTG +R+ EI V + + ++ + PE L L G Sbjct: 10 VVDIETTGNRMTGNRMTEICIVRMRGDTILDKYSSLI--------DPEVLIPDYITTLTG 61 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + + P F+ + E +F ++ ++AHN FD + E +R++ D + + Sbjct: 62 IDNAMVASAPVFADVAEEILNF--TKDYIFVAHNVNFDYNVLRNEFKRLHHDF--KRKKL 117 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSK 157 T+ ++R P R+ L LC GI + +R + Sbjct: 118 CTVRLSRELIPGMRSYSLGKLCDDIGIPLINRHR 151 >gi|213962688|ref|ZP_03390949.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena Capno] gi|213954683|gb|EEB66004.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena Capno] Length = 442 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 7/148 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI + ++ T++ F + P R KL GI ++ L Sbjct: 4 ILDIETTGGKYDEEGITEIAIYQFDGHTITDQ-FISLINPE-RPIQDYVTKLTGINNKML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P F I + + + HNA FD + E +R+ + + + + T+ ++ Sbjct: 62 RNAPKFYEIAKRIVEI--TEGCIIVGHNAAFDYRILQTEFRRLGYEYIKTT--LCTVELS 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157 ++ P + L L + GI +S R + Sbjct: 118 QQLIPDKESYSLGKLVRSLGIPMSERHR 145 >gi|163845121|ref|YP_001622776.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445] gi|163675844|gb|ABY39954.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 332 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ + E ++ G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEIARITG 132 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE +K + +I + D + IAHNA FD F+ Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171 >gi|121603395|ref|YP_980724.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans CJ2] gi|120592364|gb|ABM35803.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas naphthalenivorans CJ2] Length = 220 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 3/99 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+++ D II IGAV + D T+ ++ + P R+ S E++++H + ++ Sbjct: 43 VALDCETTGLNTRTDDIIAIGAVRIRDNRIMTSERLELLVRPEKRRLSAESVRVHRLREQ 102 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 + S + F + + + +FD+ IN Sbjct: 103 DVAQGISADEAMMKLMYFIGSRPL--VGYYLEFDLAMIN 139 >gi|239832702|ref|ZP_04681031.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG 3301] gi|239824969|gb|EEQ96537.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG 3301] Length = 353 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ R + ++ G Sbjct: 95 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDICATFGALQQPS-RPIPADITRITG 153 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE ++ + +I E D + IAHNA FD F+ Sbjct: 154 ITDEMVRGQ----TIPREKLDALIAEADIIIAHNAGFDRPFLE 192 >gi|146300607|ref|YP_001195198.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] gi|146155025|gb|ABQ05879.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium johnsoniae UW101] Length = 198 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 16/171 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V ET+GL+ D I+ +GA ++D S F+ L + L+ +G+++E Sbjct: 31 VVLSTETSGLNPNKDVILSLGAFSVIDDSIIIKENFEAVLL------QYKFLEDNGLSNE 84 Query: 69 FLKD----KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI- 123 F+ + K + F +F NA + H+ FD+ +NA L+R++ L + Sbjct: 85 FIIESKMTKMPEAEALEAFINFLG--NAVLVGHHINFDIEMLNAALERLDCGRLKNEALD 142 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ID + + LN LC+ Y I S R+ D++ + +++K+ Sbjct: 143 IDVMYRKLTDINDKQFSLNDLCEIYKIPKSDRNSSAE--DAYKIGLLFLKL 191 >gi|262194304|ref|YP_003265513.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077651|gb|ACY13620.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 15/154 (9%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNS-PEALK 61 M+ +VF D ETTGLD + I+EI A+ + + +T R + + P +++ PEAL+ Sbjct: 1 MQPLVFIDCETTGLDPERHEILEIAAIRV--HPQTLDEERELVLRVRPERLEDADPEALE 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LD 119 ++G D S +E + A HN FD F+ A + P LD Sbjct: 59 VNGYRRRVWADAVSLGDAMAELAPML--EGAVLAGHNVAFDRRFLEAAWDYVGHRPENLD 116 Query: 120 PSRIIDTLSIARRKHPSSRND---LNSLCKRYGI 150 +DT ++A + D L +C G+ Sbjct: 117 -HHALDTAALAFPLLMAGEIDSLSLTPVCAHLGV 149 >gi|225686761|ref|YP_002734733.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457] gi|256262103|ref|ZP_05464635.1| exonuclease [Brucella melitensis bv. 2 str. 63/9] gi|225642866|gb|ACO02779.1| Exonuclease RNase T and DNA polymerase III [Brucella melitensis ATCC 23457] gi|263091793|gb|EEZ16124.1| exonuclease [Brucella melitensis bv. 2 str. 63/9] gi|326411169|gb|ADZ68233.1| DNA polymerase III subunit epsilon [Brucella melitensis M28] gi|326554460|gb|ADZ89099.1| DNA polymerase III subunit epsilon [Brucella melitensis M5-90] Length = 332 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ + E ++ G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE +K + +I + D + IAHNA FD F+ Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171 >gi|24374384|ref|NP_718427.1| exonuclease [Shewanella oneidensis MR-1] gi|24348949|gb|AAN55871.1|AE015724_4 exonuclease [Shewanella oneidensis MR-1] Length = 181 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 30/190 (15%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 D+E TGLD D+I+ IG V + L +++ + Q+ R + ++ +HGI Sbjct: 1 MDLEMTGLDPFKDQILSIGLVPIENGAIPLSHAQ-QKLVQI------RGSVGQSAIIHGI 53 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRII 124 D L S + W + +AH++ D F+ ++ I ++ L P+ I Sbjct: 54 LDNHLTQAVSIEEAMA--WFMEQTRGRVLVAHHSPLDCRFLQQDILTIYHQAVLLPA--I 109 Query: 125 DTLSIAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKM 174 DTL + + R+H + L + +RYG+ I H AL D+ +++ + Sbjct: 110 DTLVLEKQRLLREHSVLKEGSLRLGACRERYGLPI--YGAHSALTDALACAELLLAQVAA 167 Query: 175 MVGGSQINFG 184 M GG+ I+ G Sbjct: 168 MGGGADISVG 177 >gi|305667231|ref|YP_003863518.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88708165|gb|EAR00403.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170] Length = 454 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 7/148 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI A+ D + F + P + P + L GI ++ L Sbjct: 4 ILDIETTGGKYNEEGITEI-AIHKFDGHQVVDKFISLVNPE-KDIQPFVVNLTGINNKML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + + +++ +AHNA+FD + E +R+ + + + T+ ++ Sbjct: 62 RTAPKFHEVAKRIVEI--TEDSVLVAHNAQFDYRILRTEFRRLGYNF--ERKTLCTVDLS 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157 + P + + L L + GI +S R + Sbjct: 118 KYLLPDAESYSLGKLVRSLGIPMSDRHR 145 >gi|262402358|ref|ZP_06078919.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] gi|262351140|gb|EEZ00273.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] Length = 233 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 18/175 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL+++ D I+ IG V + + +L R +++ +HGIT Sbjct: 45 VALDFETTGLNAQQDDILSIGLVPFNTQRIALKQARYWLVKPSRPLEEDSVVIHGITHTE 104 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LK +FSE +D + +AH + F+ ++ ++ ++ IIDTL I Sbjct: 105 LKHAQEPEVVFSELFDALRGKIV--VAHFRHIEREFLRQTTLKLWEEAVE-FPIIDTLEI 161 Query: 130 ARRKHPSSRNDLNSLCK-------------RYGITISHRSKHGALLDSHLLSDVY 171 + R+ L + RYG+ S H AL D+ ++++ Sbjct: 162 ELSVQNTQRSLWQRLLRSPIPSVRLGQSRLRYGLPAY--SPHQALTDAIATAELF 214 >gi|163814599|ref|ZP_02205988.1| hypothetical protein COPEUT_00750 [Coprococcus eutactus ATCC 27759] gi|158450234|gb|EDP27229.1| hypothetical protein COPEUT_00750 [Coprococcus eutactus ATCC 27759] Length = 227 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 8/85 (9%) Query: 7 MRKIVFDIETTGLDSKNDR--------IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 MR + D E +DS++ + IIEIGAV+L D +F+ ++ P + Sbjct: 9 MRYVFVDFEMNLIDSEHKQEKKICKSEIIEIGAVKLDDEYNEIDSFKSYVKPAYGNMASR 68 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEF 83 +KL GITDE L+ PS+ F Sbjct: 69 IIKLTGITDEMLETAPSYEDAVGRF 93 >gi|325955054|ref|YP_004238714.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922] gi|323437672|gb|ADX68136.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922] Length = 453 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 7/148 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE TG + II+I A+ D T F + P RK P KL ITD+ + Sbjct: 4 ILDIEATGGKVGEESIIDI-AIFRYDGQTTVDQFISLVNPM-RKIDPFVQKLTNITDKMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P F I + ++ + HN KFD + E +++ D IDT A Sbjct: 62 LTAPKFHEIAKRIVEI--TEDCILVGHNVKFDYRMLRQEFKKLGYD--YEKDWIDTFEFA 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157 ++ P+ + L L GI I+ R + Sbjct: 118 QKLIPNMESYSLGKLTNALGIPITDRHR 145 >gi|314976530|gb|EFT20625.1| exonuclease [Propionibacterium acnes HL045PA1] Length = 169 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 8/100 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETT LD RIIEI ++D + + P G EA +H I+ + Sbjct: 17 VILDTETTDLDG---RIIEI---SIIDAATGTVLMNQLINPQGAPIYAEARTVHHISPDD 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 L P+F+ + D ++ +A NA FD G I AE Sbjct: 71 LATAPTFTQVRPRLEDVVADRVV--MAWNAPFDQGRIEAE 108 >gi|256058832|ref|ZP_05449048.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33] gi|261322770|ref|ZP_05961967.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33] gi|261298750|gb|EEY02247.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33] Length = 332 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ + E ++ G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE +K + +I + D + IAHNA FD F+ Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171 >gi|254700203|ref|ZP_05162031.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513] gi|261750696|ref|ZP_05994405.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5 str. 513] gi|261740449|gb|EEY28375.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5 str. 513] Length = 332 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ + E ++ G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE +K + +I + D + IAHNA FD F+ Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171 >gi|255658850|ref|ZP_05404259.1| putative exonuclease [Mitsuokella multacida DSM 20544] gi|260849253|gb|EEX69260.1| putative exonuclease [Mitsuokella multacida DSM 20544] Length = 219 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 8/93 (8%) Query: 7 MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M+ +V D+E + + N+ +IEIGAV L + + FQ ++ P Sbjct: 1 MKHVVVDLEMNPVSREFREVRRKLNEEVIEIGAVRLDENFQQEAEFQCYVKPEYGPIKKH 60 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQN 91 L GIT + DK ++++ F +F D+ E+ Sbjct: 61 ITSLTGITQAMVADKKTYAACFQDFVDWVGEEE 93 >gi|91070260|gb|ABE11179.1| putative DNA polymerase III, epsilon subunit [uncultured Prochlorococcus marinus clone HF10-11H7] Length = 259 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 22/201 (10%) Query: 3 RKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEAL 60 + K+ KI + D ETTGLD D +IEIG + L D S QV FL P N+ EA Sbjct: 31 KNKKIEKILILDTETTGLDENKDEVIEIGCI-LFDVSFKCVLSQVSFLFP---VNNNEAE 86 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLD 119 ++GI+ E + F + + +AHN +FD F L ++NK + Sbjct: 87 YVNGISAEVTNISQPWEDGLHFFLKLVDSSDFI-VAHNVEFDKKWFGKGRLPKLNKKWIC 145 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------ 173 ++ ++ + +K +R + L + I + + H AL D +S+V+ K Sbjct: 146 S---LEDINWSFQKSLKTRPSVTDLALSFSIPVWNL--HRALSDCFYISEVFKKCDNLEE 200 Query: 174 MMVGGSQINFGFK---TNEDR 191 +++ ++ F +K + EDR Sbjct: 201 LLLKATEPRFLYKALVSYEDR 221 >gi|23500730|ref|NP_700170.1| DNA polymerase III subunit epsilon [Brucella suis 1330] gi|161621054|ref|YP_001594940.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365] gi|254703325|ref|ZP_05165153.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686] gi|260567746|ref|ZP_05838215.1| exonuclease [Brucella suis bv. 4 str. 40] gi|261753952|ref|ZP_05997661.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3 str. 686] gi|23464383|gb|AAN34175.1| exonuclease, putative [Brucella suis 1330] gi|161337865|gb|ABX64169.1| Exonuclease RNase T and DNA polymerase III [Brucella canis ATCC 23365] gi|260154411|gb|EEW89492.1| exonuclease [Brucella suis bv. 4 str. 40] gi|261743705|gb|EEY31631.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3 str. 686] Length = 332 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ + E ++ G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE +K + +I + D + IAHNA FD F+ Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171 >gi|256015766|ref|YP_003105775.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915] gi|255998426|gb|ACU50113.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915] Length = 332 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ + E ++ G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE +K + +I + D + IAHNA FD F+ Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171 >gi|320087113|emb|CBY96881.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 235 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%) Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKD 116 EA ++HGITDE ++D PS+ + + + + W+A+NAKFD + A R++ D Sbjct: 108 EATEIHGITDEMVEDAPSWKEMLPQVLELISHG---WVAYNAKFDARMLEQASGSRVDPD 164 >gi|225629458|ref|ZP_03787491.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo] gi|225615954|gb|EEH13003.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo] Length = 379 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ + E ++ G Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 179 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE +K + +I + D + IAHNA FD F+ Sbjct: 180 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 218 >gi|126342108|ref|XP_001377513.1| PREDICTED: similar to 3-5 exonuclease TREX2 [Monodelphis domestica] Length = 241 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 40/199 (20%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS------KTNRTFQ---------VFLCPNGRK 54 + D+E TGL + + I EI + +S + T Q + +CP + Sbjct: 11 VFLDLEATGLPNAHPEIAEISLFAIHRFSLEHPERDESGTLQLPRVLDKLTLCMCPE-QN 69 Query: 55 NSPEALKLHGITDEFLKD--KPSF-SSIFSEFWDFFNEQNAE--WIAHNA-KFDVGFINA 108 +P+A ++ G++++ L D K F ++ W+F Q + +AHN +D + Sbjct: 70 FTPKASEITGLSNQNLADNHKAGFDGAVIRALWEFLKRQKSPICLVAHNGFDYDFPLLRT 129 Query: 109 ELQRINKDPLDPSRIIDTLSIAR----RKHPSSRN-------DLNSLCKRYGITISHRSK 157 ELQR+ D + +DTL R H S+R L +L +RY ++ Sbjct: 130 ELQRLGADLPGGTVCLDTLPALRGLDKAHHHSTRASHGKKSYSLGNLYRRY-FDDEPQAA 188 Query: 158 HGALLDSHLLSDVYIKMMV 176 H A DVY +MV Sbjct: 189 HSA------EGDVYALVMV 201 >gi|294853961|ref|ZP_06794633.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026] gi|294819616|gb|EFG36616.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026] Length = 332 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ + E ++ G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE +K + +I + D + IAHNA FD F+ Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171 >gi|257454452|ref|ZP_05619714.1| ribonuclease T [Enhydrobacter aerosaccus SK60] gi|257448218|gb|EEV23199.1| ribonuclease T [Enhydrobacter aerosaccus SK60] Length = 242 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 49/237 (20%), Positives = 89/237 (37%), Gaps = 31/237 (13%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL--------DYSKTNRTFQVFLC 49 M N+ R +V D+ET G + K D ++EI + +L N + F Sbjct: 8 MTIANRFRNYLPVVVDVETAGFNPKTDALLEIACIPILMDDTGLFYPGEAVNAHIEPF-- 65 Query: 50 PNGRKNSPEALKLHGITDE-------FLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNA 99 G AL+ GI +K + IF + HNA Sbjct: 66 -EGANLEARALQFTGINPHSPMRKAIAEDEKTAIRRIFKYLKTVRQSTQCTKCILVGHNA 124 Query: 100 KFDVGFINAELQRI---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156 FD+ F+NA ++R N+ ++DT++++ + L CK G+ Sbjct: 125 HFDLSFLNALIERTNSKNQSQFHQFSVLDTVTLSALAF--GQTVLARACKLAGLEFDGNE 182 Query: 157 KHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE--DRFFKEEKKTVPNISLLKRDKP 211 H AL D+ ++++ ++ + ++E D + E + + L+ D P Sbjct: 183 AHSALYDTQKTAELFCYILNNYPMLTPNLASDEAKDEEYDEPQDSDDEAILVPSDDP 239 >gi|237817379|ref|ZP_04596371.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A] gi|237788192|gb|EEP62408.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A] Length = 379 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ + E ++ G Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 179 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE +K + +I + D + IAHNA FD F+ Sbjct: 180 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 218 >gi|62317837|ref|YP_223690.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str. 9-941] gi|83269816|ref|YP_419107.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar Abortus 2308] gi|148558112|ref|YP_001257920.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840] gi|189023090|ref|YP_001932831.1| DNA polymerase III subunit epsilon [Brucella abortus S19] gi|254690675|ref|ZP_05153929.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str. 870] gi|254696020|ref|ZP_05157848.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str. Tulya] gi|254699129|ref|ZP_05160957.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str. 86/8/59] gi|254705536|ref|ZP_05167364.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M163/99/10] gi|254710765|ref|ZP_05172576.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94] gi|254732573|ref|ZP_05191151.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str. 292] gi|256029148|ref|ZP_05442762.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M292/94/1] gi|256043877|ref|ZP_05446797.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. Rev.1] gi|256111058|ref|ZP_05452120.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] gi|256157340|ref|ZP_05455258.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1] gi|256253680|ref|ZP_05459216.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94] gi|256255857|ref|ZP_05461393.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str. C68] gi|260167759|ref|ZP_05754570.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99] gi|260545071|ref|ZP_05820892.1| exonuclease [Brucella abortus NCTC 8038] gi|260565052|ref|ZP_05835537.1| exonuclease [Brucella melitensis bv. 1 str. 16M] gi|260756251|ref|ZP_05868599.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6 str. 870] gi|260760381|ref|ZP_05872729.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4 str. 292] gi|260763621|ref|ZP_05875953.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59] gi|260882073|ref|ZP_05893687.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9 str. C68] gi|261216447|ref|ZP_05930728.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3 str. Tulya] gi|261220817|ref|ZP_05935098.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94] gi|261312940|ref|ZP_05952137.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis M163/99/10] gi|261318335|ref|ZP_05957532.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis B2/94] gi|261757195|ref|ZP_06000904.1| exonuclease [Brucella sp. F5/99] gi|265986133|ref|ZP_06098690.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis M292/94/1] gi|265990297|ref|ZP_06102854.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1] gi|265992595|ref|ZP_06105152.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv. 3 str. Ether] gi|265995827|ref|ZP_06108384.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M490/95/1] gi|297249226|ref|ZP_06932927.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str. B3196] gi|62198030|gb|AAX76329.1| hypothetical exonuclease [Brucella abortus bv. 1 str. 9-941] gi|82940090|emb|CAJ13133.1| Exonuclease [Brucella melitensis biovar Abortus 2308] gi|148369397|gb|ABQ62269.1| putative exonuclease [Brucella ovis ATCC 25840] gi|189021664|gb|ACD74385.1| Exonuclease [Brucella abortus S19] gi|260098342|gb|EEW82216.1| exonuclease [Brucella abortus NCTC 8038] gi|260152695|gb|EEW87788.1| exonuclease [Brucella melitensis bv. 1 str. 16M] gi|260670699|gb|EEX57639.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4 str. 292] gi|260674042|gb|EEX60863.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59] gi|260676359|gb|EEX63180.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6 str. 870] gi|260871601|gb|EEX78670.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9 str. C68] gi|260918054|gb|EEX84915.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3 str. Tulya] gi|260919401|gb|EEX86054.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94] gi|261297558|gb|EEY01055.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis B2/94] gi|261301966|gb|EEY05463.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis M163/99/10] gi|261737179|gb|EEY25175.1| exonuclease [Brucella sp. F5/99] gi|262550124|gb|EEZ06285.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M490/95/1] gi|262763465|gb|EEZ09497.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv. 3 str. Ether] gi|263000966|gb|EEZ13656.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1] gi|264658330|gb|EEZ28591.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis M292/94/1] gi|297173095|gb|EFH32459.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str. B3196] Length = 332 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ + E ++ G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE +K + +I + D + IAHNA FD F+ Sbjct: 133 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 171 >gi|88856168|ref|ZP_01130828.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] gi|88814487|gb|EAR24349.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] Length = 232 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 8/156 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG+D + RI+ + L+D S + +L G + A +HGI+ E + Sbjct: 10 FDLETTGVDVETSRIVS-ACIALVDASGVVISRWDWLADPGVEIPEGAAAIHGISTERAR 68 Query: 72 DKPSFSSI-FSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDT 126 + ++I +E A + +NA +D+ ++ E +R + D L +P +ID Sbjct: 69 AEGRDAAIVVAEIVQTLKVTCALGIPLVVYNAPYDLSLLDRECRRYSIDGLREPYIVIDP 128 Query: 127 LSI--ARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 L I A ++ + L YG+ + G+ Sbjct: 129 LVIDKAVDRYRRGKRTLEVTSGLYGVALDDAHDAGS 164 >gi|114047088|ref|YP_737638.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7] gi|113888530|gb|ABI42581.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7] Length = 228 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+E TGLD ND+I+ IG V + + + + Q L + + ++ +HGI D Sbjct: 43 MAMDLEMTGLDPLNDQILSIGLVPIENGTIPLGSAQQKLV-QIQGSVGQSATIHGILDNH 101 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128 L + S + W + +AH++ D F+ ++ I ++ + P+ IDTL Sbjct: 102 LTEAVSIEEAMA--WFVSQTRGHILVAHHSPLDCRFLQQDILSIYHQVVVIPA--IDTLL 157 Query: 129 IAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGS 179 + + R+H + L + +RYG+ I H AL D+ ++ + + +GG+ Sbjct: 158 LEKHRLLREHSVLKEGSLRLGACRERYGLPI--YGAHSALTDALACGELLLAQVASMGGA 215 Query: 180 Q 180 + Sbjct: 216 E 216 >gi|284040773|ref|YP_003390703.1| exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM 74] gi|283820066|gb|ADB41904.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM 74] Length = 270 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 12/129 (9%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 FD+ETTG++ DRII+I ++ L +K R G E+ +HGI D Sbjct: 14 FDLETTGINIAKDRIIDICIIKALPGGEVITKNQRVHP------GMPIPLESSLIHGIYD 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126 + ++D P F ++ F + + N +FDV + E R N D + R++D Sbjct: 68 DDVQDAPPFKTVARTLAQFLDGCDLAGFNCN-RFDVPLLVEEFLRANVDFDMKNRRLVDA 126 Query: 127 LSIARRKHP 135 I P Sbjct: 127 QRIFHLMEP 135 >gi|42568689|ref|NP_200947.3| exonuclease family protein [Arabidopsis thaliana] gi|111074224|gb|ABH04485.1| At5g61390 [Arabidopsis thaliana] gi|332010078|gb|AED97461.1| exonuclease-like protein [Arabidopsis thaliana] Length = 487 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 22/159 (13%) Query: 12 FDIETTGL--DSKNDRIIEIGA--------VELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 FD+ETT + I+E G+ VEL +YS R + L +P ++K Sbjct: 19 FDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLI------TPRSVK 72 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120 +GI E ++ +F+ I +D + + W HN KFD I I +DP +P Sbjct: 73 CNGIKREDVESALTFADIADTVYDILHGRI--WAGHNILKFDCPRIREAFAEIGRDPPEP 130 Query: 121 SRIIDTLSIARRKHPSSRNDLN--SLCKRYGI-TISHRS 156 ID+L++ ++ D+ +L +G+ +HRS Sbjct: 131 KGTIDSLALLTQRFGRRAGDMKMATLATYFGLGNQTHRS 169 >gi|86148888|ref|ZP_01067137.1| ribonuclease T [Vibrio sp. MED222] gi|85833322|gb|EAQ51531.1| ribonuclease T [Vibrio sp. MED222] Length = 119 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Query: 95 IAHNAKFDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152 +AHNA FD+ F+NA +R + + P P DT +++ + + L C+ G+ Sbjct: 24 VAHNATFDLNFVNAASERCKLKRVPFHPFATFDTAALSGLAY--GQTVLAKACRTAGMEF 81 Query: 153 SHRSKHGALLDSHLLSDVYIKMM 175 ++ H AL D+ ++++ ++ Sbjct: 82 DNKEAHSALYDTQKTTELFCGIV 104 >gi|330995701|ref|ZP_08319599.1| exonuclease [Paraprevotella xylaniphila YIT 11841] gi|329574760|gb|EGG56321.1| exonuclease [Paraprevotella xylaniphila YIT 11841] Length = 256 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 20/173 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64 + FD+ETTG++ NDRI+E+ +++ + SK+ R N + PE + +HG Sbjct: 10 VFFDLETTGINITNDRIVELCYIKVYPNGNEESKSMRI-------NPEMHIPESSSAIHG 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSR 122 I DE + D P+F + + + + ++ N+ +FDV + E R D + + Sbjct: 63 IYDEDVADCPTFKQVAKDLANTI--KGCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRK 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ID +I H R L++ K Y + H AL D+ +V + + Sbjct: 121 FIDVQNIY---HKLERRTLSAAYKFY-CGKDLENAHSALADTRATYEVLMAQL 169 >gi|326335188|ref|ZP_08201385.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692718|gb|EGD34660.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 273 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 10/116 (8%) Query: 5 NKMRKIVF-DIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA-LK 61 N R I F D+ETTG D DRI+EI +++ + S+ ++T+ V N P A Sbjct: 20 NLTRPICFFDLETTGTDVSKDRIVEISILKVFPNGSRESKTWLV----NPTIPIPAASTD 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 +HGI+D+ + P+F + + + ++++ +N+ +FD+ + EL R D Sbjct: 76 IHGISDKMVAQAPTFKELAKQIHNLI--KDSDLAGYNSDRFDIPLLAEELLRAGVD 129 >gi|311111764|ref|YP_003982986.1| DNA polymerase III subunit epsilon [Rothia dentocariosa ATCC 17931] gi|310943258|gb|ADP39552.1| DNA polymerase III subunit epsilon [Rothia dentocariosa ATCC 17931] Length = 230 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 21/174 (12%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTG+D RI+ ++ LL+ + + +L G + A +HGIT E Sbjct: 8 RATFDLETTGVDVTTARIV-TASLLLLNPDGSVQRAGEWLANPGIEIPEGAASVHGITTE 66 Query: 69 FLKD--KPS-------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDP 117 + + +P+ +I S F D IA NA +D ++ E+ R N Sbjct: 67 YARSHGQPAQQVIWEVAGAIGSLFLDGIPV-----IAFNAAYDFSVLHHEMLRYNIAHGE 121 Query: 118 LDPSRIIDTLSIARRKHPSSRND--LNSLCKRYGITI--SHRSKHGALLDSHLL 167 L I+D I + P R + L +L + + + +H SK AL LL Sbjct: 122 LPAGHILDPYVIHKHVIPRKRGNRKLETLTAEHDVVLENAHTSKADALAAERLL 175 >gi|256377108|ref|YP_003100768.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] gi|255921411|gb|ACU36922.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] Length = 372 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 13/169 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D E T R+IEI V + + P G + +P A + HGIT + Sbjct: 93 AVVLDTELTDF---TGRVIEIAVVA----TDGATLLTSLVDPEGAQINPYAQRAHGITAQ 145 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+ ++ + + IA NA FD+ + AE + + D P + Sbjct: 146 MLTGAPTLEQLWPKLDHVLRGKRV--IAWNAPFDLTRLRAEHRHLFGDADLPDWLTGPWL 203 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMV 176 A RKH + D N+ + G +HR + G + L+ + +IK M Sbjct: 204 CAMRKHAAWVGDRNT---KGGGFRNHRLEGGHRAEGDCLAALAWIKRMA 249 >gi|329116348|ref|ZP_08245065.1| exonuclease DnaQ family/helicase DinG family [Streptococcus parauberis NCFD 2020] gi|326906753|gb|EGE53667.1| exonuclease DnaQ family/helicase DinG family [Streptococcus parauberis NCFD 2020] Length = 834 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 10/165 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M ++ + V D+E T + +II++G V +++ K T+Q + P+ + L Sbjct: 15 MTKEKNPKYAVIDLEATSAGTAA-KIIQVGIV-IVEGGKITNTYQTDVNPHEDLSDHIKL 72 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GI+D+ L P FS I +D ++ ++AHN KFD + AE L Sbjct: 73 -LTGISDQQLASAPEFSQIAGTIFDLI--KDCIFVAHNVKFDANLL-AEALFFEGFELRT 128 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 R +DT+ +A+ P + +L L + +S H A+ D+ Sbjct: 129 PR-VDTVELAQVFFPHLEKYNLTYLSTELNLELS--DAHTAIADA 170 >gi|293190188|ref|ZP_06608684.1| putative DNA polymerase III epsilon subunit [Actinomyces odontolyticus F0309] gi|292821004|gb|EFF79957.1| putative DNA polymerase III epsilon subunit [Actinomyces odontolyticus F0309] Length = 250 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 19/182 (10%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQV--FLCPNGRKNSPEALKLHGI 65 FD ETTG+ + DR++ V +D S + QV +L G + +A +HGI Sbjct: 11 FDTETTGVRALKDRLVTAALVLRIDGASYRSGVSAPDQVATWLTDPGVEIPEQATAVHGI 70 Query: 66 TDEFL-KDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD-- 119 T E +D + E E + +A NA +D+ +N EL+R + Sbjct: 71 TTEQARRDGRPIEEVLHELAGSIVEHWLRGYPVVAFNATYDITLVNQELRRHRLGSFEER 130 Query: 120 ----PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P I+D L + R+ + + L + YG ++ H A +D + DV Sbjct: 131 LEGAPMLIVDPLVLDRKLDRFRKGKKTLTEMAPVYG-AVASPDAHTAEVDVAMTLDVLAG 189 Query: 174 MM 175 M+ Sbjct: 190 MV 191 >gi|87118535|ref|ZP_01074434.1| exonuclease [Marinomonas sp. MED121] gi|86166169|gb|EAQ67435.1| exonuclease [Marinomonas sp. MED121] Length = 230 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 19/187 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGLD+ DR+I +G V + + + + + L NG + + + +H ITD+ Sbjct: 39 LVLDMETTGLDATKDRVISLGWVLIKNGAIKLSSARHILLDNGPVDE-KTVAIHMITDQD 97 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + S+ + + H+A + F+ Q +PL ++DTL++ Sbjct: 98 ISELGRNPSVAMRYLRQLLLDKV-LVVHHAPIEQAFLEKLWQAHKLNPL-TQVMLDTLAM 155 Query: 130 AR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 R RK +D L KRYG + H AL D+ +++ + +Q+N Sbjct: 156 ERDTQMRKQYMLTSDAFRLGECRKRYG--LPDYQGHDALGDAQATAELLL------AQLN 207 Query: 183 F-GFKTN 188 G TN Sbjct: 208 HAGLDTN 214 >gi|326496743|dbj|BAJ98398.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 485 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 8/114 (7%) Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRIN 114 S +++ +GIT + + P F + + +D + + W HN +FDV I I Sbjct: 77 SAASMRCNGITRDAVAAAPCFRDVADKAYDLLHGR--VWAGHNIVRFDVPRIREAFIEIG 134 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLN--SLCKRYGITISHRSKHGALLDSHL 166 + P +P +IDTL + ++ D+ SL +G+ R KH +L D + Sbjct: 135 RPPPEPKGMIDTLPLLTQRFGRRAGDMKMASLANYFGL---GRQKHRSLDDVRM 185 >gi|148980340|ref|ZP_01816006.1| DNA polymerase III, epsilon subunit [Vibrionales bacterium SWAT-3] gi|145961282|gb|EDK26593.1| DNA polymerase III, epsilon subunit [Vibrionales bacterium SWAT-3] Length = 238 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 20/166 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 IV D+ETTGLDS+ D I+ +G V++ +D + ++L + + N+ A+ H I Sbjct: 52 IVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAK---HIYLNNDSQINAETAVINH-I 107 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRII 124 T + L++ +SI FF + I AH + FI+ L R P + Sbjct: 108 TPQMLEEG---ASIHDAMLTFFEAAKGKIIVAHACVVEEKFISQYLLRCYGLRQLPLLWL 164 Query: 125 DTLSIARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDS 164 DTL I + + N L +RYG + + H AL D+ Sbjct: 165 DTLCIEKSMEKAISNHEEVDLTLAGTRERYG--LPEYNSHNALADA 208 >gi|121582521|ref|YP_974053.1| exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42] gi|120608579|gb|ABM44318.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42] Length = 302 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 6/100 (6%) Query: 8 RKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D ETTGL D ++E+ V+ N + P+ PEA +HGIT Sbjct: 131 RTVYMDTETTGLYGGCGDELLELALVD----DAGNVLLDSLVKPDRHTEWPEAQAIHGIT 186 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 + + PS S+ E + +NA FD+ F+ Sbjct: 187 PADVMNAPSLESLLPRLLAVI-EDAGTLVIYNAGFDLAFL 225 >gi|23098512|ref|NP_691978.1| hypothetical protein OB1057 [Oceanobacillus iheyensis HTE831] gi|22776738|dbj|BAC13013.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 195 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 7/116 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT+E +++ P+F+ ++ + ++ IAHNA FD+ + L + + P Sbjct: 53 IHGITEEQVQEAPTFAELWPTLSAYL--EDTILIAHNASFDMSVLRQSLNKYDI-PCPNY 109 Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + T+ I+R P N L+++ +GI ++H H A+ D+ + +++ + Sbjct: 110 TSLCTVKISRLIWPQLENHKLHTVANHHGIALNH---HHAMDDARASAKIFLASLA 162 >gi|71276282|ref|ZP_00652560.1| Ribonuclease T [Xylella fastidiosa Dixon] gi|71898489|ref|ZP_00680661.1| Ribonuclease T [Xylella fastidiosa Ann-1] gi|182681822|ref|YP_001829982.1| ribonuclease T [Xylella fastidiosa M23] gi|71162890|gb|EAO12614.1| Ribonuclease T [Xylella fastidiosa Dixon] gi|71731802|gb|EAO33861.1| Ribonuclease T [Xylella fastidiosa Ann-1] gi|182631932|gb|ACB92708.1| ribonuclease T [Xylella fastidiosa M23] Length = 210 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 27/192 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-------QVFLCPNGRKNSPEALKL 62 +V D+ET G + + ++EI + + + T R + V P G P++L++ Sbjct: 23 VVVDVETGGFNWNHHALLEIACIPI-EMDDTGRLYPGEVTSTHVIPAP-GTDIDPKSLEV 80 Query: 63 HGITDE----FLKD-KPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI- 113 GI + F K+ K + IF+ + Q A + HNA FD+ F+NA + R Sbjct: 81 TGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 140 Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD----SHLLS 168 ++P + DT+++A + + L + G+ + H A+ D +HL Sbjct: 141 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFC 198 Query: 169 DV--YIKMMVGG 178 + +MV G Sbjct: 199 TITNIWPLMVAG 210 >gi|303235494|ref|ZP_07322106.1| exonuclease [Prevotella disiens FB035-09AN] gi|302484293|gb|EFL47276.1| exonuclease [Prevotella disiens FB035-09AN] Length = 183 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 7/160 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ET + I E G + ++ K T + P G + ++HGIT + Sbjct: 7 IAIDFETA--SNAQAAICEAG-ISIVKGGKVVETRSWLVRPEGNAYNYWNTRVHGITAKD 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 P F +++E + + +AHNA FD+G I L + + +L Sbjct: 64 TAHAPEFPQVWNEIMTYLADCPIL-VAHNAGFDMGCIRRSLAFYGLKTPEITYYC-SLRA 121 Query: 130 ARRKHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLL 167 AR+ + N L LC+++ I HR+ A + +HL Sbjct: 122 ARKIYDFECNKLEFLCQKFEIPYGQHHRAGDDAAMCAHLF 161 >gi|160689452|gb|ABX45584.1| polymerase C [Bacillus atrophaeus] Length = 259 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 5/92 (5%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +R+ K + +IDTL + R +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNVAYKRLLKVEKAQNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190 + D+ + +KM+ ++ I + + NE+ Sbjct: 59 IYDAEATGYLLLKMLKDAAEKDIQYHDQLNEN 90 >gi|284042646|ref|YP_003392986.1| exonuclease RNase T and DNA polymerase III [Conexibacter woesei DSM 14684] gi|283946867|gb|ADB49611.1| Exonuclease RNase T and DNA polymerase III [Conexibacter woesei DSM 14684] Length = 259 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 16/160 (10%) Query: 7 MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++ FDIETTG+D ++DRI+ AV L ++ + P G + A +HGI Sbjct: 1 MRRLAAFDIETTGIDPQSDRIV-TAAVSLAGDARPTVDHDWLVDP-GVEIPAGATAVHGI 58 Query: 66 TDEFLKDKPSFSS-IFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPL--- 118 T + + + S+ E Q + IA NA+FD+ ++ E +R PL Sbjct: 59 TTDHARAEGRASAEAVEEITAVLAAQLLDHVPVIAFNARFDLTCLDREARRHGVVPLVDR 118 Query: 119 ----DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 D ++D + ++ ++ + L ++C+ Y + + Sbjct: 119 VGGPDGLIVVDPFVLDKQFDRYRRGKRTLGAVCEHYRVRL 158 >gi|9757860|dbj|BAB08494.1| exonuclease-like protein [Arabidopsis thaliana] Length = 500 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 22/159 (13%) Query: 12 FDIETTGL--DSKNDRIIEIGA--------VELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 FD+ETT + I+E G+ VEL +YS R + L +P ++K Sbjct: 16 FDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLI------TPRSVK 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120 +GI E ++ +F+ I +D + + W HN KFD I I +DP +P Sbjct: 70 CNGIKREDVESALTFADIADTVYDILHGRI--WAGHNILKFDCPRIREAFAEIGRDPPEP 127 Query: 121 SRIIDTLSIARRKHPSSRNDLN--SLCKRYGI-TISHRS 156 ID+L++ ++ D+ +L +G+ +HRS Sbjct: 128 KGTIDSLALLTQRFGRRAGDMKMATLATYFGLGNQTHRS 166 >gi|241666520|ref|YP_002984604.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861977|gb|ACS59642.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 326 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 16/107 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGL+ ++D IIEIGAV D ++ L R PE +L GI Sbjct: 75 VILDTETTGLNHRSDEIIEIGAVAFTFNDDGAIGDIVGIYGGLQQPSRPIPPEITRLTGI 134 Query: 66 TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 TD ++ D S ++ E D IAHNA FD F A Sbjct: 135 TDAMVEGQLIDIQSLRTLI-EPADLI-------IAHNAGFDRPFCEA 173 >gi|312891424|ref|ZP_07750941.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter paludis DSM 18603] gi|311296118|gb|EFQ73270.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter paludis DSM 18603] Length = 380 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 5/103 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD+ETTG + DRI+EI ++L D + +T+++ P S E+ +HGI +E L Sbjct: 32 FDLETTGTNIGVDRIVEISVIKLNPDGTDDVKTWKI--NPE-MPISIESSMIHGIYEEHL 88 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 D P F + +E DF + + N +FD+ + E R+ Sbjct: 89 IDAPVFKTAAAEISDFIADSDLAGYNSN-RFDIPMLMEEFLRV 130 >gi|307578072|gb|ADN62041.1| ribonuclease T [Xylella fastidiosa subsp. fastidiosa GB514] Length = 198 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 27/192 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-------QVFLCPNGRKNSPEALKL 62 +V D+ET G + + ++EI + + + T R + V P G P++L++ Sbjct: 11 VVVDVETGGFNWNHHALLEIACIPI-EMDDTGRLYPGEVTSTHVIPAP-GTDIDPKSLEV 68 Query: 63 HGITDE----FLKD-KPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI- 113 GI + F K+ K + IF+ + Q A + HNA FD+ F+NA + R Sbjct: 69 TGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 128 Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD----SHLLS 168 ++P + DT+++A + + L + G+ + H A+ D +HL Sbjct: 129 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFC 186 Query: 169 DV--YIKMMVGG 178 + +MV G Sbjct: 187 TITNIWPLMVAG 198 >gi|28199095|ref|NP_779409.1| ribonuclease T [Xylella fastidiosa Temecula1] gi|32129969|sp|Q87C86|RNT_XYLFT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|28057193|gb|AAO29058.1| ribonuclease T [Xylella fastidiosa Temecula1] Length = 211 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 27/192 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-------QVFLCPNGRKNSPEALKL 62 +V D+ET G + + ++EI + + + T R + V P G P++L++ Sbjct: 24 VVVDVETGGFNWNHHALLEIACIPI-EMDDTGRLYPGEVTSTHVIPAP-GTDIDPKSLEV 81 Query: 63 HGITDE----FLKD-KPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI- 113 GI + F K+ K + IF+ + Q A + HNA FD+ F+NA + R Sbjct: 82 TGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 141 Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD----SHLLS 168 ++P + DT+++A + + L + G+ + H A+ D +HL Sbjct: 142 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNAADAHSAVYDAEKTAHLFC 199 Query: 169 DV--YIKMMVGG 178 + +MV G Sbjct: 200 TITNIWPLMVAG 211 >gi|170730478|ref|YP_001775911.1| ribonuclease T [Xylella fastidiosa M12] gi|167965271|gb|ACA12281.1| ribonuclease T [Xylella fastidiosa M12] Length = 210 Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 27/192 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-------QVFLCPNGRKNSPEALKL 62 +V D+ET G + + ++EI + + + T R + V P G P++L++ Sbjct: 23 VVVDVETGGFNWNHHALLEIACIPI-EMDDTGRLYPGEVTSTHVIPAP-GTDIDPKSLEV 80 Query: 63 HGITDE----FLKD-KPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI- 113 GI + F K+ K + IF+ + Q A + HNA FD+ F+NA + R Sbjct: 81 TGIILDHPFRFAKEEKLALEHIFTPVRTTMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 140 Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD----SHLLS 168 ++P + DT+++A + + L + G+ + H A+ D +HL Sbjct: 141 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNATDAHSAVYDAEKTAHLFC 198 Query: 169 DV--YIKMMVGG 178 + +MV G Sbjct: 199 TITNIWPLMVAG 210 >gi|153006866|ref|YP_001381191.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] gi|152030439|gb|ABS28207.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] Length = 238 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 18/176 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRKNSPEALKLHGI-TD 67 V D E TGLD D I+ IGAV + + R +QVF P + E + +HG+ D Sbjct: 49 VLDCEMTGLDPARDEILSIGAVRIRNGRIVMAERFYQVF-KPTEAVSPKEVILIHGLGPD 107 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPSRI 123 E + P F + I H D+ F+NA L +R K+P +R+ Sbjct: 108 EVSRGLP-LGDALERLLAFIGDSVV--IGHFTSVDLSFLNAALASRKERSLKNPALDTRL 164 Query: 124 IDTLSIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + RR P+ + +L + G + H A D+ V++K++ Sbjct: 165 LYAW-WRRRTSPAGQAAADANLEDIVIEMG--LPRYPAHHAFYDALTTGMVFLKLL 217 >gi|242035185|ref|XP_002464987.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor] gi|241918841|gb|EER91985.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor] Length = 435 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 17/170 (10%) Query: 9 KIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC----PNGRKNSPEALKLH 63 +IVF D+ET+ + ++E GAV + + + L P+ P A + Sbjct: 19 EIVFLDVETS---TPPRVLLEFGAVVVCSRRLVDVSSYATLVRPADPDAAVPDPTA-RCS 74 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSR 122 GIT + + D P F + + +D + + W HN KFD I I + P +P Sbjct: 75 GITRDAVADAPPFRDVADKVYDVLHGR--VWAGHNIVKFDSVIIRDAFAEIGRPPPEPKG 132 Query: 123 IIDTLSIARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDV 170 ++DTL + + D L SL +G+ + +H +L D + DV Sbjct: 133 MVDTLPLLTQWFGPRAGDMKLASLANYFGL---GKQRHRSLDDVKMNIDV 179 >gi|218457859|ref|YP_002418864.1| putative DEDDH exonuclease [Pseudomonas phage SN] gi|218379127|emb|CAT99715.1| putative DEDDH exonuclease [Pseudomonas phage SN] Length = 184 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 77/177 (43%), Gaps = 18/177 (10%) Query: 11 VFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 V+D ETTGL K RIIE V + D K + F+C G K+ Sbjct: 5 VWDTETTGLPFHQRVSLRKQPRIIEFAGV-ITDGEKILDEVE-FICNPGIVIEEIITKIT 62 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---- 119 G+ +E L PSF + DFF+ +A IAHN FD + +L R K L+ Sbjct: 63 GLKNEDLVKHPSFLDQRHKVRDFFSRADAN-IAHNLPFDKFMLTCDLAR-GKLGLEEVNF 120 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 PS I T+ + R R L L + Y + KH AL D LL +V +M V Sbjct: 121 PSLDICTVEESARLF-GHRMRLQHLYEHY--CGPYVQKHRALDDVRLLHEVCKRMGV 174 >gi|332291046|ref|YP_004429655.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus 4H-3-7-5] gi|332169132|gb|AEE18387.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus 4H-3-7-5] Length = 257 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 27/113 (23%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-----------PEA- 59 FD+ETTG++ DRI+EI +++ P+GR+ P A Sbjct: 12 FDLETTGINVAKDRIVEISILKVF--------------PDGREEEFTERINPTVPIPAAT 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 +HGI+D + DKP+F++ + +D + + N +FD+ + EL R Sbjct: 58 TAVHGISDADVVDKPTFAARAKDVYDIIKDADLAGFNSN-RFDIPLLVEELLR 109 >gi|307720332|ref|YP_003891472.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] gi|306978425|gb|ADN08460.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] Length = 247 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 13/128 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTG + + DR+I++G + L +K F C A+++HGIT + Sbjct: 6 VILDTETTGTNEE-DRVIQLGYMVL--GAKEIEVHNEF-CSTDVAIKFGAMEVHGITPDL 61 Query: 70 LKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L+ KP + + + +N I HNA FD+ + E + ++IDTL Sbjct: 62 LEGKPPCVETVAYKRLLELNTSENY-LIIHNAPFDITMLEKEGFKTQ------MKVIDTL 114 Query: 128 SIARRKHP 135 +A+ P Sbjct: 115 RVAKHVMP 122 >gi|77360378|ref|YP_339953.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis TAC125] gi|76875289|emb|CAI86510.1| putative DNA polymerase III, epsilon subunit [Pseudoalteromonas haloplanktis TAC125] Length = 236 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 13/128 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65 + D ETTGLDS+ D I+ +G V Y K +R + V R+N E++ +HGI Sbjct: 48 VAMDFETTGLDSEADDIVSVGLVPFNLQRIYCKHSRHWVV----QPRRNLHEESIIIHGI 103 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRII 124 T + D P F+ I + + + H A + F+ NA L R+++ ++ Sbjct: 104 THSEVDDAPDFNRIIEPLLAALSGKVV--VVHYAAIERPFLNNALLLRLHEGI--EFALV 159 Query: 125 DTLSIARR 132 DT+ I +R Sbjct: 160 DTMDIEKR 167 >gi|328473671|gb|EGF44506.1| hypothetical protein VP10329_13450 [Vibrio parahaemolyticus 10329] Length = 254 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 8/113 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + + I+ D ETTGL S+ + I+E A+ + T + L EA Sbjct: 48 MKKLSTQNAIILDTETTGLGSQAE-IVEFTAI----CAHTGKVIVNELVKPTCSIPAEAT 102 Query: 61 KLHGITDEFLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 +HGITDE +KD P F +FS F N + I +N+ FD I L + Sbjct: 103 AIHGITDEDVKDAPDFHLVFSNHFLPLLNGR--PIIIYNSDFDTRLIIQSLDK 153 >gi|260768304|ref|ZP_05877238.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|260616334|gb|EEX41519.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] Length = 193 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 5/124 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M + D ETTGL D II IG V L+ NR + P +K ++ +HGI Sbjct: 1 MEFVAMDFETTGLSVDKDEIITIGLVPFTLERIYLNRAKHWTVRPR-QKLDEHSIVIHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + D P S IF E + + + H + + F++ L+R + ++ +ID Sbjct: 60 THNDIMDAPDLSDIFEEVLEHLAGRVL--VVHYHRIEREFLDRALKRRIGEGIEFP-VID 116 Query: 126 TLSI 129 T+ I Sbjct: 117 TMEI 120 >gi|302873810|ref|YP_003842443.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] gi|307689948|ref|ZP_07632394.1| DNA polymerase III subunit epsilon [Clostridium cellulovorans 743B] gi|302576667|gb|ADL50679.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] Length = 306 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 14/171 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K + IG V + + R + + P + P + +HGI Sbjct: 1 MNFIAIDFETA--NEKRNSPCSIGIVVVKNGEVVERIHHL-IKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124 ++++P F ++++ FNE + IAHNA FD+ + +AEL I L + I Sbjct: 58 PAMVENEPEFHEVWAKIKHHFNE--SLVIAHNASFDISVLRKSAELYDIE---LPSFKYI 112 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ +A+ + N LN++ G H H AL D+ S++ + + Sbjct: 113 CTMRLAKNFYRGIENAKLNTVNDFLGYEFKH---HDALYDALACSNILLNI 160 >gi|153003684|ref|YP_001378009.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] gi|152027257|gb|ABS25025.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] Length = 200 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 15/175 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKN-SPEALKLHGITDEF 69 D+ET GLD K+D I+ +G V + + + ++ + P+ R+ P++++ H + Sbjct: 16 LDLETGGLDPKSDPILAVGMVPIRGGAIRLAESYASLVRPDVREGIRPDSMRAHHLVPRD 75 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P ++ + D + A + HNA DV F+ +R + P ++DT+ + Sbjct: 76 VAEAPPLETVLDQI-DARIREGA-LLVHNAALDVSFLRRAYRRAGRRWPGPP-VVDTVVL 132 Query: 130 -------ARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 AR P + +LN R + + H AL D+ +++++ + Sbjct: 133 LLKAAKRARFVDPDATGIEPELNLAAARRRAKLPEYASHDALTDAIAAAELFLVL 187 >gi|270158349|ref|ZP_06187006.1| ribonuclease T [Legionella longbeachae D-4968] gi|289163409|ref|YP_003453547.1| ribonuclease T [Legionella longbeachae NSW150] gi|269990374|gb|EEZ96628.1| ribonuclease T [Legionella longbeachae D-4968] gi|288856582|emb|CBJ10387.1| ribonuclease T [Legionella longbeachae NSW150] Length = 205 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 21/189 (11%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKN 55 KN+ R +V D+ET G++ + + ++E+ V +L + + F+ L +G + Sbjct: 12 KNRFRGFLPVVVDVETAGVNPQKNALLEMCIVLILMDDQGKFYRGKSYFEHILPFSGSEL 71 Query: 56 SPEALKLHGITDEF------LKDKPSFSSIFSEFW---DFFNEQNAEWIAHNAKFDVGFI 106 P++L+ + I D F + +K + ++F + F Q A + HNA FD+ FI Sbjct: 72 DPKSLEFNQI-DPFQPLRFAIDEKTALENLFHPIFAALKIFQCQRAVLVGHNAWFDLLFI 130 Query: 107 NAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 ++R K P DT ++ + + L + GI + H A+ D+ Sbjct: 131 KEAIKRTGVKSPFHAFTCFDTATLGGFIY--GQTVLAKAAQAAGIAFDAQEAHSAIYDAE 188 Query: 166 LLSDVYIKM 174 +D++ M Sbjct: 189 KTADLFCHM 197 >gi|254712763|ref|ZP_05174574.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1] gi|254715832|ref|ZP_05177643.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1] gi|261217593|ref|ZP_05931874.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1] gi|261320470|ref|ZP_05959667.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M644/93/1] gi|260922682|gb|EEX89250.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1] gi|261293160|gb|EEX96656.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M644/93/1] Length = 329 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 13/103 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P + P ++ G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQP----SKPIPAEITG 129 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE +K + +I + D + IAHNA FD F+ Sbjct: 130 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 168 >gi|317407747|gb|EFV87675.1| exonuclease [Achromobacter xylosoxidans C54] Length = 183 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 12/157 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITD- 67 +V D+ETTGL + + I+E AV + R + + R P + +L GIT+ Sbjct: 18 VVADLETTGLSTASCEILEFAAVRVGADGAAEREYAQVV--RTRATVPPFITRLTGITEA 75 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + F+ F DF + + HNA FD F++A + + + TL Sbjct: 76 EVERQGVPVGQAFAAFLDFVEDLPVFF--HNASFDRRFLDAAALQTGLPFANATHC--TL 131 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163 ++ARR P + L+ L + G + H AL D Sbjct: 132 ALARRAWPELPSHKLDVLARHVG---ASEPTHRALAD 165 >gi|89052623|ref|YP_508074.1| exonuclease [Jannaschia sp. CCS1] gi|88862172|gb|ABD53049.1| Exonuclease [Jannaschia sp. CCS1] Length = 196 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 12/158 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + R I D+ET ++ I +IG + N T + P + SP Sbjct: 10 VPDGPFRFIAVDVETA--NNAQGSICQIGLCCVGSDDSLN-TVSTLIDPE-QSFSPFNTD 65 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 LHGI+ E + P+F ++ + NA + +++FD A R + P+ S Sbjct: 66 LHGISAETVNGAPTFPQAYASLYPVL---NAHRLVQHSRFDEAAFTAACARYDV-PMVTS 121 Query: 122 RIIDTLSIARRKHP----SSRNDLNSLCKRYGITISHR 155 D++ IAR+ P + + L SL K G++ H Sbjct: 122 HWTDSVKIARQAWPELKGAGGHGLASLKKALGLSFHHH 159 >gi|269964031|ref|ZP_06178337.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831250|gb|EEZ85403.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 249 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 17/186 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+++ D I+ IG V L + + + + PN R+ + E++ +HGITD Sbjct: 60 VSVDFETTGLNAEEDAILTIGLVPFTLGRVQCSGSRHWVVNPN-RELNEESVVIHGITDS 118 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127 +K+ P I D + + H + F NA L + + P ++DTL Sbjct: 119 EVKNAPQLEQILDAILDALAGKIV--VVHYKNIERQFFNNALLNSVGEGIQFP--VVDTL 174 Query: 128 ----SIARRKHPSSRNDLNSLCKRYG-ITISH---RSKHGALLDSHLLSDVYIKMMVGGS 179 +I RR+ N L K+ G + + H R A H L+D + + Sbjct: 175 DIEYAIQRRECEGWLNKLKG--KKPGSVRLGHARERYHLPAYQPHHALTDALATAELLQA 232 Query: 180 QINFGF 185 Q+ + F Sbjct: 233 QLQYHF 238 >gi|145298879|ref|YP_001141720.1| DNA polymerase III subunit epsilon [Aeromonas salmonicida subsp. salmonicida A449] gi|142851651|gb|ABO89972.1| DNA polymerase III, epsilon subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 208 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 21/180 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-----LHG 64 I D ETT LD I+ IGAV + K NR + R +P +L +HG Sbjct: 32 IALDFETTSLDPARAEIVSIGAVRI----KGNRIL-TGEALSLRVQAPASLNAQSVVIHG 86 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-----INKDPLD 119 + + L+ + + F + E + ++ +D+ +N Q+ + + ++ Sbjct: 87 LRHQDLQQGMRLEAALRQLLAFIGPR--ELVGYHIAYDLRILNLACQKQWGLTLAQQGIE 144 Query: 120 PSRII-DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 SR+ D L R++P + DL+ R + + H AL D+ + +Y+++ GG Sbjct: 145 VSRLYHDHLY---RRYPDAVIDLHLAAIRQHLNLPSLPVHDALSDAITAALIYLRLTQGG 201 >gi|325269989|ref|ZP_08136598.1| exonuclease [Prevotella multiformis DSM 16608] gi|324987712|gb|EGC19686.1| exonuclease [Prevotella multiformis DSM 16608] Length = 163 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 13/155 (8%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D ET + + + +G V ++ + TF + P +++HG+T D Sbjct: 8 DFETANFERCS--VCSVGVV-IVRGGEIVDTFYSLIQPEPNYYHWRCVQVHGLTCADTDD 64 Query: 73 KPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P +FSE W + +AHNA FD G + A D D DTL A Sbjct: 65 AP----VFSEVWKVIEPMIEGLPLVAHNAPFDKGCLKAAFYTYQMDYPD-YEFFDTLKAA 119 Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 RR+ P + L ++ G +S + H AL D+ Sbjct: 120 RRRLPDLPDHQLQTVAAECGYDLS--NHHHALADA 152 >gi|8134657|sp|Q9Z5X0|RNT_AZOVI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|4378828|gb|AAD19703.1| putative RNase T [Azotobacter vinelandii] Length = 116 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 95 IAHNAKFDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152 + HN+ FD+ F+NA + R I ++P P DT ++A + + L C+ GI Sbjct: 23 VGHNSSFDLAFLNAAVARCDIKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQSAGIEF 80 Query: 153 SHRSKHGALLDSHLLSDVYIKMM 175 R H A D+ ++++ ++ Sbjct: 81 DGREAHSARYDTEKTAELFCGIV 103 >gi|326385272|ref|ZP_08206935.1| DNA polymerase III subunit epsilon [Gordonia neofelifaecis NRRL B-59395] gi|326196015|gb|EGD53226.1| DNA polymerase III subunit epsilon [Gordonia neofelifaecis NRRL B-59395] Length = 236 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 29/187 (15%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-LCPNG-----RKNSPEALK 61 R + D+ETTGL++ +EIGAVE+L+ +V P+ K SP+AL Sbjct: 4 RYVALDLETTGLNTLTACPLEIGAVEILENDPRGPYGRVLGFVPHTPDAVLHKASPDALA 63 Query: 62 LHGITDEFLKDKPSFSSIF--SEFWDFFNE-----QNAEWIAHNAKFDVGFINAELQRIN 114 ++ + L ++++ +E D E + A + N +D + A L Sbjct: 64 VNRFYERRL-----YAAMLRPAETADMMLELVELLRGATLVGANVAYDAAILWAWLATFT 118 Query: 115 KDPLDPS--RIIDT-----LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 D P R+ D +++ + PS L S C+ + + + H AL D+++ Sbjct: 119 DDETPPWHFRLYDVELATEVALNLDRTPS----LRSSCELWNVDTDRDAAHTALGDAYMA 174 Query: 168 SDVYIKM 174 +DV++ + Sbjct: 175 ADVFLAV 181 >gi|255576154|ref|XP_002528971.1| exonuclease, putative [Ricinus communis] gi|223531561|gb|EEF33390.1| exonuclease, putative [Ricinus communis] Length = 194 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 28/174 (16%) Query: 10 IVFDIETTGLDSKNDR--IIEIGA--------VELLDYSKTNRT--FQVFLCPNGRKNSP 57 + FD+ETT + R ++E GA VE+ Y+ R V +GR Sbjct: 16 VFFDLETTVPNRAGGRFWVLEFGAIIVCPRKLVEIESYTTLIRPKDLSVVALRSGRSG-- 73 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKD 116 GIT + D P+F + + + N + W HN + FD I + KD Sbjct: 74 ------GITRNAVADAPAFEEVSDKIYSILNGRI--WAGHNIRRFDCIRIKEAFAELGKD 125 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLN--SLCKRYGITISHRSKHGALLDSHLLS 168 P P +ID+L + +K +L +L +G+ + KH +L D + S Sbjct: 126 PPVPVGMIDSLGVLSQKFGRRAGNLKMATLADYFGL---GQQKHRSLDDVRIKS 176 >gi|171059184|ref|YP_001791533.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6] gi|170776629|gb|ACB34768.1| Exonuclease RNase T and DNA polymerase III [Leptothrix cholodnii SP-6] Length = 218 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 3/99 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLD D II IGAV ++ + T+ ++ + P RK S +++++H + ++ Sbjct: 42 VALDCETTGLDVGRDEIIAIGAVRIVGNRIMTSERLELLVRPEKRKLSADSVRVHRLREQ 101 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 + + F + + + +FD+ IN Sbjct: 102 DVAQGLKPEEAVMQLMHFIGSRPL--VGYYLEFDLAMIN 138 >gi|269123524|ref|YP_003306101.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus moniliformis DSM 12112] gi|268314850|gb|ACZ01224.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus moniliformis DSM 12112] Length = 205 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 30/187 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-----FQVFLCPN-GRKNSPEALKLH 63 I FD+ET G++ D ++ I A+++ + TN+ F F N G + + +AL ++ Sbjct: 6 IFFDVETNGVNP-TDSVLSISAMKVTYDTITNKMVKLGEFDRFYFRNEGEEPNFDALNVN 64 Query: 64 GITDEFLKDKPSFSSI------------FSEFWDFFNEQNAE-WIAHNAKFDVGFINAEL 110 G+ D+ ++ + + S I F EF D NAE ++AHN +FD FI +L Sbjct: 65 GLFDDEIERRRNLSLIKYAKTFNEDIVNFFEFCD-----NAEHFVAHNIRFDRQFIPFKL 119 Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLS 168 + L+ ID + I + SS L Y I + H ++ D ++ Sbjct: 120 KYQFDTMLEN---IDIVKIPSNSYYSSFKWPKLMECANYYNIPVDENELHNSMYDVVIMG 176 Query: 169 DVYIKMM 175 V KM+ Sbjct: 177 RVMFKML 183 >gi|256818923|ref|YP_003140202.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM 7271] gi|256580506|gb|ACU91641.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM 7271] Length = 442 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 9/154 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I +I + + T++ F + P R KL GI ++ L Sbjct: 4 ILDIETTGGKYNEEGITDIAIYQFNGHEITDQ-FISLINPE-RPIQEFVTKLTGINNKML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P F + + + + HNA FD + E +R+ D + + + T+ ++ Sbjct: 62 RNAPKFYEVAKRIVEI--TTDCIIVGHNAAFDYRILQTEFRRLGYDFVRTT--LCTVELS 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGAL 161 R P+ + L L + GI +S HR+ AL Sbjct: 118 ERLIPNKESYSLGKLVRSLGIPVSDRHRASGDAL 151 >gi|23013261|ref|ZP_00053177.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 302 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 10/102 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-----PEALKLHGI 65 V D+ETTGLD D IIE+G V L ++S R +++ + PE +L GI Sbjct: 44 VVDVETTGLDLVKDEIIELGMV-LFEFSSDGRIYRILDVVEAFQEPTIPILPEITQLTGI 102 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 T E + + SI + A IAHNA FD F+ Sbjct: 103 TAEMV----AGHSIDVAEIERLIAPVALVIAHNAGFDRRFLE 140 >gi|150377384|ref|YP_001313979.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419] gi|150031931|gb|ABR64046.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium medicae WSM419] Length = 308 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 49/107 (45%), Gaps = 10/107 (9%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS----PEALKL 62 +R ++ D ETTGL+ + D IIEIGAV N + L ++ S PE +L Sbjct: 53 LRGLILDTETTGLNHRKDEIIEIGAVAFTFDDAGNIGDVIDLYGGLQQPSISVPPEITRL 112 Query: 63 HGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 GITDE L K + + E IAHNA FD F A Sbjct: 113 TGITDEMVLGQKIDLHRLRA-----VVEPADLIIAHNAGFDRPFCEA 154 >gi|86131778|ref|ZP_01050375.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] gi|85817600|gb|EAQ38774.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] Length = 257 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 27/113 (23%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS------------PEA 59 FD+ETTG++ DRI+EI +++ P+GR+ Sbjct: 12 FDLETTGVNVAKDRIVEISILKVF--------------PDGREEEFTERINPTVPIPAVT 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 +HGI+D + DKP+F+ E +D + + N +FD+ + EL R Sbjct: 58 TAVHGISDADVADKPTFAERAKEIYDIIKDSDLAGFNSN-RFDIPLLVEELLR 109 >gi|104773741|ref|YP_618721.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513740|ref|YP_812646.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300813077|ref|ZP_07093455.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313123346|ref|YP_004033605.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|103422822|emb|CAI97474.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093055|gb|ABJ58208.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300495918|gb|EFK31062.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312279909|gb|ADQ60628.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325125397|gb|ADY84727.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp. bulgaricus 2038] gi|325684506|gb|EGD26670.1| exonuclease [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 178 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 7/118 (5%) Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + +K+H IT E + P+ + ++ + F + AHNA+FD + L R Sbjct: 49 QQVKVHDITAEDVAGAPTMAEVWPKIQPLF-QPGMLVAAHNARFDCNVMKQSLARYGIA- 106 Query: 118 LDPSR-IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P ++D+L ++R P N LN++ G+ + H H AL DS + + +K Sbjct: 107 -EPHYLVLDSLKVSRELEPGLDNYQLNTVSDLLGVELWHH--HNALSDSEACAGILLK 161 >gi|330720110|gb|EGG98518.1| Ribonuclease T [gamma proteobacterium IMCC2047] Length = 187 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 25/178 (14%) Query: 14 IETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQV--FLCPNGRKNSPEALKLHGI 65 +ET G ++ D ++EI AV + L Y +F V F G A+K GI Sbjct: 1 METGGFNAATDALLEIAAVPIQMDEQGLLYPGETLSFHVKPF---EGANIEEAAIKFTGI 57 Query: 66 TDEFL------KDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 D + ++ + IF A + HNA FD GF+NA +R I Sbjct: 58 -DPYHPLRIANTEQEAMDGIFRTVRKAVKASGCKRAILVGHNAHFDHGFVNAAAERCDIK 116 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++P P DT+S+A + L C+ I S+ H A D+ ++++ Sbjct: 117 RNPFHPFSNFDTVSLAGLA--VGQTVLARACEVAEIEFSNEEAHSARYDTEKTAELFC 172 >gi|262194198|ref|YP_003265407.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077545|gb|ACY13514.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 15/154 (9%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNS-PEALK 61 M+ +VF D ETTGLD + I+EI A+ + + +T R + + P +++ PEAL+ Sbjct: 1 MQPLVFIDCETTGLDPERHEILEIAAIRV--HPQTLDEERELVLRVRPERLEDADPEALE 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LD 119 ++G D S +E + A HN FD F+ A + P LD Sbjct: 59 VNGYRRRAWADAVSLGDAMAELAPML--EGAVLAGHNVAFDRRFLEAAWDYVGHRPENLD 116 Query: 120 PSRIIDTLSIARRKHPSSRND---LNSLCKRYGI 150 +DT ++A + D L +C G+ Sbjct: 117 -HHALDTATLAFPLLMAGEIDSLSLTPVCAHLGV 149 >gi|315224304|ref|ZP_07866138.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga ochracea F0287] gi|314945694|gb|EFS97709.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga ochracea F0287] Length = 442 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 9/154 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I +I + + T++ F + P R KL GI ++ L Sbjct: 4 ILDIETTGGKYNEEGITDIAIYQFNGHEITDQ-FISLINPE-RPIQEFVTKLTGINNKML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P F + + + + HNA FD + E +R+ D + + + T+ ++ Sbjct: 62 RNAPKFYEVAKRIVEI--TTDCIIVGHNAAFDYRILQTEFRRLGYDFVRTT--LCTVELS 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGAL 161 R P+ + L L + GI +S HR+ AL Sbjct: 118 ERLIPNKESYSLGKLVRSLGIPVSDRHRASGDAL 151 >gi|330719279|ref|ZP_08313879.1| DNA polymerase III, epsilon subunit [Leuconostoc fallax KCTC 3537] Length = 177 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + +HGI + + D P FS ++ F E +AHNA FD G + L + + Sbjct: 50 VAIHGIEEHDVLDAPKFSELWPVIQPLFTEDKL-VVAHNAPFDNGVLKGTLNYYGLE--E 106 Query: 120 PS-RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHR 155 P ++DT+ +R+ PS N LN++ + GI++ H Sbjct: 107 PHYMLLDTVRTSRQFFPSFNNHKLNTVAENLGISLVHH 144 >gi|225012865|ref|ZP_03703298.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium MS024-2A] gi|225002987|gb|EEG40964.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium MS024-2A] Length = 458 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 10/152 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI A+ + K F + P ++ P KL GI + L Sbjct: 4 ILDIETTGGKYDEEGITEI-AIYKYNGQKVVDQFSSLINPQ-KEIQPFVEKLTGINSKML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + + ++ +AHNA FD + E +R+ P + + I T+ ++ Sbjct: 62 RSAPKFYEVAKRIVEL--TEDCILVAHNASFDYRILQTEFRRLG-FPFE-RKSICTVELS 117 Query: 131 RRKHP-SSRNDLNSLCKRYGITIS--HRSKHG 159 ++ P L L + GI S HR+ HG Sbjct: 118 QKLLPDEPAYSLGKLVRSLGIPFSDQHRA-HG 148 >gi|126700009|ref|YP_001088906.1| putative DNA polymerase III subunit epsilon [Clostridium difficile 630] gi|254975983|ref|ZP_05272455.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-66c26] gi|255093371|ref|ZP_05322849.1| putative DNA polymerase III, epsilon chain [Clostridium difficile CIP 107932] gi|255101551|ref|ZP_05330528.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-63q42] gi|255307420|ref|ZP_05351591.1| putative DNA polymerase III, epsilon chain [Clostridium difficile ATCC 43255] gi|255315116|ref|ZP_05356699.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-76w55] gi|255517786|ref|ZP_05385462.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-97b34] gi|255650901|ref|ZP_05397803.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-37x79] gi|260683972|ref|YP_003215257.1| putative DNA polymerase III subunit epsilon [Clostridium difficile CD196] gi|260687632|ref|YP_003218766.1| putative DNA polymerase III subunit epsilon [Clostridium difficile R20291] gi|306520788|ref|ZP_07407135.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-32g58] gi|115251446|emb|CAJ69279.1| DNA polymerase III, epsilon subunit [Clostridium difficile] gi|260210135|emb|CBA64288.1| putative DNA polymerase III, epsilon chain [Clostridium difficile CD196] gi|260213649|emb|CBE05485.1| putative DNA polymerase III, epsilon chain [Clostridium difficile R20291] Length = 168 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 5/159 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGLD I + + + + + + P G +S +L I++E Sbjct: 5 VVVDLETTGLDPYKGCEIIEIGITEIKNEQIVKNYSRLIKPKGIISSF-ITELTHISNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++++ + F + ++ IAHNAKFD+ F+N L+ ++ +P++ L Sbjct: 64 VENEEPLELVLPRFRKYIGDRTI--IAHNAKFDLKFLNYYLRMLDLEPINNYICTVELLK 121 Query: 130 ARRKHPSSRNDLNSLCKRYGI--TISHRSKHGALLDSHL 166 + + L + C Y I +HR+ L + L Sbjct: 122 KCKSYKGKNKKLETACAYYNIENINAHRADSDTLATAKL 160 >gi|300779647|ref|ZP_07089503.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] gi|300533757|gb|EFK54816.1| DNA-directed DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] Length = 238 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 6/122 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTG+ ND I+EIG V L T++ + P+ + + +HGI ++ + Sbjct: 22 VIDFETTGM-RDNDAIVEIGVVLLDKDLSVEDTWEALVNPHRLILNTD---VHGIEEDDV 77 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +F ++ F + + +AH+A ++ ++ E +R D P IDT+ ++ Sbjct: 78 DRGLTFPALAGYFKHLLHGRT--LVAHDATYEKRYLRYEFERWGMDDTVPDTWIDTMQLS 135 Query: 131 RR 132 R Sbjct: 136 SR 137 >gi|332876762|ref|ZP_08444520.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685321|gb|EGJ58160.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 256 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 20/173 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64 + FD+ETTG++ DRI+E+ +++ + SK+ R N + PE + +HG Sbjct: 10 VFFDLETTGINITTDRIVELCYIKVYPNGNEESKSMRI-------NPEMHIPESSSAIHG 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSR 122 I DE + D P+F + E + + ++ N+ +FDV + E R D + + Sbjct: 63 IYDEDVADCPTFKQVARELANTI--KGCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRK 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ID +I H R L++ K Y + H AL D+ +V + + Sbjct: 121 FIDVQNIY---HKLERRTLSAAYKFY-CGKDLENAHSALADTRATYEVLMAQL 169 >gi|255534253|ref|YP_003094624.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium 3519-10] gi|255340449|gb|ACU06562.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium 3519-10] Length = 407 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 9/153 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIE+ G + + IIEI AV D + F + P + +P KL I+ + + Sbjct: 4 VIDIESNGAGFRKESIIEI-AVYKYDGHEIVDQFISLVNPES-EITPFVQKLTKISPKMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K P F I + +N + HN FD + E +R+ D +DT+ +A Sbjct: 62 KTAPKFPEIARRVIEI--TRNTILVGHNIDFDYRMLRQEFKRLGYD--FTINTLDTIPLA 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITI--SHRSKHGA 160 ++ P + + L L K GI + HR+ A Sbjct: 118 KKLIPEAESYSLGKLVKSLGIPLVDQHRASGDA 150 >gi|254720591|ref|ZP_05182402.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13] gi|265985632|ref|ZP_06098367.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13] gi|306838555|ref|ZP_07471392.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653] gi|264664224|gb|EEZ34485.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13] gi|306406341|gb|EFM62583.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653] Length = 332 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ + E ++ G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE +K + +I + D + IAHNA FD F+ Sbjct: 133 ITDEMVKGR----TIPRDELDALIDGADIIIAHNAGFDRPFLE 171 >gi|146293452|ref|YP_001183876.1| exonuclease, RNase T and DNA polymerase III [Shewanella putrefaciens CN-32] gi|145565142|gb|ABP76077.1| Exonuclease, RNase T and DNA polymerase III [Shewanella putrefaciens CN-32] Length = 223 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 27/168 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL------LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + D+E TGLD D+I+ IG V + L+ ++ + Q+ R + ++ +H Sbjct: 38 MAMDLEMTGLDPLQDQILSIGLVPIEHGVIPLEGAQ-QKLVQI------RGSVGQSATIH 90 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSR 122 GI D L + + W + +AH++ D F+ ++ I ++ PS Sbjct: 91 GILDNHLVQAVTIEDAMA--WFIAKTRGRVLVAHHSPLDCRFLQQDILAIYHQAVFLPS- 147 Query: 123 IIDTLSIARRK-----HPSSRNDLN-SLCK-RYGITISHRSKHGALLD 163 IDTL + +R+ H L C+ RYG+ + S H AL D Sbjct: 148 -IDTLMLEKRRLLRGHHAIKEGSLRLGACRERYGLPVY--SAHSALTD 192 >gi|297610461|ref|NP_001064570.2| Os10g0407500 [Oryza sativa Japonica Group] gi|255679392|dbj|BAF26484.2| Os10g0407500 [Oryza sativa Japonica Group] Length = 517 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 6/107 (5%) Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHN-AKFDVGFINAELQR 112 S +++ +GIT + + P+F + + +E + W HN +FD+ I Sbjct: 81 SAASVRCNGITRDAVAAAPAFRDVADAVYSVLHEFSIGRVWAGHNIVRFDLARIREAFAE 140 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156 I + P +P +IDTL + +K D+ SL +G+ SHRS Sbjct: 141 IGRPPPEPKGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRS 187 >gi|305680029|ref|ZP_07402839.1| DNA polymerase III, epsilon subunit [Corynebacterium matruchotii ATCC 14266] gi|305660649|gb|EFM50146.1| DNA polymerase III, epsilon subunit [Corynebacterium matruchotii ATCC 14266] Length = 407 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 29/147 (19%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + ++TTG+ +++ I AV L + + F L + P +HG++ E Sbjct: 55 VAVTVKTTGIHPSTAQLVVIDAVVLTASGEPDSDFHAVLS---VPDDPGPKHMHGLSREE 111 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL------------------- 110 + D SFSSI + + I HN GFI+ E Sbjct: 112 IADGKSFSSILKALGKTIDGRT--MITHNVPLVWGFIHKEARRAMTAAARANRRRGSRGK 169 Query: 111 ----QRINKDPLDPSRIIDTLSIARRK 133 QR+ P P I+D L+ ARR+ Sbjct: 170 PRRRQRVGHVP-RPVGIVDMLATARRR 195 >gi|260102659|ref|ZP_05752896.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260083529|gb|EEW67649.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 249 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 9/108 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIETTGLD D+II IGAV+ + SK R ++ L + K+ +T E Sbjct: 128 VALDIETTGLDITKDQIISIGAVKYISKSKCERFYR--LIKTDYEIPTHISKITQLTSEK 185 Query: 70 LKDKPSFSSIFSEFWD---FFNEQNAEWIAHNAKFDVGFINAELQRIN 114 L S +F D F ++ + +N FD+ F+N + Q+ N Sbjct: 186 LNQ--SGIELFDALEDLKKFLADR--LIVGYNLNFDINFLNRDYQKYN 229 >gi|262194078|ref|YP_003265287.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077425|gb|ACY13394.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 15/154 (9%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNS-PEALK 61 M+ +VF D ETTGLD + I+EI A+ + + +T R + + P +++ PEAL+ Sbjct: 1 MQPLVFIDCETTGLDPERHEILEIAAIRV--HPQTLDEERELVLRVRPERLEDADPEALE 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LD 119 ++G D S +E + A HN FD F+ A + P LD Sbjct: 59 VNGYRRRAWADAVSLGDAMAELAPML--EGAVLAGHNVAFDRRFLEAAWDCVGHRPENLD 116 Query: 120 PSRIIDTLSIARRKHPSSRND---LNSLCKRYGI 150 +DT ++A + D L +C G+ Sbjct: 117 -HHALDTAALAFPLLMAGEIDSLSLTPVCAHLGV 149 >gi|260591581|ref|ZP_05857039.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319] gi|260536381|gb|EEX18998.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319] Length = 896 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 26/169 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV---------ELLD-YSKTNRTFQVFLCPNGRKNSPEA 59 +VFD ETTGLD D IIEI A+ E LD Y KT++ L G K++P Sbjct: 515 VVFDTETTGLDVFADDIIEIAAMKIKGGEIVGEPLDLYIKTDKP---ILPKLGDKDNP-- 569 Query: 60 LKLHGITDEFLKDKPSFS--SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 ++ I E L + + F + + + HNA +D I+ LQR D Sbjct: 570 --MYAIYHEKLSAEELITPQEALQRFLAYIGTR--PILGHNASYDYNIIDNCLQRYCNDT 625 Query: 118 LDPSR--IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLD 163 L + D+L + R PS + L SL + + +T ++ H A+ D Sbjct: 626 LKAHKNPCFDSLKLIRLLSPSLHSYKLESLLETFQLT--GKNSHQAIDD 672 >gi|17988635|ref|NP_541268.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. 16M] gi|17984439|gb|AAL53532.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M] Length = 272 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ + E ++ G Sbjct: 14 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 72 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE +K + +I + D + IAHNA FD F+ Sbjct: 73 ITDEMVKGR----TIPRDELDALIAEADIIIAHNAGFDRPFLE 111 >gi|85706653|ref|ZP_01037745.1| probable DNA polymerase III (epsilon chain) protein [Roseovarius sp. 217] gi|85668711|gb|EAQ23580.1| probable DNA polymerase III (epsilon chain) protein [Roseovarius sp. 217] Length = 193 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 14/130 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R D+E G + IIE+G VE+ T R P + +P ++HGIT+ Sbjct: 3 RMWAVDVEGNG--ATPPEIIELGIVEMDGLRLTGRIKHWQFRPE-LEITPIVSRIHGITN 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--DPLDPSRIID 125 E + D P F + + + + A + HN + EL+ ++K P+ D Sbjct: 60 EDVADAPPFDDVVDDILLWL--EGAPIVGHN-------VRVELEALSKVLPGWKPAAAYD 110 Query: 126 TLSIARRKHP 135 TL +ARR P Sbjct: 111 TLKVARRLLP 120 >gi|282852211|ref|ZP_06261563.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 224-1] gi|282556630|gb|EFB62240.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 224-1] Length = 937 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 11/153 (7%) Query: 11 VFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDE 68 V D+ETTG ++ D II+ G ++ K + + + P+ + P+A++ L I++ Sbjct: 12 VVDLETTGTQRNQGDHIIQFGCA-IIKKRKVVKIYSFLINPH--REIPQAVENLTHISNR 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + F+ + +N ++AHN FD+ F+N EL +PL + IDT+ Sbjct: 69 DVAQARDFNYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTVE 125 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGA 160 +A+ P+ L L R + I H + H A Sbjct: 126 LAQIAFPTFPSYKLRDLTAR--LKIKHLNPHRA 156 >gi|110637752|ref|YP_677959.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC 33406] gi|110280433|gb|ABG58619.1| DNA polymerase III epsilon subunit [Cytophaga hutchinsonii ATCC 33406] Length = 283 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 6/103 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FD+ETTG++ DRIIEI V + D +TF+V G ++ +HGI D+ Sbjct: 25 FDLETTGVNISTDRIIEICIVRVSPPDEKVEVKTFRV---NPGMPIPDQSSAIHGIYDKD 81 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + DKP+F+ I + F + + ++ +FD+ + E R Sbjct: 82 VADKPTFTEIAHQINQFMKDCDLGGF-NSIRFDIPLLIEEFFR 123 >gi|296533190|ref|ZP_06895816.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis ATCC 49957] gi|296266484|gb|EFH12483.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis ATCC 49957] Length = 304 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 60/155 (38%), Gaps = 15/155 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL---LDYS--KTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D+ETTGLD D IIE+ + LD + F P R PE L G Sbjct: 51 LVLDVETTGLDHGQDEIIELAMLPFTYGLDGTLYSVGEAFSRLRQP-ARPIPPEVTALTG 109 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +TD + + S E F A IAHNA FD F A P S + Sbjct: 110 LTDAMVAGQ----SFTPEEVAAFIGPAALVIAHNAGFDRRFAEAFCPDFAAKPWACS--L 163 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKH 158 + A R L L R+G+ HR+ H Sbjct: 164 HGVDWAAEGFEGRR--LGDLAARHGLFFDGHRAVH 196 >gi|291529581|emb|CBK95167.1| DNA polymerase III, alpha subunit (gram-positive type) [Eubacterium rectale M104/1] Length = 345 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 12/129 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF------QVFLCPNGRKNSPEAL-KL 62 +V+D+ETTG SKN RI+ A+ Y + +FL P P + + Sbjct: 18 VVYDLETTGFKSKNTRILSFSAIR---YQVSEHGMDEIDRRNMFLNP--MMTIPAYITAV 72 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 + IT+E + D P+ +E + N + +NA FD G +N +RI P Sbjct: 73 NHITNEKVADCPTEYEAGAEILSYLNSADFVSGYNNANFDDGLVNEMARRIGFGKWIPKN 132 Query: 123 IIDTLSIAR 131 ID + +A+ Sbjct: 133 EIDVMILAK 141 >gi|224124082|ref|XP_002330100.1| predicted protein [Populus trichocarpa] gi|222871234|gb|EEF08365.1| predicted protein [Populus trichocarpa] Length = 470 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 10/161 (6%) Query: 4 KNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCP-NGRKNSPEA 59 +NK FD+ETT + I+E GA+ + + R++ + P N + S + Sbjct: 2 ENKTEIAFFDVETTVPTRPGQGYAILEFGAILVCPQKLEEIRSYSTLVRPSNPKLISSLS 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118 ++ +GI E + PSF+ I +D + + W HN +FD I I + Sbjct: 62 VRCNGIIPEAVVSAPSFADIADTVYDILHGRI--WAGHNIVRFDCVRIREAFAEIGRAAP 119 Query: 119 DPSRIIDTLSIARRKHPSSRNDLN--SLCKRYGI-TISHRS 156 +P ID+L++ +K ++ SL +G+ +HRS Sbjct: 120 EPKGTIDSLALLTQKFGRRAGNMKMASLATYFGLGNQTHRS 160 >gi|256827957|ref|YP_003156685.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium baculatum DSM 4028] gi|256577133|gb|ACU88269.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium baculatum DSM 4028] Length = 177 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 7/146 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET DS D +G ++ +R + + P R SP + +HGI Sbjct: 8 VAIDFETA--DSCRDSACAVGLTKVQGGEIVDRLYGLIRPPRSRF-SPFCVNVHGIHWSD 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+F + E F + A+++ AHNA FD + A + P + T+ Sbjct: 65 VKDAPAFREFWIENAGFL--EGADFLAAHNASFDRSVLGA-CCTMAGLPAPSLPFVCTVE 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISH 154 +AR + L +C+ G+ ++H Sbjct: 122 LARNQWNLRPTKLPDVCRHLGLDLNH 147 >gi|225020189|ref|ZP_03709381.1| hypothetical protein CORMATOL_00191 [Corynebacterium matruchotii ATCC 33806] gi|224946933|gb|EEG28142.1| hypothetical protein CORMATOL_00191 [Corynebacterium matruchotii ATCC 33806] Length = 367 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 29/147 (19%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + ++TTG+ +++ I AV L + + F L + P +HG++ E Sbjct: 15 VAVTVKTTGIHPSTAQLVVIDAVVLTASGEPDSDFHAVLS---VPDDPGPKHMHGLSREE 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL------------------- 110 + D SFSSI + + I HN GFI+ E Sbjct: 72 IADGKSFSSILKALGKTIDGRT--MITHNVPLVWGFIHKEARRAMTAAARANRRRGSRGK 129 Query: 111 ----QRINKDPLDPSRIIDTLSIARRK 133 QR+ P P I+D L+ ARR+ Sbjct: 130 PRRRQRVGHVP-RPVGIVDMLATARRR 155 >gi|160689446|gb|ABX45581.1| polymerase C [Bacillus atrophaeus] Length = 259 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 5/92 (5%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +R+ K + +IDTL + R +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNVVYKRLLKVEKAQNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190 + D+ + +KM+ ++ I + + NE+ Sbjct: 59 IYDAEATGYLLLKMLKDAAEKDIQYHDQLNEN 90 >gi|315179445|gb|ADT86359.1| DNA polymerase III, epsilon chain [Vibrio furnissii NCTC 11218] Length = 224 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 15/171 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 DIET+GLD+++D I+ IG V +++ + FL ++ P+ + LH I + + Sbjct: 37 LDIETSGLDAEHDHIVSIGWVPIVNQVIRLAEARYFLITPSGQDDPQQVVLHHIMPQMQR 96 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI-- 129 + F + +AH + + FI+ +Q+ + P P +DTL I Sbjct: 97 QGIPLAQAIELL--FTQLKGKVLLAHGSVVERQFIHHFMQQ-HGWPDLPIVWLDTLKIEQ 153 Query: 130 -----ARRKHP-SSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 A P S+ ND L+++ KRY + H AL D+ +++Y+ Sbjct: 154 AYAQYAPYNTPHSNANDWRLSTVRKRYHLPA--YQAHHALSDAIATAELYL 202 >gi|87121437|ref|ZP_01077326.1| DNA polymerase III subunit epsilon [Marinomonas sp. MED121] gi|86163280|gb|EAQ64556.1| DNA polymerase III subunit epsilon [Marinomonas sp. MED121] Length = 242 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 18/168 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D+ETTGL S+ D I+ +G+V + + ++ G S +++ +H +T Sbjct: 56 IALDLETTGLKSQKDTIVSVGSVAMNAKRIRCASSNYWVVNPGAPLSAQSITIHELTHSD 115 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128 ++ P S F D + + H A + F+ +++ +D P ++DTL+ Sbjct: 116 VEQAPPLSRYFEAILDALAGKVV--VVHCAAIERQFLYQAAKKLYGQDLFFP--VLDTLA 171 Query: 129 I-----------ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 + AR ++ L++ +RYG + H AL D++ Sbjct: 172 LEQKILKQRPLMARMFRGNTSVRLDACRQRYG--LPRYKAHHALTDAY 217 >gi|197261475|ref|YP_002154290.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage LMA2] gi|197244565|emb|CAR31299.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage LMA2] Length = 184 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 75/180 (41%), Gaps = 24/180 (13%) Query: 11 VFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 V+D ETTGL K RIIE V + D K + F+C G K+ Sbjct: 5 VWDTETTGLPFHQRVSLRKQPRIIEFAGV-ITDGEKILDEVE-FICNPGIVIEEIITKIT 62 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-------INKD 116 G+ +E L PSF + DFF+ +A IAHN FD + +L R +N Sbjct: 63 GLKNEDLIKHPSFLDQRQKVRDFFSRADAN-IAHNLPFDKFMLTCDLARGKFGLDEVNFP 121 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 LD + ++ + R L L + Y + KH AL D LL +V +M V Sbjct: 122 SLDICTVEESAPLF-----GHRMRLQHLYEHY--CGPYVQKHRALDDVRLLHEVCKRMGV 174 >gi|86134050|ref|ZP_01052632.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] gi|85820913|gb|EAQ42060.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] Length = 275 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 32/179 (17%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS------PE----- 58 + FD+ETTG++ DRI+EI +++ PNG K S PE Sbjct: 10 VFFDLETTGVNIATDRIVEISILKVF--------------PNGNKESKTWLVNPEIEIPQ 55 Query: 59 -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD- 116 A +HGIT+E + +P+F + + + + N +FD+ + EL R D Sbjct: 56 GATDVHGITNEKVVTEPTFKELAGKVSEMIAGCDLAGFNSN-RFDIPLLAEELMRAGIDF 114 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + ID I +K + S ++ HGA D++ ++ + + Sbjct: 115 DMQNRKAIDVQVIFHKKEQRTL----SAGYQFYCGKELEGAHGAEADTNATYEILLAQV 169 >gi|304413849|ref|ZP_07395266.1| ribonuclease T [Candidatus Regiella insecticola LSR1] gi|304283569|gb|EFL91964.1| ribonuclease T [Candidatus Regiella insecticola LSR1] Length = 210 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 18/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET+G D++ + ++EI AV L + T + P G ++L +G Sbjct: 20 VVIDVETSGFDAQTNALLEIAAVTLQMNDGGWLHPAETLHFHVAPFEGAILEQKSLSFNG 79 Query: 65 ITDE-----FLKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR---I 113 I + + + + +IF + A +AHNA FD F+ A +R I Sbjct: 80 INLDNPLRGAISEHKALQTIFETVKKRMKGEGCTRAVVVAHNATFDHRFVMAAAERTGLI 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P DT +++ + L C GI H AL D+ + ++ + Sbjct: 140 KHNPFHSFVTFDTAALSALV--LGQTVLAKACLEAGIDFESSQAHSALYDTKQTAKLFCE 197 Query: 174 MM 175 ++ Sbjct: 198 LV 199 >gi|154507795|ref|ZP_02043437.1| hypothetical protein ACTODO_00277 [Actinomyces odontolyticus ATCC 17982] gi|153797429|gb|EDN79849.1| hypothetical protein ACTODO_00277 [Actinomyces odontolyticus ATCC 17982] Length = 250 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 21/183 (11%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-------FQVFLCPNGRKNSPEALKLHG 64 FD ETTG+ + DR++ GA+ L + R+ +L G + +A +HG Sbjct: 11 FDTETTGVRALKDRLV-TGALVLRIDGASYRSGVSAPDQVATWLTDPGVEIPEQATAVHG 69 Query: 65 ITDEFL-KDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD- 119 IT E +D + E E + +A NA +D+ +N EL+R + Sbjct: 70 ITTEQARRDGRPIEEVLHELAGSIVEHWLRGYPVVAFNATYDITLVNQELRRHRLGSFEE 129 Query: 120 -----PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P I+D L + R+ + + L + YG ++ H A +D + DV Sbjct: 130 RLEGAPMLIVDPLVLDRKLDRFRKGKKTLTEMAPVYG-AVASPDAHTAEVDVAMTLDVLA 188 Query: 173 KMM 175 M+ Sbjct: 189 GMV 191 >gi|260777448|ref|ZP_05886342.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260607114|gb|EEX33388.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 239 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 11/124 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLDS+ D II IG V L+ N+ + P ++ + E++ +HGIT Sbjct: 50 LAMDFETTGLDSEQDDIITIGTVPFNLNRIFINQAHHWTVRPR-QQLAEESVIIHGITHS 108 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFINAELQ-RINKDPLDPSRIID 125 + D P SE +D EQ A + H + + F + L+ RIN+ P ++D Sbjct: 109 DILDAPD----LSEVYDQVLEQMAGKIMVVHYQRIEREFFDRALKDRINEGIEFP--VVD 162 Query: 126 TLSI 129 T+ + Sbjct: 163 TMHL 166 >gi|83647725|ref|YP_436160.1| putative exonuclease [Hahella chejuensis KCTC 2396] gi|83635768|gb|ABC31735.1| putative exonuclease [Hahella chejuensis KCTC 2396] Length = 230 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65 +R + D+ETTGL+ K D +I IGAVE+ D S ++F++ + + S L +HG+ Sbjct: 34 IRWVAADVETTGLNIKKDVVIAIGAVEINDLSICLEQSFELLIDADTHLESDNIL-IHGL 92 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 + + L F + A +A +A FD + E Sbjct: 93 SQQTLSQGAHPKEAIHSFLSY--AHGAALLAFHAPFDKAMLEKE 134 >gi|62390951|ref|YP_226353.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease [Corynebacterium glutamicum ATCC 13032] gi|41326290|emb|CAF20452.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease [Corynebacterium glutamicum ATCC 13032] Length = 476 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 19/101 (18%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-------- 61 + FD+ET D + I +IG V+ +D + + +LC PE+L Sbjct: 125 VGFDVETANDDWGS--ICQIGLVKYVD--GVEESSESWLC-----TPPESLNFFNEINIG 175 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 +HGIT E + D+P F+ + + +F + +AHNA+FD Sbjct: 176 IHGITPEMVADQPRFADLVPKMVEFVG--DLPLVAHNAQFD 214 >gi|326335468|ref|ZP_08201655.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692234|gb|EGD34186.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 453 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 9/160 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI A+ D ++ F + P + + A L GI+++ + Sbjct: 4 ILDIETTGGKLNEESITEI-AIYRFDGNEVTDRFISLINPEKKIDDFVA-HLTGISNKMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P F + + + +AHNA FD + E +R+ D I T+ ++ Sbjct: 62 RNAPKFYEVAKRIIEITD--GCIIVAHNAAFDYRILRLEFRRLGFD--FHRNTICTVEMS 117 Query: 131 RRKHPS-SRNDLNSLCKRYGITI--SHRSKHGALLDSHLL 167 +R P S L L + GI + HR+ A+ HL Sbjct: 118 QRLLPQESSYSLGKLTRSLGIPLLGRHRANGDAMATVHLF 157 >gi|25028571|ref|NP_738625.1| putative DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] gi|23493856|dbj|BAC18825.1| putative DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] Length = 569 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 7/95 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGITD 67 + FD+ET D + I +IG V + + + T F P N P + +HGIT Sbjct: 202 VAFDVETANDDWGS--ICQIGLVRYENGVEVDST-SWFCTPPEPLNFFEPANIAIHGITA 258 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 E + +P+F+ + + DF + +AHNA+FD Sbjct: 259 EQVAGEPAFAEVLPKMVDFVGD--LPLVAHNAQFD 291 >gi|300722831|ref|YP_003712123.1| RNase T [Xenorhabdus nematophila ATCC 19061] gi|297629340|emb|CBJ89939.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Xenorhabdus nematophila ATCC 19061] Length = 211 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 17/170 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LD---YSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G +++ D ++EI A+ L +D + T + P G P AL G Sbjct: 12 VVIDVETAGFNARTDALLEIAAITLKMDENGWLMPADTLHFHVDPFEGANLDPAALAFTG 71 Query: 65 I--TDEF---LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQR--IN 114 I T+ + + + +IF + N A +AHNA FD F+ A +R + Sbjct: 72 IDPTNPLRGAVSEYTALHAIFKMIRKGMKDTNCNRAIMVAHNASFDHNFVMAAAERSGLK 131 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + P P DT +++ + L C I H AL D+ Sbjct: 132 RIPFHPFATFDTAALSGLV--LGQTILAKACITAEIPFDSDQAHSALYDT 179 >gi|256027838|ref|ZP_05441672.1| exonuclease, RNase T and DNA polymerase III [Fusobacterium sp. D11] gi|289765790|ref|ZP_06525168.1| exonuclease [Fusobacterium sp. D11] gi|289717345|gb|EFD81357.1| exonuclease [Fusobacterium sp. D11] Length = 191 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 25/173 (14%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLH 63 M KI+F D ET G++ + +I++ + +D K F ++ P N N +AL++ Sbjct: 1 MNKIIFIDTETGGVNPEKSALIQLSGIIRID-KKDVEKFNFYIKPFENSEVNE-KALEVQ 58 Query: 64 GIT------DEFLKDKP---SFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQR- 112 G T ++++++K F ++ ++ D +++ + +A +N +FDV + A QR Sbjct: 59 GRTLDELKAEKYIEEKEVYKQFINLLDKYIDKYDKTDKFIVAGYNVRFDVDILKALFQRH 118 Query: 113 --------INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI-SHRS 156 ++ LDP I L IA N L + CK +GI + +H S Sbjct: 119 GNNFLFSYLDSSMLDPLYSIRLLQIAGILPVLENNKLETWCKHFGIELKAHDS 171 >gi|187927567|ref|YP_001898054.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J] gi|187724457|gb|ACD25622.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12J] Length = 216 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLD + D II IGAV ++ + T++ ++ + P G + PE++ +H + + Sbjct: 39 VALDCETTGLDVRTDEIISIGAVRIVGNRILTSQRLELLIRPQG-EMRPESICVHRLRNR 97 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 L S F + + + +FDV +N Sbjct: 98 DLDSGVSIEQAVHTLLHFIGSRPL--VGYYLEFDVAMLN 134 >gi|330804144|ref|XP_003290058.1| hypothetical protein DICPUDRAFT_80810 [Dictyostelium purpureum] gi|325079812|gb|EGC33394.1| hypothetical protein DICPUDRAFT_80810 [Dictyostelium purpureum] Length = 526 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 19/121 (15%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++K + D ETTGL S N IIE+ L Y K+N T + +PE+ Sbjct: 239 QSKCNIFILDSETTGLTS-NAEIIELSCACLNGEAFYRKSNPTISI---------TPEST 288 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE------WIAHNAKFDVGFINAELQRIN 114 K++ +T L + + EF++F +Q+++ IAHN K+D G I+ L + Sbjct: 289 KINNLTSHDLAGHQYWEKVEEEFFNFIVQQSSDDDAPIYIIAHNEKYDRGRISFHLAKST 348 Query: 115 K 115 K Sbjct: 349 K 349 >gi|325279480|ref|YP_004252022.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] gi|324311289|gb|ADY31842.1| Exonuclease RNase T and DNA polymerase III [Odoribacter splanchnicus DSM 20712] Length = 190 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 12/115 (10%) Query: 10 IVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 + FD ETTGL + + R++++ + D + V + P G PEA Sbjct: 3 LFFDTETTGLPKRWNAPVTDLENWPRLVQLAWIMYDDRGNMLESRDVIVKPEGFTIPPEA 62 Query: 60 LKLHGITDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 ++HGIT ++K + +F +E A + HN FD + AE +R+ Sbjct: 63 SRVHGITTLVAREKGEPLQEVMEQFARKIDEATA-LVGHNISFDECIVGAEFERL 116 >gi|312898045|ref|ZP_07757451.1| DNA polymerase III subunit epsilon domain protein [Megasphaera micronuciformis F0359] gi|310620870|gb|EFQ04424.1| DNA polymerase III subunit epsilon domain protein [Megasphaera micronuciformis F0359] Length = 184 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 8/148 (5%) Query: 24 DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83 D + AV + S + + + P R + + +++HGIT + + KP+F +++ + Sbjct: 17 DSACSLAAVSIAGQSVMHEGYTLIKPPFNRFDE-DNIRIHGITPQMVSAKPTFDALWPDI 75 Query: 84 WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LN 142 N++ IAH A FD + + ++R N L+ S T+ I+R+ P N L+ Sbjct: 76 RKRLNKR--ILIAHYAVFDTRVLRSLIKRYNLPGLNASYAC-TVEISRKVWPDLPNHKLD 132 Query: 143 SLCKRYGITISHRSKHGALLDSHLLSDV 170 ++ G T H H AL D+ + + Sbjct: 133 TVAGHLGFTFRH---HQALDDARACARI 157 >gi|88859048|ref|ZP_01133689.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas tunicata D2] gi|88819274|gb|EAR29088.1| putative DNA polymerase, exonuclease activity [Pseudoalteromonas tunicata D2] Length = 210 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 15/184 (8%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCP-NGRKNSPEALKLH 63 + + +V D+E TGLD K D I+ + + + + R+ C N K SP H Sbjct: 25 RAKYLVIDLELTGLDPKVDEIVSLAWLPIEEQRIIVGRSEHFINCEVNELKQSP---IFH 81 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI +K E ++ + HNA+ D F+ A Q N L S + Sbjct: 82 GIDRFAVKGGVPLRQALLELQPLLDDH--VLVFHNAELDWAFLKAAFQNANL-LLSSSVM 138 Query: 124 IDTLSIARRK-----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--V 176 +DT+ I ++ H + +DLN R + H AL D+ +++++ + + Sbjct: 139 LDTMKIEYKRLMNQGHEIASDDLNLARCRSRYQLPEYLTHNALTDALATAELFLAQLNQI 198 Query: 177 GGSQ 180 G++ Sbjct: 199 AGAK 202 >gi|23308895|ref|NP_601316.2| DNA polymerase III epsilon subunit [Corynebacterium glutamicum ATCC 13032] gi|21324886|dbj|BAB99509.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases [Corynebacterium glutamicum ATCC 13032] Length = 381 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 19/101 (18%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-------- 61 + FD+ET D + I +IG V+ +D + + +LC PE+L Sbjct: 30 VGFDVETANDDWGS--ICQIGLVKYVD--GVEESSESWLC-----TPPESLNFFNEINIG 80 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 +HGIT E + D+P F+ + + +F + +AHNA+FD Sbjct: 81 IHGITPEMVADQPRFADLVPKMVEFVG--DLPLVAHNAQFD 119 >gi|304437456|ref|ZP_07397414.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369506|gb|EFM23173.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 219 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 36/181 (19%) Query: 7 MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M+ IV D+E + + N IIEIGAV L + FQ ++CP Sbjct: 1 MKHIVVDLEMNPVGKEYRDVRRKLNGEIIEIGAVRLNEDFVQEDEFQCYVCPEYGMVKKH 60 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAK------------FDV 103 +L GIT E + P+F+ F F + E + W + K FDV Sbjct: 61 ITELTGITQEKVAGHPAFADSFHAFVVWIGEAETKIYSWSMSDIKQLRKECRLKLPDFDV 120 Query: 104 GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 +++A + ++ D + ++L++ ++ L ++ +R+ S+H AL D Sbjct: 121 TWLDARWVDLQQEFDDRLGLHNSLAL--------KHALGAMGRRF-----EGSQHSALAD 167 Query: 164 S 164 + Sbjct: 168 A 168 >gi|194476704|ref|YP_002048883.1| possible DNA polymerase III, epsilon subunit [Paulinella chromatophora] gi|171191711|gb|ACB42673.1| possible DNA polymerase III, epsilon subunit [Paulinella chromatophora] Length = 302 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 12/164 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETT L + IEIGA+ + + FL P +N+P + L+GI+ E Sbjct: 79 LILDTETTSLSPTDGNCIEIGAILFHLRHRATLSQIAFLLPC--ENNP-SYSLNGISAET 135 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-LQRINKDPLDPSRIID-TL 127 + + + S F E + +AHNA FD + + L INK L + I+ + Sbjct: 136 TRLIYPWEAGLSYFLTLV-ESSDLIVAHNASFDRQWFGIDPLPIINKPWLCSMQDINWPV 194 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + R +PS R+ L YG+ + S H AL D +S V+ Sbjct: 195 QRSLRSNPSIRD----LALAYGVPV--WSTHRALTDCLYMSQVF 232 >gi|145296078|ref|YP_001138899.1| hypothetical protein cgR_2000 [Corynebacterium glutamicum R] gi|140845998|dbj|BAF54997.1| hypothetical protein [Corynebacterium glutamicum R] Length = 467 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 19/101 (18%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-------- 61 + FD+ET D + I +IG V+ +D + + +LC PE+L Sbjct: 116 VGFDVETANDDWGS--ICQIGLVKYVD--GVEESSESWLC-----TPPESLNFFNEINIG 166 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 +HGIT E + D+P F+ + + +F + +AHNA+FD Sbjct: 167 IHGITPEMVADQPRFADLVPKMVEFVG--DLPLVAHNAQFD 205 >gi|213609103|ref|ZP_03368929.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 89 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 8/89 (8%) Query: 153 SHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKP 211 S R+ HGALLD+ +L++VY+ M G + + F + R ++ + T+ I R + Sbjct: 3 SKRTLHGALLDAQILAEVYLAMTGGQTSMTFAMEGETQR--QQGEATIQRIVRQASRLRV 60 Query: 212 LFTRITKEELDEHDK---TIQTLGKNAIW 237 +F ++EEL H+ +Q G + +W Sbjct: 61 VFA--SEEELAAHESRLDLVQKKGGSCLW 87 >gi|259507628|ref|ZP_05750528.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] gi|259164807|gb|EEW49361.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] Length = 494 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 7/95 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGITD 67 + FD+ET D + I +IG V + + + T F P N P + +HGIT Sbjct: 127 VAFDVETANDDWGS--ICQIGLVRYENGVEVDST-SWFCTPPEPLNFFEPANIAIHGITA 183 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 E + +P+F+ + + DF + +AHNA+FD Sbjct: 184 EQVAGEPAFAEVLPKMVDFVG--DLPLVAHNAQFD 216 >gi|323143315|ref|ZP_08078006.1| ribonuclease T [Succinatimonas hippei YIT 12066] gi|322416932|gb|EFY07575.1| ribonuclease T [Succinatimonas hippei YIT 12066] Length = 251 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 19/181 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKN-SPEALKLHG 64 +V D+ET G + + D ++E+ + + Y + + + P N P + G Sbjct: 33 VVVDVETAGFNPETDALLEVAMMTMTMDDNGYLQPDEIMSANIRPFPNSNIEPSNIAFLG 92 Query: 65 I---------TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114 I DE + P F +I S+ A + HN FD+ FI+A +R+N Sbjct: 93 IDPFDESRNLQDERVAVLPMFKAI-SKKMKKEGCTRAILVGHNGFFDLSFIHALAKRLNY 151 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P + DT S+A + + L C GI HGA D+ + ++ Sbjct: 152 KRCPFHQFTVFDTASLAGLVY--GQTVLARACTAAGIEFEDDKAHGAKYDTLMECKLFCS 209 Query: 174 M 174 + Sbjct: 210 I 210 >gi|257068061|ref|YP_003154316.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Brachybacterium faecium DSM 4810] gi|256558879|gb|ACU84726.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Brachybacterium faecium DSM 4810] Length = 238 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 12/151 (7%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTG + DRI+ + V + + T +L + A ++HGI+ E + Sbjct: 16 FDTETTGTNVARDRIVTVALVHSVGPGREGETVATWLIDPEMEIPEPAQRVHGISTEHAR 75 Query: 72 DKP-SFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPL------DPS 121 + E E A+ +A N FD+ + EL R+ L D + Sbjct: 76 AHGMKAAEALDEVAALIAEALAKEVPLVAFNISFDLAILENELTRLGLPTLAQRLGHDIA 135 Query: 122 RIIDTLSIARR--KHPSSRNDLNSLCKRYGI 150 +ID L I R ++ + L + YG+ Sbjct: 136 PVIDALVIDRGVDRYRKGKRTLTDVLAHYGL 166 >gi|260772908|ref|ZP_05881824.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] gi|260612047|gb|EEX37250.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] Length = 238 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 23/171 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD D II IG V + Q ++ +K ++ +HGIT Sbjct: 49 VAMDFETTGLDENKDEIITIGLVPFTLQRVYLKRAQHWIVRPRQKLDEGSVIIHGITHSD 108 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128 + P S +F + +AH K + F++ + RIN+ P IIDT+ Sbjct: 109 IMHAPDLSEVFEALLTALEGKIV--VAHYHKIEREFLDQAFKRRINEGIEFP--IIDTMQ 164 Query: 129 IA---------------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + R K P S L +RYG+ + H AL D+ Sbjct: 165 LEAEIQKRLTAGIWNKLRGKKPQSLR-LGQARQRYGLPAY--NPHHALTDA 212 >gi|313896094|ref|ZP_07829648.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430] gi|320529365|ref|ZP_08030453.1| exonuclease [Selenomonas artemidis F0399] gi|312975519|gb|EFR40980.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430] gi|320138331|gb|EFW30225.1| exonuclease [Selenomonas artemidis F0399] Length = 179 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 16/172 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD ETTG S +D ++ + V+ + + + P +K P+A K++ I+ Sbjct: 6 LVFDTETTGFRS-DDEVLTLAVVDGAGKTVVDGMY----APVSKKEWPDAEKVNRISPAM 60 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D + +E FN+ + +N +FD+ + RI +P+R L+ Sbjct: 61 VADCAPILTHRAELERLFNDPETLLVGYNIEFDIRLLGQSGIRIT----NPNRHDVMLAF 116 Query: 130 AR-RKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + RK P +R L + Y HGAL D+ Y +M Sbjct: 117 SEMRKVPDARRGGYRWWKLTECAEYYRYNWGTTEAHGALADTLATLYCYDQM 168 >gi|120598470|ref|YP_963044.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. W3-18-1] gi|120558563|gb|ABM24490.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. W3-18-1] Length = 223 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 15/162 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+E TGLD D+I+ IG V +++ + R + ++ +HGI D Sbjct: 38 MAMDLEMTGLDPLQDQILSIGLVP-IEHGVIPLEGALQKLVQIRGSVGQSATIHGILDNH 96 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128 L + + W + +AH++ D F+ ++ I ++ PS IDTL Sbjct: 97 LVQAVTIEDAMA--WFIAKTRGRVLVAHHSPLDCRFLQQDILAIYHQAVFLPS--IDTLM 152 Query: 129 IARRK-----HPSSRNDLN-SLCK-RYGITISHRSKHGALLD 163 + +R+ H L C+ RYG+ + S H AL D Sbjct: 153 LEKRRLLRGHHAIKEGSLRLGACRERYGLPVY--SAHSALTD 192 >gi|238927543|ref|ZP_04659303.1| possible exonuclease [Selenomonas flueggei ATCC 43531] gi|238884825|gb|EEQ48463.1| possible exonuclease [Selenomonas flueggei ATCC 43531] Length = 219 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 8/91 (8%) Query: 7 MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M+ IV D+E + + N IIEIGAV L + FQ ++CP Sbjct: 1 MKHIVVDLEMNPVGKEYRDVRRKLNGEIIEIGAVRLNEDFVQEDEFQCYVCPEYGMVKKH 60 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNE 89 +L GIT E + P+F+ F F + E Sbjct: 61 ITELTGITQEKVAGHPAFADSFHAFVAWIGE 91 >gi|327183531|gb|AEA31978.1| hypothetical protein LAB52_05120 [Lactobacillus amylovorus GRL 1118] Length = 298 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 11/159 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 I D+ETTGL++ +II IGA++ + F + N + PE + +L G+T + Sbjct: 131 IAVDLETTGLNTSRSKIISIGAIK-ENLKGEEEQFYRLIKIN--EAIPEKITELTGLTSK 187 Query: 69 FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L ++ + +EF F + + +N FD F+ I + L S + D + Sbjct: 188 VLNERGVTLEQALNEFRKFVGSEMI--VGYNLSFDNNFLLKAYLSIGQRALVNS-MKDLM 244 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSH 165 I + K N DL ++ K YGI +R H AL D+ Sbjct: 245 GIVKEKDIFLDNYDLETVLKEYGIKNDNR--HNALSDAR 281 >gi|315650299|ref|ZP_07903371.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487410|gb|EFU77720.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 236 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 18/173 (10%) Query: 10 IVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67 I FD ETTG + D+IIE+ A+ + D + + F+ + P+ + +L GI+ Sbjct: 13 IFFDTETTGFHPERLDQIIELAAISI-DKTGRQQEMDEFIKLFRVQELPQQITELTGISS 71 Query: 68 EFL--KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDP-----LD 119 + L + K F+ + ++F D IAHNA+FD+ F+ + R NK+ + Sbjct: 72 DTLSAQGKDEFA-VLNKFIDMIQGNGKTLLIAHNAQFDLKFMAYAIHR-NKNKEWMQVFN 129 Query: 120 PSRIIDTLSIA--RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +DTL++ RR++P + L S +Y + ++ H A+ D L +V Sbjct: 130 DCDYLDTLTVYKDRRQYP---HRLESAIVQYHLINKVKNSHRAIDDCRALIEV 179 >gi|300855094|ref|YP_003780078.1| putative exonuclease [Clostridium ljungdahlii DSM 13528] gi|300435209|gb|ADK14976.1| predicted exonuclease [Clostridium ljungdahlii DSM 13528] Length = 202 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 8/113 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNSPEALKLHG 64 M I FD ETTGL N I ++ + + +K +T +F + + P A K+HG Sbjct: 1 MNMIFFDTETTGLRPGN--ICQLSYILVDTSAKPTKTIGKNIFFAVDYIE--PSAEKVHG 56 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNE-QNAE-WIAHNAKFDVGFINAELQRINK 115 T E L S + +F N+ QNA+ I HN FD+ F+++E + N+ Sbjct: 57 FTVETLYKLSSGMNFKDHLDEFLNDFQNADILIGHNVNFDIKFLSSEFKNCNE 109 >gi|71901523|ref|ZP_00683608.1| Ribonuclease T [Xylella fastidiosa Ann-1] gi|71728710|gb|EAO30856.1| Ribonuclease T [Xylella fastidiosa Ann-1] Length = 210 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 21/172 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-------QVFLCPNGRKNSPEALKL 62 +V D+ET G + + ++EI + + + T R + V P G P++L++ Sbjct: 23 VVVDVETGGFNWNHHALLEIACIPI-EMDDTGRLYPGEVTSTHVIPAP-GTDIDPKSLEV 80 Query: 63 HGITDE----FLKD-KPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI- 113 GI + F K+ K + IF+ + Q A + HNA FD+ F+NA + R Sbjct: 81 TGIILDHPFRFAKEEKLALEHIFTPVRATMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 140 Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 ++P + DT+++A + + L + G+ + H A+ D+ Sbjct: 141 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNAADAHSAVYDA 190 >gi|325288090|ref|YP_004263880.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489] gi|324323544|gb|ADY31009.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489] Length = 447 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 14/158 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGI 65 M + D+ETTG + ++I EI + D K F + P P + L GI Sbjct: 1 MMYTIIDVETTG---QTNKITEISIFKF-DGDKVVDEFTSLVNPEDV--IPYYITTLTGI 54 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + + P+F+ I + D ++ ++AHN FD I E + ++KD + + Sbjct: 55 DNAMVANAPTFAEIAQQVLDI--TEDTIFVAHNVNFDYNVIRNEFKAVDKD--FRRKKLC 110 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGA 160 T+ ++R+ P + L LCK I I HR++ A Sbjct: 111 TVRLSRKLLPGHNSYSLGKLCKDLDIAIEGRHRARGDA 148 >gi|288799990|ref|ZP_06405449.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] gi|288333238|gb|EFC71717.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] Length = 163 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET +S+ + IG V + + T+ +F + P S K+HG+T Sbjct: 5 VAIDFETA--NSERSSVCSIGIVIVRNGVITD-SFYSTIQPEPNYYSYWCTKVHGLTKSD 61 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P F I+ + N ++AHN++FD + A + D D DTL+ Sbjct: 62 TEESPCFHEIWKQIEPKIG--NLPFVAHNSRFDESCLKAVFRVYQMDYPD-YIFFDTLAA 118 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR P N L+++ + G + + H AL D+ + + ++++ Sbjct: 119 ARRVLPHLPNHQLHTVAQECGYCLD--NHHHALADAEACAHIAMQIL 163 >gi|315656881|ref|ZP_07909768.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492836|gb|EFU82440.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 240 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 15/153 (9%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTG+ + DRI + + ++ + + R ++ G P A +++G+TDE+L+ Sbjct: 19 FDTETTGVFTSRDRIATVSLIRRINGTDSPR---YWIINPGVPMPPAAGRVNGLTDEYLQ 75 Query: 72 DKPSFSSI-FSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPL------DPS 121 + E E + + N FD + AEL R N L Sbjct: 76 ANGVDPRVGLEEVAGIIEETMRRGVPVVGFNVTFDFAILEAELARHNLPTLRQRLEGSVG 135 Query: 122 RIIDTLSIAR--RKHPSSRNDLNSLCKRYGITI 152 I+D L + R ++ + +L S+C Y + + Sbjct: 136 PIVDPLVLDRILDRYRKGKRNLASVCTAYDLPL 168 >gi|88811452|ref|ZP_01126707.1| ribonuclease T [Nitrococcus mobilis Nb-231] gi|88791341|gb|EAR22453.1| ribonuclease T [Nitrococcus mobilis Nb-231] Length = 222 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 17/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSK---TNRTFQVFLCP-NGRKNSPEALKLHG 64 +V DIET GL++ D ++++ AV + +D K T+ + P +G P++L+ + Sbjct: 28 VVVDIETGGLNASTDALLQLAAVIVRMDEDKRVFPAGTYSTHVEPFDGANIDPKSLEFNR 87 Query: 65 I--TDEFLKDKPSFSSIFSEFWDFFNE------QNAEWIAHNAKFDVGFINAELQR--IN 114 I KP ++ F E A + HN+ FD+ F+NA + R I Sbjct: 88 IDPNHPLRMAKPEEEALRHIFRPIRREIRETGCTRAILVGHNSWFDLCFLNAAVARTGIR 147 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++P P DT ++ + L K G + R H A+ D+ ++++ + Sbjct: 148 RNPFHPFTSFDTATLGGLAF--GQTVLARAVKASGASWDGREAHSAIYDAEKTAELFCTI 205 Query: 175 M 175 + Sbjct: 206 V 206 >gi|300857574|ref|YP_003782557.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis FRC41] gi|300685028|gb|ADK27950.1| DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis FRC41] Length = 348 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 28/146 (19%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + I+T+G+ R+I + AV + + F + P ++P LHG++ E Sbjct: 23 VALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAVINPG---DNPGPFHLHGLSREE 79 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----------------- 112 + FS I + + I HN + GF+ +E +R Sbjct: 80 IAQGKKFSHILKPLGKLIDGRT--LILHNTPYTWGFLVSESRRTMSAAARANRNRYRHRN 137 Query: 113 -----INKDPLDPSRIIDTLSIARRK 133 + P P I+DTL+ ARR+ Sbjct: 138 RRRQRVGHIP-RPRMIVDTLATARRQ 162 >gi|16262589|ref|NP_435382.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021] gi|307319072|ref|ZP_07598502.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti AK83] gi|14523204|gb|AAK64794.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306895179|gb|EFN25935.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti AK83] Length = 325 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 18/111 (16%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-----SPEALK 61 +R ++ D ETTGLD++ IIEIG V Y++ V G + P+ + Sbjct: 68 LRGVILDTETTGLDARKCEIIEIGLVSFT-YNEEGEIGDVVAVYGGLQQPTIAIPPDITR 126 Query: 62 LHGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 L GITD + D + +I D IAHNA FD F A Sbjct: 127 LTGITDAMVAGQSIDIAAVQAIVGPA-DLI-------IAHNAGFDRPFCEA 169 >gi|15838737|ref|NP_299425.1| ribonuclease T [Xylella fastidiosa 9a5c] gi|24638168|sp|Q9PBJ8|RNT_XYLFA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|9107281|gb|AAF84945.1|AE004029_5 ribonuclease T [Xylella fastidiosa 9a5c] Length = 211 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 21/172 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-------QVFLCPNGRKNSPEALKL 62 +V D+ET G + + ++EI + + + T R + V P G P++L++ Sbjct: 24 VVVDVETGGFNWNHHALLEIACIPI-EMDDTGRLYPGEVTSTHVIPAP-GTDIDPKSLEV 81 Query: 63 HGITDE----FLKD-KPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI- 113 GI + F K+ K + IF+ + Q A + HNA FD+ F+NA + R Sbjct: 82 TGIILDHPFRFAKEEKLALEHIFTPVRATMKKYKCQRAILVGHNAHFDLNFLNAAVTRTA 141 Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 ++P + DT+++A + + L + G+ + H A+ D+ Sbjct: 142 YKRNPFHQFSVFDTVTLAGMAY--GQTVLARAVQAAGLDWNAADAHSAVYDA 191 >gi|315641337|ref|ZP_07896413.1| exonuclease [Enterococcus italicus DSM 15952] gi|315482910|gb|EFU73430.1| exonuclease [Enterococcus italicus DSM 15952] Length = 177 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI + +K P F ++ +FN + IAHNA FD G + L N + Sbjct: 50 IQIHGIKPQDVKTAPKFPEVWESIAQYFNPYSL-IIAHNAPFDNGVLAGCLDYYNLE--Q 106 Query: 120 PSRI-IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + +DT+ +R+ + + N LN++C I + + H AL DS +++ + Sbjct: 107 PHYLTLDTVRTSRKFYQNLPNHRLNTVCGYLDIPL--LNHHDALEDSRACAEILL 159 >gi|126641114|ref|YP_001084098.1| ribonuclease T [Acinetobacter baumannii ATCC 17978] Length = 172 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 5/88 (5%) Query: 91 NAEWIAHNAKFDVGFINAELQRI---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR 147 +A + HNA FD+GF+ A + R N++P ++DT++++ + L C + Sbjct: 72 HAVLVGHNAHFDLGFLQAAIARSGTKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQ 129 Query: 148 YGITISHRSKHGALLDSHLLSDVYIKMM 175 GI + H AL D+ ++++ ++ Sbjct: 130 AGIEFDGKEAHSALYDTQKTAELFCYIL 157 >gi|298252322|ref|ZP_06976124.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer DSM 44963] gi|297545742|gb|EFH79611.1| Exonuclease RNase T and DNA polymerase III [Ktedonobacter racemifer DSM 44963] Length = 471 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 14/100 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 FD ETTGLDS+ D+II+ +LL T + S A ++HGIT Sbjct: 26 TFDSETTGLDSE-DQIIQWAVCNQEGQLLGSGYIKPTVPI---------SEGAFEIHGIT 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 + L + P F+ + D + +N+ FD+G + Sbjct: 76 EAQLANAPLFAESWPTIRDLLTASGKTVVIYNSNFDIGML 115 >gi|110289067|gb|ABG66074.1| exonuclease family protein, putative, expressed [Oryza sativa Japonica Group] Length = 267 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 6/105 (5%) Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRIN 114 S +++ +GIT + + P+F + + + + W HN +FD+ I I Sbjct: 81 SAASVRCNGITRDAVAAAPAFRDVADAVYSVLHGR--VWAGHNIVRFDLARIREAFAEIG 138 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156 + P +P +IDTL + +K D+ SL +G+ SHRS Sbjct: 139 RPPPEPKGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRS 183 >gi|86358436|ref|YP_470328.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli CFN 42] gi|86282538|gb|ABC91601.1| probable DNA polymerase III, epsilon subunit protein [Rhizobium etli CFN 42] Length = 196 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 7/149 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + + +G + ++ + R + + P + S + +HGI Sbjct: 1 MKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++D P F + EF + + A IAHNA FD A L + + + + Sbjct: 58 PEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISH 154 L +A+R P + LN + + G+ H Sbjct: 115 LKMAQRIWPHFLSHRLNLIAEHLGLRFMH 143 >gi|306840939|ref|ZP_07473681.1| DNA polymerase III subunit epsilon [Brucella sp. BO2] gi|306289062|gb|EFM60324.1| DNA polymerase III subunit epsilon [Brucella sp. BO2] Length = 332 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ + E ++ G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE +K + +I + D IAHNA FD F+ Sbjct: 133 ITDEMVKGR----TIPRDELDALIAGADIIIAHNAGFDRPFLE 171 >gi|160689346|gb|ABX45531.1| polymerase C [Bacillus vallismortis] Length = 259 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +R+ + + +IDTL + R +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNVAYKRLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190 + D+ + + +KM+ ++ I + + NE+ Sbjct: 59 IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90 >gi|153832018|ref|ZP_01984685.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01] gi|148872016|gb|EDL70839.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01] Length = 249 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 17/186 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+++ D I+ IG V L + + + + PN R+ + E++ +HGITD Sbjct: 60 VSVDFETTGLNAEQDAILTIGLVPFTLGRVQCSGSRHWVVNPN-RELNEESVVIHGITDS 118 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRIIDTL 127 +K+ P I D + + H + F NA L + + P ++DTL Sbjct: 119 EVKNAPQLEQILDAILDELAGKIV--VVHYKNIERQFFNNALLNSLGEGIQFP--VVDTL 174 Query: 128 ----SIARRKHPSSRNDLNSLCKRYG-ITISH---RSKHGALLDSHLLSDVYIKMMVGGS 179 +I RR+ N L K+ G + + H R A H L+D + + Sbjct: 175 DIEYAIQRRECEGWLNKLKG--KKPGSVRLGHARERYHLPAYQPHHALTDALATAELLQA 232 Query: 180 QINFGF 185 Q+ + F Sbjct: 233 QLQYHF 238 >gi|257468536|ref|ZP_05632630.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans ATCC 49185] gi|317062795|ref|ZP_07927280.1| exonuclease [Fusobacterium ulcerans ATCC 49185] gi|313688471|gb|EFS25306.1| exonuclease [Fusobacterium ulcerans ATCC 49185] Length = 190 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 21/164 (12%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65 M+ + D ET GL+ K +I++ + +D K F F+ P + +AL++ G Sbjct: 1 MKILFIDTETGGLNPKESALIQLSGIVRID-KKDVEEFNFFIKPFAESEVNAKALEVQGR 59 Query: 66 TDEFL---KDKPS------FSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQR--- 112 T++ L K +P F I + D +++ + +A +N KFD+ + + +R Sbjct: 60 TEKELETEKYRPEKEVYTDFKKILDRYIDKYDKTDKFIVAGYNVKFDIDMLQSFFKRNGD 119 Query: 113 ------INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150 I+ LDP I L + N L + C+ +GI Sbjct: 120 NFLFSYISSSVLDPLPCIGMLQLCEVLPELKNNKLETWCEYFGI 163 >gi|153821463|ref|ZP_01974130.1| exonuclease family [Vibrio cholerae B33] gi|229509131|ref|ZP_04398618.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases [Vibrio cholerae B33] gi|229608803|ref|YP_002879451.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Vibrio cholerae MJ-1236] gi|126521063|gb|EAZ78286.1| exonuclease family [Vibrio cholerae B33] gi|229353888|gb|EEO18823.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases [Vibrio cholerae B33] gi|229371458|gb|ACQ61881.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Vibrio cholerae MJ-1236] Length = 301 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 9/103 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64 ++ D ETTGL ++++ IIE+G V++L R + L + K PE + +L G Sbjct: 53 VLLDTETTGLSAEDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITD+ ++ + S+ + + + +AHNA+FD F Sbjct: 113 ITDDMVQGQHIDDSLVAS----WLSDDPLVVAHNAQFDRPFFE 151 >gi|160689390|gb|ABX45553.1| polymerase C [Bacillus mojavensis] gi|160689392|gb|ABX45554.1| polymerase C [Bacillus mojavensis] gi|160689432|gb|ABX45574.1| polymerase C [Bacillus mojavensis] Length = 259 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +++ + + +IDTL + R +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNVAFKKLLQVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFNIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190 + D+ + + +KM+ ++ I + + NE+ Sbjct: 59 IYDTEATAYLLLKMLEDAAEKGIQYHDQLNEN 90 >gi|56692916|ref|YP_164280.1| exonuclease [Pseudomonas phage F116] gi|48527502|gb|AAT45877.1| exonuclease [Pseudomonas phage F116] Length = 201 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%) Query: 11 VFDIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +FD ETTG+ D I+E+ A+ T F+ + PNG + +PE + Sbjct: 5 IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEAIVRPNGWEITPEMTAI 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 HGI+ E D + E + N + A AHN FD Sbjct: 65 HGISHEQAMDVGISEAEALEGFLAINGRAARRAAHNISFD 104 >gi|254240149|ref|ZP_04933471.1| exonuclease [Pseudomonas aeruginosa 2192] gi|126193527|gb|EAZ57590.1| exonuclease [Pseudomonas aeruginosa 2192] Length = 201 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%) Query: 11 VFDIETTGL--------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +FD ETTG+ D I+E+ A+ T F+ + PNG + +PE + Sbjct: 5 IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEAIVRPNGWEITPEMTAI 64 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 HGI+ E D + E + N + A AHN FD Sbjct: 65 HGISHEQAMDVGISEAEALEGFLAINGRAARRAAHNISFD 104 >gi|254850923|ref|ZP_05240273.1| exonuclease family [Vibrio cholerae MO10] gi|21885332|gb|AAL59738.1| unknown [Vibrio cholerae] gi|254846628|gb|EET25042.1| exonuclease family [Vibrio cholerae MO10] gi|259156302|gb|ACV96248.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ind4] Length = 302 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 9/103 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64 ++ D ETTGL ++++ IIE+G V++L R + L + K PE + +L G Sbjct: 53 VLLDTETTGLSAEDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITD+ ++ + S+ + + + +AHNA+FD F Sbjct: 113 ITDDMVQGQHIDDSLVAS----WLSDDPLVVAHNAQFDRPFFE 151 >gi|189423312|ref|YP_001950489.1| exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ] gi|189419571|gb|ACD93969.1| Exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ] Length = 302 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-----SPEALKLHG 64 + D ETTGL+ D+IIE+G V T+ ++ G ++ S E + G Sbjct: 45 LCLDTETTGLNPACDKIIELGIVAFQYDPLTSGIIKIIGRYAGFEDPGIPLSAETTAITG 104 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 ITDE + + + D Q + IAHNA FD F+ A +K P S Sbjct: 105 ITDEMVSGQSFDDAQVCRLAD----QASLVIAHNAAFDRKFVEARFPVFSKVPWGCS 157 >gi|306846211|ref|ZP_07478773.1| DNA polymerase III subunit epsilon [Brucella sp. BO1] gi|306273462|gb|EFM55323.1| DNA polymerase III subunit epsilon [Brucella sp. BO1] Length = 332 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ + E ++ G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPAEITRITG 132 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE +K + +I + D IAHNA FD F+ Sbjct: 133 ITDEMVKGR----TIPRDELDALIAGADIIIAHNAGFDRPFLE 171 >gi|190892568|ref|YP_001979110.1| DNA polymerase III protein, epsilon subunit [Rhizobium etli CIAT 652] gi|190697847|gb|ACE91932.1| probable DNA polymerase III protein, epsilon subunit [Rhizobium etli CIAT 652] Length = 196 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 7/149 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + + +G + ++ + R + + P + S + +HGI Sbjct: 1 MKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++D P F + EF + + A IAHNA FD A L + + + + Sbjct: 58 PEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISH 154 L +A+R P + LN + + G+ H Sbjct: 115 LKMAQRIWPHFLSHRLNLIAEHLGLRFMH 143 >gi|297842185|ref|XP_002888974.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] gi|297334815|gb|EFH65233.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] Length = 506 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 24/160 (15%) Query: 12 FDIETTGLDSKNDR---IIEIGA--------VELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 FD+ET + +K+ + I+E GA VEL YS + + L K Sbjct: 16 FDLET-AVPTKSGQPFAILEFGAILVCPRKLVELYSYSTLVQPTDLSLISTLTK------ 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLD 119 + GIT + + P+FS I E +D + + W HN K FD I I P + Sbjct: 69 RRSGITRDGVLSAPTFSEIADEVYDILHGRI--WAGHNIKRFDCVRIRDAFAEIGLCPPE 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156 P ID+LS+ +K D+ SL +G+ +HRS Sbjct: 127 PKATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRS 166 >gi|254425359|ref|ZP_05039077.1| exonuclease family [Synechococcus sp. PCC 7335] gi|196192848|gb|EDX87812.1| exonuclease family [Synechococcus sp. PCC 7335] Length = 273 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 12/116 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVE--LLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITD 67 V D+ETTG N R+IE+ + L D + ++ + N + PE + ++ GIT Sbjct: 33 VVDVETTGALGHNARVIEVSVLHASLADGLEHQESYLI----NPQVKIPEYITRITGITP 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLD 119 E + P I+ + E + + AHN FD F+ E +R+ K PL Sbjct: 89 EMVYSSPPPEEIWPKCQPLL-EGDRVFTAHNLDFDYSFLRTEYKRLGIRFYKPPLQ 143 >gi|169347300|ref|ZP_02866238.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552] gi|169293917|gb|EDS76050.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552] Length = 261 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 11/147 (7%) Query: 6 KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLH 63 K + +V D ETTG++ ND ++++ V D N LC P + P A +++ Sbjct: 2 KNKYVVLDFETTGVNRYHNDEVVQVAIVNQDDEVLINE-----LCKPKHHFSWPSAQRIN 56 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPL-DPS 121 GI+ +KDK F S + F+ N+E+I +N F+ G + I+K DP Sbjct: 57 GISPLMVKDKLCFESYIDRIIEIFD--NSEFIVCYNIAFEQGMLKNYGIDISKYVFKDPM 114 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRY 148 + + R H + S C +Y Sbjct: 115 KDFAYIYGERGYHGGYKWQSLSTCAKY 141 >gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL Brener] gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma cruzi] Length = 1417 Score = 42.4 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFDIE+TGL++ D IIEI A + ++ + +F + P R E + +H ITD Sbjct: 774 RLVVFDIESTGLNTATDAIIEIAAWDPVEAT----SFSSLVDPE-RSIPQETMAIHHITD 828 Query: 68 EFLKDKPSFSSI 79 ++ P + Sbjct: 829 GMVRGAPRLPEV 840 >gi|297571869|ref|YP_003697643.1| exonuclease RNase T and DNA polymerase III [Arcanobacterium haemolyticum DSM 20595] gi|296932216|gb|ADH93024.1| Exonuclease RNase T and DNA polymerase III [Arcanobacterium haemolyticum DSM 20595] Length = 228 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 19/156 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDE 68 + FD ETTG+D +R++ +V +++ R + +L G +A +HGI T++ Sbjct: 8 VGFDTETTGVDPTRERLV-TASVVVVEEDGVTRHY--WLADPGVDIPLQASNVHGISTEQ 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRIN--------KDP 117 ++ + E D + A +A NA +D+ + EL+R P Sbjct: 65 ARREGEPVEKVLGEVADLLVQHMAAGHPVVAFNASYDLTLMECELERHGLPTLAERLGGP 124 Query: 118 LDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGIT 151 + P +ID + R ++ + L +L + YG+ Sbjct: 125 VGP--VIDPYMLDRSVDRYRRGKRRLENLAEHYGVA 158 >gi|259156611|gb|ACV96554.1| exonuclease, RNase T and DNA polymerase III [Vibrio fluvialis Ind1] Length = 301 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 9/103 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64 ++ D ETTGL + ++ IIE+G V++L R + L + K PE + +L G Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE ++ + ++ + + + +AHNA+FD F Sbjct: 113 ITDEMVQGQHIDDALVAS----WLSDDPLVVAHNAQFDRPFFE 151 >gi|218148597|ref|YP_002364365.1| hypothetical protein PP141_gp57 [Pseudomonas phage 14-1] gi|218059793|emb|CAU13913.1| hypothetical protein [Pseudomonas phage 14-1] gi|294663797|gb|ADF29351.1| putative DNA polymerase III epsilon subunit [Pseudomonas phage JG024] Length = 184 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 74/180 (41%), Gaps = 24/180 (13%) Query: 11 VFDIETTGLD-------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 V+D ETTGL K RIIE V + D K + F+C G K+ Sbjct: 5 VWDTETTGLPFHQRVSLRKQPRIIEFAGV-ITDGEKILDEVE-FICNPGIVIEEIITKIT 62 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-------INKD 116 G+ +E L PSF + DFF +A IAHN FD + +L R +N Sbjct: 63 GLKNEDLIKHPSFLDQRQKVRDFFARADAN-IAHNLPFDKFMLTCDLARGKLGLEEVNFP 121 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 LD + ++ + R L L + Y + KH AL D LL +V +M V Sbjct: 122 SLDICTVEESAPLF-----GHRMRLQHLYEHY--CGPYVQKHRALDDVRLLHEVCKRMGV 174 >gi|116671124|ref|YP_832057.1| exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24] gi|116611233|gb|ABK03957.1| Exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24] Length = 337 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI E + P F +F E F AHNA FD+G I + L+ ++ P Sbjct: 55 VRIHGIRPEDVAGLPRFGELFPEIGAFIGGDV--LAAHNAAFDLGVIRSALE-VSGLPGP 111 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + T+ ++RR + N L + G+ + + H A D+ + + I + Sbjct: 112 AYDYVCTVMLSRRCYSLVSNSLPYAAEEAGVPLVN--HHDAAEDARACAGILIDI 164 >gi|78779006|ref|YP_397118.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9312] gi|78712505|gb|ABB49682.1| DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9312] Length = 259 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 34/204 (16%) Query: 6 KMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLH 63 K+ KI + D ETTGLD D +IEIG + L D S QV FL P N+ EA ++ Sbjct: 34 KIEKILILDTETTGLDENKDEVIEIGCI-LFDVSFKCVLSQVSFLLP---VNNNEAEHVN 89 Query: 64 GITDEF------LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKD 116 I+ E +D +F + DF +AHN +FD F L +NK Sbjct: 90 CISAEVTNISQPWEDGLNFFLKLVDCSDFI-------VAHNVEFDKKWFGKGRLPMLNKK 142 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK--- 173 + +D ++ + +K +R + L + I + + H AL D +S+V+ K Sbjct: 143 WICS---LDDINWSFQKSLKTRPSVTDLALSFSIPVWNL--HRALSDCFYISEVFKKCDN 197 Query: 174 ---MMVGGSQINFGFK---TNEDR 191 +++ ++ F +K + EDR Sbjct: 198 LEELLLKATEPRFLYKALVSYEDR 221 >gi|15451563|gb|AAK98687.1|AC021893_21 Putative exonuclease [Oryza sativa Japonica Group] gi|31432001|gb|AAP53700.1| exonuclease family protein, putative, expressed [Oryza sativa Japonica Group] Length = 493 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 6/105 (5%) Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRIN 114 S +++ +GIT + + P+F + + + + W HN +FD+ I I Sbjct: 81 SAASVRCNGITRDAVAAAPAFRDVADAVYSVLHGR--VWAGHNIVRFDLARIREAFAEIG 138 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156 + P +P +IDTL + +K D+ SL +G+ SHRS Sbjct: 139 RPPPEPKGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRS 183 >gi|27379228|ref|NP_770757.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] gi|27352379|dbj|BAC49382.1| blr4117 [Bradyrhizobium japonicum USDA 110] Length = 223 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 35/170 (20%), Positives = 78/170 (45%), Gaps = 8/170 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL+ + D ++ I A+++ + T+ F+ + P+ + EA+K+H + Sbjct: 33 VVIDCETTGLNVRTDNVVAIAAIKIRGNRILTSARFEAIVHPDSELEA-EAIKIHRLRRS 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + F F + I + FD+ ++ + + L RI + Sbjct: 92 DVEASPIVWKVLPGFLHFIGPR--PLIGYYVDFDIAMLDKYILPLVGIELPNERIEVSRL 149 Query: 129 IARRKH----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 RK+ P++ DL+ + + I +H A D+ + + +++++ Sbjct: 150 YYERKYGNAPPNTEVDLSFAAILHDLCIPPLGQHDAFNDALMTAMMFLQL 199 >gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA 2018] Length = 317 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 14/176 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I + +M+ D ET + K + IG V + D ++ + + P + P + Sbjct: 7 IWRKEMKFTAIDFETA--NEKRNSPCSIGIVVVKDGHVVEKSHHL-IRPKEMRFMPINIG 63 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLD 119 +HGI ++ +P F ++ + +F++ IAHNA FD+ + +AEL I L Sbjct: 64 IHGIRPAMVEKEPEFDKVWEKIKHYFDDTLV--IAHNASFDISVLRKSAELYNIE---LP 118 Query: 120 PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I T+ +AR + N LN++ G H H AL D+ S++ + + Sbjct: 119 EFNYICTMKLARNFYKGIENAKLNTVNNFLGYEFRH---HDALYDALACSNIMLSI 171 >gi|315180012|gb|ADT86926.1| DNA polymerase III subunit epsilon [Vibrio furnissii NCTC 11218] Length = 238 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 5/121 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL D II IG V L+ NR + P +K ++ +HGIT Sbjct: 49 VAMDFETTGLSVDKDEIITIGLVPFTLERIYLNRAKHWTVRPR-QKLDEHSIVIHGITHN 107 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P S IF E + + + H + + F++ L+R + ++ +IDT+ Sbjct: 108 DIMDAPDLSDIFEEVLEHLAGRVL--VVHYHRIEREFLDRALKRRIGEGIE-FPVIDTME 164 Query: 129 I 129 I Sbjct: 165 I 165 >gi|307300662|ref|ZP_07580437.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti BL225C] gi|306904196|gb|EFN34781.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium meliloti BL225C] Length = 325 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 18/111 (16%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-----SPEALK 61 +R ++ D ETTGLD++ IIEIG V Y++ V G + P+ + Sbjct: 68 LRGVILDTETTGLDARKCEIIEIGLVSFT-YNEEGEIGDVVAIYGGLQQPTIAIPPDITR 126 Query: 62 LHGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 L GITD + D + +I D IAHNA FD F A Sbjct: 127 LTGITDAMVAGQSIDIAAVQAIVGPA-DLI-------IAHNAGFDRPFCEA 169 >gi|237748400|ref|ZP_04578880.1| exonuclease family protein [Oxalobacter formigenes OXCC13] gi|229379762|gb|EEO29853.1| exonuclease family protein [Oxalobacter formigenes OXCC13] Length = 327 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 14/104 (13%) Query: 10 IVF-DIETTGLDSKNDRIIEIGAVELLDYSKT-------NRTFQVFLCPNGRKNSPEALK 61 IVF D ETTGL S D IIE+G V+ L +S T R + P G+ +P + Sbjct: 78 IVFLDTETTGLSSDMDVIIELGLVKAL-FSPTAHRLVSIERIVSAYEDP-GKPITPFITE 135 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 L GITD+ ++ K ++ + F D +AHNA FD F Sbjct: 136 LTGITDDMVRGKRIDETMVAGFLD----DAVLIVAHNAAFDRPF 175 >gi|19069923|emb|CAC38117.2| polymerase epsilon subunit like protein [Providencia rettgeri] gi|19882268|gb|AAM01212.1| putative 3'-5'exonuclease [IncJ plasmid R391] gi|20095154|gb|AAM08020.1| hypothetical protein [Providencia rettgeri] gi|262318129|dbj|BAI48455.1| hypothetical protein [Proteus mirabilis] Length = 302 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 9/103 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64 ++ D ETTGL + ++ IIE+G V++L R + L + K PE + +L G Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE ++ + ++ + + + +AHNA+FD F Sbjct: 113 ITDEMVQGQRIDDALVAS----WLSDDPLVVAHNAQFDRPFFE 151 >gi|313682834|ref|YP_004060572.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense DSM 16994] gi|313155694|gb|ADR34372.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense DSM 16994] Length = 293 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 26/181 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+ D ETTG + DRI ++ + + D LC S EA+ +H IT E Sbjct: 5 IILDTETTG-AGEVDRICQLSYL-VCDEKGEILELHNDLCTPPLPISFEAMAIHHITPEM 62 Query: 70 LKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P +S F+ + N + + NA+FD+G + E + +++DT Sbjct: 63 LTGAPKCIETSAFNRLAE-LNTPDNLMVIQNAEFDLGMLAKEGMGLE------MKLVDTF 115 Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSK------------HGALLDSHLLSDVYIKM 174 + R HP + + L KRY + H+ + H AL D +L +Y K+ Sbjct: 116 RVLRAWHPLDTPHGLQF--KRYQWGLYHKEQPLIDKLGIEIKAHDALGDVIVLKHLYEKL 173 Query: 175 M 175 + Sbjct: 174 L 174 >gi|304389634|ref|ZP_07371596.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327187|gb|EFL94423.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 240 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 15/153 (9%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTG+ + DRI + + ++ + + R ++ G P A +++G+TDE+L+ Sbjct: 19 FDTETTGVFTSRDRIATVSLIRRINGTDSPR---YWIINPGVPMPPAAGRVNGLTDEYLQ 75 Query: 72 DKPSFSSI-FSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPL------DPS 121 + E E + + N FD + AEL R N L Sbjct: 76 AHGVDPRVGLEEVTGIIAETMRRGVPVVGFNVTFDFAILEAELARHNLPTLRQRLEGSVG 135 Query: 122 RIIDTLSIAR--RKHPSSRNDLNSLCKRYGITI 152 I+D L + R ++ + +L S+C Y + + Sbjct: 136 PIVDPLVLDRILDRYRKGKRNLASVCTAYDLPL 168 >gi|266625917|ref|ZP_06118852.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479] gi|288862187|gb|EFC94485.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479] Length = 333 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 54/85 (63%), Gaps = 9/85 (10%) Query: 94 WIAHNAKFDVGFI--NAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGI 150 +AHNA FDV FI NAE+ + P +P+ ++DT+++AR P+ +R L+++ K I Sbjct: 2 LVAHNASFDVSFINRNAEILGL---PFEPT-VLDTVTLARFLLPNLNRFKLDTVAKALNI 57 Query: 151 TISHRSKHGALLDSHLLSDVYIKMM 175 ++++ H A+ D+ +++++K + Sbjct: 58 SLANH--HRAVDDAGCTAEIFVKFV 80 >gi|302346280|ref|YP_003814578.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845] gi|302150309|gb|ADK96570.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845] Length = 896 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 23/146 (15%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAV---------ELLD-YSKTNRTFQVFLCPNGRK 54 N+ +VFD ETTGL+ D IIEI A+ E LD Y +T++ L G K Sbjct: 510 NEEEIVVFDTETTGLNVFQDDIIEIAAIRIKGGEVVGEPLDLYIETDKPILPML---GDK 566 Query: 55 NSPEALKLHG--ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 +P H T E L S S F + + + HNA +D ++ LQR Sbjct: 567 ENPMYAIYHEKMSTGELL----SPSDALRRFLAYVG--TSPILGHNANYDYNILDNNLQR 620 Query: 113 INKDPLDPS--RIIDTLSIARRKHPS 136 D + R D+L + R PS Sbjct: 621 YCNDTMQAHDIRCFDSLKLIRLLAPS 646 >gi|224029725|gb|ACN33938.1| unknown [Zea mays] Length = 457 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 22/173 (12%) Query: 9 KIVF-DIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPE-ALK 61 +IVF D+ET+ + ++E GAV L+D S +F + P P+ + Sbjct: 14 EIVFLDVETS---TPPCVLLEFGAVVVCSRRLVDVS----SFATLVRPANLDALPDPTAR 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120 +GIT L D P F + +D + + W HN FD I I + P P Sbjct: 67 SNGITRGTLADAPPFRDVADMVYDVLHGR--VWAGHNIVHFDSMIIMDAFAEIGRPPPQP 124 Query: 121 SRIIDTLSIARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL + + D L SL +G+ + +H +L D + DV+ Sbjct: 125 KAMIDTLPLLTQCFGPRAGDMKLASLANYFGLG---KQRHRSLDDVKMNIDVF 174 >gi|160689340|gb|ABX45528.1| polymerase C [Bacillus mojavensis] Length = 259 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +++ + + +IDTL + R +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNVAFKKLLQVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFNIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190 + D+ + + +KM+ ++ I + + NE+ Sbjct: 59 IYDTEATAYLLMKMLEDAAEKGIQYHDQLNEN 90 >gi|226947476|ref|YP_002802567.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A2 str. Kyoto] gi|226841365|gb|ACO84031.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A2 str. Kyoto] Length = 309 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F I+ + +FN N IAHNA FD+ + + L+ N + I T Sbjct: 58 PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYN-IKMPSFEYICT 114 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ + + N LN++ G H H AL D+ S++ I + Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKH---HDALADAMACSNILINI 160 >gi|222149115|ref|YP_002550072.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease [Agrobacterium vitis S4] gi|221736100|gb|ACM37063.1| DNA polymerase III epsilon subunit-like 3-5 exonuclease [Agrobacterium vitis S4] Length = 207 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 10/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ET + + +G + ++ + R + + P + S + +HGI + Sbjct: 10 IAIDFETA--NEERGSACSVG-LAFVENGQVVRVEERLIRPKTMRFSSFNIAIHGIRPDH 66 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D F + EF D F+ A +AHNA FD+ A + + P + ++ + Sbjct: 67 VEDAGEFPEVMDEFADDFS--GAMVVAHNAAFDLSVWRASCD-LYRQPYPSLSYVCSVKL 123 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A++ P + LN L ++ H H A D+ + + I MM Sbjct: 124 AQKVWPQLPSHRLNVLAAHLQLSFRH---HNAAEDASVCAQAVIAMM 167 >gi|261749409|ref|YP_003257094.1| bifunctional DNA polymerase III subunit alpha/DNA polymerase III, epsilon subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497501|gb|ACX83951.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 1435 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 31/227 (13%) Query: 10 IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-E 58 ++ D ETTGL +++N R+++I A +L D+S F+ F+ + P Sbjct: 3 LIVDTETTGLPVNYNFPISNTENWPRVVQI-AWQLHDFSGNLVEFKNFIIKPDHYDIPFN 61 Query: 59 ALKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 A K+HGIT+E K+ + EF F E++ I HN +FD+ I E R K+ Sbjct: 62 AFKIHGITNEIAEKNGEDLIFVLKEFKKSF-EKSKYLIGHNLEFDIKVIECEFFR-KKEQ 119 Query: 118 LDPSR--IIDT--LSIARRKHPSSRND-----LNSL-CKRYGITISHRSKHGALLDSHLL 167 + R I+DT +S++ + P R L L K +G +SH H A D Sbjct: 120 ISFKRKKILDTKEVSVSYCQLPGIRKKFKWPTLTELYYKLFGTKLSHS--HNAANDVKAT 177 Query: 168 SDVYIKMMVGGSQINFGFKTNED---RFFKEEKKTVPNISLLKRDKP 211 + +++++ G + K +E+ +F K + T+ + S++ +KP Sbjct: 178 ARCFLELLRLGIISSENLKIDENFILQFRKLHQSTISS-SMVSFNKP 223 >gi|227488565|ref|ZP_03918881.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51867] gi|227091459|gb|EEI26771.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51867] Length = 449 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 7/147 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ET D + IIEIG ++L+ + T++ P E + +HGI E Sbjct: 106 VAIDVETANDDWGS--IIEIGVTKVLNGLVEEQATWRCTPPPGMEDFLDENIAIHGIRPE 163 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +PSF+ + +F E ++HNA+FD + A + P+ +L+ Sbjct: 164 DIEGEPSFAQRYELVKEFTGE--LPMVSHNAQFDFTAL-ARACHASHCAAAPNEFGCSLA 220 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISH 154 ++R + + N L +C+ GI + H Sbjct: 221 LSRSRDLGFATNRLPDVCRGLGIALEH 247 >gi|227543169|ref|ZP_03973218.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51866] gi|227180978|gb|EEI61950.1| DNA polymerase III epsilon subunit [Corynebacterium glucuronolyticum ATCC 51866] Length = 449 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 7/147 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ET D + IIEIG ++L+ + T++ P E + +HGI E Sbjct: 106 VAIDVETANDDWGS--IIEIGVTKVLNGLVEEQATWRCTPPPGMEDFLDENIAIHGIRPE 163 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +PSF+ + +F E ++HNA+FD + A + P+ +L+ Sbjct: 164 DIEGEPSFAQRYELVKEFTGE--LPMVSHNAQFDFTAL-ARACHASHCAAAPNEFGCSLA 220 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISH 154 ++R + + N L +C+ GI + H Sbjct: 221 LSRSRDLGFATNRLPDVCRGLGIALEH 247 >gi|256637237|dbj|BAI03206.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-03] gi|256640289|dbj|BAI06251.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-07] gi|256643346|dbj|BAI09301.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-22] gi|256646401|dbj|BAI12349.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-26] gi|256649454|dbj|BAI15395.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-32] gi|256655498|dbj|BAI21425.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-12] Length = 337 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 11/110 (10%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ-------VFLCPNGRKNS 56 K K + + D+ETTGL S +D+I+ I + L Y+ ++ Q ++ +K+ Sbjct: 122 KGKNKPLFVDVETTGLHS-DDQIVSICMILL--YADKSQELQKLTYKSLYYIFDPCKKSH 178 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 P A +HG D L+ + F F E + +AHN FD+ FI Sbjct: 179 PIAEGIHGYNDWTLRHQNLFEEKMEHILSFIEESDV-IVAHNVNFDMKFI 227 >gi|258543099|ref|YP_003188532.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO 3283-01] gi|256634177|dbj|BAI00153.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-01] gi|256652440|dbj|BAI18374.1| DNA polymerase III exonuclease epsilon subunit like protein [Acetobacter pasteurianus IFO 3283-01-42C] Length = 343 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 11/110 (10%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ-------VFLCPNGRKNS 56 K K + + D+ETTGL S +D+I+ I + L Y+ ++ Q ++ +K+ Sbjct: 128 KGKNKPLFVDVETTGLHS-DDQIVSICMILL--YADKSQELQKLTYKSLYYIFDPCKKSH 184 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 P A +HG D L+ + F F E + +AHN FD+ FI Sbjct: 185 PIAEGIHGYNDWTLRHQNLFEEKMEHILSFIEESDV-IVAHNVNFDMKFI 233 >gi|153938164|ref|YP_001389626.1| DNA polymerase III subunit epsilon [Clostridium botulinum F str. Langeland] gi|152934060|gb|ABS39558.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum F str. Langeland] gi|295317718|gb|ADF98095.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum F str. 230613] Length = 309 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F I+ + +FN N IAHNA FD+ + + L+ N + I T Sbjct: 58 PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYN-IKMPSFEYICT 114 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ + + N LN++ G H H AL D+ S++ I + Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKH---HDALADAMACSNILINI 160 >gi|298346657|ref|YP_003719344.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC 43063] gi|298236718|gb|ADI67850.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC 43063] Length = 240 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 29/160 (18%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTG+ + DRI + + ++ + + R ++ G P A +++G+TDE+L+ Sbjct: 19 FDTETTGVFTSRDRIATVSLIRRINGTDSPR---YWIINPGVPMPPAAGRVNGLTDEYLQ 75 Query: 72 DKPSFSSI-FSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN------------- 114 + E E + + N FD + AEL R N Sbjct: 76 ANGVDPRVGLEEVAGIVAETMRRGVPVVGFNVTFDFAILEAELARHNLPTLRQRLEGTVG 135 Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152 DPL RI+D ++ + +L S+C Y + + Sbjct: 136 PIVDPLVLDRILD-------RYRKGKRNLASVCTAYDLPL 168 >gi|168177595|ref|ZP_02612259.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum NCTC 2916] gi|182670548|gb|EDT82522.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum NCTC 2916] Length = 309 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F I+ + +FN N IAHNA FD+ + + L+ N + I T Sbjct: 58 PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYN-IKMPSFEYICT 114 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ + + N LN++ G H H AL D+ S++ I + Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKH---HDALADAMACSNILINI 160 >gi|83943990|ref|ZP_00956447.1| exonuclease [Sulfitobacter sp. EE-36] gi|83845237|gb|EAP83117.1| exonuclease [Sulfitobacter sp. EE-36] Length = 188 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 12/133 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D+ET DS + I I V D T T+ L P +P + LHGI E Sbjct: 12 IALDVETACGDSASICQIGIACVGFDDSILTWSTYVDPLMPF----APFNVDLHGIGPET 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII--DTL 127 ++ SF+ I+ + W + + +++FD INA + L R+ D++ Sbjct: 68 VRGAGSFAQIWPQIWPLLSRHP---MVQHSRFDEYAINAACKAQG---LPRPRLTWHDSV 121 Query: 128 SIARRKHPSSRND 140 +IARR P + + Sbjct: 122 TIARRAWPELKGN 134 >gi|322829565|gb|EFZ32905.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma cruzi] Length = 1404 Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFDIE+TGL++ D IIEI A + ++ + +F + P R E + +H ITD Sbjct: 761 RLVVFDIESTGLNTATDAIIEIAAWDPVEAT----SFSSLVDPE-RAIPQETMAIHHITD 815 Query: 68 EFLKDKPSFSSI 79 ++ P + Sbjct: 816 GMVRGAPRLPEV 827 >gi|33861178|ref|NP_892739.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639910|emb|CAE19080.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 270 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGLD D IIE+G + +K+ + FL P +S EA ++GI+ E Sbjct: 50 LILDTETTGLDENKDEIIEVGCILFNVNTKSVLSQVSFLFP---VSSNEAEHVNGISAEV 106 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRIIDTLS 128 K + + F + + +AHN +FD F L ++ K + ++ ++ Sbjct: 107 TNIKQPWEDGLNFFLKLVDCSDLI-VAHNVEFDKKWFGKGRLPKLEKKWICS---LEDIN 162 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +K+ +R + L + I + S H AL D +S+V+ K Sbjct: 163 WSFQKNLKNRPSVTDLALSFSIPV--WSLHRALSDCFYISEVFKKC 206 >gi|255743723|ref|ZP_05417681.1| polymerase epsilon subunit like protein [Vibrio cholera CIRS 101] gi|255738584|gb|EET93971.1| polymerase epsilon subunit like protein [Vibrio cholera CIRS 101] gi|259156231|gb|ACV96178.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ban5] gi|259156377|gb|ACV96322.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Ind5] Length = 301 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 17/107 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64 ++ D ETTGL + ++ IIE+G V++L R + L + K PE + +L G Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 65 ITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE ++ D +S S+ + +AHNA+FD F Sbjct: 113 ITDEIVQGQRIDDAMVASWLSD--------DPLVVAHNAQFDRPFFE 151 >gi|148378258|ref|YP_001252799.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A str. ATCC 3502] gi|148287742|emb|CAL81808.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502] Length = 309 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F I+ + +FN N IAHNA FD+ + + L+ N + I T Sbjct: 58 PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYN-IKMPSFEYICT 114 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ + + N LN++ G H H AL D+ S++ I + Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKH---HDALADAMACSNILINI 160 >gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL Brener] gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma cruzi] Length = 1473 Score = 42.4 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFDIE+TGL++ D IIEI A + ++ + +F + P R E + +H ITD Sbjct: 830 RLVVFDIESTGLNTATDAIIEIAAWDPVEAT----SFSSLVDPE-RAIPQETMAIHHITD 884 Query: 68 EFLKDKPSFSSI 79 ++ P + Sbjct: 885 GMVRGAPRLPEV 896 >gi|319892935|ref|YP_004149810.1| DNA polymerase III polC-type [Staphylococcus pseudintermedius HKU10-03] gi|317162631|gb|ADV06174.1| DNA polymerase III polC-type [Staphylococcus pseudintermedius HKU10-03] gi|323464018|gb|ADX76171.1| conserved hypothetical protein [Staphylococcus pseudintermedius ED99] Length = 186 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 15/158 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN---GRKNSPEALKLHGIT 66 + D ET + K I +G V+++ ++ TF + PN +N +++HGI Sbjct: 7 VALDFETA--NYKRTSICSVGMVKVVA-NEIVETFYTLVNPNDFFAARN----IEVHGIQ 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ P+F+ ++ F + +AHNA FD+ ++A +Q N P + Sbjct: 60 AKDVQHSPNFAYVYPYMMQFIGD--LPVVAHNAAFDMSVLHASIQAENLIT-PPMTYFCS 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +A+R + R+ L + + + H AL D+ Sbjct: 117 YQLAKRTVSARRHGLKHMMSHFNLDF--HGHHDALNDA 152 >gi|158424105|ref|YP_001525397.1| putative exonuclease [Azorhizobium caulinodans ORS 571] gi|158330994|dbj|BAF88479.1| putative exonuclease [Azorhizobium caulinodans ORS 571] Length = 334 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 71/181 (39%), Gaps = 19/181 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPNGRKNSPEALKLH 63 ++ D ETTGLD D +IE+G V Y + TF P SP KL Sbjct: 83 VIVDTETTGLDHTRDEVIELGMVA-FTYREGGAIGDVVDTFSALREPT-VPISPVITKLT 140 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E + + SI E F + + IAHNA+FD F ++ + P S Sbjct: 141 GITPEMVAGQ----SIDLEAAARFIQPASIVIAHNARFDRPFCEHLVEGFDVKPWACS-- 194 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + L L + G+ + H A+ D H L +V + + F Sbjct: 195 --VVEVPWADFGFEGTKLGYLIGQCGM---FHNGHRAVDDCHALLEVLAAPLKEATGTAF 249 Query: 184 G 184 G Sbjct: 250 G 250 >gi|144898742|emb|CAM75606.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum gryphiswaldense MSR-1] Length = 173 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 11/120 (9%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKD--PL 118 +HGIT + +KD+P F + E D + A ++ AHNA FD G + AE R + PL Sbjct: 51 IHGITWDMVKDQPDFGHFWPEIRDLIDA--APFLAAHNAPFDKGVL-AECCRAHGHGAPL 107 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 P + T+ +AR L +C+ ++H H AL D+ +++ + + G Sbjct: 108 TP--FVCTVRVARDTWNLRPTKLPDVCRFLAQPLNH---HDALSDAVACAEIMLAALRDG 162 >gi|315268227|gb|ADT95080.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica OS678] Length = 201 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 23/178 (12%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGI 65 ++ D ETTGL+ + ++EI +E RT + + R +P EA +HGI Sbjct: 32 AVILDTETTGLEWGCE-VVEISIIE-------ARTGLILMNTLVRPINPIPAEATAIHGI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+E + D P F I + + IA+N+ FD + + + +P + Sbjct: 84 TNEMVADAPLFFDIAISVAQILSGRTV--IAYNSAFDKKMLCSSAAYSSGEPPYVNSDFQ 141 Query: 126 TLSIARRKHPSSRN---------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A ++ N L + K+ GI + + H AL D L ++ +KM Sbjct: 142 CAMLAYAQYKGDWNHGHGDFKWHSLVNAAKQQGIAL-EGTAHRALYDCQLTRELILKM 198 >gi|209550157|ref|YP_002282074.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535913|gb|ACI55848.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 196 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 7/149 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ I D ET + + +G + ++ + R + + P + S + +HGI Sbjct: 1 MKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++D P F + EF + + A IAHNA FD A L + + + + Sbjct: 58 PEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISH 154 L +A+R P + LN + + G+ H Sbjct: 115 LKMAQRIWPHFLSHRLNLIAEHLGLRFVH 143 >gi|119383203|ref|YP_914259.1| exonuclease, RNase T and DNA polymerase III [Paracoccus denitrificans PD1222] gi|119372970|gb|ABL68563.1| Exonuclease, RNase T and DNA polymerase III [Paracoccus denitrificans PD1222] Length = 303 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 15/113 (13%) Query: 3 RKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-----FLCPNGRKNS 56 R +MR + + D ETTGLD DR++EI A+E L R ++ + GR Sbjct: 48 RSTEMRIVAIIDTETTGLDPTTDRLVEI-AIERLSVDARGRIIEMEHPRSWREDPGRSMP 106 Query: 57 PEALKLHGITDEFLKDKPSF--SSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 P L G+TD L +F SI ++ E + IAHNA FD F++ Sbjct: 107 PRLTLLTGLTDADLAGC-AFDDESIVAQ----LGEADVI-IAHNAAFDRPFVD 153 >gi|261855262|ref|YP_003262545.1| ribonuclease T [Halothiobacillus neapolitanus c2] gi|261835731|gb|ACX95498.1| ribonuclease T [Halothiobacillus neapolitanus c2] Length = 241 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 19/182 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-----FQVFLCP-NGRKNSPEALKLH 63 +V D+ET GL+ + D ++E+ A LLD + Q+ + P G +P ++K++ Sbjct: 41 VVVDVETGGLNPQTDALLEL-AAVLLDVDANGKIIPVDRIQIHVQPFEGANLNPVSMKIN 99 Query: 64 GI-TDEFLKDKPSFSSIFSEFWDFFNE-------QNAEWIAHNAKFDVGFINAELQRI-- 113 GI D + + +F+ + + A + HNA FD+ INA +R Sbjct: 100 GIDIDHPFRCALDEAEALKQFFQPIRQRVKLNGARRAVLVGHNAAFDLAVINAACERTCN 159 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 K+P P DT++++ L + G+ + HGAL D+ ++++ + Sbjct: 160 KKNPFHPFSTFDTVTLSALA--VGETVLAKALEAIGLEWDSQQAHGALYDAEQTAELFCR 217 Query: 174 MM 175 ++ Sbjct: 218 II 219 >gi|293606916|ref|ZP_06689263.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553] gi|292814648|gb|EFF73782.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553] Length = 208 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 16/159 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA---LKLHGIT 66 IV D+ETTGL + I+E AV + R + + R +P +L GIT Sbjct: 40 IVADLETTGLSTATCEILEFAAVRVETCGTLAREYTQVV----RTAAPVPSFITRLTGIT 95 Query: 67 D-EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 E + FS F +F + + HNA FD F+ A R + + Sbjct: 96 QAEVDRHGVPVMQAFSSFLEFVEDLPVFF--HNASFDRRFLGAAADRTGMPFANATHC-- 151 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163 TL++ARR P + L+ L + G + H AL D Sbjct: 152 TLALARRAWPELPSHKLDILARHVG---ASNPTHRALAD 187 >gi|325103944|ref|YP_004273598.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM 12145] gi|324972792|gb|ADY51776.1| Exonuclease RNase T and DNA polymerase III [Pedobacter saltans DSM 12145] Length = 315 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 16/125 (12%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYS---KTNRTFQVFLCPNGRKNSPEALKLHGITD 67 FD+E TG++ DRI+EI +++ +D S KT+R P E +HGI D Sbjct: 12 FDLEATGVNLGIDRIVEISILKINVDGSEEVKTHRINPTIPIPY------EVSIIHGIYD 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQR--INKDPLDPSRII 124 + ++++P+F + E DF + A+ +N+ KFD+ + E + +N D LD + Sbjct: 66 KDIENEPTFKDLAQEIADFIGD--ADLAGYNSNKFDIPMLMEEFLKAGVNFD-LDNRHFV 122 Query: 125 DTLSI 129 D +I Sbjct: 123 DVQNI 127 >gi|167842269|ref|ZP_02468953.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia thailandensis MSMB43] Length = 292 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 8/93 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD + + I+EI +LD + L +A +HGITD Sbjct: 130 LFIDTETTGLDFQAE-IVEIA---ILD--RAGALLLDTLVKPAMPIPADATAIHGITDAH 183 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 + P ++S+ + + + WIAH+A FD Sbjct: 184 VAGAPGWASVGPQVAELLAGRL--WIAHHAAFD 214 >gi|153008625|ref|YP_001369840.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC 49188] gi|151560513|gb|ABS14011.1| Exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi ATCC 49188] Length = 332 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +V D ETTGL+ + IIEIGAV TF P+ + + ++ G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPS-KPIPADITRITG 132 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITD+ +K + +I E D + IAHNA FD F+ Sbjct: 133 ITDDMVKGQ----TIPREKLDALIAEADIIIAHNAGFDRPFLE 171 >gi|305665063|ref|YP_003861350.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88709815|gb|EAR02047.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170] Length = 461 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 13/168 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69 + DIETTG K ++I EI + Y + F + P P + L GI ++ Sbjct: 4 IVDIETTGNGIKGNKITEISIFKYDGYDIIDE-FTSLVNPECE--IPYFITGLTGIDNDL 60 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLS 128 ++D P I + + ++ ++AH+ FD G I EL+ I LD +R + T+ Sbjct: 61 VRDAPKLIEISHKILEI--TKDTIFVAHSVGFDYGVIKNELKTIG---LDFTRKKLCTVR 115 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R+ P + L +C I ++ R H A D+H + ++ K++ Sbjct: 116 LSRKLIPGYNSYSLGKICSALKIPLTDR--HRARGDAHATTLLFQKLL 161 >gi|256851899|ref|ZP_05557287.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN] gi|260661840|ref|ZP_05862750.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN] gi|282931860|ref|ZP_06337341.1| DNA polymerase III [Lactobacillus jensenii 208-1] gi|256615857|gb|EEU21046.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN] gi|260547309|gb|EEX23289.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN] gi|281304023|gb|EFA96144.1| DNA polymerase III [Lactobacillus jensenii 208-1] Length = 317 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 8/167 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF- 69 + DIETTGL DRI E+ +++ + Q+ P K KL+GI + Sbjct: 37 MLDIETTGLSPYRDRITELAGIKVRNGKVVAEYSQLVKYPKDNKVPRFITKLNGIDEALI 96 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + +EF +F + +N FD+ FI ++ L + ID L Sbjct: 97 LANGMPVKEAITEFRNFIG--GDVIVGYNVNFDLNFIYDLCEKFQLKKL-SNNYIDVLHF 153 Query: 130 ARR-KHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIK 173 +R S N L +R GI+ S HR + LD+ + D+Y K Sbjct: 154 SRVFFKKESHNRLLDCIRRLGISESEAHRGLKDS-LDTKAVFDIYRK 199 >gi|311696841|gb|ADP99714.1| exonuclease, RNase T and DNA polymerase III [marine bacterium HP15] Length = 242 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 25/172 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLD+ I+ IG V LD + + + P + ++ +HGIT Sbjct: 53 VALDFETTGLDANQHSIVSIGLVPFTLDGIQLGKARHWIVRPKLPLHQ-TSITIHGITHS 111 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127 + P + I + + N + + H + F + LQ R+ + P +IDT+ Sbjct: 112 DIDQAPDLNDILKDLFACLNGRIP--VVHYRNIERSFFDVALQWRLGEGIRFP--LIDTM 167 Query: 128 SIARRKHPSSRND---------------LNSLCKRYGITISHRSKHGALLDS 164 +I HP RN L RYG + H + H AL+D+ Sbjct: 168 AIEAHLHP-DRNPSRWQQLLGKKPVSIRLADSRLRYG--LPHYAAHNALIDA 216 >gi|218461184|ref|ZP_03501275.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli Kim 5] Length = 240 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 7/149 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 ++ I D ET + + +G + ++ + R + + P + S + +HGI Sbjct: 45 LKTIAIDFETA--NEQRGSACSVG-LAWIEEGRVIRVEERLIRPREMRFSGMNIAIHGIR 101 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++D P F + EF D F + A IAHNA FD A L + + + + Sbjct: 102 PEDVEDAPEFPEVMDEFHDDF--RGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 158 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISH 154 L +A+R P + LN + + G+ H Sbjct: 159 LKMAQRIWPHFLSHRLNLIAEHLGLRFMH 187 >gi|126695985|ref|YP_001090871.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9301] gi|126543028|gb|ABO17270.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9301] Length = 259 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 22/198 (11%) Query: 6 KMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLH 63 K+ KI + D ETTGLD D +IEIG + L D S QV FL P N+ +A ++ Sbjct: 34 KIEKILILDTETTGLDENKDEVIEIGCI-LFDVSFKCVLSQVSFLFP---VNNNKAEYVN 89 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSR 122 GI+ E + + F + + +AHN +FD F L ++NK + Sbjct: 90 GISAEVTNISQPWEDGLNFFLKLVDSSDFI-VAHNVEFDKKWFGKGRLPKLNKKWICS-- 146 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK------MMV 176 ++ ++ + +K +R + L + I + + H AL D +S+V+ K +++ Sbjct: 147 -LEDINWSFQKSLKNRPSVTDLALSFSIPVWNL--HRALSDCFYISEVFKKCDNLEELLL 203 Query: 177 GGSQINFGFK---TNEDR 191 ++ F +K + EDR Sbjct: 204 KATEPRFLYKALISYEDR 221 >gi|284009066|emb|CBA76036.1| ribonuclease T [Arsenophonus nasoniae] Length = 147 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Query: 95 IAHNAKFDVGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152 +AHNA FD FI A QR N ++P P DT +++ + L C GI Sbjct: 53 VAHNANFDHSFIMAAAQRANLKRNPFHPFATFDTATLSGLVF--GQTILAKACYTAGIPF 110 Query: 153 SHRSKHGALLDS 164 + HGAL D+ Sbjct: 111 DGKQAHGALYDT 122 >gi|226498878|ref|NP_001148000.1| UTP-glucose-P-uridyltransferase homolog [Zea mays] gi|194706488|gb|ACF87328.1| unknown [Zea mays] gi|195615060|gb|ACG29360.1| exonuclease [Zea mays] Length = 499 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 21/159 (13%) Query: 12 FDIETTGLD--SKNDRIIEIGA--------VELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 FD+ET+ + ++E GA VE+ Y+ R S +++ Sbjct: 38 FDVETSVPQRAGQGYALLEFGAILVCPRRLVEVASYATLVRPAD-----PASAVSAASVR 92 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120 +GIT + + P F + +D N + W HN +FD I I + P P Sbjct: 93 CNGITRDAVSAAPPFRDVADAVYDLLNGR--VWAGHNIVRFDSARIREAFTEIGRSPPQP 150 Query: 121 SRIIDTLSIARRKHPSSRNDLN--SLCKRYGITIS-HRS 156 +IDTL + ++ D+ SL +G+ HRS Sbjct: 151 KGMIDTLPLLTQRFGRRAGDMKMASLANYFGLGKQRHRS 189 >gi|94496850|ref|ZP_01303425.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease [Sphingomonas sp. SKA58] gi|94423863|gb|EAT08889.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease [Sphingomonas sp. SKA58] Length = 312 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 20/118 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP------EALKLH 63 + D+ETTGLD + DRIIE+ AV+ + R QV + P + P KL Sbjct: 67 VAVDVETTGLDRETDRIIEL-AVQRFRFDALGRVIQVGV-PRVWREDPGIPIDLRITKLT 124 Query: 64 GITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 G+ + L D+ + I S D +AHNA FD FI+ L I P Sbjct: 125 GLMADDLAGQVIDETAAVEILSSA-DII-------VAHNAAFDRPFIDRRLPAIAGKP 174 >gi|78184888|ref|YP_377323.1| exonuclease [Synechococcus sp. CC9902] gi|78169182|gb|ABB26279.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9902] Length = 307 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 10/165 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGL+ +N +E+GA+ S+ Q FL P N+ E ++ I Sbjct: 79 LILDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFLLP-AETNAAE--PINRIPAAV 135 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRIIDTLS 128 + + F + + + +AHNA FD F EL + + L + D Sbjct: 136 TRLPQPWKQALLWFQNLLDAADVL-VAHNAAFDRQWFGRGELPTVTQPWL--CSMEDMRW 192 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A R+ SR + L YG+ + + H AL D L++V+ + Sbjct: 193 PADRQL-RSRPSVRDLALAYGVPV--WAAHRALTDCIYLAEVFAR 234 >gi|332291057|ref|YP_004429666.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332169143|gb|AEE18398.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 458 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 7/148 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI A+ D + F + P R + L GI + L Sbjct: 4 ILDIETTGGKYNEEGITEI-AIYKFDGHQVVDQFITLVNPE-RPIQAFVVGLTGINNGML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P F I + + +AHNA+FD ++ E R+ P + + + ++ ++ Sbjct: 62 TDAPKFHEIAKRIIEI--TEGCIIVAHNAQFDYRILSLEFDRLGY-PYERTTLC-SVELS 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSK 157 + P + L L K GI +S+R + Sbjct: 118 QELLPGHDSYSLGKLTKTLGIAMSNRHR 145 >gi|197286329|ref|YP_002152201.1| plasmid-related exonuclease [Proteus mirabilis HI4320] gi|194683816|emb|CAR44904.1| putative plasmid-related exonuclease [Proteus mirabilis HI4320] Length = 301 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 9/101 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64 ++ D ETTGL + ++ IIE+G V++L R + L + K PE + +L G Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIIDLISLYEDPGKPIPELITELTG 112 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 ITD+ ++ + S+ + + + +AHNA+FD F Sbjct: 113 ITDDMVQGQHIDDSLVAS----WLSDDPLVVAHNAQFDRPF 149 >gi|290991983|ref|XP_002678614.1| predicted protein [Naegleria gruberi] gi|284092227|gb|EFC45870.1| predicted protein [Naegleria gruberi] Length = 302 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 13/135 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIE T ++ R+IE+ ++D + + +F + + ++ IT Sbjct: 82 VVLDIEGTSTNTSYCRMIEVACARIVDGTSIS-SFTSLVNADIDYIPEPVQEITKITKAM 140 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPSRIID- 125 + P + S+ ++F + Q + + HN +FD I E R IN + P I Sbjct: 141 IDLSPPPQIVLSQLYNFLSSQPSLVVGHNVRFDASVIYNEFVRYKIINNEVHKPDDFISH 200 Query: 126 --------TLSIARR 132 TL +ARR Sbjct: 201 SLFTNTLCTLKLARR 215 >gi|209546045|ref|YP_002277935.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538902|gb|ACI58835.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 326 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 16/107 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGL+ ++D IIEIGAV D ++ L R E +L GI Sbjct: 75 VILDTETTGLNHRSDEIIEIGAVAFTFDDDGGIGDIVGIYGGLQQPSRPIPAEITRLTGI 134 Query: 66 TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 TD ++ D S S++ E IAHNA FD F A Sbjct: 135 TDAMVEGQVIDMWSLSALI--------EPADLIIAHNAGFDRPFCEA 173 >gi|163754237|ref|ZP_02161360.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] gi|161326451|gb|EDP97777.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] Length = 457 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 14/154 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETTG ++++I EI + D F + PN + L GI + + Sbjct: 9 IIDVETTG---RSNKITEISIFKF-DGETIVDEFTSLVNPNVLIPT-HITALTGIDNAMV 63 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-IIDTLSI 129 D P+F+ I E +++ ++AHN FD I E + I+ LD R + T+ + Sbjct: 64 ADAPTFAEIAKEVLSI--TKDSIFVAHNVNFDYNVIRNEFKAID---LDFRRKKLCTVRL 118 Query: 130 ARRKHPSSRN-DLNSLCKRYGITIS--HRSKHGA 160 +R P ++ L LCK I IS HR++ A Sbjct: 119 SRALIPGFKSYSLGKLCKSLNIHISDRHRARGDA 152 >gi|260881524|ref|ZP_05404631.2| exonuclease [Mitsuokella multacida DSM 20544] gi|260848674|gb|EEX68681.1| exonuclease [Mitsuokella multacida DSM 20544] Length = 196 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 12/133 (9%) Query: 9 KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I F+ T DS ++ I A L+D ++ + P + S K+HG+T+ Sbjct: 6 AIDFETATGARDSACSVAVVTIRAGALVD------SYYTLIQPPANRYSYFNTKIHGLTE 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDT 126 + F+ I+ E Q +AHNAKFD+ + + L R P+ DT Sbjct: 60 ADTANAADFAGIWPELEAKLEGQLV--VAHNAKFDMSVLRSCLARYGLQA--PAFSYCDT 115 Query: 127 LSIARRKHPSSRN 139 ++IARR P+ N Sbjct: 116 VAIARRAWPNLAN 128 >gi|31747840|gb|AAO38419.1| Lfe210p1 [Leptospirillum ferrooxidans] Length = 111 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 10/118 (8%) Query: 14 IETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFLK 71 +ET+GL R++E A+ + D K F+ +G+ PE + +++GIT E Sbjct: 1 METSGLLRDPEARVVEW-ALSVWDGDK--EIFRGGSLVSGKGPIPEEVSRINGITTEMTV 57 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIIDTLS 128 P+F ++ E+ + + A +AHN FD+G IN +L R + PL +P ID+L Sbjct: 58 GCPTFRELYGEWKEHL--KKAIVVAHNLSFDLGMINRDLIRQGEIPLGNPG--IDSLG 111 >gi|149190662|ref|ZP_01868930.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] gi|148835545|gb|EDL52514.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] Length = 176 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 23/178 (12%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL-----KLHGI 65 D ETT LD I+ I A +++D T+ F+V R ++P++L K+H I Sbjct: 1 MDCETTSLDPSVAEIVTIAATKIIDNRIITSDPFEV------RLSAPKSLGEDSVKIHHI 54 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + LK S S +F N + ++ ++D ++ ++ PL P+ +I+ Sbjct: 55 THDELKHGISEKQAMSALLNFIG--NRPLVGYHIRYDKKILDRAAKKHLGFPL-PNELIE 111 Query: 126 TLSIARRKH----PSSRNDLN--SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 I K P+ DL+ ++C+ I H KH AL D+ + VY+K+ G Sbjct: 112 VSQIYNDKLLKLLPNGYFDLSLEAICRHLQIPNYH--KHDALEDAKAAAMVYLKLTRG 167 >gi|325298421|ref|YP_004258338.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] gi|324317974|gb|ADY35865.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] Length = 258 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 16/130 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64 + FD+ETTG + DRI+EI +++ + SKT R N + PE + +HG Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKIYPNGNEESKTMRI-------NPEMHIPETSTAIHG 62 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD-PLDPSR 122 I DE + D P+F I E + A+ N+ +FDV + E R D L + Sbjct: 63 IHDEDVADCPTFKQIAKELAKSI--EGADIAGFNSNRFDVPVLVEEFLRAGIDIDLSKRK 120 Query: 123 IIDTLSIARR 132 ID I + Sbjct: 121 FIDVQVIYHK 130 >gi|260221319|emb|CBA29763.1| hypothetical protein Csp_A13780 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 307 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 20/163 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN---RTFQVF--LCPNGRKNSPEALKLHG 64 +V D ETTGLD ++IIE+ + + + T QV+ L G+ PE + + G Sbjct: 40 LVLDTETTGLDQAKEKIIELALLRVDIDTATGLPVGPVQVYDGLEDPGKAIPPEVVAITG 99 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI- 123 I D ++ + + +E + IAHNA FD F+ + L P S Sbjct: 100 IQDADVQGQALDEARVAELMQGVDVV----IAHNAGFDRPFVESRLPAFAALPWACSFAD 155 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITI-SHRSKHGALLDSH 165 +D S+ R S L SL + G+ +HR++ +D H Sbjct: 156 LDWKSLGR-----SSAKLESLAQELGLFYDAHRAE----MDCH 189 >gi|15451562|gb|AAK98686.1|AC021893_20 Putative exonuclease [Oryza sativa Japonica Group] gi|31432000|gb|AAP53699.1| exonuclease family protein, expressed [Oryza sativa Japonica Group] gi|222612804|gb|EEE50936.1| hypothetical protein OsJ_31475 [Oryza sativa Japonica Group] Length = 436 Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 12 FDIETTGLDSKNDR--IIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 FD+ET+ +R ++E G++ L + F + P+ EAL+ GIT Sbjct: 26 FDVETSMPWGPRERRTLLEFGSIFLCPRLVEVAEPFVTLVRPSDLGVVTEALERKGITRG 85 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127 L+D P F + + + + W HN FD I I + P +P +IDTL Sbjct: 86 ALEDAPPFCDVADNIHNVLHGRI--WAGHNIISFDSEIIREAFAEIGRSPPEPKGMIDTL 143 Query: 128 SI 129 + Sbjct: 144 PL 145 >gi|254430147|ref|ZP_05043850.1| exonuclease [Cyanobium sp. PCC 7001] gi|197624600|gb|EDY37159.1| exonuclease [Cyanobium sp. PCC 7001] Length = 292 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 24/169 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGLD + D +E+GA+ S+ + FL P R+N EA ++GI Sbjct: 66 LILDTETTGLDPEQDHCLEVGAILFHVPSRAVLSQISFLLPV-RENPAEA--INGIAAAT 122 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRIIDTLS 128 + + S F + +A +AHNA FD F EL + + I ++ Sbjct: 123 TRLPQPWRQGLSCFEAMAADADAV-LAHNAAFDRQWFGRGELPALG------APWICSME 175 Query: 129 IAR-------RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 R R +PS R+ L YG+ + + H AL D L+ V Sbjct: 176 DIRWPAERGLRPNPSVRD----LALAYGVPV--WAAHRALTDCIYLAQV 218 >gi|299132474|ref|ZP_07025669.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2] gi|298592611|gb|EFI52811.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2] Length = 297 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 18/107 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP------EALKLH 63 ++ D+ETTGLD D IIE+ V Y+ +V L P R P E L Sbjct: 44 LMVDVETTGLDPDRDEIIELAMVP-FRYALDGTVVEV-LEPFDRLREPSKPISSEITVLT 101 Query: 64 GITDEFLKDK---PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 GITD + K PS ++F+ A IAHNA FD F+ Sbjct: 102 GITDAMVAGKSIDPSEVTMFA-------APAAVVIAHNAAFDRRFLE 141 >gi|156974590|ref|YP_001445497.1| hypothetical protein VIBHAR_02308 [Vibrio harveyi ATCC BAA-1116] gi|156526184|gb|ABU71270.1| hypothetical protein VIBHAR_02308 [Vibrio harveyi ATCC BAA-1116] Length = 217 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 8/104 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+ D ETTGL S + IIE A+ + + + L EA +HGITDE Sbjct: 20 IIIDTETTGLGSDTE-IIEFTAI----CADSGKVIVNELVKPTCSIPAEATAIHGITDED 74 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQR 112 +KD P F +FS + F N I +N+ FD I L + Sbjct: 75 VKDAPDFHLVFSNY--FLPLLNGRPIIIYNSDFDTRLIIQSLDK 116 >gi|150025957|ref|YP_001296783.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] gi|149772498|emb|CAL43981.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] Length = 453 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 9/160 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI A+ D + F + P P +KL GI + L Sbjct: 4 ILDIETTGGQFNEEGITEI-AIYKFDGHQIVDQFISLVNPE-IPIQPFVVKLTGINNAML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P F + + ++ +AHN FD + E R+ D ++ + T+ +A Sbjct: 62 VSAPKFHEVAKRIVEI--TKDCIIVAHNTVFDYRILRTEFSRLGYD--FQAKTLCTVELA 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITIS--HRSKHGALLDSHLL 167 + P + L L + GI I+ HR++ AL L Sbjct: 118 KILIPEQPSYSLGKLVRALGIPITNRHRAEGDALATVKLF 157 >gi|289550389|ref|YP_003471293.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01] gi|315660145|ref|ZP_07913002.1| exonuclease [Staphylococcus lugdunensis M23590] gi|289179921|gb|ADC87166.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01] gi|315494826|gb|EFU83164.1| exonuclease [Staphylococcus lugdunensis M23590] Length = 186 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 9/166 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + K I +G V+++D ++ +F + P S + + +HGI E Sbjct: 9 VALDFETA--NGKRTSICSVGMVKVID-NQITESFHTLINPQDYF-SKKNINVHGINPED 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F +F F N +AHNA FD+ ++ L++ D + + + Sbjct: 65 VIHAPQFDYVFPYMLQFI--ANLPVVAHNAAFDMNVLHQSLKQAGIITPDLTYFC-SYQL 121 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+R + R L + Y + H AL D+ + + +++ Sbjct: 122 AKRTIDAPRYGLKHMMDFYNLDF--HGHHDALNDAKACAMITFRLL 165 >gi|315037938|ref|YP_004031506.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112] gi|312276071|gb|ADQ58711.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112] Length = 177 Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++H IT E +K+ P+ + ++ + + + AHNA+FD + L R N + Sbjct: 50 IQVHQITAEDVKNAPTMAEVWPKIKGLY-QPGMLVAAHNARFDTNVMRQSLARYNIS--E 106 Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +IDTL+ ++R P N L+++ + + H H AL DS + + I Sbjct: 107 PHYLVIDTLTTSKRFEPELPNHKLDTVSDALDVELWHH--HNALSDSEACAGILI 159 >gi|153870628|ref|ZP_01999989.1| ribonuclease T [Beggiatoa sp. PS] gi|152072905|gb|EDN70010.1| ribonuclease T [Beggiatoa sp. PS] Length = 212 Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 18/181 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLHG 64 +V D+ET G + + D ++EI AV L + ++T + P G +AL+ G Sbjct: 19 VVVDVETAGFNPERDALLEIAAVILQINEEGLWQPHQTHFSHIVPFEGANLDKQALEFIG 78 Query: 65 ITDEFL------KDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114 + D F ++ ++F + A + HN FD+ FINA +R Sbjct: 79 V-DPFHPFRFAKQEAEGLETVFKPIRKAVKIYGCTRAVLVGHNPSFDLSFINAASERTGV 137 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 K P DT ++A + + L + G + H A+ D+ +D++ + Sbjct: 138 KSPFHRFSTFDTATLAGLVY--GQTVLARAVQAAGFEWNTSEAHAAIYDAQRTADLFCTI 195 Query: 175 M 175 + Sbjct: 196 V 196 >gi|328958152|ref|YP_004375538.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4] gi|328674476|gb|AEB30522.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4] Length = 177 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 3/115 (2%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGIT++ ++ PSF ++ + FF E N +AHN FD G + L Sbjct: 50 VQIHGITEDDVQTAPSFPEVWEKIKPFFKE-NKLIVAHNLPFDRGVLQGCLDYYQLQQPH 108 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + S + + LN++C GI + + H AL DS+ + + + + Sbjct: 109 FQTLCTVQSSRKLITEIPNHKLNTVCDHLGIRLD--NHHNALEDSNACAAILLYL 161 >gi|242039735|ref|XP_002467262.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor] gi|241921116|gb|EER94260.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor] Length = 505 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 21/159 (13%) Query: 12 FDIETTGLD--SKNDRIIEIGA--------VELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 FD+ET+ + ++E GA VE+ Y+ R S +++ Sbjct: 44 FDVETSVPQRAGQGYALLEFGAILVCPRRLVEVASYATLVRPADPV-----SAVSAASVR 98 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120 +GIT + + P F + +D N + W HN +FD I I + P P Sbjct: 99 CNGITRDAVSGAPPFRDVADAVYDLLNGR--VWAGHNIVRFDSARIREAFTEIGRSPPQP 156 Query: 121 SRIIDTLSIARRKHPSSRNDLN--SLCKRYGITIS-HRS 156 +IDTL + ++ D+ SL +G+ HRS Sbjct: 157 KGMIDTLPLLTQRFGRRAGDMKMASLANYFGLGKQRHRS 195 >gi|195657335|gb|ACG48135.1| hypothetical protein [Zea mays] Length = 458 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 14/169 (8%) Query: 9 KIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPE-ALKLHGI 65 +IVF D+ET+ + ++E GAV + +F + P P+ + +GI Sbjct: 14 EIVFLDVETS---TPPCVLLEFGAVVVCSRRLVEVSSFATLVRPANLDALPDPTARSNGI 70 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRII 124 T L D P F + +D + + W HN FD I I + P P +I Sbjct: 71 TRGTLADAPPFGDVADMVYDVLHGR--VWAGHNIVHFDSMIIMDAFAEIGRPPPQPKAMI 128 Query: 125 DTLSIARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 DTL + + D L SL +G+ + +H +L D + DV+ Sbjct: 129 DTLPLLTQCFGPRAGDMKLASLANYFGLG---KQRHRSLDDVKMNIDVF 174 >gi|224372220|ref|YP_002606592.1| exonuclease family [Nautilia profundicola AmH] gi|223589909|gb|ACM93645.1| exonuclease family [Nautilia profundicola AmH] Length = 271 Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 6/113 (5%) Query: 6 KMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K++K+ VFD ETT + II V S FL P K S EA ++H Sbjct: 100 KIQKVGVFDTETTDIYG---YIISYAVVIQDMQSMDTEEIYDFLNPKA-KISEEAYEVHK 155 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 I E ++ KP+F+ EF F+ + + HN +D G + EL+R P Sbjct: 156 IKQEDIEHKPTFAEKKDEFLQIFDNLDM-VVGHNVLYDFGVLKRELERAEHFP 207 >gi|309779749|ref|ZP_07674506.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA] gi|308921488|gb|EFP67128.1| DNA polymerase III [Ralstonia sp. 5_7_47FAA] Length = 216 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+ + D I+ IGAV ++ + T+ ++ + P G + PE++ +H + + Sbjct: 39 VALDCETTGLNVRTDEIVSIGAVRIVGNRILTSEPLELLIRPQG-EMRPESICVHRLRNR 97 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 L S F + + + +FDV +N Sbjct: 98 DLDSGVSIEQAIHALLHFIGSR--PLVGYYLEFDVAMLN 134 >gi|77543206|gb|ABA87018.1| hypothetical protein [Vibrio cholerae] gi|259156499|gb|ACV96443.1| exonuclease, RNase T and DNA polymerase III [Vibrio cholerae Mex1] Length = 301 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 9/103 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64 ++ D ETTGL + ++ IIE+G V++L R + L + K PE + +L G Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITD+ ++ + S+ + + + +AHNA+FD F Sbjct: 113 ITDDMVRGQRIDDSLVAS----WLSDDPLVVAHNAQFDRPFFE 151 >gi|269837031|ref|YP_003319259.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] gi|269786294|gb|ACZ38437.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] Length = 966 Score = 41.6 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 19/169 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP---EALKLHGIT 66 + D+E TG+D + D IIEI A++ + +R ++ + P G P L GI Sbjct: 6 VALDLEATGMDPERDEIIEIAAIKFRNDRVLDR-WESLVRPRG----PIPFNITSLTGIG 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ P F + DF +N + + +FD+ + R+ ++PL DT Sbjct: 61 AKDVRRAPIFPVVAPRLRDFV--RNHPIVGQSPEFDIQMLAGAGLRL-QNPL-----YDT 112 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A P +L ++ R G+++ H +H A+ D V++ + Sbjct: 113 FQLATILIPDLPAYNLATIAARLGVSVPH--QHRAMADVETTMAVFLGL 159 >gi|227502443|ref|ZP_03932492.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49725] gi|306835006|ref|ZP_07468054.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49726] gi|227076812|gb|EEI14775.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49725] gi|304569114|gb|EFM44631.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49726] Length = 479 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 5/103 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + ++TTG+ RI+ I AV + + F L P+ LHG+T Sbjct: 114 VALTLQTTGIHPSTGRIVTIDAVAFDNAGDIGQRFHAVLKPDIDAGP---HHLHGLTVAD 170 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 ++ P+FS I + + + H+ + GFI AE +R Sbjct: 171 IEQAPAFSRILKSLDKLIDGRT--LVVHDIPYTWGFIVAEARR 211 >gi|163840229|ref|YP_001624634.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC 33209] gi|162953705|gb|ABY23220.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC 33209] Length = 327 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 7/121 (5%) Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 P + +HG+T + + +P F +F E F + +AHNA FD G + + Q ++ Sbjct: 52 PRNIAIHGVTPQQVASQPRFDRVFDEVQRFIGQDI--LVAHNAAFDTGVMRSA-QEVSAK 108 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMM 175 T+ +ARR + L + + G+ I+H H A+ D+ + + I ++ Sbjct: 109 SGPRYDYACTVMLARRSYSLPSYSLPFVAEAAGVPLINH---HDAVEDARACAGIMIDIV 165 Query: 176 V 176 Sbjct: 166 A 166 >gi|304383875|ref|ZP_07366332.1| exonuclease [Prevotella marshii DSM 16973] gi|304334953|gb|EFM01226.1| exonuclease [Prevotella marshii DSM 16973] Length = 163 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 9/164 (5%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D ET +++ + +G V ++ TF + P S +++HG+T Sbjct: 8 DFETA--NNERSSVCSVGLV-IVRNGAVADTFYSLIQPEPNYYSYWCVRVHGLTHADTDA 64 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P FS ++ + + +AHN++FD + A + D D S DTL+ ARR Sbjct: 65 APVFSEVWKQIEPLI--EGLPLVAHNSRFDESCLRAVFRVYQMDYPDYS-FFDTLTAARR 121 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P S + L+++ G + ++ H AL D+ + + K++ Sbjct: 122 TFPHLSNHQLHTVATECGYDL--KNHHHALADAEACAWIARKIL 163 >gi|303229201|ref|ZP_07316002.1| DNA polymerase III, epsilon subunit domain protein [Veillonella atypica ACS-134-V-Col7a] gi|303230531|ref|ZP_07317286.1| DNA polymerase III, epsilon subunit domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302514814|gb|EFL56801.1| DNA polymerase III, epsilon subunit domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302516214|gb|EFL58155.1| DNA polymerase III, epsilon subunit domain protein [Veillonella atypica ACS-134-V-Col7a] Length = 209 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 22/152 (14%) Query: 27 IEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI-TDEFLKDKPSFSSIFSEFWD 85 +E G + YS F F PE +++HGI E L +K F + W Sbjct: 27 VENGQITKKAYSLIKPPFMSF--------DPECIEIHGIEPKEVLHEK-----TFDQLWP 73 Query: 86 FFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-L 141 E + + IAHNAKFD+ + A L N P T+ I+R P N L Sbjct: 74 AIYENHLKGKIMIAHNAKFDMNVLRATLDYYNI-PWPELDYACTVKISRAVWPDLVNHKL 132 Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 N++ G+ H H AL D+ + V I+ Sbjct: 133 NTMAAYLGVEFKH---HYALDDAETCAKVAIE 161 >gi|270004806|gb|EFA01254.1| three prime repair exonuclease [Tribolium castaneum] Length = 232 Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 18/120 (15%) Query: 10 IVFDIETTGL---DSKNDRIIEIGAVELLDYSKTNRTFQ----------VFLCPN-GRKN 55 + FD+ETTGL + RI E AV + +T Q + LC N R Sbjct: 8 VFFDLETTGLPKFEENRTRITEFCAVAVRADHIGLQTAQKCKLPRVQSKLSLCFNPARAI 67 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNA-KFDVGFINAELQ 111 P+A KL G+++E L+ + FSS W NE+ +AHN +FD + AE++ Sbjct: 68 CPQATKLTGLSNELLEHQAHFSSQTLNVIKNWLDVNEKPICLVAHNGNEFDFPILRAEIE 127 >gi|227832962|ref|YP_002834669.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] gi|227453978|gb|ACP32731.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] Length = 205 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 24/176 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + D+ETT LD + +I+ IG V + +D S T G + + +A +H + Sbjct: 26 LAVDMETTSLDPRRGKIVSIGWVPVNGGVIDLSGAGYTVV-----RGAQVAEDA-HVHLL 79 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRII 124 T E + S ++ Q +AH A +VGFI A + + + P ++ Sbjct: 80 TQEVIDAGEELDSAVAQLRQAL--QGRALLAHFAALEVGFIEAASREVFGQRPR--LSVV 135 Query: 125 DTLSIARR------KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 DT ++ RR +P + L + RYG + H AL D+ +++Y+ Sbjct: 136 DTFALERRHMERMGTYPRGEDLRLPRVRARYG--LPRYGSHNALSDALACAELYLA 189 >gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC 824] gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing BRCT domain [Clostridium acetobutylicum ATCC 824] Length = 306 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 14/171 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ D ET + K + IG V + D ++ + + P + P + +HGI Sbjct: 1 MKFTAIDFETA--NEKRNSPCSIGIVVVKDGHVVEKSHHL-IRPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDPLDPSRII 124 ++ +P F ++ + +F++ IAHNA FD+ + +AEL I L I Sbjct: 58 PAMVEKEPEFDKVWEKIKHYFDDTLV--IAHNASFDISVLRKSAELYNIE---LPEFNYI 112 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ +AR + N LN++ G H H AL D+ S++ + + Sbjct: 113 CTMKLARNFYKGIENAKLNTVNNFLGYEFRH---HDALYDALACSNIMLSI 160 >gi|307546031|ref|YP_003898510.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581] gi|307218055|emb|CBV43325.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581] Length = 240 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 21/170 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGLD++ I+ IG V R + ++ R E++ H IT Sbjct: 51 VALDMETTGLDARRHAIVSIGVVPFTLGRIALRERRYWIVRPQRTLHAESVTFHHITHTD 110 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128 ++ P F I + + + + H + F++ ++ R+ + + P +IDT++ Sbjct: 111 IEQAPEFGEILGDLLEVLAGRLV--VVHYRHIERLFLDDSVKARLGEGLMFP--MIDTMA 166 Query: 129 IARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + R H P + L RYG+ + H AL D+ Sbjct: 167 VEARFHRQSWLARFKRWIGRPPASIRLYDSRTRYGLPLY--QGHHALTDA 214 >gi|116070417|ref|ZP_01467686.1| Exonuclease [Synechococcus sp. BL107] gi|116065822|gb|EAU71579.1| Exonuclease [Synechococcus sp. BL107] Length = 285 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 10/165 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGL+ +N +E+GA+ S+ Q FL P N+ E ++ I Sbjct: 57 LIIDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFLLP-AETNAAE--PINRIPAAV 113 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRIIDTLS 128 + + F + + + +AHNA FD F EL + + L + D Sbjct: 114 TRLSQPWKEALLWFQNLLDAADVL-VAHNAAFDRQWFGRGELPAVTQPWL--CSMEDMRW 170 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 A R+ SR + L YG+ + + H AL D L++V+ + Sbjct: 171 PADRQL-RSRPSVRDLALAYGVPV--WAAHRALTDCIYLAEVFAR 212 >gi|283769033|ref|ZP_06341939.1| exonuclease [Bulleidia extructa W1219] gi|283104390|gb|EFC05767.1| exonuclease [Bulleidia extructa W1219] Length = 186 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 20/178 (11%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGI 65 R + D+ET D ++ + IG + +L+ F + P N E K+HGI Sbjct: 3 RVVAVDVETASSDHRS--MCAIG-LSVLENGVLEEAFYSLIKPAANANHFEYFNTKVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPSRII 124 + ++D P+ ++ ++ +AHNA FDV I N L P+ Sbjct: 60 HPKDVQDAPTLPEVYPTIKSLL--ESGIVVAHNAVFDVSVIKNCCLN--TGCPVPKVTYF 115 Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 D++ ++RR P N L+++ + I + H H SD Y + + + + Sbjct: 116 DSVPLSRRAFPLLVNHKLDTVARYLKIPLDHH---------HAGSDAYACLAIVAAAM 164 >gi|229817290|ref|ZP_04447572.1| hypothetical protein BIFANG_02550 [Bifidobacterium angulatum DSM 20098] gi|229785079|gb|EEP21193.1| hypothetical protein BIFANG_02550 [Bifidobacterium angulatum DSM 20098] Length = 463 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 76/197 (38%), Gaps = 44/197 (22%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD-------------------------YSKTNRTFQV 46 DIETTG D D II++G E ++ Y ++ +F V Sbjct: 235 IDIETTGTDPARDYIIDVG-FEYMNMMSARPADFPSEYTYEQSSYTPGCAYGQSRLSFGV 293 Query: 47 FLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD-----FFNEQNAEWIAHNAKF 101 N + +P K GI D + S IF E+ + ++AHNA F Sbjct: 294 TDA-NAKVGNPFIAKFTGI-DVRERGAASGCRIFDEWPEAQLGLLQRLVQQPYVAHNATF 351 Query: 102 DVGFI------NAELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG-I 150 + GF AE R D + SR D S+ +HP N L++ KR G + Sbjct: 352 EHGFFMLNVTGYAEAYRAGGIVIVDTMPMSRQWDPGSVETPEHPYGDNTLDAYAKRQGAL 411 Query: 151 TISHRSKHGALLDSHLL 167 +H L D+H++ Sbjct: 412 QADQNERHLGLEDAHIM 428 >gi|218130099|ref|ZP_03458903.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697] gi|317476592|ref|ZP_07935837.1| exonuclease [Bacteroides eggerthii 1_2_48FAA] gi|217987603|gb|EEC53931.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697] gi|316907188|gb|EFV28897.1| exonuclease [Bacteroides eggerthii 1_2_48FAA] Length = 256 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 14/118 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + FD+ETTG + +DRI+EI +++ + SKT R P EA +HGI Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTMRINPEMHIP------AEASAVHGI 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122 DE + D P+F + + + + + N+ +FD+ + E R + D +D SR Sbjct: 64 YDEDVADCPTFKEVARSIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRADVD-IDMSR 118 >gi|187777136|ref|ZP_02993609.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC 15579] gi|187774064|gb|EDU37866.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC 15579] Length = 309 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIIEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F I+ + +FN N IAHNA FD+ + + L+ N + I T Sbjct: 58 PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLELYN-IKMPSFEYICT 114 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ + + N LN++ G H H AL D+ S++ + + Sbjct: 115 MKLSKNFYSNIDNAKLNTVNNFLGYKFQH---HDALADAMACSNILLNI 160 >gi|241662069|ref|YP_002980429.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D] gi|240864096|gb|ACS61757.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii 12D] Length = 216 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+ + D I+ IGAV ++ + T+ ++ + P G + PE++ +H + + Sbjct: 39 VALDCETTGLNVRTDEIVSIGAVRIVGNRILTSERMELLIRPQG-EMRPESICVHRLRNR 97 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 L S F + + + +FDV +N Sbjct: 98 DLDSGVSIEQAIHALLHFIGSR--PLVGYYLEFDVAMLN 134 >gi|260773955|ref|ZP_05882870.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] gi|260610916|gb|EEX36120.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] Length = 236 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 36/169 (21%), Positives = 77/169 (45%), Gaps = 12/169 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ET+G++++ D I+ +G V++ LD + ++F+C + + + ++ +++ IT + Sbjct: 53 VAFDFETSGVNARQDHILSLGWVDMTLDEIDLAASEELFVC-HPQFITAQSAQINHITPK 111 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + F + H + + F+ LQ+ P IDTL Sbjct: 112 ILSAGLTLDEAMDRL--FIRLAGKVALVHGSCIERAFVERYLQQRYGLEQFPCVWIDTLQ 169 Query: 129 IARRKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 I ++ + D L+ + RYG + S H A +D+ ++++ Sbjct: 170 IEKQMTYQGQTDIQRSFQLHDVRARYG--LPQYSAHSAAMDALATAELF 216 >gi|148272897|ref|YP_001222458.1| DNA polymerase III subunit epsilon [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830827|emb|CAN01769.1| putative DNA polymerase III , epsilon subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 233 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 10/147 (6%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG+D + RI+ + +LD +L G + A +HG+T E + Sbjct: 12 FDLETTGVDVETARIVT-ACIVVLDAQGEVLERHDWLADPGVEIPAGAAAIHGVTTERAR 70 Query: 72 DKPSFS-----SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSRIID 125 + I + F A + +NA +D+ +N E R +PL D +ID Sbjct: 71 AAGRDAAVVVLEIVTTIRAMFARGLA-LVVYNAPYDLTLLNREAVRHGVEPLRDTGPVID 129 Query: 126 TLSI--ARRKHPSSRNDLNSLCKRYGI 150 L I A + + L+ + YG+ Sbjct: 130 PLVIDKAVDTYRRGKRTLSVAAEHYGV 156 >gi|262194028|ref|YP_003265237.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] gi|262077375|gb|ACY13344.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum DSM 14365] Length = 180 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 15/154 (9%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNS-PEALK 61 M+ +VF D ETTGLD + I+EI A+ + + +T R + + P +++ PEAL+ Sbjct: 1 MQPLVFIDCETTGLDPERHEILEIAAIRV--HPQTLDEERELVLRVRPERLEDADPEALE 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LD 119 ++G D S +E + A HN FD F+ + P LD Sbjct: 59 VNGYRRRAWADAVSLGDAMAELAPML--EGAVLAGHNVAFDRRFLEVAWDCVGHRPETLD 116 Query: 120 PSRIIDTLSIARRKHPSSRND---LNSLCKRYGI 150 +DT ++A + D L +C G+ Sbjct: 117 -HHALDTAALAFPLLMAGEIDSLSLTPVCAHLGV 149 >gi|156974738|ref|YP_001445645.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116] gi|156526332|gb|ABU71418.1| hypothetical protein VIBHAR_02456 [Vibrio harveyi ATCC BAA-1116] Length = 249 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+++ D I+ IG V L + + + + PN R+ + E++ +HGITD Sbjct: 60 VSVDFETTGLNAEQDAILTIGLVPFTLGRVQCSGSRHWVVNPN-RELNEESVVIHGITDS 118 Query: 69 FLKDKPSFSSIFSEFWD 85 +K+ P I D Sbjct: 119 EVKNAPQLEQILDAILD 135 >gi|332878163|ref|ZP_08445892.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683901|gb|EGJ56769.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1486 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 19/136 (13%) Query: 10 IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPE 58 ++FD ETTGL DS N R ++I A +L D Q FL P+G + Sbjct: 3 LIFDTETTGLPRNYNAPISDSNNWPRAVQI-AWQLHDQWGALIEHQDFLIAPDGFDIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEW-IAHNAKFDVGFINAELQRIN- 114 A K+HGI+ L +K +E + FNE A++ + N FD+ + AE R Sbjct: 62 AEKVHGIST-LLAEKQGVP--IAEVFAAFNEALSKAQYVVGQNIGFDINIMGAEFYRYGV 118 Query: 115 KDPLDPSRIIDTLSIA 130 + PLD +IDT + A Sbjct: 119 ESPLDKLPVIDTCTEA 134 >gi|218514224|ref|ZP_03511064.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3] Length = 312 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 48/107 (44%), Gaps = 16/107 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 +V D ETTGL+ ++D IIEIGAV D ++ L R E +L GI Sbjct: 61 VVLDTETTGLNHRSDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIPREVTRLTGI 120 Query: 66 TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 TD ++ D S S + E D IAHNA FD F A Sbjct: 121 TDAMVEGQVIDIRSLSDLI-EPADLI-------IAHNAGFDRPFCEA 159 >gi|189460117|ref|ZP_03008902.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136] gi|189433159|gb|EDV02144.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136] Length = 258 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 9/110 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITD 67 + FD+ETTG + DRI+EI +++ + ++ ++T +V N + PEA +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEESKTMRV----NPEMHIPEASTAIHGIHD 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 E + D P+F I + + + A+ N+ +FDV + E R D Sbjct: 66 EDVADCPTFKEIAKDIAR--DLEGADIAGFNSNRFDVPVLVEEFLRAGID 113 >gi|313204261|ref|YP_004042918.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter propionicigenes WB4] gi|312443577|gb|ADQ79933.1| Exonuclease RNase T and DNA polymerase III [Paludibacter propionicigenes WB4] Length = 255 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 29/120 (24%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS------PE----- 58 + FD+ETTG + DRI+EI Y K + PNGR+ + PE Sbjct: 10 VFFDLETTGTNIVTDRIVEIA------YHKVS--------PNGREETKSIRINPEMHIPE 55 Query: 59 -ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 + +HGI D + D P+F ++ E + + + +N+ +FD+ + EL R + D Sbjct: 56 SSSAIHGIYDADVADCPTFKAVAKEI--VRDIEGCDLAGYNSNRFDIPLLAEELLRADID 113 >gi|88703768|ref|ZP_01101484.1| DNA polymerase III, epsilon subunit [Congregibacter litoralis KT71] gi|88702482|gb|EAQ99585.1| DNA polymerase III, epsilon subunit [Congregibacter litoralis KT71] Length = 203 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%) Query: 10 IVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IV D ETTGL +N I+ +G + ++ + ++ + P R S EA +HGIT+ Sbjct: 19 IVLDTETTGLPDENGLPDIVTLG-ITVVRQREIAKSVEFKTRPKKRI-SEEAQSIHGITN 76 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 E + SF S +S ++ +Q + HNA FD + + R N Sbjct: 77 EQAAEFKSFDSQWSHMAEYLKDQLI--VIHNASFDWPILRDHVVRYN 121 >gi|86133336|ref|ZP_01051918.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] gi|85820199|gb|EAQ41346.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] Length = 359 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 64/163 (39%), Gaps = 27/163 (16%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDEF 69 + DIETTG + I EI + Y Q N K E ++L GI ++ Sbjct: 4 ILDIETTGGKFNEEGITEIA---IYKYDGQEIVDQFISLINPEKPIQEFVVRLTGINNKM 60 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---------PLDP 120 LK+ P F + + +N +AHN+ FD + E R+ D L Sbjct: 61 LKNAPKFYEVAKRIVEI--TKNCIIVAHNSAFDYRILRTEFDRLGFDFERNTLCTVELSQ 118 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS--HRSKHGAL 161 + I+D PS L L K GI IS HR+ AL Sbjct: 119 ALILD--------QPSY--SLGKLTKSLGIPISDRHRATGDAL 151 >gi|149910647|ref|ZP_01899284.1| DNA polymerase III subunit epsilon [Moritella sp. PE36] gi|149806274|gb|EDM66250.1| DNA polymerase III subunit epsilon [Moritella sp. PE36] Length = 239 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 5/138 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLDS+ + II IG V R Q + K ++ +HGIT Sbjct: 49 VALDFETTGLDSEQNSIISIGLVPFNLQRIFCRQAQHWYIEPEDKLKENSIIIHGITHTD 108 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 LK P I D + + H + + F + L+ IN+ + P +IDT+ Sbjct: 109 LKGAPDLLRILEPVLDALAGKVV--VVHYRRIERDFFDNHLRSFINEGIVFP--VIDTMQ 164 Query: 129 IARRKHPSSRNDLNSLCK 146 I S N SL K Sbjct: 165 IEADVQESQNNSFFSLFK 182 >gi|51597447|ref|YP_071638.1| bacteriophage protein [Yersinia pseudotuberculosis IP 32953] gi|186896564|ref|YP_001873676.1| exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis PB1/+] gi|51590729|emb|CAH22374.1| putative conserved bacteriophage protein [Yersinia pseudotuberculosis IP 32953] gi|186699590|gb|ACC90219.1| Exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis PB1/+] Length = 233 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 20/180 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGLD+ + I+EI ++ + N + P G S + +HGIT++ Sbjct: 61 LILDTETTGLDNAAE-IVEISIIDCMG----NVLLDTLIKPLGFIPS-DVEAIHGITNKM 114 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINK---DPLDPSRII 124 + + P + I +F + +N ++A+N++FD I +AE + D S Sbjct: 115 VDNAPHWCDIHEKFIEIIKSRN--FVAYNSRFDTRLIYQSAEFSGVTTGADDIASASGNC 172 Query: 125 DTLSIAR--RKHPSSRNDL--NSLCKRYGI--TISHRSKHGALLDSHLLSDVYIKMMVGG 178 L AR + S ++D +L G I+ + H AL D V IK M GG Sbjct: 173 AMLEYARFHGQWDSRQSDFKWQTLIAAAGQMNVITEGASHRALSDCKTTLGV-IKAMAGG 231 >gi|55822780|ref|YP_141221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus thermophilus CNRZ1066] gi|55738765|gb|AAV62406.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066] Length = 828 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K+ + + D+E T S II++G V ++ + F + P+ + ++ + Sbjct: 1 MSEKSTNKYAIVDLEATS-ASSTACIIQVGIV-IMQNGRVIDEFASDVNPHQKLDN-HIV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ ++ ++AHN KFD + AE + L Sbjct: 58 HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLL-AEALFMEGFELRT 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +DT+ +A+ +P+ + +L+ L + + ++ H A+ D+ + + +M Sbjct: 115 PR-VDTVELAQVFYPTLEQYNLSYLSRVLNLDLAQ--AHTAIEDARATGKLLLHLM 167 >gi|319952129|ref|YP_004163396.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM 14237] gi|319420789|gb|ADV47898.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM 14237] Length = 457 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 11/167 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK-LHGITDEF 69 + DIETTG + ++I EI + Y F + P P + L GI + Sbjct: 4 IIDIETTGNGIQGNKITEISIFKYDGYDVIEE-FTTLINPEAE--IPYFITGLTGIDNTM 60 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +++ P FS + + E ++AHN FD I E + I D + + + T+ + Sbjct: 61 VRNAPKFSEVADQILKITEE--TIFVAHNVSFDYNIIKHEFKAIGVDFI--RQKLCTVRL 116 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R+ P + L LC I ++ R H A D+ + ++ K++ Sbjct: 117 SRKLFPGYNSYSLGKLCTALKIPLTDR--HRARGDAEATTILFEKLL 161 >gi|189235963|ref|XP_969322.2| PREDICTED: similar to p15-2a protein [Tribolium castaneum] Length = 292 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 18/120 (15%) Query: 10 IVFDIETTGL---DSKNDRIIEIGAVELLDYSKTNRTFQ----------VFLCPN-GRKN 55 + FD+ETTGL + RI E AV + +T Q + LC N R Sbjct: 8 VFFDLETTGLPKFEENRTRITEFCAVAVRADHIGLQTAQKCKLPRVQSKLSLCFNPARAI 67 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNA-KFDVGFINAELQ 111 P+A KL G+++E L+ + FSS W NE+ +AHN +FD + AE++ Sbjct: 68 CPQATKLTGLSNELLEHQAHFSSQTLNVIKNWLDVNEKPICLVAHNGNEFDFPILRAEIE 127 >gi|157375459|ref|YP_001474059.1| DNA polymerase III subunit epsilon [Shewanella sediminis HAW-EB3] gi|157317833|gb|ABV36931.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis HAW-EB3] Length = 238 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 5/121 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLD+ + II IG V L + F+ P K +++ +HGIT Sbjct: 49 VALDFETTGLDANQNSIISIGLVPFTLQRIACRQAKHWFVTPED-KLQEDSIIIHGITHS 107 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK P I + D + + H + + F +A L+ + K+ + ++DT+ Sbjct: 108 DLKGAPDLLRILEQLLDELAGKIV--VVHYRRIERDFFDAALRSLIKEGI-VFPVVDTMQ 164 Query: 129 I 129 I Sbjct: 165 I 165 >gi|312131463|ref|YP_003998803.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella byssophila DSM 17132] gi|311908009|gb|ADQ18450.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella byssophila DSM 17132] Length = 270 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 9/131 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP-EALKLHGITDE 68 + D+ETTG++ DRI+EI + LD + RT +V N P E +HGI DE Sbjct: 14 IIDLETTGVNITRDRIVEICIAKANLDGTVETRTKKV----NPTIPIPLETSLIHGIYDE 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDT 126 + ++P+F + F + N +FD+ + E R++ + D ++ID Sbjct: 70 DVANEPTFKQLARSLAQFLEGCDLAGFNSN-RFDIPMLVEEFLRVDSNLFDIKNRKLIDV 128 Query: 127 LSIARRKHPSS 137 I P + Sbjct: 129 QRIFHLMEPRT 139 >gi|120597914|ref|YP_962488.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. W3-18-1] gi|120558007|gb|ABM23934.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. W3-18-1] Length = 301 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 9/103 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64 ++ D ETTGL + ++ IIE+G V++L R + L + K PE + +L G Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITD+ ++ + S+ + + + +AHNA+FD F Sbjct: 113 ITDDMVQGQHIDDSLVAS----WLSDDPLVVAHNAQFDRPFFE 151 >gi|312278202|gb|ADQ62859.1| ATP-dependent DNA helicase [Streptococcus thermophilus ND03] Length = 828 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K+ + + D+E T S II++G V ++ + F + P+ + ++ + Sbjct: 1 MSEKSTNKYAIVDLEATS-ASSTACIIQVGIV-IMQNGRVIDEFASDVNPHQKLDN-HIV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ ++ ++AHN KFD + AE + L Sbjct: 58 HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLL-AEALFMEGFELRT 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +DT+ +A+ +P+ + +L+ L + + ++ H A+ D+ + + +M Sbjct: 115 PR-VDTVELAQVFYPTLEQYNLSYLSRVLNLDLAQ--AHTAIEDARATGKLLLHLM 167 >gi|297623751|ref|YP_003705185.1| exonuclease RNase T and DNA polymerase III [Truepera radiovictrix DSM 17093] gi|297164931|gb|ADI14642.1| Exonuclease RNase T and DNA polymerase III [Truepera radiovictrix DSM 17093] Length = 177 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 8/99 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGL K+ +IE+ L ++ + P + +P A ++H IT Sbjct: 14 LILDTETTGL--KSAEVIELA----LLSTRGEVLLDTLVRPKVMRLNPYAARVHRITLAE 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 L D+P++ + E + A +A NA FD + A Sbjct: 68 LADRPTWPEVLPELRRL--AERATVLAWNAPFDARMLEA 104 >gi|255011868|ref|ZP_05283994.1| putative exonuclease [Bacteroides fragilis 3_1_12] gi|313149703|ref|ZP_07811896.1| DNA polymerase III [Bacteroides fragilis 3_1_12] gi|313138470|gb|EFR55830.1| DNA polymerase III [Bacteroides fragilis 3_1_12] Length = 175 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 14/169 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I F+ T ++S +G V + D T+ + + P L +HGIT E Sbjct: 8 IDFETATGYMESA----CAVGIVTVTDGEITDEYYSLIQPPENEYWRANIL-VHGITPEM 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKDP-LDPSRIIDT 126 + P F +I+ E Q +AHN +FD + + R++ D L P T Sbjct: 63 TESLPGFHAIYPEIKKRL--QGKVVVAHNEQFDRNVLKRTMRMYRLDYDELLLPEHWECT 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I R N L++ C+R GI + H H AL D+ + +Y+ + Sbjct: 121 CRIYRSLGYKPVN-LSACCEREGIELKH---HEALSDARGCAKLYLNYL 165 >gi|148543638|ref|YP_001271008.1| exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri DSM 20016] gi|184153052|ref|YP_001841393.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112] gi|227363391|ref|ZP_03847517.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3] gi|227545077|ref|ZP_03975126.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A] gi|300909253|ref|ZP_07126714.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri SD2112] gi|325682001|ref|ZP_08161519.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri MM4-1A] gi|148530672|gb|ABQ82671.1| Exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri DSM 20016] gi|183224396|dbj|BAG24913.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112] gi|227071580|gb|EEI09877.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3] gi|227184926|gb|EEI64997.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A] gi|300893118|gb|EFK86477.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri SD2112] gi|324978645|gb|EGC15594.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri MM4-1A] Length = 179 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 5/113 (4%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI + +++ P F ++ F+ IAHN +FD + L+ N + + Sbjct: 52 QIHGIHERDVQNAPDFPEVWEHINQFYTPDKLV-IAHNNRFDNSVLRNTLEHYNIE-VPA 109 Query: 121 SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + +DT++ +R+ P N LN++C I + H H AL D+ +++ + Sbjct: 110 YQTLDTVASSRQLIPGLTNYKLNTVCDALNIDLHHH--HNALDDAQACANILL 160 >gi|153829717|ref|ZP_01982384.1| Gp39 [Vibrio cholerae 623-39] gi|148874796|gb|EDL72931.1| Gp39 [Vibrio cholerae 623-39] Length = 192 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 37/181 (20%) Query: 11 VFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + D ETTGLDSK+ +I+E+ A+ EL+ YS R P G + EA ++HGI Sbjct: 11 ILDTETTGLDSKS-QIVEVTAICAKSGELI-YSSLVR-------PQGFIPA-EATRIHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRII 124 T+ + D P+F I +N I +NA FD FI + + + LD Sbjct: 61 TNSDVADAPTFLDIIYPL--SLALRNRTGIIYNADFDSRMFIQSYERNLQISHLDLRSAY 118 Query: 125 DTLSIARRKHPSSRN-------------------DLNSLCKRYGITISHRSKHGALLDSH 165 L + N L + C++ GI IS + H AL D Sbjct: 119 FALKHKLLNSQCAMNWYAQFWGEFDTTNGGYRWQRLTNACQQQGIDISDLTAHRALADCE 178 Query: 166 L 166 + Sbjct: 179 M 179 >gi|149190815|ref|ZP_01869080.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] gi|148835377|gb|EDL52349.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1] Length = 239 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 5/126 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N++ + D ETTGL+ D I+ IG V + + + P + E++ +H Sbjct: 45 NELEFVALDFETTGLNPDKDGILSIGLVPFNASRIRLKQAAHWTIRPKAKLEE-ESVVIH 103 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + D P+ + + + + H + GF+N+ L+R+ + ++ + Sbjct: 104 GITHNDILDAPTLDEVLGDVLSALAGKII--VVHYRPIERGFLNSALKRMIGEGIE-FPV 160 Query: 124 IDTLSI 129 +DT+ I Sbjct: 161 VDTMQI 166 >gi|323143472|ref|ZP_08078155.1| putative DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT 12066] gi|322416757|gb|EFY07408.1| putative DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT 12066] Length = 321 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 22/114 (19%) Query: 6 KMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYS-------KTNRTFQVFLCPNGRKNSP 57 ++ +VF D ETTG+D ++IIE+G V + YS +R + F P G+K Sbjct: 74 RVHHVVFLDTETTGMDCNQEKIIELGMVR-VTYSFDRKLMLSIDRIYDEFEDP-GKKIPL 131 Query: 58 EALKLHGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 E +L ITDE + D S S I + +AHNAKFD F + Sbjct: 132 EIQQLTHITDEMVAGHRFDNDSVSQILA--------GRPLVVAHNAKFDRPFFD 177 >gi|78186412|ref|YP_374455.1| exonuclease [Chlorobium luteolum DSM 273] gi|78166314|gb|ABB23412.1| Exonuclease [Chlorobium luteolum DSM 273] Length = 197 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 25/177 (14%) Query: 7 MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHG 64 M+K++ FD+ETTG+D II+ + ++ +F++ + P+ G EAL + G Sbjct: 1 MKKVLWFDLETTGIDPDRHGIIQFAGLAEIE-GVVAESFEIKMQPHEGAMIEDEALAVSG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFN------EQNAEWI--AHNAKFDVGFINAELQR---- 112 + E + + + F E+N ++ +N +FD+ F++ +R Sbjct: 60 FSREQIASFTPHAEAYKAIDGFLARHVSRFERNDKFYPAGYNVRFDLDFLSRMFRRYDQY 119 Query: 113 -----INKDPLDPSRIIDTLS-IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 IN LDP I++ + + R P+ + L ++C+ G+ + + H AL D Sbjct: 120 GLGSFINWRSLDPQPILNIMEYMGRLSLPNHK--LQTVCEHLGVRLE--NAHDALSD 172 >gi|258624141|ref|ZP_05719091.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258583572|gb|EEW08371.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 289 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 14/99 (14%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63 + +V D ETTGL + D++IE+ ++ +V LC R P+A+ +H Sbjct: 104 LEPLVLDTETTGLGER-DQVIELAVTDIRG--------EVLLCTRLRPTVGIDPQAMGVH 154 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 GIT+ L ++P+++ + + ++ + N+ FD Sbjct: 155 GITEAELSNEPTWTQVAPALARLLSGRHL--VIFNSSFD 191 >gi|55820864|ref|YP_139306.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311] gi|55736849|gb|AAV60491.1| ATP-dependent DNA helicase, truncated [Streptococcus thermophilus LMG 18311] Length = 557 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K+ + + D+E T S II++G V ++ + F + P+ + ++ + Sbjct: 12 MSEKSTNKYAIVDLEATS-ASSTACIIQVGIV-IMQNGRVIDEFASDVNPHQKLDN-HIV 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ ++ ++AHN KFD + AE + L Sbjct: 69 HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLL-AEALFMEGFELRT 125 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +DT+ +A+ +P+ + +L+ L + + ++ H A+ D+ + + +M Sbjct: 126 PR-VDTVELAQVFYPTLEQYNLSYLSRVLNLDLAQ--AHTAIEDARATGKLLLHLM 178 >gi|77461407|ref|YP_350914.1| exonuclease [Pseudomonas fluorescens Pf0-1] gi|77385410|gb|ABA76923.1| putative DNA poymerase [Pseudomonas fluorescens Pf0-1] Length = 235 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 12/102 (11%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEAL 60 + R +V D+ETTGL+ DR++ IGAV + +D+S+ RT Q + K P L Sbjct: 38 EQRWVVLDLETTGLNLSKDRVLSIGAVVIEDGAIDFSQQFERTLQC----HELKLGPSVL 93 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 +HG+ + + E +F + +A +A FD Sbjct: 94 -IHGLAPSAIAAGSEPTEALVELLEFIGDSPV--LAFHASFD 132 >gi|194468196|ref|ZP_03074182.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri 100-23] gi|194453049|gb|EDX41947.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri 100-23] Length = 178 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 5/113 (4%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI + +++ P F ++ F+ IAHN +FD + L+ N + + Sbjct: 51 QIHGIHERDVQNAPDFPEVWEHINQFYTPDKLV-IAHNNRFDNSVLRNTLEHYNIE-VPA 108 Query: 121 SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + +DT++ +R+ P N LN++C I + H H AL D+ +++ + Sbjct: 109 YQTLDTVASSRQLIPGLTNYKLNTVCDALNIDLHHH--HNALDDAQACANILL 159 >gi|160689394|gb|ABX45555.1| polymerase C [Bacillus tequilensis] Length = 259 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +++ + + +IDTL + R +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190 + D+ + + +KM+ ++ I + + NE+ Sbjct: 59 IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90 >gi|309810273|ref|ZP_07704115.1| exonuclease [Dermacoccus sp. Ellin185] gi|308435765|gb|EFP59555.1| exonuclease [Dermacoccus sp. Ellin185] Length = 534 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 13/118 (11%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +LHGI + ++D+PS++ +E +F + ++HNA FD+G I D + Sbjct: 57 QLHGIDADTVRDQPSWAGRLTEIVEFIGDDIV--VSHNASFDIGVIR---YACAADGIAW 111 Query: 121 SRI--IDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 RI TL ARR + PS R L + YG ++ H AL D+ V + M Sbjct: 112 PRIDFFCTLVAARRHLRLPSYR--LPFVLDAYGAEVN--DHHHALADAEAAGRVAVLM 165 >gi|94501813|ref|ZP_01308325.1| DNA polymerase III subunit epsilon [Oceanobacter sp. RED65] gi|94426034|gb|EAT11030.1| DNA polymerase III subunit epsilon [Oceanobacter sp. RED65] Length = 238 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 34/188 (18%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-----RKNSP---EALK 61 + D ETTGL+ +D II IG V + Q C N R N+P E++ Sbjct: 47 MALDFETTGLNPNDDSIISIGMVPF--------SLQRIYCNNAVYWVVRPNTPLSEESIL 98 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H I ++ P + + +E + H + + F+N L+ + L Sbjct: 99 IHHIKHSEIQSAPRIERLLEPLLEKLSEHIL--VVHFQRIERLFLNNTLKEHLGETLQ-F 155 Query: 122 RIIDTLSIARRK-------------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 +IDT+ I ++ P LN+ +RY ++ H AL+D+ + Sbjct: 156 PLIDTMEIEKKALKARQGLTGRILNKPVGGIRLNNCRERY--SLPQYQSHNALIDAQATA 213 Query: 169 DVYIKMMV 176 +++I + Sbjct: 214 ELFIAQVA 221 >gi|148545634|ref|YP_001265736.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1] gi|148509692|gb|ABQ76552.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1] Length = 236 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 18/175 (10%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEAL 60 + R +V D+ET+GL+ D+++ IGAV + +D+++ RT P + N+ ++ Sbjct: 38 EQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR---PLQKTNA--SV 92 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HG+ L + + DF N+ +A +A FD + L+ L Sbjct: 93 LIHGLGPSALAAGCDPAEALLDLLDFIG--NSPVLAFHAPFDQRMLARALKETLGHRLQ- 149 Query: 121 SRIIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S +D +A +P + L+ R+G+ + R H A D+ + +++ + Sbjct: 150 SMFLDVAELAPMLNPDTVLREAGLDDWVARFGLQVEER--HHASADAQVTAELAL 202 >gi|330446342|ref|ZP_08309994.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490533|dbj|GAA04491.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 249 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 5/121 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL++ D II +G V + + Q ++ K E++ +HGIT Sbjct: 60 VALDFETTGLNANKDDIISVGLVPFTIHRIYCKQSQHWVVKPKSKLDEESVIIHGITHSD 119 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128 ++ P I D + + H + F++ L R+N+ P ++DTL+ Sbjct: 120 VQTAPDLRRILESVLDALAGKVV--VVHYKAIERQFMDKALHVRLNEGIQFP--VVDTLA 175 Query: 129 I 129 I Sbjct: 176 I 176 >gi|160689328|gb|ABX45522.1| polymerase C [Bacillus subtilis] gi|160689330|gb|ABX45523.1| polymerase C [Bacillus subtilis] gi|160689334|gb|ABX45525.1| polymerase C [Bacillus subtilis] gi|160689342|gb|ABX45529.1| polymerase C [Bacillus subtilis] gi|160689374|gb|ABX45545.1| polymerase C [Bacillus subtilis] gi|160689376|gb|ABX45546.1| polymerase C [Bacillus subtilis] gi|160689378|gb|ABX45547.1| polymerase C [Bacillus subtilis] gi|160689404|gb|ABX45560.1| polymerase C [Bacillus subtilis] gi|160689422|gb|ABX45569.1| polymerase C [Bacillus subtilis] gi|160689426|gb|ABX45571.1| polymerase C [Bacillus subtilis] gi|160689428|gb|ABX45572.1| polymerase C [Bacillus subtilis] gi|160689430|gb|ABX45573.1| polymerase C [Bacillus subtilis] gi|160689436|gb|ABX45576.1| polymerase C [Bacillus subtilis] gi|160689440|gb|ABX45578.1| polymerase C [Bacillus subtilis] gi|160689450|gb|ABX45583.1| polymerase C [Bacillus subtilis] gi|160689460|gb|ABX45588.1| polymerase C [Bacillus subtilis] Length = 259 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +++ + + +IDTL + R +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190 + D+ + + +KM+ ++ I + + NE+ Sbjct: 59 IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90 >gi|160689348|gb|ABX45532.1| polymerase C [Bacillus subtilis subsp. spizizenii] Length = 259 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +++ + + +IDTL + R +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190 + D+ + + +KM+ ++ I + + NE+ Sbjct: 59 IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90 >gi|294787077|ref|ZP_06752331.1| DNA polymerase III, epsilon subunit [Parascardovia denticolens F0305] gi|294485910|gb|EFG33544.1| DNA polymerase III, epsilon subunit [Parascardovia denticolens F0305] Length = 244 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 19/187 (10%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPEALKLHGITDE 68 FD ETTG D I V L D + +R Q + P G +P A +++G TD Sbjct: 18 FDTETTGACYGTDAIASASLV-LRDPAAGFPGDRISQWIINP-GVPMNPFASQVNGFTDA 75 Query: 69 FLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-- 122 +L+ D+ +E + +A+NA FDV ++ +L+R+ L+ Sbjct: 76 YLQEHGQDQAEAIGQIAETILLAQSKRIPLLAYNAPFDVAMLDGDLRRLGDRNLNQQTQD 135 Query: 123 ------IIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+D L + R H + L YG+ H S H A D+ D+ M+ Sbjct: 136 LGHELLIVDPLVLDRSVSHRKGKRTLTDTTYYYGVQ-PHGSFHDATADTIAAVDLVAPMV 194 Query: 176 VGGSQIN 182 Q+ Sbjct: 195 TLYPQVG 201 >gi|315226729|ref|ZP_07868517.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] gi|315120861|gb|EFT83993.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] Length = 292 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 19/187 (10%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPEALKLHGITDE 68 FD ETTG D I V L D + +R Q + P G +P A +++G TD Sbjct: 66 FDTETTGACYGTDAIASASLV-LRDPAAGFPGDRISQWIINP-GVPMNPFASQVNGFTDA 123 Query: 69 FLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR-- 122 +L+ D+ +E + +A+NA FDV ++ +L+R+ L+ Sbjct: 124 YLQEHGQDQAEAIGQIAETILLAQSKRIPLLAYNAPFDVAMLDGDLRRLGDRNLNQQTQD 183 Query: 123 ------IIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+D L + R H + L YG+ H S H A D+ D+ M+ Sbjct: 184 LGHELLIVDPLVLDRSVSHRKGKRTLTDTTYYYGVQ-PHGSFHDATADTIAAVDLVAPMV 242 Query: 176 VGGSQIN 182 Q+ Sbjct: 243 TLYPQVG 249 >gi|218288682|ref|ZP_03492945.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius LAA1] gi|218241040|gb|EED08216.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius LAA1] Length = 218 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 14/185 (7%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEAL-KLHGITDE 68 V D+ET+G D+I+ + + S+ + +F + + + P + +L G++ + Sbjct: 32 VLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAVVRHDDVADVPSHIWELTGLSPQ 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF---INAELQRINKDPLDPSRIID 125 + D + + + W+AH+ + D+ F ++ L R+ PL + Sbjct: 92 AVLDGEPLDAALRRALELGAGRV--WVAHHVRHDLSFLQRVSDALWRLRLRPLAIDTAVV 149 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++AR P + L+ CK G+ + R H A D + + V+ K M + G Sbjct: 150 GQALARAPRPLT---LDEACKWLGVPVIGR--HQADADVRMTAAVWRKEM--ELCMRLGL 202 Query: 186 KTNED 190 +T +D Sbjct: 203 QTVKD 207 >gi|152998334|ref|YP_001343169.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1] gi|150839258|gb|ABR73234.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1] Length = 236 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 20/167 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPEALKLHGITDE 68 + D+ETTGLD D II +G + L + + ++ P N+ E++ +H IT Sbjct: 52 LALDLETTGLDPSQDEIISLGLIPLNHKIIRCQGAKYWMAKPECSLNA-ESVTIHEITHS 110 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P +I E Q + H + F+ +I PL ++DT+ Sbjct: 111 ELEEAPRLHAILDEILLALTHQVI--VVHCVAIERQFLLKASMKIYGYPLY-FPVLDTMD 167 Query: 129 IARR-----------KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 I R+ + PS R L++ +RY + H AL D+ Sbjct: 168 IERQVTFKPWWKRFGRRPSLR--LDACRQRY--KLPRYKAHHALTDA 210 >gi|329770482|ref|ZP_08261860.1| hypothetical protein HMPREF0433_01624 [Gemella sanguinis M325] gi|328836231|gb|EGF85900.1| hypothetical protein HMPREF0433_01624 [Gemella sanguinis M325] Length = 614 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 18/158 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 V DIE T ++ II+ A +L +D+ K + + ++ P ++ S + GIT E Sbjct: 8 VVDIELT----EDKEIIQFSATKLSIDFKKIS-SIDYYVKP-KKEISSFVSEFTGITPEM 61 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+DKP F I +++ ++ + H + D I ++ + P R +DT+ + Sbjct: 62 LEDKPLFKEIAYGIYEYI--KDCTLVCHGLQSDYLVIKKNFMKVGIKYI-PYRTVDTVEL 118 Query: 130 ARRKHPSSRN----DLNSLCKRYGITISHRSKHGALLD 163 AR P+ ++ DL++ Y S H AL+D Sbjct: 119 ARILFPTQKSYRLVDLSNSLNLY----SGTGYHNALID 152 >gi|160689338|gb|ABX45527.1| polymerase C [Bacillus subtilis subsp. inaquosorum] gi|160689350|gb|ABX45533.1| polymerase C [Bacillus subtilis subsp. spizizenii] gi|160689352|gb|ABX45534.1| polymerase C [Bacillus subtilis subsp. spizizenii] gi|160689354|gb|ABX45535.1| polymerase C [Bacillus subtilis subsp. inaquosorum] gi|160689356|gb|ABX45536.1| polymerase C [Bacillus subtilis subsp. spizizenii] gi|160689358|gb|ABX45537.1| polymerase C [Bacillus subtilis subsp. spizizenii] gi|160689360|gb|ABX45538.1| polymerase C [Bacillus subtilis subsp. inaquosorum] gi|160689362|gb|ABX45539.1| polymerase C [Bacillus subtilis subsp. inaquosorum] gi|160689412|gb|ABX45564.1| polymerase C [Bacillus subtilis subsp. inaquosorum] gi|160689414|gb|ABX45565.1| polymerase C [Bacillus subtilis subsp. spizizenii] gi|293627263|gb|ADE58306.1| DNA polymerase III alpha subunit [Bacillus subtilis subsp. inaquosorum] Length = 259 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +++ + + +IDTL + R +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190 + D+ + + +KM+ ++ I + + NE+ Sbjct: 59 IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90 >gi|78485464|ref|YP_391389.1| DNA polymerase III subunit epsilon [Thiomicrospira crunogena XCL-2] gi|78363750|gb|ABB41715.1| Exonuclease [Thiomicrospira crunogena XCL-2] Length = 207 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 23/177 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + FD ETTGL+ + DRI+ + A+ E+L N TF S E++K+H Sbjct: 32 VCFDCETTGLNPRKDRIVSLSAIKIRGNEVLTSEALNLTFV-----QEAAISEESIKIHW 86 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I +E K S F F + + + +FDV +N +I K L + Sbjct: 87 IRNEDTKAGLSEQEGIEAFLHFIGSRPL--VGYYLEFDVAMVN----QIIKPWLGITLPN 140 Query: 125 DTLSIARRKH-------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++ R + P DL + + + +H A D+ + S +YIK+ Sbjct: 141 AQIEVSSRYYDYKEEIIPKKIIDLTFDAILKDLELPNLGQHDAFSDAFMTSLIYIKL 197 >gi|315605967|ref|ZP_07880998.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 180 str. F0310] gi|315312249|gb|EFU60335.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 180 str. F0310] Length = 250 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 19/177 (10%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQV--FLCPNGRKNSPEALKLHGI 65 FD ETTG+ DR++ V +D + + QV +L G + +A +HGI Sbjct: 11 FDTETTGVRPLKDRLVTAALVLRIDGASYRFGVSEPDQVATWLTDPGVEIPEQATAVHGI 70 Query: 66 TDEFLKDKP-SFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLD-- 119 T +D+ + E E + +A NA +D+ +N EL+R + Sbjct: 71 TTAQARDEGRPIEEVLHELAGSIVEHWLRGYPLVAFNASYDITLVNQELRRHRVGSFEER 130 Query: 120 ----PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 P ++D L + R+ + + L + YG +S + H A +D + DV Sbjct: 131 LEGAPMLVVDPLVLDRKLDRFRKGKKTLTEMAPVYGAAVSPDA-HTAEVDVAMTLDV 186 >gi|168702572|ref|ZP_02734849.1| exonuclease [Gemmata obscuriglobus UQM 2246] Length = 183 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 15/149 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL--KLHGITD 67 + D ET D D IG + ++ +K R V + R P + ++HGIT Sbjct: 19 VAIDFETA--DHGPDSACAIG-LARVENNKVVRREAVLI----RPPRPRVMFTEVHGITW 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQRINKD-PLDPSRIID 125 +++ F ++ + A+++A HNA FD ++A D P P + Sbjct: 72 PMVQNASPFGDVWRGLLPII--EGAKFLAAHNASFDRRVLHACCIAAGLDVPALP--FVC 127 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISH 154 T+ IARRK +L ++C+R GI + H Sbjct: 128 TVQIARRKWALKPANLPAVCRRLGIGLIH 156 >gi|241205541|ref|YP_002976637.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859431|gb|ACS57098.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 199 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 7/149 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 ++ I D ET + + +G + D + R + + P + S + +HGI Sbjct: 4 LKTIAIDFETA--NEQRGSACSVGLAWIED-GRVTRVEERLIRPREMRFSGMNIAIHGIR 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++D P F + EF + + A IAHNA FD A L + + + + Sbjct: 61 PEHVEDAPEFPEVMDEFHE--DISGATMIAHNAAFDFSVWRASLD-LYRQSYPELTYLCS 117 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISH 154 L +A+R P + LN + + G+ H Sbjct: 118 LKMAQRIWPHFLSHRLNLIAEHLGLRFVH 146 >gi|160931331|ref|ZP_02078731.1| hypothetical protein CLOLEP_00168 [Clostridium leptum DSM 753] gi|156869715|gb|EDO63087.1| hypothetical protein CLOLEP_00168 [Clostridium leptum DSM 753] Length = 172 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 8/100 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETT LD RIIEI ++D + + P G EA +H I+ + Sbjct: 17 VILDTETTDLDG---RIIEI---SIIDAATGTVLMDQLINPQGAPICAEARTVHHISPDD 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 L P+F+ + D ++ +A NA FD I AE Sbjct: 71 LATAPTFTQVRPRLEDVVADRVV--MAWNAPFDRERIEAE 108 >gi|170744636|ref|YP_001773291.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] gi|168198910|gb|ACA20857.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp. 4-46] Length = 296 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 12/99 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEAL-KLH 63 +V D ETTGLD D +IE+G V Y ++ R ++V L G K PEA+ +L Sbjct: 42 LVLDTETTGLDPACDEVIELGIVAFT-YGQSGRIYRVRHRFNQLHQPG-KPIPEAVTRLT 99 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 GITD + K I + IAHNA+FD Sbjct: 100 GITDADVAGK----RIDDAAVAALAAKARVVIAHNARFD 134 >gi|256381025|ref|YP_003104685.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] gi|255925328|gb|ACU40839.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM 43827] Length = 382 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 13/146 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+ETTG ++DR++E+ V+L + + L P GR P+ +H I Sbjct: 1 MGYAVVDVETTGF-RRSDRVVEVAVVQLDRDRRVTGEWCTLLNP-GRDLGPQ--HVHRIR 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + P+F+ +AHN FD F+ AE R+ D D Sbjct: 57 AADVWGAPTFALAAGAL--ARRLAGRVLVAHNLAFDARFLAAEFGRVGVD-------ADF 107 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITI 152 + + R L C G+ + Sbjct: 108 DGLCTMRLSGGRRSLRDCCADAGVPL 133 >gi|223986774|ref|ZP_03636758.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM 12042] gi|223961261|gb|EEF65789.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM 12042] Length = 187 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 16/106 (15%) Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI------AHNAKFDVGFINAEL 110 P + +HGIT + + D P F ++ EQ W+ AHNA FD+ + A Sbjct: 50 PSFIDIHGITPDQVADAPFFPKVY--------EQLKPWLDGGVLCAHNAGFDMKVL-ASC 100 Query: 111 QRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHR 155 + + L + T+ ++R+ +P ++ LN +C GI + H Sbjct: 101 CSLYRLELPDAPYFCTVKLSRKVYPYLKHHRLNDVCDYMGIQLDHH 146 >gi|218184498|gb|EEC66925.1| hypothetical protein OsI_33530 [Oryza sativa Indica Group] Length = 422 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 7/123 (5%) Query: 12 FDIETTGLDSKNDR--IIEIGAVELL--DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 FD+ET+ +R ++E G++ L + F + P+ EAL+ GIT Sbjct: 26 FDVETSMPWGPRERRTLLEFGSIFLCPRQLVEVAEPFITLVRPSDLGVVTEALERKGITR 85 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126 L+D P F + + + + W HN FD I I + P +P +IDT Sbjct: 86 GALEDAPPFCDVADNIHNVLHGRI--WAGHNIISFDSEIIREAFAEIGRSPPEPKGMIDT 143 Query: 127 LSI 129 L + Sbjct: 144 LPL 146 >gi|160689410|gb|ABX45563.1| polymerase C [Bacillus subtilis subsp. inaquosorum] Length = 259 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +++ + + +IDTL + R +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNVAYKKLLEVEKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190 + D+ + + +KM+ ++ I + + NE+ Sbjct: 59 IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90 >gi|212636083|ref|YP_002312608.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3] gi|212557567|gb|ACJ30021.1| Exonuclease [Shewanella piezotolerans WP3] Length = 238 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLD+ + II IG V L + F+ P K +++ +HGIT Sbjct: 49 VALDFETTGLDANENSIISIGLVPFTLRRIACRQAKHWFITPED-KLKEDSIIIHGITHS 107 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127 LK P I + D + + H + + F +A L+ IN+ + P ++DT+ Sbjct: 108 DLKGAPDLLRILEQLLDELAGKIV--VVHYRRIERDFFDAALRSLINEGIVFP--VVDTM 163 Query: 128 SI 129 I Sbjct: 164 QI 165 >gi|322382088|ref|ZP_08056018.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153960|gb|EFX46310.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 142 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 8/97 (8%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K + ++ D ETTG++ ++ I++I ++L D + + +CP EA +HGI Sbjct: 54 KSKYLILDTETTGIEYDSE-IVDIAIIDL-DKNLIFASLVKPICPIPE----EATMIHGI 107 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 T+E + D PS+ ++++ + + + +NA FD Sbjct: 108 TNEMVADAPSWLEVWAQVQKLLSGKTL--LIYNADFD 142 >gi|296110637|ref|YP_003621018.1| exonuclease [Leuconostoc kimchii IMSNU 11154] gi|295832168|gb|ADG40049.1| exonuclease [Leuconostoc kimchii IMSNU 11154] Length = 177 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 11/168 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + + I I V +++ F + P S +HG+ Sbjct: 1 MNFIAMDFETANHEKHSAVSIAIAVVR---HNQVVDKFYSLIKPETYF-SARNTAVHGLK 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125 + + P F ++ F E +AHNA FD + L + +P ++D Sbjct: 57 ESDVAQAPKFPEVWKIIAPLFKEDKL-VVAHNAAFDNSILKGTLAYYGIE--EPHYMLLD 113 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 T+ +R+ P +N LN++ + +GIT+ H H AL D+ +++ I Sbjct: 114 TVRTSRKLLPDFKNHKLNTVAENFGITLDHH--HNALDDAVAAANILI 159 >gi|320529722|ref|ZP_08030801.1| exonuclease [Selenomonas artemidis F0399] gi|320138083|gb|EFW29986.1| exonuclease [Selenomonas artemidis F0399] Length = 221 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 8/91 (8%) Query: 6 KMRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +M+ IV D+E + + N IIEIGAV L + FQ ++CP Sbjct: 2 RMKHIVVDLEMNPIGKEYKEIRRKLNGEIIEIGAVRLSEKFVQEDKFQCYVCPEYGLVKK 61 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFN 88 +L GIT E + + F+ F F D+ Sbjct: 62 HITELTGITQEKVSGQRVFAESFKNFVDWIG 92 >gi|297205524|ref|ZP_06922920.1| DNA polymerase III [Lactobacillus jensenii JV-V16] gi|297150102|gb|EFH30399.1| DNA polymerase III [Lactobacillus jensenii JV-V16] Length = 317 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 8/167 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF- 69 + DIETTGL DRI E+ +++ + Q+ P K KL+GI + Sbjct: 37 MLDIETTGLSLYRDRITELAGIKVRNGKVVAEYSQLVKYPKDNKVPRFITKLNGIDEALI 96 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L + +EF +F + +N FD+ FI ++ L + ID L Sbjct: 97 LANGMPVKEAITEFRNFIG--GDVIVGYNVNFDLNFIYDLWEKFQLKKL-SNNYIDVLHF 153 Query: 130 ARR-KHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVYIK 173 +R S N L +R GI+ S HR + LD+ + D+Y K Sbjct: 154 SRVFFKKESHNRLLDCIRRLGISESEAHRGLKDS-LDTKAVFDIYRK 199 >gi|209885528|ref|YP_002289385.1| exonuclease, RNase T and DNA polymerase III [Oligotropha carboxidovorans OM5] gi|209873724|gb|ACI93520.1| exonuclease, RNase T and DNA polymerase III [Oligotropha carboxidovorans OM5] Length = 184 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 10/118 (8%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M RK ++ + D+ET G ++ IGA ++ D +K F L P R P+AL Sbjct: 1 MTRKKEVF-VSVDVETAGPIPGEYSLLSIGACDVGDLTKV---FSCELKPINRNADPKAL 56 Query: 61 KLHGIT-DEFLKDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAKFDVGFINAELQR 112 ++ G++ D+ +D + F D+ N+++ ++ NA FD F+N R Sbjct: 57 EVSGLSLDKLSRDGLDPRAAMQAFADWLAGLAENDRSIVFVGLNAPFDWSFVNYYFHR 114 >gi|259156119|gb|ACV96067.1| exonuclease, RNase T and DNA polymerase III [Providencia alcalifaciens Ban1] Length = 301 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 9/103 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64 ++ D ETTGL + ++ IIE+G V++L R + L + K PE + +L G Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITD+ ++ + ++ + + + +AHNA+FD F Sbjct: 113 ITDDMVRGQHIDDALVAS----WLSDDPLVVAHNAQFDRPFFE 151 >gi|269123136|ref|YP_003305713.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus moniliformis DSM 12112] gi|268314462|gb|ACZ00836.1| Exonuclease RNase T and DNA polymerase III [Streptobacillus moniliformis DSM 12112] Length = 426 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 7/78 (8%) Query: 2 IRKNK--MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 IRKN + I+ D+ETTG+ KND I+++ ++++ N F ++ P + +A Sbjct: 33 IRKNICILNPIILDVETTGI-RKNDEILQLSIIDIM----GNVVFDKYMKPKYVNDWDDA 87 Query: 60 LKLHGITDEFLKDKPSFS 77 K+H I+ E +K+K S Sbjct: 88 FKIHNISHEMVKNKKYIS 105 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 KI+ D+ETTG+ +ND II++ +++ K + F + P EA K+H I E Sbjct: 250 KIILDLETTGI-RENDEIIQLSIIDI----KGEKLFNEYFKPINVTEWEEAYKIHNIGKE 304 Query: 69 FLKDKPS 75 L+DK + Sbjct: 305 MLEDKLT 311 >gi|192289550|ref|YP_001990155.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris TIE-1] gi|192283299|gb|ACE99679.1| Exonuclease RNase T and DNA polymerase III [Rhodopseudomonas palustris TIE-1] Length = 276 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 44/99 (44%), Gaps = 12/99 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR------TFQVFLCPNGRKNSPEALKLH 63 I+ DIETTGLD D IIE+G V+ DYS R TF F P+ E + Sbjct: 23 IMLDIETTGLDHSTDEIIELGMVK-FDYSAEGRILGVRGTFSAFNEPS-VPIPREITAIT 80 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 GITD + + F D IAHN+ FD Sbjct: 81 GITDGMVAGHGFDVHAVAAFVD----DAVIVIAHNSGFD 115 >gi|307700293|ref|ZP_07637333.1| exonuclease [Mobiluncus mulieris FB024-16] gi|307614504|gb|EFN93733.1| exonuclease [Mobiluncus mulieris FB024-16] Length = 141 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 8/129 (6%) Query: 7 MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLH 63 MR+ V D ET + + +G V K + ++ L P+ + +P + +H Sbjct: 1 MREFVAIDFETA--NEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E ++D P +S I + F ++ +AHN FD G++ ++L + P+R Sbjct: 59 GITSEDVQDAPQWSDIADQVMTFIGDRPI--VAHNMAFD-GYVLSDLASLYGTEEIPNRR 115 Query: 124 IDTLSIARR 132 T+ +AR+ Sbjct: 116 FCTVRLARK 124 >gi|188582299|ref|YP_001925744.1| DNA polymerase III subunit epsilon [Methylobacterium populi BJ001] gi|179345797|gb|ACB81209.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] Length = 298 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-----SPEALKLHG 64 ++ D+ETTGLD + D IIE+ A+ +Y F V G + +PE + G Sbjct: 45 LMVDVETTGLDPQRDEIIEL-AMTPFNYGLDGTVFSVGDSFQGLRQPSEPITPEITAITG 103 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 IT+E + + + ++ F + IAHNA FD F+ Sbjct: 104 ITNEMVAGQVIDPAEVAK----FAAPASLVIAHNAAFDRRFLE 142 >gi|291542505|emb|CBL15615.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Ruminococcus bromii L2-63] Length = 296 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 34/182 (18%) Query: 7 MRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEAL 60 M ++ D+E G SK + IIEIGAV+L D TF + + P G+K + Sbjct: 1 MSYVILDLEWNGSYSKVLHKFVNEIIEIGAVKLDDELNVCDTFTMLVAPKIGKKLCSKVK 60 Query: 61 KLHGITDEFLKDKP-SFSSIFSEFWDF--------FNEQNAEWIAHNAKFDVG-----FI 106 +L IT+E LKD+ SF S F DF +++ + + N + G F+ Sbjct: 61 QLTKITNEELKDEGVSFIRAISLFSDFLGDGVLMTWSDSDLHALIENYSYYTGRTRLPFL 120 Query: 107 N--AELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + LQ +D LD S + L + + G+ S +H AL D Sbjct: 121 SRYCNLQSYCEDCLD------------LHDSSCQLGLGACAEMAGVDFSEDDQHRALADV 168 Query: 165 HL 166 +L Sbjct: 169 YL 170 >gi|269977446|ref|ZP_06184418.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] gi|269934362|gb|EEZ90924.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] Length = 303 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 8/129 (6%) Query: 7 MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLH 63 MR+ V D ET + + +G V K + ++ L P+ + +P + +H Sbjct: 1 MREFVAIDFETA--NEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E ++D P +S I + F ++ +AHN FD G++ ++L + P+R Sbjct: 59 GITSEDVQDAPQWSDIADQVMTFIGDRPI--VAHNMAFD-GYVLSDLASLYGTEEIPNRR 115 Query: 124 IDTLSIARR 132 T+ +AR+ Sbjct: 116 FCTVRLARK 124 >gi|255013952|ref|ZP_05286078.1| hypothetical protein B2_08587 [Bacteroides sp. 2_1_7] Length = 192 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 21/184 (11%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65 M+ + FD+ETTG+ + + +I ++D T +F +CP+ + EAL++ + Sbjct: 1 MKLLFFDLETTGIKYWRNGVHQISGEIVID-GVTKESFNFNVCPHSQCEIEEEALRICNV 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA---------HNAKFDVGFINAELQRINKD 116 + E ++ P ++ +F + ++ ++ +NA FD F+ A + N D Sbjct: 60 SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQ-NGD 118 Query: 117 PLDPS---------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 S ++ T + R++H + ++ + GI I H A D L Sbjct: 119 HYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLT 178 Query: 168 SDVY 171 ++Y Sbjct: 179 KEIY 182 >gi|320161625|ref|YP_004174850.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1] gi|319995479|dbj|BAJ64250.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1] Length = 194 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 17/172 (9%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K I D ETTGL S D IIEI V ++ + P R P+A+ +HGI Sbjct: 22 KHNPIYLDTETTGL-SAQDEIIEISIVN----DNGEVVYESLVRPT-RPIPPDAIAVHGI 75 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++E ++ + ++ E + +N +FD+ + R+ D R D Sbjct: 76 SNEDVQKARPWHIVWQEVRPILLNAGVV-VIYNEEFDLRMMQQSHARLGLPWRDRFRTFD 134 Query: 126 TLSIARRKH----PSSR----NDLNSLCKRYGITI--SHRSKHGALLDSHLL 167 + + + P R + L++ K GIT+ +HR+ LL LL Sbjct: 135 LMKLYAEYYGEWDPKRRAYRYHSLDAAGKHCGITLPNAHRATADTLLTRALL 186 >gi|332076082|gb|EGI86548.1| exonuclease family protein [Streptococcus pneumoniae GA41301] Length = 140 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 27/134 (20%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV-----ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D+E T SK +II++G V E++D+ T+ N E L Sbjct: 7 RYVVVDLEATSTGSKA-KIIQVGIVVIEDGEIVDHYTTD------------VNPHEPLDA 53 Query: 63 H-----GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 H G+TD+ L P FS + + +D ++ ++AHN +FD + L + Sbjct: 54 HIKELTGLTDQRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYEL 111 Query: 118 LDPSRIIDTLSIAR 131 +P +DT+ +A+ Sbjct: 112 RNPR--VDTVELAQ 123 >gi|319653481|ref|ZP_08007580.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2] gi|317394680|gb|EFV75419.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2] Length = 202 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 73/185 (39%), Gaps = 48/185 (25%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIG---------AVELLDYSKTNRTFQVFLCPN 51 M K KM ++ D+ETTGL +D IIE+ E+LD + + + Sbjct: 1 MRNKEKM-GLLLDVETTGLGPNSDEIIELALKLFSYRADTGEILDIKDKAAFLREPISKS 59 Query: 52 GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + N A ++HGI E + K F I + + FF+ + AHNA FD F+ Sbjct: 60 AKNNYSRAFRVHGIPYEAVSGK-CFDDIKIKKY-FFHADSV--FAHNASFDRSFL----- 110 Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLC-------KRYGITISHRSKHGALLDS 164 R +P N+L C K YG T SK LL S Sbjct: 111 -------------------YRMYPEDINELKWYCTMRSVPWKEYGFT---DSKLLTLLQS 148 Query: 165 HLLSD 169 H +++ Sbjct: 149 HQIAE 153 >gi|306819092|ref|ZP_07452806.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35239] gi|304648068|gb|EFM45379.1| DNA-directed DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35239] Length = 305 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 8/129 (6%) Query: 7 MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLH 63 MR+ V D ET + + +G V K + ++ L P+ + +P + +H Sbjct: 3 MREFVAIDFETA--NEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E ++D P +S I + F ++ +AHN FD G++ ++L + P+R Sbjct: 61 GITSEDVQDAPQWSDIADQVMTFIGDRPI--VAHNMAFD-GYVLSDLASLYGTEEIPNRR 117 Query: 124 IDTLSIARR 132 T+ +AR+ Sbjct: 118 FCTVRLARK 126 >gi|167645985|ref|YP_001683648.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31] gi|167348415|gb|ABZ71150.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31] Length = 296 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 11/104 (10%) Query: 5 NKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-----RKNSPE 58 K+R +F D+ETTGLD++ D IIE+ + Y R ++V +G R S E Sbjct: 37 EKVRVGLFVDVETTGLDTRRDEIIELAMIP-FRYGLVGRIYEVMEPFHGYRQPARPISAE 95 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 L GI D ++ + SI E F A IAHNA FD Sbjct: 96 ITALTGIDDAMVEGQ----SIDPEAVAAFAAPAALVIAHNASFD 135 >gi|226942744|ref|YP_002797817.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ] gi|226717671|gb|ACO76842.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ] Length = 240 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 14/158 (8%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR--KNSPEALKL 62 + R +V D+ETTGL+ + D ++ IGAV L++ + + Q F C R K+ E++ + Sbjct: 40 HAQRFVVLDLETTGLNVERDVVLSIGAV-LIENDAIDLSRQ-FECTLRRRLKSVTESVLI 97 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDP 117 HGI L + + F ++ + ++A +A FD + L+ R+ Sbjct: 98 HGIAPSALAVGTAPAEALLRFMEYAG--DCVFLAFHAPFDQRMLGRALKDELGYRLRHPF 155 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR 155 LD + + L HP L+ + +G+ +S R Sbjct: 156 LDVADLAPMLFPEALVHPGG---LDQWIQYFGLDMSRR 190 >gi|15598428|ref|NP_251922.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1] gi|107102762|ref|ZP_01366680.1| hypothetical protein PaerPA_01003829 [Pseudomonas aeruginosa PACS2] gi|218890575|ref|YP_002439439.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58] gi|254236194|ref|ZP_04929517.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719] gi|254241920|ref|ZP_04935242.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192] gi|9949354|gb|AAG06620.1|AE004746_4 probable nuclease [Pseudomonas aeruginosa PAO1] gi|126168125|gb|EAZ53636.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719] gi|126195298|gb|EAZ59361.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192] gi|218770798|emb|CAW26563.1| probable nuclease [Pseudomonas aeruginosa LESB58] Length = 208 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 86/177 (48%), Gaps = 13/177 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD 67 I D+ETT LD + I+ IGAV L+ K ++++ P ++ E++++H + Sbjct: 33 ISLDLETTSLDPRRADILSIGAV-LVRRGKLVMGERLELYVEPPPSLDA-ESIRIHKLRR 90 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDT 126 L+ + + F ++ + + FDV +N L Q +++ +PS I + Sbjct: 91 ADLEGQLQLEQALRQVLAFIGDRPL--LGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISS 148 Query: 127 LSIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 L + R P + DL ++L + + +S R H AL D+ ++ ++++++ G + Sbjct: 149 LYHRKVSRHFPDAHIDLRFDTLARALDVPVSGR--HTALGDAQAVALMFMRLLKGPA 203 >gi|329955851|ref|ZP_08296654.1| exonuclease [Bacteroides clarus YIT 12056] gi|328525231|gb|EGF52281.1| exonuclease [Bacteroides clarus YIT 12056] Length = 256 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTG + +DRI+EI +++ Y N + EA +HGI DE Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKV--YPNGNEETKTMRINPEMHIPAEASAVHGIYDED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122 + D P+F + + + + + N+ +FD+ + E R + D +D SR Sbjct: 68 VADCPTFKEVARGIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRADVD-IDMSR 118 >gi|160689324|gb|ABX45520.1| polymerase C [Bacillus subtilis] gi|160689326|gb|ABX45521.1| polymerase C [Bacillus subtilis] gi|160689344|gb|ABX45530.1| polymerase C [Bacillus subtilis] gi|160689364|gb|ABX45540.1| polymerase C [Bacillus subtilis] gi|160689372|gb|ABX45544.1| polymerase C [Bacillus subtilis] gi|160689380|gb|ABX45548.1| polymerase C [Bacillus subtilis] gi|160689382|gb|ABX45549.1| polymerase C [Bacillus subtilis] gi|160689384|gb|ABX45550.1| polymerase C [Bacillus subtilis] gi|160689386|gb|ABX45551.1| polymerase C [Bacillus subtilis] gi|160689400|gb|ABX45558.1| polymerase C [Bacillus subtilis] gi|160689402|gb|ABX45559.1| polymerase C [Bacillus subtilis] gi|160689416|gb|ABX45566.1| polymerase C [Bacillus subtilis] gi|160689418|gb|ABX45567.1| polymerase C [Bacillus subtilis] gi|160689420|gb|ABX45568.1| polymerase C [Bacillus subtilis] gi|160689424|gb|ABX45570.1| polymerase C [Bacillus subtilis] gi|160689438|gb|ABX45577.1| polymerase C [Bacillus subtilis] gi|160689442|gb|ABX45579.1| polymerase C [Bacillus subtilis] gi|160689448|gb|ABX45582.1| polymerase C [Bacillus subtilis] gi|160689456|gb|ABX45586.1| polymerase C [Bacillus subtilis] gi|160689458|gb|ABX45587.1| polymerase C [Bacillus subtilis] Length = 259 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 102 DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGA 160 D+GF+N +++ + + +IDTL + R +P +N LN+LCK++ I ++ H A Sbjct: 1 DMGFLNVAYKKLLEVDKAKNPVIDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRA 58 Query: 161 LLDSHLLSDVYIKMMVGGSQ--INFGFKTNED 190 + D+ + + +KM+ ++ I + + NE+ Sbjct: 59 IYDTEATAYLLLKMLKDAAEKGIQYHDELNEN 90 >gi|118577408|ref|YP_899648.1| exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus DSM 2379] gi|118504913|gb|ABL01395.1| Exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus DSM 2379] Length = 304 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 19/125 (15%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSP 57 K + + D ETTG + +D IIE+G V + S+ T+ F P R P Sbjct: 42 KTRRVGLCIDTETTGFNFSDDVIIELGIVAFEYDAMTGEISRIVDTYSGFEDP-CRPLDP 100 Query: 58 EALKLHGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 E + GITD+ L D + I S Q + HN KFD F+ Sbjct: 101 EVTAVTGITDDMLAGQSLDDAAVGKIVS--------QASLCFCHNCKFDRSFLERRFPEF 152 Query: 114 NKDPL 118 K P Sbjct: 153 EKLPF 157 >gi|88797304|ref|ZP_01112894.1| putative DNA polymerase, exonuclease activity [Reinekea sp. MED297] gi|88780173|gb|EAR11358.1| putative DNA polymerase, exonuclease activity [Reinekea sp. MED297] Length = 192 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 17/179 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF--QVFLCPNGRKNS--PEALKLH 63 R +V D+E TGL+++ D II G V +++ + + + P S + +H Sbjct: 16 RVLVLDLEMTGLNAQEDSIISAGWV-VIEQGRIELSLAGHQYFQPTAMMASDVSASAHIH 74 Query: 64 GITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 ITD L + +P + D ++ W+ H+A D+ F+ QR+ D + PS Sbjct: 75 MITDHLLEQQGQPLGHWLQRLNGDLLADR---WVFHHAPIDMAFLKMFSQRL--DIVLPS 129 Query: 122 RIIDTLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+ + +K S S+ L+ R + +H AL D+ +++Y+ +M Sbjct: 130 VTIEDTVLLEQKRFSDLTLESQQQLSLTACRARHRLPAYRQHHALSDALATAELYLALM 188 >gi|255325307|ref|ZP_05366413.1| DNA polymerase III epsilon subunit [Corynebacterium tuberculostearicum SK141] gi|255297872|gb|EET77183.1| DNA polymerase III epsilon subunit [Corynebacterium tuberculostearicum SK141] Length = 443 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 6/103 (5%) Query: 12 FDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITD 67 D +++ ND I +IGAV + +T+ + P G ++ + + +HGIT Sbjct: 98 LDFTAVDVETANDNWGSICQIGAVRFREGQETDSRSWLCTPPPGIEHFADINVSIHGITA 157 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 + +K P+F + E +DF +AHNA+FD + + L Sbjct: 158 DDVKGAPAFVEVSKELFDFLGGDV--LVAHNAQFDSTALRSAL 198 >gi|317050855|ref|YP_004111971.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] gi|316945939|gb|ADU65415.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] Length = 250 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 7/127 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTG D K I+ IG V + L + + P + S +++ +HGIT Sbjct: 61 LALDFETTGFDPKRHGIVSIGLVPMSLQRIRCAEARHWIVKPRVQLES-QSIVVHGITHS 119 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127 + P + I E + + H+ + F++A L+ RI + P +IDT+ Sbjct: 120 DVATAPDLARILDELLEAMAGHV--MVVHHRGIERSFLDAALKARIGEGIQFP--VIDTM 175 Query: 128 SIARRKH 134 + R H Sbjct: 176 ELEARLH 182 >gi|49079546|gb|AAT49904.1| PA3232 [synthetic construct] Length = 209 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 86/177 (48%), Gaps = 13/177 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD 67 I D+ETT LD + I+ IGAV L+ K ++++ P ++ E++++H + Sbjct: 33 ISLDLETTSLDPRRADILSIGAV-LVRRGKLVMGERLELYVEPPPSLDA-ESIRIHKLRR 90 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDT 126 L+ + + F ++ + + FDV +N L Q +++ +PS I + Sbjct: 91 ADLEGQLQLEQALRQVLAFIGDRPL--LGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISS 148 Query: 127 LSIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 L + R P + DL ++L + + +S R H AL D+ ++ ++++++ G + Sbjct: 149 LYHRKVSRHFPDAHIDLRFDTLARALDVPVSGR--HTALGDAQAVALMFMRLLKGPA 203 >gi|325271479|ref|ZP_08137997.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51] gi|324103369|gb|EGC00698.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51] Length = 236 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 24/178 (13%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEAL 60 + R +V D+ET+GL+ D+++ IGAV + +D+++ RT Q P + N+ ++ Sbjct: 38 EQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLQR---PLLKTNA--SV 92 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD- 119 +HG+ L + + DF + +A +A FD L R K+ L Sbjct: 93 LIHGLGPSALAAGCEPAEALLDLLDFIGDSPV--LAFHAPFD----QRMLARALKESLGY 146 Query: 120 --PSRIIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S +D +A +P + L+ R+G+ + R H A D+ + +++ + Sbjct: 147 RLQSPFLDVAELAPMLNPDTVLREAGLDDWVARFGLQVEER--HHASADAQVTAELVL 202 >gi|227875810|ref|ZP_03993936.1| possible DNA-directed DNA polymerase III [Mobiluncus mulieris ATCC 35243] gi|227843558|gb|EEJ53741.1| possible DNA-directed DNA polymerase III [Mobiluncus mulieris ATCC 35243] Length = 143 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 8/129 (6%) Query: 7 MRKIV-FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLH 63 MR+ V D ET + + +G V K + ++ L P+ + +P + +H Sbjct: 3 MREFVAIDFETA--NEQRRSACAVGLVSFDGEGKLSDSYYKLLRPHPEVDYFNPANVWVH 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E ++D P +S I + F ++ +AHN FD G++ ++L + P+R Sbjct: 61 GITSEDVQDAPQWSDIADQVMTFIGDRPI--VAHNMAFD-GYVLSDLASLYGTEEIPNRR 117 Query: 124 IDTLSIARR 132 T+ +AR+ Sbjct: 118 FCTVRLARK 126 >gi|330897776|gb|EGH29195.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. japonica str. M301072PT] Length = 50 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFL 48 R IV D ETTG+ + RI+EIG VEL+ T R F V+L Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYL 50 >gi|255658382|ref|ZP_05403791.1| putative DNA polymerase III subunit epsilon [Mitsuokella multacida DSM 20544] gi|260849714|gb|EEX69721.1| putative DNA polymerase III subunit epsilon [Mitsuokella multacida DSM 20544] Length = 241 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 11/175 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+E G + D IIEIGA+ L + F+ + P N + G+T E Sbjct: 42 VSFDLEMAG--AFPDDIIEIGAIRLPLGNDKIEVFRRLIRPRTFINR-TVRDMTGLTKED 98 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLD---PSRIID 125 L+DK + I EF DF + ++ D+ IN L R+N K+ + R +D Sbjct: 99 LRDKSTLDVILPEFLDFVDPEDLVVGHAIGDNDLLSINLALIRMNHKNGTNIRFCPRYLD 158 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 T+ +A++ P + +L +L + +G + KH A D+ L S V ++ ++ S Sbjct: 159 TVRLAQQLLPKRKKYNLIALLESFG--WHSKKKHRAFEDA-LASYVLLECLLEDS 210 >gi|254293981|ref|YP_003060004.1| exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC 49814] gi|254042512|gb|ACT59307.1| Exonuclease RNase T and DNA polymerase III [Hirschia baltica ATCC 49814] Length = 298 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 49/107 (45%), Gaps = 18/107 (16%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR--TFQVFLCPNGRKNSP---EALKL 62 R ++ D ETTGLD + +IEI V +YS + TF L + SP E KL Sbjct: 41 RGLLIDTETTGLDYREAELIEIALVP-FEYSTEGKLVTFGKALDQFQQPKSPISEEITKL 99 Query: 63 HGITDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 GIT+E + D P+ + E D IAHNA FD F Sbjct: 100 TGITNEMVAGQKIDIPAVEQLIKES-DLI-------IAHNAAFDRPF 138 >gi|292670219|ref|ZP_06603645.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648171|gb|EFF66143.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 179 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 18/173 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS-PEALKLHGITDE 68 +VFD ETTG S +D ++ + V+ + + + RKN+ P+A K++ I+ Sbjct: 6 LVFDTETTGFRS-DDEVLTLAVVDGAGATVVDGMYAPV-----RKNAWPDAEKINRISPA 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P + +E FN+ + +N +FD+ + RI +P+R L+ Sbjct: 60 MVVNCPPILAQQAELERMFNDPETLLVGYNIEFDIRLLAQSGIRIQ----NPNRHDVMLA 115 Query: 129 IAR-RKHPSSRND------LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + RK P +R L Y HGAL D+ Y KM Sbjct: 116 FSEFRKVPDARRGGYRWWKLAECADYYRYDWGTTKAHGALADTLATLFCYQKM 168 >gi|317495208|ref|ZP_07953578.1| exonuclease [Gemella moribillum M424] gi|316914630|gb|EFV36106.1| exonuclease [Gemella moribillum M424] Length = 623 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 16/149 (10%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT+E L+DKPSF + +++ ++ + H + D + Q I + PS Sbjct: 59 LTGITNEILRDKPSFRKVSKVLYEYI--KDGILVCHGLQSDYLILKKHFQDIGIE-YSPS 115 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD----SHLLSDVYIKMMV 176 +DT+ +AR P+ S L+ L I S + H A++D + LL + +K+ + Sbjct: 116 MSLDTVELARLFLPTQSSYRLSDLAASLNIY-SSDNYHNAVIDVKATAKLLETIALKIPL 174 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISL 205 K N ++ K KK NI+L Sbjct: 175 IQ-------KENYNKICKLLKKVDSNIAL 196 >gi|313108556|ref|ZP_07794557.1| putative nuclease [Pseudomonas aeruginosa 39016] gi|310881059|gb|EFQ39653.1| putative nuclease [Pseudomonas aeruginosa 39016] Length = 208 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 40/177 (22%), Positives = 87/177 (49%), Gaps = 13/177 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD 67 I D+ETT LD + I+ IGAV L+ K ++++ P ++ E++++H + Sbjct: 33 ISLDLETTSLDPRRADILSIGAV-LVRRGKLVMGERLELYVEPPPSLDA-ESIRIHKLRR 90 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDT 126 L+ + + F ++ + + FDV +N L+++ ++ +PS I + Sbjct: 91 ADLEGQLQLEQALRQLLAFIGDRPL--LGYYLSFDVAVLNRHLRQLFDRQLHNPSIEISS 148 Query: 127 LSIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 L + R P + DL ++L + + +S R H AL D+ ++ ++++++ G + Sbjct: 149 LYHRKVSRHFPDAHIDLRFDTLARALDVPVSGR--HTALGDAQAVALMFMRLLKGPA 203 >gi|227832010|ref|YP_002833717.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] gi|262184134|ref|ZP_06043555.1| DNA polymerase III subunit epsilon [Corynebacterium aurimucosum ATCC 700975] gi|227453026|gb|ACP31779.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] Length = 516 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 31/149 (20%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + I+TTG+ R++ + A+ L + + F + P P LHG++ E Sbjct: 75 VALTIQTTGIHPSTGRLLTVDALTLNAEGEIGQEFHAVINPG---EDPGPKHLHGLSAEE 131 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ------------------ 111 ++ SFS + + + I H+A + GFI +E + Sbjct: 132 VQAGQSFSMLLKPLDRLIDGRT--LIVHDAPYTWGFIVSEARRAMTAAARQNRARNRNRG 189 Query: 112 -------RINKDPLDPSRIIDTLSIARRK 133 ++ P P I+DTL+ ARR+ Sbjct: 190 KGRRRRFKVGHVPT-PVAIVDTLATARRQ 217 >gi|213162305|ref|ZP_03348015.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 83 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 8/84 (9%) Query: 158 HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRI 216 HGALLD+ +L++VY+ M G + + F + R ++ + T+ I R + +F Sbjct: 2 HGALLDAQILAEVYLAMTGGQTSMTFAMEGETQR--QQGEATIQRIVRQASRLRVVFA-- 57 Query: 217 TKEELDEHDK---TIQTLGKNAIW 237 ++EEL H+ +Q G + +W Sbjct: 58 SEEELAAHESRLDLVQKKGGSCLW 81 >gi|329945803|ref|ZP_08293490.1| exonuclease [Actinomyces sp. oral taxon 170 str. F0386] gi|328528251|gb|EGF55229.1| exonuclease [Actinomyces sp. oral taxon 170 str. F0386] Length = 258 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 47/213 (22%), Positives = 76/213 (35%), Gaps = 37/213 (17%) Query: 12 FDIETTGLDSKNDRIIEIGAV---ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 FD ETTG+D DR++ V E ++ +L G + A +HG+T E Sbjct: 26 FDTETTGVDPGRDRLVTAALVWRAERRADGVRQQSVTTWLADPGVEIPEAASAVHGVTTE 85 Query: 69 FLKDKP-SFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRIN---------- 114 + + + + +E D I NA +D+ + EL R Sbjct: 86 RSRSEGRPVAEVLAEVSDHLVAAMTAGTPVIVFNASYDLTLMETELARHGLPTMRSRLGR 145 Query: 115 -----KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DPL R +D +R+ L LC+ YG+ + H A +D D Sbjct: 146 ELGPIADPLVLDRAVDRYRRGKRR-------LGDLCEVYGVHVDE-DLHTAEVDVAATLD 197 Query: 170 VYIKMMVGGSQIN-------FGFKTNEDRFFKE 195 + + QI+ F+ R + E Sbjct: 198 ILEALATAHPQISELGPDELVAFQAQAHRTWAE 230 >gi|187932792|ref|YP_001886212.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str. Eklund 17B] gi|187720945|gb|ACD22166.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str. Eklund 17B] Length = 309 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 12/170 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIIEEVHHL-IKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125 ++D+ F ++ + +FN+ IAHNA FD+ + L+ N + PS + I Sbjct: 58 PRMVQDELEFDKVWEKIKHYFNKNLV--IAHNASFDISVLRNTLELYNLEM--PSFQYIC 113 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ ++R + + N LN++ G H H AL D+ S++ + + Sbjct: 114 TMKLSRNFYSNLDNARLNTVNNFLGYEFKH---HDALADAMACSNILLNI 160 >gi|32491084|ref|NP_871338.1| ribonuclease T [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173142|sp|Q8D2L9|RNT_WIGBR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|25166291|dbj|BAC24481.1| rnt [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 215 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 24/192 (12%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRT-----FQVFLCPNGRK 54 KN+ R +V D+ET G D D ++EI + L +D + R F + P G Sbjct: 12 KNRFRGFYPVVIDVETAGFDPYRDALLEIAIITLRMDDNGFLRIDNKLHFNIIPTP-GLN 70 Query: 55 NSPEALKLHGITDEF------LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGF 105 ALK + I D + + ++ + IF+ +Q+ A +AHNA FD F Sbjct: 71 IKKSALKFNKI-DPYNPFRAAINERKAIKEIFNTVRLGIKKQSCSKAVVVAHNAYFDHSF 129 Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + + + R I +P DT +++ + L+ C GI ++ H AL D Sbjct: 130 LMSAVDRSKIKYNPFHSFSTFDTATLSGLV--LGQTVLSKACIIAGIEFNNNYAHSALYD 187 Query: 164 SHLLSDVYIKMM 175 S ++++ +++ Sbjct: 188 SKKTAELFCEIV 199 >gi|313895399|ref|ZP_07828956.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430] gi|312976294|gb|EFR41752.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430] Length = 219 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 8/90 (8%) Query: 7 MRKIVFDIETTGLDSK--------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M+ IV D+E + + N IIEIGAV L + FQ ++CP Sbjct: 1 MKHIVVDLEMNPIGKEYKEIRRKLNGEIIEIGAVRLSEKFVQEDKFQCYVCPEYGLVKKH 60 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFN 88 +L GIT E + + F+ F F D+ Sbjct: 61 ITELTGITQEQVSGQRVFAESFKNFVDWIG 90 >gi|269120725|ref|YP_003308902.1| exonuclease RNase T and DNA polymerase III [Sebaldella termitidis ATCC 33386] gi|268614603|gb|ACZ08971.1| Exonuclease RNase T and DNA polymerase III [Sebaldella termitidis ATCC 33386] Length = 195 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 17/178 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + FD+ET G ++ I A+ E+ + K + + G + A+ ++ Sbjct: 6 VFFDVETNG--KVGSSVLSISAIKVNFNGEIQKWEKVGEYDRFYFRNPGEAINMGAINVN 63 Query: 64 GITDEFLKDK-------PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 G+TD+ L+ K F F+ F + A ++AHN KFD FI L+ Sbjct: 64 GLTDDVLEKKREGTIYPVHFKDDIESFYSF-CQDTAHYVAHNIKFDRSFIPFMLKNQFDT 122 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L+ I+ I LN + Y I S H +L D + V+ KM Sbjct: 123 MLENVEIVKA-GINEYYGTYKWPKLNECARFYNIPFDDSSLHESLYDVLITFRVFYKM 179 >gi|262275580|ref|ZP_06053389.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] gi|262219388|gb|EEY70704.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] Length = 239 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 17/155 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ET+GLD + D+++ +G VE+ + + L N E+ ++H + E Sbjct: 54 LVLDFETSGLDPEQDKVLSMGWVEIRQSQIRLSSARHILVNQPVLNGYESARIHHLRPET 113 Query: 70 LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNA----KFDVGFINAELQRINKDPLDPSRII 124 L++ S FS+ +D + +AH + +F ++ +IN P + Sbjct: 114 LRNCGVSEHHAFSQLFDVMKGKVI--VAHGSVIEKRFLARYLTLHYGQINL----PLVWL 167 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 DTL I + R L +C+ + ++ S R+ HG Sbjct: 168 DTLKIEQ-----YREQLRQVCRDWRLS-SVRAAHG 196 >gi|254447860|ref|ZP_05061325.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium HTCC5015] gi|198262640|gb|EDY86920.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium HTCC5015] Length = 238 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIETTGL+++ D+I+ IG VE D S+ N + S ++ +HGIT Sbjct: 51 LAIDIETTGLNAERDKIVSIGLVE-FDASRVYLASAKHWLVNPGELSDSSVIVHGITHSD 109 Query: 70 LKDKPSFSSIFSEF 83 + P+ ++ E Sbjct: 110 VSRAPTIDAVIPEL 123 >gi|118602011|ref|YP_908711.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida] gi|118614749|ref|YP_908532.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida] gi|134044854|ref|YP_001102265.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275] gi|134047136|ref|YP_001102053.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|165937990|ref|ZP_02226550.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275] gi|229516080|ref|ZP_04405530.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9] gi|237810081|ref|YP_002894521.1| exonuclease family protein [Escherichia coli] gi|237810261|ref|YP_002894700.1| exonuclease family protein [Salmonella enterica] gi|300927181|ref|ZP_07142918.1| exonuclease [Escherichia coli MS 182-1] gi|309796486|ref|ZP_07690894.1| exonuclease [Escherichia coli MS 145-7] gi|118596840|dbj|BAF38144.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida] gi|118597020|dbj|BAF38323.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida] gi|133905055|gb|ABO41070.1| putative exonuclease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|133905388|gb|ABO42150.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275] gi|165914013|gb|EDR32630.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275] gi|229346860|gb|EEO11828.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9] gi|229561745|gb|ACQ77947.1| exonuclease family protein [Salmonella enterica] gi|229561937|gb|ACQ78138.1| exonuclease family protein [Escherichia coli] gi|300416848|gb|EFK00159.1| exonuclease [Escherichia coli MS 182-1] gi|308119991|gb|EFO57253.1| exonuclease [Escherichia coli MS 145-7] gi|324008196|gb|EGB77415.1| exonuclease [Escherichia coli MS 57-2] gi|327536618|gb|AEA95451.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Dublin] Length = 289 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 14/99 (14%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63 + +V D ETTGL + D++IE+ ++ V LC R P+A+ +H Sbjct: 104 LEPLVLDTETTGLGER-DQVIELAVTDIRGA--------VLLCTRLRPTVEIDPQAMGVH 154 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 GIT+ L ++P+++ + + ++ + N+ FD Sbjct: 155 GITETELSNEPTWTQVAPALARLLSGRHL--VIFNSSFD 191 >gi|70732988|ref|YP_262761.1| exonuclease [Pseudomonas fluorescens Pf-5] gi|68347287|gb|AAY94893.1| exonuclease [Pseudomonas fluorescens Pf-5] Length = 235 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +V D+ETTGL+ D+++ IGAV + D + ++ F+ L G K SP L +HG Sbjct: 38 EQRWVVVDVETTGLNLNRDQVLSIGAVVIEDGAIDFSQQFERTLQRQGHKLSPSVL-IHG 96 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 + + +F +F ++ +A +A FD Sbjct: 97 LGPSAIAAGCDPVEALLDFMEFVG--DSPLLAFHAPFD 132 >gi|329961134|ref|ZP_08299389.1| exonuclease [Bacteroides fluxus YIT 12057] gi|328532072|gb|EGF58882.1| exonuclease [Bacteroides fluxus YIT 12057] Length = 256 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 14/118 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + FD+ETTG + +DRI+EI +++ + SKT R P E+ +HGI Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTMRINPEMHIP------AESSAVHGI 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122 DE + D P+F + + + + + + N+ +FD+ + E R D +D SR Sbjct: 64 YDEDIADCPTFKEVARKIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVD-IDMSR 118 >gi|209693722|ref|YP_002261650.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238] gi|208007673|emb|CAQ77784.1| putative exonuclease [Aliivibrio salmonicida LFI1238] Length = 238 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 11/187 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD+ + II IG V R Q + ++ +HGIT Sbjct: 49 VALDFETTGLDANQNSIISIGLVPFTLERIRCRESQHWFVKAQDSLEENSVVIHGITHSD 108 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 L+ P I + D + + H K + F + L+ I + + P I+DT+ Sbjct: 109 LQGAPDLRRILEKVLDALAGKVV--VVHYRKIERDFFDINLRNLIGEGIVFP--IVDTMQ 164 Query: 129 I-ARRKHPSSRNDLNSLCKRYGITI---SHRSKHG--ALLDSHLLSDVYIKMMVGGSQIN 182 I + ++ +N + + +I + RS++G A H L+D + +QI Sbjct: 165 IEGDFQQEQAKGLINWIKGKRPESIRLANSRSRYGLPAYAPHHALTDAIATAELFQAQIR 224 Query: 183 FGFKTNE 189 + F N+ Sbjct: 225 YHFSEND 231 >gi|325956410|ref|YP_004291822.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC] gi|325332975|gb|ADZ06883.1| DNA polymerase III alpha chain [Lactobacillus acidophilus 30SC] gi|327183226|gb|AEA31673.1| DNA polymerase III subunit alpha [Lactobacillus amylovorus GRL 1118] Length = 177 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++H IT E +K+ P+ + ++ + + + AHNA+FD + L R N + Sbjct: 50 IQVHQITAEDVKNAPTMAEVWPKIKGLY-QPGMLVAAHNARFDTNVMRQSLARYNIS--E 106 Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +IDTL+ +++ P N L+++ + + H H AL DS + + I Sbjct: 107 PHYLVIDTLATSKKFEPELPNHKLDTVSDALDVELWHH--HNALSDSEACAGILI 159 >gi|300727261|ref|ZP_07060677.1| exonuclease [Prevotella bryantii B14] gi|299775499|gb|EFI72093.1| exonuclease [Prevotella bryantii B14] Length = 163 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 6/105 (5%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HG+ E D P F ++++ +N +AHN FD G + A + D D Sbjct: 53 QVHGLCHEDTDDAPVFPKVWAQIEPLI--ENLPLVAHNKPFDEGCLKAVFRVYQMDYPD- 109 Query: 121 SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 DTL ++RR P N L ++ G + H AL D+ Sbjct: 110 YEFYDTLCVSRRVLPDLENHQLQTVAAACGYCL--EDHHHALADA 152 >gi|172051553|emb|CAQ34948.1| hypothetical protein [Photobacterium damselae subsp. piscicida] Length = 302 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 9/103 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF----LCPNGRKNSPEAL-KLHG 64 ++ D ETTGL + ++ IIE+G V++L R + L + K PE + +L G Sbjct: 53 VLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTG 112 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITD+ ++ + + W + +AHNA+FD F Sbjct: 113 ITDDMVQGQ-HIDDLLVASW---LSDDPLVVAHNAQFDRPFFE 151 >gi|237640346|ref|YP_002891201.1| exonuclease family protein [Escherichia coli] gi|229561565|gb|ACQ77768.1| exonuclease family protein [Escherichia coli] Length = 289 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 12/76 (15%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63 + +V D ETTGL + D++IE+ ++ V LC R P+A+ +H Sbjct: 104 LEPLVLDTETTGLGER-DQVIELAVTDIRGA--------VLLCTRLRPTVEIDPQAMGVH 154 Query: 64 GITDEFLKDKPSFSSI 79 GIT+ L ++P+++ + Sbjct: 155 GITETELSNEPTWTQV 170 >gi|167461432|ref|ZP_02326521.1| hypothetical protein Plarl_02538 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 119 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 8/97 (8%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K + ++ D ETTG++ ++ I++I ++L D + + +CP EA +HGI Sbjct: 31 KSKYLILDTETTGIEYDSE-IVDIAIIDL-DKNLIFASLVKPICPIPE----EATMIHGI 84 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 T+E + D PS+ ++++ + + + +NA FD Sbjct: 85 TNEMVADAPSWLEVWAQVQKLLSGKTL--LIYNADFD 119 >gi|170017004|ref|YP_001727923.1| Rad3-related DNA helicase [Leuconostoc citreum KM20] gi|169803861|gb|ACA82479.1| Rad3-related DNA helicase [Leuconostoc citreum KM20] Length = 801 Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 15/177 (8%) Query: 10 IVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRT---FQVFLCPNGRKNSPEALKLHGI 65 +V D+ETTG +K RII+IG + + K R F+ F+ P + +L I Sbjct: 8 VVVDLETTGQSVAKGGRIIQIG----MTFIKNRRIIDHFESFVNP-AQPIDRNIQQLTHI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +K+ P F I + + IAHN FD ++N E R L + ID Sbjct: 63 SQKEVKNAPYFEEIAPVIQNLLTDTVI--IAHNVNFDYPYLNDEFARTGFPELT-NAAID 119 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 T+ +A+ P++ L L IT++ + H A D+H + +++ + Q+ Sbjct: 120 TVQLAQILLPTAPGYRLLDLTTYLNITLN--NAHRANADAHATALLFLSLWQRAEQL 174 >gi|92113107|ref|YP_573035.1| DNA polymerase III subunit epsilon [Chromohalobacter salexigens DSM 3043] gi|91796197|gb|ABE58336.1| Exonuclease [Chromohalobacter salexigens DSM 3043] Length = 241 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 23/171 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV--ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D+ETTGLD + I+ IG V +L R + + P R S ++ H IT Sbjct: 52 MAMDMETTGLDEQRHAIVSIGLVPFDLRRIRMAQRRYWIVRPP--RPLSERSITFHHITH 109 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P I E + + H + F+NA ++ + + +IDT+ Sbjct: 110 TEIEQAPDLDEILDELLEAMAGHVM--VVHYRHIERTFLNAAVKARRGEGIH-FPVIDTM 166 Query: 128 SIARRKH--------------PSSRNDLNSLCKRYGITISHRSKHGALLDS 164 S+ R H P + L RYG+ H AL+D+ Sbjct: 167 SLEARLHRQPLWARFRRWMGRPPASIRLPDSRTRYGLPPY--QAHHALIDA 215 >gi|300836940|ref|YP_003754017.1| putative exonuclease Ycg4D [Klebsiella pneumoniae] gi|242205350|gb|ACS75438.1| putative exonuclease Ycg4D [Klebsiella pneumoniae] Length = 233 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 12/76 (15%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63 + +V D ETTGL + D++IE+ ++ V LC R P+A+ +H Sbjct: 104 LEPLVLDTETTGLGER-DQVIELAVTDIRG--------AVLLCTRLRPTVEIDPQAMGVH 154 Query: 64 GITDEFLKDKPSFSSI 79 GIT+ L ++P+++ + Sbjct: 155 GITETELSNEPTWTQV 170 >gi|153819833|ref|ZP_01972500.1| ribonuclease T [Vibrio cholerae NCTC 8457] gi|126509614|gb|EAZ72208.1| ribonuclease T [Vibrio cholerae NCTC 8457] Length = 151 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 13/128 (10%) Query: 59 ALKLHGITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAE 109 AL+ GI D F L+ S E + EQ A +AHNA FD F+ A Sbjct: 1 ALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAA 60 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + + P P DT +++ + L CK G+ +R H AL D+ Sbjct: 61 SERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKT 118 Query: 168 SDVYIKMM 175 ++++ ++ Sbjct: 119 AELFCTIV 126 >gi|121587354|ref|ZP_01677125.1| ribonuclease T [Vibrio cholerae 2740-80] gi|121548437|gb|EAX58497.1| ribonuclease T [Vibrio cholerae 2740-80] Length = 190 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 13/128 (10%) Query: 59 ALKLHGITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAE 109 AL+ GI D F L+ S E + EQ A +AHNA FD F+ A Sbjct: 40 ALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAA 99 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + + P P DT +++ + L CK G+ +R H AL D+ Sbjct: 100 SERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKT 157 Query: 168 SDVYIKMM 175 ++++ ++ Sbjct: 158 AELFCTIV 165 >gi|262382001|ref|ZP_06075139.1| exonuclease [Bacteroides sp. 2_1_33B] gi|262297178|gb|EEY85108.1| exonuclease [Bacteroides sp. 2_1_33B] Length = 192 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 21/184 (11%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65 M+ + FD+ETTG+ + + +I ++D T +F +CP+ + EAL++ + Sbjct: 1 MKLLFFDLETTGIKYWRNGVHQISGEIVID-GVTKESFNFNVCPHPQCEIEEEALRICNV 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA---------HNAKFDVGFINAELQRINKD 116 + E ++ P ++ +F + ++ ++ +NA FD F+ A + N D Sbjct: 60 SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQ-NGD 118 Query: 117 PLDPS---------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 S ++ T + R++H + ++ + GI I H A D L Sbjct: 119 HYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLT 178 Query: 168 SDVY 171 ++Y Sbjct: 179 KEIY 182 >gi|261749200|ref|YP_003256885.1| DNA polymerase III epsilon chain [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497292|gb|ACX83742.1| putative DNA polymerase III epsilon chain [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 255 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 8/159 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FDIE TG++ DRIIEI +++ + N+ + +L P++ +HGI DE + Sbjct: 12 FDIEATGVNIGKDRIIEISILKI--FPNGNQEDKTWLIFPEIPIPPKSTAIHGIKDEDVA 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQR--INKDPLDPSRIIDTLS 128 + F + + +NA+ +N+ +FD+ + E+ R I+ D + + ID Sbjct: 70 GQLPFKDVAIHIFRMI--ENADLAGYNSNRFDIPILVEEMLRAGISFD-IKKHKTIDVQV 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 I + P + + + + +H SK +L Sbjct: 127 IFHKMEPRTLSAAYKYYCKKNLIKAHSSKADTFATYEIL 165 >gi|164688494|ref|ZP_02212522.1| hypothetical protein CLOBAR_02139 [Clostridium bartlettii DSM 16795] gi|164602907|gb|EDQ96372.1| hypothetical protein CLOBAR_02139 [Clostridium bartlettii DSM 16795] Length = 252 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 12/98 (12%) Query: 7 MRKIVFDIE-TTGLDSKNDR----------IIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M I+FD+E G D N++ II+IGA++L TF ++ K+ Sbjct: 1 MNYIIFDLEFNQGFDRLNNKTVSNAKCPFEIIQIGAIKLDSELNILDTFSSYIKSEIYKD 60 Query: 56 -SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA 92 P K+ GIT+ LK+ PSF ++ +F F +N+ Sbjct: 61 IHPFVKKMTGITNSNLKNAPSFKEVYEDFLKFIGIKNS 98 >gi|123442599|ref|YP_001006576.1| exodeoxyribonuclease X [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089560|emb|CAL12409.1| exodeoxyribonuclease [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 221 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 23/167 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETT + ++EI +V+++D K F+ P S EA+ +H IT+ + Sbjct: 5 VIDTETTSFEGS---VLEIASVDIVD-GKICNPMSDFVKPT-EAISFEAMAIHHITENMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D P + ++ D ++AHNA FD K P + + TL ++ Sbjct: 60 ADAPLIEHVIDKYLD-----ADIYVAHNAAFDR----------EKLPQITAPWVCTLKLS 104 Query: 131 RRKHPSSRNDLNSLCKRYGI---TISHRSKHGALLDSHLLSDVYIKM 174 R+ P + L +G+ H AL D ++ +++ + M Sbjct: 105 RKLWPEGGHGNQYLRYAHGLNPDVPEGLHAHRALYDCYVTAELLLHM 151 >gi|153005992|ref|YP_001380317.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] gi|152029565|gb|ABS27333.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp. Fw109-5] Length = 213 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 19/190 (10%) Query: 11 VFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDE 68 D+ET GLD+K D ++ IG V + + ++ + P+ G + + ++ H + Sbjct: 31 AIDVETGGLDAKRDPLLAIGMVPVRAGRIRLGECYRTLVRPHAGTRITSASVTAHQLVSN 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127 + P + E E + H+A DV F+ + R P P ++DT Sbjct: 91 DFEAAPPLGDVLPEVERRARE--GALLFHHAAIDVAFLRRDFARTGLTWPSCP--VVDTA 146 Query: 128 SI----ARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + A+ + P+ D LN R + + H AL D+ +++++ + + Sbjct: 147 RLLVRHAQLRDPTRPRDHIALNLSVARAELGLPEYQAHDALSDAIATAELFLAL-----R 201 Query: 181 INFGFKTNED 190 + G +T D Sbjct: 202 MALGARTLRD 211 >gi|317485586|ref|ZP_07944462.1| exonuclease [Bilophila wadsworthia 3_1_6] gi|316923123|gb|EFV44333.1| exonuclease [Bilophila wadsworthia 3_1_6] Length = 169 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT + ++ P+F + + F + +AHNA FD + A Q N L Sbjct: 54 VHGITWKDVQGSPTFLEFWPQMASFL-QGVTHLVAHNAPFDRRVLEACCQS-NGIALPDL 111 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154 + TL +RRK + L+++C+ GI + H Sbjct: 112 PFVCTLRESRRKLKLPSHKLDAVCRCCGIPLDH 144 >gi|188588313|ref|YP_001920971.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str. Alaska E43] gi|188498594|gb|ACD51730.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str. Alaska E43] Length = 309 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 12/170 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D K + P + P + +HGI Sbjct: 1 MNFVAIDFETA--NEKRNSPCSIGIVVVKD-GKIIEEVHHLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125 ++D+ F ++ + +FNE IAHNA FD+ + L+ N + PS + I Sbjct: 58 PRMVQDELEFDKVWEKIKHYFNENLV--IAHNASFDISVLRNTLELYNIEM--PSFQYIC 113 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ +++ + + N LN++ G H H AL D+ ++ + + Sbjct: 114 TMKLSKNFYSNLDNARLNTVNNFLGYEFKH---HDALADAMACGNILLNI 160 >gi|183179408|ref|ZP_02957619.1| ribonuclease T [Vibrio cholerae MZO-3] gi|183012819|gb|EDT88119.1| ribonuclease T [Vibrio cholerae MZO-3] Length = 191 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 13/128 (10%) Query: 59 ALKLHGITDEF--LKDKPSFSSIFSEFWDFF-NEQNAE------WIAHNAKFDVGFINAE 109 AL+ GI D F L+ S E + EQ A +AHNA FD F+ A Sbjct: 41 ALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAA 100 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + + P P DT +++ + L CK G+ +R H AL D+ Sbjct: 101 SERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKT 158 Query: 168 SDVYIKMM 175 ++++ ++ Sbjct: 159 AELFCTIV 166 >gi|323493392|ref|ZP_08098514.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] gi|323312215|gb|EGA65357.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] Length = 239 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 32/183 (17%) Query: 4 KNKMRKIVF---DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEA 59 K + +++F D ETTGL S +D II IG V L+ N+ + P ++ + ++ Sbjct: 41 KTPLEEVMFLAMDFETTGLSSDDDDIITIGTVPFNLNRIYINQAQHWTVKPR-KQLAEDS 99 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFIN-AELQRINKD 116 + +HGIT + D P S I+ + EQ A + H + + F + A + RI + Sbjct: 100 VVIHGITHSDVLDAPDLSGIYQQVL----EQMAGKIMVVHYQRIEREFFDKALMARIKEG 155 Query: 117 PLDPSRIIDTLSI---------------ARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 P ++DT+ I R + P S L + RYG+ + + H AL Sbjct: 156 IEFP--VVDTMQIETTLQQKLKGGILNKIRGRKPESVR-LGASRARYGLPL--YTPHHAL 210 Query: 162 LDS 164 D+ Sbjct: 211 TDA 213 >gi|251779366|ref|ZP_04822286.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083681|gb|EES49571.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 309 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 12/170 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D K + P + P + +HGI Sbjct: 1 MNFVAIDFETA--NEKRNSPCSIGIVVVKD-GKIIEEVHHLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125 ++D+ F ++ + +FNE IAHNA FD+ + L+ N + PS + I Sbjct: 58 PRMVQDELEFDKVWEKIKHYFNENLV--IAHNASFDISVLRNTLELYNIEM--PSFQYIC 113 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ +++ + + N LN++ G H H AL D+ ++ + + Sbjct: 114 TMKLSKNFYSNLDNARLNTVNNFLGYEFKH---HDALADAMACGNILLNI 160 >gi|220913055|ref|YP_002488364.1| exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] gi|219859933|gb|ACL40275.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter chlorophenolicus A6] Length = 336 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGIT + + F +F E F + AHNA FD+G I + L+ ++ P Sbjct: 55 VRIHGITAADVAGRSRFGDLFPEIGAFIGDD--VLAAHNAAFDLGVIRSALE-VSGLPGP 111 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + T+ ++RR + N L + G+ + H A D+ + + I + Sbjct: 112 AYDYVCTVMLSRRCYSLVSNSLPFAAEEAGVPLLR--HHDAAEDARACAGILIDI 164 >gi|332687228|ref|YP_004457002.1| exonuclease [Melissococcus plutonius ATCC 35311] gi|332371237|dbj|BAK22193.1| exonuclease [Melissococcus plutonius ATCC 35311] Length = 176 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 10/116 (8%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++HGI E + D P F I+ FF + N +AHNA FD + + L K P Sbjct: 50 IQIHGIHPEDVTDAPKFPEIWQGIQLFF-QLNQLIVAHNAAFDCNVLASCLNYY-KLPQP 107 Query: 120 PSRIIDTLSIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + T+ +R R+ P+ + L+++C+ I ++H H AL DS + + + Sbjct: 108 NYLSLCTVKTSRKFFRELPNHK--LDTICRALNIPLNH---HNALDDSRACAKILL 158 >gi|302329867|gb|ADL20061.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis 1002] gi|308275553|gb|ADO25452.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis I19] Length = 369 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 28/146 (19%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + I+T+G+ R+I + AV + + F + P ++P LHG++ E Sbjct: 44 VALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAVINPG---DNPGPFHLHGLSREE 100 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-------------------- 109 + FS I + + I HN + GF+ +E Sbjct: 101 IAQGKKFSHILKPLGKLIDGRT--LILHNTPYTWGFLVSESRRAMSAAARANRNRYRHRN 158 Query: 110 --LQRINKDPLDPSRIIDTLSIARRK 133 QR+ P P I+DTL+ ARR+ Sbjct: 159 RRRQRVGHIP-RPRMIVDTLATARRQ 183 >gi|150007459|ref|YP_001302202.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC 8503] gi|298375435|ref|ZP_06985392.1| exonuclease [Bacteroides sp. 3_1_19] gi|301310540|ref|ZP_07216479.1| exonuclease [Bacteroides sp. 20_3] gi|149935883|gb|ABR42580.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC 8503] gi|298267935|gb|EFI09591.1| exonuclease [Bacteroides sp. 3_1_19] gi|300832114|gb|EFK62745.1| exonuclease [Bacteroides sp. 20_3] Length = 192 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 21/184 (11%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65 M+ + FD+ETTG+ + + +I ++D T +F +CP+ + EAL++ + Sbjct: 1 MKLLFFDLETTGIKYWRNGVHQISGEIVID-GVTKESFNFNVCPHPQCEIEEEALRICNV 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA---------HNAKFDVGFINAELQRINKD 116 + E ++ P ++ +F + ++ ++ +NA FD F+ A + N D Sbjct: 60 SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQ-NGD 118 Query: 117 PLDPS---------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 S ++ T + R++H + ++ + GI I H A D L Sbjct: 119 NYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLT 178 Query: 168 SDVY 171 ++Y Sbjct: 179 KEIY 182 >gi|117920025|ref|YP_869217.1| exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3] gi|117612357|gb|ABK47811.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3] Length = 228 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 18/186 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D+E TGL+ D+I+ IG V + + + Q L + + ++ +HGI D Sbjct: 43 IAMDLEMTGLNPLQDQILSIGLVPIENGAIPLMGAQQKLV-QIQGSVGQSATIHGILDNH 101 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTLS 128 L + + + W + +AH++ D F+ ++ I ++ + P+ IDTL Sbjct: 102 LTEAVTIEEAMA--WFVAQTRGHVLVAHHSPLDCRFLQQDILSIYHQAIVLPA--IDTLL 157 Query: 129 IAR----RKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---MVGG 178 + + R+H + L + +RYG+ I H AL D+ ++ + M G Sbjct: 158 LEKHRLLREHSVLKEGSLRLGACRERYGLPI--YGAHSALTDALACGELLLAQVASMGGA 215 Query: 179 SQINFG 184 ++ G Sbjct: 216 DELKVG 221 >gi|302205313|gb|ADL09655.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis C231] Length = 348 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 28/146 (19%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + I+T+G+ R+I + AV + + F + P ++P LHG++ E Sbjct: 23 VALSIQTSGIHPSTSRLITVDAVTFTEDGEETDHFHAVINPG---DNPGPFHLHGLSREE 79 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE-------------------- 109 + FS I + + I HN + GF+ +E Sbjct: 80 IAQGKKFSHILKPLGKLIDGRT--LILHNTPYTWGFLVSESRRAISAAARANRNRYRHRN 137 Query: 110 --LQRINKDPLDPSRIIDTLSIARRK 133 QR+ P P I+DTL+ ARR+ Sbjct: 138 RRRQRVGHIP-RPRMIVDTLATARRQ 162 >gi|163787271|ref|ZP_02181718.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1] gi|159877159|gb|EDP71216.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1] Length = 1128 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 29/157 (18%) Query: 10 IVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58 ++FD ETTGL + D R I+I A +L D Q +L P G + Sbjct: 3 LIFDTETTGLPKRWDAPITDTDNWPRCIQI-AWQLHDAMGNCIEHQDYLVKPEGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KD 116 A K+HGI+ E +++ S S + +F ++ + N KFD+ + AE R + + Sbjct: 62 AEKIHGISTELAQEQGVSLSEVLEKFNTALSKTKF-VVGQNVKFDLNIMGAEFVREDVAN 120 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCK----RYG 149 PL ++DT + +H + SLC+ RYG Sbjct: 121 PLQELPVLDTCT----EHTA------SLCQIPGGRYG 147 >gi|119960742|ref|YP_948285.1| DNA polymerase III epsilon subunit [Arthrobacter aurescens TC1] gi|119947601|gb|ABM06512.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens TC1] Length = 336 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 5/114 (4%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI E + +P F +F E F + AHNA FD+G I + L+ ++ Sbjct: 56 RIHGIRAEDVAGRPRFGELFPEIGAFIGDD--VLAAHNAAFDLGVIRSGLE-VSGLAGPA 112 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + T+ ++RR + N L + G+ + + H A D+ + + + + Sbjct: 113 YDYVCTVMLSRRCYSLVSNSLPYAAEEAGVPLVNH--HDAAEDARACAGILVDI 164 >gi|312128938|ref|YP_003996278.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella byssophila DSM 17132] gi|311905484|gb|ADQ15925.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella byssophila DSM 17132] Length = 303 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 11/125 (8%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI E + DKP F+ ++SE +N IAHNA FD+ + L+ P P+ Sbjct: 53 IHGIRPEHVADKPEFNELWSEIKPLV--ENKFLIAHNAGFDISVLRRTLEAYQL-PF-PT 108 Query: 122 RIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVG 177 I +K DL +LCK I + H H A DS +++ +K + G Sbjct: 109 LNYSCSYIFSKKVWQGLPAYDLKTLCKVNNINLKH---HRAGADSKATAELTLKAFEIAG 165 Query: 178 GSQIN 182 S I+ Sbjct: 166 VSSID 170 >gi|168494862|ref|ZP_02719005.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|168494874|ref|ZP_02719017.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|168495024|ref|ZP_02719167.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575147|gb|EDT95675.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575215|gb|EDT95743.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575301|gb|EDT95829.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] Length = 307 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT E + D P+F + DF +AH A+FD+G + Q+ D D Sbjct: 54 IHGITPEDVLDSPTFPEVRKAIVDFIGSDIV--VAHFAQFDMGALKDVYQKYELD-FDNI 110 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 I + +A+ P N L L K I + H H AL D+ Sbjct: 111 EYICSYRLAKVALPGQLNYKLKRLAKNLNIELDH---HNALSDA 151 >gi|168490120|ref|ZP_02714319.1| exonuclease family protein [Streptococcus pneumoniae SP195] gi|183571500|gb|EDT92028.1| exonuclease family protein [Streptococcus pneumoniae SP195] Length = 307 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT E + D P+F + DF +AH A+FD+G + Q+ D D Sbjct: 54 IHGITPEDVLDSPTFPEVRKAIVDFIGSDIV--VAHFAQFDMGALKDVYQKYELD-FDNI 110 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 I + +A+ P N L L K I + H H AL D+ Sbjct: 111 EYICSYRLAKVALPGQLNYKLKRLAKNLNIELDH---HNALSDA 151 >gi|22536702|ref|NP_687553.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus agalactiae 2603V/R] gi|25010639|ref|NP_735034.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus agalactiae NEM316] gi|22533544|gb|AAM99425.1|AE014216_1 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus agalactiae 2603V/R] gi|23094993|emb|CAD46214.1| Unknown [Streptococcus agalactiae NEM316] Length = 835 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L P F + + ++ ++AHN KFD + +L + P Sbjct: 73 LTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTPR 130 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +++ +P + L +L + I ++ H A+ D+ + ++IK+ Sbjct: 131 --IDTVELSQVFYPCLEKYSLGALAESLNIELT--DAHTAIADARATAQLFIKL 180 >gi|77405453|ref|ZP_00782546.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae H36B] gi|77175946|gb|EAO78722.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae H36B] Length = 835 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L P F + + ++ ++AHN KFD + +L + P Sbjct: 73 LTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTPR 130 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +++ +P + L +L + I ++ H A+ D+ + ++IK+ Sbjct: 131 --IDTVELSQVFYPCLEKYSLGALAESLNIELT--DAHTAIADARATAQLFIKL 180 >gi|153933783|ref|YP_001382659.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str. ATCC 19397] gi|153935123|ref|YP_001386211.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str. Hall] gi|152929827|gb|ABS35327.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A str. ATCC 19397] gi|152931037|gb|ABS36536.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A str. Hall] Length = 309 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 10/169 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F I+ + +FN N IAHNA FD+ + + L+ N + I T Sbjct: 58 PHMVQDELEFDKIWGKIKGYFN--NNLVIAHNASFDMSVLRSTLKLYN-IKMPSFEYICT 114 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ + + N LN++ G + H AL D+ S++ I + Sbjct: 115 MKLSKNFYSNIDNARLNTVNNFLGYKFKY---HDALADAMACSNILINI 160 >gi|306836447|ref|ZP_07469422.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49726] gi|304567666|gb|EFM43256.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49726] Length = 454 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 15/113 (13%) Query: 10 IVFDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLH 63 + D+ET ND I +IGAV D +T Q +LC P G ++ E + +H Sbjct: 111 VAVDVETA-----NDNWGSICQIGAVRYRDGGETAS--QSWLCTPPPGLEHFAEINISIH 163 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 GIT ++ F++ +E +DF +AHN +FD + + L D Sbjct: 164 GITAADVEGAMPFATAAAELFDFIGSDVI--VAHNVQFDSSALRSGLLAAGAD 214 >gi|110803333|ref|YP_699430.1| exonuclease family protein [Clostridium perfringens SM101] gi|110683834|gb|ABG87204.1| exonuclease family protein [Clostridium perfringens SM101] Length = 300 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 28/173 (16%) Query: 19 LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFS 77 LDS N+ IIEIGA++L + + F+ ++ P+ K +P+ + + GIT++ LKD F Sbjct: 33 LDSYNE-IIEIGAIKLNKFMQEVDEFKTYIKPSVFKVLNPKIIDITGITEDHLKDGIKFE 91 Query: 78 SIFSEFWDFFNEQN--AEW-------IAHNAKF----DVGFINAELQRINKDPLDPSRII 124 DF E + W I +NAK+ ++ +I K +D + Sbjct: 92 DAMDNLKDFIGEDDILCSWATDDIVHIVNNAKYHSYKNISWI--------KKYIDIQKYC 143 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 T +A +K S ++ L L I I H AL D+ ++V+ ++ G Sbjct: 144 -TKILAHKKSLSLKHALEEL----KIKIDKSKLHDALNDAVYTAEVFKRLYNG 191 >gi|76786927|ref|YP_329306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus agalactiae A909] gi|77411574|ref|ZP_00787916.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae CJB111] gi|76561984|gb|ABA44568.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae A909] gi|77162359|gb|EAO73328.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae CJB111] Length = 835 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L P F + + ++ ++AHN KFD + +L + P Sbjct: 73 LTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTPR 130 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +++ +P + L +L + I ++ H A+ D+ + ++IK+ Sbjct: 131 --IDTVELSQVFYPCLEKYSLGALAESLNIELT--DAHTAIADARATAQLFIKL 180 >gi|110636436|ref|YP_676643.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC 33406] gi|110279117|gb|ABG57303.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC 33406] Length = 183 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 7/150 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M D ET ++ I +G + +++ K +T + P S +++HGIT Sbjct: 1 MNFTALDFETA--NTHKTSICAVG-MAIVEDGKVVKTISKLIKPVPDFYSYWNVQIHGIT 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D P F ++ E + + +AHNA FDVG + + L ++ + + Sbjct: 58 PDMTADAPYFIDVWQELKQYIDYST--LVAHNAAFDVGALRSILTT-HEVSFPKTDYFCS 114 Query: 127 LSIARRKHPSSRND-LNSLCKRYGITISHR 155 S++R+ N L+++C+ + ++H Sbjct: 115 CSVSRKVFKEIENHKLSTVCRHIDVPLNHH 144 >gi|77413703|ref|ZP_00789886.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus agalactiae 515] gi|77160248|gb|EAO71376.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus agalactiae 515] Length = 835 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L P F + + ++ ++AHN KFD + +L + P Sbjct: 73 LTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTPR 130 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +++ +P + L +L + I ++ H A+ D+ + ++IK+ Sbjct: 131 --IDTVELSQVFYPCLEKYSLGALAESLNIELT--DAHTAIADARATAQLFIKL 180 >gi|172058850|ref|YP_001815310.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium sibiricum 255-15] gi|171991371|gb|ACB62293.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium sibiricum 255-15] Length = 190 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 7/165 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET ++N R I +L + + QV + P ++ +++HGI Sbjct: 6 LAIDFETA---NRNSRSICAFGWSVLSEGRVVTSEQVLINPEEDFDAGN-IRVHGIRPSD 61 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ F + AE IAHNA FD+G + +Q+ + + + T+ Sbjct: 62 VWDAPALPEAMEAHGLFKLIEKAELVIAHNAAFDMGALQKAVQKYDLYQMPTFQYGCTVK 121 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHR-SKHGALLDSHLLSDVY 171 ++R+ +P N LN++ + ++ H +K A + + LL D++ Sbjct: 122 LSRKLYPWLPNHKLNTMAEFLNVSFKHHDAKEDAYICALLLQDMF 166 >gi|328464770|gb|EGF36087.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus MTCC 5462] Length = 140 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 P+ +++HGIT + ++++P+F ++ F+ AHNA FDV + L R Sbjct: 47 PQNIRIHGITPDMVQNQPTFDRVWPHIQMFYTPGRIV-TAHNAPFDVSVLRLTLDRYGI- 104 Query: 117 PLDPS-RIIDTL 127 PS ++IDT+ Sbjct: 105 -AAPSYQVIDTV 115 >gi|198282567|ref|YP_002218888.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667091|ref|YP_002424758.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247088|gb|ACH82681.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519304|gb|ACK79890.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270] Length = 201 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 48/196 (24%) Query: 10 IVFDIETTGLDSKNDRIIEIGAV-------ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +V D+ET G DS+ + ++E+ A+ +L + + Q F G P AL Sbjct: 14 VVVDVETAGFDSERNALLEVAAIIIGGEVGQLRPVATHHFQVQPF---AGAVLDPAALAF 70 Query: 63 HGITDEF------LKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQR- 112 GI D F + ++ + IF + A + HNA FD+ FI A +R Sbjct: 71 TGI-DPFQALRGAVSEEEALRGIFRPVRTAVKVAQCRRAILVGHNAAFDLSFIKAAEKRT 129 Query: 113 -INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS------------HRSKHG 159 + +P DT+S+A YG T+ H H Sbjct: 130 GVKNNPFHLFSTFDTVSLAGLA--------------YGETVLAKAALAAGLDWDHTQAHS 175 Query: 160 ALLDSHLLSDVYIKMM 175 AL D+ ++++ +++ Sbjct: 176 ALYDARQTAELFCRIV 191 >gi|163816457|ref|ZP_02207821.1| hypothetical protein COPEUT_02646 [Coprococcus eutactus ATCC 27759] gi|158448157|gb|EDP25152.1| hypothetical protein COPEUT_02646 [Coprococcus eutactus ATCC 27759] Length = 232 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%) Query: 6 KMRKIVFDIETTGLDSK--NDR------IIEIGAVELLDYSKTNRTFQVFLCPN-GRKNS 56 KM IV D+E LD K N+R +IEIGAV + + + F++++ P K Sbjct: 9 KMVHIVVDLEMNWLDFKYENERKISTNEVIEIGAVTMNEKFEEIGAFKMYVKPQFNEKVV 68 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEF 83 + KL GIT + L+D P F+ F F Sbjct: 69 KKVEKLTGITMDKLQDSPVFADAFDAF 95 >gi|227503316|ref|ZP_03933365.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49725] gi|227075819|gb|EEI13782.1| DNA polymerase III epsilon subunit [Corynebacterium accolens ATCC 49725] Length = 470 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 15/113 (13%) Query: 10 IVFDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLC--PNGRKNSPEA-LKLH 63 + D+ET ND I +IGAV D +T Q +LC P G ++ E + +H Sbjct: 127 VAVDVETA-----NDNWGSICQIGAVRYRDGGETAS--QSWLCTPPPGLEHFAEINISIH 179 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 GIT ++ F++ +E +DF +AHN +FD + + L D Sbjct: 180 GITAADVEGAMPFATAAAELFDFIGSDVI--VAHNVQFDSSALRSGLLAAGAD 230 >gi|315655203|ref|ZP_07908104.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|315490458|gb|EFU80082.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 240 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 29/160 (18%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTG+ + DRI + + ++ + + R ++ G P A +++G+TDE+L+ Sbjct: 19 FDTETTGVFTSRDRIATVSLIRRINGTDSPR---YWIINPGVPMPPAAGRVNGLTDEYLQ 75 Query: 72 DKPSFSSI-FSEFWDFFNE---QNAEWIAHNAKFDVGFINAEL---------QRINK--- 115 + E E + + N FD + AEL QR+ Sbjct: 76 ANGVDPRVGLEEVAVIIAETMRRGVPVVGFNVTFDFAILEAELARHDLPTLRQRLEGSVE 135 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152 DPL RI+D ++ + +L S+C Y + + Sbjct: 136 PIVDPLVLDRILD-------RYRKGKRNLASVCTAYDLPL 168 >gi|288800251|ref|ZP_06405709.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299 str. F0039] gi|288332464|gb|EFC70944.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299 str. F0039] Length = 896 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 17/140 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK------L 62 +VFD ETTGL+ D I++I AV++ N F++F+ + ++ P L + Sbjct: 515 VVFDTETTGLNVLEDDIVQIAAVKIAKGKVLENERFEIFI--DTKRPIPAMLGDIENPLI 572 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119 I L + F E+ D A + HNA +D + L R Sbjct: 573 EEIKKHTLHTPAEALARFMEYID-----GAMLVGHNATYDYQILYNNLLRYLPQYTFLQK 627 Query: 120 PSRIIDTLSIARRKHPSSRN 139 S IDTL + R PS +N Sbjct: 628 HSSYIDTLKLTRLLQPSLKN 647 >gi|320536084|ref|ZP_08036140.1| exonuclease [Treponema phagedenis F0421] gi|320147069|gb|EFW38629.1| exonuclease [Treponema phagedenis F0421] Length = 190 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 74/197 (37%), Gaps = 30/197 (15%) Query: 7 MRKIVFDIETTGLDSKNDRIIEI-------GAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M I D ETTGL+ +N EI G V K N + L EA Sbjct: 1 MNTIWCDTETTGLEPENSGAFEIAFIFAGKGKVTCERLFKLNPLNETIL------YHEEA 54 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNE--------QNAEWIAHNAKFDVGFINAELQ 111 K HG+++E ++ P I +FF + + + +N FD + A Sbjct: 55 AKTHGVSEEEIRSFPPAEEIVPNIANFFQQAIHVFGDGEKLTFAGYNCNFDYRHLEALFN 114 Query: 112 RINKDPLDP-SRIIDTLSIARRKH-----PSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 R D S+ D L ++ P N L ++CK G+ + + H AL D Sbjct: 115 RCGLTLADYFSKQFDALEFVKKATRQKAIPRLENLKLGTVCKSLGVNL--ENAHTALADI 172 Query: 165 HLLSDVYIKMMVGGSQI 181 + I++ G ++ Sbjct: 173 QATRALCIELFKRGVKV 189 >gi|330812208|ref|YP_004356670.1| DNA polymerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380316|gb|AEA71666.1| putative DNA polymerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 235 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 12/109 (11%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEALKL 62 R +V D+ETTGL+ D+++ IGAV + +D+S+ RT Q + +K P L + Sbjct: 40 RWVVLDLETTGLNLNKDQVLSIGAVVIEDGAIDFSQQFERTLQC----DKQKLGPSVL-I 94 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 HG+ + + F +F ++ +A +A FD + L+ Sbjct: 95 HGLAPSAIAAGSDPAEALLAFMEFVG--DSPLLAFHAPFDSHMLGRALK 141 >gi|270635229|ref|ZP_06222077.1| ribonuclease T [Haemophilus influenzae HK1212] gi|270317424|gb|EFA28930.1| ribonuclease T [Haemophilus influenzae HK1212] Length = 151 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%) Query: 90 QNAEWIAHNAKFDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR 147 Q + +AHNA FD F+ A +R + ++P P + DT S+A + L C+ Sbjct: 54 QRSIIVAHNATFDQSFVMAAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQA 111 Query: 148 YGITISHRSKHGALLDSHLLSDVYIKMM 175 I + H AL D+ + ++ M+ Sbjct: 112 AKIPFDGKQAHSALYDTERTAKLFCYMV 139 >gi|163857665|ref|YP_001631963.1| putative exonuclease [Bordetella petrii DSM 12804] gi|163261393|emb|CAP43695.1| putative exonuclease [Bordetella petrii] Length = 177 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 8/149 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD-EF 69 V D+ETTGL + + I+E AV + R F + G P +L GIT E Sbjct: 10 VADLETTGLSTASCEILEFAAVHVGPDGAIEREFSQVVRTRG-TVPPFITRLTGITQAEV 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + FS F F +A HNA FD F+ A + + + TL + Sbjct: 69 DGHGIPVAEAFSAFLAFLA--DAPVFFHNASFDCRFLQAAAEHTGLPFANATHC--TLQL 124 Query: 130 ARRKHPS-SRNDLNSLCKRYGIT-ISHRS 156 AR+ P + L L + G +HR+ Sbjct: 125 ARQAWPELPSHKLQVLARHVGAADPTHRA 153 >gi|332715841|ref|YP_004443307.1| DNA polymerase III subunit epsilon [Agrobacterium sp. H13-3] gi|325062526|gb|ADY66216.1| DNA polymerase III subunit epsilon [Agrobacterium sp. H13-3] Length = 326 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 8/105 (7%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLH 63 + ++ D ETTGL+ + D IIEIG + D V+ L G E +L Sbjct: 72 QGVILDTETTGLNHRTDEIIEIGVITFTFDDQGTIGDVTGVYGGLRQPGTSIPEEITRLT 131 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 GITDE + + +I + E IAHNA FD F A Sbjct: 132 GITDEMVAGQ----TIDIDRLTSLVEGADLIIAHNAGFDRPFCEA 172 >gi|320094495|ref|ZP_08026269.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 178 str. F0338] gi|319978573|gb|EFW10142.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 178 str. F0338] Length = 238 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 23/175 (13%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTG DR++ V L + +L G + +A +HGIT E+ + Sbjct: 11 FDTETTGTSPFKDRLVTAALV--LRVEGRDDQVATWLADPGVEIPEQASAVHGITTEYAR 68 Query: 72 D--KPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRIN----KDPLD 119 + +P + E E W +A NA +D+ ++ EL R + LD Sbjct: 69 EHGRP-VEEVLEEVAGCLTEH---WFRGFPVVAFNASYDITLVDRELSRHGLATFAERLD 124 Query: 120 --PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 P ++D L + R+ + + L + YG+ S H A +D + +V Sbjct: 125 GEPMLVVDPLVLDRKLDRFRKGKKTLTDMAPVYGVEASP-DAHTAEVDVAMTLNV 178 >gi|116051228|ref|YP_789941.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa UCBPP-PA14] gi|296388274|ref|ZP_06877749.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1] gi|115586449|gb|ABJ12464.1| putative nuclease [Pseudomonas aeruginosa UCBPP-PA14] Length = 208 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 39/177 (22%), Positives = 87/177 (49%), Gaps = 13/177 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD 67 I D+ETT LD + ++ IGAV L+ K ++++ P ++ E++++H + Sbjct: 33 ISLDLETTSLDPRRADVLSIGAV-LVRRGKLVMGERLELYVEPPPSLDA-ESIRIHKLRR 90 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDT 126 L+ + + F ++ + + FDV +N L+++ ++ +PS I + Sbjct: 91 ADLEGQLQLEQALRQLLAFIGDRPL--LGYYLSFDVAVLNRHLRQLFDRQLHNPSIEISS 148 Query: 127 LSIAR--RKHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 L + R P + DL ++L + + +S R H AL D+ ++ ++++++ G + Sbjct: 149 LYHRKVSRHFPDAHIDLRFDTLARALDVPVSGR--HTALGDAQAVALMFMRLLKGPA 203 >gi|76798115|ref|ZP_00780369.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae 18RS21] gi|76586523|gb|EAO63027.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae 18RS21] Length = 740 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L P F + + ++ ++AHN KFD + +L + P Sbjct: 73 LTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTPR 130 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +++ +P + L +L + I ++ H A+ D+ + ++IK+ Sbjct: 131 --IDTVELSQVFYPCLEKYSLGALAESLNIELT--DAHTAIADARATAQLFIKL 180 >gi|330505332|ref|YP_004382201.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] gi|328919618|gb|AEB60449.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01] Length = 233 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 12/175 (6%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALKL 62 ++ R +V D+ETTGL+ + D+++ IGAV ++D+ + F+ L + S L + Sbjct: 37 HEQRLVVLDLETTGLNMRRDQVLAIGAV-VIDHGAIDFAEQFECTLHQPDHQASASTL-I 94 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI + + +F +F ++ +A +A FD + L++ L S Sbjct: 95 HGIAPSEVARGVDPAEGLLDFMEFVG--SSPLLAFHAGFDQRMLARALRQSLGYRLQHS- 151 Query: 123 IIDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D IA P +R L+ +G+ + R H A D+ + +++ + + Sbjct: 152 FFDVAEIAPLLCPQARIRQGGLDDWVAEFGLQVHQR--HNASADALVTAELALML 204 >gi|325970703|ref|YP_004246894.1| exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy] gi|324025941|gb|ADY12700.1| Exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy] Length = 197 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 7/136 (5%) Query: 43 TFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 T+ + P P +H + DE P F I+ + DF + +AHNA FD Sbjct: 35 TYYSLIHPKHPYFDPSMTAVHQLKDEECLAAPEFDVIWPQMRDFIGKDLL--VAHNAVFD 92 Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGAL 161 +G + + + + + + TL+IAR+ P + L+ L YG+ H AL Sbjct: 93 MGVLKGCFEVYDLEARQMTYLC-TLTIARKVWPKMLSYKLSYLVDYYGM---EYQAHYAL 148 Query: 162 LDSHLLSDVYIKMMVG 177 D+ + + K+ G Sbjct: 149 DDAIMCGKMMHKLCYG 164 >gi|227893216|ref|ZP_04011021.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047] gi|227864985|gb|EEJ72406.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047] Length = 177 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++H IT E +K+ P+ + ++ + + + AHNA+FD + L R N + + Sbjct: 50 IQVHQITAEDVKNAPTMAEVWPKIKGLY-QPGMLVAAHNARFDTNVMRQSLARYNIE--E 106 Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +IDTL+ ++ P N L+++ + + H H AL DS + + I Sbjct: 107 PHYLVIDTLATSKLFEPELPNHKLDTVSSTLDVELWHH--HNALSDSEACAGILI 159 >gi|251782080|ref|YP_002996382.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390709|dbj|BAH81168.1| ATP-dependent DNA helicase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 820 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 7/126 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+E T + II++G V +++ + T+Q + P+ S L GITD L Sbjct: 11 VVDLEATNAGA-TAAIIQVGIV-IIEGKEVVETYQTDINPH-EPLSDHIKALTGITDAQL 67 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P FS + ++ ++ ++AHN KFD + L + L P +DT+ +A Sbjct: 68 AQAPEFSQVAKTIYELISD--CVFVAHNVKFDANLLAEALFFEGYELLTPR--VDTVELA 123 Query: 131 RRKHPS 136 + +PS Sbjct: 124 QIFYPS 129 >gi|198274893|ref|ZP_03207425.1| hypothetical protein BACPLE_01052 [Bacteroides plebeius DSM 17135] gi|198272340|gb|EDY96609.1| hypothetical protein BACPLE_01052 [Bacteroides plebeius DSM 17135] Length = 163 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 6/123 (4%) Query: 43 TFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 TF + P + ++HG+T E +D P F +++++ + +AHN FD Sbjct: 35 TFYSLINPEPNYYTYWCSQVHGLTREDTEDAPVFPAVWAQIEPLI--EGLPLVAHNRPFD 92 Query: 103 VGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGAL 161 + A + D D DTL +ARR P N L+++ G + + H AL Sbjct: 93 ESCLKAVFRVYQMDYPD-YEFYDTLCVARRVFPELPNHQLHTVAAACGYRLE--NHHHAL 149 Query: 162 LDS 164 D+ Sbjct: 150 ADA 152 >gi|83311172|ref|YP_421436.1| DNA polymerase III subunit epsilon [Magnetospirillum magneticum AMB-1] gi|82946013|dbj|BAE50877.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 306 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 45/103 (43%), Gaps = 10/103 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-----SPEALKLHG 64 I D+ETTGLD D IIE+ V + Y R F++ G + E KL G Sbjct: 53 IFIDLETTGLDPAKDEIIELAMVPFV-YGLDGRIFEIQDAFQGLRQPSNPIPAEITKLTG 111 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 ITDE + K I F A IAHNA FD FI Sbjct: 112 ITDEMVAGK----VIDPAEVAAFAAPAAIVIAHNAAFDRKFIE 150 >gi|322411431|gb|EFY02339.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 820 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 7/126 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+E T + II++G V +++ + T+Q + P+ S L GITD L Sbjct: 11 VVDLEATNAGA-TAAIIQVGIV-IIEGKEVVETYQTDINPH-EPLSDHIKDLTGITDAQL 67 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P FS + ++ ++ ++AHN KFD + L + L P +DT+ +A Sbjct: 68 AQAPEFSQVAKTIYELISD--CVFVAHNVKFDANLLAEALFFEGYELLTPR--VDTVELA 123 Query: 131 RRKHPS 136 + +PS Sbjct: 124 QIFYPS 129 >gi|331082129|ref|ZP_08331257.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405724|gb|EGG85254.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium 6_1_63FAA] Length = 405 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 15/196 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD+ET + NDRI G + L+ + + + + P R + + L GI Sbjct: 113 IAFDVETP--NKNNDRISYAG-ILLVCNGEIIKNYSTLINPETRFDHFNTV-LTGIDASA 168 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+F + D F + IAHNA FD+ ++ L + P + + T + Sbjct: 169 VCHAPTFKEYWPSIEDLFKKYVI--IAHNANFDLSVLSKTLLHYGLK-VPPIKYVCTYNE 225 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R K P + L S+ + + I + + H A D+ + S ++ + SQ N+ F Sbjct: 226 SRNKFPQLGKYSLKSMAEYFDIPLENH--HDAKSDAQVCSSIFEAI---KSQ-NYMFTPK 279 Query: 189 EDRFFKEEKKTVPNIS 204 E F EEK + NIS Sbjct: 280 EFE-FHEEKTSEFNIS 294 >gi|323126941|gb|ADX24238.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 820 Score = 39.7 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 7/126 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+E T + II++G V +++ + T+Q + P+ S L GITD L Sbjct: 11 VVDLEATNAGA-TAAIIQVGIV-IIEGKEVVETYQTDINPH-EPLSDHIKALTGITDAQL 67 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P FS + ++ ++ ++AHN KFD + L + L P +DT+ +A Sbjct: 68 AQAPEFSQVAKTIYELISD--CVFVAHNVKFDANLLAEALFFEGYELLTPR--VDTVELA 123 Query: 131 RRKHPS 136 + +PS Sbjct: 124 QIFYPS 129 >gi|110597891|ref|ZP_01386173.1| Exonuclease [Chlorobium ferrooxidans DSM 13031] gi|110340468|gb|EAT58954.1| Exonuclease [Chlorobium ferrooxidans DSM 13031] Length = 189 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 14/117 (11%) Query: 10 IVFDIETTGL---------DSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 + FD E+TGL D N R++++ + + + P G PEA Sbjct: 3 LFFDTESTGLPRNWKAPVTDLGNWLRLVQLAYLSFDGVGNQTGSGNFIVRPEGFSIPPEA 62 Query: 60 LKLHGI-TDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRIN 114 +HGI T + L + + EF + + AEW +AHN FD + AE R+ Sbjct: 63 AAIHGISTAQALAEGLELKRVMEEF--YAEVERAEWLVAHNMSFDEKILGAEFLRLG 117 >gi|56460284|ref|YP_155565.1| 3'-5' exonuclease [Idiomarina loihiensis L2TR] gi|56179294|gb|AAV82016.1| 3'-5' exonuclease [Idiomarina loihiensis L2TR] Length = 215 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 28/187 (14%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLD--YSKTNRTFQVFLCPNGRK----NSPEAL 60 +R + DIE+TGLD K +I+ I + + N + VF +G++ SP Sbjct: 25 LRYVALDIESTGLDPKKHQILSIAWMSIHPPVMHLGNAQYHVF--AHGQELELGQSP--- 79 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HG+T + F+ N +A + H+ D F+ ++ P P Sbjct: 80 TIHGLTRQDFLHSSEPKQTFAMLSRALN--DAVLVCHHKGMDWRFLK-HIEAQYGIPFKP 136 Query: 121 SRIIDTLSIARRKHPSSRND----------LNSLCKRYGITISHRSKHGALLDSHLLSDV 170 I DTL A KH RN L++ KRY + H H AL D+ +++ Sbjct: 137 LAIFDTL--AFEKHKLERNPHQPIYGGQLALSACRKRYNLPDYH--AHHALTDTVACAEL 192 Query: 171 YIKMMVG 177 ++ G Sbjct: 193 FLAQCYG 199 >gi|295094549|emb|CBK83640.1| Inhibitor of the KinA pathway to sporulation, predicted exonuclease [Coprococcus sp. ART55/1] Length = 216 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 10/86 (11%) Query: 7 MRKIVFDIETTGLDSKNDR--------IIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSP 57 M + D E +DS+ + IIEIGAV+L DY++ + +F+ ++ P + Sbjct: 1 MIYVFVDFEMNMIDSEYKKEKKICKSEIIEIGAVKLDEDYNEID-SFKSYVKPAYGTMAS 59 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEF 83 +KL GITD+ ++D PS++ F Sbjct: 60 RIIKLTGITDDMVEDAPSYAFAMGSF 85 >gi|167464941|ref|ZP_02330030.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae subsp. larvae BRL-230010] Length = 89 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 7 MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63 MR+I VFD+ETTGLD D+I EI A+ D + V + N G K +PE + L Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEITAIR-TDLIREYGRLDVRITKNSGTKLTPEIINLT 59 Query: 64 GITDEFLK 71 GI + ++ Sbjct: 60 GINESMMR 67 >gi|94267095|ref|ZP_01290732.1| Exonuclease [delta proteobacterium MLMS-1] gi|94268501|ref|ZP_01291197.1| Exonuclease [delta proteobacterium MLMS-1] gi|93451582|gb|EAT02387.1| Exonuclease [delta proteobacterium MLMS-1] gi|93452187|gb|EAT02848.1| Exonuclease [delta proteobacterium MLMS-1] Length = 161 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 6/95 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQRINKDPLDP 120 +HG+ E ++ PSF I+ E E++A HNA FD G +NA P P Sbjct: 52 IHGLGWEDVRRAPSFGEIWPEI--AAELAGVEFLAAHNASFDRGVLNACCHAHGLAP--P 107 Query: 121 S-RIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154 S + T+ +AR++ L+ +C+R I ++H Sbjct: 108 SLPFVCTVQLARQRWNIRPTKLSDVCRRLDIALNH 142 >gi|91215241|ref|ZP_01252213.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755] gi|91186846|gb|EAS73217.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755] Length = 256 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 5/106 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG++ DRI+EI +++ + N+ + G E +HGI+DE + Sbjct: 12 FDLETTGINISKDRIVEISILKV--FENNNKESYTWKVNPGIPIPKETTAIHGISDEDVV 69 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 ++P F + + + + +N+ +FD+ + E+ R D Sbjct: 70 NEPKFDELAPKINAMI--KGCDLGGYNSNRFDIPLLAEEMLRTGID 113 >gi|119944727|ref|YP_942407.1| DNA polymerase III subunit epsilon [Psychromonas ingrahamii 37] gi|119863331|gb|ABM02808.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas ingrahamii 37] Length = 238 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 11/124 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP--NGRKNSPEALKLHGIT 66 + D ETTGLDS+ + II IG V L + + ++ P N ++NS + +HGIT Sbjct: 49 VALDFETTGLDSQQNGIISIGLVPFNLQRIFCRKVKEWYINPQDNLQENS---IIIHGIT 105 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIID 125 L+D P I + D + + H + + F++ L+ I++ L P +ID Sbjct: 106 HSDLQDAPDILRILEQLLDELAGKVV--VVHYRRIERDFLDHTLRILIDEGILFP--VID 161 Query: 126 TLSI 129 T+ I Sbjct: 162 TMQI 165 >gi|290968369|ref|ZP_06559909.1| exonuclease [Megasphaera genomosp. type_1 str. 28L] gi|290781556|gb|EFD94144.1| exonuclease [Megasphaera genomosp. type_1 str. 28L] Length = 221 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%) Query: 7 MRKIVFDIETTGLDSKNDR--------IIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSP 57 M+ + D E +D ++ IIEIGAV+L + K ++ ++CP + + Sbjct: 1 MKAVFVDFEMNPIDRRHQEARRICQGEIIEIGAVKLDEDGKEIGAYKEYICPEYTSQMNA 60 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNE 89 L GIT + L F ++F+ F + NE Sbjct: 61 TCQALTGITMDMLTPAAHFQTVFAHFLAWCNE 92 >gi|295425904|ref|ZP_06818582.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus amylolyticus DSM 11664] gi|295064402|gb|EFG55332.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus amylolyticus DSM 11664] Length = 177 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++H IT + ++D P+ + ++ + D + + AHNA+FD + L R + + Sbjct: 50 IEVHQITADDVRDAPTMAEVWPKIKDLY-QPGMLVAAHNARFDTNVMRQSLARYSIS--E 106 Query: 120 PSR-IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +IDTL+ ++ P + L+++ + + + H H AL DS +++ I Sbjct: 107 PHYLVIDTLATSKLLEPDLPDHKLDTVSEALNVNLWHH--HNALSDSEACAEILI 159 >gi|290970730|ref|XP_002668233.1| predicted protein [Naegleria gruberi] gi|284081517|gb|EFC35489.1| predicted protein [Naegleria gruberi] Length = 1135 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 8/122 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + I+++G + L+ + F +++ P S A KLH Sbjct: 890 VVLDLETTGLMPNDHEIVQVGMISLI----SKCAFSIYIKPKYHDWSSHAKKLHVDKMNE 945 Query: 70 LKDKPSFSSIFSEFWDFFNEQN---AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + I ++ + N A + H+ D F+ L + + P+D I++T Sbjct: 946 INNGKQLDQIIIPIHNYLTKNNSCTAVVLVHSTSLDRNFLMKALTK-HGLPIDRYMIVNT 1004 Query: 127 LS 128 +S Sbjct: 1005 IS 1006 >gi|15891836|ref|NP_357508.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str. C58] gi|15160320|gb|AAK90293.1| polymerase epsilon subunit [Agrobacterium tumefaciens str. C58] Length = 326 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 16/107 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL--DYSKTNRTFQVF--LCPNGRKNSPEALKLHGI 65 ++ D ETTGLD + D IIEIG + D ++ L G + +L GI Sbjct: 74 VILDTETTGLDHRTDEIIEIGVITFTFDDQGAIGDVTGIYGGLRQPGVAIPEDITRLTGI 133 Query: 66 TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 TDE + D +S+ + D IAHNA FD F A Sbjct: 134 TDEMVAGQSIDMMRLTSLIAHA-DLI-------IAHNAGFDRPFCEA 172 >gi|51596199|ref|YP_070390.1| Orf81 bacteriophage 186 [Yersinia pseudotuberculosis IP 32953] gi|51589481|emb|CAH21103.1| similar to Orf81 bacteriophage 186 [Yersinia pseudotuberculosis IP 32953] Length = 217 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGL + + IIEI ++ T + L + E +HGIT+E Sbjct: 46 LILDTETTGLGN-DAEIIEISIIDC-----TGKILLDTLVKPLKAIPAEVTAIHGITNEM 99 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 + D P++ I +F N++ + +NA FD I Sbjct: 100 VADAPTWRDIHYQFMTLTNDRTL--LIYNALFDSRLI 134 >gi|152993185|ref|YP_001358906.1| exonuclease [Sulfurovum sp. NBC37-1] gi|151425046|dbj|BAF72549.1| exonuclease [Sulfurovum sp. NBC37-1] Length = 263 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 15/113 (13%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF--LCPNGRKNSPEALKLHGITDEFL 70 D+E+TG+D KNDR+I++ +++ + F LC + + + +H IT+ L Sbjct: 9 DVESTGVDLKNDRLIQLAFLKV-----QGDKIEAFNDLCYTDIEMNDTVVAIHNITNAML 63 Query: 71 KDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN-----AELQRINKD 116 +DK P + F E + N +IAH + DV + E+Q+++ D Sbjct: 64 EDKYWPYETDAFIEL-EKGNSPANYFIAHGNELDVAMLEHEELILEMQKVDTD 115 >gi|301162194|emb|CBW21739.1| putative exonuclease [Bacteroides fragilis 638R] Length = 175 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 26/175 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I F+ T ++S +G V + D T+ + + P L +HGIT Sbjct: 8 IDFETATGYMESA----CAVGIVTVTDGEITDEYYSLIQPPENEYWRANML-VHGITPGM 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F +I+ E Q +AHN +FD + ++ D D LS+ Sbjct: 63 TESLPGFHAIYPEVKKRL--QGKVVVAHNEQFDRNVLKNTMRMYGLD-------YDELSL 113 Query: 130 ARRKHPSSR---------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + R +L++ C+R GI + H H AL D+ + +Y+ + Sbjct: 114 PERWECTCRIYRSLGYKPVNLSACCEREGIELKH---HEALSDARGCAKLYLNFL 165 >gi|300781342|ref|ZP_07091196.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] gi|300533049|gb|EFK54110.1| DNA polymerase III epsilon subunit [Corynebacterium genitalium ATCC 33030] Length = 194 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 12/173 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL ++ IG V + D F+ + ++ +HG+TD+ Sbjct: 23 LAVDVETTGLKPDKHHLVSIGWVPVTDRVIDLSGAGYFVLAGA--SVGDSATVHGVTDDD 80 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRIIDTL 127 + + + + + + E A +AH A+ + GFI+A +R+ + L + DTL Sbjct: 81 IAREGVDAQVALDAFLQAIEGRA-LLAHFAQMETGFIDALHKRVYGKRFRLREDEVEDTL 139 Query: 128 SIARR------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S+ RR +P DL R + H AL D+ +++Y+ + Sbjct: 140 SLERRHMERMATYPRG-EDLRLARVRSRYNLPDYGNHNALTDALACAELYLAL 191 >gi|295692577|ref|YP_003601187.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease [Lactobacillus crispatus ST1] gi|295030683|emb|CBL50162.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus crispatus ST1] Length = 177 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++H IT E +K+ P+ + ++ + + + AHNA+FD + L R + + Sbjct: 50 IQIHQITAEDVKNAPTMAEVWPHIKELY-QPGMLVAAHNARFDTNVMRQSLARYGIE--E 106 Query: 120 PSR-IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P +IDTL+ ++ P + L+++ + + + H H AL DS + + IK Sbjct: 107 PHYLVIDTLASSKLLEPELPDHKLDTVSEALNVELWHH--HNALSDSEACAGILIK 160 >gi|171742298|ref|ZP_02918105.1| hypothetical protein BIFDEN_01404 [Bifidobacterium dentium ATCC 27678] gi|171277912|gb|EDT45573.1| hypothetical protein BIFDEN_01404 [Bifidobacterium dentium ATCC 27678] Length = 586 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 77/199 (38%), Gaps = 50/199 (25%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLD-------------------------YSKTNRTFQV 46 DIETTG D II++G E ++ Y + +F V Sbjct: 359 VDIETTGTDPARTYIIDVG-FEFMNMMSPRPADAPAEYRYEQSSYVTGDAYGQARLSFGV 417 Query: 47 FLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNA 99 N + L+L GI ++D +F E W EQ ++AHNA Sbjct: 418 -TPENAAVGNDLILRLTGID---VRDLAGGPRLFDE-WPAAQIGLLQRLEQQ-PYVAHNA 471 Query: 100 KFDVGFI------NAELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149 +F+ GF AE R D L SR D SI +HP N L S KR G Sbjct: 472 RFEHGFFMLNIAGYAESYRAGNITIIDTLPMSRRWDDGSIPDDEHPYGDNTLESYAKRQG 531 Query: 150 ITISHRS-KHGALLDSHLL 167 S +S +H L D+H++ Sbjct: 532 ALDSSKSERHLGLEDAHIM 550 >gi|160901390|ref|YP_001566972.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1] gi|160366974|gb|ABX38587.1| Exonuclease RNase T and DNA polymerase III [Delftia acidovorans SPH-1] Length = 212 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 10/173 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD + D+II IGAV ++ + L R +++++H + + Sbjct: 35 VALDCETTGLDVRCDQIISIGAVRIVGERILSSERLELLVRPSRSVPGDSVRIHRLRERD 94 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDTLS 128 L + ++ F + + + +FDV I L+ L RI + L Sbjct: 95 LARGLAIEDALAQLLRFIGSRPL--VGYYLEFDVAMIERVLRPWLGTGLPNERIEVSALY 152 Query: 129 IARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R + + DL + + R H AL D+ + + +IK+ Sbjct: 153 YDHRFRQLLPWQQQAPEIDLRFATLMANLGLPQREAHDALNDAVMAALAFIKL 205 >gi|262045749|ref|ZP_06018713.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] gi|260573708|gb|EEX30264.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] Length = 177 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++H IT E +K+ P+ + ++ + + + AHNA+FD + L R + + Sbjct: 50 IQVHQITAEDVKNAPTMAEVWPHIKELY-QPGMLVAAHNARFDTNVMRQSLARYGIE--E 106 Query: 120 PSR-IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P +IDTL+ ++ P + L+++ + + + H H AL DS + + IK Sbjct: 107 PHYLVIDTLASSKLLEPELPDHKLDTVSEALSVELWHH--HNALSDSEACAGILIK 160 >gi|160893764|ref|ZP_02074548.1| hypothetical protein CLOL250_01318 [Clostridium sp. L2-50] gi|156864749|gb|EDO58180.1| hypothetical protein CLOL250_01318 [Clostridium sp. L2-50] Length = 216 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%) Query: 7 MRKIVFDIETTGLDSKN--------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M I D E +D+ + + IIEIGAV+L D K +F+ ++ P + Sbjct: 1 MEYIFVDFEMNQIDNSHPDELKICKNEIIEIGAVKLDDTYKEIDSFKTYVKPGITPVTSR 60 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEF 83 L GIT+E + D P F+ F Sbjct: 61 ITNLTGITNEMVDDAPDFAIAMDRF 85 >gi|283456597|ref|YP_003361161.1| DNA polymerase III [Bifidobacterium dentium Bd1] gi|283103231|gb|ADB10337.1| DNA polymerase III [Bifidobacterium dentium Bd1] Length = 525 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 11/85 (12%) Query: 94 WIAHNAKFDVGFI------NAELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNS 143 ++AHNA+F+ GF AE R D L SR D SI +HP N L S Sbjct: 405 YVAHNARFEHGFFMLNIAGYAESYRAGNITIIDTLPMSRRWDDGSIPDDEHPYGDNTLES 464 Query: 144 LCKRYGITISHRS-KHGALLDSHLL 167 KR G S +S +H L D+H++ Sbjct: 465 YAKRQGALDSSKSERHLGLEDAHIM 489 >gi|227541256|ref|ZP_03971305.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227182972|gb|EEI63944.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 1246 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V +++T+G+ S+ DRIIEIG V K T+ + P R S A +HGI++ Sbjct: 851 VLNVKTSGI-SERDRIIEIGIVLATLNGKVEGTYTTLINPR-RSFSDSA--IHGISERMT 906 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P F + + + + + IAH+A F + E R N Sbjct: 907 VATPVFEEVADDIAELLDRRI--LIAHDAPFVSKQLGREFSRSN 948 >gi|148986116|ref|ZP_01819102.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP3-BS71] gi|149004079|ref|ZP_01828884.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69] gi|147757891|gb|EDK64900.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69] gi|147921830|gb|EDK72957.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP3-BS71] gi|301799167|emb|CBW31680.1| unnamed protein product [Streptococcus pneumoniae OXC141] Length = 307 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT E + D P+F + DF +AH A+FD+G + Q+ D D Sbjct: 54 IHGITPEDVLDSPTFPEVRKSIVDFIGLDIV--VAHFAQFDMGALKDVYQKYELD-FDNI 110 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 I + +A+ P N L L K I + H H AL D+ Sbjct: 111 EYICSYRLAKVALPGQLNYKLKRLAKNLNIELDH---HNALSDA 151 >gi|18311136|ref|NP_563070.1| exonuclease family protein [Clostridium perfringens str. 13] gi|110799345|ref|YP_696832.1| exonuclease family protein [Clostridium perfringens ATCC 13124] gi|168205611|ref|ZP_02631616.1| exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|168208856|ref|ZP_02634481.1| exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|168212809|ref|ZP_02638434.1| exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|168215781|ref|ZP_02641406.1| exonuclease family protein [Clostridium perfringens NCTC 8239] gi|169344238|ref|ZP_02865220.1| exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|182623972|ref|ZP_02951760.1| exonuclease family protein [Clostridium perfringens D str. JGS1721] gi|18145819|dbj|BAB81860.1| probable DNA polymerase III epsilon chain [Clostridium perfringens str. 13] gi|110673992|gb|ABG82979.1| exonuclease family protein [Clostridium perfringens ATCC 13124] gi|169297697|gb|EDS79797.1| exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|170662857|gb|EDT15540.1| exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|170713011|gb|EDT25193.1| exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|170715467|gb|EDT27649.1| exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|177910865|gb|EDT73219.1| exonuclease family protein [Clostridium perfringens D str. JGS1721] gi|182382180|gb|EDT79659.1| exonuclease family protein [Clostridium perfringens NCTC 8239] Length = 300 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 11/93 (11%) Query: 19 LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFS 77 LDS N+ IIEIGA++L + + F+ ++ P+ K +P+ + + GIT++ LKD F Sbjct: 33 LDSYNE-IIEIGAIKLNKFMQEVDEFKTYIKPSVFKVLNPKIIDITGITEDHLKDGIKFE 91 Query: 78 SIFSEFWDFFNEQN--AEW-------IAHNAKF 101 DF E + W I +NAK+ Sbjct: 92 DAMDNLKDFIGEDDILCSWATDDIVHIVNNAKY 124 >gi|227832929|ref|YP_002834636.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] gi|227453945|gb|ACP32698.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum ATCC 700975] Length = 233 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 23/161 (14%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R + FD+ETT + K RI+ A+ +D + ++ + L G + EA K+HG Sbjct: 14 DATRMLSFDLETTSVKPKEARIV-TSALVRIDGREVDK--REMLADPGVEIPEEAAKIHG 70 Query: 65 ITDEFLKD---------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RI 113 IT E + K + SI+ + WD + I +NA +D+ + A + Sbjct: 71 ITTEKARAEGRPHEEVLKETVDSIY-QAWD----EGLTLIVYNAAYDLSVLRALTGDFTV 125 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154 N DP +ID + RK + L + YG+ +S+ Sbjct: 126 NGPVFDPF-VIDRVKDKWRK---GKRTLEEVSAHYGVELSN 162 >gi|227877226|ref|ZP_03995299.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01] gi|256842782|ref|ZP_05548270.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|256848912|ref|ZP_05554346.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US] gi|293380675|ref|ZP_06626725.1| exonuclease [Lactobacillus crispatus 214-1] gi|312977700|ref|ZP_07789447.1| exonuclease [Lactobacillus crispatus CTV-05] gi|227863082|gb|EEJ70528.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01] gi|256614202|gb|EEU19403.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|256714451|gb|EEU29438.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US] gi|290922772|gb|EFD99724.1| exonuclease [Lactobacillus crispatus 214-1] gi|310895439|gb|EFQ44506.1| exonuclease [Lactobacillus crispatus CTV-05] Length = 177 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 7/116 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++H IT E +K+ P+ + ++ + + + AHNA+FD + L R + + Sbjct: 50 IQVHQITAEDVKNAPTMAEVWPHIKELY-QPGMLVAAHNARFDTNVMRQSLARYGIE--E 106 Query: 120 PSR-IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P +IDTL+ ++ P + L+++ + + + H H AL DS + + IK Sbjct: 107 PHYLVIDTLASSKLLEPELPDHKLDTVSEALNVELWHH--HNALSDSEACAGILIK 160 >gi|330448832|ref|ZP_08312478.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493023|dbj|GAA06975.1| exonuclease family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 376 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 6/98 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ETTGLD + ++EI V+ + + P ++ EA +HGI+ E Sbjct: 2 IYLDTETTGLDPDFNEVLEIAIVD----REGKILLNTLVKPQRNESWHEAQVIHGISPEM 57 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 + + P+ + D Q+ +N +FD F++ Sbjct: 58 VANAPTMEDLKPTINDIVKGQHVR--IYNKEFDAAFVD 93 >gi|89098850|ref|ZP_01171731.1| DNA polymerase III subunit epsilon [Bacillus sp. NRRL B-14911] gi|89086526|gb|EAR65646.1| DNA polymerase III subunit epsilon [Bacillus sp. NRRL B-14911] Length = 214 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 23/162 (14%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAV---------ELLDYSKTNRTFQVFLCPNGRKNSPE 58 + ++ D+ETTGL D IIE+ + E+L + + L +N Sbjct: 6 KGLLVDVETTGLAPGGDEIIELAFILFSYDGATGEILQVEEKESFLREPLSSRALRNYSS 65 Query: 59 ALKLHGITDEFLKDKPSFSSIFSE--FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 A ++HGI E ++ + +F + F N+ ++ + AHNA FD F+ +N Sbjct: 66 AYRIHGIPFEMVRGQ-----VFHDESVQSFLNKADSVF-AHNASFDRSFMYQMYPEVN-- 117 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT--ISHRS 156 D + +K+ + + L +L + IT +HR+ Sbjct: 118 --DLKWYCTMKGVQWKKYGFANSKLATLLSAHNITDHQTHRA 157 >gi|124023602|ref|YP_001017909.1| DNA polymerase III subunit epsilon [Prochlorococcus marinus str. MIT 9303] gi|123963888|gb|ABM78644.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9303] Length = 321 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 18/169 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGLD K + +E+GA+ + FL P N+ E+ ++ I E Sbjct: 92 LIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLPV-ETNAAES--INRIPAEV 148 Query: 70 LK-DKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRII 124 + D+P + + D+F + +AHNA FD F +L ++K L + Sbjct: 149 TRLDQP-----WRQGLDYFQALLDAADLLVAHNAGFDRQWFGKDQLPAVSKPWLC---TM 200 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + ++ + SR + L YG+ + + H AL D L++V+ + Sbjct: 201 EDIAWPVDRQLRSRPSVRDLALAYGVPV--WAAHRALTDCIYLAEVFAR 247 >gi|313496718|gb|ADR58084.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1] Length = 236 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 24/178 (13%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEAL 60 + R +V D+ET+GL+ D+++ IGAV + +D+++ RT P + N+ ++ Sbjct: 38 EQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR---PLQKTNA--SV 92 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD- 119 +HG+ L + + DF N+ +A +A FD L R K+ L Sbjct: 93 LIHGLGPSALAAGCDPAEALLDLLDFIG--NSPVLAFHAPFD----QRMLARALKESLGY 146 Query: 120 --PSRIIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S +D +A +P + L+ R+G+ + R H A D+ + +++ + Sbjct: 147 RLQSPFLDIAELAPMLNPDTVLREAGLDDWVARFGLQVEER--HHASADAQVTAELAL 202 >gi|33862659|ref|NP_894219.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9313] gi|33634575|emb|CAE20561.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9313] Length = 309 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 18/169 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGLD K + +E+GA+ + FL P N+ E+ ++ I E Sbjct: 80 LIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLPV-ETNAAES--INRIPAEV 136 Query: 70 LK-DKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRII 124 + D+P + + D+F + +AHNA FD F +L ++K L + Sbjct: 137 TRLDQP-----WRQGLDYFQALLDAADLLVAHNAGFDRQWFGKDQLPAVSKPWL---CTM 188 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + ++ + SR + L YG+ + + H AL D L++V+ + Sbjct: 189 EDIAWPVDRQLRSRPSVRDLALAYGVPV--WAAHRALTDCIYLAEVFAR 235 >gi|306822243|ref|ZP_07455625.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|304554625|gb|EFM42530.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] Length = 560 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 11/85 (12%) Query: 94 WIAHNAKFDVGFI------NAELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNS 143 ++AHNA+F+ GF AE R D L SR D SI +HP N L S Sbjct: 440 YVAHNARFEHGFFMLNIAGYAESYRAGNITIIDTLPMSRRWDDGSIPDDEHPYGDNTLES 499 Query: 144 LCKRYGITISHRS-KHGALLDSHLL 167 KR G S +S +H L D+H++ Sbjct: 500 YAKRQGALDSSKSERHLGLEDAHIM 524 >gi|152988293|ref|YP_001347274.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7] gi|150963451|gb|ABR85476.1| probable nuclease [Pseudomonas aeruginosa PA7] Length = 208 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 41/179 (22%), Positives = 85/179 (47%), Gaps = 17/179 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD 67 I D+ETT LD + I+ IGAV L+ K ++++ P ++ E++++H + Sbjct: 33 ISLDLETTSLDPRRADILSIGAV-LVRRGKLVLGERLELYVEPPPSLDA-ESIRIHKLRR 90 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSRIIDT 126 L+ + F ++ + + FD+ +N L QR + +P+ I+ Sbjct: 91 ADLEGQLQLDEALRRLLAFIGDRPL--LGYYLSFDIAVLNRHLRQRFDLQLRNPT--IEV 146 Query: 127 LSIARRK----HPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 S+ RK P + DL ++L + + +S R H AL D+ ++ ++++++ G + Sbjct: 147 SSLYHRKVSRHFPDAHLDLRFDTLARALDVPVSGR--HTALGDAQAVALMFMRLLKGPA 203 >gi|295693069|ref|YP_003601679.1| CRISPR-associated protein, cas2 [Lactobacillus crispatus ST1] gi|295031175|emb|CBL50654.1| CRISPR-associated protein, Cas2 [Lactobacillus crispatus ST1] Length = 298 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 9/156 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIETTGL+ + D+II IGA++ L+ + + +++ ++ E K+ + L Sbjct: 131 VLDIETTGLNLEKDKIISIGAIKYLENNDCEKFYRLIKVDTEVPDNIE--KITQLNKGVL 188 Query: 71 KDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K + + F ++ + +N FD+ F+N + ++ L + +D LS Sbjct: 189 ANKGIDIKTALLDLRKFLADRIV--VGYNLPFDINFLNRDFKKYCHYSL-LNECVDLLSA 245 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 ++K+ N L+++ + Y I + + H +L D+ Sbjct: 246 VKKKNVFLDNYHLSTVLENYN--IKNSNPHNSLADA 279 >gi|257483040|ref|ZP_05637081.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624800|ref|ZP_06457754.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650623|ref|ZP_06481966.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250] gi|298489203|ref|ZP_07007222.1| Exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156285|gb|EFH97386.1| Exonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330871170|gb|EGH05879.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330891299|gb|EGH23960.1| exonuclease [Pseudomonas syringae pv. mori str. 301020] gi|331011724|gb|EGH91780.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 237 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +V D+ET+GL+ D+++ IGAV + D + + F+ L K SP L +HG Sbjct: 40 QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVL-IHG 98 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + + + +F +F E + + +A FD ++ L+ Sbjct: 99 LAPSAIAAGSEPAEALLDFMEFVGE--SPILGFHAPFDQHMLSRALK 143 >gi|219852875|ref|YP_002467307.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula palustris E1-9c] gi|219547134|gb|ACL17584.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula palustris E1-9c] Length = 193 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 14/126 (11%) Query: 10 IVFDIETTGLDSKN----------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 + FD ETTGL K RI+E+G V + + P+G E+ Sbjct: 3 LFFDTETTGLPKKKHASMHRVANWPRIVELGWVLTDTKGTVIEEAGLLVRPDGFSVPAES 62 Query: 60 LKLHGITDEFLKDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--D 116 +HGIT E ++ S S + + F EQ+ H FD + AEL R D Sbjct: 63 TAIHGITTEQATEQGSAISEVLARFL-LALEQSELICGHQVSFDHRVVGAELIRAGMPVD 121 Query: 117 PLDPSR 122 LD R Sbjct: 122 QLDKPR 127 >gi|159528144|ref|YP_001542707.1| DNA polymerase III subunit epsilon [Fluoribacter dumoffii] gi|159157989|dbj|BAF92678.1| DNA polymerase III subunit epsilon [Fluoribacter dumoffii] Length = 306 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 28/128 (21%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR--------TFQVFLCPNGRKNSPEALKL 62 + D+ET G+D+ D IIEIG +L +S +N T+ P G+ PE K+ Sbjct: 47 IIDLETMGMDATQDEIIEIG---MLSFSFSNEDGILGIKHTYNELNAP-GKPIPPEITKI 102 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDPLD 119 GI +E + K + W+F + E I HNA FD F+ ELQ P D Sbjct: 103 TGIRNEDVIGK-------TINWNFVLQVLKESHLIICHNAGFDRNFL--ELQT----PQD 149 Query: 120 PSRIIDTL 127 + I TL Sbjct: 150 IQKQIITL 157 >gi|160891921|ref|ZP_02072924.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492] gi|270296413|ref|ZP_06202613.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317480391|ref|ZP_07939491.1| exonuclease [Bacteroides sp. 4_1_36] gi|156858399|gb|EDO51830.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492] gi|270273817|gb|EFA19679.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316903469|gb|EFV25323.1| exonuclease [Bacteroides sp. 4_1_36] Length = 256 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 14/118 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + FD+ETTG + +DRI+EI +++ + SKT R P EA +HGI Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTMRINPEMPIP------AEASAVHGI 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122 D + D P+F + + + + + N+ +FD+ + E R D +D SR Sbjct: 64 YDADIADCPTFKEVARNIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVD-IDMSR 118 >gi|315224650|ref|ZP_07866473.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga ochracea F0287] gi|314945278|gb|EFS97304.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga ochracea F0287] Length = 1485 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 19/136 (13%) Query: 10 IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58 ++FD ETTGL DS N R ++I A +L D Q FL P+G + Sbjct: 3 LIFDTETTGLPRRWDAPLSDSDNWPRAVQI-AWQLHDEWGALIEHQDFLIKPDGFDVPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEW-IAHNAKFDVGFINAELQRIN- 114 A K+HGI+ + + + +E + FNE A++ + N FD+ + AE R Sbjct: 62 AEKVHGISTQLAEAQ---GMPIAEVFKAFNEALSKAQYVVGQNIGFDINIMGAEFYRYGV 118 Query: 115 KDPLDPSRIIDTLSIA 130 + PL +IDT + A Sbjct: 119 ESPLTQMPVIDTCTEA 134 >gi|253563502|ref|ZP_04840959.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5] gi|251947278|gb|EES87560.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5] Length = 175 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 26/175 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I F+ T ++S +G V + D T+ + + P L +HGIT Sbjct: 8 IDFETATGYMESA----CAVGIVTVTDGEITDEYYSLIQPPENEYWRANML-VHGITPGM 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F +I+ E Q +AHN +FD + ++ D D LS+ Sbjct: 63 TESLPGFHAIYPEVKKRL--QGNVVVAHNEQFDRNVLKNSMRMYGLD-------YDELSL 113 Query: 130 ARRKHPSSR---------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + R +L++ C+R GI + H H AL D+ + +Y+ + Sbjct: 114 PERWECTCRIYRSLGYKPVNLSACCEREGIELKH---HEALSDARGCAKLYLNFL 165 >gi|309802188|ref|ZP_07696296.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022] gi|308221071|gb|EFO77375.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022] Length = 552 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 11/85 (12%) Query: 94 WIAHNAKFDVGFI------NAELQRINK----DPLDPSRIIDTLSIARRKHPSSRNDLNS 143 ++AHNA+F+ GF AE R D L SR D SI +HP N L S Sbjct: 432 YVAHNARFEHGFFMLNIAGYAESYRAGNITIIDTLPMSRRWDDGSIPDDEHPYGDNTLES 491 Query: 144 LCKRYGITISHRS-KHGALLDSHLL 167 KR G S +S +H L D+H++ Sbjct: 492 YAKRQGALDSSKSERHLGLEDAHIM 516 >gi|170024544|ref|YP_001721049.1| exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis YPIII] gi|186895217|ref|YP_001872329.1| exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis PB1/+] gi|169751078|gb|ACA68596.1| Exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis YPIII] gi|186698243|gb|ACC88872.1| Exonuclease RNase T and DNA polymerase III [Yersinia pseudotuberculosis PB1/+] Length = 217 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGL + + IIEI ++ T + L + EA +HGIT++ Sbjct: 46 LILDTETTGLGN-DAEIIEISIIDC-----TGKILLDTLVKPIKAIPAEATAIHGITNDI 99 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 + D P++ I +F N++ + +NA FD I Sbjct: 100 VADAPTWRDIHWQFMVLTNDRTL--LIYNASFDSRLI 134 >gi|26987095|ref|NP_742520.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440] gi|24981722|gb|AAN65984.1|AE016227_5 exonuclease [Pseudomonas putida KT2440] Length = 236 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 24/178 (13%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEAL 60 + R +V D+ET+GL+ D+++ IGAV + +D+++ RT P + N+ ++ Sbjct: 38 EQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR---PLQKTNA--SV 92 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD- 119 +HG+ L + + DF N+ +A +A FD L R K+ L Sbjct: 93 LIHGLGPSALAAGCDPAEALLDLLDFIG--NSPVLAFHAPFD----QRMLARALKESLGY 146 Query: 120 --PSRIIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S +D +A +P + L+ R+G+ + R H A D+ + +++ + Sbjct: 147 RLQSPFLDIAELAPMLNPDTVLREAGLDDWVARFGLQVEER--HHASADAQVTAELAL 202 >gi|313206803|ref|YP_004045980.1| DNA polymerase iii, epsilon subunit [Riemerella anatipestifer DSM 15868] gi|312446119|gb|ADQ82474.1| DNA polymerase III, epsilon subunit [Riemerella anatipestifer DSM 15868] gi|315023876|gb|EFT36878.1| DNA polymerase III epsilon subunit [Riemerella anatipestifer RA-YM] gi|325335757|gb|ADZ12031.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases [Riemerella anatipestifer RA-GD] Length = 407 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 9/166 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V DIE+ G + + IIE+ A+ D K F + P S KL GIT + + Sbjct: 4 VIDIESNGGAFREECIIEV-AIYRYDGHKIVDQFISMVNPEA-DISHFVQKLTGITPKMV 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K P F I + + + + HN FD + +R+ +DT+ +A Sbjct: 62 KTAPKFHEIAKRIIEI--TEGSTLVGHNVDFDYRMLRQSFKRLGYHF--SIETLDTIPLA 117 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ P+ + L L K GI ++ H A D+ D++ +M Sbjct: 118 KKLIPNEESYSLGKLVKSLGIPLAEH--HRASSDARATLDLFKLLM 161 >gi|262182582|ref|ZP_06042003.1| DNA polymerase III subunit epsilon [Corynebacterium aurimucosum ATCC 700975] Length = 223 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 23/161 (14%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R + FD+ETT + K RI+ A+ +D + ++ + L G + EA K+HG Sbjct: 4 DATRMLSFDLETTSVKPKEARIV-TSALVRIDGREVDK--REMLADPGVEIPEEAAKIHG 60 Query: 65 ITDEFLKD---------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RI 113 IT E + K + SI+ + WD + I +NA +D+ + A + Sbjct: 61 ITTEKARAEGRPHEEVLKETVDSIY-QAWD----EGLTLIVYNAAYDLSVLRALTGDFTV 115 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154 N DP +ID + RK + L + YG+ +S+ Sbjct: 116 NGPVFDPF-VIDRVKDKWRK---GKRTLEEVSAHYGVELSN 152 >gi|126665477|ref|ZP_01736459.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] gi|126630105|gb|EBA00721.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] Length = 245 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 23/176 (13%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ + D ETTGL + II +G V L+ + + + P + ++ +H Sbjct: 51 SQVPMVAIDFETTGLSATEHSIISVGLVPFTLEGIQLSAARHWLVKPKLALHQ-TSVTIH 109 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLDPSR 122 GIT L+ P I E + + + H + F++ L R+ + P Sbjct: 110 GITHADLEQAPDLVDILPELLECLAGRLP--VVHYRDIERPFLDVALRHRLQEGIQFP-- 165 Query: 123 IIDTLSIARRKHPSSRNDLNSLCK--------------RYGITISHRSKHGALLDS 164 ++DT++I HP R + RYG + H + H AL+D+ Sbjct: 166 LLDTMAIEAHLHPDRRPTFWQTWRGKKPLSIRLSDSRLRYG--LPHYAAHNALMDA 219 >gi|218265111|ref|ZP_03478699.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii DSM 18315] gi|218221600|gb|EEC94250.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii DSM 18315] Length = 174 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 9/169 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R D ET + K I IG + +++ +K + + P + +HGIT Sbjct: 3 RFAAIDFETA--NGKRSSICSIG-IAIIEDNKVIDSIYTLVRPYPNFYTRFTTAVHGITM 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P F ++SE Q+ +AHN+ FD G + A + + + T Sbjct: 60 QDTIDSPDFEEVWSEIAG--KLQDIPLVAHNSPFDEGCLRAAHEAYDL-AYPKYQFYCTC 116 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++RR +P N L ++ G +++ H A+ D++ + + MM Sbjct: 117 RLSRRMYPFLVNHQLQTVAAHCGYDLTYH--HHAMADAYACAHIAATMM 163 >gi|110803621|ref|YP_698953.1| DNA polymerase III, epsilon subunit [Clostridium perfringens SM101] gi|110684122|gb|ABG87492.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens SM101] Length = 204 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 7/124 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + FD ETTG+ K I ++ + + +K +T + + PEA ++HG + Sbjct: 1 MKLLFFDTETTGV--KPGSICQLSYILVNTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58 Query: 67 DE---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 E L + F ++++F + F E + I HN +FD+ F+ EL + + +P+ + Sbjct: 59 LEKLYELSEGMYFEDLYADFINDFLEADF-IIGHNVQFDIKFLKHELLGLG-EFFEPNNV 116 Query: 124 IDTL 127 T+ Sbjct: 117 FCTM 120 >gi|238853316|ref|ZP_04643700.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4] gi|300362992|ref|ZP_07059162.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri JV-V03] gi|238834110|gb|EEQ26363.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4] gi|300353042|gb|EFJ68920.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri JV-V03] Length = 320 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL DRI E+G ++ + + + TF ++ P+ K KL+GI + Sbjct: 35 LIDVETTGLSPYRDRITEMGGLK-VRHGEVVATFSELVKFPDNNKVPAFITKLNGIDEAA 93 Query: 70 LKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +++K P +I ++ +F + +N FD+ F+ ++ + L+ + +D Sbjct: 94 IEEKGLPVQEAI-KKYREFIGSDPI--VGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDVY 149 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P R++ C + + I+ +H L D Sbjct: 150 RLARSFYPQERHNRLLDC-MHRMNIAENQEHRGLDDC 185 >gi|227487527|ref|ZP_03917843.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227092509|gb|EEI27821.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 2526 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 6/104 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V +++T+G+ S+ DRIIEIG V K T+ + P R S A +HGI++ Sbjct: 2131 VLNVKTSGI-SERDRIIEIGIVLATLNGKVEGTYTTLINPR-RSFSDSA--IHGISERMT 2186 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P F + + + + + IAH+A F + E R N Sbjct: 2187 VAAPVFEEVADDIAELLDRRI--LIAHDAPFVSKQLGREFSRSN 2228 >gi|46371957|gb|AAS90610.1| conserved hypothetical protein [uncultured soil bacterium] Length = 195 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL D +++IG ++ SK + P R ++HG+T+E Sbjct: 27 VVLDTETTGL-GPTDEVVQIGIID----SKGRTVLNTMVRPT-RPVPSVVTRIHGLTNEK 80 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 L + FS ++ IA+N FD Sbjct: 81 LAEASPFSDLYVSLSSIL--AGVTVIAYNMDFD 111 >gi|198274686|ref|ZP_03207218.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135] gi|198272133|gb|EDY96402.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135] Length = 258 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 7/109 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 + FD+ETTG + DRI+EI +++ Y N + L N + PE + +HGI DE Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKV--YPNGNEEAKT-LRINPEMHIPETSTAIHGIHDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 + D P+F + + + + A+ N+ +FDV + E R D Sbjct: 67 DVADCPTFKEVAKDIAR--DIEGADIAGFNSNRFDVPVLVEEFLRAGID 113 >gi|169342705|ref|ZP_02863746.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens C str. JGS1495] gi|169299211|gb|EDS81281.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens C str. JGS1495] Length = 204 Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 7/124 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + FD ETTG+ K I ++ + + +K +T + + PEA ++HG + Sbjct: 1 MKLLFFDTETTGV--KPGSICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58 Query: 67 DE---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 E L + F ++++F + F E + I HN +FD+ F+ EL + + +P+ + Sbjct: 59 LEKLYELSEGMHFEDLYADFINDFLEADF-IIGHNVQFDIKFLKHELLGLG-EFFEPNNV 116 Query: 124 IDTL 127 T+ Sbjct: 117 FCTM 120 >gi|325171157|ref|YP_004251132.1| hypothetical protein ViPhICP1_gp191 [Vibrio phage ICP1] gi|323512552|gb|ADX88007.1| conserved hypothetical protein [Vibrio phage ICP1] gi|323512778|gb|ADX88232.1| gp35 [Vibrio phage ICP1_2006_D] gi|323513006|gb|ADX88459.1| gp35 [Vibrio phage ICP1_2006_C] gi|323513231|gb|ADX88683.1| hypothetical protein TUST1-159_00915 [Vibrio phage ICP1_2006_B] gi|323513458|gb|ADX88909.1| hypothetical protein TUST1-17_00915 [Vibrio phage ICP1_2006_A] gi|323513689|gb|ADX89139.1| gp35 [Vibrio phage ICP1_2005_A] gi|323513920|gb|ADX89369.1| gp35 [Vibrio phage ICP1_2001_A] gi|323514148|gb|ADX89596.1| hypothetical protein TUST1-10_00920 [Vibrio phage ICP1_2004_A] Length = 337 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 79 IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138 + SE W+ N+ + ++ +FD+ +NA L P P + DTL IA+RK + Sbjct: 143 LLSELWELMNQADIVVGQNHRRFDIKRLNARLIMNGFRPYSPVKTEDTLDIAKRKFGFTS 202 Query: 139 NDLNSLCKRYGITISHRSKHG 159 N L + + + + KHG Sbjct: 203 NKLEWMTDKLCVEFK-KQKHG 222 >gi|256839708|ref|ZP_05545217.1| exonuclease [Parabacteroides sp. D13] gi|256738638|gb|EEU51963.1| exonuclease [Parabacteroides sp. D13] Length = 192 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 39/184 (21%), Positives = 79/184 (42%), Gaps = 21/184 (11%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65 M+ + FD+ETTG+ + + +I ++D T +F +CP+ + EAL++ + Sbjct: 1 MKLLFFDLETTGIKYWRNGVHQISGEIVID-GVTKESFNFNVCPHPQCEIEEEALRICNV 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA---------HNAKFDVGFINAELQRINKD 116 + E ++ P ++ +F + ++ ++ +NA FD F+ A + N D Sbjct: 60 SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQ-NGD 118 Query: 117 PLDPS---------RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 S ++ T + R++H + ++ + GI I H A D L Sbjct: 119 NYFYSWFWVNSIDVMVLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDIQLT 178 Query: 168 SDVY 171 +Y Sbjct: 179 KKIY 182 >gi|167762354|ref|ZP_02434481.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC 43183] gi|167699997|gb|EDS16576.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC 43183] Length = 256 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 6/114 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTG + +DRI+EI +++ Y N + EA +HGI DE Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKV--YPNGNEETKTMRINPEMHIPEEASAVHGIYDED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122 + + P+F + + + + + N+ +FD+ + E R + D +D SR Sbjct: 68 VAECPTFKEVARNIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRADVD-IDMSR 118 >gi|53712466|ref|YP_098458.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46] gi|60680667|ref|YP_210811.1| putative exonuclease [Bacteroides fragilis NCTC 9343] gi|265762628|ref|ZP_06091196.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16] gi|52215331|dbj|BAD47924.1| probable DNA polymerase III epsilon chain [Bacteroides fragilis YCH46] gi|60492101|emb|CAH06864.1| putative exonuclease [Bacteroides fragilis NCTC 9343] gi|263255236|gb|EEZ26582.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16] Length = 175 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 26/175 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I F+ T ++S +G V + D T+ + + P L +HGIT Sbjct: 8 IDFETATGYMESA----CAVGIVTVTDGEITDEYYSLIQPPENEYWRANML-VHGITPGM 62 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F +I+ E Q +AHN +FD + ++ D D LS+ Sbjct: 63 TESLPGFHAIYPEVKKRL--QGNVVVAHNEQFDRNVLKNTMRMYGLD-------YDELSL 113 Query: 130 ARRKHPSSR---------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R + R +L++ C+R GI + H H AL D+ + +Y+ + Sbjct: 114 PERWECTCRIYRSLGYKPVNLSACCEREGIELKH---HEALSDARGCAKLYLNFL 165 >gi|116630207|ref|YP_815379.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri ATCC 33323] gi|282852827|ref|ZP_06262168.1| exonuclease [Lactobacillus gasseri 224-1] gi|116095789|gb|ABJ60941.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus gasseri ATCC 33323] gi|282555935|gb|EFB61556.1| exonuclease [Lactobacillus gasseri 224-1] Length = 320 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL DRI E+G ++ + + + TF ++ P+ K KL+GI + Sbjct: 35 LIDVETTGLSPYRDRITEMGGLK-VRHGEVVATFSELVKFPDSNKVPTFITKLNGIDEAA 93 Query: 70 LKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +++K P +I ++ +F + +N FD+ F+ ++ + L+ + +D Sbjct: 94 IEEKGLPVQEAI-KKYREFIGSDPI--VGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDVY 149 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P R++ C + + I+ +H L D Sbjct: 150 RLARSFYPQERHNRLLDC-MHRMNIAENQEHRGLDDC 185 >gi|226311041|ref|YP_002770935.1| hypothetical protein BBR47_14540 [Brevibacillus brevis NBRC 100599] gi|226093989|dbj|BAH42431.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 113 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 17/114 (14%) Query: 7 MRKIVFDIETTGLD---SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKL 62 M I+FD+E T + +K + IIEIGAV+L + FQ F+ P S KL Sbjct: 1 MNYIIFDLEATCWENDRTKQNEIIEIGAVKLNENLAVIGEFQTFIKPKLNPILSDFCKKL 60 Query: 63 HGITDEFLKDKPSFSSIFSEF------------WDFFNEQNAEWIAHNAKFDVG 104 I+ + + PSF S F W F++++ + I +++K+ +G Sbjct: 61 TSISQKEVDQAPSFGEAISHFQNWIGSEYHLCSWGFYDKKQLK-IKYSSKYLIG 113 >gi|308049484|ref|YP_003913050.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] gi|307631674|gb|ADN75976.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica DSM 9799] Length = 249 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 11/186 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTG++ D II IG V + ++ R + E++ +HGIT Sbjct: 60 VALDFETTGMNPDQDAIISIGLVPFTQQRIQCKGSAHWIVNPNRPLNEESVVIHGITHSD 119 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128 L+ P + + D + + H + + F++ L+ R+ + P ++DTL Sbjct: 120 LEQAPDLEVVLDQVLDALAGKIV--VVHYKQIEREFLDRALRARLGEGIRFP--VVDTLD 175 Query: 129 I-ARRKHPSSRNDLNSLCKRYGITI---SHRSKHG--ALLDSHLLSDVYIKMMVGGSQIN 182 I A +H + + N L + ++ R ++G A H L+D + +Q+ Sbjct: 176 IEAAIQHRACQGWFNRLRGKKPDSVRLGRARERYGLPAYQPHHALTDALATAELLQAQLA 235 Query: 183 FGFKTN 188 + F + Sbjct: 236 WHFSPD 241 >gi|18310648|ref|NP_562582.1| hypothetical protein CPE1666 [Clostridium perfringens str. 13] gi|110800096|ref|YP_696353.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens ATCC 13124] gi|168211446|ref|ZP_02637071.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens B str. ATCC 3626] gi|168214501|ref|ZP_02640126.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens CPE str. F4969] gi|168216953|ref|ZP_02642578.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens NCTC 8239] gi|182626374|ref|ZP_02954128.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens D str. JGS1721] gi|18145329|dbj|BAB81372.1| hypothetical protein [Clostridium perfringens str. 13] gi|110674743|gb|ABG83730.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens ATCC 13124] gi|170710592|gb|EDT22774.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens B str. ATCC 3626] gi|170714024|gb|EDT26206.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens CPE str. F4969] gi|177908325|gb|EDT70873.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens D str. JGS1721] gi|182380871|gb|EDT78350.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens NCTC 8239] Length = 204 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 7/124 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + FD ETTG+ K I ++ + + +K +T + + PEA ++HG + Sbjct: 1 MKLLFFDTETTGV--KPGSICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58 Query: 67 DE---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 E L + F ++++F + F E + I HN +FD+ F+ EL + + +P+ + Sbjct: 59 LEKLYELSEGMYFEDLYADFINDFLEADF-IIGHNVQFDIKFLKHELLGLG-EFFEPNNV 116 Query: 124 IDTL 127 T+ Sbjct: 117 FCTM 120 >gi|77408519|ref|ZP_00785256.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae COH1] gi|77172876|gb|EAO76008.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae COH1] Length = 835 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L P F + + ++ ++AHN KFD + +L + P Sbjct: 73 LTGITDKQLVKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGFELRTPR 130 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +++ +P + L +L + I ++ H A+ D+ + ++IK+ Sbjct: 131 --IDTVELSQVFYPCLEKYSLGALAESLNIELT--DAHTAIADARATAQLFIKL 180 >gi|237746008|ref|ZP_04576488.1| exonuclease [Oxalobacter formigenes HOxBLS] gi|229377359|gb|EEO27450.1| exonuclease [Oxalobacter formigenes HOxBLS] Length = 305 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 12/104 (11%) Query: 10 IVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNR---TFQVFLCP---NGRKNSPEALKL 62 IVF D ETTGL S+ D IIE+G V +S + + + L G+ SP +L Sbjct: 56 IVFLDTETTGLSSETDVIIELGLVR-ASFSPSKKKLVSLDAILSAYEDPGKPLSPFITEL 114 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 GITDE ++ + I + F E A +AHNA FD F Sbjct: 115 TGITDEKVRGQ----RIDEKTVAGFLENAALIVAHNAAFDRPFF 154 >gi|51244817|ref|YP_064701.1| DNA polymerase III subunit epsilon [Desulfotalea psychrophila LSv54] gi|50875854|emb|CAG35694.1| probable DNA polymerase III, epsilon chain [Desulfotalea psychrophila LSv54] Length = 239 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 23/171 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD + D I+ IG + + + ++ +++ +HGIT Sbjct: 50 VALDFETTGLDLQKDGILSIGLIPFDTHRIYCKKAAYWVINPHSPLGEDSVIIHGITHSD 109 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P ++ E NE + + H + + F++ L + + + +IDT+ Sbjct: 110 INNAPGLGKVWQE---VLNELAGKIVVVHYREIERKFLDKALHELLGEGIA-FPVIDTMQ 165 Query: 129 IA---------------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 I + +HP S NS RYG + H H AL D+ Sbjct: 166 IESIIQQKKRGGLWNWLKGRHPESIRLANSRS-RYG--LPHYQVHHALTDA 213 >gi|330985867|gb|EGH83970.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315] Length = 237 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +V D+ET+GL+ D+++ IGAV + D + + F+ L K SP L +HG Sbjct: 40 QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVL-IHG 98 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + + + +F +F E + + +A FD ++ L+ Sbjct: 99 LAPSAIAAGCEPAEALLDFMEFVGE--SPILGFHAPFDQHMLSRALK 143 >gi|227875110|ref|ZP_03993255.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35243] gi|227844388|gb|EEJ54552.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35243] Length = 258 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 18/177 (10%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTG+ + DR I L+ T ++ G +A +++G+TDE+L+ Sbjct: 37 FDTETTGVWVRRDR---IATASLIRRVGGEDTAYNWVINPGVPMPVKASEVNGLTDEYLE 93 Query: 72 ---DKP--SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP------ 120 ++P + + I SE + + N FD + AEL R L Sbjct: 94 KHGEQPAVALAEIASELAAAMS-SGVPVVGFNVAFDFEILEAELARYELPTLRARLGGRI 152 Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +ID L + R ++ + L ++C+ YG+ +R+ H A D D+ M+ Sbjct: 153 APVIDPLVLDRTLDRYRRGKRKLATVCEAYGLD-GNRAFHQADSDVTATLDLLGAMI 208 >gi|269977856|ref|ZP_06184812.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] gi|306818377|ref|ZP_07452103.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307701469|ref|ZP_07638488.1| exonuclease [Mobiluncus mulieris FB024-16] gi|269933936|gb|EEZ90514.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1] gi|304648886|gb|EFM46185.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307613379|gb|EFN92629.1| exonuclease [Mobiluncus mulieris FB024-16] Length = 258 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 18/162 (11%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD ETTG+ + DR I L+ T ++ G +A +++G+TDE+L+ Sbjct: 37 FDTETTGVWVRRDR---IATASLIRRVGGEDTAYNWVINPGVPMPVKASEVNGLTDEYLE 93 Query: 72 ---DKP--SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP------ 120 ++P + + I SE + + N FD + AEL R L Sbjct: 94 KHGEQPAVALAEIASELAAAMS-SGVPVVGFNVAFDFEILEAELARYELPTLRARLGGRI 152 Query: 121 SRIIDTLSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGA 160 + +ID L + R ++ + L ++C+ YG+ +R+ H A Sbjct: 153 APVIDPLVLDRTLDRYRRGKRKLATVCEAYGLD-GNRAFHQA 193 >gi|330721640|gb|EGG99654.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC2047] Length = 224 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 12/126 (9%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEAL 60 +++ +V D+ETT LD+ N ++ IG V + + + F G ++ Sbjct: 37 DQLEFLVVDLETTSLDADNGEVVSIGWVPVKSGSIQLADAEHHFSKVDAGVG-----QSA 91 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +H I D L D S ++I + F + H+A+ D+ F+N +++ PL Sbjct: 92 VIHHIRDSELHDAASVTAIMNRF--LAVAAGKVLVFHHAELDMAFLNRLSKKLYSVPL-L 148 Query: 121 SRIIDT 126 + I+DT Sbjct: 149 APIVDT 154 >gi|228477577|ref|ZP_04062210.1| DnaQ family exonuclease/DinG family helicase [Streptococcus salivarius SK126] gi|228250721|gb|EEK09919.1| DnaQ family exonuclease/DinG family helicase [Streptococcus salivarius SK126] Length = 828 Score = 38.9 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M KN + + D+E T S II++G V ++ + F + P+ + + Sbjct: 1 MSEKNTNKYAIVDLEATSASSTAS-IIQVGIV-IMQNGQVIDEFASDVNPHQELDD-HII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ ++ ++AHN KFD + AE + L Sbjct: 58 HLTGITDQQLAQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLL-AEALFMEGFELRT 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +DT+ +A+ +P+ + L+ L K + ++ H A+ D+ + +M Sbjct: 115 PR-VDTVELAQVFYPTLEQYKLSHLSKVLNLDLAQ--AHTAIEDARATGQLLFHLM 167 >gi|54309681|ref|YP_130701.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9] gi|46914119|emb|CAG20899.1| putative DNA polymerase III, epsilon subunit [Photobacterium profundum SS9] Length = 239 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 23/171 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL++K D II IG V L+ NR + P + N +++ +H IT Sbjct: 50 VAMDFETTGLNAKKDGIITIGLVPFTLNRVYINRAQHWTVRPRQKLNE-QSVVIHNITHN 108 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P S + + + H + + F++ L+ K+ ++ +IDTL Sbjct: 109 DILDAPDLSEVIEPVLAALAGRVV--VVHYRRIEREFLDRALKARIKEGIE-FPVIDTLE 165 Query: 129 IARR---------------KHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + + K P S L KRYG+ + H AL D+ Sbjct: 166 LEAQIQQRLNGGFWNKLKGKKPQSVR-LAQARKRYGLPAY--TPHHALTDA 213 >gi|332662172|ref|YP_004444960.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter hydrossis DSM 1100] gi|332330986|gb|AEE48087.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter hydrossis DSM 1100] Length = 194 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 13/123 (10%) Query: 10 IVFDIETTGLD----------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 + D ETTGL + R++++ + + + P G Sbjct: 3 LFLDTETTGLPLNWSAPISRVNNWPRMVQLAGLLYDEEGTLLEQLNYLVRPEGYTIPAAV 62 Query: 60 LKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDP 117 +++HGIT E L + + + ++F E++ +AHN FD + AE R + +DP Sbjct: 63 VRIHGITTERALAEGVPVAQVLNDFRSIL-EKSKLLVAHNVNFDHAIVGAEYHRYVKEDP 121 Query: 118 LDP 120 L P Sbjct: 122 LLP 124 >gi|322516980|ref|ZP_08069870.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus vestibularis ATCC 49124] gi|322124463|gb|EFX95958.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus vestibularis ATCC 49124] Length = 828 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M KN + + D+E T S II++G V ++ F + P+ + + Sbjct: 1 MSEKNTNKYAIVDLEATS-ASSTACIIQVGIV-IMQNGLVIDEFASDVNPHQELDD-HIV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ ++ ++AHN KFD + AE + L Sbjct: 58 HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLL-AEALFMEGFELRT 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +DT+ +A+ +P+ + L+ L + + ++ H A+ D+ + +M Sbjct: 115 PR-VDTVELAQVFYPTLEQYKLSYLSQVLNLDLAQ--AHTAIEDARATGQLLFHLM 167 >gi|294791066|ref|ZP_06756224.1| DNA polymerase III, epsilon subunit [Scardovia inopinata F0304] gi|294458963|gb|EFG27316.1| DNA polymerase III, epsilon subunit [Scardovia inopinata F0304] Length = 282 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 9/114 (7%) Query: 12 FDIETTGLDSKNDRIIEIGAV---ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 FD ETTG + D I+ V L ++ + Q ++ G +P A +++G TD+ Sbjct: 29 FDTETTGTRAGKDAIVSASLVLRNPALGFN--GDSTQDWIINPGIPMNPRASQVNGFTDD 86 Query: 69 FLKDKPS--FSSIFSEFWDFFNEQ--NAEWIAHNAKFDVGFINAELQRINKDPL 118 +L++ + SI Q N +A+NA FD+ +N +LQ++ ++ L Sbjct: 87 YLREHGANQADSIALIANSIIKAQIRNIPLLAYNAPFDITMLNGDLQKLGQETL 140 >gi|268316050|ref|YP_003289769.1| Exonuclease RNase T and DNA polymerase III [Rhodothermus marinus DSM 4252] gi|262333584|gb|ACY47381.1| Exonuclease RNase T and DNA polymerase III [Rhodothermus marinus DSM 4252] Length = 167 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 30/167 (17%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ET+GL + DR I + LL + E L L T Sbjct: 9 LFFDVETSGL--RPDRGAAIVELALL-------------------GAREPLLLWKGTSAQ 47 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + F +F+ + + + HN +FD F+ E R+ + P R IDTL + Sbjct: 48 RLQRAQFRELFA------HVREGVIVGHNLRFDFWFVTYEAGRLGLA-VPPIRFIDTLGL 100 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR P + L +L GI + H A+ D+ ++ K++ Sbjct: 101 ARRLLPEQADYRLVALLHALGIE-PDKPLHTAVADAQATRALFWKLV 146 >gi|319744611|gb|EFV96961.1| DNA polymerase III [Streptococcus agalactiae ATCC 13813] Length = 821 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L P F + + ++ ++AHN KFD + +L + P Sbjct: 59 LTGITDKQLVKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGFELRTPR 116 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +++ +P + L +L + I ++ H A+ D+ + ++IK+ Sbjct: 117 --IDTVELSQVFYPCLEKYSLGALAESLNIELT--DAHTAIADARATAQLFIKL 166 >gi|127510985|ref|YP_001092182.1| DNA polymerase III subunit epsilon [Shewanella loihica PV-4] gi|126636280|gb|ABO21923.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica PV-4] Length = 239 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 15/133 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+ D I+ IG V L NR + P + + E++ +HGIT Sbjct: 50 LAMDFETTGLNVDKDDIVSIGTVPFTLRRIFLNRAQHWTVRPR-EQLAEESVIIHGITHS 108 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAE--WIAHNAKFDVGFIN-AELQRINKDPLDPSRIID 125 + D P S+IF + EQ A + H + F+ A ++RI++ P +ID Sbjct: 109 DILDAPDLSAIFEQVL----EQMAGKIMVVHYQAIERLFLERALIRRIHQGIEFP--LID 162 Query: 126 TLS----IARRKH 134 T++ I +R+H Sbjct: 163 TMALESEIQKRQH 175 >gi|12698423|gb|AAK01537.1| DNA polymerase III [Pseudomonas aeruginosa] Length = 204 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 19/130 (14%) Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKD 116 +A ++HGI + +K P + + D + +W +AHNA D E+ + + Sbjct: 58 QAKRVHGIGNSSVKGSPVWEELRG---DVEQQLQGKWFVAHNASIDY-----EVMKRHLP 109 Query: 117 PLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGI--TIS---HR----SKHGALLDSHL 166 P +IDTL +AR +P + + L++L G+ +S HR ++ ALL S L Sbjct: 110 DWAPVGVIDTLKLARHVYPDAESHSLSALLAMTGLDSEVSGELHRAGEDARVTALLLSRL 169 Query: 167 LSDVYIKMMV 176 L D IK + Sbjct: 170 LKDSLIKSWI 179 >gi|312863243|ref|ZP_07723481.1| putative ATP-dependent DNA helicase DinG [Streptococcus vestibularis F0396] gi|311100779|gb|EFQ58984.1| putative ATP-dependent DNA helicase DinG [Streptococcus vestibularis F0396] Length = 839 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M KN + + D+E T S II++G V ++ F + P+ + + Sbjct: 12 MSEKNTNKYAIVDLEATS-ASSTACIIQVGIV-IMQNGLVIDEFASDVNPHQELDD-HIV 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ ++ ++AHN KFD + AE + L Sbjct: 69 HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLL-AEALFMEGFELRT 125 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +DT+ +A+ +P+ + L+ L + + ++ H A+ D+ + +M Sbjct: 126 PR-VDTVELAQVFYPTLEQYKLSYLSQVLNLDLAQ--AHTAIEDARATGQLLFHLM 178 >gi|305682188|ref|ZP_07404992.1| exonuclease [Corynebacterium matruchotii ATCC 14266] gi|305658661|gb|EFM48164.1| exonuclease [Corynebacterium matruchotii ATCC 14266] Length = 230 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 23/169 (13%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N ++ + FD+ETT + RI+ V + Q FL G A K+HG Sbjct: 9 NPLKVLSFDLETTSANPFEARIVTSALVHI---DSGGAHPQEFLADPGVPIPEAATKVHG 65 Query: 65 ITDEFLKDKPS---------FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRIN 114 IT E+ ++ S ++I + D + I +NA +D+ +++ E + Sbjct: 66 ITTEYAREHGSPHADVLAETIAAIRKAWTDGYT-----LIVYNASYDLTVLHSLEPGFLI 120 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGAL 161 P+ ++D L R+ + L +LC+ Y + + +H + AL Sbjct: 121 TGPVYDPYVMDKLLDPYRR---GKRTLTALCEEYQVRLENAHEATSDAL 166 >gi|114776398|ref|ZP_01451443.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans PV-1] gi|114553228|gb|EAU55626.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans PV-1] Length = 310 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 9/98 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-----KLHG 64 +V D ETTGLD+ D IIE+G V + + R ++V +G ++ L +L G Sbjct: 40 LVIDTETTGLDTTADTIIELGFVAFSYDAGSGRIYEVLHNYDGFEDPGAPLSDVVKQLTG 99 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 I+D + + E W ++ IAHNA FD Sbjct: 100 ISDAMVAGQ-RLDDAEIETW---LKKADLLIAHNAAFD 133 >gi|149020300|ref|ZP_01835192.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae SP23-BS72] gi|147930602|gb|EDK81584.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae SP23-BS72] Length = 308 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 11/167 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D+ET +S + IG V+ +D + + +F + P K S +K+H I E Sbjct: 6 IALDVETA--NSFRGSLCSIGLVKFIDGQEVD-SFYTLINPE-EKFSSRNIKIHAIKPED 61 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+F + E +F + N +AHNA+FD + ++ + P D + + + Sbjct: 62 VIGAPTFPEVQKEIINFID--NLPIVAHNARFD-AYALQDVYLKYEIPFDNIQYFCSYQV 118 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + N L++L + + I++ H H AL D+ + ++++ Sbjct: 119 CKIILTDLPNHKLHTLAEHFKISLDH---HNALSDARACGLILLEIL 162 >gi|1794167|dbj|BAA11217.1| unnamed protein product [Vibrio parahaemolyticus] Length = 234 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 15/188 (7%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 ++ +V D ETTG + + DR+I IG VE+ + + + N VF+ + E++K+H Sbjct: 45 ELDTLVLDFETTGFNPEVDRVISIGWVEIRNSNIRLNSARHVFI-NHAIDICHESVKVHH 103 Query: 65 ITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I E L S + F++ D +AH + F+ ++ ++ P Sbjct: 104 IRPETLHVSGISEQAAFTQLLDVI--AGKILVAHGCIMEQRFLEQYIKMKYQNLKLPLIW 161 Query: 124 IDTLSIA--RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +DTL I R + +R+D R + + H AL D+ +++Y+ +QI Sbjct: 162 LDTLKIEQYRTQLRPTRSDWRLSSIRKELNLPTYQAHNALNDAIATAELYL------AQI 215 Query: 182 N--FGFKT 187 N FG + Sbjct: 216 NCLFGLSS 223 >gi|256819216|ref|YP_003140495.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271] gi|256580799|gb|ACU91934.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271] Length = 1485 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 19/136 (13%) Query: 10 IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58 ++FD ETTGL DS N R ++I A +L D Q FL P+G + Sbjct: 3 LIFDTETTGLPRRWDAPLTDSDNWPRAVQI-AWQLHDEWGALIEHQDFLIKPDGFDVPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEW-IAHNAKFDVGFINAELQRIN- 114 A K+HGI+ + + + +E + FNE A++ + N FD+ + AE R Sbjct: 62 AEKVHGISTQLAEAQ---GLPIAEVFKAFNEALSKAQYVVGQNIGFDINIMGAEFYRYGV 118 Query: 115 KDPLDPSRIIDTLSIA 130 + PL +IDT + A Sbjct: 119 ESPLTQMPVIDTCTEA 134 >gi|293374981|ref|ZP_06621276.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909] gi|325843349|ref|ZP_08167932.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1] gi|292646391|gb|EFF64406.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909] gi|325489378|gb|EGC91751.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1] Length = 306 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 13/148 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ---VFLCPNGRKNSPEALKLH 63 M I D ET + K D IG L K N+ + + PN + +P + +H Sbjct: 1 MNFIAIDFETA--NEKRDSACSIG----LTVVKNNQIIEQKYYLIKPNELRFAPINISIH 54 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI +K+ +F ++ E +F N +AHNA FD+ + L + P R Sbjct: 55 GIRASDVKNAKTFDQLWPELLPYFT--NNIIMAHNAAFDLSVLRHTLDAYH-IPYPNCRY 111 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGI 150 T+ ++R P N LN++ G+ Sbjct: 112 GCTMILSRNFFPHLENAKLNTVNHHLGL 139 >gi|159903267|ref|YP_001550611.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9211] gi|159888443|gb|ABX08657.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus marinus str. MIT 9211] Length = 245 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 10/163 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGLDS D+ +EIGA+ +++ FL P +NS E+ ++ I E Sbjct: 24 LILDTETTGLDSDKDQCLEIGAILFHVKTRSVLAQNSFLLPVD-ENSAES--INRIPAEI 80 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-VGFINAELQRINKDPLDPSRIIDTLS 128 + + F + + A +AHN FD F + L ++ K P S ++ +S Sbjct: 81 TRIFQPWEMGMKYFEELVDCAEAV-VAHNVAFDKQWFGSPPLPKLIK-PWICS--MEDIS 136 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 SR + L Y I + S H AL D L++V+ Sbjct: 137 WPSHLQLRSRPSVRDLALAYEIPV--WSAHRALTDCIYLAEVF 177 >gi|158317483|ref|YP_001509991.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec] gi|158112888|gb|ABW15085.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec] Length = 237 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 14/163 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDEF 69 V D ETTG D + DR +++ +++ N+ Q+ + + PE A ++HGIT E Sbjct: 10 VLDFETTGTDVETDRAVQVALLKVGPTGVLNQLCQII---DPGVDVPEAAARIHGITTER 66 Query: 70 L----KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 +D + + + N+ FD+ ++ EL+R + L + + Sbjct: 67 ARREGRDPAEVLGRVGQALEGVWRDGIPVVIMNSSFDLTLLDRELRRHHGRSLAEADMLV 126 Query: 124 IDTLSIARRKHP--SSRNDLNSLCKRYGITISHRSKHGALLDS 164 +D + I R P + L +L Y + H AL D Sbjct: 127 LDPMVIDRELDPRRPGKRTLTALATHY--RVRQEGAHDALADC 167 >gi|114562985|ref|YP_750498.1| DNA polymerase III subunit epsilon [Shewanella frigidimarina NCIMB 400] gi|114334278|gb|ABI71660.1| Exonuclease, RNase T and DNA polymerase III [Shewanella frigidimarina NCIMB 400] Length = 238 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 16/73 (21%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK---NSPEALK----- 61 + D ETTGLDS+ + II IG V T Q C +K N + L+ Sbjct: 49 VALDFETTGLDSQKNSIISIGLVPF--------TLQRIFCRKAKKWYLNPKDKLQEDSII 100 Query: 62 LHGITDEFLKDKP 74 +HGIT L+D P Sbjct: 101 IHGITHSDLQDAP 113 >gi|213963506|ref|ZP_03391759.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga sputigena Capno] gi|213953786|gb|EEB65115.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga sputigena Capno] Length = 1485 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 19/134 (14%) Query: 10 IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58 ++FD ETTGL DS N R ++I A +L D Q FL P+G + Sbjct: 3 LIFDTETTGLPRRWDAPLTDSDNWPRAVQI-AWQLHDEWGALIEHQDFLIKPDGFDVPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNE--QNAEW-IAHNAKFDVGFINAELQRIN- 114 A K+HGI+ + + + +E + FNE A++ + N FD+ + AE R Sbjct: 62 AEKVHGISTQLAETQ---GVPIAEVFKAFNEALSKAKYVVGQNIGFDINIMGAEFHRYGV 118 Query: 115 KDPLDPSRIIDTLS 128 + PL +IDT + Sbjct: 119 ESPLTQMPVIDTCT 132 >gi|258647163|ref|ZP_05734632.1| exonuclease [Prevotella tannerae ATCC 51259] gi|260853133|gb|EEX73002.1| exonuclease [Prevotella tannerae ATCC 51259] Length = 163 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HG+ ++ P FS +++E + +AHN +FD G + A Q D D Sbjct: 53 RIHGLRQSDTENAPVFSKVWTEIAPLI--EGLPLVAHNCRFDQGCLKAVFQVYQMDYPDY 110 Query: 121 SRIIDTLSIARRKHPSSRN 139 + +DTL+ AR P N Sbjct: 111 T-FLDTLTAARHALPHLDN 128 >gi|58337027|ref|YP_193612.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM] gi|227903590|ref|ZP_04021395.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796] gi|58254344|gb|AAV42581.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM] gi|227868477|gb|EEJ75898.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796] Length = 177 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++H IT E +K+ P+ + ++ + + + AHN++FD + L R N + + Sbjct: 50 IQVHQITAEDVKNAPTMAEVWPKIKGLY-QPGMLVAAHNSRFDTNVMRQSLARYNIE--E 106 Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +IDTL+ ++ P N L+++ + + H H AL DS + + I Sbjct: 107 PHYLVIDTLATSKLFEPELPNHKLDTVSDALNVELWHH--HNALSDSEACAGILI 159 >gi|300858286|ref|YP_003783269.1| hypothetical protein cpfrc_00868 [Corynebacterium pseudotuberculosis FRC41] gi|300685740|gb|ADK28662.1| hypothetical protein cpfrc_00868 [Corynebacterium pseudotuberculosis FRC41] gi|302206006|gb|ADL10348.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis C231] gi|302330559|gb|ADL20753.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis 1002] gi|308276241|gb|ADO26140.1| DNA polymerase III subunit epsilon [Corynebacterium pseudotuberculosis I19] Length = 232 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 25/175 (14%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + ++ + FD+ETT + RI+ V + R L G + EA K+HG Sbjct: 12 DPLKVLSFDLETTSANPHEARIVSSALVRIDSNGAHPREL---LADPGIEIPEEAAKVHG 68 Query: 65 ITDEFLKD---------KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 IT E+ ++ K + ++I + D F I +NA +D+ L+++ Sbjct: 69 ITTEYAREHGRPHEEVLKETIAAIQQAWADGFT-----LIVYNAAYDLTV----LRKLTG 119 Query: 116 DPLDPSRIIDTLSI--ARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHL 166 D + + D I A K + L LC+ Y + + +H + AL + + Sbjct: 120 DFVVTGPVFDPYVIDKALDKFRRGKRTLTDLCQHYNVRLDNAHEATSDALAAARI 174 >gi|170724006|ref|YP_001751694.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida W619] gi|169762009|gb|ACA75325.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida W619] Length = 236 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 18/173 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEALKL 62 R +V D+ET+GL+ D+++ IGAV + +D+S+ RT P + N+ ++ + Sbjct: 40 RWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFSQQFERTLH---RPAQKTNA--SVLI 94 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HG+ L + E +F + +A +A FD + L+ L Sbjct: 95 HGLGPSALAAGSDPAEALLELLEFIGDSPV--LAFHAPFDQRMLARALKETLGHRLQ-LP 151 Query: 123 IIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +D +A +P + L+ R+G+ + R H A D+ + +++ + Sbjct: 152 FLDVAELAPMLNPDTVLREAGLDDWVARFGLQVDER--HHASADAQVTAELAL 202 >gi|90408436|ref|ZP_01216597.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3] gi|90310470|gb|EAS38594.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3] Length = 237 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 10/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL +K + II IG VE+ + + + N +K + E ++ I + Sbjct: 51 LVVDFETTGLIAKYNDIISIGWVEISNLQVVCASQEHIYINNDKKINHETAVINHIVPQM 110 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ S + + + H + F++ + + P P IDTL I Sbjct: 111 LRQGVSLHDAINAL--LIKAKGKILVVHGKVIEQCFLDFYMHQYFALPKIPLLWIDTLLI 168 Query: 130 ARRKHP------SSRNDLNSLCKRYGITISHRSKHGALLDS 164 + + + N L S RY + + H AL+DS Sbjct: 169 EKWRAVQKGMTLAQDNRLGSARIRYN--LPQYTAHNALIDS 207 >gi|282880255|ref|ZP_06288971.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1] gi|281305850|gb|EFA97894.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1] Length = 905 Score = 38.5 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 20/167 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL+ D I++I AV + F VF+ N + P L G D Sbjct: 523 VVFDTETTGLNVFEDDIVQIAAVRMRQGCVVPGSEFVVFMRTN--REIPRKL---GNIDN 577 Query: 69 FLKDKPSFSSIF--SEFWDFFNEQ--NAEWIAHNAKFDVGFINAELQRINKDPLDPSRI- 123 L ++ ++ SE F E N+ + HNA +D +N LQR D R Sbjct: 578 PLIEEIQHHQLYSPSEGLKMFLEYVGNSRLLGHNADYDYHILNFNLQRYLPDIQLEERCN 637 Query: 124 --IDTLSIARRKHPSSRNDLNSLCKRYGITISH---RSKHGALLDSH 165 D+L + R P +L +Y +++ H ++ H A D H Sbjct: 638 MYFDSLKLIRLLEP----NLKEYKLKYLLSVLHLEGQNSHLADADVH 680 >gi|297802094|ref|XP_002868931.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297314767|gb|EFH45190.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 227 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 6/97 (6%) Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSR 122 GIT + + PSF + + + N + W HN + FD I I K +PS Sbjct: 69 GITRAKVTNAPSFEDVAEKIYGLLNGRI--WAGHNIRRFDCIRIKEAFAEIGKAAPEPSG 126 Query: 123 IIDTLSIARRKHPSSRNDLN--SLCKRYGITIS-HRS 156 IID+L + K ++ SL +G+ + HRS Sbjct: 127 IIDSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRS 163 >gi|15240840|ref|NP_196388.1| exonuclease family protein [Arabidopsis thaliana] gi|9759593|dbj|BAB11450.1| exonuclease-like protein [Arabidopsis thaliana] gi|332003813|gb|AED91196.1| exonuclease family protein [Arabidopsis thaliana] Length = 468 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 11/153 (7%) Query: 12 FDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNGRK-NSPEALKLHGITD 67 FD+ETT + + R I+E G++ + T R++ + P S +++ +GI Sbjct: 12 FDVETT-VPKRGQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRCNGIKR 70 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126 + + P F+ I +D + + W HN +FD I I + P +P ID+ Sbjct: 71 DDVVLAPLFADIADTVYDILHGRI--WAGHNILRFDCARIREAFAEIGRQPPEPKGAIDS 128 Query: 127 LSIARRKHPSSRNDLN--SLCKRYGI-TISHRS 156 L + +K D+ +L + +G+ +HRS Sbjct: 129 LGLLTQKFGRRAGDMKMATLARYFGLGNQTHRS 161 >gi|149377478|ref|ZP_01895220.1| exonuclease [Marinobacter algicola DG893] gi|149358245|gb|EDM46725.1| exonuclease [Marinobacter algicola DG893] Length = 236 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 16/180 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPE 58 R + R IV D+ETTGL+ D +I IGAV + +D S F + L + E Sbjct: 35 RLSDCRLIVLDLETTGLNPAKDNVIAIGAVAIRHNAIDLSD---QFDLIL-RRPELDISE 90 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + +HGI E L ++ N +A+++ FD F+ L++ Sbjct: 91 TVLIHGIGPEALTQGHETEDALLHLLEWMNGDPI--LAYHSAFDQKFLEKALKQ-TLGYT 147 Query: 119 DPSRIIDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P +D + +P+S+ L++ + + +S ++H A D+ + +++ + ++ Sbjct: 148 QPHTWLDVAEMLPAYYPNSKTGGKGLDNWADFFDLEVS--ARHHAAADAMVTAELTLAVI 205 >gi|154504776|ref|ZP_02041514.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149] gi|153794950|gb|EDN77370.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149] Length = 300 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + IV+D+ETTG++ D + + ++L + F+ + P K+ P+A +HGIT Sbjct: 133 KGIVYDLETTGVNPWKDEPLSMCIMDL----QGKVIFEHYFRPEHTKSWPDAAAIHGITP 188 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 E + ++ S + F+ + + FD F+ A Sbjct: 189 EKVANESPMSFYRDQIQKIFDASDILITYNGINFDDSFLEA 229 >gi|302877146|ref|YP_003845779.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] gi|307687841|ref|ZP_07630287.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] gi|302580003|gb|ADL54015.1| Exonuclease RNase T and DNA polymerase III [Clostridium cellulovorans 743B] Length = 205 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I FD ETTGL K +I ++ +++ +K + + P A +HG + Sbjct: 1 MNMIFFDTETTGL--KPGQICQLSYIKVTTDTKPQKVEGKNFFFSVEDIEPSAEAIHGFS 58 Query: 67 DE---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 E L D FS ++ EF + F + + I +N FD+ F+ AE R+ Sbjct: 59 VEDLIELSDGCEFSDLYEEFINDFVDCDL-VIGYNVNFDIKFLVAEFYRLG 108 >gi|317052331|ref|YP_004113447.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] gi|316947415|gb|ADU66891.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] Length = 166 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 12/118 (10%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRINKDP 117 +HG+T + P +F E W +AHN FD+ + L+ Sbjct: 53 AVHGLTAADVAGAP----VFGELWPEIAADIVSAPLLVAHNTSFDMSVLQHCLRSSGIAA 108 Query: 118 LDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P + + +A++ P N LN+LCK +GI ++H H AL D+ + + +++ Sbjct: 109 NIPDAVC-SCRMAKKLLPQLVNHKLNTLCKHFGIPLNH---HDALSDAQAAARIILEL 162 >gi|126342238|ref|XP_001368108.1| PREDICTED: similar to 3-5 exonuclease TREX2 [Monodelphis domestica] Length = 241 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 22/143 (15%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS------KTNRTFQ---------VFLCPNGRK 54 + D+E TGL + + I EI + +S + T Q + +CP + Sbjct: 11 VFLDLEATGLPNAHPEIAEISLFAIHRFSLEHPERDESGTLQLPRVLDKLTLCMCPE-QN 69 Query: 55 NSPEALKLHGITDEFLKD--KPSF-SSIFSEFWDFFNEQNAE--WIAHNA-KFDVGFINA 108 +P+A ++ G++++ L D K F ++ +F Q + +AHN +D + Sbjct: 70 FTPKASEITGLSNQNLADNHKAGFNGAVIRALREFLKRQKSPICLVAHNGFDYDFPLLRT 129 Query: 109 ELQRINKDPLDPSRIIDTLSIAR 131 ELQR+ D + +DTL R Sbjct: 130 ELQRLGADLPGGTVCLDTLPALR 152 >gi|220926351|ref|YP_002501653.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] gi|219950958|gb|ACL61350.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium nodulans ORS 2060] Length = 296 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 10/98 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHG 64 ++ D ETTGLD D +IE+G + Y + R +V L R E +L G Sbjct: 42 LILDTETTGLDPAADEVIELGIIAFT-YGPSGRIHRVRHRFNQLQQPARPIPEEVTRLTG 100 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 ITD + + I + + IAHNA+FD Sbjct: 101 ITDADVAGR----RIDDRAVEALAARARVVIAHNARFD 134 >gi|167031397|ref|YP_001666628.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1] gi|166857885|gb|ABY96292.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1] Length = 236 Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust. Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 18/175 (10%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT-NRTFQVFLCPNGRKNSPEAL 60 + R +V D+ET+GL+ D+++ IGAV + +D+++ RT P + N+ ++ Sbjct: 38 EQRWVVLDLETSGLNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHR---PLQKTNA--SV 92 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HG+ L + + DF + +A +A FD + L+ L Sbjct: 93 LIHGLGPSALAAGCDPAEALLDLLDFMGDSPV--LAFHAPFDQRMLARALKESLGHRLQ- 149 Query: 121 SRIIDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S +D +A +P + L+ R+G+ + R H A D+ + +++ + Sbjct: 150 SVFLDVAELAPMLNPDTVLREAGLDDWVARFGLQVEER--HHASADAQVTAELAL 202 >gi|187777769|ref|ZP_02994242.1| hypothetical protein CLOSPO_01361 [Clostridium sporogenes ATCC 15579] gi|187774697|gb|EDU38499.1| hypothetical protein CLOSPO_01361 [Clostridium sporogenes ATCC 15579] Length = 286 Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 19/163 (11%) Query: 24 DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGITDEFLKDKPSFSSIFSE 82 D IIEIGA++L D + +F+V++ P K +P ++L GI +E LK F Sbjct: 34 DEIIEIGAMKLNDELECVDSFRVYIKPTIYKELNPRIIELTGINNEDLKYGFDFKKALKH 93 Query: 83 FWDFFNEQNAEWIAHN------AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK--- 133 F EWI + D+ + ++ N + S ++ + I + Sbjct: 94 F--------KEWIGKDYILCSWCDSDIKVLKKNIEYYNPNYKVESFLVPYIDIQKYCCEI 145 Query: 134 -HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R L+ + I S + H AL DS L DV+ KM Sbjct: 146 LEYGRRVSLHDIISTENIVPSTDTFHQALDDSKLTVDVFRKMF 188 >gi|149371985|ref|ZP_01891304.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49] gi|149355125|gb|EDM43686.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49] Length = 1476 Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 15/134 (11%) Query: 10 IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58 ++FD ETTGL DS N R I+I A +L D Q +L P G + Sbjct: 3 LIFDTETTGLPRNWNAPLSDSDNWPRCIQI-AWQLHDEMGNVIEHQDYLVQPEGFNIPFD 61 Query: 59 ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KD 116 A K+HGI+ E K S + ++F + + + N FD+ + AE R+ ++ Sbjct: 62 AEKIHGISTELAAAKGISLEDMMAKFQEVLGKTKF-LVGQNVGFDLNIMGAEFLRLGLEN 120 Query: 117 PLDPSRIIDTLSIA 130 PL ++DT + A Sbjct: 121 PLPDMPLLDTCTEA 134 >gi|228471624|ref|ZP_04056398.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC 33624] gi|228277043|gb|EEK15729.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC 33624] Length = 1484 Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 15/132 (11%) Query: 10 IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPE 58 ++FD ETTGL DS+N R ++I A +L D + FL P+G + Sbjct: 3 LIFDTETTGLPRNYNAPISDSENWPRAVQI-AWQLHDEKGALLEHKDFLIIPDGYTIPYD 61 Query: 59 ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KD 116 A ++HGI+ E ++ S +F EF + + + N FD+ + AE R Sbjct: 62 AERIHGISTELATEQGVSIHKVFEEFEKALS-KTQYIVGQNIGFDIHIMGAEFYRYGVST 120 Query: 117 PLDPSRIIDTLS 128 LD I+DT S Sbjct: 121 VLDKLPILDTCS 132 >gi|260060780|ref|YP_003193860.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501] gi|88784910|gb|EAR16079.1| DNA polymerase III, alpha subunit [Robiginitalea biformata HTCC2501] Length = 1453 Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 15/132 (11%) Query: 10 IVFDIETTGLDSKND----------RIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPE 58 ++FD ETTGL + D R I+I A +L D + + + P+G + Sbjct: 3 LIFDTETTGLPKRWDAPASDTDNWPRCIQI-AWQLHDGEGRLVEQYDALVRPDGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKD 116 A ++HGI+ + +++ + F + + N FD+ + AE R+ ++D Sbjct: 62 AEQIHGISTDLAREEGLPLEEVLEAFRGALSRTQF-LVGQNVGFDINVMGAEFYRVADED 120 Query: 117 PLDPSRIIDTLS 128 PL+ ++DT + Sbjct: 121 PLEKFPVLDTCT 132 >gi|257454169|ref|ZP_05619440.1| exonuclease, Ycg4D [Enhydrobacter aerosaccus SK60] gi|257448430|gb|EEV23402.1| exonuclease, Ycg4D [Enhydrobacter aerosaccus SK60] Length = 217 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 10/97 (10%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLHGIT 66 +++ FD ET G + D+IIEI + ++R + L R +SP A K+HGI Sbjct: 48 KRLFFDTETIG-GGREDQIIEIA------FCDSDRHVIIDTLIYTDRTSSPGAFKVHGIY 100 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103 L KP+F I + A+NA FD+ Sbjct: 101 PHELIGKPTFIDIQPAIVQLLKGRT--LYAYNANFDI 135 >gi|90407122|ref|ZP_01215310.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3] gi|90311698|gb|EAS39795.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3] Length = 238 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 6/74 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCP--NGRKNSPEALKLHGIT 66 + D ETTGLDSK + II IG V L + + ++ P N ++NS + +HGIT Sbjct: 49 VALDFETTGLDSKQNSIISIGLVPFDLQRIYCRKAKKWYINPEDNLKENS---IIIHGIT 105 Query: 67 DEFLKDKPSFSSIF 80 L+ P SI Sbjct: 106 HSDLQGAPDLLSIL 119 >gi|88802793|ref|ZP_01118320.1| DNA polymerase III subunit [Polaribacter irgensii 23-P] gi|88781651|gb|EAR12829.1| DNA polymerase III subunit [Polaribacter irgensii 23-P] Length = 361 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 15/162 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTG + I EI + +S ++ F + P ++ ++L GI ++ L Sbjct: 4 ILDIETTGGKFNEEGITEIAIYKFDGHSVVDQ-FISLVNPE-KEIQQFVVRLTGINNKML 61 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPSRIIDT 126 + P F I + ++ +AHN FD ++ E R+ N++ L + Sbjct: 62 RSAPKFYEIAKRIIEI--TKDCTLVAHNTTFDYRILSTEFDRLGYDFNRNTLCTVELSKQ 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITIS--HRSKHGALLDSHL 166 L + + PS L L K GI ++ HR+ AL L Sbjct: 120 LILDQ---PSY--SLGKLTKALGIPMTDRHRASGDALATVQL 156 >gi|319901725|ref|YP_004161453.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes P 36-108] gi|319416756|gb|ADV43867.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes P 36-108] Length = 256 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 6/114 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTG + +DRI+EI +++ Y N + EA +HGI DE Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKV--YPNGNEEAKTMRINPEMHIPAEASAVHGIYDED 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSR 122 + P+F + + + + ++ N+ +FD+ + E R D +D SR Sbjct: 68 VAKCPTFKEVARNIAN--DIEGSDLAGFNSNRFDIPVLAEEFLRAGVD-IDMSR 118 >gi|212551002|ref|YP_002309319.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549240|dbj|BAG83908.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 258 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 15/143 (10%) Query: 2 IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCPNGRKNS 56 ++ N R IVF D+ETTG + +DRI+EI ++++ KT R P Sbjct: 1 MKLNLKRPIVFFDLETTGTNIISDRIVEISYLKVMPNDEKEIKTRRINPEIPIPK----- 55 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINK 115 EA +HGIT+E +K+ F +I + + +N+ +FD+ + E R Sbjct: 56 -EASDIHGITNEDVKNALPFKAIAKLLAS--QIEGCDLAGYNSNRFDIPILAEEFLRAGI 112 Query: 116 D-PLDPSRIIDTLSIARRKHPSS 137 D + +D +I +K P + Sbjct: 113 DVDWTKQKFVDVQTIFHKKEPRT 135 >gi|168207510|ref|ZP_02633515.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens E str. JGS1987] gi|170661145|gb|EDT13828.1| putative DNA polymerase III, epsilon subunit [Clostridium perfringens E str. JGS1987] Length = 204 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 7/124 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + FD ETTG+ K I ++ + + +K +T + + PEA ++HG + Sbjct: 1 MKLLFFDTETTGV--KPGSICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFS 58 Query: 67 DE---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 E L + F +++ F + F E + I HN +FD+ F+ EL + + +P+ + Sbjct: 59 LEKLYELSEGMYFEDLYANFINDFLEADF-IIGHNVQFDIKFLKHELLGLG-EFFEPNNV 116 Query: 124 IDTL 127 T+ Sbjct: 117 FCTM 120 >gi|188585233|ref|YP_001916778.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349920|gb|ACB84190.1| Exonuclease RNase T and DNA polymerase III [Natranaerobius thermophilus JW/NM-WN-LF] Length = 170 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 P + +HGI E ++D+P FS I+ E + +N +AHNA FD+ + L + D Sbjct: 23 PYNVYIHGIKPEDVRDEPDFSEIWREISTYL--ENNLVVAHNASFDISVLRHVLDLYDLD 80 Query: 117 PLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + T +A ++ P + L S+ K + H H A+ D++ + + + Sbjct: 81 -YPQFDYLCTKKLAEKQWPHLDKYGLKSIAKFLDVKFKH---HDAMEDAYACAQIAV 133 >gi|58616403|ref|YP_195533.1| DNA polymerase III subunit epsilon [Azoarcus sp. EbN1] gi|56315865|emb|CAI10509.1| putative exonuclease [Aromatoleum aromaticum EbN1] Length = 342 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 41/187 (21%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTN-------RTFQVFLCPNGRKNSPEALKLHGI 65 D+ETTGL +D+II+IG V L ++ + + + F P GR E +L GI Sbjct: 47 DVETTGLKKDSDKIIDIGLV-LAEFDRVSGQVLRVLERYSGFEDP-GRPIPEEITRLTGI 104 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEW--------IAHNAKFDVGFINAELQRINKDP 117 DE + ++ F++ E +AHNA FD GF+ K Sbjct: 105 RDEDVLEQ------------TFDDARVEALIARADLVVAHNAPFDRGFLELRFPSFQK-- 150 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSL---CKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++R+ P S+ S + I H AL+D+ + + +M Sbjct: 151 -------KWWACSQREAPWSQMMTGSTKLEWLAFQIGGCFYEAHRALVDAEVTLFILAQM 203 Query: 175 MVGGSQI 181 GG I Sbjct: 204 GPGGRPI 210 >gi|295840123|ref|ZP_06827056.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] gi|197696983|gb|EDY43916.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] Length = 243 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 14/160 (8%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +K R FDIE+TG+D + RI+ ++ + + +L + EA +HG Sbjct: 4 HKQRYCAFDIESTGVDVETARIVTACVAQVRGGALPE--TRSWLADPSIEIPDEATAVHG 61 Query: 65 I-TDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPL-- 118 I TD + + E + A +A NA++D+ ++ E +R + L Sbjct: 62 ITTDRARAEGRPAGEVVEEITTLLHSCLLAGAPVVAMNARYDLTLLDRECRRHERPTLAD 121 Query: 119 ----DPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 D ++D L + R+ ++ + L +L + Y + + Sbjct: 122 RLGGDVRPVLDPLVLDRQVDRYRRGKRTLTALAEHYRVPL 161 >gi|307942306|ref|ZP_07657657.1| putative exonuclease RNase T and DNA polymerase III [Roseibium sp. TrichSKD4] gi|307774592|gb|EFO33802.1| putative exonuclease RNase T and DNA polymerase III [Roseibium sp. TrichSKD4] Length = 195 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 11/121 (9%) Query: 7 MRKIVFDIETTGL-------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MR+ D+ TTGL D R+++ V + Q ++ ++ S A Sbjct: 1 MRQTPMDLATTGLPRGRNINDPDYPRMVQFSGVLFTTDGTVHGRAQDYIQQEDKRTSKSA 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN--AKFDVGFINAELQRINKDP 117 +HGITD + + W F N A I FD+ I A L R+NKDP Sbjct: 61 ENVHGITDTKSRTL-GIPEAIAVAW-FTNRLKASEIVTGWALPFDLDIIRAALIRMNKDP 118 Query: 118 L 118 L Sbjct: 119 L 119 >gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301] Length = 958 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 38/139 (27%) Query: 12 FDIETTGLDSKNDRIIEIG-AVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG D NDRI+ + AVE F+ + P FL Sbjct: 391 FDTETTGFDIFNDRIVGLSLAVE---------PFKAWYVP------------------FL 423 Query: 71 -KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 KD P ++ I F ++ I N KFD+ + I R+ DT+ + Sbjct: 424 EKDTPEYAEIVRP---LFEDEKIAKIGQNIKFDLMVLRRLGITIR------GRMYDTMIL 474 Query: 130 ARRKHPSSRNDLNSLCKRY 148 P SR+++N+L ++Y Sbjct: 475 HYLLDPESRHNMNALAEKY 493 >gi|225175900|ref|ZP_03729892.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter alkaliphilus AHT 1] gi|225168488|gb|EEG77290.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter alkaliphilus AHT 1] Length = 198 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 13/101 (12%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDY----SKTNRTFQVFLCPN--GRKNSPEALKLHGIT 66 D+ETTGL + + I+E+ A+ L Y + R ++ G SP A ++HG+ Sbjct: 16 DVETTGLSPRKEEIVEL-AICLFAYRRDSGEITRIVDRYVGQREPGVPVSPGAARVHGLR 74 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFI 106 L+ K ++ +AE+I AHNA FD GF+ Sbjct: 75 MADLRGKQLDTARIEAIL-----HSAEFIVAHNASFDRGFV 110 >gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176] gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] Length = 879 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 55/138 (39%), Gaps = 28/138 (20%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD ETTGLD+K +I+ N F V L N E + L Sbjct: 319 IAFDTETTGLDTKEAKIVGFSFC-----MNENEAFYVPLTHN-YLGVGEQISLQSA---- 368 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 K + +IF+ F I HN K+D I N D P + DT+ + Sbjct: 369 ---KKAIEAIFNHF----------VIGHNLKYDFKIIQN-----NFDLNLPQKYADTMIL 410 Query: 130 ARRKHPSSRNDLNSLCKR 147 A K+PS R +++ L R Sbjct: 411 AWLKNPSLRVNMDDLALR 428 >gi|74316107|ref|YP_313847.1| exonuclease [Thiobacillus denitrificans ATCC 25259] gi|74055602|gb|AAZ96042.1| Exonuclease [Thiobacillus denitrificans ATCC 25259] Length = 233 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/27 (55%), Positives = 21/27 (77%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL 34 R +V D+ET+GLD + DR+I IGAV + Sbjct: 41 RCVVVDVETSGLDPRRDRLIAIGAVAV 67 >gi|161833722|ref|YP_001597918.1| putative DNA polymerase III subunit alpha (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri GWSS] gi|152206212|gb|ABS30522.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri GWSS] Length = 1411 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 12/117 (10%) Query: 10 IVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVF------LCPNGRKNSP 57 I+FD ETTGL D II + + L + + Q+ + P G + Sbjct: 3 IIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLIELKDYIIKPEGYEIPF 62 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 + K+HGI+ ++ +K + E ++ +++ I HN FD+ + AE RIN Sbjct: 63 NSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSNFLIGHNVFFDIKIVCAEFIRIN 119 >gi|310830415|ref|YP_003965516.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2] gi|309249882|gb|ADO59448.1| 3-5 exonuclease eri-1 [Paenibacillus polymyxa SC2] Length = 193 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Query: 7 MRKIVFDIETTGLD---SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKL 62 M I+ D+E T + SK + IIEIGAV+L D+ FQ F+ P E ++L Sbjct: 1 MNYIIVDLEATCWENDRSKRNEIIEIGAVKLDDHLNVVSEFQAFVKPKLYPQLSEFCMQL 60 Query: 63 HGITDEFLKDKPSFSSIFSEF 83 I + +F ++ +F Sbjct: 61 TSIEQHDVDHAATFETVLEDF 81 >gi|328776163|ref|XP_003249125.1| PREDICTED: hypothetical protein LOC100577651 [Apis mellifera] Length = 321 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 36/210 (17%) Query: 10 IVFDIETTGLDSKN--DRIIEIGAVELLDYSKTN------RTFQVFLCP--NGRKNSPEA 59 I FD+ETTGL +KN ++ E+ + + + N R Q + P S E Sbjct: 6 IFFDLETTGLITKNCMPKVTELSLIAVSRTAVCNTKDFLPRVLQKLILPIHPNLNISKEI 65 Query: 60 LKLHGITDEFLKDKPSFSS-IFSEFWDFFNEQNAE--WIAHNA-KFDVGFINAELQRINK 115 L G+++E L + F+ +++ +F N Q A ++A+N FD + +EL+ I+K Sbjct: 66 ETLTGLSNENLCEIQHFNCDVYNLIINFINRQKAPTCFVAYNGNNFDYPILLSELKTIDK 125 Query: 116 DPLDPSRIIDTLSIAR----RKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ID L + + R+ P + N +N+ C I + S LL+D Sbjct: 126 SFSENILSIDMLQLIKDFFLREEPIKKMNNQINNSC---NIEV-----------STLLND 171 Query: 170 VYIKMMVGG--SQINFGFKTNEDRFFKEEK 197 Y K++ S IN D F K EK Sbjct: 172 GYDKILSDALDSIINTNDDNKNDTFLKIEK 201 >gi|307169180|gb|EFN61996.1| Prion protein-interacting protein [Camponotus floridanus] Length = 236 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 13/98 (13%) Query: 10 IVFDIETTG---LDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGR-KNSPEALKLHG 64 +V D E T + + IIE+ V L K TF ++ P K +P ++L G Sbjct: 28 LVMDFEATCDKQVTLQPQEIIELPCVALSTSDWKLKDTFHAYIRPRVYPKLTPFCIELTG 87 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 I E + D+P F+ +FS+F +W+ FD Sbjct: 88 IMQEMVDDQPCFADVFSKF--------RKWLIEGGYFD 117 >gi|257125974|ref|YP_003164088.1| exonuclease RNase T and DNA polymerase III [Leptotrichia buccalis C-1013-b] gi|257049913|gb|ACV39097.1| Exonuclease RNase T and DNA polymerase III [Leptotrichia buccalis C-1013-b] Length = 212 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 33/192 (17%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-----------RTFQVFLCPN-GRKNSP 57 I FD+ET G + ++ + A+++ +Y+ N F F N G + + Sbjct: 12 IFFDVETNGF--QGSSVLSMSAIKV-NYNSENTGEEKNKWKKVSEFNRFYFRNEGEELNE 68 Query: 58 EALKLHGITDE-FLKDKPS--------FSSIFSEFWD---FFNEQNAEWIAHNAKFDVGF 105 A+ ++G+TD+ L ++ S + F E D F + + ++AHN KFD F Sbjct: 69 GAVSVNGLTDDVILSERKSIIQNTGIEYPLTFKEDMDNFFLFCQDTSHFVAHNIKFDRSF 128 Query: 106 INAELQRINKDPLDPSRI--IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 ++ LQ L I ++ S K P L Y I HG+ D Sbjct: 129 VDFPLQNQFDTMLTNIDIVKVNGSSYGNYKWPK----LMECANYYNIPFEESQLHGSYYD 184 Query: 164 SHLLSDVYIKMM 175 ++ ++ KMM Sbjct: 185 VLIMFRIFFKMM 196 >gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] Length = 879 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 30/139 (21%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD ETTGLD+K +I+ N F V L N E + L Sbjct: 319 IAFDTETTGLDTKEAKIVGFSFC-----MNENEAFYVPLTHN-YLGVGEQISLQSA---- 368 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLS 128 K + IF+ F I HN K+D I N L+ P + DT+ Sbjct: 369 ---KKAIEVIFNHF----------VIGHNLKYDFKIIQ------NNFGLNLPQKYADTMI 409 Query: 129 IARRKHPSSRNDLNSLCKR 147 +A K+PSSR +++ L R Sbjct: 410 LAWLKNPSSRVNMDDLALR 428 >gi|15221225|ref|NP_177579.1| exonuclease family protein [Arabidopsis thaliana] gi|12324816|gb|AAG52378.1|AC011765_30 putative exonuclease; 20146-18080 [Arabidopsis thaliana] gi|20466502|gb|AAM20568.1| putative exonuclease [Arabidopsis thaliana] gi|23198160|gb|AAN15607.1| putative exonuclease [Arabidopsis thaliana] gi|332197464|gb|AEE35585.1| polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana] Length = 506 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 24/160 (15%) Query: 12 FDIETTGLDSKNDR---IIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 FD+ET + +K+ I+E GA+ EL YS R + L K Sbjct: 16 FDLET-AVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTK------ 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119 + GIT + + +FS I + +D + + W HN +FD I I P + Sbjct: 69 RRSGITRDGVLSAHTFSEIADKVYDILHGRI--WAGHNIIRFDCVRIREAFAEIGLSPPE 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156 P ID+LS+ +K D+ SL +G+ +HRS Sbjct: 127 PKATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRS 166 >gi|330965486|gb|EGH65746.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091] Length = 237 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 4/107 (3%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +V D+ET+GL+ D+++ IGAV + D + + F+ L K SP L +HG Sbjct: 40 QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVL-IHG 98 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + + +F +F E + + +A FD + L+ Sbjct: 99 LAPSAIAAGSEPVEALLDFMEFVGE--SPILGFHAPFDQHMLGRALK 143 >gi|258620167|ref|ZP_05715206.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus VM573] gi|262165546|ref|ZP_06033283.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223] gi|258587525|gb|EEW12235.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus VM573] gi|262025262|gb|EEY43930.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223] Length = 233 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 18/168 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL+++ D I+ IG V Q +L + ++ +HGIT Sbjct: 45 VALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQPTKPLEEGSVVIHGITHSE 104 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ + SE +D + +AH + F+ + + ++ IIDTL I Sbjct: 105 LRHAQEPEVVLSELFDALRGKIV--VAHFRHIEREFLRQATLNLWDEAVE-FPIIDTLEI 161 Query: 130 ARRKHPSSRNDLNSLCK-------------RYGITISHRSKHGALLDS 164 + R+ L + RYG+ S H AL D+ Sbjct: 162 EHYVQNAQRSLWQRLLRRPLNSVRLGQSRLRYGLPAY--SPHHALTDA 207 >gi|297806807|ref|XP_002871287.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] gi|297317124|gb|EFH47546.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata] Length = 468 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 11/153 (7%) Query: 12 FDIETTGLDSKNDR--IIEIGAVELLDYSKTN-RTFQVFLCPNGRK-NSPEALKLHGITD 67 FD+ETT + ++ R I+E G++ + T R++ + P S +++ +GI Sbjct: 12 FDVETT-VPNRGQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRCNGIKR 70 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126 + + P F+ I +D + + W HN +FD I I + P +P ID+ Sbjct: 71 DDVVLAPLFADIADTVYDILHGRI--WAGHNILRFDCARIREAFAEIGRQPPEPKGAIDS 128 Query: 127 LSIARRKHPSSRNDLN--SLCKRYGI-TISHRS 156 L + ++ D+ +L + +G+ +HRS Sbjct: 129 LGLLTQQFGRRAGDMKMATLARYFGLGNQTHRS 161 >gi|224023848|ref|ZP_03642214.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM 18228] gi|224017070|gb|EEF75082.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM 18228] Length = 258 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 5/108 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTG + DRI+EI +++ Y N + G + +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKV--YPNGNEESKTMRINPGMHIPEASSAIHGIYDAD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 + D P+F + + + + A+ N+ +FDV + E R D Sbjct: 68 VADCPTFKEVAKDIAR--DLEGADIAGFNSNRFDVPVLVEEFLRAGID 113 >gi|126668711|ref|ZP_01739661.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] gi|126626811|gb|EAZ97458.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] Length = 294 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 17/111 (15%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS----PEAL-KLHGI 65 + D+ETTGL + ND+IIE+G V++ T + ++ + ++ P + ++ GI Sbjct: 51 ILDLETTGLSAANDKIIELGLVKVRVSPSTGQLTEIVSMLDQYEDPGIPIPAVITEITGI 110 Query: 66 TDEFLK----DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 TD+ + D+ + + + + +AHN+ FD GF L + Sbjct: 111 TDDMVAGRRLDEGALAQALA--------GDGIILAHNSSFDRGFFEKRLPQ 153 >gi|149375575|ref|ZP_01893345.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter algicola DG893] gi|149360280|gb|EDM48734.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter algicola DG893] Length = 240 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 23/176 (13%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N + + D ETTGLD I+ IG V L + + + P + ++ +H Sbjct: 46 NDVPFVAVDFETTGLDPDKHSIVSIGVVPFTLGRVQLGGSRHWLVKPQLPLHQ-TSVTIH 104 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSR 122 GIT + P + E + + H + F+N L+ RI ++ P Sbjct: 105 GITHTDIDKAPDLDDVLDEILKSLAGRIP--VVHYRNIERPFLNMALKWRIGEEIRFP-- 160 Query: 123 IIDTLSIARRKHPSSRNDLNSLCK--------------RYGITISHRSKHGALLDS 164 ++DT++I HP+ + K RYG + H H AL+D+ Sbjct: 161 VMDTMAIEAYLHPNRKRSWWQKLKGQQPISIRLADSRLRYG--LPHYPPHNALVDA 214 >gi|222149472|ref|YP_002550429.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4] gi|221736455|gb|ACM37418.1| polymerase epsilon subunit [Agrobacterium vitis S4] Length = 326 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 8/103 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN--RTFQVF--LCPNGRKNSPEALKL 62 ++ I+ D ETTGL+ + D IIEIG + S N +V+ L + L Sbjct: 71 LKGIILDTETTGLNWRKDEIIEIGLIAFTFDSNGNIGDVTEVYGGLQQPSMSIPADITTL 130 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGF 105 GITDE + + SI E E IAHNA FD F Sbjct: 131 TGITDEVVAGQ----SIDMEVVQALIEPADLVIAHNAGFDRPF 169 >gi|296114717|ref|ZP_06833368.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC 23769] gi|295978751|gb|EFG85478.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC 23769] Length = 298 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 11/115 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-----DYSKTNRTFQVFLCPNGRKNSPEALKL 62 R I+ D+ETTGLD + D IIE+ V + F+ P + S E KL Sbjct: 40 RAILVDVETTGLDCEKDEIIELAMVPFFYTHFGEIVGIGAPFEGLRKP-AKPISSEVTKL 98 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 GI + ++ K + F + +AHNA FD F+ +P Sbjct: 99 TGIDNAMVEGKAINPDEVAAF-----AGTSLVVAHNAAFDRRFLERFCHAFAGNP 148 >gi|255324350|ref|ZP_05365469.1| DNA polymerase III subunit epsilon [Corynebacterium tuberculostearicum SK141] gi|255298569|gb|EET77867.1| DNA polymerase III subunit epsilon [Corynebacterium tuberculostearicum SK141] Length = 432 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 11/100 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN---GRKNSPEALKLHGIT 66 + ++TTG+ RI+ I A+ D + + F L P+ G ++ LHG++ Sbjct: 56 VALTLQTTGIHPSTGRIVTIDAIAFNDAGEQGQLFHAVLKPDIDAGPRH------LHGLS 109 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 ++ P+F I + + I H+ + GF+ Sbjct: 110 TTDIEQAPAFGKILKSLDKLIDGRT--LIVHDLPYTWGFL 147 >gi|172040411|ref|YP_001800125.1| DNA polymerase III subunit epsilon [Corynebacterium urealyticum DSM 7109] gi|171851715|emb|CAQ04691.1| DNA polymerase III, epsilon subunit [Corynebacterium urealyticum DSM 7109] Length = 237 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 23/159 (14%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQV----FLCPNGRKNSPEAL 60 N + FD+ETTG + + RI+ V + R QV L G + +A Sbjct: 21 NPAHMLSFDLETTGTNPLSARIVTSAMVRI-------RGSQVEDVELLADPGVEIPEQAS 73 Query: 61 KLHGITDEFLKD--KPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINK 115 +HGIT E+ ++ KP + +E E+ A + NA +D+ + ++ Sbjct: 74 AVHGITTEYAREHGKP-HDEVLAETIRAIRQGWEEGATLVVFNAPYDLTVLRSQDPSFTV 132 Query: 116 DPLDPSRIIDTLSIARR--KHPSSRNDLNSLCKRYGITI 152 D +ID L + R ++ + L ++C+ Y + + Sbjct: 133 D----GPVIDPLLLDRHFDQYRKGKRTLGAVCEHYEVAL 167 >gi|332977795|gb|EGK14553.1| DNA-directed DNA polymerase III epsilon subunit [Psychrobacter sp. 1501(2011)] Length = 201 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D E TGL+ K D ++ I A+ + + + +C + E + +HG+ Sbjct: 34 VAIDCEMTGLNPKKDHLLSIAAIHINGSNIQSGQGLHLICRPPVMPTKETIVIHGLRPID 93 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 +++ S+ + F + N + + + D+GF+N Sbjct: 94 VENGLSYEQMLERLLPFID--NRPIVGYCPQLDMGFLN 129 >gi|330874768|gb|EGH08917.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 237 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 8/115 (6%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +V D+ET+GL+ D+++ IGAV + D + + F+ L K SP L +HG Sbjct: 40 QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVL-IHG 98 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + + +F +F E + + +A FD L R K+ LD Sbjct: 99 LAPSAIAAGSEPVEALLDFMEFVGE--SPILGFHAPFD----QHMLARALKESLD 147 >gi|330829910|ref|YP_004392862.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565] gi|328805046|gb|AEB50245.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565] Length = 208 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 36/176 (20%), Positives = 79/176 (44%), Gaps = 13/176 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++ D ETT LD + I+ IGAV + + T + + P +++ +HG+ Sbjct: 31 QVALDFETTSLDPEQAEIVSIGAVRIQGNRLLTGEALAIKVQPPASLTG-QSVVIHGLRH 89 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+ + + F + E + ++ +D+ +N Q++ + L P R I+ Sbjct: 90 QDLQQGMTLEAALRLLLHFIGPR--ELVGYHVAYDLRILNLACQKLWELTL-PQRGIEVS 146 Query: 128 SIAR----RKHPSSRNDLN--SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + R++P + DL+ ++C + + H AL D+ + +Y+++ G Sbjct: 147 QLYHDHLYRRYPDAAIDLHLSAICSH--LELPSLPAHDALADATTAALIYLRLTCG 200 >gi|90412153|ref|ZP_01220159.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] gi|90326877|gb|EAS43262.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] Length = 238 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 25/172 (14%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+ K D II IG V L+ NR + P + N +++ +H IT Sbjct: 49 VAMDFETTGLNVKKDGIITIGLVPFTLNRVYINRAQHWIVRPRQKLNE-QSVVIHNITHN 107 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTL 127 + D P S + + + H + + F++ L+ RI + P +IDTL Sbjct: 108 DILDAPDLSEVIEPVLAALAGRVV--VVHYRRIEREFLDRALKDRIKEGIEFP--VIDTL 163 Query: 128 SIA---------------RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + + K P S L KRYG+ + H AL D+ Sbjct: 164 DLEAHIQQRLNGGFWNKLKGKKPQSVR-LAQARKRYGLPAY--TPHHALTDA 212 >gi|229916087|ref|YP_002884733.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium sp. AT1b] gi|229467516|gb|ACQ69288.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium sp. AT1b] Length = 188 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ET DS++ I +G +L T Q + P + +++HGI Sbjct: 6 LALDVETANRDSRS--ICSVGW-SILQNGDVVETDQRLVNPEEDFDMGN-IRVHGIRPSD 61 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + S + E + IAHNA FD+G + + + + T+ + Sbjct: 62 VWDAPALPEVLSSLYPILREVDLV-IAHNASFDMGALRKAIVKYDLFDFPTIEYGCTVKL 120 Query: 130 ARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R+ +P N LN++ + + H H A D+ + + + MM Sbjct: 121 SRKLYPGLPNHKLNTMAEHLNVPFIH---HDAAEDARVCALLMRDMM 164 >gi|332197465|gb|AEE35586.1| polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana] Length = 495 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 24/160 (15%) Query: 12 FDIETTGLDSKNDR---IIEIGAV--------ELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 FD+ET + +K+ I+E GA+ EL YS R + L K Sbjct: 16 FDLET-AVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTK------ 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD 119 + GIT + + +FS I + +D + + W HN +FD I I P + Sbjct: 69 RRSGITRDGVLSAHTFSEIADKVYDILHGRI--WAGHNIIRFDCVRIREAFAEIGLSPPE 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLN--SLCKRYGIT-ISHRS 156 P ID+LS+ +K D+ SL +G+ +HRS Sbjct: 127 PKATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRS 166 >gi|134044532|ref|YP_001101863.1| putative exonuclease [Yersinia ruckeri] gi|133904895|gb|ABO40912.1| putative exonuclease [Yersinia ruckeri] Length = 289 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 12/76 (15%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN---SPEALKLH 63 + +V D ETTGL + D++IE+ ++ V LC R P+A+ +H Sbjct: 104 LEPLVLDTETTGLGER-DQVIELAVTDIRGA--------VLLCTRLRPTVEIDPQAMGVH 154 Query: 64 GITDEFLKDKPSFSSI 79 GI + L ++P+++ + Sbjct: 155 GINEAELSNEPTWNQV 170 >gi|237715177|ref|ZP_04545658.1| DNA Pol III epsilon chain [Bacteroides sp. D1] gi|262408870|ref|ZP_06085415.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647646|ref|ZP_06725213.1| exonuclease [Bacteroides ovatus SD CC 2a] gi|294810715|ref|ZP_06769363.1| exonuclease [Bacteroides xylanisolvens SD CC 1b] gi|298481744|ref|ZP_06999934.1| exonuclease [Bacteroides sp. D22] gi|229445010|gb|EEO50801.1| DNA Pol III epsilon chain [Bacteroides sp. D1] gi|262353081|gb|EEZ02176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637012|gb|EFF55463.1| exonuclease [Bacteroides ovatus SD CC 2a] gi|294442048|gb|EFG10867.1| exonuclease [Bacteroides xylanisolvens SD CC 1b] gi|295087704|emb|CBK69227.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Bacteroides xylanisolvens XB1A] gi|298271966|gb|EFI13537.1| exonuclease [Bacteroides sp. D22] Length = 259 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68 + FD+ETTG + DRI+EI +++ Y N + L N + PEA +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKV--YPNGNEEAKT-LRINPEMHIPEASSAIHGIYDA 66 Query: 69 FLKDKPSFSSI 79 + D P+F + Sbjct: 67 DVADCPTFKEV 77 >gi|19551498|ref|NP_599500.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC 13032] gi|62389145|ref|YP_224547.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum ATCC 13032] gi|21323011|dbj|BAB97640.1| DNA polymerase III epsilon subunit and related 3'-5' exonucleases [Corynebacterium glutamicum ATCC 13032] gi|41324478|emb|CAF18818.1| DNA polymerase III epsilon subunit or related 3'-5' exonuclease [Corynebacterium glutamicum ATCC 13032] Length = 360 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 5/107 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + I+++G+ R++ I V L + TF L K P LHG+T+E Sbjct: 28 VSVSIQSSGIHPSTSRMVTIDLVTLSPNLEPVETFHAVL---DSKTDPGPFHLHGVTEEE 84 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 F I + + + HNA GFI +E +R D Sbjct: 85 FASAKRFGQILKSLDRLIDGRT--LLIHNAARSWGFIVSEAKRAMND 129 >gi|237710744|ref|ZP_04541225.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA] gi|229455466|gb|EEO61187.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA] Length = 260 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 9/110 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPE-ALKLHGITD 67 + FD+ETTG + DRI+EI +++ S + +T ++ N + PE + +HGI D Sbjct: 12 VFFDLETTGTNINTDRIVEICYLKVYPNSNEETKTMRI----NPEMHIPEQSSAIHGIYD 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 + D P+F + E + + + N+ +FD+ + E R D Sbjct: 68 ADVADCPTFKEVAKEIAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVD 115 >gi|207092434|ref|ZP_03240221.1| DNA polymerase III subunit epsilon [Helicobacter pylori HPKX_438_AG0C1] Length = 160 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 7/91 (7%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL-KLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + K+ P+ + +L GIT E Sbjct: 76 IDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLV---KVKSVPDYIAELTGITYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKF 101 + PS E F N+ ++AHNA F Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANF 160 >gi|257463061|ref|ZP_05627463.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium sp. D12] Length = 129 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 11/118 (9%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEALKLHGI 65 M+ + FD ETTGL ++ II++ A+ +D + T ++ P + S EAL + + Sbjct: 1 MKILYFDTETTGLTYRS-TIIQLAAIIEID-GEVKETVNLYSAPFPDSDISEEALAVTKL 58 Query: 66 TDE--FLKDKPS-----FSSIFSEFWDFFNEQNA-EWIAHNAKFDVGFINAELQRINK 115 T E F D P F+ I ++ D +N+ + + HN KFD+ + R N+ Sbjct: 59 TREEIFRFDSPQLTCEMFTQILGKYVDKYNKNDKFTAVGHNVKFDLDMLRNWAYRCNE 116 >gi|330956986|gb|EGH57246.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326] Length = 237 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +V D+ET+GL+ D+++ IGAV + D + + F+ L K SP L +HG Sbjct: 40 QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVL-IHG 98 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + + + +F +F ++ + +A FD L R K+ LD Sbjct: 99 LAPSTIAAGSEPAQALLDFMEFVG--DSPILGFHAPFD----QHMLARALKESLD 147 >gi|291614958|ref|YP_003525115.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus ES-1] gi|291585070|gb|ADE12728.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus ES-1] Length = 235 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 14/163 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTGL+ D +I IGAV +++ +F V L + E + +HGI+ Sbjct: 42 RVVVVDVETTGLNLITDTLISIGAVAVVNGRIALGDSFSVVL-KQQESSDKENILVHGIS 100 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-----INKDPLDPS 121 +D F ++ + + IA + FD I +++ + LD + Sbjct: 101 STAQRDGVDPVEALLTFLEYLGK--SRLIAFHVAFDETMIRRAMRQYLGLSFKHEWLDLA 158 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 ++ L+ R + L+ R+ I I ++H AL D+ Sbjct: 159 YVMPALN---RSLMENHRVLDDWIGRFNIHIE--ARHNALADA 196 >gi|149278873|ref|ZP_01885008.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39] gi|149230492|gb|EDM35876.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39] Length = 1477 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 35/255 (13%) Query: 10 IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 ++FD ETTGL D+ N R I+I ++ K + P G +A Sbjct: 3 LIFDTETTGLPRNWNAPITDTDNWPRCIQIAWQLHDEFGKLVEHQDYLVKPEGFNIPYDA 62 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW---IAHNAKFDVGFINAELQRINKD 116 ++HGI+ E +++ +E + FNE ++ + N FDV + E R+ D Sbjct: 63 ERIHGISTELAEEQ---GISLAEVVEKFNEALSKARFVVGQNIGFDVNIMGCEFHRLGVD 119 Query: 117 -PLDPSRIIDT---LSIARRKHPSSRND---LNSLCK--RYGITISHRSKHGALLDSHLL 167 P+ ++DT ++ K P R L +L + +Y + H A D Sbjct: 120 SPMSSMPVLDTCTEVTAELLKLPGGRGGKFKLPNLTELHQYLFGVPFAEAHNATADVEAT 179 Query: 168 SDVYIKM--MVGGSQINFGFKTNEDRFFKE------EKKTVPNISLLKRDKPLFTRITKE 219 + ++++ M S TN R F+E E+ + +++L + R+ K Sbjct: 180 TRCFLQLIKMEVFSVEQLQCDTNYFRVFREHNPEVIERIGLSHVNLKSASDEIRKRLQKA 239 Query: 220 ELDEHDKTIQTLGKN 234 E + K QTL +N Sbjct: 240 EGPKISK--QTLAEN 252 >gi|161507225|ref|YP_001577179.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571] gi|160348214|gb|ABX26888.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571] Length = 177 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++H IT + +K+ P+ + ++ + + + AHNA+FD + L R N + + Sbjct: 50 IQVHQITADDVKNAPTMAEVWPKIKGLY-QPGMLVAAHNARFDTNVMRQSLARYNIE--E 106 Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +IDTL+ ++ P N L+++ + + H H AL DS + + I Sbjct: 107 PHYLVIDTLATSKLFEPELPNHKLDTVSDALDVELWHH--HNALSDSEACAGILI 159 >gi|255690064|ref|ZP_05413739.1| exonuclease [Bacteroides finegoldii DSM 17565] gi|260624341|gb|EEX47212.1| exonuclease [Bacteroides finegoldii DSM 17565] Length = 259 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 6/72 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITD 67 + FD+ETTG + DRI+EI +++ + ++ ++T ++ N + PEA +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEESKTLRI----NPEMHIPEASSAVHGIYD 65 Query: 68 EFLKDKPSFSSI 79 + D P+F + Sbjct: 66 ADVADCPTFKEV 77 >gi|29346773|ref|NP_810276.1| DNA Pol III epsilon chain [Bacteroides thetaiotaomicron VPI-5482] gi|29338670|gb|AAO76470.1| DNA Pol III Epsilon Chain [Bacteroides thetaiotaomicron VPI-5482] Length = 277 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITD 67 + FD+ETTG + DRI+EI +++ + ++ +T ++ N + PEA +HGI D Sbjct: 28 VFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMRI----NPEMHIPEASSAVHGIYD 83 Query: 68 EFLKDKPSFSSI 79 + D P+F + Sbjct: 84 ADVADCPTFKEV 95 >gi|262171676|ref|ZP_06039354.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] gi|261892752|gb|EEY38738.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] Length = 233 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 18/168 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL+++ D I+ IG V Q +L + ++ +HGIT Sbjct: 45 VALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQPTKPLEEGSVVIHGITHSE 104 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ + SE +D + +AH + F+ + + ++ IIDTL I Sbjct: 105 LRHAQEPEVVLSELFDALRGKIV--VAHFRHIEREFLRQATLNLWDEAVE-FPIIDTLEI 161 Query: 130 ARRKHPSSRNDLNSLCK-------------RYGITISHRSKHGALLDS 164 + R+ L + RYG+ S H AL D+ Sbjct: 162 EHYIQNAQRSLWQRLLRRPLNSVRLGQSRLRYGLPAY--SPHHALTDA 207 >gi|729197|sp|P41060|CP81_BP186 RecName: Full=Uncharacterized exonuclease CP81 gi|3337284|gb|AAC34183.1| Orf81 [Enterobacteria phage 186] Length = 194 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 10/110 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +I D ETTGL + I+EI ++ + N L + EA +HGITDE Sbjct: 20 RIFIDTETTGL-GDDAEIVEICLIDSAGFIMLNT-----LVKPTKPIPAEATAIHGITDE 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--NAELQRINKD 116 + P++ I F E ++ +NA +D I A+L + D Sbjct: 74 MVMYAPTWKDIHGAVASLFFEYG--FVIYNADYDTRLIYQTAKLYGLEND 121 >gi|323145829|gb|ADX32070.1| hypothetical protein [Pseudomonas phage P3_CHA] gi|323146015|gb|ADX32255.1| hypothetical protein [Pseudomonas phage PAK_P3] Length = 305 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 95 IAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSL 144 +AHN KFD+ INA L + + P P +IIDT IA++ N L SL Sbjct: 132 VAHNGRKFDLPTINAHLVKHDIMPPSPYKIIDTCDIAKKVFKFPSNSLKSL 182 >gi|262038648|ref|ZP_06012015.1| exonuclease RNase T and DNA polymerase III [Leptotrichia goodfellowii F0264] gi|261747318|gb|EEY34790.1| exonuclease RNase T and DNA polymerase III [Leptotrichia goodfellowii F0264] Length = 195 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 20/179 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL------DYSKTNRTFQVFLCPNGRKNSPEALKLH 63 I FD+ET G ++ I A+++ + K + + + G + A+ ++ Sbjct: 6 IFFDVETNG--KMGSSVLSISAIKVSYDFEKNSWEKVSEYDRFYFRNEGEPINFGAINVN 63 Query: 64 GITDEFLKDK---PSFSSIFSEFWD---FFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 G+TDE + +K + S F E D + + ++AHN KFD FI L K+ Sbjct: 64 GLTDEVIAEKRENADYPSTFKEDLDSFYLYCQDTKHFVAHNIKFDRSFIPFPL----KNQ 119 Query: 118 LDP-SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D ID + ++ S + L K Y + + H +L D + V+ KM Sbjct: 120 FDTMMENIDIVRAGINEYGSYKWPKLMECAKFYNVPMDEEQLHESLYDVLITFRVFYKM 178 >gi|292628026|ref|XP_002666829.1| PREDICTED: probable transcription factor PML-like isoform 1 [Danio rerio] gi|326679985|ref|XP_003201423.1| PREDICTED: probable transcription factor PML-like isoform 2 [Danio rerio] Length = 235 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 26/189 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE- 68 + FD+ETTGLDS + I+++ AV TF +F+ P R A ++ G + + Sbjct: 13 VFFDLETTGLDSSCE-IVQLAAV------SGGHTFNLFMVPR-RPFQRGASRITGFSVKH 64 Query: 69 ---FLKDKPSFSSIFSE----FWDFFNE-QNAEWIAHNA-KFDVGFINAELQRINKDP-- 117 FL +P +S E F F + + HN +FD + L + Sbjct: 65 QRLFLHRRPLLTSSLKEALLSFISFLRMLDHPLLLGHNIRRFDCPVLARALDEFSLRSHF 124 Query: 118 -LDPSRIIDTLSIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + S +DTL +AR + H SL K + +S+ + H AL D L +Y K Sbjct: 125 QREVSGFVDTLPLARQLLKDHGLQSFKQESLVKNL-LGVSY-AAHNALEDVQALQKLYWK 182 Query: 174 MMVGGSQIN 182 + +QI Sbjct: 183 LKPSANQIQ 191 >gi|168184675|ref|ZP_02619339.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum Bf] gi|237795168|ref|YP_002862720.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str. 657] gi|182672241|gb|EDT84202.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum Bf] gi|229261088|gb|ACQ52121.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum Ba4 str. 657] Length = 195 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 55/134 (41%), Gaps = 25/134 (18%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ----------VFLCPNGRKNS 56 M+KI D ETTGL E G + L Y + F+ F + + S Sbjct: 1 MKKIFIDTETTGL--------EPGEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEES 52 Query: 57 PEALKLHGITDEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 EA+ HG + E LK F + SE + +N +IAHN FD F+ AE R+ Sbjct: 53 AEAI--HGFSVEKLKILSKGKKFKDLASEISS--DLKNGIFIAHNVNFDRKFVTAEFNRL 108 Query: 114 NKDPLDPSRIIDTL 127 N P T+ Sbjct: 109 NDMNWIPKEFFCTM 122 >gi|153808235|ref|ZP_01960903.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185] gi|149129138|gb|EDM20354.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185] Length = 259 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68 + FD+ETTG + DRI+EI +++ Y N + L N + PEA +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKV--YPNGNEEAKT-LRINPEMHIPEASSAVHGIYDA 66 Query: 69 FLKDKPSFSSI 79 + D P+F + Sbjct: 67 DVADCPTFKEV 77 >gi|194172953|ref|YP_002003597.1| hypothetical protein rv5_gp095 [Escherichia phage rv5] gi|114795991|gb|ABI79165.1| conserved hypothetical protein [Escherichia phage rv5] Length = 327 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 79 IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138 + + W + ++ + +AHN+ FD G+ N P P + +DTL + ++ + Sbjct: 135 LIQDLWYYLDKCDVA-VAHNSGFDCGWANQRFAFHGLPPTSPYKEVDTLKMIKKAFRLNA 193 Query: 139 NDLNSLCKRYGIT 151 N L CK + + Sbjct: 194 NTLEYACKYFQLA 206 >gi|313114851|ref|ZP_07800350.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255] gi|310622801|gb|EFQ06257.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255] Length = 329 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 11/151 (7%) Query: 26 IIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEF- 83 I+EIGAV++ + + TF + L P RK K+ G+T L F Sbjct: 34 IVEIGAVKIDEDANVLDTFSIHLRPRIFRKLQHHIAKVTGLTQADLDKGEPIVQGLRRFM 93 Query: 84 -WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-- 140 W + + AEW DV + L N D P+ D + R+HP + Sbjct: 94 QWCGPDAEFAEW----GMDDVPVLKQNLYLCNIDESKPTIWYDLQQVFLREHPRKEGEGM 149 Query: 141 -LNSLCKRYGITISHRSKHGALLDSHLLSDV 170 L S+ R G+ + R H AL D+ +DV Sbjct: 150 TLESVVTRLGLPME-RQFHDALSDTLYTADV 179 >gi|300858788|ref|YP_003783771.1| hypothetical protein cpfrc_01371 [Corynebacterium pseudotuberculosis FRC41] gi|300686242|gb|ADK29164.1| hypothetical protein cpfrc_01371 [Corynebacterium pseudotuberculosis FRC41] gi|302206493|gb|ADL10835.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis C231] gi|302331048|gb|ADL21242.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis 1002] gi|308276735|gb|ADO26634.1| Putative DNA polymerase III epsilon subunit [Corynebacterium pseudotuberculosis I19] Length = 453 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 10/98 (10%) Query: 12 FDIETTGLDSKND---RIIEIGAVELLDYSKTNRTFQVFLC-PNGRKN--SPEALKLHGI 65 D +++ ND I +IG V++ D T++ +LC P N +P + +HGI Sbjct: 104 LDFAAVDVETANDDWGSICQIGVVKVKDGVITDKC--EWLCQPPAAINHFAPANIAIHGI 161 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103 +K FS F+E F + AHNA+FD+ Sbjct: 162 RPNDVKTAQPFSECFAEMLSFVGK--LPLAAHNAQFDM 197 >gi|333030104|ref|ZP_08458165.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] gi|332740701|gb|EGJ71183.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis DSM 18011] Length = 256 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 10/74 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + FD+ETTG + +DRI+EI +++ + SKT R P E+ +HGI Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKVHPNGNEESKTLRINPEMPIP------AESSAIHGI 63 Query: 66 TDEFLKDKPSFSSI 79 DE + D P+F + Sbjct: 64 FDEDIADCPTFKEV 77 >gi|311740580|ref|ZP_07714407.1| DNA polymerase III subunit epsilon [Corynebacterium pseudogenitalium ATCC 33035] gi|311304100|gb|EFQ80176.1| DNA polymerase III subunit epsilon [Corynebacterium pseudogenitalium ATCC 33035] Length = 223 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 29/160 (18%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R + FD+ETT + K RI+ V + D K L G + EA +HGI Sbjct: 7 RMLAFDLETTSANPKEARIVTSALVRIDGRDVQKVEH-----LADPGIEIPQEATNVHGI 61 Query: 66 T-----------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 T +E LKD + +I + + E I +NA FD+ + + Sbjct: 62 TTEKARAEGRPHEEVLKD--TIEAIKAAW-----EDGLTLIVYNAAFDLTVLRSLTGDFT 114 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153 P+ +ID +S RK + L ++C+ YG+ + Sbjct: 115 VTGPVYDPYVIDRVSDKWRK---GKRTLGAVCEHYGVELG 151 >gi|220907840|ref|YP_002483151.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7425] gi|219864451|gb|ACL44790.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7425] Length = 164 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 12/165 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + + +G V + + + + + +CP + E +HGI Sbjct: 5 VAIDFETA--NRAKESACAVGLVRVENLQIVQKAYYL-ICPP--QPHFEFTHIHGIRWTD 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+F ++SE ++IA HNA FD ++A P I T+ Sbjct: 60 VAAQPTFGDLWSELHPLI--AGTDFIAAHNAGFDRSVLHACCNSYGI-PRPAQNFICTVQ 116 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +ARR L +C+ G+ + H H AL D+ + + I Sbjct: 117 LARRTWSLYPTKLPDVCRFLGLELDH---HHALSDAEACAQIVIA 158 >gi|170758900|ref|YP_001785582.1| DNA polymerase III subunit epsilon [Clostridium botulinum A3 str. Loch Maree] gi|169405889|gb|ACA54300.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium botulinum A3 str. Loch Maree] Length = 309 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 10/169 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + IG V + D + + P + P + +HGI Sbjct: 1 MNFVAIDFETA--NEKRNSPCSIGIVVVKDGEIVEKV-HYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D+ F I+ + +FN N AHNA FD+ + L+ N + I T Sbjct: 58 PRMVQDELEFDKIWGKIKHYFN--NNLVTAHNASFDISVLRNTLKLYN-IKMPSFDYICT 114 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ + + N LN++ G H H AL D+ S++ + + Sbjct: 115 MKLSKNFYSNIDNVRLNTVNNFLGYKFKH---HDALADAMACSNILLNI 160 >gi|153834777|ref|ZP_01987444.1| gp41 [Vibrio harveyi HY01] gi|148868812|gb|EDL67880.1| gp41 [Vibrio harveyi HY01] Length = 218 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 8/105 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D ETTGL S + I+E A+ + + + L +A +HGIT+E Sbjct: 20 AIIIDTETTGLGS-DAEIVEFTAI----CADSGKVIVNELVKPTCSIPADATAIHGITNE 74 Query: 69 FLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 +KD P F +FS F N + I +N+ FD I L + Sbjct: 75 DVKDAPDFHLVFSNHFLPLLNGR--PIIIYNSDFDTRLIIQSLDK 117 >gi|253572229|ref|ZP_04849632.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6] gi|298386580|ref|ZP_06996136.1| exonuclease [Bacteroides sp. 1_1_14] gi|251838004|gb|EES66092.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6] gi|298260957|gb|EFI03825.1| exonuclease [Bacteroides sp. 1_1_14] Length = 259 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITD 67 + FD+ETTG + DRI+EI +++ + ++ +T ++ N + PEA +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMRI----NPEMHIPEASSAVHGIYD 65 Query: 68 EFLKDKPSFSSI 79 + D P+F + Sbjct: 66 ADVADCPTFKEV 77 >gi|88797051|ref|ZP_01112641.1| DNA polymerase III subunit epsilon [Reinekea sp. MED297] gi|88779920|gb|EAR11105.1| DNA polymerase III subunit epsilon [Reinekea sp. MED297] Length = 236 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIETTGL+++ D II IG V T + +L R + E++ +H IT Sbjct: 49 VAVDIETTGLNAEQDDIISIGLVPFTAQRITLAKARHWLV-RTRNLTSESVVVHRITHSD 107 Query: 70 LKDKPSFSSIFSE 82 + P ++ SE Sbjct: 108 IAQAPPLRAVLSE 120 >gi|260753544|ref|YP_003226437.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552907|gb|ACV75853.1| Exonuclease RNase T and DNA polymerase III [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 297 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 10/102 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-----SPEALKLHG 64 +V D+ETTGLD + D IIE+ A+ +Y F V G + +PE + G Sbjct: 44 LVVDVETTGLDPQRDEIIEL-AMTPFNYGLDGTIFSVGDSFQGLRQPSKPIAPEITAITG 102 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 IT+E + + + F + IAHNA FD F+ Sbjct: 103 ITNEMVAGQ----IVDPAAVASFAAPASLVIAHNAAFDRRFL 140 >gi|325479508|gb|EGC82604.1| conserved domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 301 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 28/124 (22%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +IV DIETTGLDS D+++ +G + L++ +K+ +L +N E +L I ++ Sbjct: 17 EIVLDIETTGLDSSVDKLVLLGII-LVENNKS------YLVQYFAENDLEEKRLLDIYEK 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127 + +K I +N FD+ F+N L R N P+ P R ID L Sbjct: 70 IIPNKT-------------------IITYNGDTFDIPFLNNRLIRNNMLPVFP-RSIDLL 109 Query: 128 SIAR 131 + + Sbjct: 110 KVIK 113 >gi|325125846|gb|ADY85176.1| DNA polymerase III, epsilon subunit [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 286 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 26/175 (14%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG +II+IGA+++ D +T F ++ P + N + L GI++ Sbjct: 35 VFDLETTG-----KKIIQIGALKVRD-DQTVAKFSTYVNPLEKINDYVS-HLTGISNYQT 87 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSI 129 P + +F DF + + HN FD + N P+ + +DTL + Sbjct: 88 DAAPLIDEVMPDFLDFVGDDT--LVGHNILSFDCNVLAD-----NGYPVANPK-LDTLLL 139 Query: 130 ARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 A P S L++L + YGI I + H A+ D + VY K+ G Sbjct: 140 ANSYKKRGLFADPISNVRLSTLKEYYGINI---NSHIAISDCITNNIVYQKLRDG 191 >gi|255324551|ref|ZP_05365668.1| DNA polymerase III subunit epsilon [Corynebacterium tuberculostearicum SK141] gi|255298457|gb|EET77757.1| DNA polymerase III subunit epsilon [Corynebacterium tuberculostearicum SK141] Length = 223 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 29/160 (18%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R + FD+ETT + K RI+ V + D K L G + EA +HGI Sbjct: 7 RMLAFDLETTSANPKEARIVTSALVRIDGRDVQKVEH-----LADPGIEIPQEATNVHGI 61 Query: 66 T-----------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 T +E LKD + +I + + E I +NA FD+ + + Sbjct: 62 TTEKARAEGRPHEEVLKD--TVEAIKAAW-----EDGLTLIVYNAAFDLTVLRSLTGDFT 114 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITIS 153 P+ +ID +S RK + L ++C+ YG+ + Sbjct: 115 VTGPVYDPYVIDRVSDKWRK---GKRTLGAVCEHYGVELG 151 >gi|327198232|ref|YP_004306808.1| putative DNA polymerase [Pseudomonas phage KPP10] gi|297591758|dbj|BAJ09178.1| putative DNA polymerase [Pseudomonas phage KPP10] Length = 305 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 95 IAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSL 144 +AHN KFD+ INA L + + P P +IIDT IA++ N L SL Sbjct: 132 VAHNGRKFDLPTINAHLVKHDILPPSPYKIIDTCDIAKKVFKFPSNSLKSL 182 >gi|167042103|gb|ABZ06837.1| hypothetical protein ALOHA_HF4000ANIW93E5ctg6g5 [uncultured marine crenarchaeote HF4000_ANIW93E5] Length = 182 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +N ++ FDIETTG+DS+ D++I I V LD+ Q+ + P + LK Sbjct: 8 RNGLQLFYFDIETTGIDSEKDKVITIQFVN-LDFWNPQMAAQITILPEWESSEENILK 64 >gi|153832837|ref|ZP_01985504.1| gp41 [Vibrio harveyi HY01] gi|148870971|gb|EDL69861.1| gp41 [Vibrio harveyi HY01] Length = 207 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 8/105 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D ETTGL S + I+E A+ + + + L +A +HGIT+E Sbjct: 9 AIIIDTETTGLGS-DAEIVEFTAI----CADSGKVIVNELVKPTCSIPADATAIHGITNE 63 Query: 69 FLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 +KD P F +FS F N + I +N+ FD I L + Sbjct: 64 DVKDAPDFHLVFSNHFLPLLNGRPI--IIYNSDFDTRLIIQSLDK 106 >gi|153939051|ref|YP_001391011.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum F str. Langeland] gi|152934947|gb|ABS40445.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum F str. Langeland] gi|295319069|gb|ADF99446.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum F str. 230613] Length = 195 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 25/134 (18%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF----QVFLCPN------GRKNS 56 M+KI D ETTGL E G + L Y + F +VF N + S Sbjct: 1 MKKIFIDTETTGL--------EPGEIIQLTYCVCDINFRGEEKVFFAKNFFFDVDYIEES 52 Query: 57 PEALKLHGITDEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 EA+ HG + E LK F + SE + ++ +IAHN FD F+ AE R+ Sbjct: 53 AEAI--HGFSVEKLKILSKGKKFKDLASEISS--DLKDGIFIAHNVNFDRKFVTAEFNRL 108 Query: 114 NKDPLDPSRIIDTL 127 N P T+ Sbjct: 109 NDMNWIPKEFFCTM 122 >gi|331677520|ref|ZP_08378195.1| ribonuclease T [Escherichia coli H591] gi|331073980|gb|EGI45300.1| ribonuclease T [Escherichia coli H591] Length = 146 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 95 IAHNAKFDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152 +AHNA FD F+ A +R + ++P P DT ++A + L+ C+ G+ Sbjct: 49 VAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLA--LGQTVLSKACQTAGMDF 106 Query: 153 SHRSKHGALLDSHLLSDVYIKMM 175 H AL D+ + ++ +++ Sbjct: 107 DSTQAHSALYDTERTAVLFCEIV 129 >gi|260102518|ref|ZP_05752755.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus helveticus DSM 20075] gi|260083660|gb|EEW67780.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus helveticus DSM 20075] gi|328461804|gb|EGF34034.1| DNA polymerase III alpha chain [Lactobacillus helveticus MTCC 5463] Length = 177 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++H IT + +K+ P+ + ++ + + + AHNA+FD + L R N + + Sbjct: 50 IQVHQITADDVKNAPTMAEVWPKIKGLY-QPGMLVAAHNARFDTNVMRQSLARYNIE--E 106 Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +IDTL+ ++ P N L+++ + + H H AL DS + + I Sbjct: 107 PHYLVIDTLATSKLFEPELPNHKLDTVSDALDVELWHH--HNALSDSEACARILI 159 >gi|255524855|ref|ZP_05391804.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] gi|255511425|gb|EET87716.1| Exonuclease RNase T and DNA polymerase III [Clostridium carboxidivorans P7] Length = 306 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 11/128 (8%) Query: 50 PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI--N 107 P + P + +HGI ++++P F ++ + +F+ IAHNA FD+ + Sbjct: 41 PKEMRFMPINIGIHGIRPAVVENEPEFDKVWEKIKHYFDGNLV--IAHNASFDISVLRKT 98 Query: 108 AELQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHL 166 AEL I+ L + I T+ +++ + N LN++ G H H AL D+ Sbjct: 99 AELYDID---LPKFKYICTMKLSKNFYRGIENAKLNTVNDFLGYEFKH---HDALYDALA 152 Query: 167 LSDVYIKM 174 S++ + + Sbjct: 153 CSNILLNI 160 >gi|94502355|ref|ZP_01308822.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451087|gb|EAT14045.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 511 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 12/117 (10%) Query: 10 IVFDIETTGLDSKND------RIIEIGAVELLDYSKTNRTFQVF------LCPNGRKNSP 57 I+FD ETTGL D II + + L + + Q+ + P G + Sbjct: 3 IIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLIELKDYIIKPEGYEIPF 62 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 + K+HGI+ ++ +K + E ++ +++ I HN FD+ + AE RIN Sbjct: 63 NSTKIHGISTKYAIEKGIKINFVLEEFNLIIKKSNFLIGHNVFFDIKIVCAEFIRIN 119 >gi|297622496|ref|YP_003703930.1| exonuclease RNase T and DNA polymerase III [Truepera radiovictrix DSM 17093] gi|297163676|gb|ADI13387.1| Exonuclease RNase T and DNA polymerase III [Truepera radiovictrix DSM 17093] Length = 224 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 12/160 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL + D + +G V L+ + ++ ++ +HG+TD+ Sbjct: 43 VAVDLETTGLRPRWDAPLSVGWV-LVRAGAIELATARYAVLRAKREVAQSATVHGLTDDA 101 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D +++ +E +AH+A ++ F++ + PL R++DTL++ Sbjct: 102 VADGEDAAAVLAEL--LAVLAGRVLVAHHAAIELRFLDRLCREHFGGPL-LVRVVDTLAL 158 Query: 130 ARR---KHPSSRND---LNSLCKRYGITISHRSKHGALLD 163 A R +H + + L+++ RYG + + H AL D Sbjct: 159 AARSAERHGAVDENALRLHAVRARYG--LPRYAAHSALSD 196 >gi|311741087|ref|ZP_07714912.1| DNA polymerase III epsilon subunit [Corynebacterium pseudogenitalium ATCC 33035] gi|311303889|gb|EFQ79967.1| DNA polymerase III epsilon subunit [Corynebacterium pseudogenitalium ATCC 33035] Length = 432 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 11/100 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN---GRKNSPEALKLHGIT 66 + ++TTG+ RI+ I A+ D + + F L P+ G ++ LHG++ Sbjct: 56 VALTLQTTGIHPSTGRIVTIDAIAFNDAGEQGQLFHAVLKPDIDAGPRH------LHGLS 109 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 ++ P+F I + + I H+ + GF+ Sbjct: 110 TTDIEQAPAFGKILKSLDRLIDGRT--LIVHDLPYTWGFL 147 >gi|145588723|ref|YP_001155320.1| DNA polymerase III subunit epsilon [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047129|gb|ABP33756.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 218 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 37/55 (67%), Gaps = 2/55 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D ETTGL+ D+II IGAV+++ + T+ ++ + P+ ++ S E++K+H Sbjct: 43 VVIDCETTGLNVAQDQIISIGAVKIVGNQLITSERLELLVKPD-KEVSAESVKIH 96 >gi|9630507|ref|NP_046936.1| gp41 [Enterobacteria phage N15] gi|3192726|gb|AAC19079.1| gp41 [Enterobacteria phage N15] Length = 304 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 23/144 (15%) Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD-------------- 102 PE +++ IT+E + P++ +F + ++ +W+A N+ FD Sbjct: 63 PEVTEINHITNEMVASAPAWCDVFPKVLAIISKH--KWLAWNSGFDARMLEQTCLNTIFL 120 Query: 103 ---VGFINAELQRINKDPLDPSRIIDT-LSIARRKHPS-SRNDLNSLCKRYGITISHRSK 157 ++ A + RI+ +D + DT KH + R L R+G+ + Sbjct: 121 NKNAYYVTAMVSRIHTSHIDAKAVYDTWYGEYDAKHQAFKRQSLTIAAARHGVLL--EGA 178 Query: 158 HGALLDSHLLSDVYIKMMVGGSQI 181 H AL D ++ V K+ QI Sbjct: 179 HRALADCKMVLAVLQKVCAPVPQI 202 >gi|77412699|ref|ZP_00788952.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] gi|77161250|gb|EAO72308.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] Length = 240 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 20/105 (19%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-----------------G 52 +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G Sbjct: 131 VVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDPGHPLSAFTTELTGITDDPG 189 Query: 53 RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAH 97 S +L GITD ++ + EF +F Q +AH Sbjct: 190 HPLSAFTTELTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAH 232 >gi|332148536|dbj|BAK20117.1| DNA polymerase III PolC [Bacillus amyloliquefaciens] gi|332148540|dbj|BAK20119.1| DNA polymerase III PolC [Bacillus amyloliquefaciens] gi|332148542|dbj|BAK20120.1| DNA polymerase III PolC [Bacillus amyloliquefaciens] gi|332148544|dbj|BAK20121.1| DNA polymerase III PolC [Bacillus amyloliquefaciens] gi|332148550|dbj|BAK20124.1| DNA polymerase III PolC [Bacillus amyloliquefaciens] Length = 238 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL +AR +P +N LN+LCK++ I ++ H A+ D+ + +KM+ ++ Sbjct: 9 VIDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRAVFDAEATGYLLLKMLKDAAE 65 >gi|329667930|gb|AEB93878.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii DPC 6026] Length = 320 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL DRI E+G ++ + + + TF ++ P+ K KL+GI + Sbjct: 35 LIDVETTGLSPYRDRITEMGGLK-VRHGEVVATFSELVKFPDSNKVPAFITKLNGIDEAT 93 Query: 70 LKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +++K P +I ++ +F + +N FD+ F+ ++ + L+ + +D Sbjct: 94 IEEKGLPVQEAI-KKYREFIGSDPI--VGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDVY 149 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P +++ C + + I+ +H L D Sbjct: 150 RLARSFYPQEQHNRLLDCM-HRLDIAETQEHRGLDDC 185 >gi|295103993|emb|CBL01537.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Faecalibacterium prausnitzii SL3/3] Length = 330 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 21/156 (13%) Query: 26 IIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFL-KDKPSFSSIFSEF 83 I+EIGAV++ + + TF + L P RK K+ G+T L K +P + Sbjct: 34 IVEIGAVKIDEDANVLDTFSIHLRPRIFRKLQHHIAKVTGLTQADLDKGEPIVQGL---- 89 Query: 84 WDFFNEQNAEWIAHNAKF------DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS 137 + +W +A+F DV + L N D P+ D + R+HP Sbjct: 90 -----RRFMQWCGPDAEFAEWGLDDVPVLKQNLFLCNLDESRPTVWYDLQQVFLREHPRK 144 Query: 138 RND---LNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + L S+ R GI + R H AL D+ +DV Sbjct: 145 EGEGMTLESVVTRMGIPM-ERPFHDALSDTLYTADV 179 >gi|254884285|ref|ZP_05256995.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA] gi|254837078|gb|EET17387.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA] Length = 260 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 9/110 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITD 67 + FD+ETTG + DRI+EI +++ + ++ +T ++ N + PE + +HGI D Sbjct: 12 VFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMRI----NPEMHIPEQSSAIHGIYD 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 + D P+F + E + + + N+ +FD+ + E R D Sbjct: 68 ADVADCPTFKEVAKEIAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVD 115 >gi|160882256|ref|ZP_02063259.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483] gi|260173820|ref|ZP_05760232.1| DNA Pol III epsilon chain [Bacteroides sp. D2] gi|299146573|ref|ZP_07039641.1| exonuclease [Bacteroides sp. 3_1_23] gi|315922083|ref|ZP_07918323.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156112345|gb|EDO14090.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483] gi|298517064|gb|EFI40945.1| exonuclease [Bacteroides sp. 3_1_23] gi|313695958|gb|EFS32793.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 259 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68 + FD+ETTG + DRI+EI +++ Y N + L N + PEA +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKV--YPNGNEEAKT-LRINPEMHIPEASSAIHGIYDA 66 Query: 69 FLKDKPSFSSI 79 + D P+F + Sbjct: 67 DVVDCPTFKEV 77 >gi|16082354|ref|NP_394831.1| hypothetical protein Ta1376 [Thermoplasma acidophilum DSM 1728] gi|10640719|emb|CAC12497.1| hypothetical protein [Thermoplasma acidophilum] Length = 188 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 10/172 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITDE 68 I D ETTGLD +I +GAV Y + F + P+ + AL ++G T E Sbjct: 2 IFIDTETTGLDPTKCSVISVGAVV---YEDPSSRFYMEARPDPDAMIDDGALAVNGFTKE 58 Query: 69 FLKD-KPSFSSIFSEFWDFFNEQNAEWI--AHNAKFDVGFINAELQRINKDPLDPSRIID 125 +L + + + F +++ ++++ +N FD+ F++ E + + R ID Sbjct: 59 YLSSIANAMYDMLTTFTEWYASNSSDYTVAGYNIDFDISFLSQECLMNSVRMIRIDRRID 118 Query: 126 TLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ + R L+ L G+ + R H AL + ++ Y ++ Sbjct: 119 LKNLFETSDLYKGGRKRLDDLLMALGLG-TERKPHNALYGALAEAEAYAMLV 169 >gi|328865534|gb|EGG13920.1| hypothetical protein DFA_11681 [Dictyostelium fasciculatum] Length = 383 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 21/105 (20%) Query: 10 IVFDIETTGL-DSKNDRIIEIGAVELLD----YSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + FD ETTGL S +IIE+ + + D Y K N T + +G A K HG Sbjct: 82 LFFDTETTGLATSTTSQIIELSLINIKDGDSFYRKVNPTIPI---EDG------ATKKHG 132 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAE-------WIAHNAKFD 102 +T++ L P + + E F ++ +AHN KFD Sbjct: 133 MTNQSLAGHPYWEDVEPELIQFLDKYCVGDTPVEIIIVAHNEKFD 177 >gi|319953453|ref|YP_004164720.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237] gi|319422113|gb|ADV49222.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237] Length = 1479 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 19/134 (14%) Query: 10 IVFDIETTGLDSKND----------RIIEIGAVELLDYSKTNRTFQVFLC-PNGRKNSPE 58 ++FD ETTGL + D R I+I A +L D Q +L P+G + Sbjct: 3 LIFDTETTGLPKRWDVPFTDTDNWPRCIQI-AWQLHDDMGNLIEHQDYLVQPDGFNIPYD 61 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRIN- 114 A ++HGI+ + K ++ E FNE A+ + N FD+ + AE R+ Sbjct: 62 AEQIHGISTALAEQKGVPLAVVLE---KFNEAMAKTKFVVGQNVGFDLNIMGAEFHRMGV 118 Query: 115 KDPLDPSRIIDTLS 128 ++PL ++DT + Sbjct: 119 ENPLQELPVLDTCT 132 >gi|226949657|ref|YP_002804748.1| exonuclease family protein [Clostridium botulinum A2 str. Kyoto] gi|226843422|gb|ACO86088.1| exonuclease family protein [Clostridium botulinum A2 str. Kyoto] Length = 253 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 19/242 (7%) Query: 7 MRKIVFDIE-TTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEA 59 M I+FD+E G ++K + II+IGA++L + T TF + P N +P Sbjct: 1 MNYIIFDLEFNQGYNNKIEIKCPFEIIQIGAIKLNENFTTIDTFNALIKPEIYSNLNPFV 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPL 118 L +T + L F ++ +F +F N+ +N I F N ++ + + Sbjct: 61 KNLTNLTMDSLNKANPFREVYKDFLEFLNKNRNIFCIWGMTDMKELFRNIVYYELDTESM 120 Query: 119 DPSRIIDTLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P I+ + + +P S N L++ + + IT + H A D+ ++V+ K+ Sbjct: 121 -PKEYINVQAYTGKYLNYPKSINVGLSNAVELFHIT-KNNDFHNAFNDAFYTAEVFKKIY 178 Query: 176 VGGSQINFGFKTNEDRFF--KEEKKTVPNISLLKRDKPLFTRITKEELDEHD--KTIQTL 231 + TN + K K + +SL K+ + +F TK L E D K T+ Sbjct: 179 SEKIKTKIYKPTNNSTTYRNKNTKTRIDTVSLFKQFEKMFN--TKLTLQEQDMIKLAYTM 236 Query: 232 GK 233 GK Sbjct: 237 GK 238 >gi|297814530|ref|XP_002875148.1| hypothetical protein ARALYDRAFT_904512 [Arabidopsis lyrata subsp. lyrata] gi|297320986|gb|EFH51407.1| hypothetical protein ARALYDRAFT_904512 [Arabidopsis lyrata subsp. lyrata] Length = 455 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRII 124 T +LK++P+ S ++ ++ N WI H+ K D + E + I K P P II Sbjct: 249 TPAWLKNEPTLSESYNRV--YYMLHNKTWIGHDLRKSDFPMLEKECKHIGKSPPRPKEII 306 Query: 125 DTL 127 DT+ Sbjct: 307 DTV 309 >gi|59713121|ref|YP_205897.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114] gi|59481222|gb|AAW87009.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] Length = 238 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD+ + II IG V R Q + ++ +HGIT Sbjct: 49 VALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVKAQDSLEENSVVIHGITHSD 108 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 L+ P I + D + + H + + F +A L+ I + + P ++DT+ Sbjct: 109 LQGAPDLRRILEQVLDALAGKVV--VVHYRRIERDFFDANLRSLIGEGIVFP--VVDTMQ 164 Query: 129 I 129 I Sbjct: 165 I 165 >gi|237718360|ref|ZP_04548841.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4] gi|229452293|gb|EEO58084.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4] Length = 243 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDE 68 + FD+ETTG + DRI+EI +++ Y N + L N + PEA +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKV--YPNGNEEAKT-LRINPEMHIPEASSAIHGIYDA 66 Query: 69 FLKDKPSFSSI 79 + D P+F + Sbjct: 67 DVVDCPTFKEV 77 >gi|288800983|ref|ZP_06406439.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] gi|288331917|gb|EFC70399.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] Length = 208 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 12/115 (10%) Query: 10 IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPE 58 + FD ETTG+ D+ N R+++I + + + Q + P G + Sbjct: 17 LFFDTETTGIPNDYNAPSEDTNNWPRLVQIAWLITRENGDIYKELQSRIISPEGFRIPQS 76 Query: 59 ALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 ++ +HGIT E ++D + ++F + + + + HN FD+ + AEL R Sbjct: 77 SINIHGITQEKAVEDGEDLCDVLNDFVNDVDYNDVILVGHNIYFDIHVVTAELIR 131 >gi|269140407|ref|YP_003297108.1| Orf81 bacteriophage 186 [Edwardsiella tarda EIB202] gi|267986068|gb|ACY85897.1| Orf81 bacteriophage 186 [Edwardsiella tarda EIB202] Length = 199 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 9/100 (9%) Query: 5 NKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N +RK + D ETTG+ EI + ++D T F + P + +H Sbjct: 25 NWLRKCNILDTETTGVKEN----AEIVSAAIIDQDGT-VLFHSLIKP-VNPITEITTAIH 78 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV 103 GIT+E + +KP+++ + E N A + +NA+FD+ Sbjct: 79 GITNEMVAEKPTWAEVHDEIARILN--TAPLVVYNAQFDM 116 >gi|255534927|ref|YP_003095298.1| DNA polymerase III subunit epsilon [Flavobacteriaceae bacterium 3519-10] gi|255341123|gb|ACU07236.1| DNA polymerase III subunit epsilon [Flavobacteriaceae bacterium 3519-10] Length = 185 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 8/109 (7%) Query: 50 PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 PN P + +HGIT ++D P+F I+ E + +AHNA FD G + + Sbjct: 43 PNYPYFHPRNIDVHGITPRDVQDSPTFDEIWHEAENLM--YGNLMVAHNAGFDAGVLRSC 100 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHR 155 L K L+ + ++SIA++ + + L SL +++ I+ H Sbjct: 101 LDYYGFYKPKLN---YLCSISIAKKSWKNLPKYGLKSLAEQHQISFKHH 146 >gi|256022684|ref|ZP_05436549.1| ribonuclease T [Escherichia sp. 4_1_40B] Length = 130 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 95 IAHNAKFDVGFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI 152 +AHNA FD F+ A +R + ++P P DT ++A + L+ C+ G+ Sbjct: 33 VAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGL--ALGQTVLSKACQTAGMDF 90 Query: 153 SHRSKHGALLDSHLLSDVYIKMM 175 H AL D+ + ++ +++ Sbjct: 91 DSTQAHSALYDTERTAVLFCEIV 113 >gi|150005410|ref|YP_001300154.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482] gi|212694908|ref|ZP_03303036.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855] gi|237727134|ref|ZP_04557615.1| DNA Pol III epsilon chain [Bacteroides sp. D4] gi|265750418|ref|ZP_06086481.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA] gi|294777188|ref|ZP_06742645.1| exonuclease [Bacteroides vulgatus PC510] gi|319640629|ref|ZP_07995346.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A] gi|149933834|gb|ABR40532.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482] gi|212662468|gb|EEB23042.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855] gi|229433990|gb|EEO44067.1| DNA Pol III epsilon chain [Bacteroides dorei 5_1_36/D4] gi|263237314|gb|EEZ22764.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA] gi|294449057|gb|EFG17600.1| exonuclease [Bacteroides vulgatus PC510] gi|317387750|gb|EFV68612.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A] Length = 258 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 9/110 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPE-ALKLHGITD 67 + FD+ETTG + DRI+EI +++ + ++ +T ++ N + PE + +HGI D Sbjct: 10 VFFDLETTGTNINTDRIVEICYLKVYPNGNEETKTMRI----NPEMHIPEQSSAIHGIYD 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 + D P+F + E + + + N+ +FD+ + E R D Sbjct: 66 ADVADCPTFKEVAKEIAR--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVD 113 >gi|323144276|ref|ZP_08078898.1| exonuclease [Succinatimonas hippei YIT 12066] gi|322415946|gb|EFY06658.1| exonuclease [Succinatimonas hippei YIT 12066] Length = 232 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 15/171 (8%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 D ETTGLD D I+ +G V++ +D+S F F+ + S A+ H IT Sbjct: 50 LDFETTGLDFNEDLILSMGWVDINRGEIDFSS---GFHTFINIADKVKSHSAVINH-ITP 105 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRIIDT 126 E L S + ++ + + I H A + F++ L+ KDP L P +DT Sbjct: 106 EMLLHGVSLNEALNQLIEHI--KGRIIICHAAVIEKTFLSKALEL--KDPALLPLIFLDT 161 Query: 127 LSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L + + H + NDL R + H A DS ++V++ + Sbjct: 162 LLLEKSFSTHTGNVNDLRLSSIRRRRKLPAYCAHNAFADSVATAEVFLAQV 212 >gi|270160326|ref|ZP_06188980.1| exonuclease/polymerase-like protein [Legionella longbeachae D-4968] gi|308051563|ref|YP_003915137.1| putative exonuclease [Legionella longbeachae NSW150] gi|269987175|gb|EEZ93432.1| exonuclease/polymerase-like protein [Legionella longbeachae D-4968] gi|288859988|emb|CBJ13980.1| putative exonuclease [Legionella longbeachae NSW150] Length = 301 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 20/110 (18%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNR--------TFQVFLCPNGRKNSPEALKL 62 + D+ET G+D+ IIEIG +L +S +N T+ P G+ PE K+ Sbjct: 41 IIDLETMGMDATQHEIIEIG---MLSFSFSNEDGILEIKHTYNELNDP-GKPIPPEITKI 96 Query: 63 HGITDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 GI +E + K +++ +F +++ I HNA+FD F+ ELQ Sbjct: 97 TGIRNEDVSGKAINWTFVFQVL-----KESHLIICHNAQFDRNFL--ELQ 139 >gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902] gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 879 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 28/138 (20%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD ETTGLD+K +I+ N F V L N E + L Sbjct: 319 IAFDTETTGLDTKEAKIVGFSFC-----MNENEAFYVPLTHN-YLGVGEQISLQSA---- 368 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 K + IF+ F I HN K+D I N D P + DT+ + Sbjct: 369 ---KKAIEVIFNHF----------VIGHNLKYDFKIIQN-----NFDLNLPQKYADTMIL 410 Query: 130 ARRKHPSSRNDLNSLCKR 147 A K+PS R +++ L R Sbjct: 411 AWLKNPSLRVNMDDLALR 428 >gi|258624472|ref|ZP_05719419.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus VM603] gi|258583319|gb|EEW08121.1| DNA polymerase III, epsilon subunit, putative [Vibrio mimicus VM603] Length = 233 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 18/168 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL+++ D I+ IG V Q +L + ++ +HGIT Sbjct: 45 VALDFETTGLNAQQDAILSIGLVPFNTQRIALNQAQYWLVQPTKPLEEGSVVIHGITHSE 104 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ + SE +D + +AH + F+ + + ++ IIDTL I Sbjct: 105 LRHAQEPEVVLSELFDALRGKIV--VAHFRHIEREFLRQATLNLWDEAVE-FPIIDTLEI 161 Query: 130 ARRKHPSSRNDLNSLCK-------------RYGITISHRSKHGALLDS 164 + R+ L RYG+ S H AL D+ Sbjct: 162 EHYVQNAQRSLWQRLLSRPLNSVRLGQSRLRYGLPA--YSPHHALTDA 207 >gi|148979109|ref|ZP_01815317.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] gi|145961975|gb|EDK27264.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] Length = 238 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 5/121 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL+ D II IG V R + + +K E++ +HGIT Sbjct: 49 LALDFETTGLNPSKDGIITIGLVPFTLNRIYLRQARHWTLRPRQKLEEESVVIHGITHND 108 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRIIDTLS 128 + D P + E + H + + F+N L+ R+N+ P ++DTL Sbjct: 109 IIDAPDLDEVLDEVLQAMAGHIP--VVHYRRIERDFLNNALKVRLNEGIEFP--VLDTLE 164 Query: 129 I 129 I Sbjct: 165 I 165 >gi|91216678|ref|ZP_01253643.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755] gi|91185147|gb|EAS71525.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755] Length = 1452 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 13/131 (9%) Query: 10 IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 I+FD ETTGL D+ N R I+I ++ + + P G +A Sbjct: 3 IIFDTETTGLPKRWNAPITDTDNWPRAIQIAWQVHDEWGNLVKAKDYLIRPEGFDIPYDA 62 Query: 60 LKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ++HGI+ L+ S + +EF + +E + N FDV + AE R + L Sbjct: 63 ERIHGISTALALQKGESLDMVLAEFNEALSESKF-VVGQNVGFDVNVMGAEFHRAQLESL 121 Query: 119 DPSR-IIDTLS 128 S ++DT + Sbjct: 122 MASMPVLDTCT 132 >gi|297814532|ref|XP_002875149.1| hypothetical protein ARALYDRAFT_346764 [Arabidopsis lyrata subsp. lyrata] gi|297320987|gb|EFH51408.1| hypothetical protein ARALYDRAFT_346764 [Arabidopsis lyrata subsp. lyrata] Length = 467 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRII 124 T +LK++P+ S ++ + + N WI H+ K D + E + I K P P II Sbjct: 287 TPAWLKNEPTLSESYNRVYYMLH--NKTWIGHDLRKSDFPMLEKECKHIGKSPPRPKEII 344 Query: 125 DTL 127 DT+ Sbjct: 345 DTV 347 >gi|42519676|ref|NP_965606.1| hypothetical protein LJ0649 [Lactobacillus johnsonii NCC 533] gi|41583965|gb|AAS09572.1| hypothetical protein LJ_0649 [Lactobacillus johnsonii NCC 533] Length = 320 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL DRI E+G ++ + + + TF ++ P+ K KL+GI + Sbjct: 35 LIDVETTGLSPYRDRITEMGGLK-VRHGEVVATFSELVKFPDSNKVPAFITKLNGIDETT 93 Query: 70 LKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +++K P +I ++ +F + +N FD+ F+ ++ + L+ + +D Sbjct: 94 IEEKGLPVQEAI-KKYREFIGSDPI--VGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDVY 149 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P +++ C + + I+ +H L D Sbjct: 150 RLARSFYPQEQHNRLLDC-MHRLDIAETQEHRGLDDC 185 >gi|90424784|ref|YP_533154.1| exonuclease [Rhodopseudomonas palustris BisB18] gi|90106798|gb|ABD88835.1| Exonuclease [Rhodopseudomonas palustris BisB18] Length = 314 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 K+HG++ +KD F + SEF + Q+ +AHNA+FDV + A L Sbjct: 52 KVHGLSPSEVKDAQEFPEVISEFLS--DIQSGLLLAHNAQFDVDVLCATL 99 >gi|297814534|ref|XP_002875150.1| hypothetical protein ARALYDRAFT_904518 [Arabidopsis lyrata subsp. lyrata] gi|297320988|gb|EFH51409.1| hypothetical protein ARALYDRAFT_904518 [Arabidopsis lyrata subsp. lyrata] Length = 493 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRII 124 T +LK++P+ S ++ + + N WI H+ K D + E + I K P P II Sbjct: 287 TPAWLKNEPTLSESYNRVYYMLH--NKTWIGHDLRKSDFPMLEKECKHIGKSPPRPKEII 344 Query: 125 DTL 127 DT+ Sbjct: 345 DTV 347 >gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221] gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221] gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3] Length = 879 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 28/138 (20%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I FD ETTGLD+K +I+ N F V L N E + L Sbjct: 319 IAFDTETTGLDTKEAKIVGFSFC-----MNENEAFYVPLTHN-YLGVGEQISLQSA---- 368 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 K + IF+ F I HN K+D I N D P + DT+ + Sbjct: 369 ---KKAIEVIFNHF----------VIGHNLKYDFKIIQN-----NFDLNLPQKYADTMIL 410 Query: 130 ARRKHPSSRNDLNSLCKR 147 A K+PS R +++ L R Sbjct: 411 AWLKNPSLRVNMDDLALR 428 >gi|120553834|ref|YP_958185.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8] gi|120323683|gb|ABM17998.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8] Length = 235 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 4/108 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ R IV D+ETTGL++ D +I IGAV + N F + L + E + +H Sbjct: 37 SRSRLIVLDLETTGLNASKDEVIAIGAVAIEGGVIHLNDQFDLILR-RPELDIRETVLIH 95 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 GI E L ++ N +A+++ FD F+ L+ Sbjct: 96 GIGPEALTQGYETQDALLYLLEWMNGDPI--LAYHSAFDQKFLEKTLK 141 >gi|170752204|ref|YP_001783349.1| exonuclease RNase T and DNA polymerase III [Methylobacterium radiotolerans JCM 2831] gi|170659331|gb|ACB28381.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium radiotolerans JCM 2831] Length = 298 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN----GRKNSP-EALKLHG 64 +V D+ETTG D D +IE+G ++ +Y + R ++V N RK P E +L G Sbjct: 42 LVVDVETTGTDFGTDEVIELGILK-FEYGASGRIYRVLDTLNQLQEPRKPIPVEITRLTG 100 Query: 65 ITD 67 ITD Sbjct: 101 ITD 103 >gi|269963087|ref|ZP_06177423.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832219|gb|EEZ86342.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 217 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 8/105 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D ETTGL S + I+E A+ + + + L +A +HGIT+E Sbjct: 19 AIIIDTETTGLGS-DAEIVEFTAI----CADSGKVIVNELVKPTCSIPADATAIHGITNE 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQR 112 +KD P F +FS F N I +N+ FD I L + Sbjct: 74 DVKDAPDFHLVFSNH--FLPXLNGRLIIIYNSDFDTRLIIQSLDK 116 >gi|255292918|dbj|BAH90017.1| DNA polymerase III epsilon subunit [uncultured bacterium] gi|255293172|dbj|BAH90263.1| DNA polymerase III epsilon subunit [uncultured bacterium] Length = 297 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 12/104 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS------KTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTGLD + D IIE+ A+ +Y +FQ P+ + +PE + Sbjct: 44 LVVDVETTGLDPQRDEIIEL-AMTPFNYGLDGTIFSVGDSFQRLRQPS-KPIAPEITAIT 101 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 GIT+E + + + F + IAHNA FD F+ Sbjct: 102 GITNEMVAGQ----IVDPAAVASFAAPASLVIAHNAAFDRRFLE 141 >gi|296272299|ref|YP_003654930.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM 7299] gi|296098846|gb|ADG94796.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM 7299] Length = 209 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 13/172 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL+ K D I+ IGAV ++ +K ++TF +++ P+ S +++ +H I Sbjct: 32 VCLDCETTGLNPKKDEILSIGAV-IIKENKVLMSKTFNIYVKPSDNI-STQSILIHRIRP 89 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L++ E F + + + KFD+ I+ ++ L P+ I+ Sbjct: 90 IDLENAIDPEEAIYELLKFIGSR--VIVGYYIKFDIAIISRYTKKYIGIKL-PNSSIEVS 146 Query: 128 SIARRKHPSSRNDLNSLCKRYG-----ITISHRSKHGALLDSHLLSDVYIKM 174 S+ R R+D + ++ + I KH AL D+ + S +++K+ Sbjct: 147 SMYYRTK-KRRSDYEFVDLKFDTIMKELDIPLLGKHDALNDAIMTSMIFLKL 197 >gi|326671136|ref|XP_002663560.2| PREDICTED: hypothetical protein LOC100329499 [Danio rerio] Length = 4494 Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 K+ + +E++KD P+F I E+ +F + +W+ N + F++ L+R KD Sbjct: 3946 FKVKWLYNEYVKDLPAFKGIVPEYPTWFQQFVLQWLDENEDVSMEFMHGALERDKKD 4002 >gi|227889381|ref|ZP_04007186.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii ATCC 33200] gi|227850183|gb|EEJ60269.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii ATCC 33200] Length = 320 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL DRI E+G + + + + TF ++ P+ K KL+GI + Sbjct: 35 LIDVETTGLSPYRDRITEMGGLR-VRHGEVVATFSELVKFPDSNKVPAFITKLNGIDEAT 93 Query: 70 LKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +++K P +I ++ +F + +N FD+ F+ ++ + L+ + +D Sbjct: 94 IEEKGLPVQEAI-KKYREFIGSDPI--VGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDVY 149 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P +++ C + + I+ +H L D Sbjct: 150 RLARSFYPQEQHNRLLDCM-HRLDIAETQEHRGLDDC 185 >gi|313205456|ref|YP_004044113.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter propionicigenes WB4] gi|312444772|gb|ADQ81128.1| Exonuclease RNase T and DNA polymerase III [Paludibacter propionicigenes WB4] Length = 189 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 13/130 (10%) Query: 10 IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 + FD ETTGL D N R++++ + + P G EA Sbjct: 3 LFFDTETTGLPRDWKAPVSDLNNWPRLVQLAYLFFDSNGNKIAGGDFIIKPEGFTIPTEA 62 Query: 60 LKLHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDP 117 ++HGIT E ++ ++ +F NE +AHN FD + AE R N D Sbjct: 63 SRIHGITTERANQEGKPIQTVLRDFQSMINEAQY-LVAHNMSFDEKIVGAEFLRNNMPDS 121 Query: 118 LDPSRIIDTL 127 + P R I T+ Sbjct: 122 IAPKRKICTM 131 >gi|240256240|ref|NP_195691.4| exonuclease/ nucleic acid binding [Arabidopsis thaliana] gi|332661722|gb|AEE87122.1| exonuclease/ nucleic acid binding protein [Arabidopsis thaliana] Length = 255 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 6/97 (6%) Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSR 122 GIT + + PSF + + N + W HN + FD I I K +PS Sbjct: 69 GITRAKVTNAPSFEDVAEKIHGLLNGR--IWAGHNIRRFDCVRIKEAFAEIGKAAPEPSG 126 Query: 123 IIDTLSIARRKHPSSRNDLN--SLCKRYGITIS-HRS 156 IID+L + K ++ SL +G+ + HRS Sbjct: 127 IIDSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRS 163 >gi|268320049|ref|YP_003293705.1| hypothetical protein FI9785_1583 [Lactobacillus johnsonii FI9785] gi|262398424|emb|CAX67438.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus johnsonii FI9785] Length = 320 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTGL DRI E+G + + + + TF ++ P+ K KL+GI + Sbjct: 35 LIDVETTGLSPYRDRITEMGGLR-VRHGEVVATFSELVKFPDSNKVPAFITKLNGIDEAT 93 Query: 70 LKDK--PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +++K P +I ++ +F + +N FD+ F+ ++ + L+ + +D Sbjct: 94 IEEKGLPVQEAI-KKYREFIGSDPI--VGYNVNFDLNFVYDLAEKYHLTVLN-NDYVDVY 149 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 +AR +P +++ C + + I+ +H L D Sbjct: 150 RLARSFYPQEQHNRLLDCM-HRLDIAETQEHRGLDDC 185 >gi|331015013|gb|EGH95069.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 222 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 8/115 (6%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +V D+ET+GL+ D+++ IGAV + D + + F+ L K SP L +HG Sbjct: 25 QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKLSPAVL-IHG 83 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + + +F +F ++ + +A FD L R K+ LD Sbjct: 84 LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFD----QHMLARALKESLD 132 >gi|298253384|ref|ZP_06977176.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1] gi|297532779|gb|EFH71665.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1] Length = 261 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG + D I+ V + + T +L + +P+A +++G TDE+L Sbjct: 34 FDTETTGANIGKDAIVSATLVLRNPELAHTGDVVSTWLINPHQPMNPKASEVNGFTDEYL 93 Query: 71 KDKPSFSSIFSEFW----DFFNEQNAEWIAHNAKFDVGFINAELQ 111 K+ EF +N +A+NA FD+ + +L+ Sbjct: 94 KEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLK 138 >gi|153879658|ref|ZP_02004868.1| exonuclease [Beggiatoa sp. PS] gi|152063878|gb|EDN65132.1| exonuclease [Beggiatoa sp. PS] Length = 65 Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D ETTGLD N I+EI ++ K RT L + E + +HGITD+ +K Sbjct: 2 DTETTGLDD-NAEIVEIAIID-----KEERTLINQLVKPTQPIPNEVIGIHGITDDEVKK 55 Query: 73 KPSFSSIF 80 P+F +++ Sbjct: 56 APTFKTVW 63 >gi|90579019|ref|ZP_01234829.1| DNA polymerase III subunit epsilon [Vibrio angustum S14] gi|90439852|gb|EAS65033.1| DNA polymerase III subunit epsilon [Vibrio angustum S14] Length = 249 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 13/125 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF----QVFLCPNGRKNSPEALKLHGI 65 + D ETTGL++ D II +G V NR F Q ++ K +++ +HGI Sbjct: 60 VALDFETTGLNANKDDIISVGLVPF----TINRIFCKQSQHWVVKPKAKLDEDSVIIHGI 115 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRII 124 T ++ P I D + + H + F++ L+ R+N+ P ++ Sbjct: 116 THSDVQTAPDIRRILEAVLDSLAGKVV--VVHYKAIERQFMDKALRVRLNEGIQFP--VV 171 Query: 125 DTLSI 129 DTL++ Sbjct: 172 DTLAL 176 >gi|283782956|ref|YP_003373710.1| exonuclease [Gardnerella vaginalis 409-05] gi|283441223|gb|ADB13689.1| exonuclease [Gardnerella vaginalis 409-05] Length = 259 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG + D I+ V + + T +L + +P+A +++G TDE+L Sbjct: 32 FDTETTGANIGKDAIVSATLVLRNPELAHTGDVVSTWLINPHQPMNPKASEVNGFTDEYL 91 Query: 71 KDKPSFSSIFSEFW----DFFNEQNAEWIAHNAKFDVGFINAELQ 111 K+ EF +N +A+NA FD+ + +L+ Sbjct: 92 KEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLK 136 >gi|197336459|ref|YP_002157302.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11] gi|197317949|gb|ACH67396.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11] Length = 238 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 11/187 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGLD+ + II IG V R Q + ++ +HGIT Sbjct: 49 VALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVKAQDSLEENSVVIHGITHSD 108 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTLS 128 L+ P I + D + + H + + F + L+ I + + P ++DT+ Sbjct: 109 LQGAPDLRRILEQVLDALAGKVV--VVHYRRIERDFFDTNLRSLIGEGIVFP--VVDTMQ 164 Query: 129 I-ARRKHPSSRNDLNSLCKRYGITI---SHRSKHG--ALLDSHLLSDVYIKMMVGGSQIN 182 I + ++ +N L + +I + R ++G + H L+D + +Q+ Sbjct: 165 IEGDYQQEQAKGLINWLKGKRPESIRLANTRLRYGLPSYPPHHALTDAIATAELFQAQVR 224 Query: 183 FGFKTNE 189 + F N+ Sbjct: 225 YHFSAND 231 >gi|302188448|ref|ZP_07265121.1| exonuclease [Pseudomonas syringae pv. syringae 642] Length = 237 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +V D+ET+GL+ D+++ IGAV + D + + F+ L K SP L +HG Sbjct: 40 EQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKVSPAVL-IHG 98 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + + +F +F ++ + +A FD ++ L+ Sbjct: 99 LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALK 143 >gi|53714270|ref|YP_100262.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46] gi|60682326|ref|YP_212470.1| putative DNA polymerase III subunit epsilon [Bacteroides fragilis NCTC 9343] gi|253564786|ref|ZP_04842242.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5] gi|265766238|ref|ZP_06094279.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16] gi|52217135|dbj|BAD49728.1| DNA polymerase III epsilon chain [Bacteroides fragilis YCH46] gi|60493760|emb|CAH08550.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis NCTC 9343] gi|251946251|gb|EES86628.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5] gi|263253906|gb|EEZ25371.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16] gi|301163800|emb|CBW23355.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis 638R] Length = 257 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTG + +DRI+EI +++ Y N + E+ +HGI D Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKV--YPNGNEESKTLRINPEMPIPAESSAVHGIYDAD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 + D P+F + + + + + N+ +FD+ + E R D Sbjct: 68 VADCPTFKEVAKSIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVD 113 >gi|300865844|ref|ZP_07110589.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300336143|emb|CBN55747.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 476 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 F+T + RFF EE+KT N LL R PL R+ E LD+ D +Q Sbjct: 430 LAFQTLQRRFFLEEEKTA-NHQLLYRLHPLMRRVALEHLDKLDMEVQ 475 >gi|319441121|ref|ZP_07990277.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM 44702] Length = 228 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 15/148 (10%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 FD+ETTG D RI+ L+ + ++R L G A +HGIT E+ + Sbjct: 15 FDLETTGPDPLTARIV---TSALITINGSHRDDLEILADPGIPIPEGATAVHGITTEYAR 71 Query: 72 D--KPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +P + +E + + A I +NA +D+ + D + D Sbjct: 72 EHGRP-HDEVLAETIERIRRGWSEGATLIIYNAAYDLTVLRTLEPTFTVD----GPVFDP 126 Query: 127 LSI--ARRKHPSSRNDLNSLCKRYGITI 152 L + A+ ++ L +C+ YG+T+ Sbjct: 127 LVVDKAKDRYRKGGRRLTQVCEHYGVTL 154 >gi|213964467|ref|ZP_03392667.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum SK46] gi|213952660|gb|EEB64042.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum SK46] Length = 226 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 20/128 (15%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FD+ETTG D + +I+ V L + K + + L G + A +HGIT Sbjct: 8 RMLAFDLETTGTDPRTCKIVTSALVRLTEQGKDS---TIMLADPGVEIPQAASDVHGITT 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEW------IAHNAKFDVGFINAELQRINKDPLDPS 121 E K + D A W +A+NA +D+ + ++ DP+ Sbjct: 65 E--KARAEGRPHDEVLADTIAGLKAAWRDGLTVVAYNAAYDLTVLRSQ---------DPN 113 Query: 122 RIIDTLSI 129 +D L + Sbjct: 114 FTVDGLVV 121 >gi|328876923|gb|EGG25286.1| hypothetical protein DFA_03535 [Dictyostelium fasciculatum] Length = 369 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 26/147 (17%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFLCPNGRKNSPEALK 61 K+ +VFD ETTGL+ + D+IIEI + +L+ Y K T + S E+ Sbjct: 140 KLVILVFDTETTGLEFE-DQIIEITFINILNGDSFYGKVKPTVPL---------SSESYC 189 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKD-- 116 HGI+ + L + + S+ + FF + IAHN FD +L ++ KD Sbjct: 190 AHGISLKELDNCLEWESLQGKLDSFFQQYIDHKIVIIAHNVTFD----RYKLWKMVKDQV 245 Query: 117 ---PLDPSRIIDTLSIARRKHPSSRND 140 P D I+++ I P + D Sbjct: 246 HCIPFDKIIFINSIEIFLSFGPFKKKD 272 >gi|153830906|ref|ZP_01983573.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] gi|229515666|ref|ZP_04405125.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] gi|148873606|gb|EDL71741.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] gi|229347435|gb|EEO12395.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] Length = 236 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF----QVFLCPNGRKNSPEALKLHGI 65 + D ETTGL+++ D I+ IG V T R F + +L + E++ HGI Sbjct: 48 VALDFETTGLNAEQDAIVSIGLVPF----TTQRIFLNQARYWLVKPSQPLEEESIVFHGI 103 Query: 66 TDEFLKDKPSFSSIFSEFWDFFN 88 T L+ + + E + N Sbjct: 104 THSELQYAQAPEQVLKELLEALN 126 >gi|89072943|ref|ZP_01159490.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34] gi|89051161|gb|EAR56617.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34] Length = 249 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 13/125 (10%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF----QVFLCPNGRKNSPEALKLHGI 65 + D ETTGL++ D II +G V NR F Q ++ K +++ +HGI Sbjct: 60 VALDFETTGLNANKDDIISVGLVPF----NINRIFCKQSQHWVVKPKAKLDEDSVIIHGI 115 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-RINKDPLDPSRII 124 T ++ P I D + + H + F++ L+ R+N+ P ++ Sbjct: 116 THSDVQTAPDIRRILEAVLDSLAGKVV--VVHYKAIERQFMDKALRVRLNEGIQFP--VV 171 Query: 125 DTLSI 129 DTL++ Sbjct: 172 DTLAL 176 >gi|237785839|ref|YP_002906544.1| DNA polymerase III subunit epsilon [Corynebacterium kroppenstedtii DSM 44385] gi|237758751|gb|ACR18001.1| DNA polymerase III, epsilon subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 236 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 13/149 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTG + RI+ V + S + L G + A ++HGI+ E+ Sbjct: 19 LSFDLETTGTNPLQARIVTSALVSIHGGSANSTE---LLADPGIEIPESASQIHGISTEY 75 Query: 70 LKD--KPSFSSIFSEFWDFFN--EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ +P + ++ E+ I NA +D+ L+ + + + D Sbjct: 76 AREHGEPHDDVLHKTIRAIYDGWERGQTLIVFNAAYDLTI----LRHLEPSFVCSGLVFD 131 Query: 126 TLSIARRKHP--SSRNDLNSLCKRYGITI 152 L + R P + L +L KRYGI + Sbjct: 132 PLVMGRALEPQRTGPRKLGTLVKRYGIQL 160 >gi|160943710|ref|ZP_02090941.1| hypothetical protein FAEPRAM212_01204 [Faecalibacterium prausnitzii M21/2] gi|158444884|gb|EDP21887.1| hypothetical protein FAEPRAM212_01204 [Faecalibacterium prausnitzii M21/2] Length = 330 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 19/155 (12%) Query: 26 IIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84 I+EIGAV++ + + TF + L P RK K+ G+T L F Sbjct: 34 IVEIGAVKIDEDANVLDTFSIHLRPRIFRKLQHHIAKVTGLTQADLDRGEPIVQGLRRF- 92 Query: 85 DFFNEQNAEWIAHNAKF------DVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138 +W +A+F DV + L N D P+ D + R+HP Sbjct: 93 -------MQWCGPDAEFAEWGLDDVPVLKQNLFLCNLDESRPTVWYDLQQVFLREHPRKE 145 Query: 139 ND---LNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + L S+ R G+ + R H AL D+ +DV Sbjct: 146 GEGMTLESVVTRMGVPM-ERPFHDALSDTLYTADV 179 >gi|293372861|ref|ZP_06619235.1| exonuclease [Bacteroides ovatus SD CMC 3f] gi|292632150|gb|EFF50754.1| exonuclease [Bacteroides ovatus SD CMC 3f] Length = 266 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDEFL 70 FD+ETTG + DRI+EI +++ Y N + L N + PEA +HGI D + Sbjct: 19 FDLETTGTNINTDRIVEICYLKV--YPNGNEEAKT-LRINPEMHIPEASSAIHGIYDADV 75 Query: 71 KDKPSFSSI 79 D P+F + Sbjct: 76 VDCPTFKEV 84 >gi|156346891|ref|XP_001621564.1| hypothetical protein NEMVEDRAFT_v1g248663 [Nematostella vectensis] gi|156207642|gb|EDO29464.1| predicted protein [Nematostella vectensis] Length = 460 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 36/196 (18%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++FD ETTGLD+ ND II++ + ++ P G + A ++HGI+ F Sbjct: 157 VMFDTETTGLDTSNDDIIQLACAS----ENGDNLHSRYMFPRGSIDLG-ATRVHGISKAF 211 Query: 70 L-------KDKPSFSSIFS------EFWDFFNEQNAE------WIAHNA-KFDVGFINAE 109 + KD + + S EF F ++ +AH FD + Sbjct: 212 IDGSRVLVKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFRLLINC 271 Query: 110 LQR---INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS--------KH 158 L+R +N+ S ++D++ + R ++ +S K+ ++ H H Sbjct: 272 LKRHNLMNEFISTGSVLLDSVKVVRASKKQEKSPFDSSFKKESLSALHGHLFGVPIDRPH 331 Query: 159 GALLDSHLLSDVYIKM 174 A D+ LS V +K+ Sbjct: 332 DAQADACALSKVLMKI 347 >gi|255010437|ref|ZP_05282563.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis 3_1_12] gi|313148241|ref|ZP_07810434.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12] gi|313137008|gb|EFR54368.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12] Length = 257 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTG + +DRI+EI +++ Y N + E+ +HGI D Sbjct: 10 VFFDLETTGTNINSDRIVEICYLKV--YPNGNEESKTLRINPEMPIPAESSAVHGIFDAD 67 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKD 116 + D P+F + + + + + N+ +FD+ + E R D Sbjct: 68 VADCPTFKEVAKSIAN--DIEGCDLAGFNSNRFDIPVLAEEFLRAGVD 113 >gi|213967758|ref|ZP_03395905.1| exonuclease [Pseudomonas syringae pv. tomato T1] gi|301382395|ref|ZP_07230813.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13] gi|302061212|ref|ZP_07252753.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40] gi|302132416|ref|ZP_07258406.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927534|gb|EEB61082.1| exonuclease [Pseudomonas syringae pv. tomato T1] Length = 237 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 8/115 (6%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +V D+ET+GL+ D+++ IGAV + D + + F+ L K SP L +HG Sbjct: 40 QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKLSPAVL-IHG 98 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + + +F +F ++ + +A FD L R K+ LD Sbjct: 99 LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFD----QHMLARALKESLD 147 >gi|115376299|ref|ZP_01463539.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1] gi|115366724|gb|EAU65719.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1] Length = 935 Score = 36.2 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 15/101 (14%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW--IAHNAKFDVGFINAELQRINKDPL 118 +L GI D L KP F S E E W +AHNA F+ GF+ L I L Sbjct: 14 RLTGIEDAMLAGKPRFGSDLDEL----REALTGWTVVAHNAPFEKGFLPKLLGPIRAPVL 69 Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKH 158 D ++ L HP S + L ++ + G + RS H Sbjct: 70 DSCELLHYL------HPELSSHSLEAMMRWAG--LKPRSTH 102 >gi|289674377|ref|ZP_06495267.1| exonuclease [Pseudomonas syringae pv. syringae FF5] Length = 237 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +V D+ET+GL+ D+++ IGAV + D + + F+ L K SP L +HG Sbjct: 40 EQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVL-IHG 98 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + + +F +F ++ + +A FD ++ L+ Sbjct: 99 LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALK 143 >gi|3080450|emb|CAA18767.1| hypothetical protein [Arabidopsis thaliana] gi|7270965|emb|CAB80644.1| hypothetical protein [Arabidopsis thaliana] Length = 236 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 6/97 (6%) Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSR 122 GIT + + PSF + + N + W HN + FD I I K +PS Sbjct: 69 GITRAKVTNAPSFEDVAEKIHGLLNGRI--WAGHNIRRFDCVRIKEAFAEIGKAAPEPSG 126 Query: 123 IIDTLSIARRKHPSSRNDLN--SLCKRYGITIS-HRS 156 IID+L + K ++ SL +G+ + HRS Sbjct: 127 IIDSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRS 163 >gi|330898819|gb|EGH30238.1| exonuclease [Pseudomonas syringae pv. japonica str. M301072PT] Length = 237 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +V D+ET+GL+ D+++ IGAV + D + + F+ L K SP L +HG Sbjct: 40 EQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVL-IHG 98 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + + +F +F ++ + +A FD ++ L+ Sbjct: 99 LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALK 143 >gi|330938574|gb|EGH42148.1| exonuclease [Pseudomonas syringae pv. pisi str. 1704B] Length = 237 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +V D+ET+GL+ D+++ IGAV + D + + F+ L K SP L +HG Sbjct: 40 EQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVL-IHG 98 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + + +F +F ++ + +A FD ++ L+ Sbjct: 99 LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALK 143 >gi|28867700|ref|NP_790319.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000] gi|28850935|gb|AAO54014.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 237 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 8/115 (6%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +V D+ET+GL+ D+++ IGAV + D + + F+ L K SP L +HG Sbjct: 40 QQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKLSPAVL-IHG 98 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + + +F +F ++ + +A FD L R K+ LD Sbjct: 99 LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFD----QHMLARALKESLD 147 >gi|261369077|ref|ZP_05981960.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum variabile DSM 15176] gi|282568762|gb|EFB74297.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum variabile DSM 15176] Length = 318 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 9/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + DIETTGLD D I++ V +LD ++ P ++ PEA +++ IT E Sbjct: 120 VSIDIETTGLDFNQDEILQ---VSILDIDTGEVLLDSYVKPYFTEDWPEARRVNHITKEM 176 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL--DPSRIIDT 126 + + P + Q + +N FD GF+ N + + D S I Sbjct: 177 VCNAPYIYELLPRLNQVL-AQVKTIVGYNFTGFDNGFLTRYGASFNDETIVEDLSNIFAA 235 Query: 127 L--SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + + +L++ +G + H +L D + Y K Sbjct: 236 IYGEFSPKHGDFKFKNLSTCADYFGYDWGEETAHNSLADCRATAFCYKK 284 >gi|256545132|ref|ZP_05472498.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170] gi|256399173|gb|EEU12784.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170] Length = 305 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 25/109 (22%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTGLD K D+++ +G + DY K + ++ KN E +KL I E + Sbjct: 19 ILDIETTGLDPKIDKLVVLGLI-YFDYKKN----KFYIDQYFSKNDKEEVKLLKIYKEKI 73 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPL 118 QN + I +N FD+ F+N L ++P+ Sbjct: 74 -------------------QNKKLITYNGDIFDLPFLNIRLIENKEEPI 103 >gi|326803355|ref|YP_004321173.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650663|gb|AEA00846.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 173 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 18/159 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD+ETTGL + +II+I AV D K F + P+ R + +L GI+D Sbjct: 14 VAFDLETTGL-GFSSKIIQISAVHFRD-GKEIGAFDQLVNPD-RPIPAKITQLTGISDAD 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI--IDT 126 + P+ + +F F ++ +N+ KFD+ + A +D S + +D Sbjct: 71 VYLSPTIDQVIHDFMAFI--KDLPLAGYNSKKFDIPMLRANTG------IDLSGLPHMDV 122 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDS 164 L +AR + N L ++ YGI H +L DS Sbjct: 123 LEMARLSPIRTPNYKLTTVKAHYGI---QNRAHDSLNDS 158 >gi|66047927|ref|YP_237768.1| exonuclease [Pseudomonas syringae pv. syringae B728a] gi|63258634|gb|AAY39730.1| Exonuclease [Pseudomonas syringae pv. syringae B728a] Length = 237 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +V D+ET+GL+ D+++ IGAV + D + + F+ L K SP L +HG Sbjct: 40 EQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVL-IHG 98 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + + +F +F ++ + +A FD ++ L+ Sbjct: 99 LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALK 143 >gi|304383117|ref|ZP_07365592.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii DSM 16973] gi|304335803|gb|EFM02058.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii DSM 16973] Length = 889 Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 18/157 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGLD D I+++ A+++ + +F VF+ R L I + Sbjct: 504 VVFDTETTGLDVFADDIVQLAAIKVRNGKVVEGSSFNVFI----RTEREIPAMLGDIPNP 559 Query: 69 FLKDKP-----SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 +++ S F++F D+ + + HN ++D + L R ++ + Sbjct: 560 IIEEMKHHECLSPEEAFAQFMDYVADDAV--LGHNVEYDFHILLYNLLRHAPQWVERWKA 617 Query: 124 I---DTLSIARRKHPSSRN-DLNSLCKRYGI--TISH 154 + D+L + R HP ++ L L +R G+ T SH Sbjct: 618 VERFDSLKLIRLLHPRQKSYKLKHLLERLGLEGTNSH 654 >gi|294795062|ref|ZP_06760197.1| exonuclease [Veillonella sp. 3_1_44] gi|294454424|gb|EFG22798.1| exonuclease [Veillonella sp. 3_1_44] Length = 209 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 14/121 (11%) Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQNAE---WIAHNAKFDVGFINAELQRI 113 E +++HGI + L +K F E W+ E + + +AHNAKFD+ + A L Sbjct: 50 ECIEIHGIQPKDVLHEK-----TFDELWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYY 104 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 K P T+ ++R P N LN++ G+ H H AL D+ + V + Sbjct: 105 -KIPWPELDYACTVKLSRAVWPDLVNHKLNTMAAYIGVEFKH---HYALDDAETCAKVVL 160 Query: 173 K 173 + Sbjct: 161 E 161 >gi|260774372|ref|ZP_05883286.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] gi|260610499|gb|EEX35704.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] Length = 215 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 36/178 (20%), Positives = 81/178 (45%), Gaps = 9/178 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 K I D ETT LD + ++ I A +++D T++ F + L +S ++++H Sbjct: 27 KTELISLDCETTSLDPQRAELVSIAATKIIDNRILTSQAFHIRLAAPPSLDS-GSVRIHQ 85 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + L S + F N + ++ ++D ++ ++ PL P+ +I Sbjct: 86 LRHQDLAYGLSEPQALQQLLAFIG--NRPLVGYHIRYDKTILDIACRKQLGFPL-PNPLI 142 Query: 125 DTLSIAR----RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + + ++ P++ DL+ + + + + KH AL D+ + V++++ GG Sbjct: 143 EVSQLYHQQLEKQLPNAYFDLSLAAICHHLDLPMQDKHDALQDAITAALVFVRLSKGG 200 >gi|332142368|ref|YP_004428106.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|327552390|gb|AEA99108.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] Length = 289 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 27/155 (17%) Query: 95 IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154 I N KFD G I AE K PS DT+++A+ P ++DL+SL KR + + Sbjct: 73 IGQNTKFD-GLILAE-----KHNFIPSYYCDTMAMAKGLWPHHKSDLDSLTKR--LFPND 124 Query: 155 RSKHGALLDSHLLSDVYIKMMVGGSQ---INFGFKTNEDRF--FKEEKKTVPN-----IS 204 +SKH Y + G++ I +G + ++ + FK+ ++ P I Sbjct: 125 KSKHKGTELESFKGKTYEDIEADGTEQILIQYGVQDSDITYESFKQMEQWYPKPEMDIID 184 Query: 205 LLKR---------DKPLFTRITKEELDEHDKTIQT 230 + R D L R+ E E + IQT Sbjct: 185 MTVRMFCDPVFVLDTSLMDRVAVEATKEKESVIQT 219 >gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38] gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38] Length = 950 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 32/139 (23%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FD ETTG+D+ N EL+ S + + F P F Sbjct: 378 VCFDTETTGIDALN--------AELVGMSFSFEKGKGFYVP------------------F 411 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +D+ ++ +F FF +N E I N K+D+ ++ N + ++ DT+ Sbjct: 412 PEDQEEAQTLIEKFRPFFENENIEKIGQNMKYDLKILS------NYNMQVKGKLFDTMIA 465 Query: 130 ARRKHPSSRNDLNSLCKRY 148 +P R++++ L + Y Sbjct: 466 HYLINPDMRHNMDVLSETY 484 >gi|306835906|ref|ZP_07468899.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49726] gi|304568180|gb|EFM43752.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC 49726] Length = 233 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 31/162 (19%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL--LDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R + FD+ETT + K+ RI+ V + D K L G + A +HGI Sbjct: 17 RMLAFDLETTSANPKDARIVTSALVRIDGRDVQKVEH-----LADPGIEIPQAATDVHGI 71 Query: 66 T-----------DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--R 112 T +E LKD + +I S + E I +NA FD+ + + Sbjct: 72 TTEKAQAEGRPHEEVLKD--TVDAIKSAW-----EDGLTLIVYNAAFDLTVLRSLTGDFT 124 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154 + DP +ID +S RK + L ++C+ YG+ + + Sbjct: 125 VTGPVFDP-YVIDRVSDKWRK---GKRTLGAVCEHYGVELGN 162 >gi|330970909|gb|EGH70975.1| exonuclease [Pseudomonas syringae pv. aceris str. M302273PT] Length = 237 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +V D+ET+GL+ D+++ IGAV + D + + F+ L K SP L +HG Sbjct: 40 EQRWVVLDLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKISPAVL-IHG 98 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + + +F +F ++ + +A FD ++ L+ Sbjct: 99 LAPSAIAAGSEPVEALLDFMEFVG--DSPILGFHAPFDQHMLSRALK 143 >gi|145294367|ref|YP_001137188.1| DNA polymerase III subunit epsilon [Corynebacterium glutamicum R] gi|140844287|dbj|BAF53286.1| hypothetical protein [Corynebacterium glutamicum R] Length = 360 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 5/107 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + I+++G+ R++ I V L + TF L K P LHG+T+E Sbjct: 28 VSVTIQSSGIHPSTSRMVTIDLVTLSPTLEPVETFHAVL---DSKTDPGPFHLHGVTEEE 84 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 F I + + + HN+ GFI +E +R D Sbjct: 85 FAGAKKFGQILKSLDRLIDGRT--LLIHNSARTWGFIVSEAKRAMND 129 >gi|227487575|ref|ZP_03917891.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51867] gi|227092557|gb|EEI27869.1| DNA polymerase III subunit epsilon [Corynebacterium glucuronolyticum ATCC 51867] Length = 310 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 7/125 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGITD 67 + D ET + + +G K T+ L P+ + +P + +HGIT Sbjct: 5 VSIDFETA--NEQRRSACAVGMARFDAEGKLADTYYTLLHPHPDVDYFNPVNVWVHGITQ 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + D P +S + + F E+ +AHN FD G++ ++L + P +R T+ Sbjct: 63 DDVHDAPQWSDVADDVALFIGERPI--VAHNMAFD-GYVLSDLDSLYGAPPLENRRFCTV 119 Query: 128 SIARR 132 +AR+ Sbjct: 120 RLARK 124 >gi|269926118|ref|YP_003322741.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC BAA-798] gi|269789778|gb|ACZ41919.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC BAA-798] Length = 960 Score = 36.2 bits (82), Expect = 4.7, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 13/163 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+E TG D + D II+IGAV+ R + + P K +L GI Sbjct: 8 VALDLEMTGHDPEQDEIIQIGAVKFTQTRVLGR-WGTLVRPK-VKLPFRIARLTGINPND 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L P F ++ + F + + H+ D+ F+ + ++ +PS +DT + Sbjct: 66 LNKAPVFDAVKDKLRSFVGDHPI--VGHSIGNDLSFLAKQGLALD----NPS--LDTWEL 117 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 A PS + L + G+++ + H AL D+ + V+ Sbjct: 118 AMLLMPSLNAYSLQGVASALGVSVDNH--HDALADAEITRQVF 158 >gi|319942625|ref|ZP_08016933.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis 3_1_45B] gi|319803804|gb|EFW00736.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis 3_1_45B] Length = 502 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 5/92 (5%) Query: 12 FDIETTGLDSKNDRIIEI-GAVELLDYSK-TNRTFQVFLC--PNGRKNSPEALKLHGITD 67 +D ET G+D + DR + G LD+S + T ++F C + +PE+ L GIT Sbjct: 13 YDYETFGVDPRKDRPAQFAGRRTRLDFSPLSGDTGEIFYCRPTEDQLPNPESCLLTGITP 72 Query: 68 EFLKDKPSFSSIFSEF-WDFFNEQNAEWIAHN 98 ++ +K S F++ W+ N I +N Sbjct: 73 QYCAEKGVCESEFADLIWERLNTPGTVSIGYN 104 >gi|297242761|ref|ZP_06926699.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD] gi|296888972|gb|EFH27706.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD] Length = 261 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 11/109 (10%) Query: 12 FDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 FD ETTG + D I+ V EL T+ + P+ N P+A +++G TD Sbjct: 34 FDTETTGANIGKDAIVSATLVLRNPELAHAGDVVSTW--LINPHQPMN-PKASEVNGFTD 90 Query: 68 EFLKDKPSFSSIFSEFW----DFFNEQNAEWIAHNAKFDVGFINAELQR 112 E+L++ EF +N +A+NA FD+ + +L+R Sbjct: 91 EYLQEHGGEPEEELEFLARAVSIAQAKNIPLLAYNAPFDIAMLRHDLKR 139 >gi|251780447|ref|ZP_04823367.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084762|gb|EES50652.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 204 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + FD ETT + K I ++ + + SK T + +P A ++HG + Sbjct: 1 MKLLFFDTETTSI--KPGSICQLSYITVDASSKPQITTGKNFFFTVDEMNPSAQEIHGFS 58 Query: 67 DE---FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 E L D F + EF+ F E + I HN FD+ F+ EL + +D L Sbjct: 59 LEKLYELSDGQYFEDLVPEFFKDFIEADF-LIGHNVNFDIRFLKHELSLLGEDFL 112 >gi|308235255|ref|ZP_07665992.1| exonuclease [Gardnerella vaginalis ATCC 14018] gi|311115068|ref|YP_003986289.1| hypothetical protein HMPREF0421_21184 [Gardnerella vaginalis ATCC 14019] gi|310946562|gb|ADP39266.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019] Length = 256 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 5/106 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTG D I V +KT N +L + +P+A +++G TDEFL Sbjct: 32 FDTETTGAILGEDSICSATLVLRNPQNKTHNDVIATWLINPHKPINPKASQVNGFTDEFL 91 Query: 71 KD---KPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 ++ +P+ + +N +A+NA FDV + +L++ Sbjct: 92 QENGGEPTAEIEALAAAVSLAQSKNIPLLAYNAPFDVEMLRHDLKK 137 >gi|189463384|ref|ZP_03012169.1| hypothetical protein BACCOP_04103 [Bacteroides coprocola DSM 17136] gi|189429813|gb|EDU98797.1| hypothetical protein BACCOP_04103 [Bacteroides coprocola DSM 17136] Length = 164 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 7/117 (5%) Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HG+T + P+F ++ E +AHN+ FD G + A Q N + D Sbjct: 53 QVHGLTFQDTACAPTFPEVWKEIDPII--AGLPLVAHNSPFDEGCLKAAFQAYNMEYPDY 110 Query: 121 SRIIDTLSIARRKHPSS--RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + T +RR S + L ++ + G +SH H AL D+ + + I ++ Sbjct: 111 T-FHCTCRASRRTFGKSLPNHQLQTVALKCGYDLSHH--HHALCDAEACAQIAINIL 164 >gi|323466912|gb|ADX70599.1| DNA polymerase III alpha chain [Lactobacillus helveticus H10] Length = 177 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 7/115 (6%) Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +++H IT + +K+ P+ + ++ + + + AHN +FD + L R N + + Sbjct: 50 IQVHQITADDVKNAPTMAEVWPKIKGLY-QPGMLVAAHNTRFDTNVMRQSLARYNIE--E 106 Query: 120 PSR-IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +IDTL+ ++ P N L+++ + + H H AL DS + + I Sbjct: 107 PHYLVIDTLATSKLFEPELPNHKLDTVSDALDVELWHH--HNALSDSEACAGILI 159 >gi|168180760|ref|ZP_02615424.1| exonuclease family protein [Clostridium botulinum NCTC 2916] gi|182668520|gb|EDT80499.1| exonuclease family protein [Clostridium botulinum NCTC 2916] Length = 253 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 19/242 (7%) Query: 7 MRKIVFDIE-TTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEA 59 M I+FD+E G +++ + II+IGA++L + T TF + P N +P Sbjct: 1 MNYIIFDLEFNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSNLNPFV 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNE-QNAEWIAHNAKFDVGFINAELQRINKDPL 118 L +T + L F ++ +F +F N+ +N I F N ++ + + Sbjct: 61 KNLTNLTMDSLNKANPFREVYKDFLEFLNKNRNIFCIWGMTDMKELFRNIVYYELDTESM 120 Query: 119 DPSRIIDTLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P I+ + + +P S N L++ + + IT + H A D+ ++V+ K+ Sbjct: 121 -PKEYINVQAYTGKYLNYPKSINVGLSNAVELFHIT-KNNDFHNAFNDAFYTAEVFKKIY 178 Query: 176 VGGSQINFGFKTNEDRFF--KEEKKTVPNISLLKRDKPLFTRITKEELDEHD--KTIQTL 231 + TN + K K + +SL K+ + +F TK L E D K T+ Sbjct: 179 SEKIKTKIYKPTNNSTTYRNKNTKTRIDTVSLFKQFEKMFN--TKLTLQEQDMIKLAYTM 236 Query: 232 GK 233 GK Sbjct: 237 GK 238 >gi|330837024|ref|YP_004411665.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374] gi|329748927|gb|AEC02283.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374] Length = 474 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 36/192 (18%) Query: 12 FDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSPEALKLHGIT--- 66 +D+ET GL+ DRI++ V +D + + ++ P P A + GIT Sbjct: 10 YDLETFGLNPYYDRIVQFAGVRTDMDLTPVGQPILLYARPTIDYLPDPLACLVTGITPQE 69 Query: 67 --DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL----- 118 ++ L++ ++I E ++N + N+ +FD FI L R DP Sbjct: 70 AMEKGLRENDFANAILKE----MGQKNTCSVGFNSIRFDDEFIRNLLYRNLIDPYRREWA 125 Query: 119 DPSRIIDTLSIARRKH---------PSSRNDLNSLCKRYGIT----ISHRSKHGALLDSH 165 D + D L + R H P S+++ N + K +T ISH H A Sbjct: 126 DGNSRWDVLDLIRAAHDLRPDSLAWPPSKDNGNPVFKLTELTTANNISHEHAHDA----- 180 Query: 166 LLSDVYIKMMVG 177 LSDVY + + Sbjct: 181 -LSDVYATLAIS 191 >gi|260909505|ref|ZP_05916208.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260636353|gb|EEX54340.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 900 Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 17/136 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL+ D I++I AV++ F VF+ + P L I + Sbjct: 518 VVFDTETTGLNVFEDDIVQIAAVKMRASCVVEGSAFNVFI----KTERPIPAMLGDIPNP 573 Query: 69 FLKDKPSFSSI-----FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR----INKDPLD 119 + + + + +F + + + +AHNA FD + LQR I+ Sbjct: 574 IVAELQRNTCLPAAQALQDFMQYVGD--SVLLAHNADFDYNILRFNLQRYCPSIDLHATH 631 Query: 120 PSRIIDTLSIARRKHP 135 P+ D+L I R P Sbjct: 632 PT-YFDSLKIIRLLQP 646 >gi|51245369|ref|YP_065253.1| hypothetical protein DP1517 [Desulfotalea psychrophila LSv54] gi|50876406|emb|CAG36246.1| unknown protein [Desulfotalea psychrophila LSv54] Length = 188 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP----NGRKNSPE---ALKL 62 ++ DIETT + I+E+G V L S + LC GR P K Sbjct: 6 LIIDIETTNFLKEGGSIVEVGMVALDLESGVTKIIFDSLCREKILTGRHREPPFGWIFKN 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA 108 +T E +++ P F S+ +E N A+N FD F+ + Sbjct: 66 SDLTVEEVREAPDFDSLRAEIQSIINAYPLGATAYNRSFDFDFLES 111 >gi|148379717|ref|YP_001254258.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A str. ATCC 3502] gi|153933415|ref|YP_001384014.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A str. ATCC 19397] gi|153934824|ref|YP_001387556.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A str. Hall] gi|148289201|emb|CAL83296.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502] gi|152929459|gb|ABS34959.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A str. ATCC 19397] gi|152930738|gb|ABS36237.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A str. Hall] gi|322805994|emb|CBZ03561.1| DNA polymerase III epsilon subunit [Clostridium botulinum H04402 065] Length = 195 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 25/134 (18%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ----------VFLCPNGRKNS 56 M+KI D ETTGL E G + L Y + F+ F + + S Sbjct: 1 MKKIFIDTETTGL--------EPGEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEES 52 Query: 57 PEALKLHGITDEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 EA+ HG + E LK F + SE + ++ +IAHN FD F+ AE R+ Sbjct: 53 AEAI--HGFSVEKLKILSKGKKFKDLASEISS--DLKDGIFIAHNVNFDRKFVTAEFNRL 108 Query: 114 NKDPLDPSRIIDTL 127 N P T+ Sbjct: 109 NDMNWIPKEFFCTM 122 >gi|311694144|gb|ADP97017.1| DNA polymerase III, epsilon subunit [marine bacterium HP15] Length = 235 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 8/152 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D+ETTGL+ D +I IGAV + F + L + E + +HGI Sbjct: 40 RLIVLDLETTGLNPSKDEVIAIGAVAIRGGIIHLGDQFDLILR-RPELDIRETVLIHGIG 98 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L ++ N +A+++ FD F+ L + P +D Sbjct: 99 PEALTQGHEIEDALLYLLEWMNGDPI--LAYHSAFDQKFLEKTL-KAQLGYTQPHTWMDV 155 Query: 127 LSIARRKHPSSRN---DLNSLCKRYGITISHR 155 + P+++ L++ +G+ +S R Sbjct: 156 ADLMPAFFPNTKTGGKGLDNWADYFGLEVSER 187 >gi|168180335|ref|ZP_02614999.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum NCTC 2916] gi|226949002|ref|YP_002804093.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum A2 str. Kyoto] gi|182668792|gb|EDT80770.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum NCTC 2916] gi|226843902|gb|ACO86568.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum A2 str. Kyoto] Length = 195 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 25/134 (18%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQ----------VFLCPNGRKNS 56 M+KI D ETTGL E G + L Y + F+ F + + S Sbjct: 1 MKKIFIDTETTGL--------EPGEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEES 52 Query: 57 PEALKLHGITDEFLK---DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI 113 EA+ HG + E LK F + SE + ++ +IAHN FD F+ AE R+ Sbjct: 53 AEAI--HGFSVEKLKILSKGKKFKDLASEISS--DLKDGIFIAHNVNFDRKFVTAEFNRL 108 Query: 114 NKDPLDPSRIIDTL 127 N P T+ Sbjct: 109 NDMNWIPKEFFCTM 122 >gi|312963467|ref|ZP_07777949.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] gi|311282273|gb|EFQ60872.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6] Length = 235 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 4/105 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ET+GL+ D+++ IGAV + D + ++ F+ L K SP L +HG+ Sbjct: 40 RWVVVDLETSGLNLNRDQVLSIGAVVIEDGAVDFSQLFERTLQRTDTKLSPSVL-IHGLG 98 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 + +F +F ++ +A +A FD + L+ Sbjct: 99 PSAIAAGSDPVEALLDFMEFVG--DSPLLAFHAPFDQHMLGRALK 141 >gi|329121817|ref|ZP_08250433.1| exonuclease [Dialister micraerophilus DSM 19965] gi|327468090|gb|EGF13578.1| exonuclease [Dialister micraerophilus DSM 19965] Length = 195 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 14/161 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ D ET N +G V + D SK + + P E ++++GI Sbjct: 1 MKYTAIDFETAFWGKGN--ACSLGIV-ISDGSKLTDEWYDLIRPVHLNFDEECIRVNGIH 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +KDKP F +++ N A AHNA FD G + + R ++ DT Sbjct: 58 PEDVKDKPEFPYYWNKISGLLNGTVA--FAHNAPFDFGVLANTIDRYELPDIN-FYWGDT 114 Query: 127 LSIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + I+R +K P+ + LN++ + +H H AL D+ Sbjct: 115 VEISRILWKKLPNHK--LNTVAEFLNFEFNH---HQALDDA 150 >gi|188026358|ref|ZP_02961799.2| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC 25827] gi|188020096|gb|EDU58136.1| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC 25827] Length = 181 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 22/32 (68%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV 32 M++KN+ I D+E TGLD + DRIIEI + Sbjct: 1 MMQKNENNLIWIDLEMTGLDPERDRIIEIATI 32 >gi|295704398|ref|YP_003597473.1| exonuclease family protein [Bacillus megaterium DSM 319] gi|294802057|gb|ADF39123.1| exonuclease family protein [Bacillus megaterium DSM 319] Length = 197 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 13/103 (12%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-------RTFQVFLCPNGRKNSPEALKLH 63 V D+ETTGL ++ IIE+ A+ ++ Y + ++ F P+ P L Sbjct: 11 VLDVETTGLSAQTCDIIEL-AIAVVSYDSSTGEIIDIVEEYEEFNMPS-TPIFPYITNLT 68 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 GIT+E +K+K ++ + + + IAHNA FD F+ Sbjct: 69 GITNEMVKNK----TLDDKKVESLLTSVSAIIAHNASFDRSFL 107 >gi|71281793|ref|YP_271594.1| exonuclase [Colwellia psychrerythraea 34H] gi|71147533|gb|AAZ28006.1| exonuclase [Colwellia psychrerythraea 34H] Length = 228 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 5/132 (3%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +K+ + D ETTGL++K D+++ +G + L + +T + + + + Sbjct: 38 RIDKVEILAVDFETTGLNAKQDKLLSVGFLTLKKQQMSLKTSYHQIIKTKAQLEESNVII 97 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI-NAELQRINKDPLDPS 121 H ITD + + + + + H A+ + F+ A + P+ P Sbjct: 98 HHITDSQKEQGQALAIVVEALLKAL--AGKVMLVHFARIERQFLAEACYELYGMAPIFP- 154 Query: 122 RIIDTLSIARRK 133 +IDTL++A+R+ Sbjct: 155 -MIDTLALAKRR 165 >gi|255034947|ref|YP_003085568.1| Exonuclease RNase T and DNA polymerase III [Dyadobacter fermentans DSM 18053] gi|254947703|gb|ACT92403.1| Exonuclease RNase T and DNA polymerase III [Dyadobacter fermentans DSM 18053] Length = 195 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGI 65 M +V DIE TG + + II+IGA D ++ T+ + P N S ++ ++HG+ Sbjct: 1 MSFLVLDIEMTGPEPGWNEIIQIGAEFFDDNWRSLGTYLQNVYPENEEAFSVKSEEVHGL 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNA 92 + + L+D P + EF + + NA Sbjct: 61 SLDDLEDAPMIYDVLPEFEKWIKKLNA 87 >gi|317505660|ref|ZP_07963563.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606] gi|315663245|gb|EFV03009.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606] Length = 901 Score = 35.4 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 12/108 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +FD ETTGLD +D I++I AV+L + + ++L K PE L I + Sbjct: 509 IFDTETTGLDVFSDDILQIAAVQLKNGAVVLGSAMSIYL--ESDKEIPEMLG--DIVNPI 564 Query: 70 LKDKP-----SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 ++++ S F D+ Q + HNA FD+ + L R Sbjct: 565 IEERRHHQLISRQDALQRFVDY--AQGTVLLGHNADFDIHILTNNLLR 610 >gi|213965286|ref|ZP_03393483.1| putative DNA polymerase III epsilon subunit [Corynebacterium amycolatum SK46] gi|213952138|gb|EEB63523.1| putative DNA polymerase III epsilon subunit [Corynebacterium amycolatum SK46] Length = 545 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 5/93 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA-LKLHGITDEF 69 FD+ET D+ + II++G + T R + P G + EA + +HGIT Sbjct: 168 AFDVETANEDTGS--IIQLGVAVVRGGKVTERYSWMCRPPKGLEYFDEANVAIHGITAAD 225 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 + +PSF ++F + + +AHNA+FD Sbjct: 226 VAGEPSFPEQLAKF--VDVVGDLDVVAHNARFD 256 >gi|254229568|ref|ZP_04922981.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25] gi|151937941|gb|EDN56786.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25] Length = 226 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 8/105 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D ETTGL + + I+E A+ + + L +A +HGIT+E Sbjct: 30 AIIIDTETTGLGA-DAEIVEFTAI----CANSGEVIVDELVKPTCSIPADATAIHGITNE 84 Query: 69 FLKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 +KD P F +FS F N + I +N+ FD I L + Sbjct: 85 DVKDAPDFHLMFSNRFLPLLNGRPI--IIYNSDFDTRLIIQSLDK 127 >gi|149186517|ref|ZP_01864829.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21] gi|148829744|gb|EDL48183.1| DNA polymerase III subunit epsilon [Erythrobacter sp. SD-21] Length = 297 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 12/103 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVF-----LCPNGRKNSPEALKLHGI 65 + D ETTGL ++ D IIE+ A+ L F L G++ P+ + G+ Sbjct: 51 IVDTETTGLSAETDVIIEL-AIMLCFVGDNGEVIGHFGPVSWLQDPGQELDPKITLVTGL 109 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA-HNAKFDVGFIN 107 + LK++ ++ D A+ IA HNAKFD GFI Sbjct: 110 GAQHLKNQKINDTVARGLLD-----RADLIAAHNAKFDAGFIE 147 >gi|303240250|ref|ZP_07326769.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio cellulolyticus CD2] gi|302592160|gb|EFL61889.1| Exonuclease RNase T and DNA polymerase III [Acetivibrio cellulolyticus CD2] Length = 211 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 12/97 (12%) Query: 7 MRKIVFDIETTGLDSKN---DRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKL 62 M I++D+E K+ + IIEIGA++L K TFQ F+ P+ +K P + Sbjct: 1 MNYIIYDLELNSKPFKSKLPNEIIEIGAIKLDSDLKEIDTFQAFIKPHYFKKLFPVVKRK 60 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 IT E + + SF I S F +WI N+ Sbjct: 61 TKITQEDVNNAESFKEIISSF--------RKWIGDNS 89 >gi|294499074|ref|YP_003562774.1| exonuclease family protein [Bacillus megaterium QM B1551] gi|294349011|gb|ADE69340.1| exonuclease family protein [Bacillus megaterium QM B1551] Length = 197 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 21/107 (19%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTN-------RTFQVFLCPNGRKNSPEALKLH 63 V D+ETTGL ++ IIE+ A+ ++ Y + ++ F P+ P L Sbjct: 11 VLDVETTGLSAQTCDIIEL-AIAVVSYDSSTGEIIDIVEEYEEFNMPS-TPIFPYITNLT 68 Query: 64 GITDEFLKDKP----SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI 106 GIT+E +K+K S+ + + IAHNA FD F+ Sbjct: 69 GITNEMVKNKTLDDKKVESLLTSV--------SAIIAHNASFDRSFL 107 >gi|54303407|ref|YP_133400.1| putative DNA polymerase III [Photobacterium profundum SS9] gi|46916837|emb|CAG23600.1| putative DNA polymerase III [Photobacterium profundum SS9] Length = 236 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 4/124 (3%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL+ + D+I+ IG V L D + + ++++ +G E+ +++ IT + Sbjct: 52 VAIDFETTGLNCQQDKILSIGVVNLTTDMIELASSEEIYI-RHGEFIKAESAQINEITPK 110 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + W Q +AH A + FI + L+ + P IDTL Sbjct: 111 QLHKGVDIDTAID--WLLERIQGKIVLAHCANIEKQFIESYLKDTYQLNTFPCYFIDTLQ 168 Query: 129 IARR 132 + + Sbjct: 169 LEKH 172 >gi|224370128|ref|YP_002604292.1| SbcB [Desulfobacterium autotrophicum HRM2] gi|223692845|gb|ACN16128.1| SbcB [Desulfobacterium autotrophicum HRM2] Length = 471 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 2/110 (1%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + +DIET+GL+ D+I+ A+ L+ + +RT V N SP A H +T E Sbjct: 5 LFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIVISLRNDIVPSPGAFITHRLTPE 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDP 117 LKD + N + I +N+ FD F+ R DP Sbjct: 65 DLKDGLCEYQGVALIHRLLNTPDTISIGYNSLGFDDEFLRFAFYRNLLDP 114 >gi|33240227|ref|NP_875169.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237754|gb|AAP99821.1| DNA polymerase III epsilon subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 236 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTGLD + D+ IE+GA+ ++ FL P N+P A ++ I+ + Sbjct: 15 LIVDTETTGLDPEKDQCIEVGAILFHIEKRSILAQNSFLIPAA--NNP-AEAINKISPDL 71 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFD 102 + + F + + IAHNA+FD Sbjct: 72 TRFAQPWEEGVKYFLALVDIADVL-IAHNAEFD 103 >gi|227503895|ref|ZP_03933944.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC 6940] gi|227199518|gb|EEI79566.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC 6940] Length = 223 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 21/173 (12%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R + FD+ETT ++ K RI+ V + R L G + A K+HG Sbjct: 4 DATRMLSFDLETTSVNPKEARIVTSALVRIDGRDVDKRE---MLADPGVEIPEAAAKIHG 60 Query: 65 ITDEFLK------DKPSFSSIFS--EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 IT E + D+ ++ S + WD I +NA +D+ + A D Sbjct: 61 ITTEKARAEGQPHDEVLAQTVRSIRQAWD----DGLTLIVYNAAYDLSVLRALTGDFTVD 116 Query: 117 -PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITI--SHRSKHGALLDSHL 166 P+ +ID + RK + L + YG+T+ +H + AL + + Sbjct: 117 GPVFDPFVIDRVKDKWRK---GKRTLGDVSAHYGVTLENAHEATSDALAAARI 166 >gi|330804170|ref|XP_003290071.1| hypothetical protein DICPUDRAFT_154549 [Dictyostelium purpureum] gi|325079825|gb|EGC33407.1| hypothetical protein DICPUDRAFT_154549 [Dictyostelium purpureum] Length = 262 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 19/110 (17%) Query: 15 ETTGLDSKNDRIIEIGAVEL---LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 ETTGL S N IE+ L Y K+N T + +PE+ K++ +T L Sbjct: 149 ETTGLTS-NAENIELSCACLNGEAFYRKSNPTISI---------TPESTKINKLTCHDLA 198 Query: 72 DKPSFSSIFSEFWDFFNEQNAE------WIAHNAKFDVGFINAELQRINK 115 + + EF++F +Q+++ IAHN K+D G I L + K Sbjct: 199 GHQYWEKVEEEFFNFIVQQSSDDDAPIYIIAHNEKYDRGRIAFHLTKSTK 248 >gi|293346679|ref|XP_002726376.1| PREDICTED: calcium-dependent secretion activator 1-like isoform 4 [Rattus norvegicus] gi|293358456|ref|XP_002729336.1| PREDICTED: calcium-dependent secretion activator 1-like isoform 3 [Rattus norvegicus] Length = 1300 Score = 35.0 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 30/160 (18%) Query: 20 DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSI 79 D + DRI+ + A+ Y T ++++ +K +P+ LH F KD F Sbjct: 577 DDEQDRILWVQAM----YRATGQSYKPVPAVQSQKLNPKGGTLHADAQLFGKDADRFQKH 632 Query: 80 -FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138 EF A K D F+ LQR D R+ D+ S P Sbjct: 633 GMDEFIS----------ASPCKLDHAFLFRILQRQTLD----HRLNDSYSCLGWFSPGQV 678 Query: 139 NDLNSLCKRYGITISHR-----------SKHGALLDSHLL 167 L+ C RYG+ HR S++GA++D LL Sbjct: 679 FVLDEYCARYGVRGCHRHLCYLTELMEHSENGAVIDPTLL 718 >gi|293346675|ref|XP_002726374.1| PREDICTED: calcium-dependent secretion activator 1-like isoform 2 [Rattus norvegicus] gi|293358451|ref|XP_002729334.1| PREDICTED: calcium-dependent secretion activator 1-like isoform 1 [Rattus norvegicus] Length = 1304 Score = 35.0 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 30/160 (18%) Query: 20 DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSI 79 D + DRI+ + A+ Y T ++++ +K +P+ LH F KD F Sbjct: 577 DDEQDRILWVQAM----YRATGQSYKPVPAVQSQKLNPKGGTLHADAQLFGKDADRFQKH 632 Query: 80 -FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR 138 EF A K D F+ LQR D R+ D+ S P Sbjct: 633 GMDEFIS----------ASPCKLDHAFLFRILQRQTLD----HRLNDSYSCLGWFSPGQV 678 Query: 139 NDLNSLCKRYGITISHR-----------SKHGALLDSHLL 167 L+ C RYG+ HR S++GA++D LL Sbjct: 679 FVLDEYCARYGVRGCHRHLCYLTELMEHSENGAVIDPTLL 718 >gi|313892527|ref|ZP_07826115.1| exonuclease [Dialister microaerophilus UPII 345-E] gi|313119055|gb|EFR42259.1| exonuclease [Dialister microaerophilus UPII 345-E] Length = 195 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 14/161 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ D ET N +G V + D SK + + P E ++++GI Sbjct: 1 MKYTAIDFETAFWGKGN--ACSLGIV-ISDGSKLTDEWYDLIRPVHLNFDEECIRVNGIH 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +KDKP F + + N A AHNA FD G + + R ++ DT Sbjct: 58 PEDVKDKPEFPYYWDKISGLLNGTVA--FAHNAPFDFGVLANTIDRYELPDINFCW-GDT 114 Query: 127 LSIAR---RKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 + I+R +K P+ + LN++ + +H H AL D+ Sbjct: 115 VEISRILWKKLPNHK--LNTVAEFLNFEFNH---HQALDDA 150 >gi|282849129|ref|ZP_06258514.1| DNA polymerase III subunit epsilon domain protein [Veillonella parvula ATCC 17745] gi|282580833|gb|EFB86231.1| DNA polymerase III subunit epsilon domain protein [Veillonella parvula ATCC 17745] Length = 209 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 E +++HGI + + + +F +++ ++ + N +AHNAKFD+ + A L K P Sbjct: 50 ECIEIHGIQPKDVLHEKTFDQLWNAIYENHLKGNI-MVAHNAKFDMNVLRATLDYY-KIP 107 Query: 118 LDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T+ ++R P N LN++ G+ H H AL D+ + V ++ Sbjct: 108 WPELDYACTVKLSRAVWPDLVNHKLNTMAAYIGVEFKH---HYALDDAETCAKVVLE 161 >gi|153940748|ref|YP_001391589.1| exonuclease family protein [Clostridium botulinum F str. Langeland] gi|152936644|gb|ABS42142.1| exonuclease family protein [Clostridium botulinum F str. Langeland] gi|295319617|gb|ADF99994.1| exonuclease family protein [Clostridium botulinum F str. 230613] Length = 253 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 19/242 (7%) Query: 7 MRKIVFDIE-TTGLDSKND-----RIIEIGAVELLDYSKTNRTFQVFLCPNGRKN-SPEA 59 M I+FD+E G +++ + II+IGA++L + T TF + P + +P Sbjct: 1 MNYIIFDLEFNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSDLNPFV 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPL 118 L +T + L SF ++ +F F N ++N I F N +++ + + Sbjct: 61 KNLTNLTMDSLNKAKSFREVYKDFLKFLNKDRNIFCIWGMTDMKELFRNIVYYQLDTESM 120 Query: 119 DPSRIIDTLSIARR--KHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P I+ + + +P S N L++ + + IT + H A D+ ++V+ K+ Sbjct: 121 -PKEYINVQAYTGKYLNYPKSINVGLSNAVQLFHIT-KNNDFHNAFNDAFYTAEVFKKIY 178 Query: 176 VGGSQINFGFKTNEDRFF--KEEKKTVPNISLLKRDKPLFTRITKEELDEHD--KTIQTL 231 + TN + K K + ++L K+ + +F TK L E D K T+ Sbjct: 179 SEKMRTKIYKPTNNSTTYRTKNTKTKIDTVNLFKQFEKMFN--TKLTLQEQDMIKLAYTM 236 Query: 232 GK 233 GK Sbjct: 237 GK 238 >gi|159906145|ref|YP_001549807.1| exonuclease RNase T and DNA polymerase III [Methanococcus maripaludis C6] gi|159887638|gb|ABX02575.1| Exonuclease RNase T and DNA polymerase III [Methanococcus maripaludis C6] Length = 191 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 15/113 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGR----KNSPEALKLHGI 65 + D ETTGL G + L Y T++ ++ N + S A K+HG+ Sbjct: 3 VFLDTETTGLHP--------GQIAQLSYLVTDKNLKLKKVFNQYYSVDRMSRSAAKVHGL 54 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNE--QNAEWIAHNAKFDVGFINAELQRINKD 116 T + L D+ S F + D + +++ I HN FD+ F+ AE +R+ + Sbjct: 55 TMDIL-DELSNGMTFEDTVDEVRDDLEDSVIIGHNISFDIRFLKAEFERLGPE 106 >gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823] gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823] Length = 951 Score = 35.0 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%) Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KDK +I EF FF ++ E IAHN K+D+ L R P + DT+ Sbjct: 415 KDKKEIQAIVDEFKPFFEHKSIEKIAHNMKYDIQV----LHRYGVQFAGP--LFDTMIAH 468 Query: 131 RRKHPSSRNDLNSLCKRY 148 P S+ ++ L + Y Sbjct: 469 YLIQPESKQGMDFLAEYY 486 >gi|298207508|ref|YP_003715687.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus HTCC2559] gi|83850144|gb|EAP88012.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus HTCC2559] Length = 1454 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 17/133 (12%) Query: 10 IVFDIETTGL---------DSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 ++FD ETTGL D+ N R I+I D K + + P+G ++ Sbjct: 3 LIFDTETTGLPKNYNAPITDTDNWPRCIQIAWQLHDDMGKLVSHDDMLIKPDGFNIPYDS 62 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKD 116 ++HGI+ E L DK + S FNE Q + N FD+ + AE R D Sbjct: 63 EQIHGISTE-LADKNGVDLVDS--LHKFNEALKQTKFVVGQNVAFDINIMGAEFYRKGID 119 Query: 117 -PLDPSRIIDTLS 128 PL ++DT + Sbjct: 120 NPLQELPVLDTCT 132 >gi|269797470|ref|YP_003311370.1| exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM 2008] gi|269094099|gb|ACZ24090.1| Exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM 2008] Length = 209 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 E +++HGI + + + +F +++ ++ + N +AHNAKFD+ + A L K P Sbjct: 50 ECIEIHGIQPKDVLHEKTFDQLWNAIYENHLKGNI-MVAHNAKFDMNVLRATLDYY-KIP 107 Query: 118 LDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T+ ++R P N LN++ G+ H H AL D+ + V ++ Sbjct: 108 WPELDYACTVKLSRAVWPDLVNHKLNTMAAYIGVEFKH---HYALDDAETCAKVVLE 161 >gi|262394233|ref|YP_003286087.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25] gi|262337827|gb|ACY51622.1| DNA polymerase III alpha subunit (gram-positive type) [Vibrio sp. Ex25] Length = 205 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+ D ETTGL + + I+E A+ + + L +A +HGIT+E Sbjct: 10 IIIDTETTGLGA-DAEIVEFTAI----CANSGEVIVDELVKPTCSIPADATAIHGITNED 64 Query: 70 LKDKPSFSSIFS-EFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 +KD P F +FS F N + I +N+ FD I L + Sbjct: 65 VKDAPDFHLMFSNRFLPLLNGRPI--IIYNSDFDTRLIIQSLDK 106 >gi|294792957|ref|ZP_06758103.1| exonuclease [Veillonella sp. 6_1_27] gi|294455902|gb|EFG24266.1| exonuclease [Veillonella sp. 6_1_27] Length = 209 Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 E +++HGI + + + +F +++ ++ + N +AHNAKFD+ + A L K P Sbjct: 50 ECIEIHGIQPKDVLHEKTFDQLWNAIYENHLKGNI-MVAHNAKFDMNVLRATLDYY-KIP 107 Query: 118 LDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T+ ++R P N LN++ G+ H H AL D+ + V ++ Sbjct: 108 WPELDYACTVKLSRAVWPDLVNHKLNTMAAYIGVEFKH---HYALDDAETCAKVVLE 161 >gi|221234528|ref|YP_002516964.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus NA1000] gi|220963700|gb|ACL95056.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus NA1000] Length = 209 Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust. Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 7/146 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +M+ I D ET + I + +E + R ++ P G + + + HGI Sbjct: 7 RMKVIAIDFETASEQRASPCSIGLAWIE---DGEVARVEHHYIRPPGNRFAAFNMAFHGI 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 E + D + + + A +AHNA FD+ I + + P + Sbjct: 64 RPEHVADADEWPDVLERIRPEL--EGALVLAHNASFDISVIRRTCEHYDV-PAPGFDYLC 120 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGI 150 T+ +AR P + LN +C G+ Sbjct: 121 TVQVARSVWPELPSHKLNVVCGHLGV 146 Searching..................................................done Results from round 2 >gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] Length = 245 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 245/245 (100%), Positives = 245/245 (100%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL Sbjct: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP Sbjct: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ Sbjct: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY Sbjct: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 Query: 241 ISSNQ 245 ISSNQ Sbjct: 241 ISSNQ 245 >gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 244 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 199/244 (81%), Positives = 222/244 (90%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + KNKMRKI+FDIETTGLD KNDRIIEIGAVELLDYSKT RTFQVFL P+G+K +PEALK Sbjct: 1 MLKNKMRKIIFDIETTGLDKKNDRIIEIGAVELLDYSKTGRTFQVFLSPDGKKVNPEALK 60 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 LHGITDEFL+DKP FS+IF EFWDFFN++NAEWIAHNAKFDVGFINAELQRINKDPLDPS Sbjct: 61 LHGITDEFLRDKPFFSAIFPEFWDFFNDKNAEWIAHNAKFDVGFINAELQRINKDPLDPS 120 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 RI+DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL+DVY++MMVGGSQI Sbjct: 121 RIVDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLADVYVQMMVGGSQI 180 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 +FGFK NED F +++ NIS LKR+KPL RIT+EE+ EH KTIQ +GKN+IW+RY Sbjct: 181 DFGFKANEDFLFGKDENIAQNISFLKREKPLSLRITEEEIAEHTKTIQMIGKNSIWNRYT 240 Query: 242 SSNQ 245 SSNQ Sbjct: 241 SSNQ 244 >gi|237816422|ref|ZP_04595415.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A] gi|237788489|gb|EEP62704.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A] Length = 248 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 109/241 (45%), Positives = 154/241 (63%), Gaps = 4/241 (1%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL + Sbjct: 11 RGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++E L DKP F+ I EF +F + A +AHNA FD+GFINAEL R+++ + Sbjct: 71 HGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEH 128 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+++ GG Q Sbjct: 129 IVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELI-GGKQTA 187 Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 G + + + L R +PL RI+ E H ++ +G A+W +Y+ Sbjct: 188 LGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYL 247 Query: 242 S 242 S Sbjct: 248 S 248 >gi|225626451|ref|ZP_03784490.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo] gi|225618108|gb|EEH15151.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo] Length = 248 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 109/241 (45%), Positives = 154/241 (63%), Gaps = 4/241 (1%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL + Sbjct: 11 RGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++E L DKP F+ I EF +F + A +AHNA FD+GFINAEL R+++ + Sbjct: 71 HGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEH 128 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+++ GG Q Sbjct: 129 IVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELI-GGKQTA 187 Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 G + + + L R +PL RI+ E H ++ +G A+W +Y+ Sbjct: 188 LGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYL 247 Query: 242 S 242 S Sbjct: 248 S 248 >gi|17988339|ref|NP_540973.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. 16M] gi|17984115|gb|AAL53237.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str. 16M] Length = 248 Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats. Identities = 109/241 (45%), Positives = 154/241 (63%), Gaps = 4/241 (1%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL + Sbjct: 11 RGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI++E L DKP F+ I EF +F + A +AHNA FD+GFINAEL R+++ + Sbjct: 71 HGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEH 128 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+++ GG Q Sbjct: 129 IVDTLALARRKHPIGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELI-GGKQTA 187 Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 G + + + L R +PL RI+ E H ++ +G A+W +Y+ Sbjct: 188 LGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYL 247 Query: 242 S 242 S Sbjct: 248 S 248 >gi|153008185|ref|YP_001369400.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC 49188] gi|151560073|gb|ABS13571.1| DNA polymerase III, epsilon subunit [Ochrobactrum anthropi ATCC 49188] Length = 231 Score = 277 bits (709), Expect = 9e-73, Method: Composition-based stats. Identities = 112/234 (47%), Positives = 151/234 (64%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF ++ P GR+ PEAL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHPEALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP+F+ + EF +FF+ A+ +AHNA FD+GFINAEL R+ + + RIIDT Sbjct: 61 NEQLLDKPTFAEVLDEFLEFFD--GAKLVAHNAMFDLGFINAELARLGQAEIQSERIIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI HR+ HGALLDS +L++VYI+++ GG Q G Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENGHRTLHGALLDSEILAEVYIELI-GGKQTALGLS 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++ I L R +PL RI+ E H + LG AIW +Y Sbjct: 178 MGGAVSGNNAGESGAAIVLAARPRPLAPRISDAERAAHAALVDKLGDKAIWKKY 231 >gi|239833112|ref|ZP_04681441.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG 3301] gi|239825379|gb|EEQ96947.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG 3301] Length = 233 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 112/236 (47%), Positives = 152/236 (64%), Gaps = 3/236 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF ++ P GR+ EAL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHAEALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP+F+ I EF +FF+ A+ +AHNA FD+GFINAEL R+ + + R++DT Sbjct: 61 NEQLLDKPTFAEILDEFLEFFD--GAKLVAHNAMFDLGFINAELARLGQAEIQVERVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI HR+ HGALLDS +L++VYI+++ GG Q G Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENGHRTLHGALLDSEILAEVYIELI-GGKQTALGLS 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + I L R +PL RI+ EE H + LG AIW +Y+S Sbjct: 178 IGGTASGSNAGDSGAAIILAARPRPLAPRISDEERAAHAALVAGLGDKAIWKKYLS 233 >gi|23502919|ref|NP_699046.1| DNA polymerase III subunit epsilon [Brucella suis 1330] gi|62290915|ref|YP_222708.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str. 9-941] gi|82700826|ref|YP_415400.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar Abortus 2308] gi|148559666|ref|YP_001259876.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840] gi|161619985|ref|YP_001593872.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365] gi|163844089|ref|YP_001628493.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445] gi|189025128|ref|YP_001935896.1| DNA polymerase III subunit epsilon [Brucella abortus S19] gi|254690204|ref|ZP_05153458.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str. 870] gi|254694694|ref|ZP_05156522.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str. Tulya] gi|254696321|ref|ZP_05158149.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str. 86/8/59] gi|254700703|ref|ZP_05162531.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513] gi|254705074|ref|ZP_05166902.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686] gi|254709049|ref|ZP_05170860.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94] gi|254713525|ref|ZP_05175336.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1] gi|254716120|ref|ZP_05177931.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1] gi|254731237|ref|ZP_05189815.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str. 292] gi|256030574|ref|ZP_05444188.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M292/94/1] gi|256060036|ref|ZP_05450218.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33] gi|256158570|ref|ZP_05456460.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1] gi|256253981|ref|ZP_05459517.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94] gi|256258458|ref|ZP_05463994.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str. C68] gi|260169479|ref|ZP_05756290.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99] gi|260546177|ref|ZP_05821917.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260567458|ref|ZP_05837928.1| DNA polymerase III [Brucella suis bv. 4 str. 40] gi|260755744|ref|ZP_05868092.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str. 870] gi|260758968|ref|ZP_05871316.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str. 292] gi|260760692|ref|ZP_05873035.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str. 86/8/59] gi|260884770|ref|ZP_05896384.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str. C68] gi|261215021|ref|ZP_05929302.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str. Tulya] gi|261217890|ref|ZP_05932171.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1] gi|261221121|ref|ZP_05935402.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94] gi|261316547|ref|ZP_05955744.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94] gi|261321260|ref|ZP_05960457.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1] gi|261324012|ref|ZP_05963209.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33] gi|261751212|ref|ZP_05994921.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513] gi|261755776|ref|ZP_05999485.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686] gi|261759005|ref|ZP_06002714.1| DNA polymerase III [Brucella sp. F5/99] gi|265987621|ref|ZP_06100178.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M292/94/1] gi|265997081|ref|ZP_06109638.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1] gi|294851300|ref|ZP_06791973.1| DNA polymerase III [Brucella sp. NVSL 07-0026] gi|297247299|ref|ZP_06931017.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str. B3196] gi|23348951|gb|AAN30961.1| DNA polymerase III, epsilon subunit [Brucella suis 1330] gi|62197047|gb|AAX75347.1| DnaQ, DNA polymerase III, epsilon subunit [Brucella abortus bv. 1 str. 9-941] gi|82616927|emb|CAJ12028.1| Beta tubulin:DNA polymerase III, epsilon subunit:Exonuclease:DNA polymerase 3, epsilon subunit [Brucella melitensis biovar Abortus 2308] gi|148370923|gb|ABQ60902.1| DNA polymerase III, epsilon subunit [Brucella ovis ATCC 25840] gi|161336796|gb|ABX63101.1| DNA polymerase III, epsilon subunit [Brucella canis ATCC 23365] gi|163674812|gb|ABY38923.1| DNA polymerase III, epsilon subunit [Brucella suis ATCC 23445] gi|189020700|gb|ACD73422.1| DNA polymerase III, epsilon subunit [Brucella abortus S19] gi|260096284|gb|EEW80160.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260156976|gb|EEW92056.1| DNA polymerase III [Brucella suis bv. 4 str. 40] gi|260669286|gb|EEX56226.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str. 292] gi|260671124|gb|EEX57945.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str. 86/8/59] gi|260675852|gb|EEX62673.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str. 870] gi|260874298|gb|EEX81367.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str. C68] gi|260916628|gb|EEX83489.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str. Tulya] gi|260919705|gb|EEX86358.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94] gi|260922979|gb|EEX89547.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1] gi|261293950|gb|EEX97446.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1] gi|261295770|gb|EEX99266.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94] gi|261299992|gb|EEY03489.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33] gi|261738989|gb|EEY26985.1| DNA polymerase III [Brucella sp. F5/99] gi|261740965|gb|EEY28891.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513] gi|261745529|gb|EEY33455.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686] gi|262551549|gb|EEZ07539.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1] gi|264659818|gb|EEZ30079.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M292/94/1] gi|294819889|gb|EFG36888.1| DNA polymerase III [Brucella sp. NVSL 07-0026] gi|297174468|gb|EFH33815.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str. B3196] Length = 234 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 108/237 (45%), Positives = 152/237 (64%), Gaps = 4/237 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP F+ I EF +F + A +AHNA FD+GFINAEL R+++ + I+DT Sbjct: 61 NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+++ GG Q G Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELI-GGKQTALGLT 177 Query: 187 TNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + + L R +PL RI+ E H ++ +G A+W +Y+S Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234 >gi|256370469|ref|YP_003107980.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915] gi|256000632|gb|ACU49031.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915] Length = 234 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 108/237 (45%), Positives = 152/237 (64%), Gaps = 4/237 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP F+ I EF +F + A +AHNA FD+GFINAEL R+++ + I+DT Sbjct: 61 NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+++ GG Q G Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIENSHRTLHGALLDAQILAEVYIELI-GGKQTALGLT 177 Query: 187 TNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + + L R +PL RI+ E H ++ +G A+W +Y+S Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234 >gi|254718114|ref|ZP_05179925.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13] gi|265983066|ref|ZP_06095801.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13] gi|306839740|ref|ZP_07472542.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653] gi|306842813|ref|ZP_07475453.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2] gi|306843489|ref|ZP_07476090.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1] gi|264661658|gb|EEZ31919.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13] gi|306276180|gb|EFM57880.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1] gi|306287007|gb|EFM58518.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2] gi|306405200|gb|EFM61477.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653] Length = 234 Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats. Identities = 108/237 (45%), Positives = 152/237 (64%), Gaps = 4/237 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP F+ I EF +F + A +AHNA FD+GFINAEL R+++ + I+DT Sbjct: 61 NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEIASEHIVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+++ GG Q G Sbjct: 119 LALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELI-GGKQTALGLT 177 Query: 187 TNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + + L R +PL RI+ E H ++ +G A+W +Y+S Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234 >gi|15963758|ref|NP_384111.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021] gi|307302561|ref|ZP_07582318.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C] gi|307316108|ref|ZP_07595552.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83] gi|15072933|emb|CAC41392.1| Probable DNA polymerase III, epsilon chain [Sinorhizobium meliloti 1021] gi|306897948|gb|EFN28690.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83] gi|306903231|gb|EFN33821.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C] Length = 242 Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 161/239 (67%), Gaps = 4/239 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DR+IEIG +EL + T RT +++ P RK PEAL +HGIT Sbjct: 1 MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGERKVHPEALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDKP F+ + E DFF +A W+AHNA FD+GFINAE +R+ P+ R+IDT Sbjct: 61 DEFLKDKPPFADVAQEIVDFFG--DARWVAHNATFDIGFINAEFERLGLPPIGSDRVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYG+ SHR++HGALLDS LL++VYI+M+ GG Q G Sbjct: 119 LALARRKHPMGPNSLDALCRRYGVDNSHRTRHGALLDSELLAEVYIEMI-GGRQAALGLV 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245 E E P + ++ R++PL R+T+ E+ H + +G NAIW +Y ++ Sbjct: 178 VTEAGDRPIEADDGP-VVVVTRERPLRPRLTEAEIAAHAALVAKIGANAIWSKYSEADD 235 >gi|225853502|ref|YP_002733735.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457] gi|256045675|ref|ZP_05448553.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. Rev.1] gi|256263016|ref|ZP_05465548.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|260562976|ref|ZP_05833462.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|265992096|ref|ZP_06104653.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. Rev.1] gi|225641867|gb|ACO01781.1| DNA polymerase III, epsilon subunit [Brucella melitensis ATCC 23457] gi|260152992|gb|EEW88084.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|263003162|gb|EEZ15455.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str. Rev.1] gi|263092889|gb|EEZ17064.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|326410068|gb|ADZ67133.1| DNA polymerase III subunit epsilon [Brucella melitensis M28] gi|326539784|gb|ADZ87999.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90] Length = 234 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 108/237 (45%), Positives = 152/237 (64%), Gaps = 4/237 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+ DR+IEIG VEL++ T RTF F+ P GR+ P+AL +HGI+ Sbjct: 1 MREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E L DKP F+ I EF +F + A +AHNA FD+GFINAEL R+++ + I+DT Sbjct: 61 NEQLLDKPVFAEILDEFLEFID--GARLVAHNAMFDLGFINAELARLDQAEITSEHIVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LCKRYGI SHR+ HGALLD+ +L++VYI+++ GG Q G Sbjct: 119 LALARRKHPIGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELI-GGKQTALGLT 177 Query: 187 TNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + + L R +PL RI+ E H ++ +G A+W +Y+S Sbjct: 178 MESGSAGGDSRGNGSAPVVLAARPRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 234 >gi|150398405|ref|YP_001328872.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419] gi|150029920|gb|ABR62037.1| DNA polymerase III, epsilon subunit [Sinorhizobium medicae WSM419] Length = 242 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 161/239 (67%), Gaps = 4/239 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DR+IEIG +EL + T RT +++ P RK PEAL +HGIT Sbjct: 1 MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGDRKVHPEALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FLKDKPSF+ I E DFF +A W+AHNA FD+GFINAE +R+ P+ R+IDT Sbjct: 61 DDFLKDKPSFAEIAQEIVDFFG--DARWVAHNATFDMGFINAEFERLGLPPVGSDRVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR++HGALLDS LL++VYI+M+ GG Q G Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTRHGALLDSELLAEVYIEMI-GGRQAALGLV 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245 E E P I ++ R++PL R+T+ E+ H + +G NAIW ++ + Sbjct: 178 MTETGGRSLEADDGPVI-IVGRERPLRPRLTEAEIAAHAALVSKIGANAIWAKFSEAED 235 >gi|209551510|ref|YP_002283427.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537266|gb|ACI57201.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 245 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 120/244 (49%), Positives = 162/244 (66%), Gaps = 8/244 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNVIHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK F+ + E FF +A+WIAHNA FD+GFINAEL RI P+ P R++DT Sbjct: 61 DEFLKDKKPFAEVAEEILTFFG--DAKWIAHNATFDMGFINAELARIGLPPILPERVLDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ GG Q FG Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMI-GGRQAAFGLS 177 Query: 187 T-----NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 R E+ V S+L+R +PL R+++ E H+ + LG+ IW +Y Sbjct: 178 MTATSGQNGRGDATEEDDVVIASVLERPRPLAPRLSQSEAQAHEALVAKLGEKGIWAKYA 237 Query: 242 SSNQ 245 S +Q Sbjct: 238 SLDQ 241 >gi|222084205|ref|YP_002542731.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84] gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84] Length = 236 Score = 271 bits (694), Expect = 6e-71, Method: Composition-based stats. Identities = 112/237 (47%), Positives = 157/237 (66%), Gaps = 6/237 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD+K DRIIEIG +EL ++ T +T +++ P RK P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNKADRIIEIGGIELFNHFPTGKTLHLYINPGDRKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE LKDKP F+ + E FF + A+WIAHNA FD+GF+NAE R+ + P+ P +IDT Sbjct: 61 DESLKDKPPFADVADEILAFF--EGAKWIAHNATFDMGFVNAEFNRLGRPPILPDMVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYGI SHR++HGALLDS LL++VYI+M+ GG Q G Sbjct: 119 LAMARRKHPMGPNSLDALCRRYGIDNSHRTRHGALLDSELLAEVYIEMI-GGRQTALGLG 177 Query: 187 T---NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + + R + + +L R +PL R+++ E H + LG+ IW +Y Sbjct: 178 SSNGSSARSRQNNDVEEVVVEILARPQPLPGRVSETEEAAHAALVAKLGEKGIWSKY 234 >gi|227823864|ref|YP_002827837.1| DNA polymerase III subunit epsilon [Sinorhizobium fredii NGR234] gi|227342866|gb|ACP27084.1| DNA polymerase III, epsilon subunit [Sinorhizobium fredii NGR234] Length = 232 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 117/234 (50%), Positives = 159/234 (67%), Gaps = 4/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLDS+ DR+IEIG VEL + T RT +++ P RK P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDSREDRVIEIGGVELENQFPTGRTIHIYINPGDRKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FLKDKPSF+ + E DFF +A W+AHNA FD+GFINAE R+ P+ R+ DT Sbjct: 61 DDFLKDKPSFADVVEEIVDFFG--DARWVAHNATFDIGFINAEFDRLGLPPVVIDRVTDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ GG Q G Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNSHRAKHGALLDSELLAEVYIEMI-GGRQAALGLV 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 T+E + P I +++R++ L R+T+ E+ H + +G AIW +Y Sbjct: 178 TSEIGGLAVQADDGPII-VMQRERLLAPRLTEAEIAAHAALVSKIGAKAIWMKY 230 >gi|86355674|ref|YP_467566.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42] gi|86279776|gb|ABC88839.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CFN 42] Length = 240 Score = 267 bits (684), Expect = 7e-70, Method: Composition-based stats. Identities = 116/243 (47%), Positives = 160/243 (65%), Gaps = 8/243 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK F+++ E FF + +WIAHNA FD+GFINAE RI P+ P ++IDT Sbjct: 61 DEFLKDKKPFAAVADEILAFFG--DGKWIAHNATFDMGFINAEFARIGLPPILPDKVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ GG Q FG Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMI-GGRQAAFGLS 177 Query: 187 TNEDRFFKEEKKTV-----PNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 + + + L+R +PL +R+++ E H+ + LG+ IW +Y Sbjct: 178 ISGQPGQAARGEMAMEDDMAFAAALERPRPLGSRLSRSEAQAHEALVAKLGEKGIWAKYA 237 Query: 242 SSN 244 SSN Sbjct: 238 SSN 240 >gi|218660611|ref|ZP_03516541.1| DNA polymerase III subunit epsilon [Rhizobium etli IE4771] Length = 238 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 160/239 (66%), Gaps = 5/239 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK +F+ + E FF +A+WIAHNA FD+GFINAE RI P+ P R++DT Sbjct: 61 DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRK+P N L++LC+RYG+ SHR+KHGALLDS LL++VYI+M+ GG Q G Sbjct: 119 LSMARRKNPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMI-GGRQAALGLG 177 Query: 187 TNEDRFFKE--EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 + E + + +L+R +PL R+++ E H+ + LG+ IW ++ SS Sbjct: 178 QSGQAAGGEMAMEDDGAILEVLERPRPLAPRLSQAEAQAHEALVAKLGEKGIWSKFASS 236 >gi|190889645|ref|YP_001976187.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652] gi|190694924|gb|ACE89009.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652] Length = 241 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 111/240 (46%), Positives = 158/240 (65%), Gaps = 6/240 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK +F+ + E FF +A+WIAHNA FD+GFINAE RI P+ P R++DT Sbjct: 61 DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGF 185 LS+ARRKHP N L++LC+RYG+ SHR+KHGALLDS LL++VYI+M+ G + + G Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQAALGLGL 178 Query: 186 KTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + E + ++L+R +PL R+++ E H + LG IW ++ S Sbjct: 179 SGQSGQTARGEMAMEDDGVISAVLERPRPLAPRLSQAEAQAHAALVSKLGDKGIWSKFAS 238 >gi|110635810|ref|YP_676018.1| DNA polymerase III subunit epsilon [Mesorhizobium sp. BNC1] gi|110286794|gb|ABG64853.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1] Length = 242 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 112/238 (47%), Positives = 160/238 (67%), Gaps = 4/238 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD + DR+IE+G VEL + T RT F+ P GR P+A +HGI+ Sbjct: 1 MREIIFDTETTGLDPREDRVIELGCVELANRFPTGRTLHYFINPQGRSVHPDAQAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D L KP F+ I EF +F + A+ +AHNA FD+GFINAE QR+ + +DP+R+IDT Sbjct: 61 DADLAGKPVFAEILDEFLEFID--GAKLVAHNANFDIGFINAEFQRVGQPYIDPARVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+IARRKHP N L++LC+RYGI SHR+KHGALLD+ LL++VYI++ GG Q +FG + Sbjct: 119 LAIARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDAELLAEVYIEL-AGGKQASFGLE 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 +E +V ++L R +PL +R+T EE H+ + +G+NA+W + + + Sbjct: 178 IATQGVAEETSSSV-IVALPPRPRPLRSRLTPEEQQAHEALVAGIGENALWRKLMPAE 234 >gi|327191192|gb|EGE58235.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CNPAF512] Length = 241 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 110/240 (45%), Positives = 159/240 (66%), Gaps = 6/240 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK +F+ + E FF +A+WIAHNA FD+GFINAE RI P+ P R++DT Sbjct: 61 DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGF 185 LS+ARRKHP N L++LC+RYG+ SHR+KHGALLDS LL++VYI+M+ G + + G Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQAALGLGL 178 Query: 186 KTNEDRFFKEE---KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 + + + + ++L+R +PL R+++ E H + LG+ IW ++ S Sbjct: 179 SGQSGQTARGDMAMEDDGVISAVLERPRPLAPRLSQAEAQAHAALVSKLGEKGIWSKFAS 238 >gi|325291458|ref|YP_004277322.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3] gi|325059311|gb|ADY63002.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3] Length = 233 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 114/234 (48%), Positives = 155/234 (66%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+SK DR+IEIG +EL ++ T RT +++ P RK P+AL +HGIT Sbjct: 1 MREIIFDTETTGLESKLDRVIEIGGIELNNHFPTGRTLHIYINPEDRKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FLKDKP F+ + E +FF + A W+AHNA FD+GFINAE R+ P+ + DT Sbjct: 61 DDFLKDKPKFAEVVDEIREFF--EGARWVAHNATFDMGFINAEFARLGIAPVSSELVTDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ GG Q GF Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMI-GGRQTALGFG 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + + + L+R PL +R+ E + H K + +G AIW+RY Sbjct: 178 SGSKQQAVTIEDDDVPHEPLQRPHPLPSRLDAETIAAHGKLVLGMGDKAIWNRY 231 >gi|83953070|ref|ZP_00961792.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1] gi|83842038|gb|EAP81206.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1] Length = 228 Score = 264 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 98/233 (42%), Positives = 149/233 (63%), Gaps = 8/233 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL+ + T T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPE-RSMPAEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP F+ I +F DF +++ + HNA FD+ F+NAEL+ + + + +D Sbjct: 60 GDEFLRDKPKFAQIGQDFLDFIG--DSKLVIHNAAFDIKFLNAELKWMGLPQIPWEQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++ P S L++LC+R+GI + R+ HGALLDS +L+DVY++++ GG Q +FG Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILADVYLELI-GGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 T + K+E T P+ + R PL +RIT +E H + + LG +A+W Sbjct: 177 ST---KPEKKEGDTTPDWTPKPRPTPLPSRITPQEAAAHTEFVDKLGDSAVWK 226 >gi|49473693|ref|YP_031735.1| DNA polymerase III epsilon chain [Bartonella quintana str. Toulouse] gi|49239196|emb|CAF25512.1| DNA polymerase III epsilon chain [Bartonella quintana str. Toulouse] Length = 235 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 104/232 (44%), Positives = 151/232 (65%), Gaps = 3/232 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD + DRIIEIG VE++D T + F V+L P G S EA+ +HG+T Sbjct: 1 MREIIFDTETTGLDKEKDRIIEIGCVEMIDRYLTGKRFHVYLNPQGVVISDEAVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK++ SFS I E +F + A +AHNA FD+GF+NAEL R+NK + I+DT Sbjct: 61 NERLKNEKSFSDIADELLEFIS--GATMVAHNASFDIGFLNAELGRVNKPLISVDNILDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRK P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ GG Q GF+ Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGIDNSHRVFHGALLDAEILADVYIELI-GGKQGVLGFE 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 ++ + +++ R +PL R++ +E H I+ +G+ A+W+ Sbjct: 178 NSKSVEQDSQNDKNALLAVKVRPQPLSPRLSAQEKIMHADFIKKIGEKALWN 229 >gi|116249771|ref|YP_765609.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. viciae 3841] gi|115254419|emb|CAK05493.1| putative DNA polymerase subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 240 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 112/242 (46%), Positives = 163/242 (67%), Gaps = 6/242 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +F+ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK F+ + + FF +A+WIAHNA FD+GFINAE RI P+ P R++DT Sbjct: 61 DEFLKDKQPFAEVAEQILTFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVLDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGF 185 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ G + + G Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGGRQAALGLGM 178 Query: 186 KTNEDRFFKEEKKTVPNI---SLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 ++ + E ++ +LL+R +PL R+++ E H+ + LG+ ++W +Y + Sbjct: 179 VGKSNQAARGEMGMEDDVVIAALLERPRPLAPRLSQTEEQAHEALVAKLGEKSVWAKYAN 238 Query: 243 SN 244 + Sbjct: 239 LD 240 >gi|83942021|ref|ZP_00954483.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36] gi|83847841|gb|EAP85716.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36] Length = 228 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 97/233 (41%), Positives = 149/233 (63%), Gaps = 8/233 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL+ + T T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPE-RSMPAEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I +F DF +++ + HNA FD+ F+NAEL+ + + + +D Sbjct: 60 GDDFLRDKPKFAQIGQDFLDFIG--DSKLVIHNAAFDIKFLNAELKWMGLPQIPWEQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++ P S L++LC+R+GI + R+ HGALLDS +L+DVY++++ GG Q +FG Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILADVYLELI-GGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 T + K+E T P+ + R PL +RIT +E H + + LG +A+W Sbjct: 177 ST---KPEKKEGDTTPDWTPKPRPTPLPSRITPQEAAAHTEFVDKLGDSAVWK 226 >gi|163757474|ref|ZP_02164563.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43] gi|162284976|gb|EDQ35258.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43] Length = 233 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 115/233 (49%), Positives = 157/233 (67%), Gaps = 4/233 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGLD+K DRIIEIG VEL + T R+ +F+ P+GR P+AL +HGIT Sbjct: 1 MREIVFDTETTGLDNKVDRIIEIGCVELENQFPTGRSLHLFINPDGRAVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FL DKP F+ + E FF+ A ++AHNA FD+GF+NAE RI P+DP +IDT Sbjct: 61 DQFLADKPVFADLADEIAAFFD--GAHYVAHNANFDMGFLNAEFDRIGLPPVDPGLVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARR+HP N L++LC+RYGI +HR+KHGALLD+ LL+DVYI+M GG Q G Sbjct: 119 LALARRRHPMGPNSLDALCRRYGIDNAHRTKHGALLDAELLTDVYIEM-RGGRQAALGLS 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + E EE ++V I + +R L R+T EL+ H + +G +A+W + Sbjct: 178 SAEAGNKTEESESV-VIEIGERPGKLPERLTAGELEAHSTLVNRIGADALWLK 229 >gi|241206948|ref|YP_002978044.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860838|gb|ACS58505.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 240 Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 111/242 (45%), Positives = 162/242 (66%), Gaps = 6/242 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +F+ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK F + + FF +A+WIAHNA FD+GFINAEL RI P+ P R++DT Sbjct: 61 DEFLKDKQPFGEVAEQILTFFG--DAKWIAHNATFDMGFINAELARIGLPPILPERVLDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGF 185 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ G + + G Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGGRQAALGLGM 178 Query: 186 KTNEDRFFKEEKKTVPNI---SLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 ++ + + ++ ++L+R +PL R++ E H+ + LG+ ++W +Y + Sbjct: 179 VGRSNQAARGDMGMEDDVVIAAVLERPRPLAPRVSDIEEQAHEALVAKLGEKSVWAKYAN 238 Query: 243 SN 244 + Sbjct: 239 LD 240 >gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4] gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4] Length = 236 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 115/235 (48%), Positives = 159/235 (67%), Gaps = 4/235 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGL+SK DR+IEIG +EL ++ T R+F V++ P R P+AL +HGIT Sbjct: 1 MREIVFDTETTGLESKLDRVIEIGGIELFNHFPTGRSFHVYINPADRAIHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 EFLKDKP F+ I + FF+ A+W+AHNA FD+GFINAE +R+ + + P +IDT Sbjct: 61 PEFLKDKPVFADIVEDLVAFFD--GAKWVAHNATFDMGFINAEFERLGRPLVGPEHVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ GG Q FG + Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEML-GGRQATFGLE 177 Query: 187 -TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + + + + + R K L +R+T+ E + H ++ LG+ AIW Y Sbjct: 178 QSGNSDKRSRTQDSNVTVEIAARPKTLASRLTEAEQERHAALVKRLGQKAIWAHY 232 >gi|121602632|ref|YP_988343.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis KC583] gi|120614809|gb|ABM45410.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis KC583] Length = 234 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 103/234 (44%), Positives = 145/234 (61%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD NDRIIEIG VE++D T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLDKDNDRIIEIGCVEMVDRYLTGRQFHVYLNPQGVIIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK + F I E +F + A IAHNA FD+ F+NAEL+R+NK + +IDT Sbjct: 61 NERLKGEKKFDDIADELLEFID--GAMMIAHNANFDISFLNAELKRVNKPLISIDNVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRK P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ GG Q GF Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGIDNSHRILHGALLDAEILADVYIELI-GGKQGTLGFY 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + R E + + R + L R++++E H + +GK A+W+++ Sbjct: 178 NSNGRHLNTENGSNISYVFKIRPQALPPRLSEQEKSMHADLVNQIGKKALWNQF 231 >gi|328541691|ref|YP_004301800.1| DNA polymerase III, epsilon subunit [polymorphum gilvum SL003B-26A1] gi|326411443|gb|ADZ68506.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum SL003B-26A1] Length = 240 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 102/241 (42%), Positives = 144/241 (59%), Gaps = 11/241 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I FD ETTGLD +N DR++EIG VEL ++ T T+ V++ P R A +HG+ Sbjct: 1 MREIAFDTETTGLDPRNGDRLVEIGGVELFNHVPTGNTYHVYINPE-RDMPEAAFNVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ I EF F +A + HNA FD+GFIN EL R + P+ ++++D Sbjct: 60 SAEFLADKPVFAEIVDEFLAFVG--DARLVIHNAAFDMGFINMELSRAGRLPIPRTQVLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L++LC RYGI S R++HGALLDS LL++VY++++ GG Q G Sbjct: 118 TLELARRKHPMGPNSLDALCGRYGIDNSRRTRHGALLDSELLAEVYLELI-GGRQTALGL 176 Query: 186 KTNEDRFFK------EEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 E+ + E S R PL + +T+EE H + +G+ AIW + Sbjct: 177 VLQEEVSGRSYGGQSEGSGPAQVRSAPPRPVPLASWLTEEEKAAHATFVAGMGETAIWSK 236 Query: 240 Y 240 Y Sbjct: 237 Y 237 >gi|307943432|ref|ZP_07658776.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4] gi|307773062|gb|EFO32279.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4] Length = 239 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 100/243 (41%), Positives = 150/243 (61%), Gaps = 11/243 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I FD ETTGL+ + DR++EIG VEL ++ T +++ V++ P R EA ++HG+ Sbjct: 1 MREISFDTETTGLNPRGGDRLVEIGGVELWNHIPTGKSYHVYINPQ-RDMPEEAFRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL DK F + EF DF +A + HNA FD+GFIN EL+R + + +++D Sbjct: 60 SEEFLSDKQLFDQVADEFLDFVG--DATLVIHNAAFDMGFINMELERSGRRIISNDQVLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP+ N L++LC RYGI S R KHGALLD+ +L++VY++++ GG Q G Sbjct: 118 TLDLARRKHPTGPNSLDALCSRYGIDNSKRVKHGALLDAEILAEVYLELI-GGRQTALGL 176 Query: 186 KTNEDR------FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 +ED E + N + +R PL I++ E H I+ +G+NAIW++ Sbjct: 177 TADEDAQTASSGGSAAEPGELGNFNAKQRPSPLTRPISEAEFAAHKAFIEGMGENAIWNK 236 Query: 240 YIS 242 Y S Sbjct: 237 YGS 239 >gi|15887364|ref|NP_353045.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str. C58] gi|15154863|gb|AAK85830.1| DNA polymerase III, epsilon chain [Agrobacterium tumefaciens str. C58] Length = 232 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 113/234 (48%), Positives = 161/234 (68%), Gaps = 4/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+SK DR+IEIG +EL+++ T RT +++ P RK P+AL +HGIT Sbjct: 1 MREIIFDTETTGLESKLDRVIEIGGIELINHFPTGRTLHLYISPEDRKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDKP F+ + + +FF+ A W+AHNA FD+GFINAE R+ +P+ + DT Sbjct: 61 DEFLKDKPKFAEVIDQIREFFD--GARWVAHNATFDMGFINAEFARLGIEPVSAELVTDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LS+ARRK+P N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ GG Q GF Sbjct: 119 LSLARRKNPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMI-GGRQTALGFG 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + + ++ VP ++ L+R L +R+ + + H K + +G AIW+RY Sbjct: 178 SAARQETIIIEEDVP-LAPLQRPSALPSRLDADTIAAHGKLVLGMGDKAIWNRY 230 >gi|13473785|ref|NP_105353.1| DNA polymerase III subunit epsilon [Mesorhizobium loti MAFF303099] gi|14024536|dbj|BAB51139.1| DNA polymerase III epsilon chain [Mesorhizobium loti MAFF303099] Length = 240 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 104/239 (43%), Positives = 152/239 (63%), Gaps = 4/239 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLDS++DR+IE+G VEL++ T RTF ++ P GR EA +HGI+ Sbjct: 1 MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHEEAQAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L KP+F+ I E+ F A+ +AHNA FD+GF+N E R+ +DP R++DT Sbjct: 61 AADLAGKPTFAEIAEEWLTF--TDGAKLVAHNATFDIGFLNVEFGRLGHPVVDPGRVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYGI + R+KHGALLDS LL++VYI+++ GG Q Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNTKRTKHGALLDSELLAEVYIELI-GGKQAALILD 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245 + E + + I + +R +PL R+T+ E H + TLG+ A+W + SS + Sbjct: 178 SATAPAQGENVRHI-EIIVAERPRPLLPRLTEAERAAHAAMVATLGEKALWLKANSSEK 235 >gi|126730109|ref|ZP_01745921.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37] gi|126709489|gb|EBA08543.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37] Length = 229 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 102/234 (43%), Positives = 145/234 (61%), Gaps = 7/234 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL ++ T T+ ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGFEPEQGDRIVEIGAVELFNHVPTGETYHQYINPE-RSMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I EF F +++ + HNA FDV F+NAEL+ N+ L ID Sbjct: 60 GDDFLRDKPVFAKIVDEFRTFIG--DSKLVIHNAAFDVKFLNAELRWANRPTLAKDCAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARRK P S L++LC+R+GI S R+ HGALLDS +L++VY++++ GG Q +FG Sbjct: 118 TLDIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLELI-GGKQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + +TV N R PL +R+T E H ++ LG+NAIW+R Sbjct: 177 TSASNTP--SVGETVTNWRPKPRSTPLPSRLTDTEKAAHAAFVEKLGENAIWNR 228 >gi|114706065|ref|ZP_01438968.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506] gi|114538911|gb|EAU42032.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506] Length = 242 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 111/236 (47%), Positives = 158/236 (66%), Gaps = 4/236 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGLD+ DR+IEIG VEL ++ T +T+ ++ P GRK P A +HGI+ Sbjct: 1 MREIVFDTETTGLDNTIDRVIEIGGVELWNHIPTGKTYHQYIRPAGRKVDPAAFDVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFL DKP F I EF FF+ +A+ IAHNA FD+GF+NAELQR+ P++PS +IDT Sbjct: 61 DEFLLDKPLFEEIADEFVAFFS--DAKLIAHNANFDIGFLNAELQRLRHPPIEPSLVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRK P + L++LC R+ + S R KHGALLDS LL+DVYI+++ GG Q + G Sbjct: 119 LAMARRKFPMAPASLDALCSRFAVDTSKREKHGALLDSELLADVYIELI-GGRQSSLGLI 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 D + + P +++ R+ PL R++++E H +++LG A+W RY+ Sbjct: 178 VEADETYASGEAGGP-VAVSAREAPLAPRLSEDEASRHLAFVESLGDEALWWRYLP 232 >gi|254502882|ref|ZP_05115033.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11] gi|222438953|gb|EEE45632.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11] Length = 239 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 96/243 (39%), Positives = 142/243 (58%), Gaps = 11/243 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I FD ETTGL+ + DR++EIG VEL+++ T + V++ P R A K+HG+ Sbjct: 1 MREISFDTETTGLNPRGGDRLVEIGGVELINHVPTGNAYHVYINPQ-RDMPEGAFKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL DKP F + EF +F + + HNA FD+GFIN EL+R + + +++ID Sbjct: 60 SEEFLSDKPLFEQVADEFLEFVG--DGTLVIHNAAFDMGFINMELERCGRRTISNTQVID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARRKHPS N L++LC RYGI S R KHGALLD+ +L++VY++M+ GG Q Sbjct: 118 TLEIARRKHPSGPNSLDALCSRYGIDNSKRVKHGALLDAEILAEVYLEMI-GGKQRALIL 176 Query: 186 KTNEDRFF------KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 +E+ E + + R PL + EE H + +G +A+W + Sbjct: 177 DPDEEDGLIGSGDAGSEPGELGSFKARPRPTPLSALLRGEEFAAHKAFVAGMGDSALWKK 236 Query: 240 YIS 242 Y+ Sbjct: 237 YVG 239 >gi|21328725|gb|AAM48731.1| DNA polymerase III, epsilon subunit [uncultured marine proteobacterium] Length = 231 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 97/234 (41%), Positives = 147/234 (62%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL ++ T RT+ ++ P R A +HG+ Sbjct: 1 MREIVLDTETTGFEPSEGDRIVEIGAVELFNHLPTGRTYHQYINPE-RNMPEAAFNVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL DKP F +I EF DF +++ + HNA FD+ F+NAEL +N+ L + ID Sbjct: 60 SEEFLSDKPIFKNIAQEFIDFIA--DSKLVIHNASFDMKFLNAELGWVNRPALPNDQTID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARRK P S L++LC+R+GI S R+ HGALLDS +L++VY++++ GG Q + Sbjct: 118 TLAIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLELV-GGRQPDLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 E + + ++ P+ R KPL +R++ +E H+ I LG +A+W + Sbjct: 177 SGPEVKTSTDGSQS-PDWRPAPRPKPLASRLSDKEKAAHETFIAALGSDALWTK 229 >gi|319407879|emb|CBI81531.1| DNA polymerase III epsilon chain [Bartonella schoenbuchensis R1] Length = 235 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 101/234 (43%), Positives = 145/234 (61%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD +DRIIEIG VE++D T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLDKDSDRIIEIGCVEMVDRYLTKRQFHVYLNPQGVIIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK++ F I EF +F + A +AHNA FD+ F+NAEL RINK + +IDT Sbjct: 61 NERLKNEKKFEDIADEFLEFID--GATMVAHNASFDISFLNAELGRINKPLISVDNVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+IAR+K P N L+ LCKR+GI S+R HGALLD+ +L+DVYI+++ GG Q F Sbjct: 119 LAIARQKFPMGPNSLDVLCKRFGIDNSNRVLHGALLDAEILADVYIELI-GGKQGVLSFD 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 N D + + ++ R L +R++ +E D H ++ +G A+W+ + Sbjct: 178 NNSDLDENIQNGKNVSHTVKTRPHALPSRLSTQEKDMHADLVKKIGDKALWNNF 231 >gi|84684641|ref|ZP_01012542.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Maritimibacter alkaliphilus HTCC2654] gi|84667620|gb|EAQ14089.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Rhodobacterales bacterium HTCC2654] Length = 230 Score = 254 bits (650), Expect = 7e-66, Method: Composition-based stats. Identities = 94/234 (40%), Positives = 141/234 (60%), Gaps = 7/234 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D K DR++EIGAVEL ++ T RT+ ++ P R A +HG+ Sbjct: 1 MREIVLDTETTGFDPKTGDRMVEIGAVELFNHMPTGRTYHQYINPQ-RDMPEGAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFLKD P F+ I F +F +A+ + HNA FDV F+NAEL + + + ID Sbjct: 60 SEEFLKDYPVFADIADAFLEFIG--DAKLVIHNASFDVPFLNAELGWCKRRQIPMDQSID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR+K P + N L++LC+R+GI SHR+ HGALLDS +L++VY++++ GG Q + Sbjct: 118 TLLIARKKFPGAGNSLDALCRRFGIDNSHRTLHGALLDSEILAEVYLELI-GGRQPDLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + R + L +RIT+EE H ++ LG +A+W + Sbjct: 177 GGGGSQTSDTTQNE--DWRPRPRPEALPSRITEEERAAHQAFVEKLGASALWSK 228 >gi|260467189|ref|ZP_05813366.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum WSM2075] gi|259029042|gb|EEW30341.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum WSM2075] Length = 241 Score = 254 bits (649), Expect = 9e-66, Method: Composition-based stats. Identities = 103/238 (43%), Positives = 146/238 (61%), Gaps = 3/238 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLDS++DR+IE+G VEL++ T RTF ++ P GR EA +HGI+ Sbjct: 1 MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHAEAQAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L KP+F+ I E+ F A+ +AHNA FD+GF+N E R+ +DP ++DT Sbjct: 61 AADLAGKPTFAEIVEEWLAF--TDGAKLVAHNATFDIGFLNVEFGRLGHPVIDPGLVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYGI + R+KHGALLDS LL++VYI+++ GG Q Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNAKRTKHGALLDSELLAEVYIELI-GGKQAALILD 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 + + E I R PL R+T+ E H + TLG+ A+W + SS Sbjct: 178 SATAPAQRGENVRHIEIIAAVRPGPLLPRLTEAERAAHAAMVATLGEKALWLKATSSE 235 >gi|83645320|ref|YP_433755.1| DNA polymerase III subunit epsilon [Hahella chejuensis KCTC 2396] gi|83633363|gb|ABC29330.1| DNA polymerase III, epsilon subunit [Hahella chejuensis KCTC 2396] Length = 240 Score = 254 bits (649), Expect = 9e-66, Method: Composition-based stats. Identities = 100/240 (41%), Positives = 144/240 (60%), Gaps = 14/240 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ RIIEIG VE++D S T + V++ P R+ A ++HGI Sbjct: 1 MRQIVLDTETTGLETSQGHRIIEIGCVEVIDRSLTGNHYHVYINPE-REVDAGAFEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 ++EFL DKP F + +F DF + AE + HNA FDVGFI+ E + D Sbjct: 60 SNEFLADKPKFKQVAQDFLDFIS--GAELVIHNAAFDVGFIDYEFSLLGAPFGKVSDYCS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+KHP +N+L++LCKRYGI SHR HGALLDS +L+DVY+ M G + ++ Sbjct: 118 VVDTLMMARKKHPGQKNNLDALCKRYGIDNSHRDLHGALLDSEILADVYLAMTGGQTSLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDR 239 +ED +EE V I+ +R R ++ EL EH + + + K A +W + Sbjct: 178 LH---SEDGGTEEEASEVRRIN-TQRPSLRVIRASEAELAEHARQLDAVEKAAGFSLWRK 233 >gi|307824649|ref|ZP_07654873.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum SV96] gi|307734303|gb|EFO05156.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum SV96] Length = 241 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 100/241 (41%), Positives = 144/241 (59%), Gaps = 17/241 (7%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTGL+ + RIIEIG VEL++ T + F ++ P R A+++HGIT Sbjct: 9 RLVVLDTETTGLNPQEGHRIIEIGCVELVNRRLTGKRFHTYINPE-RIIDDGAIEVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSRI 123 ++FL+DKP F+ + +F F Q+AE + HNA FDVGFIN E R+N D S++ Sbjct: 68 NQFLEDKPCFADVVKDFIAFI--QDAELVIHNAPFDVGFINYEFSRLNSQTGTVTDYSKV 125 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL+ AR+KHP RN L++LCKRYGI SHR HGALLD+ +L+DV++ M G S + Sbjct: 126 FDTLTYARKKHPGQRNSLDALCKRYGIDNSHRDLHGALLDAEILADVFLLMTGGQSSL-- 183 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTL---GKNAIWD 238 +E + +E I L D+P R T+EEL+ H + ++ + G IW+ Sbjct: 184 ---LDEGQGRQEGAAVNREIKHLSADRPALKIIRCTEEELNAHQQRLEAIEKAGGGCIWN 240 Query: 239 R 239 + Sbjct: 241 Q 241 >gi|254472171|ref|ZP_05085571.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062] gi|211958454|gb|EEA93654.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062] Length = 236 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 97/239 (40%), Positives = 148/239 (61%), Gaps = 8/239 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I FD ETTGL+ DR++EIG VEL+++ T RT +++ P R EA ++HG+ Sbjct: 1 MREISFDTETTGLNPLDGDRLVEIGGVELINFIPTGRTCHLYVNPQ-RDMPEEAFRIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF DF +A + HNA FD+GFIN EL R NK + ++++D Sbjct: 60 SAEFLSDKPVFADVADEFLDFVG--DARLVIHNAPFDMGFINMELARCNKPKISNTQVLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRK P+ L++LC RYGI S R HGALLD+ LL++VY++M GG Q N G Sbjct: 118 TLKLARRKFPTGSVSLDALCSRYGIDNSKRVYHGALLDAELLAEVYLEM-NGGKQKNLGL 176 Query: 186 KTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 +++ + + + I+ +R PL +++EE++ H K I + + W++Y+ Sbjct: 177 MPDDEAIDLDNIGDDQPKQRIAAKQRPVPLSPALSEEEIEAHAKFIAGMKTDPAWNKYL 235 >gi|319404918|emb|CBI78518.1| DNA polymerase III epsilon chain [Bartonella sp. AR 15-3] Length = 235 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 104/235 (44%), Positives = 150/235 (63%), Gaps = 4/235 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+ ++DRIIEIG +E+++ T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVIAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LKD+ +F I DF + NA +AHNA FD+GF+NAEL R+NK + +IDT Sbjct: 61 NEHLKDEKNFEDIVDALLDFID--NATIVAHNANFDIGFLNAELGRVNKPLVSSDNVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LSIARR+ P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ GG Q F F Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELI-GGKQGIFSFD 177 Query: 187 TNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E+ + + +K R + L R++K+E + H I+ +G A+W+R+ Sbjct: 178 NYENFDVMNVQDSKNVFYTVKMRSQALPQRLSKQEKNMHANLIKKIGDKALWNRF 232 >gi|319406407|emb|CBI80047.1| DNA polymerase III epsilon chain [Bartonella sp. 1-1C] Length = 235 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 105/237 (44%), Positives = 150/237 (63%), Gaps = 8/237 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+ ++DRIIEIG +E+++ T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLNKESDRIIEIGCIEMVNRYLTGRRFHVYLNPQGVVIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LKD+ F I DF + A +AHNA FD+GF+NAEL+R+NK ++ +IDT Sbjct: 61 NERLKDEKKFDDIVDALLDFID--GATIVAHNANFDIGFLNAELERVNKPLINSDNVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LSIARR+ P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ GG Q F F Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELI-GGKQGIFSFD 177 Query: 187 TNED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E ++ K P I + R + L R++K+E D H I+ +G A+W+ + Sbjct: 178 NYESCDVMNVQDNKNAFPTIKI--RSQALPQRLSKQEKDMHIDLIKKIGDKALWNHF 232 >gi|49474836|ref|YP_032877.1| DNA polymerase III epsilon chain [Bartonella henselae str. Houston-1] gi|49237641|emb|CAF26821.1| DNA polymerase III epsilon chain [Bartonella henselae str. Houston-1] Length = 235 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 104/234 (44%), Positives = 147/234 (62%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD + DRIIEIG VE++D T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRRFHVYLNPQGVIIPDEVVAVHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK++ SFS I EF +F N A IAHNA FD+GF+NAEL R NK + I+DT Sbjct: 61 NERLKNEKSFSDIADEFLEFIN--GATMIAHNASFDIGFLNAELARANKPLISVDNILDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRK P + N L+ LCKR+GI SHR HGALLD+ +L+D+YI+++ GG Q F Sbjct: 119 LAMARRKFPMAPNSLDVLCKRFGIDNSHRVFHGALLDAEILADIYIELI-GGKQGVLVFG 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 N + E ++ R + L R++ +E H ++ +G+ A+W+ + Sbjct: 178 NNGSVHEESENDKNAFSAVKIRPQNLSPRLSVQEKTMHADFVKKMGEKALWNSF 231 >gi|240849687|ref|YP_002971075.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup] gi|240266810|gb|ACS50398.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup] Length = 235 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 107/235 (45%), Positives = 152/235 (64%), Gaps = 5/235 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD + DRIIEIG VE++D T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRQFHVYLNPEGVIIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK++ SFS I EF +F + A IAHNA FD+GFINAEL+R+NK + I+DT Sbjct: 61 NERLKNEKSFSDIVDEFLEFI--KGATMIAHNASFDIGFINAELKRVNKPLISVDNILDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGF 185 L++ARRK P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ G + FG Sbjct: 119 LAMARRKFPMGPNSLDILCKRFGIDNSHRVLHGALLDAEILADVYIELIGGKQGVLGFGN 178 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + D + +K T + + R + L +R++ +E H I T+G+ A+W+ + Sbjct: 179 RRGVDEHIQNDKDTSYAVKI--RPQALPSRLSMQEKRLHADFINTMGEKALWNNF 231 >gi|83950782|ref|ZP_00959515.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius nubinhibens ISM] gi|83838681|gb|EAP77977.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius nubinhibens ISM] Length = 231 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 98/235 (41%), Positives = 140/235 (59%), Gaps = 7/235 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVEL ++ T T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPHSGDRIVEIGAVELFNHMPTGETYHQYINPE-RSMPQEAFQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F I F DF +A+ I HNA FD+ F+NAEL + + + ID Sbjct: 60 GDDFLRDKPVFKRIGQAFLDFIG--DAKLIIHNAAFDMKFLNAELGWMGLPQIPWEQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARR+ P S L++LC+R+ I S R+ HGALLDS +L++VY++++ GG Q +F Sbjct: 118 TLEIARRRFPGSPASLDALCRRFNIDNSSRTLHGALLDSEILAEVYLELI-GGRQPDFSL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 K E E + + N R PL +R+T+ E + H + +G AIW +Y Sbjct: 177 KVVEKAP--EPGEDMGNWRPKPRPTPLPSRLTEAEKNAHATFVGGMGDTAIWRKY 229 >gi|332306364|ref|YP_004434215.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173693|gb|AEE22947.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 235 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 102/241 (42%), Positives = 146/241 (60%), Gaps = 14/241 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D + RIIEIG VEL++ T TF V++ P R EA+++HGI Sbjct: 1 MRQIVLDTETTGIDPRQGHRIIEIGCVELVNRRLTGNTFHVYINPQ-RLIEQEAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPS 121 T+E+L DKP F+ I ++F F N A+ + HNA FDVGF++ E R+ K D Sbjct: 60 TNEYLLDKPVFADIAADFAQFIN--GAQLVIHNAPFDVGFMDHEFDRVASMVGKKTADMC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR+ HP +N+L++LCKRYGI SHR HGALLDS +L+DVY+ M G + + Sbjct: 118 TVLDTLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTAL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238 N K+N D + E + SL ++ R T +EL EH+K + + G + +W Sbjct: 178 NLSGKSNSDGGSQVEPIRRLDPSL---NQLKVLRATADELAEHEKRLDLVTKEGGSCLWR 234 Query: 239 R 239 Sbjct: 235 E 235 >gi|319898197|ref|YP_004158290.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73] gi|319402161|emb|CBI75687.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73] Length = 235 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 105/235 (44%), Positives = 149/235 (63%), Gaps = 4/235 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+ ++DRIIEIG +E+++ T R F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LKD+ F I DF + A +AHNA FD+GF+NAEL+R+NK + + +IDT Sbjct: 61 NERLKDEKKFDDIVDALLDFID--GATIVAHNANFDIGFLNAELERVNKPLVSINHVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+IARR+ P+ N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ GG Q FGF Sbjct: 119 LAIARRRFPTGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELI-GGKQGIFGFD 177 Query: 187 TNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ED + K R PL R++K+E D H I+ +G A+W+ + Sbjct: 178 NCEDFDVMSVQDGKNAFHTTKIRFHPLPQRLSKQEKDMHANLIKKIGDKALWNHF 232 >gi|254485580|ref|ZP_05098785.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101] gi|214042449|gb|EEB83087.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101] Length = 228 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 149/233 (63%), Gaps = 8/233 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL+ + T +T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMGHMATGKTYHQYINPE-RGMPDEAFQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I +F DF +++ I HNA FD+ F+NAEL+ + + ++ +D Sbjct: 60 GDDFLRDKPKFAQIGQDFLDFIG--DSKLIIHNAAFDIKFLNAELKWMGLPQIPWAQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++ P S L++LC+R+ I + R+ HGALLDS +L++VY++++ GG Q +FG Sbjct: 118 TLAIARKRFPGSPASLDALCRRFNIDNTSRTLHGALLDSEILAEVYLELI-GGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 ++ ++E T + + R PL +RI+++E H + + LG A+W Sbjct: 177 S---NQPQRKEGDTSVDWTPKPRPNPLPSRISQDEAAAHAEFVSKLGDGAVWK 226 >gi|163867311|ref|YP_001608505.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476] gi|161016952|emb|CAK00510.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476] Length = 235 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 107/234 (45%), Positives = 149/234 (63%), Gaps = 3/234 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD + DRIIEIG VE++D T F V+L P G E + +HG+T Sbjct: 1 MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGCQFHVYLNPEGVIIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LK++ SFS I EF +F N A IAHNA FD+GFINAEL+R+NK + IIDT Sbjct: 61 NERLKNEKSFSDIVDEFLEFIN--GATMIAHNASFDIGFINAELKRVNKPLISVDNIIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRK P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ GG Q GF Sbjct: 119 LAMARRKFPMGPNSLDILCKRFGIDNSHRVLHGALLDAEILADVYIELI-GGKQGVLGFD 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + + T + ++ R + L +R++ +E H I +G+ A+W+ + Sbjct: 178 NKRNLDEHIQNDTDMSYAVKFRPQALPSRLSAQEKKLHADFINKMGEKALWNTF 231 >gi|118591451|ref|ZP_01548849.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM 12614] gi|118436123|gb|EAV42766.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM 12614] Length = 237 Score = 252 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 100/239 (41%), Positives = 150/239 (62%), Gaps = 9/239 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I FD ETTGL+ + DR++EIG VEL+++ T +++ V++ P R EA ++HG+ Sbjct: 1 MREISFDTETTGLNPRGGDRLVEIGGVELINHVATGKSYHVYINPQ-RDMPEEAFRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F + EF +F +A + HNA FD+GFIN EL+R + + S+++D Sbjct: 60 SVEFLSDKPLFEHVADEFLEFVG--DATLVIHNAAFDMGFINMELERAGRRTIPNSQVLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHPS N L++LC RYGI S R KHGALLD+ +L++VY++++ GG Q G Sbjct: 118 TLDLARRKHPSGPNSLDALCSRYGIDNSKRIKHGALLDAEILAEVYLELI-GGRQTALGL 176 Query: 186 KTNEDRFFKE----EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 T+E+ E + + KR PL + + EL+ H I+ +G +AIW +Y Sbjct: 177 ITDEEESSSASASFEPGELGTFNARKRPTPLQRLLQESELEAHKAFIEGMGDSAIWSKY 235 >gi|109898679|ref|YP_661934.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] gi|109700960|gb|ABG40880.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] Length = 235 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 99/241 (41%), Positives = 145/241 (60%), Gaps = 14/241 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D + RIIEIG VELL+ T TF V++ P R EA+++HGI Sbjct: 1 MRQIVLDTETTGIDPRQGHRIIEIGCVELLNRRLTGNTFHVYVNPQ-RLIEQEAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPS 121 T+E+L DKP F+ + ++F F + A+ + HNA FDVGF++ E R+ K D Sbjct: 60 TNEYLLDKPLFADVAADFVKFIS--GAQLVIHNAPFDVGFMDHEFARVAAMAGKKTSDMC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR+ HP +N+L++LCKRYGI SHR HGALLDS +L+DVY+ M G + + Sbjct: 118 TVLDTLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTDL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238 N K+N D + E+ + ++ R T +EL EH+K + + G + +W Sbjct: 178 NLSGKSNSDGGSQVERI---RRLDPQLNQLKVLRATADELVEHEKRLDLVNKEGGSCLWR 234 Query: 239 R 239 Sbjct: 235 E 235 >gi|292493431|ref|YP_003528870.1| DNA polymerase III subunit epsilon [Nitrosococcus halophilus Nc4] gi|291582026|gb|ADE16483.1| DNA polymerase III, epsilon subunit [Nitrosococcus halophilus Nc4] Length = 242 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 138/246 (56%), Gaps = 12/246 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K RIIEIG VEL++ +T +TF +L P R+ ALK+HG+ Sbjct: 1 MRQIILDTETTGLEPKEGHRIIEIGGVELINRRRTGQTFHCYLNPE-RRVDEGALKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122 ++EFL DKP F + EF F E AE + HNA FDVGF++ EL + + Sbjct: 60 SNEFLSDKPRFVEVAEEFLAFIRE--AELVIHNAPFDVGFLDHELSLLGSQWGKVSLYCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR++HP +N L++LCKRYG+ S R HGALLD+ +L+ VY+ M G + ++ Sbjct: 118 VLDTLVLARQRHPGQKNSLDALCKRYGVDNSRRDLHGALLDAEILAGVYLAMTGGQASLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 ED + + ++ KR R ++EE H + + G +W Sbjct: 178 LRGYGGEDSQSQPGEGKYRPVA-AKRPPLKVVRASEEERSAHQARLAAIDKVSGGACLWH 236 Query: 239 RYISSN 244 + S + Sbjct: 237 QIESPD 242 >gi|114762190|ref|ZP_01441658.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Pelagibaca bermudensis HTCC2601] gi|114545214|gb|EAU48217.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Roseovarius sp. HTCC2601] Length = 229 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 98/234 (41%), Positives = 140/234 (59%), Gaps = 7/234 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL ++ T T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPETGDRIVEIGAVELYNHVPTGETYHQYINPE-RSMPQEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I EF +F +++ + HNA FDV F+NAEL + L +D Sbjct: 60 GDDFLRDKPLFAQIVDEFLEFIG--DSKLVIHNATFDVKFLNAELGWSKRPLLPKDCAVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARRK P S L++LC+R+GI S R+ HGALLDS +L+DVY++++ GG Q + Sbjct: 118 TLAIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILADVYLELI-GGKQPDLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 R N +R +PL RIT EE H ++ LG+ A+W R Sbjct: 177 SPV--RQGGGSDGGDDNWRPQRRPEPLSPRITDEEKAAHAAFVEKLGEAALWSR 228 >gi|90420992|ref|ZP_01228896.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans SI85-9A1] gi|90334770|gb|EAS48546.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans SI85-9A1] Length = 239 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 111/239 (46%), Positives = 153/239 (64%), Gaps = 6/239 (2%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+IVFD ETTGLD +R+IEIG VEL ++ T + + F+ P GRK P A +HGI+ Sbjct: 1 MREIVFDTETTGLDPDVERVIEIGGVELWNHIPTGKNYHAFIRPAGRKVDPAAFDVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+FL DKP FS I EF +FF+ A+ IAHNA FDV F+NAEL+RI++ P+DPS +IDT Sbjct: 61 DDFLADKPLFSEIADEFLEFFS--GAKLIAHNAAFDVRFLNAELKRIDQPPIDPSVVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +ARRK P + L++LC R+ + S R KHGALLDS LL++VYI+++ GG Q G Sbjct: 119 LPMARRKFPMAPATLDALCSRFSVDTSRRDKHGALLDSELLAEVYIELI-GGRQAALGLA 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245 ED + + R PL +R++++E+ H + TLG AIW Y+ + Sbjct: 178 VEEDAHEDADGNV---WRIAPRPVPLPSRLSQDEIVRHRAFVSTLGDEAIWWNYLERPE 233 >gi|319403493|emb|CBI77072.1| DNA polymerase III epsilon chain [Bartonella rochalimae ATCC BAA-1498] Length = 235 Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 101/235 (42%), Positives = 147/235 (62%), Gaps = 4/235 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGL+ ++DRIIEIG +E+++ T R F V+L P E + +HG+T Sbjct: 1 MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQDVIIPDEVVAIHGLT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E LKD+ F I DF + +A +AHNA FD+GF+NAEL+R+NK ++ +IDT Sbjct: 61 NERLKDEKKFDDIVDALLDFID--DATIVAHNANFDIGFLNAELERVNKPLINSDNVIDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 LSIARR+ P N L+ LCKR+GI SHR HGALLD+ +L+DVYI+++ GG Q F F Sbjct: 119 LSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELI-GGKQGIFSFD 177 Query: 187 TNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E + ++ R + L R++K+E D H I+ +G A+W+ + Sbjct: 178 NYESCDVMNVQDNKNAFYTIKTRSQALPQRLSKQEKDMHADLIKKIGDKALWNHF 232 >gi|163745117|ref|ZP_02152477.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45] gi|161381935|gb|EDQ06344.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45] Length = 229 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 92/234 (39%), Positives = 141/234 (60%), Gaps = 8/234 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL+++ T T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMNHMATGETYHQYINPE-RGMPEEAFQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I F DF ++ I HNA FD+ F+NAEL+ + + + +D Sbjct: 60 GDDFLRDKPKFAQIGKSFLDFIGT--SKLIIHNAAFDIKFLNAELRWMGLPQIPWEQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR++ P S L++LC+R+GI + R+ HGALLDS +L++VY++++ GG Q +F Sbjct: 118 TLEIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLELI-GGRQPDFAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + +R E + R PL +R+T+ E H I LG + +W + Sbjct: 177 SSAPERKSGEPDT---RWTPKARPNPLPSRLTEAEAAAHADFIGKLGDDVLWKQ 227 >gi|159045988|ref|YP_001534782.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] gi|157913748|gb|ABV95181.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] Length = 230 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 88/233 (37%), Positives = 141/233 (60%), Gaps = 7/233 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DR++EIG VEL ++ T R + ++ P R A ++HG+ Sbjct: 1 MREIVLDTETTGFEPSEGDRLVEIGGVELFNHVPTGRVYHQYINPQ-RSMPQSAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL DKP F+ + F DF +A+ + HNA FD+ F+NAEL + K L + ID Sbjct: 60 GDDFLADKPLFAEVAEAFLDFIG--DAKLVIHNAAFDMKFLNAELGWLGKPLLPMEQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARRK P S L++LC+R+G+ S R KHGALLDS +L++VY++++ G G Sbjct: 118 TLAIARRKFPGSPASLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIGGQQP---GL 174 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + + + + ++ R PL +R++++E H +++LG++A+W Sbjct: 175 ELSSVQTPSTQNVDNGHLRARPRPAPLPSRVSEKEKAAHAAFVESLGQSALWR 227 >gi|163738000|ref|ZP_02145416.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis BS107] gi|163742604|ref|ZP_02149990.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis 2.10] gi|161384189|gb|EDQ08572.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis 2.10] gi|161388616|gb|EDQ12969.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis BS107] Length = 245 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 145/246 (58%), Gaps = 19/246 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVELL++ T TF V++ P R +A K+HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPQ-RSMPQDAFKVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F+ + +F DF ++++ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQQPGPGAVTLRDKPVFAKVGQKFLDFV--RDSKMVIHNAAFDMKFLNAELDW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L + +DTL+IAR++ P S L++LC+R+ I S+R+ HGALLDS +L+DVY+ Sbjct: 118 MGLPKLPMDQAVDTLAIARKRFPGSPATLDALCRRFNIDNSNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ GG Q +FG + D+ T + R PL +R+T++E + H + +G Sbjct: 178 ELI-GGRQPDFGLSASNDKSSSGSVVT-DDWRPTARPSPLPSRLTEQEQEAHANFVAKMG 235 Query: 233 KNAIWD 238 A+W+ Sbjct: 236 DAALWN 241 >gi|260429270|ref|ZP_05783247.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] gi|260419893|gb|EEX13146.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] Length = 230 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 96/234 (41%), Positives = 144/234 (61%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL ++ T +T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPETGDRIVEIGAVELYNHVPTGKTYHQYINPE-RSMPNEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I +F +F +A+ + HNA FDV F+NAEL+ + L ID Sbjct: 60 GDDFLRDKPLFAQIVDDFLEFIG--DAKLVIHNAAFDVKFLNAELRWSKRPQLPRDCAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARRK P S L++LC+R+GI S R+ HGALLDS +L+DVY++++ GG Q + Sbjct: 118 TLEIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILADVYLELI-GGKQPDLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 T + + + + +R L +R+++EE H ++ LG NA+W R Sbjct: 177 -TPAGQKSGADSASAGDWRPQRRAVALPSRLSEEEKAAHAAFVEKLGANALWTR 229 >gi|332141113|ref|YP_004426851.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327551135|gb|AEA97853.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 239 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 137/240 (57%), Gaps = 16/240 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D K RIIEIG VE+++ T F V++ P GR EA+++HGI Sbjct: 1 MRQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINP-GRHIEQEAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPS 121 T+EFL DKP+F+ + EF +F + A+ + HNA FDVGF++ E Sbjct: 60 TNEFLTDKPTFAQVAQEFVNFI--KGAQLVIHNAPFDVGFMDHEFGMEPSTKGVITNQIC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL++AR+ HP +N+L++LCKRYGI SHR+ HGALLD+ +L+DVY+ M G +++ Sbjct: 118 DVLDTLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238 E T K +K + + +EL +H+ + + G +W Sbjct: 178 KLA-----SSGGSETDSTAIRRVQRKTNKLKVIKASADELTQHEARLDIVEKAGGKCLWR 232 >gi|262276480|ref|ZP_06054289.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] gi|262220288|gb|EEY71604.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886] Length = 247 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 96/252 (38%), Positives = 148/252 (58%), Gaps = 17/252 (6%) Query: 2 IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 ++ + R IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ Sbjct: 1 MKASYDRIIVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REI 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN- 114 PEA+ +HGITDEFL+DKPS++ I +EF +F + AE +AHNA FD GF++ E Q ++ Sbjct: 60 DPEAISVHGITDEFLRDKPSYADIHAEFLEFI--KGAELVAHNAPFDTGFMDHEFQMLDP 117 Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 SIGKTGDFCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + + FG + D ++ K R + +EL EH+ + + Sbjct: 178 LMTGGQTTLKFGGSESSD---QDSGGEAIRRVEAGTKKLKIIRASADELKEHEAQLDVIE 234 Query: 233 KN--AIWDRYIS 242 K +W + S Sbjct: 235 KKGSCLWRQQES 246 >gi|149204383|ref|ZP_01881350.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035] gi|149142268|gb|EDM30315.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035] Length = 231 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 96/235 (40%), Positives = 139/235 (59%), Gaps = 6/235 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL ++ T RTF ++ P R A +HG+ Sbjct: 1 MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQ-RAMPEAAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I EF DF Q+A + HNA FD+ F+NAEL + L + +D Sbjct: 60 GDDFLRDKPLFAEIAQEFLDFV--QDARLVIHNAAFDMKFLNAELGWLKLPQLPWDQAVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR+K P S L++LC+R+ I S R+ HGALLDS +L++VY++++ GG Q +F Sbjct: 118 TLAIARKKFPGSPASLDALCRRFQIDNSARTLHGALLDSEILAEVYLELI-GGRQPDFVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 T T + R PL +R+T E D H + +G A+W ++ Sbjct: 177 ATGPTAKSGGSTDTA-HWRPQPRPTPLASRLTATENDAHQAFVAKMGDAALWRKF 230 >gi|330829021|ref|YP_004391973.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565] gi|328804157|gb|AEB49356.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565] Length = 244 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 97/252 (38%), Positives = 146/252 (57%), Gaps = 21/252 (8%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M R+I+ D ETTG+++ RIIEIG VE+++ T + V++ P+ R Sbjct: 1 MNTPQLNRQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHYHVYIKPD-RL 59 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 PEA+++HGITDEFL+DKPSFS I EF +F + AE IAHNA FDV F++ E ++ Sbjct: 60 VDPEAIQVHGITDEFLRDKPSFSQIADEFLEFI--RGAELIAHNAPFDVSFMDYEFSKLG 117 Query: 115 KDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + D I DTL++AR P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 LNFKTADICTITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTI-- 228 M G +++N ++NE+ ++ +I L+ ++P R E H+ + Sbjct: 178 LMTGGQTKLNLATESNENENNQDT-----SIRRLESNRPAIKVVRACAEVQALHEARLDL 232 Query: 229 -QTLGKNAIWDR 239 Q G + +W + Sbjct: 233 VQKKGGSCLWRQ 244 >gi|192288734|ref|YP_001989339.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris TIE-1] gi|192282483|gb|ACE98863.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris TIE-1] Length = 232 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 102/240 (42%), Positives = 144/240 (60%), Gaps = 11/240 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T RT+ +L P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF +F +A + HNA FD+GFINAEL R+++ P+ R++D Sbjct: 60 SSEFLADKPLFAHVADEFLEFIG--DAPLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFG 184 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ SQ+ Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILA 177 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 E E + +R PL R+T+ +L+ H I T+G+ AIW Y+ + Sbjct: 178 DVPAEVVGAASENR------RRQRPAPLPNRLTEADLEAHRAFIATMGEKAIWPDYLPAG 231 >gi|59712542|ref|YP_205318.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114] gi|59480643|gb|AAW86430.1| DNA polymerase III epsilon subunit [Vibrio fischeri ES114] Length = 243 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 95/240 (39%), Positives = 140/240 (58%), Gaps = 16/240 (6%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++ + RI+EIGAVE+++ T F V++ P+ R EA+ Sbjct: 10 RIIVLDTETTGMNFSGGPVYEGHRIVEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAID 68 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITDEFL DKP + I EF +F + AE +AHNA FDVGF++ E ++NK Sbjct: 69 VHGITDEFLYDKPEYKDIHDEFLEFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIGTTD 126 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +I DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 127 QYCKITDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 186 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + ++F N +E K + + R R T +EL+ H+K + +G +W Sbjct: 187 TSLSFSSGENSSDSDEETIKRLNS----GRKGLKVLRATADELEAHEKRLDIVGDACLWR 242 >gi|269101978|ref|ZP_06154675.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268161876|gb|EEZ40372.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 241 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 144/247 (58%), Gaps = 17/247 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IVFD ETTG++ + RIIEIGAVE+++ T TF V++ P+ R Sbjct: 1 MKATNERIIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPD-RAID 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA+++HGITDEFL KP+++ I EF DF Q AE +AHNA FD+GF++ E +++ Sbjct: 60 PEAIEVHGITDEFLVGKPTYAEIHQEFMDFI--QGAELVAHNAPFDIGFMDYEFRKLGLK 117 Query: 117 PL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L + ++ DTL +A+R P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 DLKTDEMCKVTDTLDMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G + + + + E + + + R R + +E+ H+ + +GK Sbjct: 178 MTGGQTSLQLSSGESSAAGAENEIRRLTS----GRKALKVIRASADEIAAHEDRLDLIGK 233 Query: 234 NA--IWD 238 A IW Sbjct: 234 KADVIWR 240 >gi|27375751|ref|NP_767280.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] gi|27348889|dbj|BAC45905.1| DNA polymerase III epsilon chain [Bradyrhizobium japonicum USDA 110] Length = 239 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 138/239 (57%), Gaps = 10/239 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T +T+ V++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEMFNRMPTGQTYHVYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL KP F + F +F +A + HNA FD+ FINAEL RI + + +++D Sbjct: 60 SAEFLSTKPVFHEVADAFLEFIG--DAPLVIHNASFDISFINAELDRIKRAAIPREQLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFG 184 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VY+ ++ SQ+ Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQLLLA 177 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 + E R + +R PL RI+ E + H I TLG AIW+ ++ + Sbjct: 178 SEAEEIRINAAG-----DTPRRQRPTPLAPRISDAEREAHRAFIATLGDKAIWNEFLPA 231 >gi|326796075|ref|YP_004313895.1| DNA polymerase III subunit epsilon [Marinomonas mediterranea MMB-1] gi|326546839|gb|ADZ92059.1| DNA polymerase III, epsilon subunit [Marinomonas mediterranea MMB-1] Length = 235 Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 94/238 (39%), Positives = 136/238 (57%), Gaps = 10/238 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG+D K RIIEIG VE++ T R F V++ P+ R+ EA ++HGI Sbjct: 1 MRQVVLDTETTGIDPKQGHRIIEIGCVEMIGRKLTKRHFHVYINPD-REVEEEAFQVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 ++EFL DKP F I EF DF + AE I HNA FDVGF++ E + P D I Sbjct: 60 SNEFLADKPRFHEIAQEFLDFI--RGAELIIHNAPFDVGFMDHEFSMLGNFPKTRDVCEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR+KHP ++N+L++LC+RYGI SHR HGALLDS +L+DVY+ M G + + Sbjct: 118 FDSLVFARKKHPGAKNNLDALCRRYGIDNSHRELHGALLDSEILADVYLLMTGGQTSLGL 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 + + + +S R R + E+ H++ + + K ++W Sbjct: 178 SMNDGSEGGDSDNVGEIRRLSP-DRPMLKVLRANETEMAAHEERLDLIDKKSGQSLWR 234 >gi|39933378|ref|NP_945654.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris CGA009] gi|39653003|emb|CAE25745.1| putative DNA polymerase III epsilon chain [Rhodopseudomonas palustris CGA009] Length = 232 Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 102/240 (42%), Positives = 143/240 (59%), Gaps = 11/240 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T RT+ +L P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF +F +A + HNA FD+GFINAEL R+++ P+ R++D Sbjct: 60 SSEFLADKPLFAHVADEFLEFIG--DAPLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFG 184 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ SQ+ Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILA 177 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 E E + +R PL R+T +L+ H I T+G+ AIW Y+ + Sbjct: 178 DVPVEVAGAASESR------RRQRPAPLPNRLTDADLEAHRTFIATMGEKAIWPDYLPAG 231 >gi|119385539|ref|YP_916595.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] gi|119375306|gb|ABL70899.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] Length = 239 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 97/241 (40%), Positives = 146/241 (60%), Gaps = 5/241 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVEL+++ T RTF V++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPDTGDRIVEIGAVELMNHLPTGRTFHVYINPE-RPMPQEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I ++F F + +A+ + HNA FD+ F+NAEL+ + + SR +D Sbjct: 60 GDDFLRDKPKFAEIAADFVAFIGD-DAKLVIHNASFDMKFLNAELRMVGHATMPYSRAVD 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR P ++N L++LC+R+ I S+R+ HGALLDS LL++VY+ + GG Q Sbjct: 119 TLEIARSMFPGAQNSLDALCRRFRIDNSNRTLHGALLDSELLAEVYLAL-RGGRQPGLVL 177 Query: 186 KTNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 ++ + +R +PL RIT+ E + H + +G+ A+W RY +N Sbjct: 178 ESGPMHGGTGTGAQAEGGTPRGQRPRPLAPRITEAEAEAHAAFVAKMGEKAVWLRYGDAN 237 Query: 245 Q 245 Sbjct: 238 H 238 >gi|332993503|gb|AEF03558.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2] Length = 238 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 141/240 (58%), Gaps = 16/240 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D K R+IEIG VEL++ T F V++ P GR+ EA+ +HGI Sbjct: 1 MRQIVLDTETTGIDPKEGHRVIEIGCVELVNRKLTGNHFHVYINP-GRQIEQEAIDVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL----QRINKDPLDPS 121 T+EFL DKP+F + +F +F + A+ + HNA FDVGF++ E + D Sbjct: 60 TNEFLTDKPTFRDVAEDFVNFI--RGAQLVIHNAPFDVGFMDHEFGMEPKTRGVITKDIC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL++AR+ HP +N+L++LCKRYGI SHR HGALLD+ +L+DVY+ M G +++ Sbjct: 118 SVLDTLAVARKMHPGQKNNLDALCKRYGIDNSHRELHGALLDAEILADVYLLMTGGQTKL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238 N K + + ++ N +K + + +EL +H+ + + G +W Sbjct: 178 NLASKGSGENQSDALRRLNRN-----GNKLKVIKASADELAQHESRLDIVEKAGGKCLWR 232 >gi|126738511|ref|ZP_01754216.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6] gi|126720310|gb|EBA17016.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6] Length = 242 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 147/247 (59%), Gaps = 20/247 (8%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVEL ++ T +T+ ++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELFNHMPTGKTYHEYINPE-RSMPHEAFGVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F+ + F DF Q+++ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQQPEKGQVTLRDKPVFAKVGQSFLDFV--QDSKLVIHNASFDMKFLNAELDW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L ++ IDTL++AR++ P + L++LC+R+ I S+R+ HGALLDS +L++VY+ Sbjct: 118 MGLPKLPLNQAIDTLAVARKRFPGAPATLDALCRRFQIDNSNRTLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ GG Q +FG T+ +E + + +R PL +R+T+EEL HD ++ +G Sbjct: 178 ELI-GGRQPDFGLSTS--TSGSKEGQVAEDWRPTQRATPLPSRLTQEELSAHDAFVEKMG 234 Query: 233 KNAIWDR 239 A+W + Sbjct: 235 DAALWRQ 241 >gi|260772249|ref|ZP_05881165.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] gi|260611388|gb|EEX36591.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14] Length = 246 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 91/243 (37%), Positives = 139/243 (57%), Gaps = 18/243 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE++D T R F V+L P+ R+ P+A++ Sbjct: 11 RIVVLDTETTGMNFEGGPHYEGHRIIEIGAVEIIDRKLTGRHFHVYLKPD-REIQPQAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITD FL DKP + + EF DF + AE +AHNA FDVGF++ E ++N Sbjct: 70 VHGITDAFLVDKPQYKEVHQEFLDFI--KGAELVAHNASFDVGFMDYEFAKVNPAIGKTE 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +I DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 QYCKITDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 + + F + + V +R R + +E++ H + + + K+ + Sbjct: 188 TSLQFSASSQSGEPAGSFVQRVQG----ERKNLKVLRASADEIEAHQQRLDVVEKSGICL 243 Query: 237 WDR 239 W + Sbjct: 244 WRQ 246 >gi|260775260|ref|ZP_05884157.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260608441|gb|EEX34606.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 246 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 138/246 (56%), Gaps = 18/246 (7%) Query: 5 NKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 N R +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ P+ Sbjct: 8 NHNRIVVLDTETTGMNREGGPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPD 66 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---K 115 A+++HGITDEFL DKP + + EF +F + AE +AHNA FD GF++ E ++ Sbjct: 67 AVEVHGITDEFLVDKPEYQDVHKEFLEFI--KGAELVAHNAPFDTGFMDYEFNMLDPGIG 124 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 125 KTDDYCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMT 184 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK-- 233 G + + F + E K R R T +EL+ H + + K Sbjct: 185 GGQTSLQFNSGNADGNVGGESIKRAAG----GRKSLKVIRATADELEAHQNRLDLVEKSG 240 Query: 234 NAIWDR 239 + +W + Sbjct: 241 SCLWRQ 246 >gi|316931718|ref|YP_004106700.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris DX-1] gi|315599432|gb|ADU41967.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris DX-1] Length = 232 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 101/240 (42%), Positives = 143/240 (59%), Gaps = 11/240 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T RT+ +L P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHRYLNPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF +F + + HNA FD+GFINAEL R+++ P+ R++D Sbjct: 60 SAEFLADKPLFAQVADEFLEFIGDD--PLVIHNASFDIGFINAELSRLSRAPVPRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFG 184 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ SQ+ Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILA 177 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 E E + +R PL R+T +L+ H I T+G+ AIW Y+++ Sbjct: 178 DVPAEVVGAASENR------RRQRPAPLPNRLTDADLEAHRAFIATMGEKAIWPDYLAAG 231 >gi|254511557|ref|ZP_05123624.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium KLH11] gi|221535268|gb|EEE38256.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium KLH11] Length = 240 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 98/247 (39%), Positives = 145/247 (58%), Gaps = 22/247 (8%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL ++ T T+ V++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELWNHVATGETYHVYINPE-RGMPDEAFGVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L KDKP F+ + F DF +A+ + HNA FD+ F+NAEL Sbjct: 60 GPDLLENPRPPEKGEVTLKDKPVFAKVGQGFRDFVG--DAQLVIHNASFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + ++ IDTL+IAR++ P S L++LC+R+GI S+R HGALLDS +L++VY+ Sbjct: 118 MGVPLIPMAQAIDTLAIARKRFPGSPASLDALCRRFGIDNSNRVLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ GG Q +FG T+ + P R PL +RIT++E H K ++ LG Sbjct: 178 ELI-GGRQPDFGLSTSASNAAGGGDEWRPT----ARPTPLSSRITEDERAAHQKFVEGLG 232 Query: 233 KNAIWDR 239 ++A+W R Sbjct: 233 ESALWTR 239 >gi|254477303|ref|ZP_05090689.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11] gi|214031546|gb|EEB72381.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11] Length = 244 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 97/246 (39%), Positives = 144/246 (58%), Gaps = 20/246 (8%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVELL++ T TF V++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPAEAFGVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F+ + F DF ++++ I HNA FD+ F+N EL+R Sbjct: 60 GPDLLEPPQQPAPGAVTLRDKPVFAKVGKAFVDFV--RDSKMIIHNASFDMKFLNYELER 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L + +DTL+IAR++ P S L++LC+R+ I S+R+ HGALLDS +L+DVY+ Sbjct: 118 MGLAALPMDQAVDTLAIARKRFPGSPATLDALCRRFNIDNSNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ GG Q +FG T + K V + R PL RIT++E + H + +G Sbjct: 178 ELI-GGRQPDFGLSTAKSE--KSSTVQVDDWRPTARPSPLPPRITEQEKEAHAAFVAKMG 234 Query: 233 KNAIWD 238 + A+W+ Sbjct: 235 EGALWN 240 >gi|117619304|ref|YP_856106.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560711|gb|ABK37659.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 244 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 96/250 (38%), Positives = 141/250 (56%), Gaps = 17/250 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M R+I+ D ETTG+++ RIIEIG VE+++ T F V++ P+ R Sbjct: 1 MNTPQLNRQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHFHVYIKPD-RL 59 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 PEA+++HGITDEFL+DKPSFS I EF +F + AE IAHNA FDV F++ E ++ Sbjct: 60 VDPEAIQVHGITDEFLRDKPSFSQIADEFIEFI--RGAELIAHNAPFDVSFMDYEFGKLG 117 Query: 115 KDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + D I DTL++AR P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 LNFKTADICGITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---Q 229 M G +++N +++E+ + + T R R + E H+ + Q Sbjct: 178 LMTGGQTKLNLATESSEN---ESNQDTSIRRLESNRPPLKVIRASAEIEAVHEARLDLVQ 234 Query: 230 TLGKNAIWDR 239 G +W + Sbjct: 235 KKGGACLWRQ 244 >gi|182680101|ref|YP_001834247.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182635984|gb|ACB96758.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 236 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 103/240 (42%), Positives = 147/240 (61%), Gaps = 9/240 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + RIIEIG +E+L T + F V++ P R +A+++HGI Sbjct: 1 MREIVLDTETTGLDPAEGHRIIEIGCIEILHTIPTGQIFHVYIDPQ-RDIPEDAVRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL KP F+ I SEF F +A+ +AHNA FD+ F+NAEL + +P+D R++D Sbjct: 60 TAEFLAGKPVFADIASEFLAFIG--DAKLVAHNAAFDMRFLNAELGLLGLEPIDSERVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++ARR+HP + N L++LC RYGI + R+KHGALLDS +L+DVY +++ GG Q F Sbjct: 118 TLALARRRHPGASNSLDALCNRYGIDNTRRTKHGALLDSEILADVYAELL-GGRQAALTF 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245 +T +T +R PL + ++ +E D H I LG AIW Y+ + Sbjct: 177 ETATALRQDNTHQT----PFRQRPVPLESALSSQERDAHRAFIAKLGDKAIWVSYLPQPE 232 >gi|84514924|ref|ZP_01002287.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Loktanella vestfoldensis SKA53] gi|84511083|gb|EAQ07537.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Loktanella vestfoldensis SKA53] Length = 228 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 96/234 (41%), Positives = 139/234 (59%), Gaps = 8/234 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL+ + T RT+ ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGFEPSEGDRIVEIGAVELIGHMPTGRTYHQYINPQ-RTMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL DKP F I +F F +A+ + HNA FD+ F+NAEL ++K L +R +D Sbjct: 60 GDDFLADKPLFKDIADDFLTFIG--DAKLVIHNAAFDMKFLNAELGWLHKPALPMNRAVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARRK P S L++LC+R+GI + R+ HGALLDS +L++VY++++ GG Q +F Sbjct: 118 TLMIARRKFPGSPASLDALCRRFGIDNAARTLHGALLDSEILAEVYLELI-GGRQPDFAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 +K R PL +R+T EE H + +G +A+W R Sbjct: 177 ---AQGSADSTQKNGAAWRAGPRPAPLASRLTAEETAAHTAFVNAMGDDAVWKR 227 >gi|315634676|ref|ZP_07889960.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter segnis ATCC 33393] gi|315476624|gb|EFU67372.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter segnis ATCC 33393] Length = 253 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 94/249 (37%), Positives = 144/249 (57%), Gaps = 17/249 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 I+ N R+IV D ETTG++ + IIEIGAVE+++ T F +++ PN R Sbjct: 3 IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA+K+HGITDE L DKP FS I +EF ++ + AE + HNA FDVGF++ E ++N Sbjct: 62 PEAIKVHGITDEMLADKPDFSQIANEFIEYI--KGAELLIHNAPFDVGFMDYEFAKLNLP 119 Query: 117 PL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D ++ DTL++AR+ +P +N+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 120 IKTNDICQVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAM 179 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G + + F NE ++ + ++ T+EEL H + ++ + K Sbjct: 180 TGGQTSL---FDENESEIIQQVNEQQIQSAVAFSHNLRLLTPTEEELQAHLEYLKLINKK 236 Query: 234 ---NAIWDR 239 N +W R Sbjct: 237 SKDNCLWTR 245 >gi|254462819|ref|ZP_05076235.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium HTCC2083] gi|206679408|gb|EDZ43895.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium HTCC2083] Length = 224 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 91/228 (39%), Positives = 137/228 (60%), Gaps = 8/228 (3%) Query: 13 DIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG D + DRI+EIGAVEL++ T RT+ ++ P R +A ++HG+ D+FL+ Sbjct: 2 DTETTGFDPQQGDRIVEIGAVELINQMPTGRTYHQYINPE-RAMPDDAFQVHGLGDDFLR 60 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 DKP F I EF DF + + HNA FD+ F+NAEL +N L + +DTL+IAR Sbjct: 61 DKPVFKQIAQEFLDFVKDD--TMVIHNASFDMKFLNAELGWLNMKQLPMEQALDTLAIAR 118 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191 ++ P S L++LC+R+ I S+R+ HGALLDS +L++VY++++ GG Q Sbjct: 119 KRFPGSPASLDALCRRFNIDNSNRTLHGALLDSEILAEVYLELL-GGRQPGLVLANTGGS 177 Query: 192 FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 ++T KR PL +RIT+EE H ++ LG++A+W + Sbjct: 178 ASGGSEET---WRASKRPTPLPSRITEEEAKAHTAFVEKLGEDALWSK 222 >gi|134295347|ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4] gi|134138504|gb|ABO54247.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 244 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 93/239 (38%), Positives = 134/239 (56%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRSGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + + DF + AE I HNA FD+GF++AE R+ P + Sbjct: 60 TTEFLSDKPKFAEVADQIRDFV--KGAELIIHNAPFDLGFLDAEFARLGLPPFIEHCDGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLAEAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 +D ISL D P+ + +EL H + L K+ +W Sbjct: 176 VIDMLDDAGADGGTANGQRISLASLDLPVVA-ASDDELAAHQAQLDELDKSVKGTCVWR 233 >gi|99082698|ref|YP_614852.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040] gi|99038978|gb|ABF65590.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040] Length = 243 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 99/245 (40%), Positives = 145/245 (59%), Gaps = 21/245 (8%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVELL++ T TF V++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPQ-RSMPHEAFGVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L KDKP F+ + F DF ++++ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQPPAPGQVILKDKPLFAEVGQAFLDFV--RDSKMVIHNASFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +N L + IDTL++AR++ P S L++LC+R+GI S+R+ HGALLDS +L+DVY+ Sbjct: 118 MNLPQLPMDQAIDTLAMARKRFPGSPATLDALCRRFGIDNSNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ GG Q +FG + + N R+ PL +R+T EE HD+ + LG Sbjct: 178 ELI-GGRQPDFGLSA---QSSGGQNAVDTNWRPAPRETPLPSRLTAEEKAAHDEFVGKLG 233 Query: 233 KNAIW 237 ++A+W Sbjct: 234 EDALW 238 >gi|110677834|ref|YP_680841.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh 114] gi|109453950|gb|ABG30155.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh 114] Length = 228 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 98/234 (41%), Positives = 145/234 (61%), Gaps = 8/234 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL+ + T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGRTYHQYINPE-RSMPEEAFQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ + F DF +A+ + HNA FD+ F+NAEL IN + + ID Sbjct: 60 GDDFLRDKPKFAEVGQAFLDFIG--DAKLVIHNAAFDIKFLNAELGWINLPKIPWEQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR++ P S L++LC+R+GI + R+ HGALLDS +L++VY++++ GG Q +FG Sbjct: 118 TLDIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLELI-GGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + K T + + R PL +RIT+EE H + LG +A+W + Sbjct: 177 S---NIPQKSAGDTSVDWTPRPRPTPLPSRITEEEAAAHADFVAKLGDDAVWLK 227 >gi|152995731|ref|YP_001340566.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1] gi|150836655|gb|ABR70631.1| DNA polymerase III, epsilon subunit [Marinomonas sp. MWYL1] Length = 237 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 10/238 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG+D K RIIEIG VE++ TNR F V++ P+ R+ EA ++HGI Sbjct: 1 MRQVVLDTETTGIDPKQGHRIIEIGCVEMIGRKLTNRHFHVYINPD-REVEEEAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 ++EFL DKP F I EF+DF + AE I HNA FD+GF++ E RI P + + Sbjct: 60 SNEFLADKPRFHEIAQEFFDFI--KGAELIIHNAPFDIGFMDHEFARIGGYPKTAEVCGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR+KHP +N+L+ LC+RYGI SHR HGALLDS +L+DVY+ M G + + Sbjct: 118 FDSLVYARKKHPGQKNNLDILCRRYGIDNSHRELHGALLDSEILADVYLLMTGGQTSLGL 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 + + + + + S R R + EEL H++ + + K ++W Sbjct: 178 ASSSESESKEEGGVEEIRRFS-ADRPALKVIRASSEELKLHEERLDLIDKKSGQSLWR 234 >gi|330503134|ref|YP_004380003.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] gi|328917420|gb|AEB58251.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] Length = 252 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 96/255 (37%), Positives = 141/255 (55%), Gaps = 13/255 (5%) Query: 1 MIRKNKM-RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M +N + R +V D ETTG+ RIIEIG VELL T R F V+L P+ R+ Sbjct: 1 MTTENTVKRYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPD-REIDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115 A+ +HGIT+E++ DKP F + EF++F + A+ I HNA FDVGFIN E + + Sbjct: 60 AIAVHGITNEYVADKPRFREVADEFYEFI--KGAQLIIHNAAFDVGFINNEFALLGQSER 117 Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D D ++DTL +AR +HP RN L++LCKRYG+ S+R HGALLDS +L+DVY+ M Sbjct: 118 ADVSDYCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLAM 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 G + ++ + ++ T R + R ++EEL H + + K+ Sbjct: 178 TGGQTNLSLAGDGADGDGSGRQQATPIRRLDPSRARTRVIRASEEELAAHMARLAVIEKS 237 Query: 235 A----IWDRYISSNQ 245 A +W + S + Sbjct: 238 AGGPSLWAQLEKSPE 252 >gi|323495336|ref|ZP_08100414.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] gi|323310407|gb|EGA63593.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546] Length = 245 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 144/246 (58%), Gaps = 19/246 (7%) Query: 5 NKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 N+ R +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ P+ Sbjct: 8 NQHRIVVLDTETTGMNREGGPHYQDHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPD 66 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---K 115 A+++HGITDEFL DKP + + +EF +F + AE +AHNA FDVGF++ E ++ Sbjct: 67 AVEVHGITDEFLVDKPDYRDVHAEFLEFI--KGAELVAHNAPFDVGFMDHEFGMLDPSIG 124 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 125 KTVDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMT 184 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK-- 233 G + + F + + + K+ R R T +EL+ H + + K Sbjct: 185 GGQTSLQFNAGNSSEDGGEAIKRVASG-----RKSLKVLRATADELEAHQSRLDIVEKSG 239 Query: 234 NAIWDR 239 + +W + Sbjct: 240 SCLWRQ 245 >gi|310817168|ref|YP_003965132.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare Y25] gi|308755903|gb|ADO43832.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare Y25] Length = 224 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 94/227 (41%), Positives = 139/227 (61%), Gaps = 6/227 (2%) Query: 13 DIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D ETTG + + DRI+EIG VELL++ T RT+ ++ P R +A K+HG++ EFL Sbjct: 2 DTETTGFEPETGDRIVEIGCVELLNHLPTGRTYHQYINPQ-RDMPEDAFKVHGLSAEFLS 60 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 DKP F+ + +F DF +A + HNA FDV F+NAEL + K + P+R +DTL IAR Sbjct: 61 DKPLFAQVAQDFLDFIG--DANLVIHNAAFDVKFLNAELGWVKKPLIAPARAVDTLLIAR 118 Query: 132 RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191 R+ P ++N L++LC+R+GI S R+ HGALLDS +L++VY++++ GG Q +FG Sbjct: 119 RRFPGAQNSLDALCRRFGIDNSKRTLHGALLDSEILAEVYLELI-GGRQPDFGLSAAAST 177 Query: 192 FFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + T R PL TR+T++E H ++ LG A W+ Sbjct: 178 P-AQGNVTRSAWRPQPRPNPLPTRLTEDEAKAHAAFVEKLGPEAAWN 223 >gi|238026771|ref|YP_002911002.1| DNA polymerase III subunit epsilon [Burkholderia glumae BGR1] gi|237875965|gb|ACR28298.1| DNA polymerase III, epsilon subunit [Burkholderia glumae BGR1] Length = 240 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 94/240 (39%), Positives = 135/240 (56%), Gaps = 13/240 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VE+L+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEIGCVEMLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ I DF + E I HNA FD+GFI+AEL+R+ PL + + Sbjct: 60 TTEFLSDKPKFAEIAQALCDFV--RGGELIIHNAPFDIGFIDAELERLGMPPLLEHCNGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A+ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 D + + +S D P +++EL H + L K+ +W + Sbjct: 176 VIDMLGDTGDRGGETGGSRVSFASLDLP-VIAASEQELAAHQAQLDDLDKSVKGACVWRQ 234 >gi|259417863|ref|ZP_05741782.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] gi|259346769|gb|EEW58583.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] Length = 243 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 143/246 (58%), Gaps = 21/246 (8%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVELL++ T TF V++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPHEAFGVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L KDKP F+ + F DF ++++ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQPAAPGQVTLKDKPLFAEVGQAFLDFV--RDSKMVIHNASFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +N L + IDTL++AR++ P S L++LC+R+ I S+R+ HGALLDS +L+DVY+ Sbjct: 118 MNLRQLPMEQAIDTLAMARKRFPGSPATLDALCRRFSIDNSNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ GG Q +FG T + + N R PL +R+T EE H++ + LG Sbjct: 178 ELI-GGRQPDFGLST---QSGSGQNAADTNWRPSPRATPLPSRLTSEEKTAHEEFVAKLG 233 Query: 233 KNAIWD 238 A+W+ Sbjct: 234 AEALWN 239 >gi|255264769|ref|ZP_05344111.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62] gi|255107104|gb|EET49778.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62] Length = 231 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 98/234 (41%), Positives = 143/234 (61%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVELL++ T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPNEGDRIVEIGAVELLNHVPTGRTYHQYINPK-RSMPKEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F+ I F DF + I HNA FD+ F+NAEL +N+ L + +D Sbjct: 60 GDDFLRDKPFFADIAQAFVDFVGTD--KMIIHNAAFDMKFLNAELGWVNRPLLPMDQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARR+ P S L++LC+R+GI S R+ HGALLDS +L++VY++++ GG Q +FG Sbjct: 118 TLAIARRRFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLELI-GGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 T K T N R PL + +++EE H + LG + +W + Sbjct: 177 NTAPKEEKKFVTSTTDN-RPKSRSTPLVSLLSEEEATAHSAFVDKLGDDVLWKK 229 >gi|262170796|ref|ZP_06038474.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] gi|261891872|gb|EEY37858.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451] Length = 247 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 93/243 (38%), Positives = 140/243 (57%), Gaps = 17/243 (6%) Query: 7 MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ EA+ Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAI 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117 ++HGITDEFL+DKP + + EF DF ++AE +AHNA FDVGF++ E ++ Sbjct: 69 EVHGITDEFLRDKPEYKDVHDEFLDFI--KDAELVAHNAPFDVGFMDYEFAKLGGSVVKT 126 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 127 TDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235 + + F T + E+ S +R + +EL H + + K+ Sbjct: 187 QTSLQFSAAT---QNSGEQGAESLKRSRSERKALKVLHASADELQAHQDRLDLVAKSGTC 243 Query: 236 IWD 238 +W Sbjct: 244 LWR 246 >gi|206559631|ref|YP_002230392.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia J2315] gi|198035669|emb|CAR51556.1| DNA polymerase III, epsilon chain [Burkholderia cenocepacia J2315] Length = 244 Score = 244 bits (624), Expect = 8e-63, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 135/240 (56%), Gaps = 13/240 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + + DF ++AE I HNA FD+GF++AE R+ P + Sbjct: 60 TTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 +D +SL D P+ + +EL H + L K+ +W + Sbjct: 176 VIDMLDDASADGGAANGKRVSLAALDLPVVV-ASDDELAAHQAQLDELDKSVKGTCVWRQ 234 >gi|258621021|ref|ZP_05716055.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573] gi|262166312|ref|ZP_06034049.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223] gi|258586409|gb|EEW11124.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573] gi|262026028|gb|EEY44696.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223] Length = 247 Score = 244 bits (624), Expect = 8e-63, Method: Composition-based stats. Identities = 93/243 (38%), Positives = 137/243 (56%), Gaps = 17/243 (6%) Query: 7 MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ EA+ Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAI 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117 ++HGITDEFL+DKP + + EF DF + AE +AHNA FDVGF++ E ++ Sbjct: 69 EVHGITDEFLRDKPEYKDVHDEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGSVVKT 126 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 127 TDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235 + + F T E S +R + +EL H + + K+ Sbjct: 187 QTSLQFSAATQNSGELGAESLKR---SRSERKALKVLHASADELQAHQDRLDLVAKSGTC 243 Query: 236 IWD 238 +W Sbjct: 244 LWR 246 >gi|262404569|ref|ZP_06081124.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] gi|262349601|gb|EEY98739.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586] Length = 247 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 92/243 (37%), Positives = 138/243 (56%), Gaps = 17/243 (6%) Query: 7 MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ EA+ Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAI 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117 ++HGITDEFL+DKP + + EF DF + AE +AHNA FDVGF++ E ++ Sbjct: 69 EVHGITDEFLRDKPEYKQVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGSVIKT 126 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 127 TDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235 + + F T E + +R + +EL H + + + K+ Sbjct: 187 QTSLQFSASTQNSGELNAESLKR---ARSERKALKVLHASADELQAHQERLDLVAKSGTC 243 Query: 236 IWD 238 +W Sbjct: 244 LWR 246 >gi|304392717|ref|ZP_07374657.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130] gi|303295347|gb|EFL89707.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130] Length = 249 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 99/240 (41%), Positives = 150/240 (62%), Gaps = 8/240 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M I+FD ETTGL +K DR+IEIGAVE+ D T RTF ++ P R+ P+AL++HGI Sbjct: 1 MHAIIFDTETTGLSAKDGDRVIEIGAVEMKDLIPTGRTFHQYIHPGDREIHPDALRVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E L D+P F ++ F DF +A +AHNA FD+GF+NAE R+N P DP ++D Sbjct: 61 TMERLADEPRFEAVGQSFIDFCG--DAMLVAHNAPFDIGFLNAEYARMNLPPCDPELVLD 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ AR+K P +R L+ LC R+ I+ ++R HGALLD+ LL++V+I++M GG+Q+ GF Sbjct: 119 TVQAARKKFPGARVSLDMLCDRFNISRANRVLHGALLDARLLAEVFIELM-GGAQVKMGF 177 Query: 186 ----KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 +T+ R ++ + +R + +T EE + H+ +GK A+W++Y+ Sbjct: 178 DDEAETDAQRADPRNRRQTQHPPQPQRPSAMVYELTPEERERHNAMRAKIGKGALWNQYL 237 >gi|330445182|ref|ZP_08308834.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489373|dbj|GAA03331.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 241 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 97/247 (39%), Positives = 141/247 (57%), Gaps = 17/247 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IVFD ETTG++ + RIIEIGAVE+++ T TF V++ P+ R Sbjct: 1 MKATNQRIIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPD-RPID 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114 PEA+ +HGITDEFL KPS++ I EF DF + AE +AHNA FD+GF++ E Q + Sbjct: 60 PEAIDVHGITDEFLVGKPSYAEIHQEFIDFID--GAELVAHNASFDIGFMDYEFQLMGSD 117 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 K D ++ DTL +A+R P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G + + + D + K + +R +EL H++ + +GK Sbjct: 178 MTGGQTSLKLSSDSEGDSDTEFAIKRLTG----ERKGLKVILAAADELTAHEERLDLIGK 233 Query: 234 NA--IWD 238 A +W Sbjct: 234 KADVLWR 240 >gi|237807686|ref|YP_002892126.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187] gi|237499947|gb|ACQ92540.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187] Length = 249 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 88/250 (35%), Positives = 139/250 (55%), Gaps = 17/250 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M R ++ D ETTG++ RIIEIG VE+++ T + V++ P+ R Sbjct: 1 MNPMQTNRYVILDTETTGMNQSGGPVYIGHRIIEIGCVEVINRRLTGNHYHVYIKPD-RL 59 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 EA+++HGITD FL DKP F++I EF DF + AE + HNA FDVGFI+ E ++ Sbjct: 60 VDEEAIRVHGITDAFLADKPPFAAIAQEFRDFI--RGAELVIHNASFDVGFIDHEFNKLG 117 Query: 115 KDP--LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D R+ D+L++AR + P RN L++LC R+GI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 WTERVKDICRVTDSLALARGQFPGKRNSLDALCTRFGIDNSHRTLHGALLDAEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTL 231 M G +++ N++ + + +++R+ L + +EL H+K + + Sbjct: 178 LMTGGQTRLELHNTVNDNNSASSA--SAQQLKMIQRNGSLKVLSASADELAAHEKRLDLV 235 Query: 232 GKN---AIWD 238 K +W Sbjct: 236 AKKGGCCLWR 245 >gi|153825368|ref|ZP_01978035.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2] gi|183179467|ref|ZP_02957678.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3] gi|229524236|ref|ZP_04413641.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] gi|229528763|ref|ZP_04418153.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] gi|254225776|ref|ZP_04919381.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51] gi|254286458|ref|ZP_04961415.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226] gi|262192140|ref|ZP_06050301.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] gi|297580875|ref|ZP_06942800.1| DNA polymerase III [Vibrio cholerae RC385] gi|125621682|gb|EAZ50011.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51] gi|149741052|gb|EDM55121.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2] gi|150423407|gb|EDN15351.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226] gi|183012878|gb|EDT88178.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3] gi|229332537|gb|EEN98023.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)] gi|229337817|gb|EEO02834.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis VL426] gi|262031989|gb|EEY50566.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93] gi|297534701|gb|EFH73537.1| DNA polymerase III [Vibrio cholerae RC385] gi|327484751|gb|AEA79158.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4] Length = 247 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 93/243 (38%), Positives = 136/243 (55%), Gaps = 17/243 (6%) Query: 7 MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA+ Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAI 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117 ++HGITDEFLKDKP + + EF DF + AE +AHNA FDVGF++ E ++ Sbjct: 69 EVHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKT 126 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 127 SDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235 + + F T E + +R + +EL H + + K+ Sbjct: 187 QTSLQFSSATQNSGELSAESLKR---ARSERKALKVLAASADELQAHQDRLDIVAKSGTC 243 Query: 236 IWD 238 +W Sbjct: 244 LWR 246 >gi|229513876|ref|ZP_04403338.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] gi|229349057|gb|EEO14014.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21] Length = 247 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 93/243 (38%), Positives = 136/243 (55%), Gaps = 17/243 (6%) Query: 7 MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA+ Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAI 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117 ++HGITDEFLKDKP + + EF DF + AE +AHNA FDVGF++ E ++ Sbjct: 69 EVHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKT 126 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 127 SDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235 + + F T E + +R + +EL H + + K+ Sbjct: 187 QTSLQFSSVTQNSGELSAESLKR---ARSERKALKVLAASADELQAHQDRLDIVAKSGTC 243 Query: 236 IWD 238 +W Sbjct: 244 LWR 246 >gi|258627375|ref|ZP_05722159.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603] gi|258580413|gb|EEW05378.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603] Length = 247 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 93/243 (38%), Positives = 138/243 (56%), Gaps = 17/243 (6%) Query: 7 MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ EA+ Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAI 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117 ++HGITDEFL+DKP + + EF DF ++AE +AHNA FDVGF++ E ++ Sbjct: 69 EVHGITDEFLRDKPEYKDVHDEFLDFI--KDAELVAHNAPFDVGFMDYEFAKLGGSVVKT 126 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 127 TDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235 + + F T E S +R + +EL H + + K+ Sbjct: 187 QTSLQFSAATQNSGELGAESLKR---SRSERKALKVLHASADELQAHQDRLDLVAKSGTC 243 Query: 236 IWD 238 +W Sbjct: 244 LWR 246 >gi|323498002|ref|ZP_08103011.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] gi|323317047|gb|EGA70049.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326] Length = 247 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 19/244 (7%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ PEA+ Sbjct: 11 RIIVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RQIQPEAVL 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITDEFL DKP + + EF +F + AE +AHNA FD GF++ E + +N Sbjct: 70 VHGITDEFLVDKPEYQDVHQEFLEFI--KGAELVAHNAPFDTGFMDYEFEMLNAQIGKTE 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NA 235 + + F ++ D E K V + R R + +EL+ H + + K + Sbjct: 188 TSLQFNPGASDSDAVGGESIKRVAS----GRKALKVIRASADELEAHQSRLDIVEKSGSC 243 Query: 236 IWDR 239 +W + Sbjct: 244 LWRQ 247 >gi|254508645|ref|ZP_05120760.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16] gi|219548402|gb|EED25412.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16] Length = 247 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 141/248 (56%), Gaps = 21/248 (8%) Query: 5 NKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 N+ R +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R E Sbjct: 8 NQHRIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQAE 66 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---K 115 A+++HGITDEFL DKP + + +EF +F + AE +AHNA FD GF++ E + ++ Sbjct: 67 AVQVHGITDEFLVDKPEYQDVHAEFLEFI--KGAELVAHNAPFDTGFMDYEFEMLDPSIG 124 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 125 KTDDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMT 184 Query: 176 VGGSQINF--GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 G + + F G D + K+ R R + +EL+ H + + K Sbjct: 185 GGQTSLQFNAGNSDGSDVGGESIKRVASG-----RKALKVIRASADELEAHQNRLDIVEK 239 Query: 234 --NAIWDR 239 + +W + Sbjct: 240 SGSCLWRQ 247 >gi|239993463|ref|ZP_04713987.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC 27126] Length = 239 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 139/240 (57%), Gaps = 16/240 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D K RIIEIG VE+++ T F V++ P GR EA+++HGI Sbjct: 1 MRQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINP-GRHIEQEAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPS 121 T+EFL DKP+FS + EF F + A+ + HNA FDVGF++ E Sbjct: 60 TNEFLADKPTFSQVAQEFVSFI--KGAQLVIHNAPFDVGFMDHEFGMEASTKGVITNQIC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL++AR+ HP +N+L++LCKRYGI SHR+ HGALLD+ +L+DVY+ M G +++ Sbjct: 118 DVLDTLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238 + D ++ + + LK + T +E+ +H+ + + G +W Sbjct: 178 KLASSSGSDADSTAIRRVKRSANKLK-----VIKATADEITQHEARLDIVEKAGGKCLWR 232 >gi|325527245|gb|EGD04625.1| DNA polymerase III subunit epsilon [Burkholderia sp. TJI49] Length = 243 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 134/240 (55%), Gaps = 13/240 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + + DF + AE I HNA FD+GF++AE R+ P + Sbjct: 60 TTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 +D +SL D P+ + +EL H + L K+ +W + Sbjct: 176 VIDMLDDEAADGGAGGGQRVSLASLDLPVLA-ASDDELAAHQTQLDELDKSVKGTCVWRQ 234 >gi|304311305|ref|YP_003810903.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1] gi|301797038|emb|CBL45251.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1] Length = 246 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 144/246 (58%), Gaps = 12/246 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+IV D ETTGL+ + RIIEIG VEL+D T R + ++ P R A+ +HGI Sbjct: 4 LRQIVLDTETTGLEPAEGHRIIEIGCVELVDRRHTGRHYHQYINPE-RLVDAGAMAVHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T+EFL DKP F+ I F++F N AE + HNA FDVGFIN E + + + + Sbjct: 63 TNEFLADKPKFAEIADAFFEFIN--GAELVIHNAAFDVGFINHEFNLLKRFGTVGEHCSV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR+KHP +N+L++LC+RY I S R HGALLD+ +L+DVY+ M G + ++F Sbjct: 121 LDTLLMARKKHPGQKNNLDALCRRYEIDNSQRELHGALLDAQILADVYLAMTGGQTALSF 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 +E + TV S + R ++ E++ H++ +Q L K N ++ + Sbjct: 181 S-SGDEGQSGAASVATVQRFSDNRAP-LKVIRASQAEIEAHEQYVQLLDKRSSGNTVYRK 238 Query: 240 YISSNQ 245 Y S++ Sbjct: 239 YSPSSE 244 >gi|229522180|ref|ZP_04411597.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] gi|229341105|gb|EEO06110.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80] Length = 247 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 93/243 (38%), Positives = 137/243 (56%), Gaps = 17/243 (6%) Query: 7 MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA+ Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAI 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117 ++HGITDEFLKDKP + + EF DF + AE +AHNA FDVGF++ E ++ Sbjct: 69 EVHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKT 126 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 127 SDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235 + + F T E + +R + +EL H ++ + K+ Sbjct: 187 QTSLQFSSVTQNSGELSAESLKR---ARSERKALKVLAASADELQAHQDRLEIVAKSGTC 243 Query: 236 IWD 238 +W Sbjct: 244 LWR 246 >gi|269140166|ref|YP_003296867.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202] gi|267985827|gb|ACY85656.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202] gi|304559999|gb|ADM42663.1| DNA polymerase III epsilon subunit [Edwardsiella tarda FL6-60] Length = 243 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 90/242 (37%), Positives = 136/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFTV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+D+FL DKPSF+ + EF F + AE + HNA FD+GF++ E ++ +D Sbjct: 66 HGISDDFLLDKPSFAEVADEFLAFI--RGAELVIHNAPFDIGFMDYEFAKLGRDLPKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMTGG-- 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 Q + F ++ D + + + + + ++ EL H++ + Q G + + Sbjct: 182 QTSLAFSSDGDGTSQSQASEIRRV-VRGAKGLRVVYASEAELAAHEQRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|32035046|ref|ZP_00135112.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208748|ref|YP_001053973.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae L20] gi|126097540|gb|ABN74368.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 257 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 90/251 (35%), Positives = 140/251 (55%), Gaps = 16/251 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + Sbjct: 60 DEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLGN 117 Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 MM GG G + + I+ + + +++EE H++ ++ + Sbjct: 178 -MMTGGQLALLGEEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236 Query: 233 K----NAIWDR 239 K N IW R Sbjct: 237 KKSKGNCIWMR 247 >gi|86146863|ref|ZP_01065182.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] gi|85835315|gb|EAQ53454.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222] Length = 255 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 90/243 (37%), Positives = 139/243 (57%), Gaps = 20/243 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++++ RI+EIGAVE+++ T R F V++ P+ R EA+ Sbjct: 22 RIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRRLTGRHFHVYIKPD-RAIQEEAIG 80 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITDEFL DKP + I EF DF + AE +AHNA FD GF++ E +++N Sbjct: 81 VHGITDEFLIDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLNPAIGKTD 138 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 139 DYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 198 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236 + + F + +E + + R R T +E++ H + + K + + Sbjct: 199 TSLQF------NAGQQEGEGESIRRAESGRKSLKVLRATADEVEAHQSRLDLVEKSGSCL 252 Query: 237 WDR 239 W + Sbjct: 253 WRQ 255 >gi|261211353|ref|ZP_05925641.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] gi|260839308|gb|EEX65934.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341] Length = 247 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 91/243 (37%), Positives = 138/243 (56%), Gaps = 17/243 (6%) Query: 7 MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ EA+ Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQLEAI 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDP 117 ++HGITDEFL+DKP + + +EF DF + AE +AHNA FDVGF++ E ++ Sbjct: 69 EVHGITDEFLRDKPEYKEVHAEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGSSIGKT 126 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 127 TDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235 + + F + + E + R +EL H + + + K+ Sbjct: 187 QTSLQF---SASSQNSGELGAESLKRARSGRKALKVLHANADELQAHQERLDLVAKSGTC 243 Query: 236 IWD 238 +W Sbjct: 244 LWR 246 >gi|15642231|ref|NP_231864.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586228|ref|ZP_01676018.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80] gi|121726541|ref|ZP_01679790.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52] gi|147674786|ref|YP_001217749.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395] gi|153213799|ref|ZP_01949007.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587] gi|153817083|ref|ZP_01969750.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457] gi|153820811|ref|ZP_01973478.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33] gi|227082357|ref|YP_002810908.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|229507692|ref|ZP_04397197.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229512113|ref|ZP_04401592.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229519248|ref|ZP_04408691.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229607196|ref|YP_002877844.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236] gi|254849364|ref|ZP_05238714.1| DNA polymerase III [Vibrio cholerae MO10] gi|255747069|ref|ZP_05421014.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] gi|262161386|ref|ZP_06030496.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] gi|262167744|ref|ZP_06035446.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|298500392|ref|ZP_07010197.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757] gi|9656792|gb|AAF95377.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549494|gb|EAX59520.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80] gi|121630994|gb|EAX63373.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52] gi|124115723|gb|EAY34543.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587] gi|126512351|gb|EAZ74945.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457] gi|126521603|gb|EAZ78826.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33] gi|146316669|gb|ABQ21208.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|227010245|gb|ACP06457.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2] gi|227014129|gb|ACP10339.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395] gi|229343937|gb|EEO08912.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9] gi|229352078|gb|EEO17019.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33] gi|229355197|gb|EEO20118.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286] gi|229369851|gb|ACQ60274.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236] gi|254845069|gb|EET23483.1| DNA polymerase III [Vibrio cholerae MO10] gi|255735471|gb|EET90871.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101] gi|262023809|gb|EEY42508.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27] gi|262028697|gb|EEY47351.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1] gi|297541085|gb|EFH77139.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757] Length = 247 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 93/243 (38%), Positives = 136/243 (55%), Gaps = 17/243 (6%) Query: 7 MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA+ Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAI 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117 ++HGITDEFLKDKP + + EF DF + AE +AHNA FDVGF++ E ++ Sbjct: 69 EVHGITDEFLKDKPEYKDVHEEFVDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKT 126 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 127 SDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235 + + F T E + +R + +EL H + + K+ Sbjct: 187 QTSLQFSSVTQNSGELSAESLKR---ARSERKALKVLAASADELQAHQDRLDIVAKSGTC 243 Query: 236 IWD 238 +W Sbjct: 244 LWR 246 >gi|209695823|ref|YP_002263753.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238] gi|208009776|emb|CAQ80082.1| DNA polymerase III, epsilon chain [Aliivibrio salmonicida LFI1238] Length = 243 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 96/240 (40%), Positives = 137/240 (57%), Gaps = 16/240 (6%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++ + RIIEIGAVE+++ T F V++ P+ R EA+ Sbjct: 10 RIIVLDTETTGMNLSGGPIYEGHRIIEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAID 68 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPL 118 +HGITDEFL KP + I EF F + AE +AHNA FDVGF++ E ++NK Sbjct: 69 VHGITDEFLYGKPEYKDIHDEFLAFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIGTTD 126 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +I DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 127 QYCKITDTLAMAKKISPGKRNNLDVLCGRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 186 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + ++F NE +E + L R R T +EL+ H+K + +G +W Sbjct: 187 TSLSFSAGGNESDSSEESINRL----NLGRKGLKVLRATADELEAHEKRLDIVGDACLWR 242 >gi|167587486|ref|ZP_02379874.1| DNA polymerase III subunit epsilon [Burkholderia ubonensis Bu] Length = 242 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 13/246 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + + DF + AE I HNA FD+GF++AE R++ P + + Sbjct: 60 TTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 +D +SL D P+ + +EL H + L K+ +W R Sbjct: 176 VIDMLDDDAADGGAANGQRVSLASLDLPVLA-ASDDELAAHQAQLDGLDKSVKGTCVWRR 234 Query: 240 YISSNQ 245 ++ Sbjct: 235 TPAAGD 240 >gi|89075025|ref|ZP_01161470.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34] gi|89049264|gb|EAR54828.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34] Length = 241 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 98/247 (39%), Positives = 145/247 (58%), Gaps = 17/247 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IVFD ETTG++ + RI+EIGAVE+++ T +TF V++ P+ R Sbjct: 1 MKATNQRIIVFDTETTGMNMTGPHYEGHRIVEIGAVEIINRKLTGKTFHVYIKPD-RPID 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114 PEA+ +HGITDEFL KPS++ I EF DF + AE +AHNA FD+GF++ E Q + Sbjct: 60 PEAIDVHGITDEFLIGKPSYADIHQEFIDFID--GAELVAHNASFDIGFMDYEFQLMGSD 117 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 K D ++ DTL +A+R P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G + + K + D EK+ + +R + +EL H++ + +GK Sbjct: 178 MTGGQTSL----KLSGDNEGDSEKEFAIKRLVGERKGLKVICASADELVSHEERLDLIGK 233 Query: 234 NA--IWD 238 A +W Sbjct: 234 KADVLWR 240 >gi|89052685|ref|YP_508136.1| DNA polymerase III, epsilon subunit [Jannaschia sp. CCS1] gi|88862234|gb|ABD53111.1| DNA polymerase III epsilon subunit [Jannaschia sp. CCS1] Length = 231 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 92/237 (38%), Positives = 137/237 (57%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDSK---NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 MR+IV D ETTGL+ RI+EIGAVE+ + T +T+ ++ P R EA +H Sbjct: 1 MREIVLDTETTGLNPYDMPRHRIVEIGAVEIFNQVPTGKTYHQYIQPE-RDMPKEAFDVH 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI ++FL DKP F+ I +F DF + HNA+FD+ F+NAEL+ K L + Sbjct: 60 GIGEDFLADKPIFADIAQDFLDFVGGDQ--MVIHNAEFDMRFLNAELEWAGKHALPNDQA 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL IAR+K P S L++LC+R+GI S R KHGALLDS +L++VY+++ GG Q +F Sbjct: 118 LDTLKIARQKFPGSPASLDALCRRFGIDNSAREKHGALLDSEILAEVYLELT-GGKQPDF 176 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 G ++ +++ + N R L TR++ E H + LG +W ++ Sbjct: 177 GLSQSKSTPTQQQDE---NWRPRPRPSALPTRLSDVEKAAHAAFVDALGDQTVWSKF 230 >gi|90021666|ref|YP_527493.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40] gi|89951266|gb|ABD81281.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40] Length = 238 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 94/241 (39%), Positives = 138/241 (57%), Gaps = 13/241 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VEL++ T R + ++ P R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPE-REIDEGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122 T+EFL DKP F I EF F + AE + HNA FDVGF+N E + + D Sbjct: 60 TNEFLADKPVFKDIADEFMAFVD--GAELVIHNAPFDVGFLNHEFNLLGRGSTVINDRCS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL++AR KHP +N+L++LCKRYG S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 ILDTLALARNKHPGQKNNLDALCKRYGADNSARDLHGALLDAEILADVYLLMTGGQTNLA 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 G + + + +S ++ P+ R + EEL H+K + + G +W Sbjct: 178 LG-GAGSSSGMDDGGEELVRVSADRKPLPII-RASAEELALHEKKLAEIDKASGGECLWL 235 Query: 239 R 239 + Sbjct: 236 K 236 >gi|260767799|ref|ZP_05876734.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] gi|260617308|gb|EEX42492.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972] Length = 246 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 92/243 (37%), Positives = 137/243 (56%), Gaps = 18/243 (7%) Query: 8 RKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA++ Sbjct: 11 RIVVLDTETTGMNLEGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RAIQDEAIE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP- 120 +HGITDEFL DKP + + EF DF + AE +AHNA FDVGF++ E +++ Sbjct: 70 VHGITDEFLVDKPEYKDVHEEFLDFI--RGAELVAHNAPFDVGFMDYEFSKLSIPTAKTD 127 Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 ELCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 + + F + E+ K V R R T +E+ H + + K+ + Sbjct: 188 TSLQFSGSSQENGMGAGAIKRVAE----GRKALKVLRATADEIQAHQDRLDIVEKSGTCL 243 Query: 237 WDR 239 W + Sbjct: 244 WRQ 246 >gi|330816255|ref|YP_004359960.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] gi|327368648|gb|AEA60004.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] Length = 240 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 13/240 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VE+L+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRIIEIGCVEMLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123 T EFL DKP F+ + DF + AE I HNA FD+GFI+AE +R+ PL+ Sbjct: 60 TTEFLSDKPKFAEVAHAICDFV--RGAELIIHNAPFDIGFIDAEFERVGLPPLNQHCDGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 D + +SL P+ +++EL H + L K+ +W + Sbjct: 176 VIDMLGDGDDEGGASGAARVSLATLALPVLA-ASEDELAAHLAQLDDLDKSVKGACVWRK 234 >gi|148251776|ref|YP_001236361.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. BTAi1] gi|146403949|gb|ABQ32455.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. BTAi1] Length = 232 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 99/239 (41%), Positives = 140/239 (58%), Gaps = 10/239 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD+ + DR++EIG VE+++ T + F ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F I EF +F +A + HNA FD+GFINAEL R+ + + R++D Sbjct: 60 SSEFLADKPLFHEIVEEFLEFIG--DAPLVIHNASFDIGFINAELDRVKRAAIPRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFG 184 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VY+ ++ SQ+ Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQLILT 177 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 T E R + +R+ PL R+T E + H I TLG IW +++ Sbjct: 178 QDTQEIRVGAAG-----DTPRRQRETPLAARVTDAEREAHRAFIATLGDKPIWMEFLAG 231 >gi|268592015|ref|ZP_06126236.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131] gi|291312407|gb|EFE52860.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131] Length = 247 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 140/246 (56%), Gaps = 22/246 (8%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P+ R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL+DKP F+ I EF +F + AE + HNA FD+GF++ E +++NK Sbjct: 66 HGISDEFLQDKPVFAEIADEFLEFI--RGAELVIHNAPFDIGFMDYEFRKLNKGIPPTQD 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCTITDSLVLARKLFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKN--- 234 ++F + +E + I ++R + + EEL H+ + + K Sbjct: 184 SLSFSMDSESANNEQEYE-----IQRIERPQTGLRVIFASDEELIAHEARLDIVDKKGGK 238 Query: 235 -AIWDR 239 +W + Sbjct: 239 PCLWRQ 244 >gi|192359256|ref|YP_001982513.1| DNA polymerase III subunit epsilon [Cellvibrio japonicus Ueda107] gi|190685421|gb|ACE83099.1| DNA polymerase III, epsilon subunit [Cellvibrio japonicus Ueda107] Length = 237 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 92/243 (37%), Positives = 135/243 (55%), Gaps = 17/243 (6%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ RIIEIG VEL++ T R + ++ P R+ A +HGI Sbjct: 1 MRQIVLDTETTGLEYSQGHRIIEIGCVELMNRRLTGRHYHQYINPE-REVDAGAFAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPLDPSR 122 ++ L DKP F+ I +F +F +AE I HNA FD+GFI+ EL + Sbjct: 60 SNAMLNDKPVFARIVDDFLNFVG--DAELIIHNAAFDIGFIDHELNMLRPGFGSIKGRCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL +AR KHP +N+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + ++ Sbjct: 118 VIDTLLLARNKHPGQKNNLDALCKRYGVDNSQRDLHGALLDAEILADVYLAMTGGQTSLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLL--KRDKPLFTRITKEELDEHDKTIQTL----GKNAI 236 G ++ E I L +R + EEL H++ + + G N + Sbjct: 178 LG----GNQAKAEGGGNQEGIRRLSSQRPALRVISASAEELQAHEEKLAAIARSSGDNCL 233 Query: 237 WDR 239 W + Sbjct: 234 WLK 236 >gi|126724532|ref|ZP_01740375.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Rhodobacterales bacterium HTCC2150] gi|126705696|gb|EBA04786.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Rhodobacterales bacterium HTCC2150] Length = 230 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 90/234 (38%), Positives = 134/234 (57%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG D DRI+EIGAVEL ++ T +T+ ++ P R EA ++HG+ Sbjct: 1 MRELVLDTETTGFDPFSGDRIVEIGAVELFNHMPTGKTYHQYINPQ-RAMPAEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL +P F+ I F DF + HNA FD+ F+NAEL + + L + +D Sbjct: 60 GDEFLARQPVFADIAQAFVDFVGTD--LLVIHNASFDMKFLNAELDWLGRAKLPMEQSLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR+K P S L++LC+R+G+ R KHGALLDS +L++VY++++ GG Q +FG Sbjct: 118 TLAIARKKFPGSPASLDALCRRFGVNNDAREKHGALLDSEILAEVYLELI-GGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 T + R PL RI++EE H + ++ L +W + Sbjct: 177 NTAAAASSGTDAG-FSEWRAQPRPNPLAPRISEEEAKAHREFVEKLADGGLWPK 229 >gi|167562346|ref|ZP_02355262.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis EO147] gi|167574356|ref|ZP_02367230.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis C6786] Length = 240 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 137/245 (55%), Gaps = 13/245 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P GR + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRVIEIGCVELLNRRLTGNNLHFYVNP-GRDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ I E DF ++AE I HNA FD+GF++AE + + + Sbjct: 60 TTEFLSDKPKFAEIVDELRDFV--RDAELIIHNAPFDLGFLDAEFSLLGLPTFTDHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 ++ P ++ D P+ T +EL H+ + L K+ +W + Sbjct: 176 VIDMLDEGGDAHRNGDAPRMAFSGLDLPVLA-ATDDELAAHEAQLDALDKSVKGACVWRK 234 Query: 240 YISSN 244 S Sbjct: 235 EAGSE 239 >gi|254252714|ref|ZP_04946032.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158] gi|124895323|gb|EAY69203.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158] Length = 244 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 133/239 (55%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + + +F + AE I HNA FD+GF++AE + P + + Sbjct: 60 TTEFLSDKPKFAEVADQIREFV--RGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 +D +SL D P+ + EEL H + L K+ +W Sbjct: 176 VIDMLDDAATVGGAANGQRVSLAALDLPVLA-ASDEELAAHHAQLDELDKSVKGTCVWR 233 >gi|56698700|ref|YP_169077.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3] gi|56680437|gb|AAV97103.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3] Length = 241 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 139/247 (56%), Gaps = 21/247 (8%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL ++ T T+ ++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPETGDRIVEIGAVELWNHIATGNTYHQYINPE-RMMPAEAFGVHGI 59 Query: 66 TDE-------------FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L+DKP F+ + F DF ++ + HNA FD+ F+NAEL+ Sbjct: 60 GPDILEPPQQPEPGQVTLRDKPVFAKVGQAFRDFVA--DSHLVIHNASFDMKFLNAELRW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + R IDTL +ARRK P S L++LC+R+GI S+R HGALLD+ +L++VY+ Sbjct: 118 MGLPEIPFDRAIDTLGMARRKFPGSPATLDALCRRFGIDNSNRVLHGALLDAEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ GG Q +FG T + + R PL RIT+ E H + ++ LG Sbjct: 178 ELI-GGKQPDFGLSTV---TTGDGPGQETAWRAMPRPTPLPARITEAERTAHAEFVEKLG 233 Query: 233 KNAIWDR 239 +NA+W R Sbjct: 234 ENAVWKR 240 >gi|119944269|ref|YP_941949.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] gi|119862873|gb|ABM02350.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] Length = 239 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 93/250 (37%), Positives = 138/250 (55%), Gaps = 22/250 (8%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG++ RIIEIG VE+++ T R F V++ P+ R+ Sbjct: 1 MNTEKMIRQVVLDTETTGMNKGGTIYVGHRIIEIGCVEVINRRLTGRHFHVYVKPD-REI 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA+ +HGITDEFL DKP+FS I EF +F + AE + HNA FDVGF++ E + +NK Sbjct: 60 DPEAIAVHGITDEFLHDKPAFSDIADEFIEFI--KGAELVIHNAPFDVGFMDQEFRFLNK 117 Query: 116 DPLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S I DTL +AR+ +P R L++LC+ GI HR HGALLD+ +L+DVY+ Sbjct: 118 RTKPTAEISTITDTLVMARKMYPGKRASLDALCRELGIDNKHRVLHGALLDAEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTL 231 M G ++N D + + K PL +++E H+K + + Sbjct: 178 LMTGGQKKLNLSSSGQNDTNTGK--------RVRKTQSPLTIISASEDEQQAHEKRLDLI 229 Query: 232 GK--NAIWDR 239 K + +W Sbjct: 230 EKSASCLWRE 239 >gi|317490808|ref|ZP_07949244.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920355|gb|EFV41678.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] Length = 244 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 97/244 (39%), Positives = 144/244 (59%), Gaps = 21/244 (8%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+D+FL DKP+F+ I EF +F + AE + HNA FD+GF++ E +++N+D Sbjct: 66 HGISDDFLLDKPTFADIADEFLEFI--RGAELVIHNAPFDIGFMDYEFRKLNRDIPKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +ARR P RN L++LC RY I + R+ HGALLDS +L+DVY+ M G + Sbjct: 124 FCKITDSLVMARRLFPGKRNSLDALCNRYEIDNTKRTLHGALLDSQILADVYLTMTGGQT 183 Query: 180 QINFGFKTNED--RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD---KTIQTLGKN 234 + F ++ + R E +K V + LK R + EEL EH+ +Q G + Sbjct: 184 SLTFSMESEGEKPRPTGEVQKIVRKMQALK-----VVRASAEELAEHEHRLDLVQKKGGS 238 Query: 235 AIWD 238 +W Sbjct: 239 CLWR 242 >gi|90416118|ref|ZP_01224051.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] gi|90332492|gb|EAS47689.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] Length = 239 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 95/239 (39%), Positives = 144/239 (60%), Gaps = 11/239 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S++ RIIEIG VEL+ T R + ++ P RK A+++HGI Sbjct: 1 MRQIVLDTETTGLETSQDHRIIEIGCVELVGRKLTGRHYHQYVNPQ-RKVDVGAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 TD+FL+DKP F ++ EF +F + A+ + HNA FDVGFIN E+ ++N R Sbjct: 60 TDQFLEDKPLFETVAREFLEFVD--GADLVIHNAPFDVGFINHEIAKLNGAYQAIESGCR 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IIDTL++AR+KHP +N+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G +N Sbjct: 118 IIDTLALARQKHPGQKNNLDALCKRYGVDNSQRDLHGALLDAEILADVYLLMTGGQVNLN 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIWD 238 + D + + ++ R ++EE++ H + ++ + K N +W Sbjct: 178 ISGQQASDGGQDNSRSGIRRLAQ-DRQPLRVVTASREEIERHQQKLEAINKSSGNCLWM 235 >gi|86136750|ref|ZP_01055328.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193] gi|85826074|gb|EAQ46271.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193] Length = 243 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 144/247 (58%), Gaps = 21/247 (8%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVELL++ T TF V++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELLNHMPTGETFHVYINPE-RSMPQEAFGVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F+ F DF +++ + HNA FD+ F+N EL R Sbjct: 60 GPDLLEPPQKPEKGQVTLRDKPVFAKFGQAFLDFV--RDSRMVIHNASFDMKFLNFELDR 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L + +DTL++AR++ P S L++LC+R+ I S+R+ HGALLDS +L+DVY+ Sbjct: 118 MGLRTLPMEQALDTLAMARKRFPGSPATLDALCRRFQIDNSNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 ++ GG Q +FG TN + V + R PL +R+T +E + H+ ++ +G Sbjct: 178 EL-SGGRQPDFGLSTN---ATAGGGQVVEDWRPAPRHTPLPSRLTAKEAEAHEAFVEKMG 233 Query: 233 KNAIWDR 239 ++A+W++ Sbjct: 234 EDALWNQ 240 >gi|84389766|ref|ZP_00991318.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] gi|84376867|gb|EAP93741.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01] Length = 255 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 92/243 (37%), Positives = 139/243 (57%), Gaps = 20/243 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++++ RI+EIGAVE+++ T R F V++ P+ R EA+ Sbjct: 22 RIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRRLTGRHFHVYIKPD-RAIQEEAIG 80 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITDEFL DKP + I EF DF + AE +AHNA FD GF++ E +++N Sbjct: 81 VHGITDEFLIDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLNSAIGKTD 138 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 139 DYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 198 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236 + + F + KE + + R R T +E++ H + + K + + Sbjct: 199 TSLQF------NAGQKEGEGESIRRAESGRKSLKVLRATADEVEAHQSRLDLVEKSGSCL 252 Query: 237 WDR 239 W + Sbjct: 253 WRQ 255 >gi|161525206|ref|YP_001580218.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC 17616] gi|189350055|ref|YP_001945683.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC 17616] gi|160342635|gb|ABX15721.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC 17616] gi|189334077|dbj|BAG43147.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 244 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 96/240 (40%), Positives = 135/240 (56%), Gaps = 13/240 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARSGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ I + DF + AE I HNA FD+GF++AE + P + + Sbjct: 60 TTEFLSDKPKFAEIAHQILDFV--KGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 +D +SL D P+ T EEL EH + L K+ +W + Sbjct: 176 VIDMLDDDAGGAGAANGQRVSLAALDLPVLA-ATAEELAEHQAQLDDLDKSVKGACVWRQ 234 >gi|218710290|ref|YP_002417911.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32] gi|218323309|emb|CAV19486.1| DNA polymerase III, epsilon subunit [Vibrio splendidus LGP32] Length = 255 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 91/243 (37%), Positives = 139/243 (57%), Gaps = 20/243 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++++ RI+EIGAVE+++ T R F V++ P+ R EA+ Sbjct: 22 RIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYIKPD-RAIQEEAIG 80 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITDEFL DKP + I EF DF + AE +AHNA FD GF++ E +++N Sbjct: 81 VHGITDEFLIDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLNPAIGKTD 138 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 139 DYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 198 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236 + + F + +E + + R R T +E++ H + + K + + Sbjct: 199 TSLQF------NAGQQEGEGESIRRAESGRKSLKVLRATADEVEAHQSRLDLVEKSGSCL 252 Query: 237 WDR 239 W + Sbjct: 253 WRQ 255 >gi|254245771|ref|ZP_04939092.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|124870547|gb|EAY62263.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] Length = 305 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 91/241 (37%), Positives = 134/241 (55%), Gaps = 13/241 (5%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG Sbjct: 61 DMRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHG 119 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSR 122 +T EFL DKP F+ + + DF ++AE I HNA FD+GF++AE R+ P Sbjct: 120 LTTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGG 177 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 178 VIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDS 235 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 +D +SL D +++EL H + L K+ +W Sbjct: 236 LVIDMLDDAGADGSAANGKRVSLAALDL-AVVAASEDELAAHQAQLDELDKSVKGTCVWR 294 Query: 239 R 239 + Sbjct: 295 Q 295 >gi|323135821|ref|ZP_08070904.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242] gi|322398912|gb|EFY01431.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242] Length = 239 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 109/238 (45%), Positives = 148/238 (62%), Gaps = 10/238 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD K DR++EIGAVE+L+ T R F ++ P R EA ++HG+ Sbjct: 1 MREIVFDTETTGLDPSKGDRVVEIGAVEILNLIPTGRVFHAYIDPE-RDMPEEAFRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL F I EF DF +++ +AHNA+FDV FINAE +N PL P+RI+D Sbjct: 60 SREFLSQHRKFREIAEEFIDFI--EDSPMVAHNAEFDVRFINAEFSMLNFAPLAPARIVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARR HP S L++LC+RYGI +S R KHGALLD+ LL++VY ++M GG Q Sbjct: 118 TLAIARRLHPGSPASLDALCQRYGIDLSRRDKHGALLDAGLLAEVYAELM-GGRQAALSL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 +T ++ + L R PL R+T E + H + L K+AIWDRY++ Sbjct: 177 QTV-----SVSRRAQTSDLLRARPAPLEDRLTPAEDEAHRAFVAGLSKSAIWDRYLTG 229 >gi|221201955|ref|ZP_03574991.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] gi|221204915|ref|ZP_03577932.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] gi|221213892|ref|ZP_03586865.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] gi|221166069|gb|EED98542.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] gi|221175772|gb|EEE08202.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] gi|221178038|gb|EEE10449.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] Length = 244 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 96/240 (40%), Positives = 135/240 (56%), Gaps = 13/240 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRIIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ I + DF + AE I HNA FD+GF++AE + P + + Sbjct: 60 TTEFLSDKPKFAEIAHQILDFV--KGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 +D +SL D P+ T EEL EH + L K+ +W + Sbjct: 176 VIDMLDDDAGGAGAANGQRVSLAALDLPVLA-ATAEELAEHQAQLDDLDKSVKGACVWRQ 234 >gi|158421629|ref|YP_001522921.1| DNA polymerase III [Azorhizobium caulinodans ORS 571] gi|158328518|dbj|BAF86003.1| DNA polymerase III [Azorhizobium caulinodans ORS 571] Length = 240 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 94/236 (39%), Positives = 145/236 (61%), Gaps = 6/236 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ K DR++EIG VE+++ T TF V++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLEANKGDRVVEIGCVEMVNRILTGNTFHVYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + F +F + HNA FD+GF+NAEL R++++P+ R++D Sbjct: 60 SSEFLSDKPKFAEVADAFLEFIA--GDTLVIHNAAFDIGFLNAELARLSREPIARDRVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+++ARRKHP + L+ L KRYGI S R KHGALLDS LL++VY +++ G + G Sbjct: 118 TVALARRKHPGASAKLDDLMKRYGIDASRRVKHGALLDSELLAEVYSELLGGRQAMLVGL 177 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 ++ ++ R PL +R++ EE+ H + I +G+ IW++Y+ Sbjct: 178 --ADETSEAPRLVVEVAVAARARPVPLPSRLSAEEIAAHREFIGGMGEKGIWNQYL 231 >gi|254283824|ref|ZP_04958792.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B] gi|219680027|gb|EED36376.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B] Length = 244 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 134/247 (54%), Gaps = 11/247 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTGL+ + RIIEIG VEL++ T + ++ P R+ P A+++HGI Sbjct: 1 MRHVVLDTETTGLEVTQGHRIIEIGCVELVNRKLTGNHYHQYVQPQ-REIDPGAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 T +FL DKP+F + EF F + AE I HNA FDVGFI+AEL R+ D R Sbjct: 60 TPDFLADKPTFDRVADEFLAFID--GAELIIHNAPFDVGFIDAELDRLGARRTAVADHCR 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + D+L +ARRKHP RN L++LC+RYG+ S R+ HGALLD+ +L+DV++ M G + + Sbjct: 118 VTDSLVLARRKHPGQRNSLDALCQRYGVDNSTRTLHGALLDAEILADVFLLMTGGQTSLG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 + R R + EEL H++ + + G IW Sbjct: 178 LSDDEEGSLDTADNPDGGIRRLPTSRPPLRVMRASAEELARHEQRLDAIAAASGGPVIWR 237 Query: 239 RYISSNQ 245 S+ + Sbjct: 238 EQQSAAE 244 >gi|87119404|ref|ZP_01075302.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Marinomonas sp. MED121] gi|86165795|gb|EAQ67062.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Marinomonas sp. MED121] Length = 235 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 101/240 (42%), Positives = 143/240 (59%), Gaps = 16/240 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTG+D K RIIEIG VE+LD T F V++ P+ R+ EA ++HGI Sbjct: 2 MRQIILDTETTGIDPKQGHRIIEIGCVEMLDRKLTKNHFHVYINPD-RQVEEEAFQVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 +DEFL DKP F + +F ++ Q AE + HNA FDVGFI+ E ++ P D + Sbjct: 61 SDEFLADKPRFHQVAQDFLNYI--QGAELVIHNAPFDVGFIDHEFAKLGNFPKVADICSV 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL+ AR KHP +N+L++LCKRYGI SHR HGALLDS +L+DVY+ M G + + Sbjct: 119 FDTLAFARSKHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLLMTGGQTSLGL 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPL--FTRITKEELDEHDKTIQTLGKNA---IWD 238 G + + +VP I L D+P+ + + ELD H++ + + K A +W Sbjct: 179 GDDED-----GADGMSVPTIRRLSPDRPMIKVLKANQAELDLHNERLDLIEKQAGKVLWR 233 >gi|260913733|ref|ZP_05920209.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella dagmatis ATCC 43325] gi|260632272|gb|EEX50447.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella dagmatis ATCC 43325] Length = 253 Score = 241 bits (616), Expect = 7e-62, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 143/246 (58%), Gaps = 17/246 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T F +++ P+ R P+A+K+ Sbjct: 9 RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPD-RPVDPDAIKV 67 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDP 120 HGITDE L DKP+F+ I +F ++ Q AE + HNA FD+GF++ E ++ + + Sbjct: 68 HGITDEMLADKPTFNEIAQQFIEYI--QGAELLIHNASFDIGFMDYEFSKLNIGLNTSEI 125 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I DTL +AR+ +P RN L++LC R GI S R+ HGALLD+ +L+DVY+ M G Q Sbjct: 126 CLITDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGG--Q 183 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAI 236 + ++ + ++ V + + +D T++EL H + I+ L K N + Sbjct: 184 TSLFDESEPEIIVATTQEEVQSAVVFSQDLKKLM-PTEDELQAHIEYIKLLNKKSKGNCL 242 Query: 237 WDRYIS 242 W++ +S Sbjct: 243 WEKRLS 248 >gi|170697939|ref|ZP_02889022.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] gi|170137105|gb|EDT05350.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] Length = 244 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 91/239 (38%), Positives = 134/239 (56%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL+DKP F+ + + DF + AE I HNA FD+GF++AE R++ P + Sbjct: 60 TTEFLRDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 +D +SL P+ + +EL H + L K+ +W Sbjct: 176 VIDMLDDAGADGSAANGQRVSLASLVLPVLA-ASDDELAAHQTQLDELDKSVKGTCVWR 233 >gi|312795584|ref|YP_004028506.1| DNA polymerase III, epsilon chain [Burkholderia rhizoxinica HKI 454] gi|312167359|emb|CBW74362.1| DNA polymerase III, epsilon chain (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 247 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 133/240 (55%), Gaps = 14/240 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTGL++K DRIIEIG VE+++ T ++ P R + P AL +HG+ Sbjct: 1 MRLLVLDTETTGLNAKGGDRIIEIGCVEIVNRQLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL+DKP F+ I DF ++A+ I HNA FD+GF+NAE + P + Sbjct: 60 TTEFLRDKPKFAEIADALRDFV--KDADIIIHNAPFDIGFLNAEFAMLGLPPFCDHCGEV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A+ P RN L++LC+R+GI+ +HR+ HGALLD+ LL+DVY+ M G Q + Sbjct: 118 IDTLVQAKAMFPGKRNSLDALCERFGISNAHRTLHGALLDAELLADVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 D T +SL + + P+ + + +EL H + L K +W Sbjct: 176 VIDMLADTPGSGSVATT-RVSLAQFELPVIS-ASDDELAAHAGVLDELDKARKGPCVWRE 233 >gi|146337369|ref|YP_001202417.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. ORS278] gi|146190175|emb|CAL74167.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Bradyrhizobium sp. ORS278] Length = 232 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 95/238 (39%), Positives = 137/238 (57%), Gaps = 8/238 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD+ + DR++EIG VE+++ T + F ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPQ-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F + +F F +A + HNA FD+GFINAEL R+ + + R++D Sbjct: 60 STEFLSDKPLFHEVVEDFLAFIG--DAPLVIHNASFDIGFINAELDRVKRAAIPRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VY+ ++ G Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLV-GARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 + P +RD PL R+T+ E + H + TLG IW +++ Sbjct: 177 TQDAQEIRIGNAGDTPR---RQRDVPLAPRVTEAEREAHRAFVATLGDKPIWMDFLTG 231 >gi|220921281|ref|YP_002496582.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS 2060] gi|219945887|gb|ACL56279.1| DNA polymerase III, epsilon subunit [Methylobacterium nodulans ORS 2060] Length = 238 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 100/239 (41%), Positives = 150/239 (62%), Gaps = 10/239 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +R+IV D ETTG D+K DR+IEIG +ELL++ T R F ++ P R S A +HG++ Sbjct: 2 LREIVLDTETTGTDAKTDRLIEIGGIELLNHIPTGREFHRYINPQ-RAVSQGAFAVHGLS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSRI 123 D FL DKP F+ I +F DF +A ++ HNA FDVGF+NAE R+ + P++ S + Sbjct: 61 DAFLADKPLFAEILPDFLDFCG--DATFVIHNAAFDVGFLNAEYARLGETAPPPIELSAV 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL++ARRKHP++ N+L++LC RYGI S R+KHGALLD+ +L++VYI+++ GG Q + Sbjct: 119 VDTLALARRKHPNAANNLDALCARYGIDNSRRTKHGALLDAQILAEVYIELL-GGKQTSL 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G + ++ P + + + +R+T E H +LG NA+W YI Sbjct: 178 GLTLEAASIVRVTQEAGP---VAHGPRSVRSRLTDAERTAHAAFTASLGANAVWRDYIG 233 >gi|153829952|ref|ZP_01982619.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] gi|148874587|gb|EDL72722.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39] Length = 247 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 93/243 (38%), Positives = 139/243 (57%), Gaps = 17/243 (6%) Query: 7 MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA+ Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RDIQLEAI 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DP 117 ++HGITDEFLKDKP + + EF DF + AE +AHNA FDVGF++ E +++ Sbjct: 69 EVHGITDEFLKDKPEYKDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLSGAIGKT 126 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D ++ DTL++A+R P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 127 SDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGG 186 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--A 235 + + F T + E + + +R + +EL H + + K+ Sbjct: 187 QTSLQFSSAT---QNSGELSAELLKRARSERKALKVLAASADELQAHQDRLDIVAKSGTC 243 Query: 236 IWD 238 +W Sbjct: 244 LWR 246 >gi|307246199|ref|ZP_07528280.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255179|ref|ZP_07536997.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259617|ref|ZP_07541341.1| hypothetical protein appser11_14150 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852808|gb|EFM85032.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862052|gb|EFM94028.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866262|gb|EFM98126.1| hypothetical protein appser11_14150 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 257 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 90/251 (35%), Positives = 140/251 (55%), Gaps = 16/251 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + Sbjct: 60 EEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117 Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 MM GG G + + I+ + + +++EE H++ ++ + Sbjct: 178 -MMTGGQLALLGEEDATSNHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236 Query: 233 K----NAIWDR 239 K N IW R Sbjct: 237 KKSKGNCIWMR 247 >gi|254480788|ref|ZP_05094035.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2148] gi|214039371|gb|EEB80031.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2148] Length = 244 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 95/244 (38%), Positives = 140/244 (57%), Gaps = 12/244 (4%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ RIIEIG VEL T + ++ PN R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEVSQGHRIIEIGCVELDTRRLTGNHYHQYINPN-REIDQGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122 T+EFLKDKPSF +F EF +F + +E + HNA FD+GF+N+E+QR+ D D + Sbjct: 60 TNEFLKDKPSFERVFREFLEFV--EGSELVIHNAPFDLGFLNSEIQRLEPDAPRLEDRCK 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR KHP RN L++LC+RYG+ S R HGALLDS +L+DVY+ M G + + Sbjct: 118 IVDTLVMARGKHPGQRNSLDALCQRYGVDNSQRDLHGALLDSEILADVYLLMTGGQTALQ 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 + + + + ++ P + EEL H+ ++ + G +W Sbjct: 178 LSDNDSGAESGASRSERIIRLDAGRQALP-VIAASTEELAAHEAQLEAISSASGGKVLWK 236 Query: 239 RYIS 242 Sbjct: 237 EIPG 240 >gi|90581658|ref|ZP_01237447.1| DNA polymerase III subunit epsilon [Vibrio angustum S14] gi|90437142|gb|EAS62344.1| DNA polymerase III subunit epsilon [Vibrio angustum S14] Length = 241 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 96/247 (38%), Positives = 146/247 (59%), Gaps = 17/247 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IVFD ETTG++ + RIIEIGAVE+++ T +TF V++ P+ R Sbjct: 1 MKATNQRIIVFDTETTGMNMTGPHYEGHRIIEIGAVEIINRKLTGKTFHVYIKPD-RPID 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114 PEA+ +HGITDEFL KPS++ I EF DF + AE +AHNA FD+GF++ E Q + Sbjct: 60 PEAIDVHGITDEFLIGKPSYADIHQEFIDFID--GAELVAHNASFDIGFMDYEFQLMGSD 117 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 K D ++ DTL +A+R P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 LKKTEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLM 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G + + + +D E++ + + + +R + +EL H++ + +GK Sbjct: 178 MTGGQTSLKL---SGDDEGDSEKEFAIKRL-VSERKGLKVICASADELVSHEERLDLIGK 233 Query: 234 NA--IWD 238 +W Sbjct: 234 KTDVLWR 240 >gi|167836205|ref|ZP_02463088.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis MSMB43] Length = 241 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 138/246 (56%), Gaps = 13/246 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIE+G VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGSNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ I + DF ++AE I HNA FD+GF++AE + + + Sbjct: 60 TTEFLSDKPKFAEIVDQLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 ++ P ++ D P+ T EEL H+ + L K + +W + Sbjct: 176 VIDMLDEAGDAHRNSNEPRMAFSGLDLPVLA-ATGEELAAHEAQLDALDKSVKGSCVWRK 234 Query: 240 YISSNQ 245 ++ + Sbjct: 235 EAAAGE 240 >gi|114321140|ref|YP_742823.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227534|gb|ABI57333.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 243 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 137/241 (56%), Gaps = 13/241 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ DR+IEIG VEL+D T F +L P+ R+ EA+++HGI Sbjct: 1 MRQIVLDTETTGLEWSQGDRVIEIGCVELVDRRPTGNNFHQYLNPD-REVPQEAVEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 T++FL DKP F + F ++ + +E + HNA FDVGF++ EL R+ + D + Sbjct: 60 TNDFLADKPRFHEVAERFVEYI--RGSELVIHNAAFDVGFLDYELSRLGRGWGRVEDFAS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR++HP RN L++LCKRY + + R HGALLD+ +L+DVY+ M G + Sbjct: 118 VLDTLLLARQRHPGQRNSLDALCKRYDVDNTQRELHGALLDARILADVYLAMTGGQKAL- 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 F E + + E + + R + R + E H+ + + K W Sbjct: 177 FTLDEEEAQAHEGEGGGIRRLP-SDRPRLAVVRAGEAERRAHEALLDRIDKASGGGCRWR 235 Query: 239 R 239 R Sbjct: 236 R 236 >gi|254491084|ref|ZP_05104265.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxidans DMS010] gi|224463597|gb|EEF79865.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxydans DMS010] Length = 245 Score = 240 bits (614), Expect = 9e-62, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 142/245 (57%), Gaps = 14/245 (5%) Query: 1 MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + R+++ D ETTG+ + + RIIEIG VE+++ T +TF ++ P R A Sbjct: 1 MAELTQKRQVILDTETTGISTADDHRIIEIGCVEMVNRRLTGQTFHQYINPQ-RDIDAGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-- 117 +++HGIT+EFL DKP F+ I EF F + AE + HNA FDVGFIN EL +++ + Sbjct: 60 IEVHGITNEFLADKPLFTEIAEEFLSFI--EGAELVIHNAPFDVGFINHELAKLDGETRR 117 Query: 118 -LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 S ++DTL +AR KHP +N+L++LCKRY + ++R HGALLD+ +L+DVY+ M Sbjct: 118 VETLSTVLDTLKMARDKHPGQKNNLDALCKRYDVNNANRELHGALLDAEILADVYLAMTG 177 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--- 233 G Q++ ED K+ I+ LKR+ + + +EL H ++ + K Sbjct: 178 G--QVSLTLMAKEDATPKKGDGQA-EITQLKRESLMVLKANDDELAAHQDMLEKVNKASD 234 Query: 234 -NAIW 237 +W Sbjct: 235 GQCVW 239 >gi|75674304|ref|YP_316725.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi Nb-255] gi|74419174|gb|ABA03373.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi Nb-255] Length = 239 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 140/239 (58%), Gaps = 9/239 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T +TF ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEMFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F+ + EF +F +A + HNA FD+ FINAEL R+ + + R++D Sbjct: 60 SSDFLADKPLFAHVVDEFLEFIG--DAPLVIHNASFDISFINAELDRLKRQAIGRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ G Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLI-GARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 R ++ + +R PL +R+T + H + I TLG+ AIW ++ + Sbjct: 177 VETAPR----QRGGSLEMPRRQRTVPLASRVTAADRIAHREFIATLGEKAIWMEFLEQD 231 >gi|292487330|ref|YP_003530202.1| DNA polymerase III subunit epsilon [Erwinia amylovora CFBP1430] gi|292898576|ref|YP_003537945.1| DNA polymerase III subunit epsilon [Erwinia amylovora ATCC 49946] gi|291198424|emb|CBJ45532.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC 49946] gi|291552749|emb|CBA19794.1| DNA polymerase III epsilon subunit [Erwinia amylovora CFBP1430] gi|312171436|emb|CBX79694.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC BAA-2158] Length = 249 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 141/249 (56%), Gaps = 17/249 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R Sbjct: 1 MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLI 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+F+ I +F + N AE + HNA FD+GF++ E ++ + Sbjct: 60 DPEAFGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQR 117 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +I D+L++AR+ P RN L++LC RY I S R+ HGALLDS +L++V++ Sbjct: 118 GIAKTETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231 M G + + F + +R +++ +T+ I+ R +++EL H+ + + Sbjct: 178 TMTGGQTSLAFSME--GEREKQQDGETIQRIAR-PASGLRVVRASEQELMAHEARLDLVE 234 Query: 232 --GKNAIWD 238 G + +W Sbjct: 235 KKGGSCLWR 243 >gi|148979853|ref|ZP_01815731.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] gi|145961545|gb|EDK26846.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3] Length = 255 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 89/243 (36%), Positives = 137/243 (56%), Gaps = 20/243 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++++ RI+EIGAVE+++ T R F V++ P+ R EA+ Sbjct: 22 RIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYIKPD-RAIQEEAIG 80 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITDEFL DKP + I EF DF + AE +AHNA FD GF++ E ++++ Sbjct: 81 VHGITDEFLVDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLDPTIGKTD 138 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL +A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 139 DYCKVTDTLDMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 198 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236 + + F + +E R R T +E++ H + + K + + Sbjct: 199 TSLQF------NAGQQEGGVESIRRVESGRKSLKVLRATADEVEAHQSRLDLVEKSGSCL 252 Query: 237 WDR 239 W + Sbjct: 253 WRQ 255 >gi|190150601|ref|YP_001969126.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303252089|ref|ZP_07338258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|189915732|gb|ACE61984.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649071|gb|EFL79258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 257 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 90/251 (35%), Positives = 140/251 (55%), Gaps = 16/251 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + Sbjct: 60 DEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117 Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 MM GG G + + I+ + + +++EE H++ ++ + Sbjct: 178 -MMTGGQLALLGEEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236 Query: 233 K----NAIWDR 239 K N IW R Sbjct: 237 KKSKGNCIWMR 247 >gi|91974903|ref|YP_567562.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB5] gi|91681359|gb|ABE37661.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB5] Length = 231 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 98/238 (41%), Positives = 138/238 (57%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T + F ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQAFHRYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF DF +A + HNA FD GF+NAEL R+++ + R++D Sbjct: 60 SAEFLADKPLFAQVVDEFLDFIG--DAPLVIHNASFDAGFLNAELARLSRAAIPRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILA 177 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 + +R + K +R PL R+T+ +LD H I T+G AIW Y + Sbjct: 178 EVPSERAGQGGDK-----PRRQRSTPLAARVTELDLDAHRAFIATMGDKAIWKEYPAG 230 >gi|120554453|ref|YP_958804.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8] gi|120324302|gb|ABM18617.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8] Length = 236 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 93/244 (38%), Positives = 147/244 (60%), Gaps = 14/244 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D + RIIEIG VE+++ T R + V++ P R+ EA+ +HGI Sbjct: 1 MRQIVLDTETTGIDPNEGHRIIEIGCVEVIERELTGRNYHVYINPE-REVEAEAITVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123 T+EFL DKP F+ + EF++F + AE + HNA FDVGF+++E R+ + D I Sbjct: 60 TNEFLADKPKFAEVADEFFEFI--KGAELVIHNAAFDVGFMDSEFARLKPVRKTADHCGI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +D+L+IAR+KHP +N+L++LCKRYG+ S+R HGALLD+ +L+DVY+ M G + ++ Sbjct: 118 VDSLAIARKKHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVYLLMTGGQTALSL 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRY 240 + ++ ++ +R R T +E HD+ + + K A +W R Sbjct: 178 DAGSGDEGGDGGIRRIS-----GERAPLAVVRATSDEASAHDEFMAMMEKQAGETVWSRL 232 Query: 241 ISSN 244 ++ Sbjct: 233 QATE 236 >gi|78065897|ref|YP_368666.1| DNA polymerase III subunit epsilon [Burkholderia sp. 383] gi|77966642|gb|ABB08022.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383] Length = 244 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 93/239 (38%), Positives = 136/239 (56%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + ++ DF Q+AE I HNA FD+GF++AE R++ P + Sbjct: 60 TTEFLSDKPKFAEVANQIRDFV--QDAELIIHNAPFDLGFLDAEFARLDLPPFTKHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 +D +SL D P+ + +EL H + L K+ +W Sbjct: 176 VIDMLDDAGADGGAGNGQRVSLAALDLPVVA-ASDDELAAHQAQLDELDKSVKGTCVWR 233 >gi|154251704|ref|YP_001412528.1| DNA polymerase III subunit epsilon [Parvibaculum lavamentivorans DS-1] gi|154155654|gb|ABS62871.1| DNA polymerase III, epsilon subunit [Parvibaculum lavamentivorans DS-1] Length = 228 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 93/232 (40%), Positives = 137/232 (59%), Gaps = 11/232 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+ R++EIG +EL ++ T + F ++ P R A ++HG+ Sbjct: 1 MREIVLDTETTGISPNDGHRLVEIGCLELFNHVVTGKYFHAYIDPE-RDMPEGAFRIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL+ KP F+ + +F F E + HNA FD+GFINAEL+RI + L SR D Sbjct: 60 SSDFLRGKPKFAEVADDFLAFIGED--PLVIHNAAFDMGFINAELKRIGRPALPVSRATD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARRK P ++N L++LC+R+G+ S R+KHGALLDS LL++VY+++M GG Q Sbjct: 118 TLDIARRKFPGAQNSLDALCRRFGVDNSGRTKHGALLDSELLAEVYLELM-GGRQPGLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + + E ++ RD L R+T+ E HD + TLG +W Sbjct: 177 QADYAGMKGE------RVTRAPRDIALPPRLTEAEKAAHDAFVATLGGEPLW 222 >gi|115351214|ref|YP_773053.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD] gi|115281202|gb|ABI86719.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] Length = 244 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 136/240 (56%), Gaps = 13/240 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + + DF ++AE I HNA FD+GF++AE R++ P + Sbjct: 60 TTEFLSDKPKFAEVVDQIRDFV--KDAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 +D +SL P+ + + +EL H + L K+ +W + Sbjct: 176 VIDMLDDAGADGGAANGQRVSLASLALPVLS-ASDDELAAHQTQLDELDKSVKGTCVWRQ 234 >gi|172060228|ref|YP_001807880.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6] gi|171992745|gb|ACB63664.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] Length = 244 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 135/245 (55%), Gaps = 13/245 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + + DF + AE I HNA FD+GF++AE R++ P + Sbjct: 60 TTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 +D +SL P+ + +EL H + L K+ +W + Sbjct: 176 VIDMLDDAGADGGAANGQRVSLASLALPVLA-ASDDELAAHQTQLDELDKSVKGTCVWRQ 234 Query: 240 YISSN 244 + Sbjct: 235 SAEVD 239 >gi|254466659|ref|ZP_05080070.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I] gi|206687567|gb|EDZ48049.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I] Length = 241 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 21/246 (8%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D DRI+EIGAVEL ++ T +TF ++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPFSGDRIVEIGAVELYNHMPTGKTFHEYINPE-RSMPAEAFSVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F+ I +F DF Q++ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQKPEPGAVTLRDKPVFAKIGRKFLDFV--QDSRLVIHNASFDMKFLNAELDW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L + +DTL++AR++ P S L++LC+R+ I ++R+ HGALLDS +L+DVY+ Sbjct: 118 MGLPKLPMDQALDTLAMARKRFPGSPATLDALCRRFNIDNTNRTLHGALLDSEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ GG Q +FG + + + + R PL RIT EE H+ + LG Sbjct: 178 ELI-GGRQPDFGLSAQSSSSSAQVED---DWRPVPRSAPLPARITAEEQAAHEAFVAKLG 233 Query: 233 KNAIWD 238 A+W Sbjct: 234 DAALWK 239 >gi|171318244|ref|ZP_02907407.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] gi|171096588|gb|EDT41482.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] Length = 244 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 135/239 (56%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + DR+IEIG VELL+ T +++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + + DF ++AE I HNA FD+GF++AE R++ P + Sbjct: 60 TTEFLSDKPKFAEVVDQIRDFV--KDAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 +D +SL D P+ + +EL H + L K+ +W Sbjct: 176 VIDMLDDAGADGGAANGQRVSLASLDLPVLA-ASDDELAAHQTQLDELDKSVKGTCVWR 233 >gi|303250637|ref|ZP_07336834.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650625|gb|EFL80784.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 257 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 90/251 (35%), Positives = 140/251 (55%), Gaps = 16/251 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + Sbjct: 60 EEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117 Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 MM GG G + + I+ + + +++EE H++ ++ + Sbjct: 178 -MMTGGQLALLGEEDATATHENVADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236 Query: 233 K----NAIWDR 239 K N IW R Sbjct: 237 KKSKGNCIWMR 247 >gi|251788641|ref|YP_003003362.1| DNA polymerase III subunit epsilon [Dickeya zeae Ech1591] gi|247537262|gb|ACT05883.1| DNA polymerase III, epsilon subunit [Dickeya zeae Ech1591] Length = 244 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 89/242 (36%), Positives = 139/242 (57%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYLRPD-RLVDPEAYNI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+++ + +F DF + AE + HNA FD+GF++ E + + +D Sbjct: 66 HGISDEFLVDKPTYADVADDFLDFI--RGAELVIHNASFDIGFMDYEFRLLGRDIPKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + E + + +T+ IS + EEL H++ + + G + + Sbjct: 184 SLAFSME-GEGQQQAVQTETIQRISR-PASALAVLYASDEELIAHEQRLDLIMKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|271501671|ref|YP_003334697.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech586] gi|270345226|gb|ACZ77991.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech586] Length = 244 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 139/242 (57%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYLRPD-RLIDPEAYNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+++ + +F DF + AE + HNA FD+GF++ E + + +D Sbjct: 66 HGISDEFLADKPTYAEVADDFIDFI--RGAELVIHNASFDIGFMDYEFRLLGRDIPKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + E + + +T+ IS + +EL H++ + + G + + Sbjct: 184 SLAFSME-GESQQQTVQAETIQRISR-PTSALTVLYASDDELVAHEQRLDLIMKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|312883833|ref|ZP_07743552.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC BAA-2122] gi|309368582|gb|EFP96115.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC BAA-2122] Length = 244 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 141/245 (57%), Gaps = 19/245 (7%) Query: 5 NKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++ R IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R E Sbjct: 8 DQHRIIVLDTETTGMNLEGGPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQAE 66 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---K 115 A+ +HGITDEFL+DKP + + +EF F N AE +AHNA FDVGF++ E ++ Sbjct: 67 AVGVHGITDEFLRDKPEYKDVHAEFLAFIN--GAELVAHNASFDVGFMDYEFSMLDASIG 124 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M Sbjct: 125 KTAQYCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMT 184 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN- 234 G + + F + + + K+ R R T +E+D H+K ++ + KN Sbjct: 185 GGQTSLQFNAGSASEEGVESIKRAAQG-----RKALKVLRATADEIDAHEKRLELIEKNG 239 Query: 235 -AIWD 238 +W Sbjct: 240 HCLWR 244 >gi|238750479|ref|ZP_04611980.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380] gi|238711410|gb|EEQ03627.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380] Length = 259 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 142/255 (55%), Gaps = 17/255 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R Sbjct: 6 MQVTPTRQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLID 64 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA +HGI+DEFL DKP+F+ I EF +F + AE + HNA FD+GF++ E + + +D Sbjct: 65 PEAYGVHGISDEFLADKPTFADITPEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 122 Query: 117 PLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ Sbjct: 123 IPKTETFCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLA 182 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-- 231 M G + ++F + D+ + + I+ ++EL H+ + + Sbjct: 183 MTGGQTSLSFSME--GDQSQNNSSEDIQRITR-PASGLKIIYAAEDELKAHESRLDLVMK 239 Query: 232 -GKNAIWDRYISSNQ 245 G + +W + + + Sbjct: 240 KGGSCLWRMPLDTEE 254 >gi|76810101|ref|YP_333003.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 1710b] gi|121601053|ref|YP_992607.1| DNA polymerase III subunit epsilon [Burkholderia mallei SAVP1] gi|124385495|ref|YP_001026592.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10229] gi|126441990|ref|YP_001058508.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668] gi|126455280|ref|YP_001065768.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 1106a] gi|134282747|ref|ZP_01769450.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305] gi|217423557|ref|ZP_03455058.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576] gi|226196200|ref|ZP_03791785.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pakistan 9] gi|237811761|ref|YP_002896212.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei MSHR346] gi|238563612|ref|ZP_00438559.2| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse 4] gi|242318034|ref|ZP_04817050.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1106b] gi|251767848|ref|ZP_02268597.2| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20] gi|254177751|ref|ZP_04884406.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC 10399] gi|254180217|ref|ZP_04886816.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1655] gi|254197669|ref|ZP_04904091.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13] gi|254199436|ref|ZP_04905802.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH] gi|254258454|ref|ZP_04949508.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1710a] gi|254298053|ref|ZP_04965506.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 406e] gi|254358851|ref|ZP_04975124.1| DNA polymerase III, epsilon subunit [Burkholderia mallei 2002721280] gi|76579554|gb|ABA49029.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1710b] gi|121229863|gb|ABM52381.1| DNA polymerase III, epsilon subunit [Burkholderia mallei SAVP1] gi|124293515|gb|ABN02784.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC 10229] gi|126221483|gb|ABN84989.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 668] gi|126228922|gb|ABN92462.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1106a] gi|134245833|gb|EBA45924.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305] gi|147749032|gb|EDK56106.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH] gi|148027978|gb|EDK85999.1| DNA polymerase III, epsilon subunit [Burkholderia mallei 2002721280] gi|157807726|gb|EDO84896.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 406e] gi|160698790|gb|EDP88760.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC 10399] gi|169654410|gb|EDS87103.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13] gi|184210757|gb|EDU07800.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1655] gi|217393415|gb|EEC33436.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576] gi|225931786|gb|EEH27788.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pakistan 9] gi|237504517|gb|ACQ96835.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei MSHR346] gi|238520320|gb|EEP83781.1| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse 4] gi|242141273|gb|EES27675.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1106b] gi|243061566|gb|EES43752.1| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20] gi|254217143|gb|EET06527.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 1710a] Length = 253 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 135/244 (55%), Gaps = 13/244 (5%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R MR+I+ D ETTGL+++ DRIIEIG VELL+ T + ++ P R + P AL Sbjct: 10 RFPDMRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPE-RDSDPGALA 68 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--D 119 +HG+T EFL DKP F+ I DF ++AE I HNA FD+GF++AE + Sbjct: 69 VHGLTTEFLSDKPKFAEIVDPLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPSFTDH 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + +IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Sbjct: 127 CAGVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG-- 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235 Q + ++ P ++ D P+ T EL H+ + L K+ Sbjct: 185 QESLVIDMLDEAGDAHRNGDAPRMAFSGLDLPVLA-ATDAELAAHEAQLDALDKSAKGVC 243 Query: 236 IWDR 239 +W + Sbjct: 244 VWRK 247 >gi|293390398|ref|ZP_06634732.1| DNA polymerase III, epsilon subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950932|gb|EFE01051.1| DNA polymerase III, epsilon subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 253 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 90/249 (36%), Positives = 142/249 (57%), Gaps = 17/249 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 I+ N R+IV D ETTG++ + IIEIGAVE+++ T F +++ PN R Sbjct: 3 IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 P+A+K+HGITDE L DKP FS +EF ++ + AE + HNA FDVGF++ E ++N Sbjct: 62 PDAIKVHGITDEMLADKPDFSQAANEFIEYI--KGAELLIHNAPFDVGFMDYEFAKLNLP 119 Query: 117 PLDPSRII--DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + DTL++AR+ +P +N+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 120 IKTNDICLVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAM 179 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G + + F +E + + +++ T+EEL H + ++ + K Sbjct: 180 TGGQTSL---FDESEPEIIQHAGEQQVQSAVVFSHNLRLLTPTEEELQAHLEYLKLINKK 236 Query: 234 ---NAIWDR 239 N +W+R Sbjct: 237 SRDNCLWER 245 >gi|260581298|ref|ZP_05849115.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW] gi|260092047|gb|EEW75993.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW] Length = 256 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 94/258 (36%), Positives = 146/258 (56%), Gaps = 19/258 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQINFGFKTNED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G + + ++ E R +E+ ++ + T +EL H + ++ Sbjct: 176 MTGGQTNLFDEEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKM 235 Query: 231 LGK----NAIWDRYISSN 244 + K N +WD+ +N Sbjct: 236 MNKKSGNNCLWDKRFGNN 253 >gi|329891169|ref|ZP_08269512.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC 11568] gi|328846470|gb|EGF96034.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC 11568] Length = 241 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 89/235 (37%), Positives = 136/235 (57%), Gaps = 10/235 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG D K DR+IE+G +E+ D T RTF F+ P R P+A+K+HGIT Sbjct: 3 REIVLDTETTGFDPKTGDRLIEVGCIEIEDLLPTGRTFHRFINPE-RLIPPDAIKVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +KD P F + + +F +A IAHNA FD FI+ E+ RI + P R IDT Sbjct: 62 DDKVKDAPKFHEVVDDLMEFLG--DAPLIAHNANFDRNFIDFEIGRIGRTPPPQDRWIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LCKRY I++ R+ HGAL+D+ LL++VY+++ GG + Sbjct: 120 LALAQKRFPGMANSLDALCKRYKISLVERTLHGALIDARLLAEVYLEL-RGGKERALDLT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI-QTLGKNAIWDRY 240 + +T ++ R +PL + +T EE H + T+ ++W Y Sbjct: 179 STR----GGAAETAERVAYGARPRPLPSFVTAEEEAAHLAFLKATIKDFSLWAGY 229 >gi|238897890|ref|YP_002923569.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465647|gb|ACQ67421.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 241 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 95/242 (39%), Positives = 140/242 (57%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTGL+ + IIEIGAVE+++ T +TF ++ PN R+ PEA ++ Sbjct: 3 RQIVLDTETTGLNKTGPHYEGHNIIEIGAVEVINRRLTGKTFHTYVRPN-RQVDPEAYQI 61 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI+DEFL DKP FS IFS+F++F + +E I HNA FD+GF++ E + ++ + Sbjct: 62 HGISDEFLSDKPRFSEIFSQFFEFI--RGSELIIHNAAFDIGFMDYEFSALQQNIPKTNT 119 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 DTL++ARR P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 120 FCTVTDTLALARRLFPGKRNSLDALCDRYQIDNSKRTLHGALLDAQILAEVYLAMTGGQT 179 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AI 236 +F +T+E TV + + + +ELDEH ++ L K I Sbjct: 180 LFSFSDETDETDIRNM---TVRPKRVKTSSQLKIIYASCDELDEHQASLDLLEKKEGSCI 236 Query: 237 WD 238 W Sbjct: 237 WR 238 >gi|322515310|ref|ZP_08068307.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus ureae ATCC 25976] gi|322118686|gb|EFX90898.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus ureae ATCC 25976] Length = 257 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 139/251 (55%), Gaps = 16/251 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + Sbjct: 60 EEEAIKVHGITNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117 Query: 116 DPLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEICSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + G + + I+ + + ++++EE H++ ++ + Sbjct: 178 IMTGGQLAL-LGEEDASTNHENITDLGLGTITKFETSGLIVLQLSEEEQAAHEEYLKLID 236 Query: 233 K----NAIWDR 239 K N IW R Sbjct: 237 KKSKGNCIWMR 247 >gi|27365234|ref|NP_760762.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6] gi|37680713|ref|NP_935322.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016] gi|320155618|ref|YP_004187997.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O] gi|27361381|gb|AAO10289.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus CMCP6] gi|37199462|dbj|BAC95293.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016] gi|319930930|gb|ADV85794.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O] Length = 243 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 93/243 (38%), Positives = 141/243 (58%), Gaps = 21/243 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ P+A+ Sbjct: 11 RIVVLDTETTGMNREGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAID 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITD+FL DKP + + EF +F + AE +AHNA FDVGF++ E +++ Sbjct: 70 VHGITDQFLVDKPEYRQVHQEFLEFI--KGAELVAHNAPFDVGFMDYEFGKLDAAIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGG- 186 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 Q + F N E+ + V R R T +EL+ H + + K+ + Sbjct: 187 -QTSLEFNANSQEGGGEDIRRVAG-----RKSLKVLRATADELEAHQSRLDIVEKSGTCL 240 Query: 237 WDR 239 W + Sbjct: 241 WRQ 243 >gi|85714087|ref|ZP_01045076.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A] gi|85699213|gb|EAQ37081.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A] Length = 230 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 97/237 (40%), Positives = 140/237 (59%), Gaps = 9/237 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++E+G VE+ + T +TF ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPVRGDRLVELGCVEIFNRMPTGQTFHCYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + EF +F +A I HNA FD+ FINAEL+R+ + + R++D Sbjct: 60 SSEFLADKPLFAQVVDEFLEFIG--DAPLIIHNASFDISFINAELERLKRQVIGRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ G Q Sbjct: 118 TLLIARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLI-GARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 R + + +R PL +R+T+ + H + TLG+ AIW +++ Sbjct: 177 TETTSRQLGGTLE----LPRRQRTVPLASRVTEADRIAHRNFVATLGEKAIWTEFLA 229 >gi|149377452|ref|ZP_01895195.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893] gi|149358293|gb|EDM46772.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893] Length = 236 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 93/242 (38%), Positives = 149/242 (61%), Gaps = 14/242 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D + RIIEIG VEL++ T R + V++ P R+ EA+ +HGI Sbjct: 1 MRQIVLDTETTGIDPAEGHRIIEIGCVELMERQITGRHYHVYINPE-REVEAEAITVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123 T+EFL DKP F++I EF++F + AE + HNA FD+GF+++E R+ + + + Sbjct: 60 TNEFLADKPKFAAIADEFFEFI--KGAELVIHNAAFDIGFMDSEFARLKPVRRTTEHCGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +D+L+IAR+KHP +N+L++LCKRYGI S+R HGALLD+ +L+DVY+ + G + ++ Sbjct: 118 VDSLAIARKKHPGQKNNLDALCKRYGIDNSNRELHGALLDAEILADVYLLLTGGQTALSL 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRY 240 +E ++ + R+ R + +E + HD+ + L K A +WD+ Sbjct: 178 DAGGDEAGGEGGIRRLADD-----RNPLPVPRASDDERNAHDEFMALLAKQAGTTVWDKL 232 Query: 241 IS 242 + Sbjct: 233 TT 234 >gi|261868455|ref|YP_003256377.1| DNA polymerase III subunit epsilon [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413787|gb|ACX83158.1| DNA polymerase III, epsilon subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 253 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 143/249 (57%), Gaps = 17/249 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 I+ N R+IV D ETTG++ + IIEIGAVE+++ T F +++ PN R Sbjct: 3 IQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPN-RPVD 61 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 P+A+K+HGITDE L DKP FS + ++F ++ + AE + HNA FDVGF++ E ++N Sbjct: 62 PDAIKVHGITDEMLADKPDFSQVANQFIEYI--KGAELLIHNAPFDVGFMDYEFAKLNLP 119 Query: 117 PLDPSRII--DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + DTL++AR+ +P +N+L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 120 IKTNDICLVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDADILADVYLAM 179 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G + + F +E + + +++ T+EEL H + ++ + K Sbjct: 180 TGGQTSL---FDESEPEIIQHAGEQQVQSTVVFSHNLRLLTPTEEELQAHLEYLKLINKK 236 Query: 234 ---NAIWDR 239 N +W+R Sbjct: 237 SKDNCLWER 245 >gi|253988342|ref|YP_003039698.1| DNA polymerase III subunit epsilon [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779792|emb|CAQ82953.1| putative DNA polymerase III epsilon chain [Photorhabdus asymbiotica] Length = 248 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ + +IIEIGAVE+++ T R F +++ P+ R PEA ++ Sbjct: 7 RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHIYVKPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL+DKP F+ I EF +F + AE I HNA FD+GF++ E ++N+D Sbjct: 66 HGISDEFLQDKPLFADIADEFIEFI--RGAELIIHNAPFDIGFMDYEFGKLNRDIPPTTD 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L +AR P RN+L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKVTDSLQLARALFPGKRNNLDALCDRYDIDNSQRTLHGALLDAEILADVYLIMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + + V I+ + T EEL H+ + + G + + Sbjct: 184 ALAFSME--GEVSGSANVSEVQRITRPQ-TALKVIYATGEELAAHESRLDLVEKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|126667360|ref|ZP_01738332.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] gi|126628116|gb|EAZ98741.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17] Length = 236 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 93/244 (38%), Positives = 146/244 (59%), Gaps = 14/244 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D + RIIEIG VEL++ + T R + V++ P GR+ EA+ +HGI Sbjct: 1 MRQIVLDTETTGIDPNEGHRIIEIGCVELVERTLTGRNYHVYVNP-GREVEAEAVAIHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI--NKDPLDPSRI 123 T+EFL DKP F+ + EF++F + AE + HNA FDVGF++AE R+ + + I Sbjct: 60 TNEFLADKPLFAVVADEFFEFI--RGAELVIHNAAFDVGFMDAEFGRLDGGRKTAEHCGI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL+IAR++HP +N+LN+LCKRYG+ S+R HGALLD+ +L+DVY+ + G + + Sbjct: 118 VDTLAIARKRHPGQKNNLNALCKRYGVDNSNRELHGALLDAEILADVYLLLTGGQTALLL 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRY 240 + E ++ R+ R + +E H + + + K A +W + Sbjct: 178 DAGSGEGAHGDGIRRV-----QAAREALQVIRASADEDLAHREFMAMMEKKAGSTVWSQV 232 Query: 241 ISSN 244 + + Sbjct: 233 LGAE 236 >gi|238790133|ref|ZP_04633910.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC 33641] gi|238721802|gb|EEQ13465.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC 33641] Length = 259 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 142/255 (55%), Gaps = 17/255 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R Sbjct: 6 MQVTPTRQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYVKPD-RLVD 64 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA +HGI+DEFL DKP+F+ I EF +F + AE + HNA FD+GF++ E + + +D Sbjct: 65 PEAYGVHGISDEFLADKPTFADITPEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 122 Query: 117 PLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ Sbjct: 123 IPKTETFCTITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLA 182 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-- 231 M G + ++F + D+ + + + I + EEL+ H+ + + Sbjct: 183 MTGGQTSLSFSME--GDQSQNDSSEDIQRI-IRPASGLKIIYAADEELEAHNSRLDLVMK 239 Query: 232 -GKNAIWDRYISSNQ 245 G + +W + + Sbjct: 240 KGGSCLWRMPLEPEE 254 >gi|107022359|ref|YP_620686.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia AU 1054] gi|116689306|ref|YP_834929.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia HI2424] gi|105892548|gb|ABF75713.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116647395|gb|ABK08036.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] Length = 244 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 136/240 (56%), Gaps = 13/240 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + + DF ++AE I HNA FD+GF++AE R+ P + Sbjct: 60 TTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 +D +SL D + T +++EL H + L K+ +W + Sbjct: 176 VIDMLDDAGADGGAANGKRVSLAALDLAVVT-ASEDELAAHQAQLDELDKSVKGTCVWRQ 234 >gi|115522405|ref|YP_779316.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisA53] gi|115516352|gb|ABJ04336.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisA53] Length = 229 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 92/236 (38%), Positives = 138/236 (58%), Gaps = 9/236 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+L+ T + + ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEILNRMPTGQIYHCYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL KP F+ + EF F +A + HNA FD+GFINAEL R+++ P+ R++D Sbjct: 60 SAEFLSTKPLFAEVAEEFLAFIA--DAPLVIHNASFDIGFINAELARLSQPPIPRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VY+ ++ Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLIGARQSQLILA 177 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 +T +R + + +R+ L R++ + + H + TLG IW+ Y+ Sbjct: 178 ETGSERASR-----AADAPRRQRETALVARVSDADREAHRAFVATLGDKPIWNEYL 228 >gi|238921062|ref|YP_002934577.1| DNA polymerase III subunit epsilon [Edwardsiella ictaluri 93-146] gi|238870631|gb|ACR70342.1| DNA polymerase III, epsilon subunit, putative [Edwardsiella ictaluri 93-146] Length = 243 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 90/242 (37%), Positives = 135/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFTV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+D+FL DKPSF+ + EF F + AE + HNA FD+GF++ E ++ +D Sbjct: 66 HGISDDFLLDKPSFAEVADEFLAFI--RGAELVIHNAPFDIGFMDYEFAKLGRDLPKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMTGG-- 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 Q F ++ D + + + + + ++ EL H++ + Q G + + Sbjct: 182 QTLLAFSSDGDGASQSQASEIRRV-VRGAKGLRVVYASEVELAAHEQRLDLVQKKGDSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|332162776|ref|YP_004299353.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606882|emb|CBY28380.1| DNA polymerase III epsilon subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|325667006|gb|ADZ43650.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861137|emb|CBX71400.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica W22703] Length = 260 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 86/255 (33%), Positives = 140/255 (54%), Gaps = 17/255 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R Sbjct: 1 MQVTPTRQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVD 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA +HGI+DEFL DKP+F+ I EF +F + AE + HNA FD+GF++ E + + +D Sbjct: 60 PEAYGVHGISDEFLADKPTFADIAPEFIEFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 117 Query: 117 PLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ Sbjct: 118 IPKTETFCTITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLA 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-- 231 M G + ++F + D+ + I+ ++EL H+ + + Sbjct: 178 MTGGQTSLSFSME--GDQSQNNSSDDIQRITR-PASGLKIIYAAEDELAAHESRLDLVMK 234 Query: 232 -GKNAIWDRYISSNQ 245 G + +W + + Sbjct: 235 KGGSCLWRMPLETED 249 >gi|301168790|emb|CBW28381.1| DNA polymerase III epsilon subunit [Haemophilus influenzae 10810] Length = 255 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 94/257 (36%), Positives = 144/257 (56%), Gaps = 18/257 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P RN+L++LC+R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTL 231 M G + + + ++KT I + T +EL H + ++ + Sbjct: 176 MTGGQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMM 235 Query: 232 GK----NAIWDRYISSN 244 K N +WD+ +N Sbjct: 236 NKKSGNNCLWDKRFGNN 252 >gi|119775015|ref|YP_927755.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119767515|gb|ABM00086.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 242 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 90/248 (36%), Positives = 135/248 (54%), Gaps = 20/248 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+I+ D ETTG++ RIIEIG VE+++ T RTF ++ P G+ Sbjct: 3 IISNAERQIILDTETTGMNQGAGAVYLGHRIIEIGCVEVVNRRLTGRTFHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 EA+ +HGIT++ + +P F I F DF + AE +AHNA FD+ FIN E + Sbjct: 62 DEEAIAVHGITNDRVAGEPRFHEIVGGFLDFI--RGAELVAHNASFDMSFINHEFSMLVP 119 Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D ++D+L+IA+ HP +N+L++LCKRYGI + R+ HGALLD+ +L+DVY+ Sbjct: 120 QGPKVEDICTVLDSLAIAKFLHPGQKNNLDALCKRYGIDNTRRTYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G ++ N D +E+ + S R R T +EL H+K + +G Sbjct: 180 VMTGGQTKFNLH----ADEGSQEQGGIIRLDS--NRPSLKVVRATADELGNHEKRLDLVG 233 Query: 233 K--NAIWD 238 K +W Sbjct: 234 KSGKCLWR 241 >gi|256823144|ref|YP_003147107.1| DNA polymerase III subunit epsilon [Kangiella koreensis DSM 16069] gi|256796683|gb|ACV27339.1| DNA polymerase III, epsilon subunit [Kangiella koreensis DSM 16069] Length = 233 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 98/237 (41%), Positives = 142/237 (59%), Gaps = 11/237 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ RIIEIG VEL++ T + +L P+ R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEPYDGHRIIEIGCVELVNRKFTGNHYHQYLQPD-REIDQGAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPLDPSR 122 T+EFL+DKP F + EF +F + AE + HNA FDVGF++ EL + D Sbjct: 60 TNEFLEDKPRFVDVVDEFLEFI--EGAELVIHNAPFDVGFLDHELSMLDSSKGKLSDYCT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+ HP RN L++LCKRY I SHR HGALLDS +L+DVY++M G + + Sbjct: 118 VLDTLVLARQMHPGQRNSLDALCKRYEIDNSHRELHGALLDSEILADVYLRMTGGQTSLT 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 G + ++ E TV IS R + T++E EH + + +L +AIW++ Sbjct: 178 LGRQNAANQQTTET--TVRRIS-ANRQPLKVIKATEQESKEHQQKLSSLN-DAIWNQ 230 >gi|86747524|ref|YP_484020.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris HaA2] gi|86570552|gb|ABD05109.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris HaA2] Length = 231 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 95/238 (39%), Positives = 136/238 (57%), Gaps = 9/238 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T + + ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQVYHQYINPE-RDMPAEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ + F DF +A + HNA FD+GFINAEL R+++ + R++D Sbjct: 60 SSEFLADKPVFAQVADAFIDFIG--DAPLVIHNASFDIGFINAELARLSRAAIPRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ G Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLI-GARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 E + +R L R+T +L+ H I +G AIW+ Y ++ Sbjct: 177 A----EVPSERSGAGGDTPRRQRSIALTPRVTDADLEAHRAFIALMGDKAIWNEYTAA 230 >gi|119471754|ref|ZP_01614114.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Alteromonadales bacterium TW-7] gi|119445377|gb|EAW26665.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Alteromonadales bacterium TW-7] Length = 237 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 141/238 (59%), Gaps = 13/238 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+D K RIIEIG VEL++ T F V++ P R EA+ +HGIT Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RSIEEEAIDVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSRI 123 +EFL+DKP + I EF+D+ + AE + HNA FDVG ++ E +N+ D ++ Sbjct: 63 NEFLRDKPLYRDIAQEFFDYI--KGAELVIHNAPFDVGHMDNEFALLNQGFPNTHDYCQV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR HP +N+L++LC+RY I + R+ HGALLDS +L+DVY+ M G +++N Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDIDNAKRTLHGALLDSEILADVYLAMTGGQTKLN- 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238 N+D ++++ + ++ +R + R T EE H+ + + G +W Sbjct: 180 -LNQNKDDGSEQQQGGIRRLN-SERAPLVVLRATDEEQSAHEARLDLVNKEGGQCLWR 235 >gi|70730658|ref|YP_260399.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf-5] gi|68344957|gb|AAY92563.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens Pf-5] Length = 249 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 98/249 (39%), Positives = 139/249 (55%), Gaps = 14/249 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122 +EFL KP F+ + EF+DF Q A+ I HNA FDVGFIN E + + D Sbjct: 63 NEFLVGKPRFAEVADEFFDFI--QGAQLIIHNAAFDVGFINNEFALMGQHERADITQHCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 121 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLS 180 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKN----AI 236 ++ E I L D+P + + EL EH ++ + K+ A+ Sbjct: 181 LAGNASDGNGSGEGAGQASEIRRLPADRPRGRIIQASDAELAEHQVRLEIIAKSAGAPAL 240 Query: 237 WDRYISSNQ 245 W + + + Q Sbjct: 241 WTQLLETQQ 249 >gi|167582322|ref|ZP_02375196.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis TXDOH] gi|167620419|ref|ZP_02389050.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis Bt4] Length = 241 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 140/245 (57%), Gaps = 13/245 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIE+G VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL+DKP F+ I + DF ++AE I HNA FD+GF++AE + + + Sbjct: 60 TTEFLRDKPKFADIVDQLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPAFSDHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 ++ K P ++ D P+ T EEL +H+ + L K+ +W + Sbjct: 176 VIDMLDEAGDAHRKGDEPRMAFSGLDLPVLA-ATDEELADHEAQLDALDKSVKGACVWRK 234 Query: 240 YISSN 244 + + Sbjct: 235 EAAVD 239 >gi|165976701|ref|YP_001652294.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876802|gb|ABY69850.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 257 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 89/251 (35%), Positives = 140/251 (55%), Gaps = 16/251 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQPIVRQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+D+P F+ + EF +F + AE I HNA FDV F++ E + Sbjct: 60 EEEAIKVHGITNEFLQDRPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLEN 117 Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 MM GG G + + I+ + + +++EE H++ ++ + Sbjct: 178 -MMTGGQLALLGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLID 236 Query: 233 K----NAIWDR 239 K N IW R Sbjct: 237 KKSKGNCIWMR 247 >gi|77166266|ref|YP_344791.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC 19707] gi|254435200|ref|ZP_05048707.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27] gi|76884580|gb|ABA59261.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC 19707] gi|207088311|gb|EDZ65583.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27] Length = 243 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 136/245 (55%), Gaps = 12/245 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K RIIEIG VEL +T RTF +L P R+ ALK+HG+ Sbjct: 1 MRQIILDTETTGLEPKEGHRIIEIGGVELSCRRRTGRTFHCYLNPE-REVDKGALKIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 ++EFL DKP F I EF F + AE + HNA FDVGF++ EL + + Sbjct: 60 SNEFLSDKPRFIEIAEEFLAFI--EGAELVIHNAPFDVGFLDHELCLLGSKWGKISTDCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR++HP +N+L++LCKRYGI S R HGALLD+ +L+ VY+ M G ++ Sbjct: 118 VLDTLQLARQRHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILAGVYLAMTGGQVSLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 + F+ +S +R R ++EE HD + + G +W Sbjct: 178 LHEYGDNGLPFRVGGGNYRPVS-AERASLTIARASREERMAHDARLTAIDKASGGACLWR 236 Query: 239 RYISS 243 + SS Sbjct: 237 QLDSS 241 >gi|315497200|ref|YP_004086004.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB 48] gi|315415212|gb|ADU11853.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB 48] Length = 232 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 97/233 (41%), Positives = 139/233 (59%), Gaps = 8/233 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D K R+IE+G +E+ D T +TF + P R P+A+++HGI Sbjct: 1 MRQIVLDTETTGIDPKKGHRLIEVGCIEIEDLLPTGKTFHHYFNPE-RLIEPDAIRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE + DKP F+ + F DF +A IAHNA FD GFIN EL+R+ DP DP R +D Sbjct: 60 TDEMVADKPKFADLAQAFIDFVG--DAPIIAHNASFDRGFINMELERLGLDPTDPDRWVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR K P N L++LCKRY I+++ R KHGALLD+ LL+ VY+++ GG + Sbjct: 118 TLELARYKFPGMANSLDALCKRYNISLAERDKHGALLDARLLAGVYLEL-SGGKERGLDL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT-IQTLGKNAIW 237 K E+ + ++ +R +PL + I EE + H ++ L +W Sbjct: 177 KM--HGMVSEDGTEIRVMNHGQRPRPLPSHIHPEEAEAHKAFCLKYLKDQNMW 227 >gi|284009180|emb|CBA76234.1| DNA polymerase III subunit epsilon [Arsenophonus nasoniae] Length = 254 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 88/243 (36%), Positives = 137/243 (56%), Gaps = 18/243 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGIHYEGHNIIEIGAVEVINRRLTGRHFHVYIKP-ARLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL+DKP+F+ I EF DF + AE + HNA FD+GF++ E ++N+D Sbjct: 66 HGISDEFLQDKPTFAQIADEFLDFI--RGAELVIHNAPFDIGFMDYEFSKLNRDIPPTAN 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCQITDSLVLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLDAEILAEVYMAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---- 235 + F + + + + V I + +EE+ H+ + + K Sbjct: 184 SLAFSVDS--EPGSEVYRGDVKRIKR-QATGLSVVYANQEEIAAHEARLDLIEKKGGKIS 240 Query: 236 IWD 238 +W Sbjct: 241 LWR 243 >gi|90421821|ref|YP_530191.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB18] gi|90103835|gb|ABD85872.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB18] Length = 231 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 97/237 (40%), Positives = 134/237 (56%), Gaps = 9/237 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR++EIG VE+ + T +TF ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL KP F+ + EF +F E A + HNA FD+GFINAEL +I + P+ R++D Sbjct: 60 SAEFLSTKPLFAEVVDEFLEFIAE--APLVIHNASFDIGFINAELGKIARPPIPRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ G Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLI-GARQSQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 +R+ PL R+T + H + + TLG IW+ Y Sbjct: 177 AEAAPSRSNRPGDA----PRRQRETPLAARVTDADRIAHREFVATLGDKPIWNEYFG 229 >gi|156935271|ref|YP_001439187.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ATCC BAA-894] gi|156533525|gb|ABU78351.1| hypothetical protein ESA_03124 [Cronobacter sakazakii ATCC BAA-894] Length = 243 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 134/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFMV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119 HGI+DEFL +KP F + +F D+ + AE + HNA FD+GF++ E +N+ Sbjct: 66 HGISDEFLMNKPVFGDVVDDFLDYI--RGAELVIHNASFDIGFMDYEFGMLNRGIPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 I F E +++ T + + + R EEL H+ + Q G + + Sbjct: 184 SIAFAM---EGDGQQQQGDTGIQRVVRQASRLKVVRACDEELAAHESRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|83720697|ref|YP_443303.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis E264] gi|257139540|ref|ZP_05587802.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis E264] gi|83654522|gb|ABC38585.1| DNA polymerase III, epsilon subunit [Burkholderia thailandensis E264] Length = 241 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 140/245 (57%), Gaps = 13/245 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIE+G VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL+DKP F+ I + DF ++AE I HNA FD+GF++AE + + + Sbjct: 60 TTEFLRDKPKFADIVDQLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPAFSDHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 ++ K P ++ D P+ T EEL +H+ + L K+ +W + Sbjct: 176 VIDMLDEAGDAHRKGDEPQMAFSGLDLPVLA-ATDEELADHEAQLDALDKSVKGACVWRK 234 Query: 240 YISSN 244 + + Sbjct: 235 EAAVD 239 >gi|218557151|ref|YP_002390064.1| DNA polymerase III subunit epsilon [Escherichia coli S88] gi|218688085|ref|YP_002396297.1| DNA polymerase III subunit epsilon [Escherichia coli ED1a] gi|218698838|ref|YP_002406467.1| DNA polymerase III subunit epsilon [Escherichia coli IAI39] gi|218703464|ref|YP_002410983.1| DNA polymerase III subunit epsilon [Escherichia coli UMN026] gi|293403294|ref|ZP_06647385.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412] gi|293408304|ref|ZP_06652143.1| DNA polymerase III [Escherichia coli B354] gi|298378908|ref|ZP_06988789.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302] gi|218363920|emb|CAR01585.1| DNA polymerase III epsilon subunit [Escherichia coli S88] gi|218368824|emb|CAR16572.1| DNA polymerase III epsilon subunit [Escherichia coli IAI39] gi|218425649|emb|CAR06436.1| DNA polymerase III epsilon subunit [Escherichia coli ED1a] gi|218430561|emb|CAR11427.1| DNA polymerase III epsilon subunit [Escherichia coli UMN026] gi|221361649|emb|CAX20320.1| DNA polymerase III, epsilon subunit [Escherichia coli] gi|291429147|gb|EFF02167.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412] gi|291471482|gb|EFF13965.1| DNA polymerase III [Escherichia coli B354] gi|294493054|gb|ADE91810.1| DNA polymerase III, epsilon subunit [Escherichia coli IHE3034] gi|298280021|gb|EFI21525.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302] gi|323948751|gb|EGB44651.1| DNA polymerase III [Escherichia coli H252] gi|323958799|gb|EGB54498.1| DNA polymerase III [Escherichia coli H263] Length = 243 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 135/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F E +++ +T + + K T EEL H+ + Q G + + Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|191171395|ref|ZP_03032944.1| DNA polymerase III, epsilon subunit [Escherichia coli F11] gi|190908329|gb|EDV67919.1| DNA polymerase III, epsilon subunit [Escherichia coli F11] gi|222032040|emb|CAP74779.1| DNA polymerase III subunit epsilon [Escherichia coli LF82] gi|312944818|gb|ADR25645.1| DNA polymerase III subunit epsilon [Escherichia coli O83:H1 str. NRG 857C] gi|320197298|gb|EFW71914.1| DNA polymerase III epsilon subunit [Escherichia coli WV_060327] Length = 243 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 135/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F E +++ +T + + K T EEL H+ + Q G + + Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|301050549|ref|ZP_07197422.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1] gi|300297757|gb|EFJ54142.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1] Length = 246 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 135/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F E +++ +T + + K T EEL H+ + Q G + + Sbjct: 187 SMTFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|294637713|ref|ZP_06715990.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685] gi|291089143|gb|EFE21704.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685] Length = 243 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 134/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVINRRLTGRNFHVYLKPD-RLVDPEAFMV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+D+FL +PSF+ + EF +F + AE + HNA FD+GF++ E ++ +D Sbjct: 66 HGISDDFLLGQPSFADVVDEFLEFI--RGAELVIHNAPFDIGFMDYEFAKLGRDLPKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 ++F +E + + + ++ EL H++ + Q G + + Sbjct: 184 SLSF---ASEGDSATQVQAAELRRVVRGAQGLRVVYASEAELAAHEQRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|28899066|ref|NP_798671.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD 2210633] gi|153837020|ref|ZP_01989687.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] gi|260361704|ref|ZP_05774731.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] gi|260876852|ref|ZP_05889207.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|260897333|ref|ZP_05905829.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|260899809|ref|ZP_05908204.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|28807290|dbj|BAC60555.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD 2210633] gi|149749793|gb|EDM60538.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] gi|308088283|gb|EFO37978.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus Peru-466] gi|308091367|gb|EFO41062.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AN-5034] gi|308107229|gb|EFO44769.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ4037] gi|308113581|gb|EFO51121.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030] Length = 240 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 144/239 (60%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ PEA++ Sbjct: 11 RIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQ 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITDEFL DKP ++SI EF DF + AE +AHNA FD GF++ E ++++ Sbjct: 70 VHGITDEFLVDKPEYASIHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLDPTIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + + F E +T+ I R R T +EL+ H K ++ + + IW Sbjct: 188 TSLEFNANKQEGGV-----ETIRRIE--GRKALKVLRATADELEAHQKRLELVN-DCIW 238 >gi|188534758|ref|YP_001908555.1| DNA polymerase III subunit epsilon [Erwinia tasmaniensis Et1/99] gi|188029800|emb|CAO97680.1| DNA polymerase III epsilon subunit [Erwinia tasmaniensis Et1/99] Length = 249 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 92/249 (36%), Positives = 141/249 (56%), Gaps = 17/249 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R Sbjct: 1 MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+F+ I +F + N AE + HNA FD+GF++ E ++ + Sbjct: 60 DPEAFGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQR 117 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +I D+L++ARR P RN L++LC RY I S R+ HGALLDS +L++V++ Sbjct: 118 GIAKTDTFCKITDSLAMARRLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231 M G + + F + +R +++ +TV I+ R ++EEL H+ + + Sbjct: 178 TMTGGQTSLAFSME--GERGKQQDGETVHRIAR-PSSGLRVVRASEEELFAHEARLDLVE 234 Query: 232 --GKNAIWD 238 G + +W Sbjct: 235 KKGGSCLWR 243 >gi|26246159|ref|NP_752198.1| DNA polymerase III subunit epsilon [Escherichia coli CFT073] gi|91209283|ref|YP_539269.1| DNA polymerase III subunit epsilon [Escherichia coli UTI89] gi|117622497|ref|YP_851410.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1] gi|227884794|ref|ZP_04002599.1| DNA polymerase III subunit epsilon [Escherichia coli 83972] gi|237707792|ref|ZP_04538273.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA] gi|300900029|ref|ZP_07118226.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1] gi|300936085|ref|ZP_07151027.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1] gi|300988192|ref|ZP_07178593.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1] gi|331656205|ref|ZP_08357167.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206] gi|331681596|ref|ZP_08382232.1| DNA polymerase III, epsilon subunit [Escherichia coli H299] gi|26106556|gb|AAN78742.1|AE016755_242 DNA polymerase III, epsilon chain [Escherichia coli CFT073] gi|91070857|gb|ABE05738.1| DNA polymerase III epsilon chain [Escherichia coli UTI89] gi|115511621|gb|ABI99695.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1] gi|226899002|gb|EEH85261.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA] gi|227838235|gb|EEJ48701.1| DNA polymerase III subunit epsilon [Escherichia coli 83972] gi|300356434|gb|EFJ72304.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1] gi|300407506|gb|EFJ91044.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1] gi|300458760|gb|EFK22253.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1] gi|307552062|gb|ADN44837.1| DNA polymerase III, epsilon chain [Escherichia coli ABU 83972] gi|307628303|gb|ADN72607.1| DNA polymerase III subunit epsilon [Escherichia coli UM146] gi|315289701|gb|EFU49094.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 110-3] gi|315292140|gb|EFU51492.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 153-1] gi|315300178|gb|EFU59415.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 16-3] gi|331054453|gb|EGI26462.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206] gi|331081170|gb|EGI52332.1| DNA polymerase III, epsilon subunit [Escherichia coli H299] Length = 246 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 135/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F E +++ +T + + K T EEL H+ + Q G + + Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|157962223|ref|YP_001502257.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC 700345] gi|157847223|gb|ABV87722.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC 700345] Length = 242 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 132/242 (54%), Gaps = 20/242 (8%) Query: 8 RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG++ RIIEIG VE+++ T R + ++ P + EA+ Sbjct: 9 RQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVVNRRLTGRHYHEYINPQ-QPIDEEAIA 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQRINKDPL 118 +HGIT+EF+ DKP F + F +F + AE +AHNA FDV F++ LQ + Sbjct: 68 VHGITNEFVADKPKFHEVAQSFIEFID--GAEIVAHNANFDVSFMDHEFSMLQPLGPKTA 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D +I+D+L+IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M G Sbjct: 126 DICQILDSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGALLDAEILADVYLLMTGGQ 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 ++ N + ++ + R K + +EL H++ + + K+ + Sbjct: 186 TKFNLSSEKAGQEGGGIQRLSA------DRTKLKVIAASADELIRHEERLDLVAKSGQCL 239 Query: 237 WD 238 W Sbjct: 240 WR 241 >gi|317402511|gb|EFV83078.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54] Length = 240 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 134/240 (55%), Gaps = 15/240 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD + RI+EIG VEL++ T ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPAQGHRIVEIGCVELVNRMATGNNLHIYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F+ + EF F Q AE IAHNA FDV F NAEL + + P+ + + Sbjct: 60 TTEFLSDKPRFAEVADEFVKFI--QGAELIAHNAAFDVKFFNAELAKTGRGPITEYCATV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR P RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 N+ ++ + ++ EL EH+ + L K+ +W + Sbjct: 178 DVDDNDTGAGGGV-----VLARFDASGLPVVKASEAELAEHETYLAALDKSVGGECVWRK 232 >gi|110640430|ref|YP_668158.1| DNA polymerase III subunit epsilon [Escherichia coli 536] gi|300990975|ref|ZP_07179425.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1] gi|306813365|ref|ZP_07447558.1| DNA polymerase III subunit epsilon [Escherichia coli NC101] gi|110342022|gb|ABG68259.1| DNA polymerase III, epsilon chain [Escherichia coli 536] gi|300305641|gb|EFJ60161.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1] gi|305854128|gb|EFM54567.1| DNA polymerase III subunit epsilon [Escherichia coli NC101] gi|324009120|gb|EGB78339.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 57-2] gi|324011829|gb|EGB81048.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 60-1] Length = 246 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 135/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F E +++ +T + + K T EEL H+ + Q G + + Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|260576103|ref|ZP_05844096.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2] gi|259021583|gb|EEW24886.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2] Length = 231 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 92/235 (39%), Positives = 138/235 (58%), Gaps = 6/235 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + RI+EIGA+EL ++ T RTF +L P R EA +HG+ Sbjct: 1 MREIVLDTETTGFEPSEGHRIVEIGALELFNHLPTGRTFHKYLNPE-RSMPKEAFDVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+ KP F ++ EF +F +A + HNA FD+ F+NAEL N L R +D Sbjct: 60 GDDFLRGKPLFRAVAREFLEFIG--DATLVIHNASFDMKFLNAELAAANLPLLPFERALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +AR+K P S L++LC+R+G+ S R KHGALLDS +L++VY++++ GG Q + Sbjct: 118 TVLMARKKFPGSPASLDALCRRFGVDNSGREKHGALLDSEILAEVYLELI-GGRQPDLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++ + +T + R PL +T+EE H + LG +AIW + Sbjct: 177 AQHQSTKSGDTLETF-DWRPRPRSVPLPPGLTQEEAAAHTAFVARLGDDAIWLKR 230 >gi|301021445|ref|ZP_07185469.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1] gi|300398081|gb|EFJ81619.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1] Length = 246 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 90/242 (37%), Positives = 135/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++ARR P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKVTDSLAVARRMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILADVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F E +++ +T + + K T EEL H+ + Q G + + Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|328474397|gb|EGF45202.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329] Length = 240 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 144/239 (60%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ PEA++ Sbjct: 11 RIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQ 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITDEFL DKP ++SI EF DF + AE +AHNA FD GF++ E ++++ Sbjct: 70 VHGITDEFLVDKPEYASIHQEFLDFI--KGAELVAHNASFDTGFMDYEFEKLDPTIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + + F E +T+ I R R T +EL+ H K ++ + + IW Sbjct: 188 TSLEFNANKQEGGV-----ETIRRIE--GRKALKVLRATADELEAHQKRLELVN-DCIW 238 >gi|85707524|ref|ZP_01038599.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius sp. 217] gi|85667957|gb|EAQ22843.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius sp. 217] Length = 231 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 94/235 (40%), Positives = 141/235 (60%), Gaps = 8/235 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL ++ T RTF ++ P R A +HG+ Sbjct: 1 MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQ-RAMPEAAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL++KP F+ I EF DF +A+ + HNA FD+ F+NAEL + L + ID Sbjct: 60 GDDFLRNKPLFAEIAQEFLDFVL--DAKLVIHNAAFDMKFLNAELGWLKLPHLPWEQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR+K P S L++LC+R+ I S R+ HGALLDS +L++VY++++ GG Q +F Sbjct: 118 TLAIARQKFPGSPASLDALCRRFQIDNSARTLHGALLDSEILAEVYLELI-GGRQPDFAL 176 Query: 186 KTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + T P++ R PL R+T+ E H + +G+ A+W + Sbjct: 177 SSTSSTRSSDM--TEPDVWRPHPRPTPLAPRLTESEAAAHQAFVARMGEAALWRK 229 >gi|259909387|ref|YP_002649743.1| DNA polymerase III subunit epsilon [Erwinia pyrifoliae Ep1/96] gi|224965009|emb|CAX56539.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae Ep1/96] gi|283479460|emb|CAY75376.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae DSM 12163] Length = 252 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 140/249 (56%), Gaps = 17/249 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R Sbjct: 1 MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLI 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+F+ I +F + N AE + HNA FD+GF++ E ++ + Sbjct: 60 DPEAFGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQR 117 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +I D+L++AR+ P RN L++LC RY I S R+ HGALLDS +L++V++ Sbjct: 118 GIAKTETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231 M G + + F + +R ++ +T+ I+ R +++EL H+ + + Sbjct: 178 TMTGGQTSLAFSME--GEREKQQGGETIHRIAR-PSSGLRVVRASEQELMAHEARLDLVE 234 Query: 232 --GKNAIWD 238 G + +W Sbjct: 235 KKGGSCLWR 243 >gi|103488315|ref|YP_617876.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis RB2256] gi|98978392|gb|ABF54543.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis RB2256] Length = 231 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 96/232 (41%), Positives = 135/232 (58%), Gaps = 6/232 (2%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTG D +N DR++EIG VEL+D +T TF + P R A +HG+ Sbjct: 1 MREIIFDTETTGFDPRNGDRLVEIGCVELIDRRETGVTFHAYFNPE-RDMPAAAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F++ E DFF +A IAHNA FD GF+NAEL+RI + PLD +R+ Sbjct: 60 SSQFLSDKPLFAARVDELLDFFG--DAPLIAHNAAFDFGFVNAELERIGRPPLDMARMCC 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +AR+ HP +++ L++LC RYGI SHR KHGALLD+ LL+ +YI+M GG QI G Sbjct: 118 TVQMARKLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAHLYIEMT-GGRQIGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 ++ +P + EL H + + L +W Sbjct: 177 ASSSAALPTASLLAARRDPARPFREPRPHMASAAELARHAEFVAGLN-QPLW 227 >gi|298293766|ref|YP_003695705.1| DNA polymerase III subunit epsilon [Starkeya novella DSM 506] gi|296930277|gb|ADH91086.1| DNA polymerase III, epsilon subunit [Starkeya novella DSM 506] Length = 232 Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 102/239 (42%), Positives = 144/239 (60%), Gaps = 8/239 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ DR++EIG VE+ + T +TF V+L P R EA +HG+ Sbjct: 1 MREIVLDTETTGLNPLTGDRLVEIGCVEIFNRIPTGQTFHVYLNPE-RDMPLEAFNVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+++ +F F + HNA FD+GFINAEL R+ + L R++D Sbjct: 60 SAEFLSDKPLFAAVVDDFLAFIA--GDPLVIHNAAFDIGFINAELARLARPALTFDRVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TLS+ARR+HP + N L+ L RYGI S R+KHGALLDS LL+DVY ++ GG Q G Sbjct: 118 TLSLARRRHPGASNRLDDLMNRYGIDGSRRTKHGALLDSELLADVYAEL-CGGRQTALGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 E E+++ + L+R +PL R+ ++ H+ + TLG +AIW Y + Sbjct: 177 TVVETTVVLAERQSA---APLQRPRPLAPRLDAAQVATHEAFVATLGDSAIWKDYAAGE 232 >gi|300024773|ref|YP_003757384.1| DNA polymerase III subunit epsilon [Hyphomicrobium denitrificans ATCC 51888] gi|299526594|gb|ADJ25063.1| DNA polymerase III, epsilon subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 237 Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 98/238 (41%), Positives = 148/238 (62%), Gaps = 5/238 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD K DR+IEIG +E+++ T F F+ P R EA +HGI Sbjct: 1 MREIVLDTETTGLDPKTGDRLIEIGGIEIINRIPTGVEFHRFINPE-RNVPMEAQNVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL KP F ++ +F F + + HNA+FDV F+N EL + + PL R++D Sbjct: 60 STEFLIGKPLFREVYRDFLAFIGDD--ILVIHNAQFDVNFLNHELGLVGEKPLSFDRVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++ARR+HP+ N L++LCKRYGI S R+KHGA++DS LL++VY++++ G Q FG Sbjct: 118 TLALARRRHPAGPNSLDALCKRYGIDTSQRTKHGAIVDSLLLAEVYVELL-GERQATFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 +T E++ + +R +PL +R+T+ +L H I+ +G AIW+R+ + Sbjct: 177 QTIGSGAATSERRNGKRAAAKQRPEPLPSRLTEADLVAHRSFIEKMGAKAIWNRFWGA 234 >gi|194290095|ref|YP_002006002.1| DNA polymerase III subunit epsilon [Cupriavidus taiwanensis LMG 19424] gi|193223930|emb|CAQ69939.1| DNA polymerase III epsilon subunit [Cupriavidus taiwanensis LMG 19424] Length = 246 Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 92/238 (38%), Positives = 132/238 (55%), Gaps = 15/238 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R ++ P R A+ +HGI Sbjct: 4 MRQIVLDTETTGLNAATGDRLIEIGCVELMNRRLTGRHLHFYVNPE-RDIDEGAIAVHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + + +F Q+AE I HNA+FD+GF++ E Q + P + Sbjct: 63 TVEFLADKPRFAEVVHDIREFV--QDAELIIHNAQFDLGFLDMEFQLLGLPPFRQHVGNV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL AR+ P RN L++LC+R GI+ +HR HGALLD+ LL++VY+ M G Q + Sbjct: 121 IDTLREARQMFPGKRNSLDALCERLGISNAHRKLHGALLDAELLAEVYLAMTRG--QDSL 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237 T + ++ T ++S L R T EE H ++ L G +W Sbjct: 179 VIDTLDGGSGQDGVVTTADLSRLTLP---VLRATDEEQQAHLALLKGLDKASGGKTVW 233 >gi|161170263|gb|ABX59233.1| polymerase III epsilon subunit uncultured proteobacterium [uncultured marine bacterium EB000_55B11] gi|297183792|gb|ADI19915.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 230 Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 98/234 (41%), Positives = 147/234 (62%), Gaps = 7/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV+D ETTG D DRI+EIGAVEL + T R + ++ P R P A ++HG+ Sbjct: 1 MREIVWDTETTGFDPFAGDRIVEIGAVELNQHLPTGRVYHQYINPE-RDMPPGAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FLKD P FS+I +F DF +A IAHNAKFD+ FINAEL+ N + ++ +D Sbjct: 60 SIDFLKDFPVFSNIARDFIDFVG--DATLIAHNAKFDMKFINAELKNANLPQVPLNQSLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR+K P ++N L++LC+R+ I S R KHGALLDS +L++VY++++ GG Q +F Sbjct: 118 TLEIARKKFPGAQNSLDALCRRFNIDNSSRQKHGALLDSEILAEVYLELV-GGRQPDFSL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + + L R K L + +T E H+ I++LG +A+W++ Sbjct: 177 SLVGQSKLESTSDS--SYAALSRPKKLNSLVTDVEKKAHNDFIKSLGTSAVWNK 228 >gi|53718980|ref|YP_107966.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei K96243] gi|53725133|ref|YP_102525.1| DNA polymerase III subunit epsilon [Burkholderia mallei ATCC 23344] gi|126449393|ref|YP_001080124.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10247] gi|167719045|ref|ZP_02402281.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei DM98] gi|167738046|ref|ZP_02410820.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 14] gi|167815230|ref|ZP_02446910.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 91] gi|167823638|ref|ZP_02455109.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 9] gi|167845182|ref|ZP_02470690.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei B7210] gi|167893733|ref|ZP_02481135.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 7894] gi|167902185|ref|ZP_02489390.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei NCTC 13177] gi|167910426|ref|ZP_02497517.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 112] gi|167918451|ref|ZP_02505542.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei BCC215] gi|254188362|ref|ZP_04894873.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pasteur 52237] gi|52209394|emb|CAH35339.1| DNA polymerase III, epsilon chain [Burkholderia pseudomallei K96243] gi|52428556|gb|AAU49149.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC 23344] gi|126242263|gb|ABO05356.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC 10247] gi|157936041|gb|EDO91711.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei Pasteur 52237] Length = 240 Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 134/240 (55%), Gaps = 13/240 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VELL+ T + ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ I DF ++AE I HNA FD+GF++AE + + + Sbjct: 60 TTEFLSDKPKFAEIVDPLRDFV--RDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 ++ P ++ D P+ T EL H+ + L K+ +W + Sbjct: 176 VIDMLDEAGDAHRNGDAPRMAFSGLDLPVLA-ATDAELAAHEAQLDALDKSAKGVCVWRK 234 >gi|251792047|ref|YP_003006767.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus NJ8700] gi|247533434|gb|ACS96680.1| DNA polymerase III, epsilon subunit [Aggregatibacter aphrophilus NJ8700] Length = 254 Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 94/251 (37%), Positives = 146/251 (58%), Gaps = 18/251 (7%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 I+ ++ R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 3 IQTHQNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPVD 61 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA+K+HGITDE L DKP FS I +EF ++ + AE + HNA FDVGF++ E +++N Sbjct: 62 PEAIKVHGITDEMLADKPDFSQIANEFIEYI--KGAELLIHNAPFDVGFMDYEFRKLNLP 119 Query: 117 PL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D + DTL +AR+ +P +N+L++LC R I S R+ HGALLD+ +L+DVY+ M Sbjct: 120 IKTNDICTVTDTLVMARQMYPGKKNNLDALCSRLDIDNSKRTLHGALLDAEILADVYLAM 179 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGK 233 G + + F +E ++ S + + L T+EEL+ H + ++ + K Sbjct: 180 TGGQTSL---FDESEQDVIQQAVTHHQVKSAVTFSRNLRLLTPTEEELEAHLEYLKLINK 236 Query: 234 ----NAIWDRY 240 N +WDR Sbjct: 237 KSKENCLWDRR 247 >gi|30061767|ref|NP_835938.1| DNA polymerase III subunit epsilon [Shigella flexneri 2a str. 2457T] gi|56479626|ref|NP_706156.2| DNA polymerase III subunit epsilon [Shigella flexneri 2a str. 301] gi|218547665|ref|YP_002381456.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ATCC 35469] gi|30040009|gb|AAP15743.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 2457T] gi|56383177|gb|AAN41863.2| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 301] gi|218355206|emb|CAQ87813.1| DNA polymerase III epsilon subunit [Escherichia fergusonii ATCC 35469] gi|313646728|gb|EFS11187.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 2457T] gi|332754119|gb|EGJ84489.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2747-71] gi|332761998|gb|EGJ92270.1| DNA polymerase III, epsilon subunit [Shigella flexneri 4343-70] gi|332764639|gb|EGJ94869.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-671] gi|332768614|gb|EGJ98795.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2930-71] gi|333009688|gb|EGK29138.1| DNA polymerase III, epsilon subunit [Shigella flexneri VA-6] gi|333010755|gb|EGK30181.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-272] gi|333021254|gb|EGK40507.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-227] gi|333022178|gb|EGK41418.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-304] Length = 243 Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + T+ I + + K T EEL H+ + Q G + + Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|309972740|gb|ADO95941.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2846] Length = 255 Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 93/257 (36%), Positives = 142/257 (55%), Gaps = 18/257 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTL 231 M G + + + ++KT I + T +EL H + ++ + Sbjct: 176 MTGGQTNLFDEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMM 235 Query: 232 GK----NAIWDRYISSN 244 K N +W++ +N Sbjct: 236 NKKSGNNCLWEKRFGNN 252 >gi|310766705|gb|ADP11655.1| DNA polymerase III subunit epsilon [Erwinia sp. Ejp617] Length = 252 Score = 237 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 141/249 (56%), Gaps = 17/249 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R Sbjct: 1 MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLI 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+F+ I +F + N AE + HNA FD+GF++ E ++ + Sbjct: 60 DPEAFGVHGIADEFLLDKPTFAQIADDFLAYIN--GAELVIHNASFDIGFMDYEFAKLQR 117 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +I D+L++AR+ P RN L++LC RY I S R+ HGALLDS +L++V++ Sbjct: 118 GIAKTETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231 M G + + F + +R +++ +T+ I+ R +++EL H+ + + Sbjct: 178 TMTGGQTSLAFSME--GEREKQQDGETIHRIAR-PSSGLRVVRASEQELMAHEARLDLVE 234 Query: 232 --GKNAIWD 238 G + +W Sbjct: 235 KKGGSCLWR 243 >gi|332535809|ref|ZP_08411542.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332034787|gb|EGI71325.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 237 Score = 237 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 90/238 (37%), Positives = 139/238 (58%), Gaps = 13/238 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+D K RIIEIG VEL++ T F V++ P R + EA+ +HGIT Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RPSEEEAIDVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SRI 123 +EFL+DKP F I EF+D+ + AE + HNA FDVG ++ E +N+ ++ Sbjct: 63 NEFLRDKPLFHQIAQEFFDYI--EGAELVIHNAPFDVGHMDNEFALLNQGYPKTETFCQV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR HP +N+L++LC+RY + + R+ HGALLDS +L+DVY+ M G +++N Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYLAMTGGQTKLN- 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238 N+D +++K + ++ R + R + E H+ + + G IW Sbjct: 180 -LNQNKDDGSEQQKGGIKRLN-SDRAPLVVLRASDTEQSAHEARLDLVNKEGGQCIWR 235 >gi|170683943|ref|YP_001742338.1| DNA polymerase III subunit epsilon [Escherichia coli SMS-3-5] gi|331651120|ref|ZP_08352145.1| DNA polymerase III, epsilon subunit [Escherichia coli M718] gi|331671744|ref|ZP_08372540.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280] gi|170521661|gb|ACB19839.1| DNA polymerase III, epsilon subunit [Escherichia coli SMS-3-5] gi|281599565|gb|ADA72549.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2002017] gi|324111223|gb|EGC05206.1| DNA polymerase III [Escherichia fergusonii B253] gi|325496141|gb|EGC94000.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ECD227] gi|331050861|gb|EGI22913.1| DNA polymerase III, epsilon subunit [Escherichia coli M718] gi|331070733|gb|EGI42092.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280] Length = 246 Score = 237 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + T+ I + + K T EEL H+ + Q G + + Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|254786149|ref|YP_003073578.1| DNA polymerase III subunit epsilon [Teredinibacter turnerae T7901] gi|237685417|gb|ACR12681.1| DNA polymerase III, epsilon subunit [Teredinibacter turnerae T7901] Length = 239 Score = 237 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 140/241 (58%), Gaps = 13/241 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VEL + T + F ++ P+ R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEPEQGHRIIEIGCVELFNRKLTGKHFHQYIRPD-REIDEGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122 T+EFL DKP F+ I +F F +AE + HNA FDVGF++ EL+ +N+ Sbjct: 60 TNEFLADKPVFAQIADDFLTFIG--DAELVIHNAPFDVGFLDHELRLLNRGLAPIRERCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL ARRKHP +N+L++LCKRY + S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 VLDTLVYARRKHPGQKNNLDALCKRYMVDNSQRDLHGALLDAEILADVYLAMTGGQTALA 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 G + + E++ + + R + R EE++ H + TL G N +W Sbjct: 178 LGGQQGDGSGGDGEEQIIRLSA--DRPRLKVLRANDEEIEAHKAKLATLDKASGGNCLWL 235 Query: 239 R 239 + Sbjct: 236 Q 236 >gi|229845439|ref|ZP_04465569.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1] gi|229811635|gb|EEP47334.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1] Length = 256 Score = 237 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 94/258 (36%), Positives = 145/258 (56%), Gaps = 19/258 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F I +F D+ N AE + HNA FDVGF++ E ++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKEIAQDFLDYIN--GAELLIHNAPFDVGFMDYEFCKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQINFGFKTNED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G + + ++ E R +E+ ++ + T +EL H + ++ Sbjct: 176 MTGGQTNLFDAEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTDDELQAHLELLKM 235 Query: 231 LGK----NAIWDRYISSN 244 + K N +WD+ ++ Sbjct: 236 INKKSGNNCLWDKRFGND 253 >gi|254419681|ref|ZP_05033405.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3] gi|196185858|gb|EDX80834.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3] Length = 241 Score = 237 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 132/235 (56%), Gaps = 7/235 (2%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG D K DR+IE+G +E+ D T RTF F+ P R P+A+++HGIT Sbjct: 3 REIVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPE-RLIPPDAIRVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +KD P F I + +F +A IAHNA FD FI+ E + + +R IDT Sbjct: 62 DDKVKDAPKFHEIADDLIEFIG--DAPMIAHNAGFDRNFIDFEYKLCGRPITGETRWIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +A+ + P N L++LCKR+ +++ R+ HGAL+D+ LL++VY+++ GG + Sbjct: 120 LKLAQARFPGMPNSLDALCKRFKVSLVERTLHGALIDARLLAEVYLEL-RGGKERVLDL- 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKNAIWDRY 240 ++ + VP + R +PL R + EE H + L A+W+ Y Sbjct: 178 SSAPVAGRSAGVAVPTAAYGPRPQPLALRSSPEEQAAHIAFLAKALKDRALWEAY 232 >gi|333008996|gb|EGK28455.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-218] Length = 243 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAVFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + T+ I + + K T EEL H+ + Q G + + Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|110804261|ref|YP_687782.1| DNA polymerase III subunit epsilon [Shigella flexneri 5 str. 8401] gi|110613809|gb|ABF02476.1| DNA polymerase III, epsilon subunit [Shigella flexneri 5 str. 8401] Length = 246 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 136/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L +AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLVVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + T+ I + + K T EEL H+ + Q G + + Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|323975918|gb|EGB71013.1| DNA polymerase III [Escherichia coli TW10509] Length = 243 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 135/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF ++ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F E +++ +T + + K T EEL H+ + Q G + + Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|332186931|ref|ZP_08388672.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17] gi|332012941|gb|EGI55005.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. S17] Length = 232 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 101/233 (43%), Positives = 140/233 (60%), Gaps = 9/233 (3%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTG S+ DR++EIG VEL++ +T RT+ + P R EA +HG+ Sbjct: 1 MREIVFDTETTGFKFSEGDRLVEIGCVELVNRVETGRTYHAYFNPE-RSMPAEAQAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRII 124 +D FLKDKP F+ +EF DF +A IAHNA FD GFIN EL + + +R++ Sbjct: 60 SDAFLKDKPVFAEGVAEFLDFIG--DAPLIAHNATFDFGFINGELGALGFPHVCEKTRMV 117 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL+IAR KHP +++ L++LC RYGI SHR HGALLD+ LL+ VY+++M GG QI G Sbjct: 118 DTLAIARSKHPGAKHTLDALCSRYGIDRSHRVLHGALLDAQLLAQVYVELM-GGRQIGLG 176 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 +D + TV + R P R + EL H ++ + + IW Sbjct: 177 L-LADDAGQGTQTITVTRAPAIVRP-PRVFRPSDAELAAHAAFLKGIA-DPIW 226 >gi|283834499|ref|ZP_06354240.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC 29220] gi|291070049|gb|EFE08158.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC 29220] Length = 245 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 138/242 (57%), Gaps = 18/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQVVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++ +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFLDYI--RGAELVIHNASFDIGFMDYEFAKLKRDIPKTNE 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + +++ T + + K T EEL H+ + Q G + + Sbjct: 187 TMAFSMEGDS----QQQNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQKKGGSCL 242 Query: 237 WD 238 W Sbjct: 243 WR 244 >gi|15799891|ref|NP_285903.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 EDL933] gi|15829465|ref|NP_308238.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. Sakai] gi|82775601|ref|YP_401948.1| DNA polymerase III subunit epsilon [Shigella dysenteriae Sd197] gi|168750163|ref|ZP_02775185.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4113] gi|168757208|ref|ZP_02782215.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4401] gi|168763423|ref|ZP_02788430.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4501] gi|168776181|ref|ZP_02801188.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4196] gi|168782940|ref|ZP_02807947.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4076] gi|168789658|ref|ZP_02814665.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC869] gi|168800383|ref|ZP_02825390.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC508] gi|189403362|ref|ZP_02794985.2| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4486] gi|208809432|ref|ZP_03251769.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4206] gi|208813334|ref|ZP_03254663.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4045] gi|208818379|ref|ZP_03258699.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4042] gi|209400894|ref|YP_002268818.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4115] gi|254791342|ref|YP_003076179.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. TW14359] gi|261223754|ref|ZP_05938035.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261255836|ref|ZP_05948369.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. FRIK966] gi|291281032|ref|YP_003497850.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str. CB9615] gi|293413470|ref|ZP_06656119.1| DNA polymerase III [Escherichia coli B185] gi|309787110|ref|ZP_07681722.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617] gi|12512943|gb|AAG54511.1|AE005196_9 DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EDL933] gi|13359667|dbj|BAB33634.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. Sakai] gi|81239749|gb|ABB60459.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae Sd197] gi|187768434|gb|EDU32278.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4196] gi|188015573|gb|EDU53695.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4113] gi|188999632|gb|EDU68618.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4076] gi|189355702|gb|EDU74121.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4401] gi|189361034|gb|EDU79453.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4486] gi|189366358|gb|EDU84774.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4501] gi|189370736|gb|EDU89152.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC869] gi|189377309|gb|EDU95725.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC508] gi|208729233|gb|EDZ78834.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4206] gi|208734611|gb|EDZ83298.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4045] gi|208738502|gb|EDZ86184.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4042] gi|209162294|gb|ACI39727.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. EC4115] gi|209745474|gb|ACI71044.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745476|gb|ACI71045.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745478|gb|ACI71046.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745480|gb|ACI71047.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|209745482|gb|ACI71048.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|254590742|gb|ACT70103.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. TW14359] gi|290760905|gb|ADD54866.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str. CB9615] gi|291433528|gb|EFF06501.1| DNA polymerase III [Escherichia coli B185] gi|308924688|gb|EFP70183.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617] gi|320190264|gb|EFW64914.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. EC1212] gi|320650355|gb|EFX18832.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. H 2687] gi|320665449|gb|EFX32511.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. LSU-61] gi|326338809|gb|EGD62628.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. 1044] gi|326342399|gb|EGD66179.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str. 1125] Length = 243 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 134/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F E +++ + + + K T EEL H+ + Q G + + Sbjct: 184 SMAFAM---EGETQQQQGEATIQRLVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|293603370|ref|ZP_06685798.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter piechaudii ATCC 43553] gi|292818280|gb|EFF77333.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter piechaudii ATCC 43553] Length = 239 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 133/240 (55%), Gaps = 15/240 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD + RI+EIG VE+++ T ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPAQGHRIVEIGCVEMVNRMSTGNNLHIYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F+ + EF F Q AE IAHNA FDV F NAEL + + P+ + Sbjct: 60 TTEFLSDKPRFADVVDEFVKFI--QGAELIAHNAAFDVKFFNAELAKTGRGPITEYCETV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR P RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 N+ ++ + + +EL EH+ + L K+ +W + Sbjct: 178 DVDDNDGAGSDGIV-----LAKFDASGLVVIKAADDELAEHEAYLAALDKSVGGECVWRK 232 >gi|209883542|ref|YP_002287399.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans OM5] gi|209871738|gb|ACI91534.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans OM5] Length = 230 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 99/239 (41%), Positives = 146/239 (61%), Gaps = 10/239 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD+ + DR++EIG VE+ ++ T +T+ V++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDALRGDRLVEIGCVEMFNHMPTGQTYHVYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+++ EF +F +A I HNA FD+GFIN EL R+ + + R++D Sbjct: 60 STEFLADKPLFAAVADEFLEFIG--DAPLIIHNASFDIGFINMELDRLKRAAIPCERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ G Q + Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLI-GARQSSLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 E + V ++ R+ PL +RIT EE + H + TLG + +W + ++ Sbjct: 177 AETE-----RTQIHVVEVTRRVREVPLASRITVEEREAHRAFVATLGDHPLWAEFKDAD 230 >gi|195938587|ref|ZP_03083969.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. EC4024] gi|217324145|ref|ZP_03440229.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. TW14588] gi|217320366|gb|EEC28790.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str. TW14588] gi|320638235|gb|EFX07963.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str. G5101] gi|320643619|gb|EFX12763.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. 493-89] gi|320654630|gb|EFX22631.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660198|gb|EFX27708.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str. USDA 5905] Length = 246 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 134/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F E +++ + + + K T EEL H+ + Q G + + Sbjct: 187 SMAFAM---EGETQQQQGEATIQRLVRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|197284137|ref|YP_002150009.1| DNA polymerase III subunit epsilon [Proteus mirabilis HI4320] gi|194681624|emb|CAR40653.1| DNA polymerase III, epsilon subunit [Proteus mirabilis HI4320] Length = 252 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 94/251 (37%), Positives = 147/251 (58%), Gaps = 21/251 (8%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119 HGI+DEFL+D PSF+ I EF + + AE I HNA FD+GF++ E Q++N+D Sbjct: 66 HGISDEFLEDCPSFAEIADEFLAYI--RGAELIIHNASFDIGFMDYEFQKLNRDIPLTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR P RN+L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCQITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTGGQT 183 Query: 180 QINFGF--KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKN 234 + F ++NE++ + ++ V + L+ + + EEL H+ + + G + Sbjct: 184 ALAFSMEGESNEEQKGDDIQRIVRPVRGLR-----VIKASAEELVAHEARLDLVVKKGGH 238 Query: 235 AIWDRYISSNQ 245 +W +SN Sbjct: 239 CLWRPAPASND 249 >gi|114798147|ref|YP_758739.1| DNA polymerase III subunit epsilon [Hyphomonas neptunium ATCC 15444] gi|114738321|gb|ABI76446.1| DNA polymerase III, epsilon subunit [Hyphomonas neptunium ATCC 15444] Length = 232 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 90/239 (37%), Positives = 142/239 (59%), Gaps = 13/239 (5%) Query: 3 RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++R+I FD ETTGL+ + DRIIEIGAVE++++ T +TF+ + P G S ++ Sbjct: 1 MTERVREIAFDTETTGLNPNEGDRIIEIGAVEMINHIPTGKTFRRLINP-GMAVSEATIR 59 Query: 62 LHGITDEFLKDKPSFS--SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + GITD+ L+DKP F I F +F +A +AHNA FD GF+N ELQR +D + Sbjct: 60 ITGITDDHLRDKPPFEHPDIIDAFLEF--TGDAIIVAHNASFDRGFLNMELQRCGRDIIP 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R +DT+ +AR+++P + L++LCKR+ I++ R+ HGALLDS LL+ VY++++ GG Sbjct: 118 EDRWVDTVQMARKRYPGAPASLDALCKRFDISLESRTFHGALLDSQLLASVYLELL-GGR 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 F F+ + + +R PL + +T E H + ++ LG +A+W Sbjct: 177 ARAFSFEPTL------GGEGYQRPAARQRPAPLASLVTDAERAAHAELVEKLGADALWK 229 >gi|27479696|gb|AAO17223.1| DnaQ [Photorhabdus luminescens] Length = 248 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 91/249 (36%), Positives = 142/249 (57%), Gaps = 19/249 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA ++ Sbjct: 7 RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYIQPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL+DKP F+ + EF +F + AE I HNA FD+GFI+ E ++++D Sbjct: 66 HGISDEFLQDKPLFADVADEFVEFI--RGAELIIHNAPFDIGFIDYEFGKLDRDIPPTAD 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR P RN+L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLDAEILADVYLIMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + + + ++ + + T EEL H+ + + G + + Sbjct: 184 SLAFSME--GEIAGGANVSEIQRVTRSQTALKVVY-ATDEELAAHESRLDLVEKKGGSCL 240 Query: 237 WDRYISSNQ 245 W ISS Q Sbjct: 241 WR--ISSEQ 247 >gi|331661586|ref|ZP_08362509.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143] gi|284919985|emb|CBG33040.1| DNA polymerase III epsilon subunit [Escherichia coli 042] gi|331060008|gb|EGI31972.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143] Length = 246 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 136/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPE-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF ++ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + T+ I + + K T EEL H+ + Q G + + Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|281177435|dbj|BAI53765.1| DNA polymerase III epsilon subunit [Escherichia coli SE15] gi|330910061|gb|EGH38571.1| DNA polymerase 3 epsilon subunit [Escherichia coli AA86] Length = 243 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 134/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F E +++ +T + + K T EEL H+ + Q G + Sbjct: 184 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|238784821|ref|ZP_04628822.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970] gi|238714237|gb|EEQ06248.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970] Length = 259 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 90/248 (36%), Positives = 138/248 (55%), Gaps = 17/248 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+F+ I EF +F + AE I HNA FD+GF++ E + + +D Sbjct: 71 HGISDEFLADKPTFADIAPEFLEFI--RGAELIIHNAAFDIGFMDHEFRMLQQDIPKTET 128 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +LS+VY+ M G + Sbjct: 129 FCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILSEVYLAMTGGQT 188 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + D+ + + I+ ++EL H+ + + G + + Sbjct: 189 SLTFSME--GDQSQNDSSDDIQRITR-PASGLKIIYAAEDELAAHESRLDLVMKKGGSCL 245 Query: 237 WDRYISSN 244 W + S Sbjct: 246 WRMPLESE 253 >gi|188494951|ref|ZP_03002221.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638] gi|194438247|ref|ZP_03070339.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1] gi|254160329|ref|YP_003043437.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606] gi|312970313|ref|ZP_07784494.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70] gi|188490150|gb|EDU65253.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638] gi|194422911|gb|EDX38906.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1] gi|242376045|emb|CAQ30730.1| DNA polymerase III, epsilon subunit, subunit of DNA polymerase III, core enzyme and DNA polymerase III, holoenzyme [Escherichia coli BL21(DE3)] gi|253972230|gb|ACT37901.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606] gi|253976439|gb|ACT42109.1| DNA polymerase III subunit epsilon [Escherichia coli BL21(DE3)] gi|309700417|emb|CBI99706.1| DNA polymerase III epsilon subunit [Escherichia coli ETEC H10407] gi|310336962|gb|EFQ02100.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70] Length = 243 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + T+ I + + K T +EL H+ + Q G + + Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDDELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|120599049|ref|YP_963623.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1] gi|146292880|ref|YP_001183304.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32] gi|120559142|gb|ABM25069.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1] gi|145564570|gb|ABP75505.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32] gi|319426198|gb|ADV54272.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200] Length = 242 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 90/248 (36%), Positives = 134/248 (54%), Gaps = 20/248 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+IV D ETTG++ RIIEIG VE+++ T R F ++ P G+ Sbjct: 3 IISNASRQIVLDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 PEA+ +HGITDE + ++P F I +F +F + AE +AHNA FDV F++ E + Sbjct: 62 DPEAIAVHGITDERVANEPRFHQIAQQFIEFID--GAEIVAHNANFDVSFMDHEFSMLPS 119 Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +D I+DTL IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 KGPKTMDICDILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G ++ N + ++ PN LK + +EL H++ + + Sbjct: 180 IMTGGQTKFNLSNEEVGQEAGG-IQRFAPNSLNLK-----VISASADELAMHEQRLDLVA 233 Query: 233 K--NAIWD 238 K +W Sbjct: 234 KSGKCLWR 241 >gi|296444995|ref|ZP_06886956.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium OB3b] gi|296257416|gb|EFH04482.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium OB3b] Length = 242 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 102/239 (42%), Positives = 147/239 (61%), Gaps = 9/239 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD K RI+EIGAVE+ + T RTF +L P R EA ++HG+ Sbjct: 1 MREIVFDTETTGLDPAKGHRIVEIGAVEISNLIPTGRTFHFYLDPE-RDMPEEAFRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL + F I F +F +A+ +AHNA+FD+ F+NAEL + + + R++D Sbjct: 60 STAFLTGQKKFREIAEAFLEFVA--DAQLVAHNAEFDMRFVNAELAMLGLEAIAADRVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IARR HP + N L++LC+RYG+ S R KHGALLDS+LL++VY ++M GG Q Sbjct: 118 TLTIARRLHPGAANSLDALCQRYGVDSSRRDKHGALLDSYLLAEVYAELM-GGRQSALVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 +T+ ++ + L R PL R+ +EE+ H++ TLGK IW RY++ Sbjct: 177 QTSVAAAAQDLGADL----LRSRPAPLAPRLAEEEIAAHERFAATLGKAPIWSRYLTPE 231 >gi|134095496|ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans] gi|133739399|emb|CAL62449.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans] Length = 234 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 135/239 (56%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + DRIIEIG VEL+D T F ++ P R + AL +HG+ Sbjct: 1 MRQIVLDTETTGLNPRSGDRIIEIGCVELIDRRLTGNNFHHYINPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ I EF D+ + AE + HNA FDVGF++AEL+R+ I Sbjct: 60 TTEFLSDKPKFAEIVDEFRDYIS--GAEVVIHNAPFDVGFLDAELKRVEMPLFKDHVGGI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL A+ HP RN L++LC RYG++ +HR+ HGALLD+ LL++VY+ M G + ++ Sbjct: 118 LDTLQQAKELHPGKRNSLDALCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + + V + L T EEL EH+ +Q+L K +W Sbjct: 178 DLGGQDADSDGIALEVVAIADI------LLQPATAEELAEHELLMQSLDKEVKGQCLWR 230 >gi|331645384|ref|ZP_08346488.1| DNA polymerase III, epsilon subunit [Escherichia coli M605] gi|331045546|gb|EGI17672.1| DNA polymerase III, epsilon subunit [Escherichia coli M605] Length = 246 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 134/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F E +++ +T + + K T EEL H+ + Q G + Sbjct: 187 SMAFAM---EGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|238759160|ref|ZP_04620328.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236] gi|238702576|gb|EEP95125.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236] Length = 259 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 89/255 (34%), Positives = 142/255 (55%), Gaps = 17/255 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R Sbjct: 6 MQVTPTRQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVD 64 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA +HGI+DEFL DKPSF+ I EF +F + AE + HNA FD+GF++ E + + +D Sbjct: 65 PEAYGVHGISDEFLADKPSFADITPEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 122 Query: 117 PLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ Sbjct: 123 IPKTETFCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLA 182 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-- 231 M G + ++F + D+ + + + I+ ++EL H+ + + Sbjct: 183 MTGGQTSLSFSME--GDQSQNDSSEDIQRITR-PASALKIIYAAEDELLAHESRLDLVMK 239 Query: 232 -GKNAIWDRYISSNQ 245 G + +W + S Sbjct: 240 KGGSCLWRMPLESED 254 >gi|74310830|ref|YP_309249.1| DNA polymerase III subunit epsilon [Shigella sonnei Ss046] gi|82542808|ref|YP_406755.1| DNA polymerase III subunit epsilon [Shigella boydii Sb227] gi|157156660|ref|YP_001461381.1| DNA polymerase III subunit epsilon [Escherichia coli E24377A] gi|157159676|ref|YP_001456994.1| DNA polymerase III subunit epsilon [Escherichia coli HS] gi|187734104|ref|YP_001879012.1| DNA polymerase III subunit epsilon [Shigella boydii CDC 3083-94] gi|191167032|ref|ZP_03028854.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A] gi|193067693|ref|ZP_03048660.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019] gi|194427534|ref|ZP_03060082.1| DNA polymerase III, epsilon subunit [Escherichia coli B171] gi|194432694|ref|ZP_03064979.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012] gi|209917402|ref|YP_002291486.1| DNA polymerase III subunit epsilon [Escherichia coli SE11] gi|218552790|ref|YP_002385703.1| DNA polymerase III subunit epsilon [Escherichia coli IAI1] gi|218693677|ref|YP_002401344.1| DNA polymerase III subunit epsilon [Escherichia coli 55989] gi|260842441|ref|YP_003220219.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2 str. 12009] gi|260853420|ref|YP_003227311.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11 str. 11368] gi|260866358|ref|YP_003232760.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H- str. 11128] gi|293418309|ref|ZP_06660744.1| DNA polymerase III [Escherichia coli B088] gi|332281343|ref|ZP_08393756.1| DNA polymerase III epsilon subunit [Shigella sp. D9] gi|73854307|gb|AAZ87014.1| DNA polymerase III epsilon subunit [Shigella sonnei Ss046] gi|81244219|gb|ABB64927.1| DNA polymerase III epsilon subunit [Shigella boydii Sb227] gi|157065356|gb|ABV04611.1| DNA polymerase III, epsilon subunit [Escherichia coli HS] gi|157078690|gb|ABV18398.1| DNA polymerase III, epsilon subunit [Escherichia coli E24377A] gi|187431096|gb|ACD10370.1| DNA polymerase III, epsilon subunit [Shigella boydii CDC 3083-94] gi|190902925|gb|EDV62652.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A] gi|192959105|gb|EDV89541.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019] gi|194414304|gb|EDX30578.1| DNA polymerase III, epsilon subunit [Escherichia coli B171] gi|194418956|gb|EDX35040.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012] gi|209910661|dbj|BAG75735.1| DNA polymerase III epsilon subunit [Escherichia coli SE11] gi|218350409|emb|CAU96094.1| DNA polymerase III epsilon subunit [Escherichia coli 55989] gi|218359558|emb|CAQ97098.1| DNA polymerase III epsilon subunit [Escherichia coli IAI1] gi|257752069|dbj|BAI23571.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11 str. 11368] gi|257757588|dbj|BAI29085.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2 str. 12009] gi|257762714|dbj|BAI34209.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H- str. 11128] gi|291324837|gb|EFE64252.1| DNA polymerase III [Escherichia coli B088] gi|320186397|gb|EFW61129.1| DNA polymerase III epsilon subunit [Shigella flexneri CDC 796-83] gi|320201190|gb|EFW75773.1| DNA polymerase III epsilon subunit [Escherichia coli EC4100B] gi|323160256|gb|EFZ46213.1| DNA polymerase III, epsilon subunit [Escherichia coli E128010] gi|323165914|gb|EFZ51696.1| DNA polymerase III, epsilon subunit [Shigella sonnei 53G] gi|323171002|gb|EFZ56651.1| DNA polymerase III, epsilon subunit [Escherichia coli LT-68] gi|323176527|gb|EFZ62119.1| DNA polymerase III, epsilon subunit [Escherichia coli 1180] gi|323181627|gb|EFZ67042.1| DNA polymerase III, epsilon subunit [Escherichia coli 1357] gi|324115459|gb|EGC09401.1| DNA polymerase III [Escherichia coli E1167] gi|332093741|gb|EGI98796.1| DNA polymerase III, epsilon subunit [Shigella boydii 3594-74] gi|332095033|gb|EGJ00068.1| DNA polymerase III, epsilon subunit [Shigella boydii 5216-82] gi|332097572|gb|EGJ02551.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 155-74] gi|332103695|gb|EGJ07041.1| DNA polymerase III epsilon subunit [Shigella sp. D9] Length = 243 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + + ++ + T+ I + + K T EEL H+ + + G + + Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVEKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|238794443|ref|ZP_04638053.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909] gi|238726238|gb|EEQ17782.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909] Length = 259 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 89/255 (34%), Positives = 143/255 (56%), Gaps = 17/255 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R Sbjct: 6 MQVTPTRQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVD 64 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA +HGI+DEFL DKP+F+ I EF DF + AE + HNA FD+GF++ E + + +D Sbjct: 65 PEAYGVHGISDEFLADKPTFADITPEFLDFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 122 Query: 117 PLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ Sbjct: 123 IPKTETFCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLA 182 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-- 231 M G + ++F + D+ + + + I+ + ++EL H+ + + Sbjct: 183 MTGGQTSLSFSME--GDQSQNDSSEDIQRITR-PASELKIIYAAEDELLAHESRLDLVMK 239 Query: 232 -GKNAIWDRYISSNQ 245 G + +W + S Sbjct: 240 KGGSCLWRMPLESED 254 >gi|193063208|ref|ZP_03044299.1| DNA polymerase III, epsilon subunit [Escherichia coli E22] gi|256020181|ref|ZP_05434046.1| DNA polymerase III subunit epsilon [Shigella sp. D9] gi|300819828|ref|ZP_07100014.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1] gi|300823399|ref|ZP_07103529.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7] gi|300926565|ref|ZP_07142351.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1] gi|301326098|ref|ZP_07219494.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1] gi|307314695|ref|ZP_07594293.1| DNA polymerase III, epsilon subunit [Escherichia coli W] gi|309797929|ref|ZP_07692309.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7] gi|331666456|ref|ZP_08367336.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271] gi|331675873|ref|ZP_08376590.1| DNA polymerase III, epsilon subunit [Escherichia coli H591] gi|192931116|gb|EDV83719.1| DNA polymerase III, epsilon subunit [Escherichia coli E22] gi|300417423|gb|EFK00734.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1] gi|300524017|gb|EFK45086.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7] gi|300527586|gb|EFK48648.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1] gi|300847158|gb|EFK74918.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1] gi|306905814|gb|EFN36339.1| DNA polymerase III, epsilon subunit [Escherichia coli W] gi|308118469|gb|EFO55731.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7] gi|315059428|gb|ADT73755.1| DNA polymerase III, epsilon subunit [Escherichia coli W] gi|320173695|gb|EFW48884.1| DNA polymerase III epsilon subunit [Shigella dysenteriae CDC 74-1112] gi|320179852|gb|EFW54798.1| DNA polymerase III epsilon subunit [Shigella boydii ATCC 9905] gi|323380013|gb|ADX52281.1| DNA polymerase III, epsilon subunit [Escherichia coli KO11] gi|323945583|gb|EGB41633.1| DNA polymerase III [Escherichia coli H120] gi|324020673|gb|EGB89892.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 117-3] gi|331066301|gb|EGI38179.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271] gi|331076433|gb|EGI47710.1| DNA polymerase III, epsilon subunit [Escherichia coli H591] Length = 246 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + + ++ + T+ I + + K T EEL H+ + + G + + Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVEKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|170021437|ref|YP_001726391.1| DNA polymerase III subunit epsilon [Escherichia coli ATCC 8739] gi|253774763|ref|YP_003037594.1| DNA polymerase III subunit epsilon [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|297518674|ref|ZP_06937060.1| DNA polymerase III subunit epsilon [Escherichia coli OP50] gi|300905642|ref|ZP_07123388.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1] gi|300919145|ref|ZP_07135678.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1] gi|300927906|ref|ZP_07143466.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1] gi|301305771|ref|ZP_07211857.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1] gi|169756365|gb|ACA79064.1| DNA polymerase III, epsilon subunit [Escherichia coli ATCC 8739] gi|253325807|gb|ACT30409.1| DNA polymerase III, epsilon subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300402534|gb|EFJ86072.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1] gi|300413743|gb|EFJ97053.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1] gi|300464061|gb|EFK27554.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1] gi|300838946|gb|EFK66706.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1] gi|315253528|gb|EFU33496.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 85-1] gi|323963578|gb|EGB59135.1| DNA polymerase III [Escherichia coli H489] gi|323972507|gb|EGB67713.1| DNA polymerase III [Escherichia coli TA007] Length = 246 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + T+ I + + K T +EL H+ + Q G + + Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDDELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|311103923|ref|YP_003976776.1| DNA polymerase III subunit epsilon [Achromobacter xylosoxidans A8] gi|310758612|gb|ADP14061.1| DNA polymerase III, epsilon subunit [Achromobacter xylosoxidans A8] Length = 240 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 130/241 (53%), Gaps = 15/241 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD + RI+EIG VE+++ T ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPAQGHRIVEIGCVEMVNRMSTGNNLHIYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F+ + EF F Q AE IAHNA FDV F NAEL + + P+ + Sbjct: 60 TTEFLSDKPRFADVADEFVKFI--QGAELIAHNAAFDVKFFNAELAKTGRGPVTDYCETV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR P RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 118 TDSLLHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 ++ + ++ EL EH+ + L K+ W + Sbjct: 178 DVDD-----GASAGGNGVELARFDASGLPVIKASEAELAEHETYLAALDKSVGGECTWRK 232 Query: 240 Y 240 Sbjct: 233 I 233 >gi|85375423|ref|YP_459485.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis HTCC2594] gi|84788506|gb|ABC64688.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis HTCC2594] Length = 229 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 133/233 (57%), Gaps = 6/233 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD K DR++EIG VEL++ T TF + P R P A ++HG+ Sbjct: 1 MREIVFDTETTGLDPKTGDRMVEIGCVELMNRVPTGETFHAYYNPE-RDMPPAAEEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL DKP F +F +A +AHNA FD GF+N EL+ I ++ + R++D Sbjct: 60 SAAFLSDKPLFRDTADALLEFLG--DAPLVAHNAGFDFGFLNTELELIEREAISLDRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ IAR+KHP ++ L++LC RYG+ SHR KHGALLD+ LL+ VY++++ GG QI G Sbjct: 118 TVQIARKKHPGAKVSLDALCSRYGVDRSHRVKHGALLDAELLAQVYVELL-GGRQIGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 E P P + EEL H ++ + ++ +W+ Sbjct: 177 DPEAADTDPSEAAWKPETVARAFRTPRPHAASAEELARHKVFLEGI-ESPLWN 228 >gi|170732605|ref|YP_001764552.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3] gi|169815847|gb|ACA90430.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia MC0-3] Length = 244 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 134/240 (55%), Gaps = 13/240 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DR+IEIG VELL+ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + + DF ++AE I HNA FD+GF++AE R+ P + Sbjct: 60 TTEFLSDKPKFAEVAHQILDFV--KDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QDSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 +D +SL D +++EL H + L K+ +W + Sbjct: 176 VIDMLDDAGADGSAANGKRVSLAALDL-AVVAASEDELAAHQAQLDELDKSVKGTCVWRQ 234 >gi|16128202|ref|NP_414751.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. MG1655] gi|89107090|ref|AP_000870.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. W3110] gi|170079846|ref|YP_001729166.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. DH10B] gi|238899608|ref|YP_002925404.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952] gi|256024146|ref|ZP_05438011.1| DNA polymerase III subunit epsilon [Escherichia sp. 4_1_40B] gi|118805|sp|P03007|DPO3E_ECOLI RecName: Full=DNA polymerase III subunit epsilon gi|42063|emb|CAA27661.1| unnamed protein product [Escherichia coli] gi|147679|gb|AAA24564.1| DNA polymerase III epsilon subunit [Escherichia coli] gi|1786409|gb|AAC73320.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. MG1655] gi|4902952|dbj|BAA77886.1| DNA polymerase III epsilon subunit [Escherichia coli str. K12 substr. W3110] gi|169887681|gb|ACB01388.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12 substr. DH10B] gi|238860830|gb|ACR62828.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952] gi|315134900|dbj|BAJ42059.1| DNA polymerase III subunit epsilon [Escherichia coli DH1] gi|315616887|gb|EFU97504.1| DNA polymerase III, epsilon subunit [Escherichia coli 3431] gi|323943406|gb|EGB39558.1| DNA polymerase III [Escherichia coli E482] gi|332341543|gb|AEE54877.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli UMNK88] Length = 243 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + T+ I + + K T EE+ H+ + Q G + + Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|327254934|gb|EGE66544.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_7v] Length = 243 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF ++ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + T+ I + + K T EEL H+ + Q G + + Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|283783999|ref|YP_003363864.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168] gi|282947453|emb|CBG87000.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168] Length = 243 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 141/242 (58%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F ++L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHIYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++N+D Sbjct: 66 HGIADEFLLDKPTFADVADEFLDYI--RGAELVIHNASFDIGFMDYEFSKLNRDIPKTSS 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + + ++ ++T+ + + + K + EE+ H+ + + G + + Sbjct: 184 SMTFAME--GETQQQQGEETIQRL-VRQARKLRVVFASDEEVAAHEARLDLVEKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|152986464|ref|YP_001348839.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7] gi|150961622|gb|ABR83647.1| DNA polymerase III, epsilon subunit [Pseudomonas aeruginosa PA7] Length = 246 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 133/242 (54%), Gaps = 12/242 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ RIIEIG VEL T R F V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121 T+E+LKDKP F + ++F++F + A+ I HNA FD+GFIN E + + D + Sbjct: 60 TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR +HP RN+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 TVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237 + E + R R + EEL H + + K+A +W Sbjct: 178 SLAGSGAEGDGSGRPMVSPIRRLDPARVATPVLRASAEELAAHAARLAVIEKSAGGPSLW 237 Query: 238 DR 239 + Sbjct: 238 AQ 239 >gi|300949353|ref|ZP_07163365.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1] gi|300958303|ref|ZP_07170446.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1] gi|301029642|ref|ZP_07192704.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1] gi|301645470|ref|ZP_07245407.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1] gi|307136810|ref|ZP_07496166.1| DNA polymerase III subunit epsilon [Escherichia coli H736] gi|331640665|ref|ZP_08341812.1| DNA polymerase III, epsilon subunit [Escherichia coli H736] gi|1552785|gb|AAB08637.1| DNA polymerase III epsilon chain [Escherichia coli] gi|260450588|gb|ACX41010.1| DNA polymerase III, epsilon subunit [Escherichia coli DH1] gi|299877469|gb|EFI85680.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1] gi|300315009|gb|EFJ64793.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1] gi|300451236|gb|EFK14856.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1] gi|301076259|gb|EFK91065.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1] gi|331040039|gb|EGI12247.1| DNA polymerase III, epsilon subunit [Escherichia coli H736] Length = 246 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + T+ I + + K T EE+ H+ + Q G + + Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|332288192|ref|YP_004419044.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179] gi|330431088|gb|AEC16147.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179] Length = 248 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 85/252 (33%), Positives = 137/252 (54%), Gaps = 16/252 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ ++ R +V D ETTG+ RIIEIGAVEL++ T R F V+L P+ ++ Sbjct: 1 MQMDENRIVVLDTETTGMSGTSEPQIGHRIIEIGAVELVNRRYTGRNFHVYLQPD-QQVD 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA+ +HGITDEFL DKP F + EF +F + AE + HNA FDV F+N E + Sbjct: 60 PEAVAVHGITDEFLADKPRFKEVAQEFINFI--KGAELVIHNAPFDVAFMNQEFALQGQA 117 Query: 117 PLDP--SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ D+L +AR+ +P +N L++LC R GI S R+ HGALLD+ +L+DVY+ M Sbjct: 118 LTTDQLCKVTDSLKVARQLYPGKKNSLDALCSRLGIDNSKRTLHGALLDAEILADVYLAM 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 G + + +E ++ + + + + K + + EE+ H + + + K Sbjct: 178 TGGQGSLQLDTEPAVAVQQQEVQQQIQHSNTPR--KLFVLKPSAEEIQAHQEYLSLINKK 235 Query: 235 ----AIWDRYIS 242 +W + + Sbjct: 236 SGDQCLWQQKLE 247 >gi|148546962|ref|YP_001267064.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1] gi|148511020|gb|ABQ77880.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1] Length = 252 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 131/246 (53%), Gaps = 12/246 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115 + +HGITD FL KP F + EF+ F Q A + HNA FDVGFIN E + + Sbjct: 60 INVHGITDAFLVGKPRFGDVAEEFFQFI--QGATLVIHNAAFDVGFINNEFALLGQQDRA 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D I+DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M Sbjct: 118 DISQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G + ++ + + ++ R + EEL+ H + + + K+A Sbjct: 178 GGQTSLSLAGNGADAEEDGQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIAKSA 237 Query: 236 ----IW 237 +W Sbjct: 238 GGPSLW 243 >gi|319898105|ref|YP_004136302.1| DNA polymerase iii epsilon subunit [Haemophilus influenzae F3031] gi|317433611|emb|CBY81995.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3031] Length = 256 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 93/258 (36%), Positives = 145/258 (56%), Gaps = 19/258 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G + + ++ R +E+ ++ + T +EL H + ++ Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKM 235 Query: 231 LGK----NAIWDRYISSN 244 + K N +WD+ +N Sbjct: 236 MNKKSGNNCLWDKRFGNN 253 >gi|83313644|ref|YP_423908.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] gi|82948485|dbj|BAE53349.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 257 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 90/235 (38%), Positives = 135/235 (57%), Gaps = 6/235 (2%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 MR+IV D ETTG D R++EIG VEL ++ T F + P R EA K+HG Sbjct: 27 PMREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGSVFHRYCNPE-RDMPEEAFKVHG 85 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ++ +FL DKP F+ I ++F +F + + HNA+FD+ FINAEL R+ PL SR I Sbjct: 86 LSADFLSDKPLFAEIVADFLEFIG--DVPLVIHNAEFDMRFINAELTRLGFPPLPMSRSI 143 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DT+ +AR++ P ++ +L++LC+R+ I +HR+KHGALLDS LL++VY++++ GG Q Sbjct: 144 DTVMMARKRFPGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLI-GGRQPGLE 202 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + +P T+EE H + L KNA+W R Sbjct: 203 LGGGKGNGAGGTANASTHQVTREFREPRPHGPTEEETAAHTAFVAKL-KNAVWLR 256 >gi|217978678|ref|YP_002362825.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2] gi|217504054|gb|ACK51463.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2] Length = 235 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 101/237 (42%), Positives = 143/237 (60%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD K RI+EIGAVELL+ T ++F V++ P R EA ++HGI Sbjct: 1 MREIVLDTETTGLDPKQGHRIVEIGAVELLNSIPTGQSFHVYIHPE-RDMPDEAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL KP F+ I DF E A+ IAHNA+FD F+NAE R +PL R++D Sbjct: 60 SLEFLTGKPLFAEIVPALIDFLGE--AKIIAHNAEFDFRFLNAEFLRAEAEPLAWERVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++ARR+ P + N L++LC R+G+ S R KHGALLD+ +L++VY ++ GG Q F Sbjct: 118 TLALARRRFPGASNSLDALCARFGVDTSRRVKHGALLDAEILAEVYAEL-CGGRQAALVF 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 E + +R +PL +++ +E+ H + TLG+ AIW Y+S Sbjct: 177 GGGLGSDAATEAAL-----MRERPEPLAPQLSPQEVAAHAAFVATLGEKAIWQAYLS 228 >gi|323963754|gb|EGB59256.1| DNA polymerase III [Escherichia coli M863] Length = 246 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF ++ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFMNYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + T+ I + + K T EEL H+ + Q G + + Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|146310412|ref|YP_001175486.1| DNA polymerase III subunit epsilon [Enterobacter sp. 638] gi|145317288|gb|ABP59435.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638] Length = 245 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 141/242 (58%), Gaps = 18/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGRNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF ++ N AE + HNA FD+GF++ E ++N++ + Sbjct: 69 HGIADEFLLDKPTFADVADEFIEYIN--GAELVIHNASFDIGFMDYEFSKLNRNIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ +P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKVTDSLALARKMYPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLLMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F +++ + + V + + + ++EEL EH+ + Q G + + Sbjct: 187 SMAFSTESDSQQQANGGIQRV----VRQDSRLRVILASEEELAEHESRLDIVQKKGGSCL 242 Query: 237 WD 238 W Sbjct: 243 WR 244 >gi|163854939|ref|YP_001629237.1| DNA polymerase III subunit epsilon [Bordetella petrii DSM 12804] gi|163258667|emb|CAP40966.1| DNA polymerase III, epsilon chain [Bordetella petrii] Length = 241 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 15/240 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD + RI+EIG VE+++ T ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPSQGHRIVEIGCVEIVNRVVTGNHLHIYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124 T EFL DKP F+ + +F +F Q AE IAHNA FDV F NAEL I + L + Sbjct: 60 TTEFLADKPRFADVAQQFLEFI--QGAELIAHNAAFDVKFFNAELSMIGRGDLSQYCALV 117 Query: 125 -DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR +P RN L++LC R+GI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 118 TDSLQHARTLYPGKRNSLDALCDRHGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 + S+L T +EL EH++ + +L K+ +W + Sbjct: 178 DVDDASQGGGAGIALGAFDSSVLP-----VLAATADELAEHEEYLASLDKSVGGACVWRK 232 >gi|219871037|ref|YP_002475412.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165] gi|219691241|gb|ACL32464.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165] Length = 256 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 92/256 (35%), Positives = 144/256 (56%), Gaps = 17/256 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M + +R++V D ETTG++ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSEQQILRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+++HGIT+E L DKP+F+ I EF +F + AE I HNA FDVGFI+ E + Sbjct: 60 DAEAMQVHGITNEMLADKPAFAEIADEFIEFI--KGAELIIHNAPFDVGFIDHEFSFLPN 117 Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + D+L +AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPEKVAQMCTVTDSLQLARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 MM GG G +E ++ +++ + + ++EL EH K ++ + Sbjct: 178 -MMTGGQIALIGEDEHEQVKTSSAEQVYQPLTIDTSN-LIVLAPDEKELAEHLKYLELIN 235 Query: 233 K----NAIWDRYISSN 244 K N +W R +++ Sbjct: 236 KKSKGNCLWTRELATE 251 >gi|198282704|ref|YP_002219025.1| DNA polymerase III subunit epsilon [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665705|ref|YP_002424896.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247225|gb|ACH82818.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517918|gb|ACK78504.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 248 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 102/240 (42%), Positives = 147/240 (61%), Gaps = 13/240 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++V D ETTG+D K R+IEIGAVEL+D T +Q +L P R + PEAL++HG+T Sbjct: 4 RQVVLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQ-RSSDPEALRIHGLT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFL+D+P F+ + F +F +AE I HNA FD+GF+N ELQ K PL ++DT Sbjct: 63 DEFLQDQPGFAEVADAFLEFLG--DAELIIHNAPFDLGFLNHELQLAGKAPL-RQAVMDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI----- 181 L+ ARR+HP +NDLNSLC+RY + SHR HGALLD+ +L++VY+ M G + Sbjct: 120 LADARRRHPGQKNDLNSLCRRYSVENSHRELHGALLDTRILAEVYLAMTGGQVDMMGMLG 179 Query: 182 -NFGFKTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKNAIWD 238 G E R +++++ + L R + R + EE H + +Q +G NA+W+ Sbjct: 180 AAGGSAATEMRSAGDDRRSEGIPAALSRPRGPLRVIRASAEECMLHRQYLQNMGGNALWE 239 >gi|183601084|ref|ZP_02962577.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827] gi|188019425|gb|EDU57465.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827] Length = 253 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 93/252 (36%), Positives = 141/252 (55%), Gaps = 22/252 (8%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P+ R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL+DKP F+ I EF +F + AE I HNA FD+GF++ E ++NKD Sbjct: 66 HGISDEFLQDKPVFADIADEFIEFI--RGAELIIHNAPFDIGFMDYEFSKLNKDIPPTAD 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN+L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCQITDSLVMARQIFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILADVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTLGKN--- 234 + F + + + V + + R T EEL EH+K + + K Sbjct: 184 SLAFSMEAD-----TSNESYVEEVQRIDRPVSGLRVLYATDEELIEHEKRLDIVDKKGGK 238 Query: 235 -AIWDRYISSNQ 245 +W + + Sbjct: 239 PCLWRQSPEEGE 250 >gi|215485371|ref|YP_002327802.1| DNA polymerase III subunit epsilon [Escherichia coli O127:H6 str. E2348/69] gi|312964723|ref|ZP_07778974.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75] gi|215263443|emb|CAS07763.1| DNA polymerase III, epsilon subunit [Escherichia coli O127:H6 str. E2348/69] gi|312290744|gb|EFR18622.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75] Length = 243 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 136/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + T+ I + + K T EEL H+ + Q G + Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGTCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|167856497|ref|ZP_02479211.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755] gi|167852377|gb|EDS23677.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755] Length = 256 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 92/256 (35%), Positives = 145/256 (56%), Gaps = 17/256 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M ++ +R++V D ETTG++ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MSKQQILRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+++HGIT+E L DKP+F+ I EF +F + AE I HNA FDVGFI+ E + Sbjct: 60 EAEAMQVHGITNEMLADKPAFAEIADEFIEFI--KGAELIIHNAPFDVGFIDHEFSFLPN 117 Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + D+L +AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPEKVAQMCTVTDSLQLARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 MM GG G +E ++ +++ + + ++EL EH K ++ + Sbjct: 178 -MMTGGQIALIGEDEHEQAKTSSVEQVYQPLNIDTSN-LIVLAPDEKELAEHLKYLELIN 235 Query: 233 K----NAIWDRYISSN 244 K N +W R +++ Sbjct: 236 KKSKGNCLWTRELATE 251 >gi|323526835|ref|YP_004228988.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001] gi|323383837|gb|ADX55928.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001] Length = 244 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 91/239 (38%), Positives = 133/239 (55%), Gaps = 14/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRIIE+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRIIEVGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ I EF DF Q A+ I HNA FD+GF++AE + P+ I Sbjct: 60 TTEFLSDKPKFAEIADEFRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + P ++L D + + EEL H + L K ++W Sbjct: 178 DM---LGESHAGGEAHAPRVALDSLD-LVVIAASDEELAAHQAVLDGLDKAIKGTSVWR 232 >gi|77360888|ref|YP_340463.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis TAC125] gi|76875799|emb|CAI87020.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudoalteromonas haloplanktis TAC125] Length = 237 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 89/238 (37%), Positives = 139/238 (58%), Gaps = 13/238 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+D K RIIEIG VEL++ T F V++ P R + EA+ +HGIT Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQ-RNSEEEAIDVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SRI 123 +EFL+DKP F I EF+D+ + AE + HNA FD+G ++ E +N+ ++ Sbjct: 63 NEFLRDKPLFHQIAQEFFDYI--KGAELVIHNAPFDIGHMDNEFSLLNQGYPKTATFCQV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR HP +N+L++LC+RY + + R+ HGALLDS +L+DVY+ M G ++N Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYLAMTGGQVKLNL 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238 N+D ++K + +S +R + ++ E H+ + + G + IW Sbjct: 181 NQNKNDDT--DQQKGGIRRLS-AQRAPLVVLSASEAEQAAHEARLDIVNNEGGHCIWR 235 >gi|254437617|ref|ZP_05051111.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 307] gi|198253063|gb|EDY77377.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 307] Length = 242 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 138/247 (55%), Gaps = 20/247 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGA+EL ++ T RT+ ++ P R A +HGI Sbjct: 1 MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPK-RSMPAGAFGIHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F+ I F DF +A+ + HNA FD+ F+NAEL Sbjct: 60 GPDLLDPPQTPTAGQVILRDKPVFADIAQAFVDFIG--DAKLVIHNAAFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +N+ L + +DTL IAR+K P S L++LC+R+GI S+R+ HGALLDS +L++VY+ Sbjct: 118 VNRPLLPMDQSLDTLGIARKKFPGSPASLDALCRRFGIDNSNRTLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ GG Q + K + R PL +I E+ H I++LG Sbjct: 178 ELI-GGRQPD--LVMGGQTSSKSKTAAEGEWRAQPRPTPLAPKIKAAEVGAHAAFIKSLG 234 Query: 233 KNAIWDR 239 + A+W++ Sbjct: 235 ETALWNK 241 >gi|15601971|ref|NP_245043.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp. multocida str. Pm70] gi|31563219|sp|Q9CPE0|DPO3E_PASMU RecName: Full=DNA polymerase III subunit epsilon gi|12720318|gb|AAK02190.1| DnaQ [Pasteurella multocida subsp. multocida str. Pm70] Length = 253 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 90/254 (35%), Positives = 140/254 (55%), Gaps = 18/254 (7%) Query: 1 MIRKNK-MRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M N+ R+IV D ETTG++ + IIEIGAVE+++ T F +++ PN R Sbjct: 1 MTPVNQPTRQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPN-RP 59 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 P+A+K+HGITDE L DKP F+ + +F D+ Q AE + HNA FDVGF++ E +++N Sbjct: 60 VDPDAIKVHGITDEMLADKPMFNEVAQQFIDYI--QGAELLIHNAPFDVGFMDYEFKKLN 117 Query: 115 KDPLDPSRII--DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + + DTL +AR+ +P RN L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 118 LNINTDAICMVTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + + F NE + ++ + +EL H + L Sbjct: 178 TMTGGQTSL---FDENEPEIAVVAVQEQIQSAVAFSQDLKRLQPNADELQAHLDYLLLLN 234 Query: 233 K----NAIWDRYIS 242 K N +W++ ++ Sbjct: 235 KKSKGNCLWEKRLA 248 >gi|227357997|ref|ZP_03842339.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906] gi|227161732|gb|EEI46764.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906] Length = 252 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 94/251 (37%), Positives = 146/251 (58%), Gaps = 21/251 (8%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119 HGI+DEFL+D PSF+ I EF + + AE I HNA FD+GF++ E Q++N+D Sbjct: 66 HGISDEFLEDCPSFAEIADEFLAYI--RGAELIIHNASFDIGFMDYEFQKLNRDIPLTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR P RN+L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCQITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTGGQT 183 Query: 180 QINFGFKT--NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKN 234 + F + NE++ + ++ V + L+ + + EEL H+ + + G + Sbjct: 184 ALAFSMEGEPNEEQKGDDIQRIVRPVRGLR-----VIKASAEELVAHEARLDLVVKKGGH 238 Query: 235 AIWDRYISSNQ 245 +W +SN Sbjct: 239 CLWRPAPASND 249 >gi|313498009|gb|ADR59375.1| DnaQ [Pseudomonas putida BIRD-1] Length = 252 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 131/246 (53%), Gaps = 12/246 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115 + +HGITD FL KP F + EF+ F Q A + HNA FDVGFIN E + + Sbjct: 60 INVHGITDAFLVGKPRFGDVAEEFFQFI--QGATLVIHNAAFDVGFINNEFALLGQQDRA 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D I+DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M Sbjct: 118 DISQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G + ++ + + ++ R + EEL+ H + + + K+A Sbjct: 178 GGQTSLSLAGNGADAEEDGQGAGGSEIRRIVGRTPGRVIMASAEELEAHAERLAAIAKSA 237 Query: 236 ----IW 237 +W Sbjct: 238 GGPSLW 243 >gi|323938758|gb|EGB35004.1| DNA polymerase III [Escherichia coli E1520] Length = 246 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 136/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIG VE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGGVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + T+ I + + K T EEL H+ + Q G + + Sbjct: 187 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|148827278|ref|YP_001292031.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG] gi|148718520|gb|ABQ99647.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG] Length = 256 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 92/259 (35%), Positives = 147/259 (56%), Gaps = 21/259 (8%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P R++L++LC+R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQINFGFKTNEDRFF----KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 M G + + ++ E ++ + + + + L T +EL H + ++ Sbjct: 176 MTGGQTNLFDEEESVESGVIHVMQEKTAEEIKSAVDFSHNLKLLQ-PTNDELQAHLEFLK 234 Query: 230 TLGK----NAIWDRYISSN 244 + K N +WD+ +N Sbjct: 235 MMNKKSGNNCLWDKRFGNN 253 >gi|319780604|ref|YP_004140080.1| DNA polymerase III, subunit epsilon [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166492|gb|ADV10030.1| DNA polymerase III, epsilon subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 233 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 102/235 (43%), Positives = 147/235 (62%), Gaps = 4/235 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLDS++DR+IE+G VEL++ T RTF ++ P GR EA +HGI+ Sbjct: 1 MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHVEAQAVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L KP+F+ I E+ DF A+ +AHNA FDVGF+N E R+ +D ++DT Sbjct: 61 AADLAGKPTFAEIVQEWLDF--TDGAKLVAHNATFDVGFLNVEFGRLGHPVIDNGVVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++ARRKHP N L++LC+RYGI + R+KHGALLDS LL++VYI+++ GG Q Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNTKRTKHGALLDSELLAEVYIELI-GGKQAALILD 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 + E + + I + R PL R+T+ E H + TLG+ A+W + + Sbjct: 178 SATAPAQGENVRQI-EIVVAPRPAPLPPRVTEAERAAHAGMVGTLGEKALWLKVL 231 >gi|26990834|ref|NP_746259.1| DNA polymerase III subunit epsilon [Pseudomonas putida KT2440] gi|24985842|gb|AAN69723.1|AE016608_9 DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440] Length = 252 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 131/246 (53%), Gaps = 12/246 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115 + +HGITD FL KP F + EF+ F Q A + HNA FDVGFIN E + + Sbjct: 60 INVHGITDAFLVGKPRFGDVAEEFFQFI--QGATLVIHNAAFDVGFINNEFALLGQQDRA 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D I+DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M Sbjct: 118 DISQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G + ++ + + ++ R + EEL+ H + + + K+A Sbjct: 178 GGQTSLSLAGNGADTEEDGQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIAKSA 237 Query: 236 ----IW 237 +W Sbjct: 238 GGPSLW 243 >gi|300715435|ref|YP_003740238.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661] gi|299061271|emb|CAX58380.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661] Length = 244 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 139/249 (55%), Gaps = 17/249 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T + V+L P+ R Sbjct: 1 MSTVNTTRQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNYHVYLKPD-RLV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+F+ I F ++ + AE + HNA FD+GF++ E ++ + Sbjct: 60 DPEAFGVHGIADEFLADKPTFADIADGFLEYID--GAELVIHNASFDIGFMDYEFAKLGR 117 Query: 116 DPLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + RI D+L++AR+ P RN L++LC RY I + R+ HGALLDS +L++V++ Sbjct: 118 NIPKTETFCRITDSLAMARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDSEILAEVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231 M G + + F + ++ + + T+ I+ + ++ E H++ + + Sbjct: 178 AMTGGQTLLKFSMEGDQQQ--QSNGDTIHRITR-PASGLVVLSASEAENMAHEERLDLVM 234 Query: 232 --GKNAIWD 238 G + +W Sbjct: 235 KKGGSCLWR 243 >gi|311694693|gb|ADP97566.1| DNA polymerase 3, epsilon subunit [marine bacterium HP15] Length = 239 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 94/244 (38%), Positives = 145/244 (59%), Gaps = 14/244 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D + RIIEIG VEL++ T R + V++ P+ R+ EA+ +HGI Sbjct: 4 MRQIVLDTETTGIDPAEGHRIIEIGCVELMERQLTGRNYHVYINPD-REVEAEAITVHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRI 123 T+EFL DKP F+ I EF++F + AE + HNA FDVGF+++E R+ + D I Sbjct: 63 TNEFLADKPRFAEIADEFFEFI--KGAELVIHNAAFDVGFMDSEFARLKPVRKTADHCGI 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +D+L+IAR +HP +N+L++LCKRYG+ S+R HGALLD+ +L+DVY+ + G + ++ Sbjct: 121 VDSLAIARARHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVYLLLTGGQTALSL 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRY 240 +E+ + +P R R + E + H + + L K A +W + Sbjct: 181 D-AGSENGGGNGGIRRLP----ADRAPLSVVRASSSEAEAHQEFMSLLEKQAGETVWGKL 235 Query: 241 ISSN 244 S Sbjct: 236 QSPE 239 >gi|315179370|gb|ADT86284.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218] Length = 234 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 135/240 (56%), Gaps = 18/240 (7%) Query: 11 VFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R EA+++HG Sbjct: 2 VLDTETTGMNLEGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD-RAIQDEAIEVHG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---S 121 ITDEFL DKP + + EF DF + AE +AHNA FDVGF++ E +++ Sbjct: 61 ITDEFLVDKPEYKDVHEEFLDFI--RGAELVAHNAPFDVGFMDYEFSKLSIPTAKTDELC 118 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G + + Sbjct: 119 KVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 178 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWDR 239 F + E+ K V R R T +E+ H + + K+ +W + Sbjct: 179 QFSGSSQENGMGAGAIKRVAE----GRKALKVLRATADEIQAHQDRLDIVEKSGTCLWRQ 234 >gi|237730199|ref|ZP_04560680.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2] gi|226905738|gb|EEH91656.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2] Length = 245 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 89/242 (36%), Positives = 138/242 (57%), Gaps = 18/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++ +D + Sbjct: 69 HGIADEFLLDKPTFADVADEFLDYI--RGAELVIHNASFDIGFMDYEFAKLKRDIPKTNE 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + +++ T + + K T EEL H+ + Q G + + Sbjct: 187 TMAFSMEGDS----QQQNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQKKGGSCL 242 Query: 237 WD 238 W Sbjct: 243 WR 244 >gi|22126970|ref|NP_670393.1| DNA polymerase III subunit epsilon [Yersinia pestis KIM 10] gi|45442535|ref|NP_994074.1| DNA polymerase III subunit epsilon [Yersinia pestis biovar Microtus str. 91001] gi|51597279|ref|YP_071470.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP 32953] gi|108806557|ref|YP_650473.1| DNA polymerase III subunit epsilon [Yersinia pestis Antiqua] gi|108813076|ref|YP_648843.1| DNA polymerase III subunit epsilon [Yersinia pestis Nepal516] gi|145598912|ref|YP_001162988.1| DNA polymerase III subunit epsilon [Yersinia pestis Pestoides F] gi|149366915|ref|ZP_01888949.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125] gi|153948473|ref|YP_001400036.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP 31758] gi|162419464|ref|YP_001607083.1| DNA polymerase III subunit epsilon [Yersinia pestis Angola] gi|165924368|ref|ZP_02220200.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938341|ref|ZP_02226899.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166011939|ref|ZP_02232837.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211805|ref|ZP_02237840.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399939|ref|ZP_02305457.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419869|ref|ZP_02311622.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424264|ref|ZP_02316017.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023355|ref|YP_001719860.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis YPIII] gi|186896384|ref|YP_001873496.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis PB1/+] gi|218928251|ref|YP_002346126.1| DNA polymerase III subunit epsilon [Yersinia pestis CO92] gi|229841013|ref|ZP_04461172.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843118|ref|ZP_04463264.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229895464|ref|ZP_04510636.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A] gi|229903519|ref|ZP_04518632.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516] gi|270487300|ref|ZP_06204374.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27] gi|294503098|ref|YP_003567160.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003] gi|21960013|gb|AAM86644.1|AE013910_6 DNA polymerase III, epsilon subunit [Yersinia pestis KIM 10] gi|45437400|gb|AAS62951.1| DNA polymerase III, epsilon chain [Yersinia pestis biovar Microtus str. 91001] gi|51590561|emb|CAH22202.1| DNA polymerase III, epsilon chain [Yersinia pseudotuberculosis IP 32953] gi|108776724|gb|ABG19243.1| DNA polymerase III, epsilon subunit [Yersinia pestis Nepal516] gi|108778470|gb|ABG12528.1| DNA polymerase III, epsilon subunit [Yersinia pestis Antiqua] gi|115346862|emb|CAL19748.1| DNA polymerase III, epsilon chain [Yersinia pestis CO92] gi|145210608|gb|ABP40015.1| DNA polymerase III, epsilon subunit [Yersinia pestis Pestoides F] gi|149291289|gb|EDM41364.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125] gi|152959968|gb|ABS47429.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis IP 31758] gi|162352279|gb|ABX86227.1| DNA polymerase III, epsilon subunit [Yersinia pestis Angola] gi|165913719|gb|EDR32338.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923428|gb|EDR40560.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165989106|gb|EDR41407.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207576|gb|EDR52056.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962610|gb|EDR58631.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050647|gb|EDR62055.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057113|gb|EDR66876.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749889|gb|ACA67407.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis YPIII] gi|186699410|gb|ACC90039.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis PB1/+] gi|229679289|gb|EEO75392.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516] gi|229689465|gb|EEO81526.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229697379|gb|EEO87426.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701619|gb|EEO89646.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A] gi|262361135|gb|ACY57856.1| DNA polymerase III subunit epsilon [Yersinia pestis D106004] gi|270335804|gb|EFA46581.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27] gi|294353557|gb|ADE63898.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003] gi|320014218|gb|ADV97789.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 254 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 138/249 (55%), Gaps = 17/249 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+F+ I EF DF + AE + HNA FD+GF++ E + + +D Sbjct: 66 HGISDEFLADKPTFADITPEFLDFI--RGAELVIHNAAFDIGFMDYEFRMLQQDIPKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAI 236 + F + + + + I+ T++EL H+ + G + + Sbjct: 184 SLTFSME--GEVSQNNASEDIQRITR-PASALKIIYATEDELANHESRLDFVMKKGGSCL 240 Query: 237 WDRYISSNQ 245 W + + + Sbjct: 241 WRMPLEAEE 249 >gi|170768002|ref|ZP_02902455.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627] gi|170123490|gb|EDS92421.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627] Length = 243 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 138/242 (57%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + T+ I + + K T EEL+ H+ + Q G + + Sbjct: 184 SMAFAME--GETQQQQGEVTIQRI-VRQASKLRIVFATDEELEAHEARLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|212635110|ref|YP_002311635.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3] gi|212556594|gb|ACJ29048.1| DNA polymerase III, epsilon subunit [Shewanella piezotolerans WP3] Length = 242 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 20/248 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I + R+I+ D ETTG++ RIIEIG VE+++ T R + ++ P + Sbjct: 3 IISSAKRQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVVNRKLTGRHYHEYINP-LQPI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA---ELQR 112 EA+++HGIT+EF+ DKP F I F +F + AE +AHNA FDV F++ LQ Sbjct: 62 DEEAIEVHGITNEFVADKPKFHQIAQSFIEFID--GAEIVAHNANFDVSFMDHEFSMLQP 119 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + +I+D+L+IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 IGPKTAEICQILDSLAIAKYLHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G ++ N + ++ N R K + +EL H++ + + Sbjct: 180 IMTGGQTKFNLSSEK------AGQEGGGINRLPKDRAKLKVISASADELTRHEERLDLVA 233 Query: 233 KN--AIWD 238 K+ IW Sbjct: 234 KSGQCIWR 241 >gi|170722630|ref|YP_001750318.1| DNA polymerase III subunit epsilon [Pseudomonas putida W619] gi|169760633|gb|ACA73949.1| DNA polymerase III, epsilon subunit [Pseudomonas putida W619] Length = 254 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 130/240 (54%), Gaps = 8/240 (3%) Query: 1 MIRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ S+ RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRLVILDTETTGMPVSEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115 + +HGITD FL KP F + EF++F Q A + HNA FDVGFIN E + + Sbjct: 60 INVHGITDAFLVGKPRFGDVAEEFFEFI--QGATLVIHNAAFDVGFINNEFALLGQRDRA 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D I+DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M Sbjct: 118 DISQHCTILDTLLLARARHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G + ++ + + + R T EEL+ H + + + K+A Sbjct: 178 GGQTSLSLAGNGADGDNEGQGSGGSEIRRITGRAPGRVIMATAEELEAHAERLAAIAKSA 237 >gi|167034708|ref|YP_001669939.1| DNA polymerase III subunit epsilon [Pseudomonas putida GB-1] gi|166861196|gb|ABY99603.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1] Length = 252 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 129/240 (53%), Gaps = 8/240 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115 + +HGITD FL KP F + EF++F Q A + HNA FDVGFIN E I + Sbjct: 60 INVHGITDAFLVGKPRFGDVAEEFFEFI--QGATLVIHNAAFDVGFINNEFALIGQQDRA 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D I+DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M Sbjct: 118 DVSQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G + ++ + E + R + EEL+ H + + + K+A Sbjct: 178 GGQTSLSLAGHGADAEGEGSEAGGSEIRRITGRTPGRVIMASAEELEAHAERLAAIAKSA 237 >gi|220934132|ref|YP_002513031.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219995442|gb|ACL72044.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 235 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 9/240 (3%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + N R++V D ETTGL+ + RIIEIG VEL+ T RTF +L P+ R+ AL Sbjct: 1 MSDNNHRQVVLDTETTGLEPAQGHRIIEIGCVELVGRRITRRTFHHYLQPD-REIDEGAL 59 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDP 117 +HGI++EFL DKP F+ + EF +F + AE + HNA FDVGF++ EL+ ++ Sbjct: 60 AVHGISNEFLADKPRFADVVDEFLEFI--RGAELVIHNAPFDVGFLDHELKLLDAARGQV 117 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D S I+DTL +ARR HP RN L++LCKRY I S R HGALLD+ +L+DVY+ M G Sbjct: 118 TDYSSILDTLDLARRMHPGQRNSLDALCKRYQIDNSGRELHGALLDARILADVYLAMTGG 177 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + ++ G + E + R + R ++ EL H + ++ L + W Sbjct: 178 QTTLSLGGEAAG--VNGEARAESIRRLPEARARLRVIRPSEAELQAHTRLLEKLNPPSPW 235 >gi|319775991|ref|YP_004138479.1| DNA polymerase III subunit epsilon [Haemophilus influenzae F3047] gi|329123857|ref|ZP_08252414.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus aegyptius ATCC 11116] gi|317450582|emb|CBY86799.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3047] gi|327468820|gb|EGF14294.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus aegyptius ATCC 11116] Length = 256 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 94/258 (36%), Positives = 144/258 (55%), Gaps = 19/258 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + RIIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHRIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E ++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFHKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G + + ++ R +E+ ++ + T +EL H + ++ Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKM 235 Query: 231 LGK----NAIWDRYISSN 244 + K N +WD+ +N Sbjct: 236 MNKKSGNNCLWDKRFGNN 253 >gi|226328903|ref|ZP_03804421.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198] gi|225202089|gb|EEG84443.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198] Length = 250 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 93/244 (38%), Positives = 141/244 (57%), Gaps = 21/244 (8%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPE-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL+D PSF+ I EF ++ + AE I HNA FD+GF++ E +++N+D Sbjct: 66 HGISDEFLEDCPSFADIADEFLEYI--RGAELIIHNASFDIGFMDYEFRKLNRDIPPTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCQITDSLAMARALFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTLGKN--- 234 + F + + ++ +I ++R R T EEL EH+ + + K Sbjct: 184 ALAFSMEGESNNEQEQN-----DIQRIERPVSGLRVIRATAEELAEHESRLDLVEKKGGH 238 Query: 235 AIWD 238 +W Sbjct: 239 CLWR 242 >gi|300112990|ref|YP_003759565.1| DNA polymerase III subunit epsilon [Nitrosococcus watsonii C-113] gi|299538927|gb|ADJ27244.1| DNA polymerase III, epsilon subunit [Nitrosococcus watsonii C-113] Length = 243 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 136/244 (55%), Gaps = 12/244 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K RIIEIG VEL +T +TF +L P R+ ALK+HG+ Sbjct: 1 MRQIILDTETTGLEPKEGHRIIEIGGVELNCRRRTGQTFHCYLNPE-REVDEGALKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122 ++EFL DKP F I EF F + AE + HNA FDVGF++ EL + + + Sbjct: 60 SNEFLSDKPRFIEIAEEFLAFI--KGAELVIHNAPFDVGFLDHELYLLGSNWGKVSVNCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR++HP +N+L++LCKRYGI S R HGALLD+ +L+ VY+ M G ++ Sbjct: 118 VLDTLQLARQRHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILAGVYLAMTGGQVSLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 + + + +S +R R ++EE H+ + + K +W Sbjct: 178 LHEYGDNSTSSRSGEGNYRPVS-AERAPLKIARASREEQRAHEACLTAIDKTSAGACVWH 236 Query: 239 RYIS 242 + S Sbjct: 237 QLDS 240 >gi|126734401|ref|ZP_01750148.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2] gi|126717267|gb|EBA14131.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2] Length = 241 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 137/246 (55%), Gaps = 20/246 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGAVEL+ + T RT+ ++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFEPHEGDRIVEIGAVELMGHVPTGRTYHQYINPQ-RSMPAEAFGVHGI 59 Query: 66 TD-------------EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 E L+DKP F + +F DF +A+ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQDPKPGQETLRDKPLFKDVAQDFVDFVG--DAKLVIHNAAFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +N+ L + +DTL+IARRK P S L++LC+R+ I S R+ HGALLDS +L++VY+ Sbjct: 118 LNRPLLPMDQALDTLAIARRKFPGSPASLDALCRRFAIDNSSRTLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ GG Q +F D + R +PL ++T EE H ++ LG Sbjct: 178 ELI-GGRQPDFALAA--DTRSQSAGGQSDEWRPSARPEPLAPKLTIEEAAAHAAFVEQLG 234 Query: 233 KNAIWD 238 AIW Sbjct: 235 DGAIWK 240 >gi|260596631|ref|YP_003209202.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032] gi|260215808|emb|CBA28259.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032] Length = 243 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 135/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFMV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119 HGI+DEFL +KP F + +F D+ + AE + HNA FD+GF++ E + + Sbjct: 66 HGISDEFLMNKPVFGDVVEDFLDYI--RGAELVIHNASFDIGFMDYEFGMLKRGLPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 I F + + + + + + + + + + R EEL H+ + Q G + + Sbjct: 184 SIAFAMEGDGQQ--QRDDTGIQRV-VRQASRLKVVRACDEELAAHESRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|260431958|ref|ZP_05785929.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260415786|gb|EEX09045.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 240 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 96/247 (38%), Positives = 137/247 (55%), Gaps = 22/247 (8%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGA+EL ++ T T+ V++ P R EA +HGI Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAIELWNHVATGETYHVYINPE-RSMPAEAFGVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L KDKP F+ I F DF +A + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQKPEPGQITLKDKPVFAQIGQAFRDFVG--DARLVIHNAAFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + P+ + +DTL+IAR++ P S L++LC+R+ I S+R HGALLDS +L++VY+ Sbjct: 118 MGLPPIPMEQALDTLAIARKRFPGSPASLDALCRRFNIDNSNRVLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ GG Q +FG + R PL RIT EE H+ ++ LG Sbjct: 178 ELI-GGRQPDFGLSAAR----SDSGGGGETWRPGPRPAPLPPRITAEERAAHEAFVKKLG 232 Query: 233 KNAIWDR 239 NA+W R Sbjct: 233 DNALWTR 239 >gi|110834086|ref|YP_692945.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2] gi|110647197|emb|CAL16673.1| DNA polymerase III, epsilon subunit [Alcanivorax borkumensis SK2] Length = 247 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 130/232 (56%), Gaps = 8/232 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGL+ R+IEIG VE+ + T + ++L P R+ AL +HGI Sbjct: 1 MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNSLHLYLNPE-REIDAGALAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 + EFL DKP+F + EF F + AE + HNA FDVGF+N EL+R+ Sbjct: 60 SSEFLADKPTFDKVVDEFLAFVD--GAELVIHNAPFDVGFLNHELRRLGTRYGTIEQRCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+KHP +N L++LC+RY + HR HGALLD+ +L+DVY+ M G +++ Sbjct: 118 VLDTLVMARQKHPGQKNSLDALCRRYFVENGHRELHGALLDAEILADVYLAMTGGQTRLF 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 G + +R +T+ +S R R ++ E H + + K Sbjct: 178 SGGNDSSERGGGAAAETIRRLS-ADRVPLCVVRASENEQQRHRNKLAAIAKK 228 >gi|325277453|ref|ZP_08143061.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] gi|324097411|gb|EGB95649.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] Length = 252 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 88/240 (36%), Positives = 129/240 (53%), Gaps = 8/240 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ + RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDKRYVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115 + +HGITD FL KP F+ + EF++F Q A + HNA FDVGFIN E + + Sbjct: 60 INVHGITDAFLVGKPRFADVADEFFEFI--QGATLVIHNAAFDVGFINNEFALLGQQHRA 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D ++DTL +AR +HP RN L++LCKRY I S R HGALLDS LL+DVY+ M Sbjct: 118 DVSQYCTVLDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G + ++ + + + R +EL+ H + + + K+A Sbjct: 178 GGQTSLSLAGHGADAEGDGQAGGGSEIRRITGRAPGRVIMANAQELEAHAERLAAIAKSA 237 >gi|145635316|ref|ZP_01791019.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA] gi|145267460|gb|EDK07461.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA] Length = 255 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 93/257 (36%), Positives = 142/257 (55%), Gaps = 18/257 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDLAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTL 231 M G + + + ++KT I + T +EL H + ++ + Sbjct: 176 MTGGQTNLFDEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMM 235 Query: 232 GK----NAIWDRYISSN 244 K N +W++ +N Sbjct: 236 NKKSGNNCLWEKRFGNN 252 >gi|33151469|ref|NP_872822.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP] gi|33147689|gb|AAP95211.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP] Length = 256 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 91/251 (36%), Positives = 138/251 (54%), Gaps = 19/251 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M +R++V D ETTG++ IIEIGAVEL++ T RTF V++ P R+ Sbjct: 1 MSEPQIIRQVVLDTETTGMNFNGPPQIGHNIIEIGAVELINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+ FL+DKP+F+ I EF F Q AE I HNA FDV FI+ E + Sbjct: 60 EEEAIKVHGITNAFLQDKPTFAEIAHEFLAFI--QGAELIIHNAPFDVAFIDQEFSSLVN 117 Query: 116 DP---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + + DTL +AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPSKTAEMCTVTDTLQMARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTL 231 M G + E +++++T + + ++++EE H + + L Sbjct: 178 MMTGGQLAL---LTEEEHSHTQQQRETSLAVKEHFDTSGLIVLQLSQEECQAHQEYLALL 234 Query: 232 GK----NAIWD 238 K N +W+ Sbjct: 235 DKKSKGNCLWN 245 >gi|16272104|ref|NP_438306.1| DNA polymerase III subunit epsilon [Haemophilus influenzae Rd KW20] gi|1169396|sp|P43745|DPO3E_HAEIN RecName: Full=DNA polymerase III subunit epsilon gi|1573090|gb|AAC21808.1| DNA polymerase III, epsilon subunit (dnaQ) [Haemophilus influenzae Rd KW20] Length = 256 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 93/258 (36%), Positives = 145/258 (56%), Gaps = 19/258 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPD-RPX 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQINFGFKTNED---RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G + + ++ E R +E+ ++ + T +EL H + ++ Sbjct: 176 MTGGQTNLFDEEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKM 235 Query: 231 LGK----NAIWDRYISSN 244 + K N +WD+ +N Sbjct: 236 MNKKSGNNCLWDKRFGNN 253 >gi|307261758|ref|ZP_07543424.1| hypothetical protein appser12_13170 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868576|gb|EFN00387.1| hypothetical protein appser12_13170 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 248 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 88/241 (36%), Positives = 134/241 (55%), Gaps = 16/241 (6%) Query: 11 VFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ EA+K+HGI Sbjct: 2 VLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122 T+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + P + Sbjct: 61 TNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLGNPPPKTAEMCS 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ MM GG Sbjct: 119 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLAL 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 G + + I+ + + +++EE H++ ++ + K N IW Sbjct: 178 LGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWM 237 Query: 239 R 239 R Sbjct: 238 R 238 >gi|118161395|gb|ABK64077.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum] Length = 238 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 100/238 (42%), Positives = 135/238 (56%), Gaps = 17/238 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + DRI+EIGAVEL + T F ++ P R + AL +HG+ Sbjct: 1 MRQIVLDTETTGLNPRTGDRILEIGAVELNNRMLTGNNFHHYINPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123 T EFL DKP F+ I EF F AE I HNA FD+GF+NAE +R+N P+ Sbjct: 60 TTEFLSDKPKFAEIAEEFRAFIA--GAELIIHNAPFDIGFLNAEFKRLNLPPVHEQVHGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A+ HP RN L++LC RYG++ +HR HGALLDS LL+DVY+ M G + ++ Sbjct: 118 IDTLVQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQNSLS- 176 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237 E+ + + + L + +F T +EL H+ TI L K IW Sbjct: 177 ---MEEEVEVAADGAVLEIVPLAE---VIFQSATADELAAHEATIAGLDKAAKGQCIW 228 >gi|145299712|ref|YP_001142553.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp. salmonicida A449] gi|142852484|gb|ABO90805.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp. salmonicida A449] Length = 244 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 94/250 (37%), Positives = 138/250 (55%), Gaps = 17/250 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M R+I+ D ETTG+++ RIIEIG VE+++ T + V++ P+ R Sbjct: 1 MNTPQLNRQIILDTETTGMNTAGGPIYLGHRIIEIGCVEVINRKLTGNHYHVYIKPD-RL 59 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 PEA+++HGITD FL DKPSFS I ++F DF + AE IAHNA FDV F++ E ++ Sbjct: 60 VDPEAIQVHGITDVFLADKPSFSQIANDFIDFI--RGAELIAHNAPFDVSFMDYEFGKLG 117 Query: 115 KDPL--DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + D I DTL+IAR P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 118 LNFKTRDICSITDTLAIARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---Q 229 M G +++N +++E + + T R R + H+ + Q Sbjct: 178 LMTGGQTKLNLATESSES---ERNQDTSIRRLESNRPPLKVVRAGADIEAVHEARLDLVQ 234 Query: 230 TLGKNAIWDR 239 G +W + Sbjct: 235 KKGGACLWRQ 244 >gi|71726088|gb|AAZ39211.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum] Length = 238 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 98/238 (41%), Positives = 134/238 (56%), Gaps = 17/238 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + DRI+EIG VEL + T F ++ P R + AL +HG+ Sbjct: 1 MRQIVLDTETTGLNPRTGDRILEIGGVELNNRMLTGNNFHQYINPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123 T EFL DKP F+ I EF F AE I HNA FD+GF+NAE +R+N P+ Sbjct: 60 TTEFLSDKPKFAEIAEEFRAFIA--GAELIIHNAPFDIGFLNAEFKRLNLPPVHEQVHGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A+ HP RN L++LC RYG++ +HR HGALLDS LL+DVY+ M G + ++ Sbjct: 118 IDTLVQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQNSLS- 176 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237 E+ + + + L + +F T +EL H+ +I L K IW Sbjct: 177 ---MEEEVEVAADGAALEIVPLAE---VIFQSATADELAAHEASIAGLDKAAKGQCIW 228 >gi|49082166|gb|AAT50483.1| PA1816 [synthetic construct] Length = 247 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 132/242 (54%), Gaps = 12/242 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ RIIEIG VEL T R F V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121 T+E+LKDKP F + ++F++F + A+ I HNA FD+GFIN E + + D + Sbjct: 60 TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR +HP RN+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237 + E + R R EEL H + + K+A +W Sbjct: 178 SLAGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLW 237 Query: 238 DR 239 + Sbjct: 238 AQ 239 >gi|170726953|ref|YP_001760979.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908] gi|169812300|gb|ACA86884.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908] Length = 242 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 136/249 (54%), Gaps = 22/249 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I + R+I+ D ETTG++ RIIEIG VE+++ T R + ++ P + Sbjct: 3 IVSSSKRQIILDTETTGMNQGAGAIFLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QII 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 EA+++HGIT+EF+ KP F+ + F +F + AE +AHNA FDV F++ E + Sbjct: 62 DEEAIEVHGITNEFVAHKPKFAEVAQSFIEFID--GAEIVAHNANFDVSFMDHEFSLLQP 119 Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D I+DTL IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 VGPKTADICPILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK-RDKPLFTRITKEELDEHDKTIQTL 231 M G ++ N + KE ++ L + R+K T +EL H++ + + Sbjct: 180 MMTGGQTKFNLSSE-------KEGSESGGIRRLSQSRNKLKVITATADELAMHEERLNLV 232 Query: 232 GKN--AIWD 238 K+ IW Sbjct: 233 AKSGQCIWR 241 >gi|145637904|ref|ZP_01793548.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH] gi|145268904|gb|EDK08863.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH] Length = 256 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 94/258 (36%), Positives = 144/258 (55%), Gaps = 19/258 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G + + ++ R +E+ ++ + T +EL H + ++ Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKM 235 Query: 231 LGK----NAIWDRYISSN 244 L K N +WD+ +N Sbjct: 236 LNKKSGNNCLWDKRFGNN 253 >gi|127513039|ref|YP_001094236.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] gi|126638334|gb|ABO23977.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] Length = 242 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 137/248 (55%), Gaps = 20/248 (8%) Query: 2 IRKNKMRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ RIIEIG VE+++ T R F ++ P + Sbjct: 3 IISNAKRQVILDTETTGMNQGAGAVYFGHRIIEIGCVEVINRKLTGRHFHEYINP-MQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 EA+ +HGIT+EF+ DKP F+ I F +F + AE +AHNA FDV F++ E + Sbjct: 62 DEEAITVHGITNEFVADKPVFAQIAPAFLEFID--GAEIVAHNANFDVSFMDHEFSLLTP 119 Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D +++D+L IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 RGPKTTDICQVLDSLEIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G ++ F+ + ++ +E + + R + +EL+ H++ + + Sbjct: 180 IMTGGQTK----FELSNEKPGQESGGIIRLAN--NRPSLKVIGASADELNMHEQRLDLVE 233 Query: 233 KN--AIWD 238 K+ IW Sbjct: 234 KSGQCIWR 241 >gi|170739343|ref|YP_001767998.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46] gi|168193617|gb|ACA15564.1| DNA polymerase III, epsilon subunit [Methylobacterium sp. 4-46] Length = 238 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 99/241 (41%), Positives = 148/241 (61%), Gaps = 10/241 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +R+IV D ETTG D+K DR++EIG +ELL++ T R F ++ P R S AL +HG+ Sbjct: 2 LREIVLDTETTGTDAKTDRLVEIGGIELLNHIPTGREFHRYINPQ-RPVSQGALAVHGLA 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSRI 123 D FL DKP F++I F DF +A ++ HNA FDVGF+NAE R+ +D + + Sbjct: 61 DAFLADKPPFAAILPAFLDFCG--DATFVIHNAAFDVGFLNAEYARLGDAAPPAIDLAGV 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL++ARRKHP++ N+L++LC RYGI S R+KHGALLD+ +L++VYI+++ GG Q + Sbjct: 119 VDTLALARRKHPNAANNLDALCARYGIDNSRRTKHGALLDAQILAEVYIELL-GGKQTSL 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 G + + P + + + +R+T+ E + H LG AIW YI Sbjct: 178 GLTLDVASTVRVATLGGPAAHV---PRAVRSRLTQAEREAHAAFTAGLGGGAIWRDYIGE 234 Query: 244 N 244 + Sbjct: 235 D 235 >gi|309750446|gb|ADO80430.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2866] Length = 256 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 94/258 (36%), Positives = 144/258 (55%), Gaps = 19/258 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G + + ++ R +E+ ++ + T +EL H + ++ Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKAAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKM 235 Query: 231 LGK----NAIWDRYISSN 244 L K N +WD+ +N Sbjct: 236 LNKKSGNNCLWDKRFGNN 253 >gi|323259856|gb|EGA43487.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] Length = 243 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + R ++ ++T+ I + + + + EEL H+ + Q G + + Sbjct: 184 SMTFAMEGETQR--QQGEETIQRI-VRQASRLRVVFASDEELAAHESRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|16759250|ref|NP_454867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763647|ref|NP_459262.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142975|ref|NP_806317.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414616|ref|YP_151691.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363544|ref|YP_002143181.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205351595|ref|YP_002225396.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855776|ref|YP_002242427.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|60392203|sp|P0A1G9|DPO3E_SALTY RecName: Full=DNA polymerase III subunit epsilon gi|60392204|sp|P0A1H0|DPO3E_SALTI RecName: Full=DNA polymerase III subunit epsilon gi|25299960|pir||AF0534 DNA polymerase III epsilon chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|1172157|gb|AAA86422.1| dnaQ [Salmonella enterica subsp. enterica serovar Typhimurium] gi|1794290|gb|AAC44792.1| DNA polymerase III epsilon chain [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16418764|gb|AAL19221.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501541|emb|CAD08718.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29138607|gb|AAO70177.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128873|gb|AAV78379.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095021|emb|CAR60567.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205271376|emb|CAR36169.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707579|emb|CAR31853.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245489|emb|CBG23279.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991951|gb|ACY86836.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156885|emb|CBW16361.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332987210|gb|AEF06193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 243 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + R ++ + T+ I + + + ++EEL H+ + Q G + + Sbjct: 184 SMTFAMEGETQR--QQGEATIQRI-VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|238913716|ref|ZP_04657553.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 246 Score = 235 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPVFADVIDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + R ++ + T+ I + + + ++EEL H+ + Q G + + Sbjct: 187 SMTFAMEGETQR--QQGEATIQRI-VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|167623805|ref|YP_001674099.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis HAW-EB4] gi|167353827|gb|ABZ76440.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis HAW-EB4] Length = 242 Score = 235 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 20/242 (8%) Query: 8 RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG++ RIIEIG VE+++ T R + ++ P + EA+ Sbjct: 9 RQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QPIDEEAIA 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPL 118 +HGIT+EF+ DKP F I F +F + AE +AHNA FDV F++ E + Sbjct: 68 VHGITNEFVADKPKFHEIAQSFIEFID--GAEIVAHNANFDVSFMDHEFSMLQPRGPKTA 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D +I+D+L+IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M G Sbjct: 126 DICQILDSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGALLDAEILADVYLLMTGGQ 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 ++ N + + + R K + +EL H++ + + K+ + Sbjct: 186 TKFNLSSEKAGQEGGGIHRLSA------DRSKLKVIAASADELIRHEERLDLVAKSGQCL 239 Query: 237 WD 238 W Sbjct: 240 WR 241 >gi|113970494|ref|YP_734287.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4] gi|114047729|ref|YP_738279.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7] gi|113885178|gb|ABI39230.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4] gi|113889171|gb|ABI43222.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7] Length = 242 Score = 235 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 136/248 (54%), Gaps = 20/248 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ RIIEIG VE+++ T R + ++ P G+ Sbjct: 3 IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QR 112 PEA+ +HGITDE + ++P F I EF DF + AE +AHNA FDV F++ E Q Sbjct: 62 DPEAIAVHGITDERVANEPRFHQIAQEFIDFIS--GAEIVAHNANFDVSFMDHEFSLLQP 119 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + D I+D+L IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 LGPKTSDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G ++ N +NE+ +E + + R + +EL H++ + + Sbjct: 180 AMTGGQTKFNL---SNEE--VGQEAGGIQRFDPTSLN-LKVIRASADELVMHEERLDLVA 233 Query: 233 K--NAIWD 238 K +W Sbjct: 234 KSGKCLWR 241 >gi|91223500|ref|ZP_01258765.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|254228411|ref|ZP_04921837.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25] gi|262393546|ref|YP_003285400.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|269966277|ref|ZP_06180366.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] gi|91191586|gb|EAS77850.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01] gi|151938999|gb|EDN57831.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25] gi|262337140|gb|ACY50935.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25] gi|269829192|gb|EEZ83437.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B] Length = 240 Score = 235 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 94/239 (39%), Positives = 142/239 (59%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ PEA++ Sbjct: 11 RIVVLDTETTGMNREGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPEAVE 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITDEFL DKP ++S+ EF +F + AE +AHNA FD GF++ E ++ Sbjct: 70 VHGITDEFLVDKPEYASVHQEFLEFI--KGAELVAHNAPFDTGFMDYEFGMLDPNIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLFMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + + F E +T+ I R R + +EL+ H K ++ + + IW Sbjct: 188 TSLEFNANKQEGGV-----ETIRRIE--GRKALKVLRASADELEAHQKRLELVN-DCIW 238 >gi|15597013|ref|NP_250507.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1] gi|107101248|ref|ZP_01365166.1| hypothetical protein PaerPA_01002281 [Pseudomonas aeruginosa PACS2] gi|218892230|ref|YP_002441097.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58] gi|254234910|ref|ZP_04928233.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719] gi|296389793|ref|ZP_06879268.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1] gi|313110514|ref|ZP_07796399.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016] gi|9947801|gb|AAG05205.1|AE004608_4 DNA polymerase III, epsilon chain [Pseudomonas aeruginosa PAO1] gi|7229492|gb|AAF42851.1| mismatch repair protein MutD [Pseudomonas aeruginosa PAO1] gi|126166841|gb|EAZ52352.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719] gi|218772456|emb|CAW28238.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa LESB58] gi|310882901|gb|EFQ41495.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016] Length = 246 Score = 235 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 132/242 (54%), Gaps = 12/242 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ RIIEIG VEL T R F V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121 T+E+LKDKP F + ++F++F + A+ I HNA FD+GFIN E + + D + Sbjct: 60 TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR +HP RN+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237 + E + R R EEL H + + K+A +W Sbjct: 178 SLAGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLW 237 Query: 238 DR 239 + Sbjct: 238 AQ 239 >gi|145628970|ref|ZP_01784769.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21] gi|144978473|gb|EDJ88196.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21] Length = 256 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 94/258 (36%), Positives = 145/258 (56%), Gaps = 19/258 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G + + ++ R +E+ ++ + T +EL H + ++ Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKAAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKM 235 Query: 231 LGK----NAIWDRYISSN 244 L K N +WD+ +N Sbjct: 236 LNKKSGNNCLWDKRFGNN 253 >gi|227329796|ref|ZP_03833820.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 245 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+++ I +F DF + AE + HNA FD+GF++ E + +N+D Sbjct: 66 HGISDEFLADKPTYADIVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + E + E +T+ I + + + EL H++ + + G + + Sbjct: 184 SLTFSME-GETQQKSENTETIQRI-VRPQSALKVLYADEAELLAHEQRLDLIAKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|168238647|ref|ZP_02663705.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736138|ref|YP_002113281.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204927010|ref|ZP_03218212.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194711640|gb|ACF90861.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288607|gb|EDY27984.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323675|gb|EDZ08870.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322614544|gb|EFY11473.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620062|gb|EFY16934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623357|gb|EFY20196.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629345|gb|EFY26124.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632065|gb|EFY28819.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637197|gb|EFY33899.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640310|gb|EFY36970.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645923|gb|EFY42443.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652378|gb|EFY48732.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652582|gb|EFY48932.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660392|gb|EFY56628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664545|gb|EFY60738.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669402|gb|EFY65552.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670948|gb|EFY67081.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678813|gb|EFY74868.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681842|gb|EFY77867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687968|gb|EFY83934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194322|gb|EFZ79517.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197738|gb|EFZ82870.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203466|gb|EFZ88491.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206789|gb|EFZ91742.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213392|gb|EFZ98193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214685|gb|EFZ99436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221462|gb|EGA05878.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226220|gb|EGA10436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229992|gb|EGA14112.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233731|gb|EGA17820.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238575|gb|EGA22633.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244263|gb|EGA28272.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246424|gb|EGA30407.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252193|gb|EGA36046.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258046|gb|EGA41725.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323265129|gb|EGA48628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272692|gb|EGA56099.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 246 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + R ++ ++T+ I + + + + EEL H+ + Q G + + Sbjct: 187 SMTFAMEGETQR--QQGEETIQRI-VRQASRLRVVFASDEELAAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|92115747|ref|YP_575476.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14] gi|91798641|gb|ABE61016.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14] Length = 239 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 136/239 (56%), Gaps = 9/239 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV DIETTGLD + DR++EIG VE+ + T +TF ++ P R EA +HG+ Sbjct: 1 MREIVLDIETTGLDPLRGDRVVEIGCVEIFNRMPTGQTFHRYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL +KP F+ I +F +F +A + HNA FD+ FINAEL R+ + R++D Sbjct: 60 SSEFLAEKPLFTHIVDDFLEFIG--DAPLVIHNASFDISFINAELDRLKMRTIGRDRLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ G Q Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLI-GARQPQLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 R ++ +R PL R+T + H + TLG+ AIW + + Sbjct: 177 AETASRRTGGTL----DMPRRQRTVPLAPRVTDADRIAHRDFVATLGEKAIWKEFAGTE 231 >gi|167995093|ref|ZP_02576183.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232195|ref|ZP_02657253.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239998|ref|ZP_02664930.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261338|ref|ZP_02683311.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465317|ref|ZP_02699199.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819164|ref|ZP_02831164.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445947|ref|YP_002039498.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449519|ref|YP_002044248.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471875|ref|ZP_03077859.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248793|ref|YP_002145264.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263319|ref|ZP_03163393.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244203|ref|YP_002214220.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389565|ref|ZP_03216176.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213419655|ref|ZP_03352721.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428417|ref|ZP_03361167.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646369|ref|ZP_03376422.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852644|ref|ZP_03382176.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828784|ref|ZP_06546543.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|194404610|gb|ACF64832.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407823|gb|ACF68042.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458239|gb|EDX47078.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195631798|gb|EDX50318.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197212496|gb|ACH49893.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241574|gb|EDY24194.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938719|gb|ACH76052.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602010|gb|EDZ00556.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205327163|gb|EDZ13927.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333347|gb|EDZ20111.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339912|gb|EDZ26676.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344083|gb|EDZ30847.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349720|gb|EDZ36351.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|312911229|dbj|BAJ35203.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084513|emb|CBY94305.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224918|gb|EFX49979.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128579|gb|ADX16009.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621964|gb|EGE28309.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626623|gb|EGE32966.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 246 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + R ++ + T+ I + + + ++EEL H+ + Q G + + Sbjct: 187 SMTFAMEGETQR--QQGEATIQRI-VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|163850914|ref|YP_001638957.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens PA1] gi|163662519|gb|ABY29886.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens PA1] Length = 241 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 145/246 (58%), Gaps = 10/246 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + +R+IV D ETTG +++N DR+IEIG VEL+++ +T TF + P R S A Sbjct: 1 MESQKMLREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---D 116 +HGI+D L DKP F+ + F +F +A + HNA FDVGF+N E R+ Sbjct: 60 FAVHGISDAMLADKPVFAEVVDAFLEFCG--DARLVIHNAPFDVGFLNMEFARLGPAAPK 117 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + ++DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ Sbjct: 118 AIALEDVVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL- 176 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236 GG Q + G E + + +P+ +R+T+ E HD +++LG NA+ Sbjct: 177 GGKQTSLGLSIAEPAETVALGALTDSGPVG--PRPIRSRLTEGERLRHDSFVESLGTNAV 234 Query: 237 WDRYIS 242 W Y+ Sbjct: 235 WREYME 240 >gi|296536098|ref|ZP_06898231.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC 49957] gi|296263574|gb|EFH10066.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC 49957] Length = 241 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 128/237 (54%), Gaps = 9/237 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG D DR++E+ AVE+++ T R F + + P R EA K+HG T Sbjct: 3 RALVLDTETTGFDPLTGDRVLEVAAVEIVNLVPTGRHFHMLIDPE-RDVPEEATKVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L KP F+ I DF + IAHNA FD GF++ EL++ LD +R++DT Sbjct: 62 REMLIGKPKFAEIAPAMLDFLGDD--PIIAHNAPFDFGFLDWELKKAGHKALDRARMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LC+RYGI S R+ H ALLD LL+ VY+++M GG Q Sbjct: 120 LALAKKRFPGLPNSLDALCRRYGIDNSMRTAHNALLDVQLLAQVYLELM-GGKQPGLELA 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISS 243 + R + + +P + ++ EL H + + K+ +W ++ + Sbjct: 179 S---RPAVSTPVVLQIDATPVARQPRPIQPSEAELAAHAAFLAKI-KDPLWAAFLPA 231 >gi|291616383|ref|YP_003519125.1| DnaQ [Pantoea ananatis LMG 20103] gi|291151413|gb|ADD75997.1| DnaQ [Pantoea ananatis LMG 20103] Length = 243 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 141/249 (56%), Gaps = 18/249 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIG VE+++ T F ++L P+ R Sbjct: 1 MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGGVEVINRRLTGNNFHMYLKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+FS I EF D+ + AE + HNA FD+GF++ E ++ + Sbjct: 59 DPEAFGVHGIADEFLLDKPTFSDIADEFLDYI--RGAELVIHNASFDIGFMDYEFGKLQR 116 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +I D+L++ARR P RN L++LC RY I S R+ HGALLD+ +L++V++ Sbjct: 117 GIEKTETFCKITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVFL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231 M G Q + F + E+R +++ + + I+ + EE+++H+ + + Sbjct: 177 TMTGG--QTSLSFSSEEERARQQQSEGIQRIAR-PSSGLRVVTASDEEVNQHESRLDLIM 233 Query: 232 --GKNAIWD 238 G + +W Sbjct: 234 KKGGSCLWR 242 >gi|161504623|ref|YP_001571735.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865970|gb|ABX22593.1| hypothetical protein SARI_02738 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 246 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 136/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + R ++ + T+ I + + + T EEL H+ + Q G + + Sbjct: 187 SMTFAIEGETQR--QQGEATIQRI-VRQASRLRVVFATDEELAAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|253689504|ref|YP_003018694.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756082|gb|ACT14158.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 245 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNMLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+++ I +F DF + AE + HNA FD+GF++ E + +N+D Sbjct: 66 HGISDEFLADKPTYADIVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + E + E +T+ I + + + EL H++ + + G + + Sbjct: 184 SLTFSME-GETQQKNENTETIQRI-VRPQSALKVLYADEAELVAHEQRLDLIAKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|116049766|ref|YP_791427.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa UCBPP-PA14] gi|115584987|gb|ABJ11002.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa UCBPP-PA14] Length = 246 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 132/242 (54%), Gaps = 12/242 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ RIIEIG VEL T R F V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121 T+E+LKDKP F + ++F++F + A+ I HNA FD+GFIN E + + D + Sbjct: 60 TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVSEYC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR +HP RN+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237 + E + R R EEL H + + K+A +W Sbjct: 178 SLAGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLW 237 Query: 238 DR 239 + Sbjct: 238 AQ 239 >gi|62178830|ref|YP_215247.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224582105|ref|YP_002635903.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62126463|gb|AAX64166.1| DNA polymerase III, epsilon subunit, 3-5 exonucleolytic proofreading function [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224466632|gb|ACN44462.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713281|gb|EFZ04852.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 246 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + R ++ + T+ I + + + T+EEL H+ + Q G + + Sbjct: 187 SMTFAMEGETQR--QQGEATIQRI-VRQASRLRVVFATEEELAAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|257095469|ref|YP_003169110.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047993|gb|ACV37181.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 238 Score = 234 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 95/240 (39%), Positives = 134/240 (55%), Gaps = 13/240 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL+ K RIIEI VE+ + TNR F +L P+ R AL +HGI Sbjct: 1 MRQIFLDTETTGLEHKFGHRIIEIACVEMRNRRLTNRHFHRYLNPD-RDIDAGALSVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 + EFL DKP F+ + EF DF + AE + HNA FDVGF+NAEL ++ P+D + Sbjct: 60 SREFLLDKPRFADVAVEFLDFV--RGAELVIHNAAFDVGFLNAELALLDMAPVDTVCHGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL +A+ HP +N+LN+LC+RYG+ SHR+ HGALLD+ +L++VY+ M G + Sbjct: 118 CDTLRMAKDLHPGKKNNLNALCERYGVDNSHRTLHGALLDAEILAEVYLAMTRGQESLIM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239 + +T S +R R + EEL EH + + + +W R Sbjct: 178 DLGDDNGGRLDTAGRTP---SPGRRQTLQVKRASPEELAEHQQVLTAIQEASKGKCLWLR 234 >gi|254295485|ref|YP_003061508.1| DNA polymerase III subunit epsilon [Hirschia baltica ATCC 49814] gi|254044016|gb|ACT60811.1| DNA polymerase III, epsilon subunit [Hirschia baltica ATCC 49814] Length = 233 Score = 234 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 144/239 (60%), Gaps = 10/239 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGL +K DRIIE+GAVE++D T R F + P R+ S + +++ GI Sbjct: 1 MREIVFDTETTGLSAKDGDRIIELGAVEIVDLLPTGREFHRLIYPE-RQVSEDTIRITGI 59 Query: 66 TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 TDE LK KP FS ++ EF DF +++ +AHNA+FD GF+N E++R+ R Sbjct: 60 TDEMLKGKPVFSDPSVYKEFLDFI--EDSPLVAHNAEFDRGFLNEEMRRVGGPDFPKERC 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL++AR K P + L++LCKR+ I+++ R H A++DS LL+ VY+++ GG +F Sbjct: 118 VDTLALAREKFPGASATLDALCKRFDISLAKRDVHTAVVDSQLLASVYLEL-RGGRAHSF 176 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 F E+ + + +R K L + +T+EE H I T + +W++ ++ Sbjct: 177 EF---ENEGQSDAEVAFKRTQRRQRPKKLRSFLTEEENAAHQSFIATFDETPVWNKILT 232 >gi|229590113|ref|YP_002872232.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens SBW25] gi|229361979|emb|CAY48879.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens SBW25] Length = 248 Score = 234 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 136/245 (55%), Gaps = 15/245 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R +V D ETTG+ RIIEIG VEL+ T R F V+L P+ R + A+ +HGI Sbjct: 3 IRSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPD-RDSDEGAIGVHGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121 TDEFLK KP F+ + EF++F N A+ I HNA FDVGFIN E + + D Sbjct: 62 TDEFLKGKPRFAEVADEFFEFIN--GAQLIIHNAAFDVGFINNEFALMGQTDRADISKHC 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + + Sbjct: 120 SILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSL 179 Query: 182 NFGFKTNEDRFFKEEKKTVP---NISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---- 234 + ++ E P R R ++++L EH ++ + K+ Sbjct: 180 SLAGNASDGTGSAEGSGNRPSEIRRLPADRKPTPIIRASEQDLAEHAARLEAIAKSAGAP 239 Query: 235 AIWDR 239 A+W + Sbjct: 240 ALWTQ 244 >gi|145639808|ref|ZP_01795410.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII] gi|145271176|gb|EDK11091.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII] Length = 256 Score = 234 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 93/258 (36%), Positives = 144/258 (55%), Gaps = 19/258 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G + + ++ R +E+ ++ + T +EL H + ++ Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKM 235 Query: 231 LGK----NAIWDRYISSN 244 + K N +WD+ +N Sbjct: 236 MNKKSGNNCLWDKRFGNN 253 >gi|320538891|ref|ZP_08038567.1| DNA polymerase III epsilon subunit [Serratia symbiotica str. Tucson] gi|320031051|gb|EFW13054.1| DNA polymerase III epsilon subunit [Serratia symbiotica str. Tucson] Length = 247 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 135/244 (55%), Gaps = 21/244 (8%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R + V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119 HGI+DEFL DKP+F I EF DF + E + HNA FD+GF++ E + + + Sbjct: 66 HGISDEFLADKPTFDQIADEFLDFI--RGGELVIHNAAFDIGFMDHEFRLLQQGIPKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTL---GKN 234 + F + + ++ + +I + R + +EL H+ + + G + Sbjct: 184 SMTFQMEGD-----TQQTNSAQDIQRIVRPAMAMKVVYASDKELAAHEARLDLVAQKGGS 238 Query: 235 AIWD 238 +W Sbjct: 239 CLWR 242 >gi|85713113|ref|ZP_01044147.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145] gi|85693061|gb|EAQ31025.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145] Length = 236 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 85/238 (35%), Positives = 136/238 (57%), Gaps = 12/238 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG++ RIIEIG VEL+D T F V++ P R EA+ +HGI Sbjct: 1 MRQIVLDTETTGINPDDGHRIIEIGCVELIDRKPTGNHFHVYINPE-RVVEDEAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122 T+E+L DKP F+ + F DF + ++ + HNA FDVG ++AE +R+ K D Sbjct: 60 TNEYLADKPVFAQVVDAFIDFI--KGSQLVIHNAPFDVGHMDAEFKRLGKMYGKTYDYCD 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++D+L +AR K P RN L++LCK + + S R HGALLD+ +L+DVY+ M G + ++ Sbjct: 118 VLDSLQLAREKRPGQRNSLDALCKAFHVDNSARELHGALLDAEILADVYLAMTGGQTALS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIW 237 + ++ +E + + ++ R + R T +E ++H + + + G +W Sbjct: 178 LHGQNQDNE--NQEPGAIAHQAIKNRPQLKVLRATADEEEQHQQRLAIVKSEGGACLW 233 >gi|114769767|ref|ZP_01447377.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [alpha proteobacterium HTCC2255] gi|114549472|gb|EAU52354.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [alpha proteobacterium HTCC2255] Length = 230 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 98/234 (41%), Positives = 146/234 (62%), Gaps = 7/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV+D ETTG D DRI+EIGAVEL + T R + ++ P R P A ++HG+ Sbjct: 1 MREIVWDTETTGFDPFAGDRIVEIGAVELNQHLPTGRVYHQYINPE-RDMPPGAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FLKD P FS+I +F DF +A IAHNAKFD+ FINAEL+ N + ++ +D Sbjct: 60 SIDFLKDFPVFSNIARDFIDFVG--DATLIAHNAKFDMKFINAELKNANLPQVPLNQSLD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR+K P ++N L++LC+R+ I S R KHGALLDS +L++VY++++ GG Q +F Sbjct: 118 TLEIARKKFPGAQNSLDALCRRFNIDNSSRQKHGALLDSEILAEVYLELV-GGRQPDFSL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + + L R K L + +T E H+ I++L +AIW++ Sbjct: 177 SLVGQSKLESTSDS--SYAALSRPKKLNSLVTDVEKKAHNDFIKSLCASAIWNK 228 >gi|114571517|ref|YP_758197.1| DNA polymerase III subunit epsilon [Maricaulis maris MCS10] gi|114341979|gb|ABI67259.1| DNA polymerase III, epsilon subunit [Maricaulis maris MCS10] Length = 230 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 93/234 (39%), Positives = 133/234 (56%), Gaps = 9/234 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD DR+ E+G VE++D+ T +TF ++ P R E +++ G+ Sbjct: 1 MREIVFDTETTGLDPNTGDRVTELGCVEIIDFIPTGKTFHAYVNPQ-RSVPKEVVEITGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T EFL DKP F + +F +F +A +AHNA FD GFIN EL R+ D R D Sbjct: 60 TTEFLADKPLFDEVGPQFVEFVG--DATMVAHNAPFDRGFINMELARLGLDIYPDDRFKD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T IAR K P S L++LCKR+ I++ R KHGAL+DS LL++VY+++M G ++ Sbjct: 118 TARIARAKFPGSYVSLDALCKRFDISLDTRDKHGALIDSLLLAEVYLELMGGRTR---AL 174 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + K P + R +PL R T E H + +G+NA+W + Sbjct: 175 DLSGQGSGGGGKVVFP--ARSPRAEPLTGRQTDSERAAHAAFVDEMGENALWKK 226 >gi|331007390|ref|ZP_08330576.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989] gi|330418798|gb|EGG93278.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989] Length = 239 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 94/242 (38%), Positives = 141/242 (58%), Gaps = 14/242 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ K RIIEIG VEL + T R + ++ P R+ +A+++HGI Sbjct: 1 MRQIVLDTETTGLEPSKGHRIIEIGCVELENRKLTGRHYHQYIQPE-REIEAQAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPS 121 T+E+LK KP+F I EF F + AE I HNA FDVGFIN EL + ++ Sbjct: 60 TNEYLKGKPTFVQIMDEFMAFVD--GAELIIHNAPFDVGFINNELAKYGDKKYQNITHYC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR+KHP +N+L++LCKRYG+ S R HGALLDS +L+DVY+ M G + Sbjct: 118 GVIDTLVMARQKHPGQKNNLDALCKRYGVDNSQRDLHGALLDSEILADVYLLMTGGQRAL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237 + ++ED + + ++ + + + EEL +H++ + + K +W Sbjct: 178 SLSSASSEDDSGSRQVTGIRRLAEV--PNLPIIQASPEELAQHEQKLAAIDKASQGQCVW 235 Query: 238 DR 239 + Sbjct: 236 LK 237 >gi|149908875|ref|ZP_01897535.1| DNA polymerase III subunit epsilon [Moritella sp. PE36] gi|149808149|gb|EDM68090.1| DNA polymerase III subunit epsilon [Moritella sp. PE36] Length = 245 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 94/239 (39%), Positives = 139/239 (58%), Gaps = 19/239 (7%) Query: 8 RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IVFD ETTG++ R+IEIG +EL++ T RT+ V++ P+ R PEA+ Sbjct: 14 RVIVFDTETTGMNMGAGGVHIGHRVIEIGCIELINRRPTGRTYHVYIKPD-RLVDPEAIA 72 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--- 118 +HGITDEFL+DKPSF++I EF F AE +AHNA FD F++ E + +NK Sbjct: 73 VHGITDEFLQDKPSFATIADEFIAFI--VGAELVAHNASFDTNFLDHEFRLLNKGLPATK 130 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + +I DTL+IA++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 131 EICKITDTLAIAKKLFPGKRNNLDVLCTRYGIDNSHRTLHGALLDAEILADVYLFMTGGQ 190 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 +++N + + + R + T +EL HD+ + + +A+W Sbjct: 191 TKLNLSQDSANSQGGGIRRVAA------SRAPLKVVQATDDELKAHDERL-GIVGDALW 242 >gi|188580742|ref|YP_001924187.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001] gi|179344240|gb|ACB79652.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001] Length = 236 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 143/240 (59%), Gaps = 10/240 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+IV D ETTG D+KN DR+IEIG VEL+++ +T + + + P R S A +HGI Sbjct: 2 LREIVLDTETTGTDAKNGDRLIEIGCVELINHVQTGKFYHQLINPQ-RAVSEGAFAVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122 +D L DKP F+ + F F +A + HNA FDVGF+N E R+ + Sbjct: 61 SDAMLADKPVFADVVDAFVAFCG--DARLVIHNAPFDVGFLNMEFARLGPAAPKAIPLED 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ GG Q + Sbjct: 119 VVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQTS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G E + + + +P+ +R+T+ E HD +++LG NA+W Y+ Sbjct: 178 LGLSIAEPTEAIAIESATDSGPVG--PRPMRSRLTESERLRHDSFVESLGTNAVWREYLE 235 >gi|212709216|ref|ZP_03317344.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM 30120] gi|212688128|gb|EEB47656.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM 30120] Length = 253 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 138/246 (56%), Gaps = 22/246 (8%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P+ R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL+DKP F+ I EF +F + AE + HNA FD+GF++ E +++N+ Sbjct: 66 HGISDEFLQDKPVFADIADEFIEFI--RGAELVIHNAPFDIGFMDYEFRKLNRGIPPTAE 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCTITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTLGKN--- 234 + F ++ + I ++R + EE+ EH+ + + K Sbjct: 184 SLAFSMESESSNTEQANA-----IQRIERPVSGLKVLYASDEEVAEHEARLDIVDKKGGK 238 Query: 235 -AIWDR 239 +W + Sbjct: 239 PCLWRQ 244 >gi|57239226|ref|YP_180362.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Welgevonden] gi|57161305|emb|CAH58228.1| DNA polymerase III, epsilon subunit [Ehrlichia ruminantium str. Welgevonden] Length = 242 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 94/239 (39%), Positives = 141/239 (58%), Gaps = 9/239 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M N +R+IV D ETTGLD+ DRIIE+G +EL+D T + F ++ P R A Sbjct: 1 MSYYNGIREIVLDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGIT + LKDKP FS I +F DF N+ + HNA FD+ FI EL +I K Sbjct: 60 TKIHGITVDMLKDKPKFSEIADKFLDFIG--NSVLVIHNAVFDIKFIKMELDKIQKSYNS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +++DTL +AR+K P + L++LCKR+ I++ R HGALLD+ LL VY+++M GG Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 Q + F+ N F + + S ++ P ++++EE+ +H ++ + KN IW+ Sbjct: 177 QRSLNFQDNSSMFQSSDYSHDVSRSYIE---PRLYKVSEEEIVKHKMLLEKI-KNPIWN 231 >gi|145631632|ref|ZP_01787397.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] gi|144982766|gb|EDJ90295.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] Length = 256 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 97/258 (37%), Positives = 145/258 (56%), Gaps = 19/258 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RSV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 P+A+K+HGITDE L DKP F I +F D+ N AE + HNA FDVGF++ E +++ Sbjct: 58 DPDAIKVHGITDEMLADKPEFKEIAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLDL 115 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 N D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQINFGFKTNE-DRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQT 230 M G + + ++ E D ++KT I + T +EL H + ++ Sbjct: 176 MTGGQTNLFDEEESVESDVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKM 235 Query: 231 LGK----NAIWDRYISSN 244 + K N +WD+ +N Sbjct: 236 MNKKSGNNCLWDKRFGNN 253 >gi|153840553|ref|ZP_01993220.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] gi|149745784|gb|EDM56914.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus AQ3810] Length = 229 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 94/238 (39%), Positives = 142/238 (59%), Gaps = 20/238 (8%) Query: 9 KIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +V D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R+ PEA+++ Sbjct: 1 IVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD-REIQPEAIQV 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLD 119 HGITDEFL DKP ++SI EF DF + AE +AHNA FD GF++ E ++++ D Sbjct: 60 HGITDEFLVDKPEYASIHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLDPIIGKTDD 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G + Sbjct: 118 YCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 177 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + F K+E + R R T +EL+ H K ++ + + IW Sbjct: 178 SLEF-------NANKQEGGVETIRRIEGRKALKVLRATADELEAHQKRLELVN-DCIW 227 >gi|37524935|ref|NP_928279.1| DNA polymerase III subunit epsilon [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784361|emb|CAE13238.1| DNA polymerase III epsilon chain [Photorhabdus luminescens subsp. laumondii TTO1] Length = 248 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 93/250 (37%), Positives = 139/250 (55%), Gaps = 21/250 (8%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA ++ Sbjct: 7 RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIQPD-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL+DKP F+ I EF +F + AE I HNA FD+GFI+ E ++N+D Sbjct: 66 HGISDEFLQDKPLFADIADEFIEFI--RGAELIIHNAPFDIGFIDYEFGKLNRDIPPTAD 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCKITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLDAEILSDVYLIMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL---GKN 234 + F + V I + R + T EEL H+ + + G + Sbjct: 184 SLAFSME-----GEIASGANVSEIQRITRPQMALKVIYATDEELAAHESRLDLVEKKGGS 238 Query: 235 AIWDRYISSN 244 +W + + Sbjct: 239 CLWRMNLGQS 248 >gi|161615575|ref|YP_001589540.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161364939|gb|ABX68707.1| hypothetical protein SPAB_03350 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 246 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 138/242 (57%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP F+ + EF D+ ++AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RDAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + R ++ + T+ I + + + ++EEL H+ + Q G + + Sbjct: 187 SMTFAMEGETQR--QQGEATIQRI-VRQASRLRVVFASEEELAAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|260583276|ref|ZP_05851052.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127] gi|260093683|gb|EEW77595.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127] Length = 256 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 91/258 (35%), Positives = 146/258 (56%), Gaps = 19/258 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P R++L++LC+R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G + + ++ R +E+ ++ + T +EL H + ++ Sbjct: 176 MTGGQTNLFDEEESVESEVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKM 235 Query: 231 LGK----NAIWDRYISSN 244 + K N +W++ +N Sbjct: 236 MNKKSGNNCLWEKRFGNN 253 >gi|288549963|ref|ZP_05968783.2| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC 35316] gi|288316782|gb|EFC55720.1| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC 35316] Length = 246 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF ++ + AE + HNA FD+GF++ E ++N+D + Sbjct: 69 HGIADEFLLDKPTFADVADEFLEYI--KGAELVIHNASFDIGFMDYEFSKLNRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++ARR P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKVTDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F E+ + + + + + + + EEL +H+ + Q G + + Sbjct: 187 SMKFSM---ENESQQSQGEAGIQRLVRQASRLRVVHASDEELLKHESRLDLVQKKGGSCM 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|238799153|ref|ZP_04642606.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969] gi|238716994|gb|EEQ08857.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969] Length = 259 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 139/249 (55%), Gaps = 17/249 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+F+ I EF +F + AE I HNA FD+GF++ E + + +D Sbjct: 71 HGISDEFLADKPTFAEITPEFLEFI--RGAELIIHNAAFDIGFMDYEFRMLQQDIPKTET 128 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + Sbjct: 129 FCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQT 188 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 ++F + D+ + + I+ ++EL H+ + + G + + Sbjct: 189 SLSFSME--GDQSQSDSSDDIQRITR-PASGLKIIYAAEDELAAHESRLDLVMKKGGSCL 245 Query: 237 WDRYISSNQ 245 W + S Sbjct: 246 WRMPLESED 254 >gi|227112969|ref|ZP_03826625.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 245 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNMLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+++ I +F DF + AE + HNA FD+GF++ E + +N+D Sbjct: 66 HGISDEFLADKPTYADIVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + E + E +T+ I + + + EL H++ + + G + + Sbjct: 184 SLTFSME-GETQQKSENTETIQRIVRPQSALTVLY-ADEAELLAHEQRLDLIAKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|261346344|ref|ZP_05973988.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM 4541] gi|282565658|gb|EFB71193.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM 4541] Length = 253 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 138/246 (56%), Gaps = 22/246 (8%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL+DKP F+ I EF +F + AE I HNA FD+GF++ E +++N+ Sbjct: 66 HGISDEFLQDKPVFAEIADEFIEFI--RGAELIIHNAPFDIGFMDYEFRKLNRGIPPTAE 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCSITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTLGKN--- 234 + F ++ + + I ++R + +E+ EH+ + + K Sbjct: 184 SLAFSMDSDSKNIQQANE-----IQRIQRPASGLKVLYASDQEIAEHEARLDIVDKKGGK 238 Query: 235 -AIWDR 239 +W + Sbjct: 239 PCLWRK 244 >gi|56460794|ref|YP_156075.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR] gi|56179804|gb|AAV82526.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR] Length = 235 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 134/238 (56%), Gaps = 13/238 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG+D K RIIEIG VEL++ T F V++ P R EA+++HGI Sbjct: 1 MRQVVLDTETTGIDPAKGHRIIEIGCVELINRKLTGNHFHVYINPE-RVVEQEAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T++FL DKP F+ + +F +F + ++ + HNA FDVGF++AE RI D Sbjct: 60 TNDFLTDKPVFAQVVQDFIEFI--KGSQLVIHNAPFDVGFMDAEFSRIRPAVGLTNDFCS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR P RN L++LC+ Y + S R HGALLD+ +L+DVY+ M G + +N Sbjct: 118 VLDTLQLAREMRPGQRNSLDALCRAYDVDNSARELHGALLDAEILADVYLMMTGGQTALN 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIW 237 +++ ++ V + + R R T +E H + + + G + +W Sbjct: 178 LASHGKDNQGGSQK---VEHQRITNRPALKVLRATADEEALHQERLARVKEEGGHCLW 232 >gi|85058570|ref|YP_454272.1| DNA polymerase III subunit epsilon [Sodalis glossinidius str. 'morsitans'] gi|84779090|dbj|BAE73867.1| DNA polymerase III epsilon subunit [Sodalis glossinidius str. 'morsitans'] Length = 252 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 138/248 (55%), Gaps = 15/248 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 + + R+IV D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R Sbjct: 1 MSTDITRQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHFHVYLKPD-RLVD 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK- 115 PEA +HGI+DEFL DKP+F+ + EF F + E + HNA FD+GF++ E +N+ Sbjct: 60 PEAFNVHGISDEFLADKPTFADVADEFLHFI--RGGELVIHNAPFDIGFMDYEFGMLNRG 117 Query: 116 --DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++ D+L +AR+ P RN L++LC RY I S R+ HGALLD+ +L+DV++ Sbjct: 118 IAKTDTFCKVTDSLLLARKMFPGKRNSLDALCDRYLIDNSKRTLHGALLDAEILADVFLL 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QT 230 M G + + F + +++ E + + ++ + EE+ H++ + Q Sbjct: 178 MTGGQTAMRFAMEGEQEQRDVGETVQIQRVQRVQ-TSLKVIYASDEEVVAHEQRLDLVQK 236 Query: 231 LGKNAIWD 238 G + +W Sbjct: 237 KGGSCVWR 244 >gi|58617240|ref|YP_196439.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Gardel] gi|58416852|emb|CAI27965.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Gardel] Length = 242 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 94/239 (39%), Positives = 141/239 (58%), Gaps = 9/239 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M N +R+IV D ETTGLD+ DRIIE+G +EL+D T + F ++ P R A Sbjct: 1 MSYYNGIREIVLDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGIT + LKDKP FS I +F DF N+ + HNA FD+ FI EL +I K Sbjct: 60 TKIHGITVDMLKDKPKFSEIADKFLDFIG--NSVLVIHNAVFDIKFIKMELDKIQKSYNS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +++DTL +AR+K P + L++LCKR+ I++ R HGALLD+ LL VY+++M GG Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 Q + F+ N F + + S ++ P ++++EE+ +H ++ + KN IW+ Sbjct: 177 QRSLNFQDNSGMFQSSDYSHDVSRSYIE---PRLYKVSEEEIVKHRMLLEKI-KNPIWN 231 >gi|104782586|ref|YP_609084.1| DNA polymerase III subunit epsilon [Pseudomonas entomophila L48] gi|95111573|emb|CAK16293.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudomonas entomophila L48] Length = 251 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 90/240 (37%), Positives = 129/240 (53%), Gaps = 9/240 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ R ++ D ETTG+ RIIEIG VE++ T R F V+L P+ R++ A Sbjct: 1 MEQQQDQRLVILDTETTGMPVGDGHRIIEIGCVEVMGRRLTGRHFHVYLQPD-RESDEGA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---- 115 + +HGITD FL KP F + EF++F + A + HNA FDVGFIN E + + Sbjct: 60 IGVHGITDAFLVGKPRFGDVAQEFFEFI--EGATLVIHNAAFDVGFINNEFALLGQHDRA 117 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D I+DTL +AR +HP RN L++LCKRYGI S R HGALLDS LL+DVY+ M Sbjct: 118 DISQHCSILDTLMMARSRHPGQRNSLDALCKRYGIDNSGRELHGALLDSELLADVYLAMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 G + ++ + + + + R +EEL H + + + K+A Sbjct: 178 GGQTSLSLAGDGAQSEDGQGGTGSEIR-RISGRAAGRVIMANEEELQAHAERLAAIAKSA 236 >gi|33591629|ref|NP_879273.1| DNA polymerase III subunit epsilon [Bordetella pertussis Tohama I] gi|33598340|ref|NP_885983.1| DNA polymerase III subunit epsilon [Bordetella parapertussis 12822] gi|33603250|ref|NP_890810.1| DNA polymerase III subunit epsilon [Bordetella bronchiseptica RB50] gi|33566898|emb|CAE39114.1| DNA polymerase III, epsilon chain [Bordetella parapertussis] gi|33571272|emb|CAE44737.1| DNA polymerase III, epsilon chain [Bordetella pertussis Tohama I] gi|33577374|emb|CAE34639.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica RB50] gi|332381049|gb|AEE65896.1| DNA polymerase III subunit epsilon [Bordetella pertussis CS] Length = 244 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 99/239 (41%), Positives = 134/239 (56%), Gaps = 15/239 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD + RI+EIG VE+++ T ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + +F F +AE IAHNA FDV F NAELQRI +DPL I Sbjct: 60 TTEFLADKPRFAEVAEQFLAFIA--DAELIAHNAAFDVKFFNAELQRIGRDPLNTHCENI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +D+L AR HP RN L++LC RYGI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 118 VDSLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 + S+L ++ EL EH +Q L G W Sbjct: 178 DVDDQGANANGALVLGKFDASVLT-----VLAASEAELAEHAAYLQALDKAVGGACAWR 231 >gi|327392834|dbj|BAK10256.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis AJ13355] Length = 243 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 90/249 (36%), Positives = 141/249 (56%), Gaps = 18/249 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F ++L P+ R Sbjct: 1 MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+FS I EF D+ + AE + HNA FD+GF++ E ++ + Sbjct: 59 DPEAFGVHGIADEFLLDKPTFSDIADEFLDYI--RGAELVIHNASFDIGFMDYEFGKLQR 116 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +I D+L++ARR P RN L++LC RY I S R+ HGALLD+ +L++V + Sbjct: 117 GIEKTETFCKITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVLL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231 M G Q + F + E+R +++ + + I+ + EE+++H+ + + Sbjct: 177 TMTGG--QTSLSFSSEEERARQQQSEGIQRIAR-PNSGLRVVTASDEEVNQHESRLDLIM 233 Query: 232 --GKNAIWD 238 G + +W Sbjct: 234 KKGGSCLWR 242 >gi|68248745|ref|YP_247857.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 86-028NP] gi|68056944|gb|AAX87197.1| DNA polymerase III, epsilon chain [Haemophilus influenzae 86-028NP] Length = 255 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 92/257 (35%), Positives = 143/257 (55%), Gaps = 18/257 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ + RN+L++LC+R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYLGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLK--RDKPLFTRITKEELDEHDKTIQTL 231 M G + + + ++KT I + T +EL H + ++ + Sbjct: 176 MTGGQTNLFDEESVESEVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMM 235 Query: 232 GK----NAIWDRYISSN 244 K N +W++ +N Sbjct: 236 NKKSGNNCLWEKRFGNN 252 >gi|290476066|ref|YP_003468963.1| DNA polymerase III subunit epsilon [Xenorhabdus bovienii SS-2004] gi|289175396|emb|CBJ82199.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Xenorhabdus bovienii SS-2004] Length = 249 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 90/242 (37%), Positives = 139/242 (57%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F +++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHLYIKPE-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL+DKP+F+ I EF +F + AE I HNA FD+GF++ E +++N+D Sbjct: 66 HGISDEFLQDKPTFADIADEFIEFI--RGAELIIHNATFDIGFMDYEFRKLNRDIPPTAD 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +AR+ P RN+LN+LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCTITDSLVLARQLFPGKRNNLNALCDRYQIDNSKRTLHGALLDAEILSDVYLTMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + + + + I+ + + EEL +H+ + + G + + Sbjct: 184 SLTFSME--GEISGGAQMAEIQKITRPQ-TGLKVIYASDEELLQHESRLDLVEKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|238755084|ref|ZP_04616431.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473] gi|238706644|gb|EEP99014.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473] Length = 254 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 92/251 (36%), Positives = 141/251 (56%), Gaps = 22/251 (8%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R Sbjct: 1 MIPT-PTRQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI+DEFL DKP+F+ I EF +F + AE + HNA FD+GF+ E + + + Sbjct: 59 DPEAYGVHGISDEFLLDKPTFADIAPEFIEFI--RGAELVIHNATFDIGFMYYEFRMLQQ 116 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +LS+VY+ Sbjct: 117 AIPNTDTFCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILSEVYL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTI-- 228 M G + ++F + ++++ + +I + R EELD H + + Sbjct: 177 AMTGGQTSLSFSMEGDQNQ-----SDSAADIQRIVRPTSGLTIIYANDEELDAHHQRLDL 231 Query: 229 -QTLGKNAIWD 238 Q G + +W Sbjct: 232 VQKKGGSCLWR 242 >gi|254448791|ref|ZP_05062248.1| DNA polymerase III, epsilon subunit [gamma proteobacterium HTCC5015] gi|198261632|gb|EDY85920.1| DNA polymerase III, epsilon subunit [gamma proteobacterium HTCC5015] Length = 239 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 99/242 (40%), Positives = 144/242 (59%), Gaps = 15/242 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGLD K RIIEIG VEL + T ++L P+ R+ A+++H I Sbjct: 1 MRQVVLDTETTGLDPKQGHRIIEIGCVELENRRLTGNKLHMYLQPD-REIDDGAIEVHQI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD---PLDPSR 122 T+EFL DKP F + EF DF + +E + HNA FDVGFI++EL ++++ D Sbjct: 60 TNEFLADKPRFGDVVDEFLDFV--KGSELVIHNAAFDVGFIDSELNLLDRNLGQTKDYCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL++AR+ HP RNDL+SLCKRY I SHR+ HGALLD+ +L+DVY+ M G Q++ Sbjct: 118 VLDTLAMARKMHPGKRNDLDSLCKRYDINNSHRTLHGALLDAEILADVYLMMTGG--QVS 175 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-----AIW 237 GF + + E+ IS + + T + EE + H+K + L +W Sbjct: 176 LGFDAKQKQEADAEQGGAHRISQDRAPLQVIT-ASPEEQERHEKLLANLRGKDGDQPCLW 234 Query: 238 DR 239 D+ Sbjct: 235 DQ 236 >gi|117920808|ref|YP_870000.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3] gi|117613140|gb|ABK48594.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3] Length = 242 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 131/248 (52%), Gaps = 20/248 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ RIIEIG VE+++ T R F ++ P G+ Sbjct: 3 IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QR 112 PEA+ +HGITDE + ++P F I EF DF + AE +AHNA FDV F++ E Q Sbjct: 62 DPEAIAVHGITDERVANEPRFHQIAQEFIDFIS--GAEIVAHNANFDVSFMDHEFSLLQP 119 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + I+D+L IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 LGPKTSEICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G ++ N +E + + + +EL H+K + + Sbjct: 180 AMTGGQTKFNLSNDEV-----GQEAGGIQRFDPASLN-LKVISASADELVMHEKRLDLVA 233 Query: 233 K--NAIWD 238 K +W Sbjct: 234 KSGKCLWR 241 >gi|144899676|emb|CAM76540.1| DNA polymerase III, epsilon subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 228 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 92/234 (39%), Positives = 136/234 (58%), Gaps = 10/234 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D RI+EIG VEL ++ T + + ++ P R EA K+HG+ Sbjct: 1 MREIVLDTETTGFDPLTGHRIVEIGCVELFNHLPTGKVYHQYVNPE-RDMPEEAFKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +++FL DKP F+ I ++F DF +A + HNA+FD+ FINAEL R+ PL SR ID Sbjct: 60 SEQFLSDKPVFAEIVADFMDFIG--DAILVIHNAEFDMRFINAELSRLGFQPLPMSRSID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+++AR+K P ++ +L++LC+R+ I +HRS HGALLDS LL++VY++++ GG Q Sbjct: 118 TVAMARKKFPGAQANLDALCRRFEIDNTHRSFHGALLDSELLAEVYLQLI-GGRQPGLEL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + R EEL+ H + L K A+W R Sbjct: 177 GLLGGNGKGGGGPVLERVKREPRPHAALP----EELEAHAAFVGKL-KKALWLR 225 >gi|241761459|ref|ZP_04759547.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374366|gb|EER63863.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 234 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 132/239 (55%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGL DR++EIG VEL++ +T +F + P R A +HG+ Sbjct: 1 MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPE-RPMDAVAESIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D FL DKP F+ E F + +AHNA FD GF+N EL + + +R++D Sbjct: 60 SDAFLADKPLFADKAQELLSFIKL--SPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR KHP +++ L++LC RYGI SHR KHGALLD+ LL+ +Y+++ GG QI Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELT-GGRQIGMAL 176 Query: 186 KTNEDRFFKEEK-----KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 N + +P +KR +P + +EL H I + N +W R Sbjct: 177 DDNNGQSDGRLSVPNTVSGLPRNKKVKR-QPRPHEASPQELLRHGAFIDKIS-NPVWRR 233 >gi|113868435|ref|YP_726924.1| DNA polymerase III subunit epsilon [Ralstonia eutropha H16] gi|113527211|emb|CAJ93556.1| DNA polymerase III epsilon subunit [Ralstonia eutropha H16] Length = 246 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 127/245 (51%), Gaps = 15/245 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL + DR+IEIG VEL++ T R ++ P R A+ +HGI Sbjct: 4 MRQIVLDTETTGLSAATGDRLIEIGCVELMNRRLTGRHLHFYVNPE-RDIDEGAIAVHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + ++ +F Q+AE I HNA FD+GF++ E Q + P + Sbjct: 63 TVEFLADKPRFAEVVNDIREFI--QDAELIIHNAPFDLGFLDMEFQLLGLPPFRQHAGNV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL AR+ P RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M G + Sbjct: 121 IDTLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRGQDSLVI 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239 + + L R R T EE H ++ L G +W Sbjct: 181 DMHDS-----TAGHGGAVAAADLSRLALPVLRATDEEQQAHLALLKGLDKASGGKTVWQE 235 Query: 240 YISSN 244 ++ Sbjct: 236 APAAE 240 >gi|88703294|ref|ZP_01101010.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71] gi|88702008|gb|EAQ99111.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71] Length = 240 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 135/240 (56%), Gaps = 12/240 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ RIIEIG VE+ + T R F ++ P R A+++HGI Sbjct: 1 MRQIVLDTETTGLEVSQGHRIIEIGCVEMENRQLTGRHFHRYINPE-RDIDAGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122 T FL DKP FS++ +F DF + AE I HNA FD+GF+++EL R + L Sbjct: 60 TATFLADKPVFSAVAKDFIDFVD--GAELIIHNAPFDIGFLDSELSRWDASALPLAQRCD 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I DTL +AR +HP RN L++LC RYG+ S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 ITDTLIMARSRHPGQRNSLDALCGRYGVDNSSRELHGALLDAEILADVYLTMTGGQTALA 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWDR 239 G ++++ + R + + + EEL H+ + ++ G +W + Sbjct: 178 LGGNDDDNQGRARVRGL--RRLPADRVRLPVIQPSDEELAAHEGQLDSIAAAGAEPLWRQ 235 >gi|254240209|ref|ZP_04933531.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192] gi|126193587|gb|EAZ57650.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192] Length = 246 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 132/242 (54%), Gaps = 12/242 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ RIIEIG VEL T R F V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRHLTGRHFHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121 T+E+LKDKP F + ++F++F + A+ I HNA FD+GFIN E + + D + Sbjct: 60 TNEYLKDKPRFREVANDFFEFI--RGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR +HP RN+L++LCKRYG+ S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237 + E + R R EEL H + + K+A +W Sbjct: 178 SLAGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLW 237 Query: 238 DR 239 + Sbjct: 238 AQ 239 >gi|317047021|ref|YP_004114669.1| DNA polymerase III subunit epsilon [Pantoea sp. At-9b] gi|316948638|gb|ADU68113.1| DNA polymerase III, epsilon subunit [Pantoea sp. At-9b] Length = 243 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 137/249 (55%), Gaps = 18/249 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F ++L P+ R Sbjct: 1 MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHIYLKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKPSFS I EF D+ + AE + HNA FD+GF++ E + + Sbjct: 59 DPEAFGVHGIADEFLADKPSFSDIADEFLDYI--RGAELVIHNASFDIGFMDYEFAMLKR 116 Query: 116 D---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D ++ D+L++AR+ P RN L++LC R I S R+ HGALLD+ +L++V++ Sbjct: 117 DIGKTDTFCQVTDSLAMARKMFPGKRNSLDALCSRLEIDNSKRTLHGALLDAEILAEVFL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231 + G + + F ++ ++ + + + + I + + EE H+ + + Sbjct: 177 TLTGGQTSLAFSMES--EQSNQVDGENIQRI-VRPASGLRVVSASDEECLAHESRLDLVM 233 Query: 232 --GKNAIWD 238 G + +W Sbjct: 234 KKGGSCLWR 242 >gi|90414055|ref|ZP_01222038.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] gi|90324850|gb|EAS41378.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK] Length = 246 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 89/250 (35%), Positives = 140/250 (56%), Gaps = 20/250 (8%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IV D ETTG++ + IIEIGAVE+++ T +F V++ P+ R Sbjct: 5 MKATNQRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTGNSFHVYIKPD-RTIE 63 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114 EA+ +HGITDEFL KP + + EF +F + AE +AHNA FDVGF++ E +++N Sbjct: 64 VEAIGVHGITDEFLIGKPVYKEVHDEFLEFI--KGAELVAHNAPFDVGFMDYEFRKLNPN 121 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 122 IGKTEDFCKVTDTLAMAKKIFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLL 181 Query: 174 MMVGGSQINFGFKTN--EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 M G + + + + E K+ P LLK + +E++ H+ + + Sbjct: 182 MTGGQTSLALSAEREDRDAGTGSEIKRIAPGRKLLK-----VLHASADEIEAHESRLDII 236 Query: 232 GKNA--IWDR 239 K +W + Sbjct: 237 SKKGDVMWRQ 246 >gi|24374102|ref|NP_718145.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] gi|24348589|gb|AAN55589.1|AE015697_11 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] Length = 242 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 135/248 (54%), Gaps = 20/248 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ RIIEIG VE+++ T R + ++ P G+ Sbjct: 3 IISNASRQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QR 112 PEA+ +HGITDE + ++P F I EF DF + AE +AHNA FDV F++ E Q Sbjct: 62 DPEAIAVHGITDERVANEPRFHQIAQEFIDFIS--GAEIVAHNANFDVSFMDHEFSLLQP 119 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + D I+D+L IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ Sbjct: 120 LGPKTRDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G ++ N +NE+ +E + + + +EL H+K + + Sbjct: 180 SMTGGQTKFNL---SNEE--VGQEGGGIQRFDPTSLN-LKVICASADELVMHEKRLDLVA 233 Query: 233 K--NAIWD 238 K +W Sbjct: 234 KSGKCLWR 241 >gi|254429095|ref|ZP_05042802.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881] gi|196195264|gb|EDX90223.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881] Length = 246 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 130/232 (56%), Gaps = 8/232 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGL+ R+IEIG VE+ + T ++L P R+ AL +HGI Sbjct: 1 MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNNLHLYLNPE-REIDAGALAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 + EFL DKP+F + EF F + AE + HNA FDVGF+N EL+R+ Sbjct: 60 STEFLADKPTFDKVVDEFLAFVD--GAELVIHNAPFDVGFLNHELRRLGARYGTIEQRCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR+KHP +N+L++LC+RY + HR HGALLD+ +L+DVY+ M G ++++ Sbjct: 118 VLDTLVMARQKHPGQKNNLDALCRRYFVENGHRELHGALLDAEILADVYLAMTGGQTRLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 G ++ + + +S R R ++ E+ H+ + + Sbjct: 178 LGGNDGSEQGGDATAEAIRRLS-ADRPALAVVRPSESEMQRHNDKLTAIAGK 228 >gi|260753374|ref|YP_003226267.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552737|gb|ACV75683.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 234 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 132/239 (55%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGL DR++EIG VEL++ +T +F + P R A +HG+ Sbjct: 1 MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPQ-RPMDAVAESIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D FL DKP F+ E F + +AHNA FD GF+N EL + + +R++D Sbjct: 60 SDAFLADKPLFADKAQELLSFIKL--SPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR KHP +++ L++LC RYGI SHR KHGALLD+ LL+ +Y+++ GG QI Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELT-GGRQIGMAL 176 Query: 186 KTNEDRFFKEEK-----KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 N + +P +KR +P + +EL H I + N +W R Sbjct: 177 DDNNGQSDGRLSVPNTVSGLPRNKKVKR-QPRPHEASPQELLRHGAFIDKIS-NPVWRR 233 >gi|307545281|ref|YP_003897760.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581] gi|307217305|emb|CBV42575.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581] Length = 255 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 131/245 (53%), Gaps = 16/245 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTG+D + R+IEIGAVE+++ T T+ ++ P R EA+++HGI Sbjct: 1 MRQIILDTETTGIDPREGHRLIEIGAVEMVNRRLTGNTYHQYINPE-RDIEAEAVEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--------KDP 117 T+E + D+P F+ + FW F + AE + HNA FDVGFI+ E R+N Sbjct: 60 TNEKVADEPVFAEVADAFWAFI--KGAELVIHNAPFDVGFIDHEFARLNEARGGPVLGPV 117 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + RI+DTL +AR KHP RN+L++LCKRY I HR HGALLD+ +L+DVY+ M G Sbjct: 118 AEHCRILDTLQLARDKHPGQRNNLDALCKRYEIQNGHRVLHGALLDAEILADVYLAMTGG 177 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE-ELDEHDKTIQTL---GK 233 + ++ +D + + L L R E E H + + Sbjct: 178 QTALSLDASAGDDTEQADNGGGLRIRRLSLSPGQLRVRQPDEAEWQAHRDKLAGIREASG 237 Query: 234 NAIWD 238 WD Sbjct: 238 ECRWD 242 >gi|307257347|ref|ZP_07539117.1| hypothetical protein appser10_13450 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864197|gb|EFM96110.1| hypothetical protein appser10_13450 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 248 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 88/241 (36%), Positives = 134/241 (55%), Gaps = 16/241 (6%) Query: 11 VFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ EA+K+HGI Sbjct: 2 VLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122 T+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + P + Sbjct: 61 TNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCS 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ MM GG Sbjct: 119 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLAL 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 G + + I+ + + +++EE H++ ++ + K N IW Sbjct: 178 LGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWM 237 Query: 239 R 239 R Sbjct: 238 R 238 >gi|295096912|emb|CBK86002.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 246 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 138/242 (57%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL +KP+F+ + EF D+ + AE + HNA FD+GF++ E ++N+D + Sbjct: 69 HGIADEFLLNKPTFADVADEFLDYI--RGAELVIHNASFDIGFMDYEFSKLNRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + I + + ++ + EEL H+ + Q G + + Sbjct: 187 SMKFSMENESQQ--TRDEGGIQRI-VRQANRLRVVLASDEELMNHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|157369157|ref|YP_001477146.1| DNA polymerase III subunit epsilon [Serratia proteamaculans 568] gi|157320921|gb|ABV40018.1| DNA polymerase III, epsilon subunit [Serratia proteamaculans 568] Length = 246 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 133/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGA+E+++ T R + V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGALEVINRRPTGRHYHVYIKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+F+ I EF DF + E + HNA FD+GF++ E + + + Sbjct: 66 HGISDEFLADKPTFAQIADEFIDFI--RGGELVIHNAAFDIGFMDHEFRMLQQGIPKTDT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMTGG-- 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 Q + F+ D + + I + + EE+ H+ + + G + + Sbjct: 182 QTSMAFQMEGDTQNSNSTQDIQRI-VRPATTMKVVYASDEEVVAHEARLDLVAKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|307132179|ref|YP_003884195.1| DNA polymerase III subunit epsilon [Dickeya dadantii 3937] gi|306529708|gb|ADM99638.1| DNA polymerase III epsilon subunit [Dickeya dadantii 3937] Length = 244 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 136/242 (56%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYLRPD-RLVDPEAYNV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP++ + +F DF + AE + HNA FD+GF++ E + + +D Sbjct: 66 HGISDEFLADKPTYGDVVDDFLDFI--RGAELVIHNATFDIGFMDYEFRLLKRDIPKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCTITDSLQMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + + + + + L+ + EEL H++ + + G + + Sbjct: 184 SLAFSMEGDTQQQTAQTETIQRIARPASALAVLY--ASDEELAAHEQRLDLIMKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|238893208|ref|YP_002917942.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae NTUH-K2044] gi|238545524|dbj|BAH61875.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 246 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++N+ Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNASFDIGFMDYEFSKLNRGIGKTET 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + E + + + EEL H+ + Q G + + Sbjct: 187 SMAFSMEGESQQQAGEMGIQR---VVRAGSQLRVVYASDEELANHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|148825595|ref|YP_001290348.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE] gi|229847255|ref|ZP_04467358.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1] gi|148715755|gb|ABQ97965.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE] gi|229809798|gb|EEP45521.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1] Length = 256 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 94/258 (36%), Positives = 145/258 (56%), Gaps = 19/258 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDLAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G + + ++ R +E+ ++ + T +EL H + ++ Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKM 235 Query: 231 LGK----NAIWDRYISSN 244 L K N +WD+ +N Sbjct: 236 LNKKSGNNCLWDKRFGNN 253 >gi|94502173|ref|ZP_01308671.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65] gi|94425698|gb|EAT10708.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65] Length = 237 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 90/231 (38%), Positives = 135/231 (58%), Gaps = 7/231 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR++V D ETTG+ RIIEIG VEL+ T R + ++ P R+ PEA+++HGIT Sbjct: 1 MRQVVLDTETTGI-GDGHRIIEIGCVELVGRKLTGRHYHQYINPQ-REVDPEAMEVHGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRII 124 DEFL DKP F+ + +EF DF N AE + HNA FDVGF++ E +++ P + ++ Sbjct: 59 DEFLADKPVFAQVANEFLDFIN--GAELVIHNAPFDVGFMDMEFAKLSNFPKTAEVCGVL 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR+ +P RN L++LC+R GI SHR HGALLDS +L+DVY+ M G + ++ Sbjct: 117 DTLTLARKMYPGQRNSLDALCRRLGIDNSHRELHGALLDSEILADVYLLMTGGQTALSLA 176 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + E V + + +T +E +H + ++ L A Sbjct: 177 SEDASTEGSHELSVKV-LVDQSQVANLPSWGVTDDEARQHQEYLELLATKA 226 >gi|186475632|ref|YP_001857102.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815] gi|184192091|gb|ACC70056.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815] Length = 249 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 137/248 (55%), Gaps = 18/248 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+++ DRIIEIG VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQIILDTETTGLNARTGDRIIEIGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F+ I DF Q+AE I HNA FD+GF++AE + P + Sbjct: 60 TTEFLSDKPKFAEIADTLRDFI--QDAELIIHNAPFDIGFLDAEFALLGLPPFSQYCGEV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A+ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 118 IDTLVRAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177 Query: 184 GF--KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 +T D ++ + + L + T +EL EH+ + L K+ ++W Sbjct: 178 DMLGETAADDAGGAKRVMLDTLEL------IVLAATDDELAEHEALLDGLDKSLKGTSVW 231 Query: 238 DRYISSNQ 245 + ++ Sbjct: 232 RTHPTTED 239 >gi|254514367|ref|ZP_05126428.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3] gi|219676610|gb|EED32975.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3] Length = 240 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 91/239 (38%), Positives = 132/239 (55%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S+ RIIEIG VEL + T R F ++ P R A+++HGI Sbjct: 1 MRQIVLDTETTGLEVSQGHRIIEIGCVELQNRLLTGRHFHRYINPE-RDIDAGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122 T FL DKP FS++ +F DF + AE I HNA FD+GF+++EL RI+ L Sbjct: 60 TATFLADKPVFSAVAKDFVDFVD--GAELIIHNAPFDIGFLDSELSRIDPAALPLAQRCE 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I DTL +AR +HP RN L++LC+RY + S R HGALLD+ +L+DVY+ M G + + Sbjct: 118 ITDTLVMARSRHPGQRNSLDALCQRYAVDNSSRDLHGALLDAEILADVYLTMTGGQTALA 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238 G + + + + R + + EL H+ + ++ G +W Sbjct: 178 LGGDDGDSQGRTRPRGLIRL--PENRPRLPVIEPSDSELAAHEAQLDSIAAAGTEPLWR 234 >gi|255019824|ref|ZP_05291900.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] gi|254970753|gb|EET28239.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] Length = 243 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 97/246 (39%), Positives = 143/246 (58%), Gaps = 11/246 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG+D + R+IEIGAVEL+D T +Q +L P GR + PEAL++HGI Sbjct: 1 MRQVVLDTETTGIDPRQGHRVIEIGAVELVDREITEGRYQQYLNP-GRSSDPEALRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL D+P F+ I +F F +AE I HNA FD+ F+NAEL+R+ + L + + D Sbjct: 60 RDDFLADQPDFADIVEDFLAFLG--DAELIIHNAPFDLAFLNAELERVGRPAL-QNPVRD 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG--GSQINF 183 TL ARR+HP +NDL++LC+RYG+ S R +HGALLD +L++VY++M G G ++ Sbjct: 117 TLVEARRRHPGQKNDLDALCRRYGVDNSRRQQHGALLDCEILAEVYLRMSGGQLGMRLAA 176 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + +E + P + + R EL H+ ++ LG A+W Sbjct: 177 DREAQGPSVAEEGQAGAPFQAHAQAADRRRPLRLRRADAAELAAHEAYLRGLGGKALWRE 236 Query: 240 YISSNQ 245 Q Sbjct: 237 ESPGEQ 242 >gi|311280820|ref|YP_003943051.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1] gi|308750015|gb|ADO49767.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1] Length = 246 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 133/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFNV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF ++ + AE + HNA FD+GF++ E ++N+ + Sbjct: 69 HGIADEFLLDKPTFADVCDEFLEYI--RGAELVIHNASFDIGFMDYEFSKLNRGIAKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F E + + + + K + EEL H+ + Q G + + Sbjct: 187 SMAFAM---EGEAQQTQGEAGIQRVVRAASKLRVVLASDEELMAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|54310042|ref|YP_131062.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9] gi|46914481|emb|CAG21260.1| Putative DNA polymerase III, epsilon subunit [Photobacterium profundum SS9] Length = 246 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 140/248 (56%), Gaps = 16/248 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R IV D ETTG++ + IIEIGAVE+++ T +F V++ P+ R Sbjct: 5 MKATNQRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTGNSFHVYIKPD-RTIE 63 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114 EA+ +HGITDEFL KP + + EF +F + AE +AHNA FDVGF++ E +++N Sbjct: 64 VEAIGVHGITDEFLIGKPVYKEVHDEFLEFI--KGAELVAHNAPFDVGFMDYEFRKLNPN 121 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D ++ DTL++A++ P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ Sbjct: 122 IGKTEDFCKVTDTLAMAKKIFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLL 181 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G + + + EDR E + S R + +E++ H+ + + K Sbjct: 182 MTGGQTSLALSAER-EDRDAGTESEIKRIAS--GRKLLKVLHASADEIEAHESRLDIISK 238 Query: 234 NA--IWDR 239 + +W + Sbjct: 239 KSDVMWRQ 246 >gi|187924850|ref|YP_001896492.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN] gi|187716044|gb|ACD17268.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans PsJN] Length = 244 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 134/239 (56%), Gaps = 14/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VE+++ T ++ P R++ P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVEMVNRRLTGNNLHFYINPE-RESDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F+ I +F DF Q+A+ I HNA FD+GF++AE + P+ I Sbjct: 60 TTEFLSDKPKFAEIADQFRDFI--QDADLIIHNAPFDIGFLDAEFALLGLPPVKTYCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 P ++L D + + +EL H + L K ++W Sbjct: 178 DM---LGESHAGGDAHAPRVALSSLD-LIVVTASDDELAAHQAVLDGLDKAIKGTSVWR 232 >gi|296101380|ref|YP_003611526.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055839|gb|ADF60577.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 243 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 135/242 (55%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++ +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFLDYI--KGAELVIHNASFDIGFMDYEFSKLQRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I + R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F E+ + + + + + + + EEL H+ + Q G + + Sbjct: 184 SMKFSM---ENESQQTQGEAGIQRVVRQASRLRVVLASDEELLNHESRLDLVQKKGGSCM 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|46201693|ref|ZP_00054536.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 230 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 92/234 (39%), Positives = 133/234 (56%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D R++EIG VEL ++ T F + P R EA K+HG+ Sbjct: 1 MREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGEVFHRYCNPE-RDMPEEAFKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+ I ++F +F +A + HNA+FD+ FINAEL R+ L SR ID Sbjct: 60 SVEFLSDKPLFAEIVADFLEFIG--DAPLVIHNAEFDMRFINAELARLGFPALPMSRSID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +AR+K P ++ +L++LC+R+ I +HR+KHGALLDS LL++VY++++ GG Q Sbjct: 118 TVMMARKKFPGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLI-GGRQPGLEL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + +P T+EE H + L KNA+W R Sbjct: 177 GGGKGNGAGSAASASTQEVKRDFREPRPHGPTEEETAAHTAFVAKL-KNAVWLR 229 >gi|293392715|ref|ZP_06637034.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera DSM 4582] gi|291424832|gb|EFE98042.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera DSM 4582] Length = 245 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 133/249 (53%), Gaps = 18/249 (7%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 + R+IV D ETTG++ + RIIEIGAVE+++ T R + V++ P+ R Sbjct: 1 MITTPTRQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLVD 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA +HGI+DEFL DKP+F I EF +F + E + HNA FD+GF++ E + + +D Sbjct: 60 PEAYGVHGISDEFLADKPTFDQIADEFIEFI--RGGELVIHNAAFDIGFMDHEFRMLQQD 117 Query: 117 PLDPSRII---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ Sbjct: 118 IPKTETFCAITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLA 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-- 231 M G Q F+ D + + + I+ + +E+ H+ + + Sbjct: 178 MTGG--QTTMAFQMEGDTQQSDSTQDIQRIAR-PATSMKVIYASDDEVVAHESRLDLVAK 234 Query: 232 --GKNAIWD 238 G N +W Sbjct: 235 KGGGNCLWR 243 >gi|307250533|ref|ZP_07532477.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857426|gb|EFM89538.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 248 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 88/241 (36%), Positives = 134/241 (55%), Gaps = 16/241 (6%) Query: 11 VFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 V D ETTG+ IIEIGAVE+++ T RTF V++ P R+ EA+K+HGI Sbjct: 2 VLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVEEEAIKVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122 T+EFL+DKP F+ + EF +F + AE I HNA FDV F++ E + P + Sbjct: 61 TNEFLQDKPVFAEVADEFIEFI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCS 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ MM GG Sbjct: 119 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLAL 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 G + + I+ + + +++EE H++ ++ + K N IW Sbjct: 178 LGEEDASANHENIADLGLGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWM 237 Query: 239 R 239 R Sbjct: 238 R 238 >gi|331019245|gb|EGH99301.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 259 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 98/257 (38%), Positives = 141/257 (54%), Gaps = 16/257 (6%) Query: 1 MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M +N R IV D ETTG+ RI+EIG VEL+ T R F V+L P+ R++ Sbjct: 1 MTVQNLDNRSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115 A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + Sbjct: 60 AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDK 117 Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D +I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M Sbjct: 118 ADITRHCKILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKT-VPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231 G + ++ ++ E I L D+ R ++ EL EH+ + T+ Sbjct: 178 TGGQTSLSLAGNASDGNGSAEGSGNRGSEIRRLPADRKPCRVIRASESELAEHEVRMTTI 237 Query: 232 GKN----AIWDRYISSN 244 K A+W + + + Sbjct: 238 AKATGAPALWVQMLEAG 254 >gi|58579186|ref|YP_197398.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Welgevonden] gi|58417812|emb|CAI27016.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str. Welgevonden] Length = 242 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 93/239 (38%), Positives = 140/239 (58%), Gaps = 9/239 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M N +R+I D ETTGLD+ DRIIE+G +EL+D T + F ++ P R A Sbjct: 1 MSYYNGIREIALDTETTGLDADGGDRIIEMGCIELIDRVFTGKVFHEYINPE-RDIPYYA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGIT + LKDKP FS I +F DF N+ + HNA FD+ FI EL +I K Sbjct: 60 TKIHGITVDMLKDKPKFSEIADKFLDFIG--NSVLVIHNAVFDIKFIKMELDKIQKSYNS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +++DTL +AR+K P + L++LCKR+ I++ R HGALLD+ LL VY+++M GG Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCKRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 Q + F+ N F + + S ++ P ++++EE+ +H ++ + KN IW+ Sbjct: 177 QRSLNFQDNSSMFQSSDYSHDVSRSYIE---PRLYKVSEEEIVKHKMLLEKI-KNPIWN 231 >gi|240138045|ref|YP_002962517.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] gi|240008014|gb|ACS39240.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] Length = 236 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 143/240 (59%), Gaps = 10/240 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+IV D ETTG +++N DR+IEIG VEL+++ +T TF + P R S A +HGI Sbjct: 2 LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122 +D L DKP F+ + F +F +A + HNA FDVGF+N E R+ + Sbjct: 61 SDAMLADKPVFAEVVDAFLEFCG--DARLVIHNAPFDVGFLNMEFARLGPAAPKAIALED 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ GG Q + Sbjct: 119 VVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQTS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G E + + +P+ +R+T+ E HD +++LG NA+W Y+ Sbjct: 178 LGLSIAEPAETVALGALTDSGPVG--PRPIRSRLTEGERLRHDSFVESLGTNAVWREYME 235 >gi|88857806|ref|ZP_01132448.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudoalteromonas tunicata D2] gi|88819423|gb|EAR29236.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Pseudoalteromonas tunicata D2] Length = 252 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 92/237 (38%), Positives = 135/237 (56%), Gaps = 12/237 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+D K RIIEIG VEL++ T F V++ P R EA+ +HGIT Sbjct: 19 RQIVLDTETTGIDPKLGHRIIEIGCVELINRRFTGNNFHVYINPE-RDIEDEAIDVHGIT 77 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPLDPSRI 123 ++FL+DKP F I EF+D+ Q AE + HNA FDVGF+++E QR+ ++ Sbjct: 78 NQFLRDKPKFHHIAQEFFDYI--QGAELVIHNAAFDVGFMDSEFQRLRTGYPKTAQFCQV 135 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR HP +N+L++LC+RY I R+ HGALLDS +LSDVY+ M G +N Sbjct: 136 LDTLKMARELHPGQKNNLDALCRRYNIDNGKRTMHGALLDSEILSDVYLAMTGGQVSLNL 195 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIW 237 +T + +++ + + S R T +E H + + + K +W Sbjct: 196 NTQTVGEENAQKQGEIIRLNS--DRAPLNIVYATADENQAHIERLALVEKKSSQCLW 250 >gi|145633563|ref|ZP_01789291.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655] gi|144985769|gb|EDJ92383.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655] Length = 256 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 94/258 (36%), Positives = 144/258 (55%), Gaps = 19/258 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKDLAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 174 MMVGGSQI---NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G + + ++ R +E+ ++ + T +EL H + ++ Sbjct: 176 MTGGQTNLFDEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKM 235 Query: 231 LGK----NAIWDRYISSN 244 L K N +WD+ +N Sbjct: 236 LNKKSGNNCLWDKRFGNN 253 >gi|157147189|ref|YP_001454508.1| DNA polymerase III subunit epsilon [Citrobacter koseri ATCC BAA-895] gi|157084394|gb|ABV14072.1| hypothetical protein CKO_02968 [Citrobacter koseri ATCC BAA-895] Length = 246 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 139/242 (57%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---D 119 HGI DEFL DKP F+ + +F ++ + AE + HNA FD+GF++ E ++++ + Sbjct: 69 HGIADEFLLDKPVFADVVDDFLEYI--RGAELVIHNASFDIGFMDYEFAKLSRGIPKTSE 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++ARR P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKITDSLALARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + ++ + T+ I + + K T EEL H+ + Q G + + Sbjct: 187 SMAFSME--GETQQQQGEATIQRI-VRQASKLRVVLATDEELMAHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|152968805|ref|YP_001333914.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953654|gb|ABR75684.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 243 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++N+ Sbjct: 66 HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFSKLNRGIGKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + E + + + EEL H+ + Q G + + Sbjct: 184 SMAFSMEGESQQQAGEMGIQR---VVRAGSQLRVVYASDEELANHESRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|323157950|gb|EFZ44052.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa14] Length = 246 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 135/236 (57%), Gaps = 14/236 (5%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + F + + ++ + T+ I + + K T EEL H+ + + K A Sbjct: 184 SMAFAME--GETQQQQGEATIQRI-VRQASKLRVVFATDEELAAHEARLDLVEKKA 236 >gi|315126186|ref|YP_004068189.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913] gi|315014700|gb|ADT68038.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913] Length = 237 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 139/238 (58%), Gaps = 13/238 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+D K RIIEIG VEL++ T F V++ P R EA+ +HGIT Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELMNRRLTGNNFHVYINPQ-RSIEEEAIDVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSRI 123 +EFL+DKP F I EF+D+ ++AE + HNA FD+G ++ E +N+ + D + Sbjct: 63 NEFLRDKPLFRDIAQEFFDYI--KDAELVIHNAPFDIGHMDNEFALLNQGYQNTHDFCGV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR HP +N+L++LC+RY + + R+ HGALLDS +L+DVY+ M G ++N Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDVDNTKRTLHGALLDSEILADVYLAMTGGQVKLN- 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWD 238 N+D +++K + ++ R + ++ E H + + G + +W Sbjct: 180 -LNQNKDDSSEDQKGGIRRLN-SDRAPLVVVAASEAEQSAHQSRLDIVQKEGGHCLWR 235 >gi|262044050|ref|ZP_06017130.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330005755|ref|ZP_08305367.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3] gi|259038622|gb|EEW39813.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536123|gb|EGF62511.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3] Length = 246 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++N+ Sbjct: 69 HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFSKLNRGIGKTET 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + E + + + EEL H+ + Q G + + Sbjct: 187 SMAFSMEGESQQQAGEMGIQR---VVRAGSQLRVVYASDEELANHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|254560605|ref|YP_003067700.1| DNA polymerase III subunit epsilon [Methylobacterium extorquens DM4] gi|254267883|emb|CAX23749.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens DM4] Length = 236 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 143/240 (59%), Gaps = 10/240 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+IV D ETTG +++N DR+IEIG VEL+++ +T TF + P R S A +HGI Sbjct: 2 LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122 +D L DKP F+ + F +F +A + HNA FDVGF+N E R+ + Sbjct: 61 SDAMLADKPVFAEVVDAFLEFCG--DARLVIHNAPFDVGFLNMEFARLGPAAPKAIALED 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ GG Q + Sbjct: 119 VVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQTS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G E + + +P+ +R+T+ E HD +++LG NA+W Y+ Sbjct: 178 LGLSIAEPAETVTLGALTDSGPVG--PRPMRSRLTEGERLRHDSFVESLGTNAVWREYME 235 >gi|56550935|ref|YP_161774.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp. mobilis ZM4] gi|56542509|gb|AAV88663.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 234 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 131/239 (54%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGL DR++EIG VEL++ +T +F + P R A +HG+ Sbjct: 1 MREIVFDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNPE-RPMDAVAESIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D FL DKP F+ E F + +AHNA FD GF+N EL + + +R++D Sbjct: 60 SDAFLADKPLFADKAQELLSFIKL--SPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR KHP +++ L++LC RYGI SHR KHGALLD+ LL+ +Y+++ GG QI Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELT-GGRQIGMAL 176 Query: 186 KTNEDRFFKEEK-----KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 N +P +KR +P + +EL H I + N +W R Sbjct: 177 DDNNGPSDGRLSAPNTVSGLPRNKKVKR-QPRPHEASPQELLRHGAFIDKIS-NPVWRR 233 >gi|91775831|ref|YP_545587.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] gi|91709818|gb|ABE49746.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] Length = 231 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 95/236 (40%), Positives = 137/236 (58%), Gaps = 14/236 (5%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL ++ RIIEI VEL++ TN F V+L P+ R+ A ++HGI Sbjct: 3 MRQIFLDTETTGLYHAQGHRIIEIAGVELVNRRLTNNHFHVYLNPD-REIDEAAQEVHGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T EFL+DKP F+ I EF F + A+ I HNA FD+GF+NAEL R+ + ++ S I Sbjct: 62 TLEFLQDKPRFADIVDEFLQFVS--GADLIIHNAPFDIGFLNAELNRVGRQNIEHSVLEI 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +A+ P RN+L++LC+ YGI S R+ HGALLD+ LL+DVY+ M G + Sbjct: 120 IDTLKMAKEMRPGQRNNLDALCRHYGIDNSSRTLHGALLDAELLADVYMAMTRGQESLMI 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237 D + + I L + L ++ EL H++ +Q + K+ +W Sbjct: 180 ------DMLDQGPIEGSGEIRLTRSKPLLVLTASEAELAAHEEYLQAMSKSGACVW 229 >gi|92114064|ref|YP_573992.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens DSM 3043] gi|91797154|gb|ABE59293.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens DSM 3043] Length = 253 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 90/253 (35%), Positives = 139/253 (54%), Gaps = 17/253 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D K R+IEIGAVE+++ T + ++ P R PEA+++HGI Sbjct: 1 MRQIVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPE-RDIDPEAVEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--------KDP 117 T+E + D+P F+ I FW++ + AE + HNA FDVGFI+ E ++ Sbjct: 60 TNERVADEPVFADIADAFWEYI--RGAELVIHNAAFDVGFIDHEFGLLHDKRGGPRLGPV 117 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 D ++DTL++AR+ HP RN+L++LCKRYGI R HGALLD+ +LSDVY+ M G Sbjct: 118 ADYCSVLDTLAMARKLHPGQRNNLDALCKRYGIDNGRRVLHGALLDAEILSDVYLTMTGG 177 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTL---G 232 + ++ ++ +V I + R+ TR ++ E H + ++ Sbjct: 178 QTALSLAGIEERAGDEGQDANSVSGIRRVSREGLSLAVTRPSEAEEAAHRAKLDSIRQAA 237 Query: 233 KNAIWDRYISSNQ 245 WD ++Q Sbjct: 238 GQCHWDALNDASQ 250 >gi|319787627|ref|YP_004147102.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas suwonensis 11-1] gi|317466139|gb|ADV27871.1| DNA polymerase III, epsilon subunit [Pseudoxanthomonas suwonensis 11-1] Length = 247 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 142/241 (58%), Gaps = 14/241 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIG VELL+ + R F +L P+ A ++ G+ Sbjct: 1 MRQIILDTETTGLEWKKGNRVVEIGCVELLERRPSGRNFHRYLKPDC-DFEAGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T EFL DKP+F I EF ++ + AE I HNA FD+GF++ EL R +D Sbjct: 60 TLEFLADKPAFEEIVDEFLEYID--GAELIIHNAAFDLGFLDYELSRCGAHLGRIVDRCS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLLLARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWDR 239 FG + + + T + + + ++P + EEL+ H + ++ L K A+WD+ Sbjct: 178 FG---DVEAASRGPVVTTVSFAPVSGERPRIS-AQPEELEAHARRLERLRKKAGRALWDQ 233 Query: 240 Y 240 Y Sbjct: 234 Y 234 >gi|237746089|ref|ZP_04576569.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS] gi|229377440|gb|EEO27531.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS] Length = 248 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 96/240 (40%), Positives = 136/240 (56%), Gaps = 16/240 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL + DRIIEIG VE+L+ T+ F ++ P R + P+AL +HG+ Sbjct: 1 MRQIVLDTETTGLYANDGDRIIEIGCVEVLNRRVTDHHFHQYINPE-RDSHPDALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL DKP F+ I F DF + AE + HNA FDVGF+NAEL R+N P++ S I Sbjct: 60 TTEFLSDKPKFAEIAQAFCDFI--KGAELVIHNAPFDVGFLNAELARLNLPPVEELASCI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR P RN L++LC+R+ I +HR+ HGALLD+ LL++VY+ M G + Sbjct: 118 TDSLLKARDMFPGRRNSLDALCERFEIDNTHRTLHGALLDAELLAEVYLAMTRGQETLEI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK-----NAIWD 238 E ++ L + L T+EEL +H++ + + K +W Sbjct: 178 -----EKLTLSAAEEEARKNHPLSSLRILVLAPTEEELQKHEEVLDDIEKGNKGAPCVWR 232 >gi|153835770|ref|ZP_01988437.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01] gi|156975479|ref|YP_001446386.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116] gi|148867537|gb|EDL66875.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01] gi|156527073|gb|ABU72159.1| hypothetical protein VIBHAR_03210 [Vibrio harveyi ATCC BAA-1116] Length = 238 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 93/239 (38%), Positives = 142/239 (59%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ P+A+ Sbjct: 11 RIVVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAIG 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITDEFL DKP +S++ EF DF + AE +AHNA FD GF++ E + +N Sbjct: 70 VHGITDEFLVDKPEYSAVHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEMLNPSIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + + F K++ + + R R T +E++ H K ++ + + IW Sbjct: 188 TSLEF-------NANKKDGEAEGIRRVEGRKALKVLRATADEVEAHQKRLELVNDS-IW 238 >gi|87198139|ref|YP_495396.1| DNA polymerase III, epsilon subunit [Novosphingobium aromaticivorans DSM 12444] gi|87133820|gb|ABD24562.1| DNA polymerase III, epsilon subunit [Novosphingobium aromaticivorans DSM 12444] Length = 230 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 92/234 (39%), Positives = 132/234 (56%), Gaps = 6/234 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD + DR++EIG +E+ + T F + P R EA +HG+ Sbjct: 2 MREIVFDTETTGLDPRSGDRLVEIGCIEMFNRVPTGAVFHCYFNPE-RDMPAEAEAVHGL 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL DKP F+ + F ++ +AHNA FD GFIN EL+ ++P+ R++D Sbjct: 61 SIAFLSDKPKFAEKADDLLAFIA--DSPMVAHNAGFDFGFINNELELCGREPVSRDRMVD 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IARRKHP ++ L++LC RYGI SHR+KHGALLD+ LL+ +Y+++ GG QI Sbjct: 119 TVAIARRKHPGAKLSLDALCSRYGIDRSHRTKHGALLDAELLAQLYVEL-QGGRQIGLEL 177 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 EE TV + P + EEL H + + + IW R Sbjct: 178 AAQSAIAVTEEVVTVTSSVTRVFRSPRPHSASAEELARHAEFMAGFSE-PIWSR 230 >gi|28870866|ref|NP_793485.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato str. DC3000] gi|28854115|gb|AAO57180.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. tomato str. DC3000] Length = 257 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 96/249 (38%), Positives = 138/249 (55%), Gaps = 15/249 (6%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ RI+EIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 7 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 65 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + D + Sbjct: 66 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCK 123 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 124 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 183 Query: 183 FGFKTNEDRFFKEEKKT-VPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKN----A 235 ++ E I L D+ R ++ EL EH+ + T+ K A Sbjct: 184 LAGNASDGNGSAEGSGNRGSEIRRLPADRKPCRVIRASESELAEHEVRMTTIAKATGAPA 243 Query: 236 IWDRYISSN 244 +W + + + Sbjct: 244 LWVQMLEAG 252 >gi|152978551|ref|YP_001344180.1| DNA polymerase III subunit epsilon [Actinobacillus succinogenes 130Z] gi|150840274|gb|ABR74245.1| DNA polymerase III, epsilon subunit [Actinobacillus succinogenes 130Z] Length = 259 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 97/256 (37%), Positives = 147/256 (57%), Gaps = 15/256 (5%) Query: 1 MIRKNKM-RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M +N++ R+IV D ETTG++ + IIEIGAVEL++ T R +++ P+ R Sbjct: 1 MKEENEIIRQIVLDTETTGMNQFGAHYEGHCIIEIGAVELINRKYTGRKLHLYVKPD-RP 59 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 PEA+K+HGITDE L DKP FS++ EF DF ++AE + HNA FDVGF++ E ++ + Sbjct: 60 IDPEAIKVHGITDEMLADKPDFSTVAQEFIDFI--KDAELLIHNAPFDVGFMDYEFRKHH 117 Query: 115 KD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D D + DTL +ARR++P RN+L++LC R I S R+ HGALLD+ +L DVY+ Sbjct: 118 IDIKTADICTVTDTLQMARRQYPGKRNNLDALCDRLHIDNSKRTLHGALLDAEILGDVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G + +T EE + + + + +T+EEL H + + + Sbjct: 178 AMTGGQVSLFAEEETEISVQKTEEIEEEFIPVQVSSEGLIALPLTEEELAAHTEYLSLIN 237 Query: 233 K----NAIWDRYISSN 244 K N IW + +S + Sbjct: 238 KKSKDNCIWIKRLSPD 253 >gi|91793373|ref|YP_563024.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] gi|91715375|gb|ABE55301.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] Length = 242 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 132/242 (54%), Gaps = 20/242 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG++ RIIEIG VE+++ T RT+ ++ P G+ PEA+ Sbjct: 9 RQIILDTETTGMNQAGGAIYIGHRIIEIGCVEVINRRLTGRTYHQYINP-GQSIDPEAIA 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPL 118 +HGITDE + ++P F I EF DF Q AE +AHNA FDV F++ E + Sbjct: 68 VHGITDERVANEPRFHQIAQEFIDFI--QGAEIVAHNASFDVSFMDHEFSMLQPRGPKTK 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D + I+D+L+IA+R HP +N+L++LCKRYGI S R+ HGALLD+ +L+DVY+ M G Sbjct: 126 DITDILDSLAIAKRLHPGQKNNLDALCKRYGIDNSRRTYHGALLDAEILADVYLLMTGGQ 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKNAI 236 + N + +E + + + + +EL H+ + + + Sbjct: 186 IKFNL-----SNEQAGQEAGGIQRLDPSGFN-LKVIAASADELVLHESRLDLVQKSGKCL 239 Query: 237 WD 238 W Sbjct: 240 WR 241 >gi|209517197|ref|ZP_03266042.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] gi|209502333|gb|EEA02344.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] Length = 244 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 85/239 (35%), Positives = 131/239 (54%), Gaps = 14/239 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+ + DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNPRGGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F+ I +F DF Q+A+ I HNA FD+GF++ E + P+ I Sbjct: 60 TTEFLSDKPKFAEIIDQFRDFI--QDADLIIHNAPFDIGFLDTEFALLGLPPVSTYCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 118 IDTLAQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 P ++L + + + +E H+ + L K ++W Sbjct: 178 DM---LGEAQTGGDTHAPRVALESLE-LVVVAASDDESAAHEAVLDDLDKAVKGTSVWR 232 >gi|119476004|ref|ZP_01616356.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2143] gi|119450631|gb|EAW31865.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2143] Length = 236 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 93/232 (40%), Positives = 132/232 (56%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGL+ + RIIEIG VEL+D T R + ++ P R+ A+++HGI Sbjct: 1 MRQVVLDTETTGLEPSQGHRIIEIGCVELVDRKLTGRHYHQYINPK-REIDTGAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPS 121 T+EFL DKP FS + EF DF AE I HNA FD+GFIN+E + ++ Sbjct: 60 TNEFLADKPLFSQVAQEFLDFV--TGAELIIHNAPFDIGFINSEFKLLDSKSPGTMESYC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR+KHP RN L++LC RY + S R HGALLDS +L+DVY+ M G +++ Sbjct: 118 GVVDTLVMARQKHPGQRNSLDALCSRYEVDNSQRDLHGALLDSEILADVYLLMTGGQTKL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 NE+ + + R EEL EH++ +Q + K Sbjct: 178 LLAGDDNEEGSGHSDNNIRRLST--NRQPLKIILANDEELAEHEERMQKIDK 227 >gi|299133202|ref|ZP_07026397.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2] gi|298593339|gb|EFI53539.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2] Length = 230 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 98/239 (41%), Positives = 143/239 (59%), Gaps = 10/239 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD+ + DR++EIG VE+ ++ T +T+ V++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLDALRGDRLVEIGCVEMFNHMPTGQTYHVYINPE-RDMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F+++ +F F +A I HNA FD+GFIN EL+R+ + + R++D Sbjct: 60 SSEFLSDKPLFAAVAEDFLTFIG--DAPLIIHNASFDIGFINMELERVKRAAIPRERLVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRKHP N L+ LC RY I S R+KHGALLD+ LL++VYI ++ G Q + Sbjct: 118 TLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLI-GARQSSLIL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 + V + R+ PL R+T EE++ H + TLG N IW + + Sbjct: 177 AET-----RTTSIRVVEVERRVREVPLPPRMTPEEIEAHRAFVATLGDNPIWREFSDAE 230 >gi|269960617|ref|ZP_06174989.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3] gi|269834694|gb|EEZ88781.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3] Length = 238 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 142/239 (59%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R +V D ETTG++ + RI+EIGAVE+++ T R F V+L P+ R+ P+A+ Sbjct: 11 RIVVLDTETTGMNLEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYLKPD-REIQPDAIG 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITDEFL DKP +S++ EF DF + AE +AHNA FD GF++ E + +N Sbjct: 70 VHGITDEFLVDKPEYSAVHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEMLNPSIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + + F K++ + + R R T +E++ H K ++ + + IW Sbjct: 188 TSLEF-------NANKKDGEAEGIRRVEGRKALKVLRATADEVEAHQKRLELVNDS-IW 238 >gi|213968849|ref|ZP_03396990.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. tomato T1] gi|301384105|ref|ZP_07232523.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato Max13] gi|302059179|ref|ZP_07250720.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato K40] gi|302135017|ref|ZP_07261007.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926452|gb|EEB60006.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. tomato T1] Length = 259 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 98/257 (38%), Positives = 141/257 (54%), Gaps = 16/257 (6%) Query: 1 MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M +N R IV D ETTG+ RI+EIG VEL+ T R F V+L P+ R++ Sbjct: 1 MTVQNLDNRSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115 A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + Sbjct: 60 AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDK 117 Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D +I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M Sbjct: 118 ADITRHCKILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKT-VPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231 G + ++ ++ E I L D+ R ++ EL EH+ + T+ Sbjct: 178 TGGQTSLSLAGNASDGNGSAEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTI 237 Query: 232 GKN----AIWDRYISSN 244 K A+W + + + Sbjct: 238 AKATGAPALWVQMLEAG 254 >gi|50122261|ref|YP_051428.1| DNA polymerase III subunit epsilon [Pectobacterium atrosepticum SCRI1043] gi|49612787|emb|CAG76237.1| DNA polymerase III, epsilon chain [Pectobacterium atrosepticum SCRI1043] Length = 245 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 141/242 (58%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+++ + +F DF + AE + HNA FD+GF++ E + +N++ Sbjct: 66 HGISDEFLADKPTYADVADDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRNIPKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKITDSLFMARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + E + E +T+ I + + + EL H++ + + G + + Sbjct: 184 SLTFSME-GEAQRQNESNETIQRI-VRPQSALKVLYADETELLAHEQRLDLVAKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|167648966|ref|YP_001686629.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31] gi|167351396|gb|ABZ74131.1| DNA polymerase III, epsilon subunit [Caulobacter sp. K31] Length = 238 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 89/235 (37%), Positives = 135/235 (57%), Gaps = 9/235 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTG D K DR++EIG +E++D+ T R+F + P R EA K+HG++ Sbjct: 3 REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDP-LRDMPAEAQKVHGLS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 EFL KP F I F +F ++ IAHNA FD F+N EL++ N+ PL SR +DT Sbjct: 62 IEFLTGKPKFHEIADAFLEFVG--DSPVIAHNAAFDRSFVNFELEKCNRGPLPESRWVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LCKR+ I++ R KHGAL+D+HLL++VY+++ GG + Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLDSRDKHGALIDAHLLAEVYLEL-QGGKERALELT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKNAIWDRY 240 + S R +PL R T+EE H +Q A+W ++ Sbjct: 179 QVVAVNAVSAARAG---SYGARPRPLPPRSTEEERQLHAAFVQKNFKDKAVWIQF 230 >gi|288940138|ref|YP_003442378.1| DNA polymerase III subunit epsilon [Allochromatium vinosum DSM 180] gi|288895510|gb|ADC61346.1| DNA polymerase III, epsilon subunit [Allochromatium vinosum DSM 180] Length = 240 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 123/239 (51%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VEL+D T R F +L P R+ EA +HGI Sbjct: 1 MRQIVLDTETTGLEPREGHRIIEIGCVELVDRRPTGRNFHEYLNPE-RQIDAEAEAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ FL DKP F+ ++ + AE I HNA FDVGF++ E + Sbjct: 60 SNAFLADKPRFAERAERLVEYL--RGAELIIHNAAFDVGFLDHEFGLWRGAEAPRIADLC 117 Query: 126 T----LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 T L +AR+ HP RN L++LCKRY I SHR+ HGALLD+ +L+DVY+ M G + Sbjct: 118 TVTDSLLMARKLHPGQRNGLDALCKRYAIDNSHRTLHGALLDAEILADVYLAMTGGQVSL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIW 237 G + E + +R + R T+ EL+ H + + +W Sbjct: 178 YLGGEGMNGSGVGEGPVHRGRLDP-ERPRLRVVRATQTELEAHRVRLDAIWKASGGCVW 235 >gi|218529738|ref|YP_002420554.1| DNA polymerase III subunit epsilon [Methylobacterium chloromethanicum CM4] gi|218522041|gb|ACK82626.1| DNA polymerase III, epsilon subunit [Methylobacterium chloromethanicum CM4] Length = 236 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 144/240 (60%), Gaps = 10/240 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+IV D ETTG +++N DR+IEIG VEL+++ +T TF + P R S A +HGI Sbjct: 2 LREIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQ-RAVSEGAFAVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSR 122 +D L DKP F+ + F +F + +A + HNA FDVGF+N E R+ + Sbjct: 61 SDAMLADKPVFAEVVDAFLEFCS--DARLVIHNAPFDVGFLNMEFARLGPAAPKAIALED 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ GG Q + Sbjct: 119 VVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQTS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G E + + +P+ +R+T+ E HD +++LG NA+W Y+ Sbjct: 178 LGLSIAEPAETVALGALTDSGPVG--PRPIRSRLTEGERLRHDSFVESLGTNAVWREYME 235 >gi|53805082|ref|YP_113230.1| DNA polymerase III subunit epsilon [Methylococcus capsulatus str. Bath] gi|53758843|gb|AAU93134.1| DNA polymerase III, epsilon subunit [Methylococcus capsulatus str. Bath] Length = 267 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 98/272 (36%), Positives = 135/272 (49%), Gaps = 44/272 (16%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD K RIIEIG VELLD T F V++ P R+ A+++HG+ Sbjct: 1 MRQIVLDTETTGLDPKAGHRIIEIGCVELLDRRITQNRFHVYINPE-REIDAGAIEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T+EFL P F +I +F +F + AE I HNA FDVGF++ EL + D Sbjct: 60 TNEFLAGMPVFRNIADDFLNFIS--GAELIIHNAAFDVGFLDHELSLLGENRGRIADYCG 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I DTL++AR+ HP RN L++LCKRY + S R HGALLD+ +L+DVY+ M G QI Sbjct: 118 ICDTLAMARKNHPGQRNSLDALCKRYNVDNSRRELHGALLDAEILADVYLAMTGG--QIT 175 Query: 183 FGFKTNEDRFFK-------------------------------EEKKTVPNISLLKRDKP 211 + + + E ++ P R + Sbjct: 176 MLLEADAESGGARGSDGGFERFVVNPSAGSVHAQPGPLGANSVEREQAAPRSVDTARPRL 235 Query: 212 LFTRITKEELDEHDKTIQTLGK----NAIWDR 239 R T EE + H ++ + K N +W R Sbjct: 236 RVIRSTPEEAEAHAARLEAIAKASSGNCLWSR 267 >gi|330810139|ref|YP_004354601.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378247|gb|AEA69597.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 253 Score = 231 bits (589), Expect = 9e-59, Method: Composition-based stats. Identities = 95/249 (38%), Positives = 136/249 (54%), Gaps = 15/249 (6%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122 +EFL KP F+ + EF++F Q A+ I HNA FDVGFIN E + + D Sbjct: 63 NEFLVGKPRFAEVADEFFEFI--QGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 121 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLS 180 Query: 183 FGFKTNEDRFFKE---EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235 ++ E + T R R ++ +L EH ++ + K+ A Sbjct: 181 LAGNASDGNGTGEGSGNQATEIRRLPADRQPSRIIRASESDLAEHAARLEAIAKSAGAPA 240 Query: 236 IWDRYISSN 244 +W + S Sbjct: 241 LWTQLAESQ 249 >gi|330963305|gb|EGH63565.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. actinidiae str. M302091] Length = 259 Score = 231 bits (589), Expect = 9e-59, Method: Composition-based stats. Identities = 98/257 (38%), Positives = 141/257 (54%), Gaps = 16/257 (6%) Query: 1 MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M +N R IV D ETTG+ RI+EIG VEL+ T R F V+L P+ R++ Sbjct: 1 MTAQNLDNRSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115 A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + Sbjct: 60 AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDK 117 Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D +I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M Sbjct: 118 ADITRHCKILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKT-VPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231 G + ++ ++ E I L D+ R ++ EL EH+ + T+ Sbjct: 178 TGGQTSLSLAGNASDGNGSAEGSSNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTI 237 Query: 232 GKN----AIWDRYISSN 244 K A+W + + + Sbjct: 238 AKATGAPALWVQMLEAG 254 >gi|295677150|ref|YP_003605674.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] gi|295436993|gb|ADG16163.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] Length = 244 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 86/239 (35%), Positives = 132/239 (55%), Gaps = 14/239 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARGGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ I +F DF Q A+ I HNA FD+GF++AE + P+ I Sbjct: 60 TTEFLSDKPKFAEIIDQFRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 118 IDTLAQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 P ++L + + + +E H+ + L K ++W Sbjct: 178 DM---LGEAQAGGDTDAPRVALDSLE-LVVIAASDDESAAHEAVLDDLDKAIKGASVWR 232 >gi|223041838|ref|ZP_03612026.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202] gi|223017331|gb|EEF15754.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202] Length = 255 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 92/252 (36%), Positives = 144/252 (57%), Gaps = 17/252 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M+ + R++V D ETTG++ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MLEQEIHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKPSF+ I EF F + AE + HNA FDVGF++ E + Sbjct: 60 EEEAIKVHGITNEFLQDKPSFAEIVDEFVAFI--KGAELVIHNAPFDVGFMDHEFSFLAN 117 Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCTVTDSLALARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 MM GG + +++ + + P I+ + + + + EL+ H ++ L Sbjct: 178 -MMTGGQIALLAEEEHDENPQVDLLEEGPKIAFDTSN-SVILKADESELEAHQLFLKLLY 235 Query: 233 K----NAIWDRY 240 K N IW + Sbjct: 236 KKSKQNCIWGKR 247 >gi|146278706|ref|YP_001168865.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] gi|145556947|gb|ABP71560.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] Length = 237 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 96/236 (40%), Positives = 136/236 (57%), Gaps = 8/236 (3%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 MR+IV D ETTG + + RI+EIGAVEL ++ T RT+ ++ P R EA ++HG Sbjct: 8 PMREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHG 66 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + DEFL+DKP FS I S F +F E A + HNA FD+ F+N EL R+ L R + Sbjct: 67 LGDEFLRDKPVFSEIGSAFLEFVGE--ARLVIHNAAFDMKFLNFELGRVGLPRLPFERAL 124 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR++ P + L++LC+R+G+ S R KHGALLDS +L++VY++++ GG Q +FG Sbjct: 125 DTLALARKRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELI-GGRQPDFG 183 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 R L RIT+EE H + LG AIW + Sbjct: 184 LSAAS---GTRSGGAEGEWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 236 >gi|157375130|ref|YP_001473730.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157317504|gb|ABV36602.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 242 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 136/242 (56%), Gaps = 20/242 (8%) Query: 8 RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+++ D ETTG++ RIIEIG VE+++ T R + ++ P + EA++ Sbjct: 9 RQVILDTETTGMNQGAGAIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QIIDEEAIE 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPL 118 +HGIT+E++ +KP F+ I F DF + AE +AHNA FDV F++ E + Sbjct: 68 VHGITNEYVANKPKFAEISQSFIDFID--GAEVVAHNASFDVNFMDHEFSLLQPRGPKTA 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D +I+DTL IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M G Sbjct: 126 DICQILDTLDIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLMMTGGQ 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AI 236 ++ N + D+ + E + S R R T +EL +H++ + + K+ I Sbjct: 186 TKFNL----SGDKAGEGEGGIIRLNS--NRANLKVIRATADELTKHEERLDLVAKSGQCI 239 Query: 237 WD 238 W Sbjct: 240 WR 241 >gi|226945027|ref|YP_002800100.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ] gi|226719954|gb|ACO79125.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ] Length = 244 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 137/248 (55%), Gaps = 14/248 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ + RIIEIG VEL T R F V+L P+ R A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTEGHRIIEIGCVELQGRRLTGRHFHVYLQPD-RTVDEGAVAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121 TD+FL DKP F+ I EF++F + A+ I HNA FD+GFI E R+ + D Sbjct: 60 TDDFLADKPRFADIAEEFFEFI--KGAQLIIHNAAFDIGFIEDEFSRLGQTERADVNAHC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR +HP RN L++LCKRY + S+R HGALLD+ +L+DV++ M G + + Sbjct: 118 TVLDTLLMARERHPGQRNSLDALCKRYDVDNSNRDLHGALLDAEILADVWLAMTGGQTHL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IW 237 + + +E+ + +R + R ++EL H + + + K A +W Sbjct: 178 SLSGEGSENGGRAQASAIRRLSPERQRTR--VIRAGEQELAAHAERLAAIEKAAGAPPLW 235 Query: 238 DRYISSNQ 245 + + Q Sbjct: 236 LQMEQAQQ 243 >gi|217970689|ref|YP_002355923.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|217508016|gb|ACK55027.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 239 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 94/238 (39%), Positives = 141/238 (59%), Gaps = 15/238 (6%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD +N DR+IEIG VELLD S T R + V++ P GR EA+ +HGI Sbjct: 1 MRQIVLDTETTGLDWRNGDRVIEIGCVELLDRSLTGRHYHVYINP-GRGIDAEAVAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T+EFL DKP F+ I ++F DF ++AE + HNA FDVGF++AEL+R+ + L + + Sbjct: 60 TEEFLADKPKFADIVADFEDFV--RDAELVIHNASFDVGFLDAELERLGRAKLGALCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +A+ ++P + L++LC RY I +HR HGALLD+ LL++V++ M G + Sbjct: 118 VDTLKLAKEQNPGKKASLDALCDRYEIDNAHRELHGALLDAELLAEVFLAMTRGQESLMI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 G +++ + + R R + +E HD + + K +W Sbjct: 178 GLDEE-----AAPRESDSEGTPVLRAAVRVLRASADECAAHDAALADIAKANKGLCLW 230 >gi|91784549|ref|YP_559755.1| DNA polymerase III subunit epsilon [Burkholderia xenovorans LB400] gi|91688503|gb|ABE31703.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] Length = 244 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 134/239 (56%), Gaps = 14/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F I +F DF Q A+ I HNA FD+GF++ E + P+ I Sbjct: 60 TTEFLSDKPKFGEIADQFRDFI--QGADLIIHNAPFDIGFLDVEFALLGLPPVSTYCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + + + P +++ D + + +EL H + L K ++W Sbjct: 176 VIDMLGESHAGGDARA-PRVAIDSLD-LVVITASDDELAAHQALLDGLDKAIKGTSVWR 232 >gi|330878790|gb|EGH12939.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 259 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 99/257 (38%), Positives = 141/257 (54%), Gaps = 16/257 (6%) Query: 1 MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M +N R IV D ETTG+ RI+EIG VEL+ T R F V+L P+ R++ Sbjct: 1 MTAQNLDNRSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115 A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA FDVGFIN E I Sbjct: 60 AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALIGAQDK 117 Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D +I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M Sbjct: 118 ADITRHCKILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKT-VPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231 G + ++ ++ E I L D+ R ++ EL EH+ + T+ Sbjct: 178 TGGQTSLSLAGNASDGNGSAEGSSNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTI 237 Query: 232 GKN----AIWDRYISSN 244 K A+W + + + Sbjct: 238 AKATGAPALWVQMLEAG 254 >gi|242240256|ref|YP_002988437.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech703] gi|242132313|gb|ACS86615.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech703] Length = 244 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 86/242 (35%), Positives = 138/242 (57%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ + RIIEIGAVE+++ T R + V+L P+ R PEA ++ Sbjct: 7 RQVVLDTETTGMNRLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYLKPD-RLVDPEAFQI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL D+P+++ I EF +F + AE + HNA FD+GF++ E + +N+D Sbjct: 66 HGISDEFLIDRPAYADIVDEFIEFI--RGAELVIHNASFDIGFMDYEFRMLNRDIPKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++ARR P RN+L+ LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKITDSLAMARRLFPGKRNNLDVLCTRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F + E + + I+ +EL H++ + + G + + Sbjct: 184 SLAFSSDS-EGTQQAVVAEAIQRIAR-PASALKVIHANDDELMAHEQRLDLVMKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|261820459|ref|YP_003258565.1| DNA polymerase III subunit epsilon [Pectobacterium wasabiae WPP163] gi|261604472|gb|ACX86958.1| DNA polymerase III, epsilon subunit [Pectobacterium wasabiae WPP163] Length = 245 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 139/242 (57%), Gaps = 16/242 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPD-RLVDPEAYNI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+++ I +F DF + AE + HNA FD+GF++ E + +N+D Sbjct: 66 HGISDEFLADKPTYADIADDFLDFI--RGAELVIHNATFDIGFMDYEFRLLNRDLPKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L +AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKITDSLFMARKIFPGKRNSLDALCDRYLIDNSKRTLHGALLDAEILAEVYLAMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 + F E + E +T+ I + + + EL H++ + + G + + Sbjct: 184 SLTFSMD-GETQQQNENSETIQRIVRPQSALTVLY-ADEVELLAHEQRLDLIAKKGGSCL 241 Query: 237 WD 238 W Sbjct: 242 WR 243 >gi|71907224|ref|YP_284811.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Dechloromonas aromatica RCB] gi|71846845|gb|AAZ46341.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Dechloromonas aromatica RCB] Length = 238 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 93/239 (38%), Positives = 133/239 (55%), Gaps = 18/239 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + RIIE+ +E+++ T ++ P R+ A +HGI Sbjct: 1 MRQIVLDTETTGLDPRSGHRIIEVACIEMVNRRFTGHHLHKYINPE-REIDEGAQAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ I EF +F N AE I HNA FD+GF+NAEL R+ + P+ + + Sbjct: 60 TLEFLADKPKFADIADEFLEFIN--GAELIIHNAPFDIGFLNAELDRLGRVPVGTICNGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +A+ HP RN L++LC+RY I S R+ HGALLD+ LL+DV++ M G + + Sbjct: 118 IDTLRMAKELHPGKRNSLDALCERYEIDNSSRTLHGALLDTELLADVFLAMTRGQNSLMI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKN----AIW 237 E + + ++ KPL R EE+ EH+ + + K IW Sbjct: 178 -------EPDAEPRPNIGADGQVRERKPLSVRRAAPEEIAEHETVLAAIDKESKGACIW 229 >gi|300724515|ref|YP_003713838.1| DNA polymerase III subunit epsilon [Xenorhabdus nematophila ATCC 19061] gi|297631055|emb|CBJ91741.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Xenorhabdus nematophila ATCC 19061] Length = 249 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 139/245 (56%), Gaps = 23/245 (9%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + IIEIGAVE+++ T R F +++ P R PEA ++ Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHIYIKPE-RLVDPEAFEV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL+DKP F+ I EF +F + AE I HNA FD+GF++ E ++N+D Sbjct: 66 HGISDEFLQDKPLFADIADEFIEFI--RGAELIIHNATFDIGFMDYEFSKLNRDIPPTAD 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +AR+ P RN+L++LC RY I S R+ HGALLD+ +LSDVY+ M G + Sbjct: 124 FCTITDSLMLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLDAEILSDVYLAMTGGQT 183 Query: 180 QINFGFK---TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GK 233 + F + ++ + K T P + L + EEL +H+ + + G Sbjct: 184 SLAFSMEGEVSSHALVSEIHKITRPQVGL------KVIYASDEELTQHESRLDLVEKKGG 237 Query: 234 NAIWD 238 + +W Sbjct: 238 SCLWR 242 >gi|307730502|ref|YP_003907726.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003] gi|307585037|gb|ADN58435.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003] Length = 244 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 86/239 (35%), Positives = 133/239 (55%), Gaps = 14/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F+ I +F DF Q A+ I HNA FD+GF++AE + P+ I Sbjct: 60 TTEFLSDKPKFAEIADQFRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + P +++ + + + EE+ H + L K ++W Sbjct: 178 DM---LGESHAGGEAHAPRVAIESLE-LVVIAASDEEVAAHQAVLDGLDKAIKGTSVWR 232 >gi|170695448|ref|ZP_02886593.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] gi|170139639|gb|EDT07822.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] Length = 247 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 86/239 (35%), Positives = 133/239 (55%), Gaps = 14/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F+ I + DF Q A+ I HNA FD+GF++AE + P+ I Sbjct: 60 TTEFLSDKPKFADIADQIRDFI--QGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + P +++ D + + +EL H + + L K ++W Sbjct: 178 DM---LGESHAGGEAHAPRVAIESLD-LVVIAASDDELAAHQEVLDGLDKAIRGTSVWR 232 >gi|119503277|ref|ZP_01625361.1| response regulator receiver domain protein (CheY-like) [marine gamma proteobacterium HTCC2080] gi|119460923|gb|EAW42014.1| response regulator receiver domain protein (CheY-like) [marine gamma proteobacterium HTCC2080] Length = 239 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 94/241 (39%), Positives = 139/241 (57%), Gaps = 12/241 (4%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++V D ETTGL+ S+ RIIEIG VEL++ T R F ++ P R AL +HGIT Sbjct: 3 RQVVLDTETTGLEVSQGHRIIEIGCVELINRRLTGRHFHQYIQPE-RDIDAGALAVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SRI 123 EFL DKP+F I ++F F + AE I HNA FDVGFI+AEL R N+D I Sbjct: 62 PEFLADKPTFDRIANDFVTFID--GAELIIHNAPFDVGFIDAELARFNRDHPSTSALCSI 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL++AR KHP RN L++LC+RY + + R+ HGALLD+ +L+DV++ M G + + Sbjct: 120 VDTLTLARSKHPGQRNSLDALCQRYHVDNASRTLHGALLDAEILADVFLIMTGGQTSLGL 179 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239 + +E+ + + +S ++ P+ T EL H+ + + G +W Sbjct: 180 HDEPSEEGGSGLGARGIRRLSSERKPLPVIN-ATAAELSRHENRLDQIATHSGGAVLWRE 238 Query: 240 Y 240 + Sbjct: 239 H 239 >gi|146307095|ref|YP_001187560.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp] gi|145575296|gb|ABP84828.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] Length = 252 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 94/255 (36%), Positives = 141/255 (55%), Gaps = 13/255 (5%) Query: 1 MIRKNKM-RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M N + R +V D ETTG+ RIIEIG VELL T R F V+L P+ R+ Sbjct: 1 MTTDNTVNRYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPD-REIDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115 A+ +HGIT+E++ DKP F + EF++F + A+ I HNA FDVGFIN E + + Sbjct: 60 AIAVHGITNEYVADKPRFRDVADEFYEFI--KGAQLIIHNAAFDVGFINNEFALLGQSER 117 Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D D ++DTL +AR +HP RN L++LCKRYG+ S+R HGALLDS +L+DVY+ M Sbjct: 118 ADVSDYCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLAM 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 G + ++ + + ++ T R + R +++EL H + + K+ Sbjct: 178 TGGQTHLSLAGEGADSDGSGRQQATPIRRLDAARPRTRVIRASEDELAAHLARLAAIEKS 237 Query: 235 A----IWDRYISSNQ 245 A +W + + + Sbjct: 238 AGGPSLWAQLEKAPE 252 >gi|209966072|ref|YP_002298987.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW] gi|209959538|gb|ACJ00175.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW] Length = 227 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 135/232 (58%), Gaps = 11/232 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+D+ DR++EIG VEL+++ T RT+ ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGIDALNGDRVVEIGCVELMNHVATGRTYHQYINPE-RDMPIEAFNVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL +P+F+ I F DF Q++ + HNA FDVGF+NAEL R+ L +R ID Sbjct: 60 STEFLSGQPTFAEIVGPFLDFI--QDSPLVIHNATFDVGFLNAELTRLGMRTLPAARAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +ARR+ P + L++LC+R+ I S RS HGALLD+ LL++VY++++ GG Q + Sbjct: 118 TVVLARRRFPGAPASLDALCRRFEIDNSARSYHGALLDAQLLAEVYLELL-GGRQPDLVL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + + P R +P EEL+ H+ ++ +W Sbjct: 177 APTGAQAAASFRTDRP------RREPRPHAPLPEELEAHEAFLKGFKTPPLW 222 >gi|301155941|emb|CBW15411.1| DNA polymerase III epsilon subunit [Haemophilus parainfluenzae T3T1] Length = 253 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 85/253 (33%), Positives = 132/253 (52%), Gaps = 16/253 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVE+++ T F +++ P+ R Sbjct: 1 MI--NPDRQIVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPD-RLV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F +I +F ++ + AE + HNA FDVGF++ E +++ Sbjct: 58 DPDAIKVHGITDEMLADKPDFKTIAQDFIEYI--RGAELLIHNAPFDVGFMDYEFRKLGL 115 Query: 116 DPLDPSRII--DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D + DTL +AR+ +P RN L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 DIKTTDICLVTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLS 175 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G + + + ++ + T +E+ H ++ + K Sbjct: 176 MTGGQTSLFDEDHADISIIQAGANMQDRQSTVNFSQNLKVLQPTDDEIQAHLDFLKLVNK 235 Query: 234 ----NAIWDRYIS 242 W S Sbjct: 236 KSDGKCFWSIRTS 248 >gi|254707409|ref|ZP_05169237.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M163/99/10] gi|261314895|ref|ZP_05954092.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M163/99/10] gi|261303921|gb|EEY07418.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis M163/99/10] Length = 201 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 88/204 (43%), Positives = 127/204 (62%), Gaps = 4/204 (1%) Query: 40 TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 T RTF F+ P GR+ P+AL +HGI++E L DKP F+ I EF +F + A +AHNA Sbjct: 1 TGRTFHKFINPQGRQVHPDALAVHGISNEQLLDKPVFAEILDEFLEFID--GARLVAHNA 58 Query: 100 KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 FD+GFINAEL R+++ + I+DTL++ARRKHP N L++LCKRYGI SHR+ HG Sbjct: 59 MFDLGFINAELARLDQAEITSEHIVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHG 118 Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT-VPNISLLKRDKPLFTRITK 218 ALLD+ +L++VYI+++ GG Q G + + + L R +PL RI+ Sbjct: 119 ALLDAQILAEVYIELI-GGKQTALGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISD 177 Query: 219 EELDEHDKTIQTLGKNAIWDRYIS 242 E H ++ +G A+W +Y+S Sbjct: 178 AERAAHAALVEKMGDKAVWKKYLS 201 >gi|218513681|ref|ZP_03510521.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3] Length = 229 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 99/191 (51%), Positives = 135/191 (70%), Gaps = 3/191 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DEFLKDK +F+ + E FF +A+WIAHNA FD+GFINAE RI P+ P R++DT Sbjct: 61 DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPERVVDT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINFGF 185 LS+ARRKHP N L++LC+RYG+ SHR+KHGALLDS LL++VYI+M+ G + + G Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQAALGLGL 178 Query: 186 KTNEDRFFKEE 196 + + E Sbjct: 179 SGQSGQTARGE 189 >gi|187479401|ref|YP_787426.1| DNA polymerase III subunit epsilon [Bordetella avium 197N] gi|115423988|emb|CAJ50541.1| DNA polymerase III, epsilon chain [Bordetella avium 197N] Length = 243 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 94/239 (39%), Positives = 131/239 (54%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTGLD + RI+EIG VEL++ T R ++L P+ R + PEAL +HG+ Sbjct: 1 MRQIIFDTETTGLDPAQGHRIVEIGCVELVNRMVTGRNLHLYLNPD-RDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T FL DKP F I F F + AE IAHNA FDV F NAELQ++ + LD + Sbjct: 60 TTAFLSDKPRFGDIAEAFIQFI--EGAELIAHNASFDVKFFNAELQKVGRKTLDNYCASV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L+ AR P RN L++LC RYGI+ +HR+ HGALLDS LL++V++ M G + Sbjct: 118 TDSLAHARTLFPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 N + ++ E+L EH+ + L G + +W Sbjct: 178 DVDDN------QAGGNRIALAAFDASVLPVVAAAGEDLTEHEAYLAALDKAVGGSCLWR 230 >gi|77458414|ref|YP_347919.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf0-1] gi|77382417|gb|ABA73930.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens Pf0-1] Length = 252 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 95/249 (38%), Positives = 136/249 (54%), Gaps = 15/249 (6%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIAVHGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPSR 122 +EFL KP F+ + EF++F N A+ I HNA FDVGFIN E + + D Sbjct: 63 NEFLVGKPRFAEVADEFFEFIN--GAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 121 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLS 180 Query: 183 FGFKTNEDRF---FKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----A 235 ++ + T R R T+ EL EH ++ + K+ A Sbjct: 181 LAGNASDGNGTGEGADNSATEIRRLPADRQPGRIIRATEAELAEHQVRLEIIAKSAGAPA 240 Query: 236 IWDRYISSN 244 +W + + + Sbjct: 241 LWTQLLEAE 249 >gi|66045009|ref|YP_234850.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. syringae B728a] gi|63255716|gb|AAY36812.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Pseudomonas syringae pv. syringae B728a] Length = 259 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 98/257 (38%), Positives = 141/257 (54%), Gaps = 16/257 (6%) Query: 1 MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M +N R IV D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ Sbjct: 1 MALQNLDNRSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---- 114 A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + Sbjct: 60 AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDR 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M Sbjct: 118 ADITQHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177 Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231 G + ++ G ++ + + I L D+ R ++ EL EH+ + T+ Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTI 237 Query: 232 GKNA----IWDRYISSN 244 K +W + + + Sbjct: 238 AKACGAPPLWVQMLEAG 254 >gi|206577790|ref|YP_002240302.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342] gi|290509928|ref|ZP_06549298.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55] gi|206566848|gb|ACI08624.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342] gi|289776644|gb|EFD84642.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55] Length = 243 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++N+ Sbjct: 66 HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFGKLNRGIGKTET 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 124 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 183 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + E + + + EEL H+ + Q G + + Sbjct: 184 SMAFSMEGESQQQAGEMGIQR---VVRAASQLRVVYASDEELVNHESRLDLVQKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|302187967|ref|ZP_07264640.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. syringae 642] gi|330952814|gb|EGH53074.1| DNA polymerase III subunit epsilon [Pseudomonas syringae Cit 7] gi|330972572|gb|EGH72638.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aceris str. M302273PT] Length = 259 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 98/257 (38%), Positives = 141/257 (54%), Gaps = 16/257 (6%) Query: 1 MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M +N R IV D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ Sbjct: 1 MALQNLDNRSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---- 114 A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + Sbjct: 60 AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDR 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M Sbjct: 118 ADITQHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177 Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231 G + ++ G ++ + + I L D+ R ++ EL EH+ + T+ Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTI 237 Query: 232 GKNA----IWDRYISSN 244 K +W + + + Sbjct: 238 AKACGAPPLWVQMLEAG 254 >gi|304320447|ref|YP_003854090.1| putative DNA polymerase III subunit epsilon and related 3'-5'exonuclease [Parvularcula bermudensis HTCC2503] gi|303299349|gb|ADM08948.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Parvularcula bermudensis HTCC2503] Length = 245 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 92/243 (37%), Positives = 135/243 (55%), Gaps = 15/243 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD R++EIGAVE+++ + T RTF V++ P R A ++H + Sbjct: 1 MRQIVFDTETTGLDPLDGHRVVEIGAVEMVNGALTGRTFHVYVNPE-RDMPEAAYRVHKL 59 Query: 66 TDEFLKDKPSFSS--IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PS 121 + +FL DKP F I F+ F + A +AHNA FD F+ L I P Sbjct: 60 SSQFLADKPIFKDPAIGQAFYQFC--EGAVLVAHNASFDCKFMQHHLDEIGLPWAWGEPG 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYIKMMVGGS 179 I+DTL IAR++ P S + L++LC+R+GI ++ R HGALLDS LL++VYI++ GG Sbjct: 118 DIVDTLQIARKRFPGSPSSLDALCQRFGIDLTEREAQGHGALLDSRLLAEVYIELT-GGR 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 Q F ++ + + + P +R P +T EE H I + K+ +W R Sbjct: 177 QGGLIFDPDQSVGGRRKARGEP---ARQRPGPRPQLLTDEEHAAHAALIGEM-KDPLWAR 232 Query: 240 YIS 242 Y + Sbjct: 233 YTA 235 >gi|329900785|ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] gi|327549374|gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] Length = 235 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 91/239 (38%), Positives = 142/239 (59%), Gaps = 15/239 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + DR+IEIG VE+++ T + F +L P R + AL +HG+ Sbjct: 1 MRQIVLDTETTGLNPRSGDRVIEIGCVEMINRRLTGKNFHCYLNPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T EFL+DKP F+++ +E D+ + AE I HNA FDVGF++AE +R++ + + Sbjct: 60 TTEFLRDKPKFAAVAAELRDYIS--GAEVIIHNAPFDVGFLDAEFKRLDIPLFNTQVSGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A+ HP RN L+SLC RYG++ +HR+ HGALLD+ LL++VY+ M G + ++ Sbjct: 118 IDTLVQAKEMHPGKRNSLDSLCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 + + ++ ++ L+ L + EEL EH+ + L K ++W Sbjct: 178 ELDDGD-----QAGESGAHLELVPLADILVLPASAEELGEHELALTALDKEMRGTSLWR 231 >gi|330939732|gb|EGH43019.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. pisi str. 1704B] Length = 259 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 95/257 (36%), Positives = 141/257 (54%), Gaps = 16/257 (6%) Query: 1 MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M +N R +V D ETTG+ RI+EIG VEL+ T R F V+L P+ R++ Sbjct: 1 MALQNLDNRAVVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---- 114 A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + Sbjct: 60 AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDR 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D ++DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M Sbjct: 118 ADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177 Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231 G + ++ G ++ + + I L D+ R ++ EL EH+ + T+ Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHEVRMSTI 237 Query: 232 GKNA----IWDRYISSN 244 K +W + + + Sbjct: 238 AKACGAPPLWVQMLEAG 254 >gi|294141155|ref|YP_003557133.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12] gi|293327624|dbj|BAJ02355.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12] Length = 242 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 130/242 (53%), Gaps = 20/242 (8%) Query: 8 RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+I+ D ETTG++ RIIEIG VE+++ T R + ++ P + EA++ Sbjct: 9 RQIILDTETTGMNQAAGAIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QLIDEEAIQ 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPL 118 +HGI++E++ +KP F+ I F +F + AE +AHNA FD+ F++ E + Sbjct: 68 VHGISNEYVANKPKFAEIAQSFIEFID--GAEVVAHNASFDISFMDHEFGLLRPKGPKTA 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D I+DTL+IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M G Sbjct: 126 DICGILDTLAIAKYLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLLMTGGQ 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKNAI 236 ++ N T + + +R K + +EL +H+ + + G Sbjct: 186 TKFNLSGDTGGIGAGGIIRLS------QERTKLKVISASADELAKHEARLDIVAKGGQCA 239 Query: 237 WD 238 W Sbjct: 240 WR 241 >gi|153000540|ref|YP_001366221.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185] gi|160875177|ref|YP_001554493.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195] gi|217973494|ref|YP_002358245.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223] gi|151365158|gb|ABS08158.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185] gi|160860699|gb|ABX49233.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195] gi|217498629|gb|ACK46822.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223] gi|315267371|gb|ADT94224.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678] Length = 242 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 133/248 (53%), Gaps = 20/248 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ RIIEIG VE+++ T R + ++ P G+ Sbjct: 3 IISNASRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 PEA+ +HGITDE + +P F + +F +F + AE +AHNA FDV F++ E + Sbjct: 62 DPEAIAVHGITDERVSKEPRFHQVAQDFINFID--GAEIVAHNANFDVSFMDHEFSLLQP 119 Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D +I+DTL IA+ HP +N+L++LCKRYG+ S R HGALLD+ +L+DVY+ Sbjct: 120 RGPKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G ++ N + ++ +++L + +EL H++ + + Sbjct: 180 IMTGGQTKFNLSNEEAGQEAGGIQRFDPQSLNL------KVIGASADELTMHEQRLDLVA 233 Query: 233 K--NAIWD 238 K +W Sbjct: 234 KSGKCLWR 241 >gi|56479129|ref|YP_160718.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum EbN1] gi|56315172|emb|CAI09817.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum EbN1] Length = 239 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 100/238 (42%), Positives = 145/238 (60%), Gaps = 16/238 (6%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD +N DR+IEIG VELL+ + T R + V++ P R EA+ +HGI Sbjct: 1 MRQIVLDTETTGLDWRNGDRVIEIGCVELLNRNLTGRHYHVYINPE-RGIDAEAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T++FL DKP+FS+I +EF DF ++AE I HNA FDVGF+N EL R+ + LD + + Sbjct: 60 TEDFLADKPTFSAIAAEFEDFI--RDAELIIHNASFDVGFLNHELSRLGRGKLDSLCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +A+ ++P + L++LC R+ I + R+ HGALLD+ LL++VY+ M G + Sbjct: 118 IDTLKMAKEQNPGKKASLDALCDRHQIDNASRTLHGALLDAELLAEVYLAMTRGQESLIM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237 + E E V L+ R R + EEL EH++ +Q + K +W Sbjct: 178 VLE--EPVPGSAEAGGV----LVDRPPLKVLRASGEELAEHERVLQDIAKGTKGTCLW 229 >gi|23010300|ref|ZP_00051037.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 236 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 90/240 (37%), Positives = 140/240 (58%), Gaps = 10/240 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+IV D ETTG D+KN DR+IEIG VEL+++ +T + + P R S A +HGI Sbjct: 2 LREIVLDTETTGTDAKNGDRLIEIGCVELINHVQTGAYYHQLINPQ-RPVSEGAFAVHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SR 122 +D L DKP F+ + F F +A + HNA FDVGF+N E ++ Sbjct: 61 SDAMLADKPVFADVVDAFVAFCG--DARLVIHNAPFDVGFLNMEFAKLGPAAPPLIVLED 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +ARRKHP + N+L++LC RYG+ + R KHGALLD+ +L++VY++++ GG Q + Sbjct: 119 VVDTLLLARRKHPGAANNLDALCNRYGVDTTRRVKHGALLDAQILAEVYVELL-GGKQTS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G E + + + R + +R+T++E H +++LG NA+W Y+ Sbjct: 178 LGLSIAEPAGSVAVEAVADSGPIAPRA--MRSRLTEDERLRHVSFVESLGTNAVWRDYLE 235 >gi|288937007|ref|YP_003441066.1| DNA polymerase III subunit epsilon [Klebsiella variicola At-22] gi|288891716|gb|ADC60034.1| DNA polymerase III, epsilon subunit [Klebsiella variicola At-22] Length = 246 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 133/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLD 119 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E ++N+ Sbjct: 69 HGIADEFLLDKPTFADVADEFMDYI--RGAELVIHNASFDIGFMDYEFGKLNRGIGKTET 126 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L+DVY+ M G + Sbjct: 127 FCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQT 186 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAI 236 + F + + E + + + EEL H+ + Q G + + Sbjct: 187 SMAFSMEGESQQQAGEMGIQR---VVRAASQLRVVYASDEELVNHESRLDLVQKKGGSCL 243 Query: 237 WD 238 W Sbjct: 244 WR 245 >gi|270263405|ref|ZP_06191674.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13] gi|270042289|gb|EFA15384.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13] Length = 246 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 132/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R + V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+F I EF DF + E + HNA FD+GF++ E + + K Sbjct: 66 HGISDEFLADKPTFDQIADEFIDFI--RGGELVIHNASFDIGFMDHEFRMLQKGLPKTDT 123 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I D+L +ARR P RN+L++LC RY I S R+ HGALLD+ +L++VY+ M G Sbjct: 124 FCTITDSLLMARRLFPGKRNNLDALCGRYEIDNSKRTLHGALLDAEILAEVYLAMTGG-- 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 Q + F+ D + + + I + + E+ H+ + + G + + Sbjct: 182 QTSMAFQMEGDTQHNDSTQDIQRI-VRPATAMKVVYASDAEVVAHEARLDLVAKKGGSCL 240 Query: 237 WD 238 W Sbjct: 241 WR 242 >gi|325578763|ref|ZP_08148810.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus parainfluenzae ATCC 33392] gi|325159587|gb|EGC71719.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus parainfluenzae ATCC 33392] Length = 253 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 86/255 (33%), Positives = 132/255 (51%), Gaps = 16/255 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG++ + IIEIGAVE+++ T F +++ P+ R Sbjct: 1 MI--NPDRQIVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPD-RLV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F +I +F ++ + AE + HNA FDVGF++ E +++ Sbjct: 58 DPDAIKVHGITDEMLADKPDFKTIAQDFIEYI--RGAELLIHNAPFDVGFMDYEFRKLGL 115 Query: 116 DPLDPSRII--DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D + DTL +AR+ +P RN L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 DIKTTDICLVTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLS 175 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G + + + ++ + T +EL H I+ + K Sbjct: 176 MTGGQTSLFDEEHADSSIIQTTANVQDLQSAVNFSQNLKVLQPTDDELQAHLDFIKLVNK 235 Query: 234 ----NAIWDRYISSN 244 W + Sbjct: 236 KSDGKCFWSIRTGNE 250 >gi|146282599|ref|YP_001172752.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri A1501] gi|145570804|gb|ABP79910.1| DNA polymerase III, epsilon chain [Pseudomonas stutzeri A1501] gi|327480856|gb|AEA84166.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 4166] Length = 241 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 128/227 (56%), Gaps = 9/227 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTG+ RIIEIG VE++ T R + V+L P+ R+ A+ +HGI Sbjct: 1 MRSVVLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPD-REVDEGAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK----DPLDPS 121 T+EFL DKP F I EF++F ++A+ + HNA FD+GFIN E + + + D Sbjct: 60 TNEFLVDKPRFRDIADEFFEFI--KDAQLVIHNAAFDLGFINNEFALLGQQDRAEITDHC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR +HP RN L++LCKRYG+ S R HGALLD+ +L+DV++ M G + + Sbjct: 118 TVLDTLLMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMTGGQTNL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 + + + + + R + R + EEL H + Sbjct: 178 SLAGDGESSDGGRPQPSPIRRLP-ADRPRTAVLRASDEELAAHMARM 223 >gi|126174224|ref|YP_001050373.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155] gi|125997429|gb|ABN61504.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155] Length = 242 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 133/248 (53%), Gaps = 20/248 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ RIIEIG VE+++ T R + ++ P G+ Sbjct: 3 IISNANRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQAI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 PEA+ +HGITDE + +P F + +F +F + AE +AHNA FDV F++ E + Sbjct: 62 DPEAIAVHGITDERVSKEPRFHQVAQDFINFID--GAEIVAHNANFDVSFMDHEFSLLQP 119 Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D +I+DTL IA+ HP +N+L++LCKRYG+ S R HGALLD+ +L+DVY+ Sbjct: 120 RGPKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G ++ N + ++ +++L + +EL H++ + + Sbjct: 180 IMTGGQTKFNLSNEEAGQEAGGIQRFDPQSLNL------KVIGASADELTMHEQRLDLVA 233 Query: 233 K--NAIWD 238 K +W Sbjct: 234 KSGKCLWR 241 >gi|304408611|ref|ZP_07390232.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|307305439|ref|ZP_07585187.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] gi|304352432|gb|EFM16829.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|306911742|gb|EFN42167.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] Length = 242 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 134/248 (54%), Gaps = 20/248 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 I N R+++ D ETTG++ RIIEIG VE+++ T R + ++ P G+ Sbjct: 3 IISNANRQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINP-GQTI 61 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 PEA+ +HGITDE + +P F + +F +F + AE +AHNA FDV F++ E + Sbjct: 62 DPEAIAVHGITDERVSKEPRFHQVAQDFINFID--GAEIVAHNANFDVSFMDHEFSLLQP 119 Query: 114 -NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 D +I+DTL IA+ HP +N+L++LCKRYG+ S R HGALLD+ +L+DVY+ Sbjct: 120 RGPKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYL 179 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G ++ N + ++ +++L + +EL+ H++ + + Sbjct: 180 IMTGGQTKFNLSNEEAGQEAGGIQRFDPQSLNL------KVIGASADELNMHEQRLDLVA 233 Query: 233 K--NAIWD 238 K +W Sbjct: 234 KSGKCLWR 241 >gi|289679441|ref|ZP_06500331.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. syringae FF5] gi|330975085|gb|EGH75151.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 259 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 96/257 (37%), Positives = 141/257 (54%), Gaps = 16/257 (6%) Query: 1 MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M +N R IV D ETTG+ RI+EIG VEL+ T R F V+L P+ R++ Sbjct: 1 MALQNLDNRSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---- 114 A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + Sbjct: 60 AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDR 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D ++DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M Sbjct: 118 ADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177 Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231 G + ++ G ++ + + I L D+ R ++ EL EH+ + T+ Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHEVRMSTI 237 Query: 232 GKNA----IWDRYISSN 244 K +W + + + Sbjct: 238 AKACGAPPLWVQMLEAG 254 >gi|89094533|ref|ZP_01167472.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Oceanospirillum sp. MED92] gi|89081269|gb|EAR60502.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Oceanospirillum sp. MED92] Length = 236 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 138/238 (57%), Gaps = 15/238 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + IIEIG VE+ + T +T+ ++ P+ R EA+++HGI Sbjct: 1 MRQIVLDTETTGLEPSEGHNIIEIGCVEMFNRRLTGKTYHQYIKPD-RDVDAEAIQVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124 T+EFL+DKP F + EF +F + AE I HNA FD+GF++ EL R + + Sbjct: 60 TNEFLEDKPKFHEVMEEFVEFV--RGAELIIHNAAFDIGFLDTELDRNGYPERMENFSLV 117 Query: 125 -DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L +AR+KHP +N+L++LC RYGI SHR HGALLDS +L+DVY+ + G + ++ Sbjct: 118 TDSLKLARKKHPGQKNNLDALCNRYGINNSHRELHGALLDSEILADVYLALTGGQTNLSL 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 + ++ K L D +I++ + EHDK ++ L K +W Sbjct: 178 AGEGDDGEGAGAVIK-----RLSGADDLPLVQISENDQQEHDKFLKMLDKKSGGECLW 230 >gi|330882898|gb|EGH17047.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. glycinea str. race 4] Length = 259 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 139/248 (56%), Gaps = 15/248 (6%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSR 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + D Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 185 Query: 183 F-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKN----A 235 G ++ + + I L D+ R ++ EL EH+ + T+ K A Sbjct: 186 LAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPA 245 Query: 236 IWDRYISS 243 +W + + + Sbjct: 246 LWVQMLEA 253 >gi|308185776|ref|YP_003929907.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1] gi|308056286|gb|ADO08458.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1] Length = 243 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 142/249 (57%), Gaps = 18/249 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F ++L P+ R Sbjct: 1 MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+FS I EF D+ + AE + HNA FD+GF++ E ++N+ Sbjct: 59 DPEAFGVHGIADEFLADKPAFSEIADEFLDYI--RGAELVIHNAPFDIGFMDYEFSKLNR 116 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +I D+L++ARR P RN L++LC RY I + R+ HGALLD+ +L++V++ Sbjct: 117 GIEKTETFCKITDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAEILAEVFL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231 M G + ++F ++ R + + +++ I + ++EE+ H+ + + Sbjct: 177 TMTGGQTSLSFLSESESAR--QAQGESIQRI-VRPASALRVVTASEEEVVAHESRLDLVM 233 Query: 232 --GKNAIWD 238 G + +W Sbjct: 234 KKGGSCLWR 242 >gi|163732957|ref|ZP_02140401.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149] gi|161393492|gb|EDQ17817.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149] Length = 228 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 96/234 (41%), Positives = 148/234 (63%), Gaps = 8/234 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL+ + T +T+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGKTYHQYINPE-RMMPDEAFQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP F+ + F DF +A+ + HNA FD+ F+NAEL+ +N + + ID Sbjct: 60 GDEFLRDKPKFAEVGQAFLDFIG--DAKLVIHNAAFDIKFLNAELKWMNLPQIPWEQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++ P S L++LC+R+GI + R+ HGALLDS +L++VY++++ GG Q +FG Sbjct: 118 TLAIARKRFPGSPASLDALCRRFGIDNASRTLHGALLDSEILAEVYLELI-GGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + K T + + R PL +R+T+EE H + + LG +A+W + Sbjct: 177 S---NIPQKSAGDTSVDWTPRPRPTPLPSRMTEEEAAAHAEFVAKLGDDAVWLK 227 >gi|254361771|ref|ZP_04977906.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica PHL213] gi|261494027|ref|ZP_05990530.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496213|ref|ZP_05992619.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093306|gb|EDN74302.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica PHL213] gi|261308165|gb|EEY09462.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310193|gb|EEY11393.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 258 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 89/255 (34%), Positives = 141/255 (55%), Gaps = 17/255 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M + +R++V D ETTG++ IIEIGAVE+++ T RT+ V++ P R+ Sbjct: 1 MTEEKIIRQVVLDTETTGMNMAGGPPQIGHNIIEIGAVEVINRRLTGRTYHVYIKPP-RE 59 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 EA+ +HGIT+EFL+DKP F+ I EF DF + AE I HNA FDV F++ E + Sbjct: 60 VDEEAIAVHGITNEFLQDKPVFAEIAEEFLDFI--KGAELIIHNAPFDVAFMDQEFSYLP 117 Query: 115 KDPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P + + D+L +ARR +P RN+L++LC R GI S R HGALLD+ +L+DV+ Sbjct: 118 NPPAKTAEMCTVTDSLQMARRMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVF 177 Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 + M G + G + E + + + +L D+ + + EE + H ++ + Sbjct: 178 LMMTGGQISL-LGEEETEVVSEVIDIEEEFSAIVLNADEAIILKANDEEEESHLALLKLI 236 Query: 232 GK----NAIWDRYIS 242 K N +W + ++ Sbjct: 237 EKKSKGNCLWTKALT 251 >gi|163801804|ref|ZP_02195701.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4] gi|159174312|gb|EDP59116.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4] Length = 238 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 94/239 (39%), Positives = 140/239 (58%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R IV D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R+ PEA+ Sbjct: 11 RIIVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPD-REIQPEAIG 69 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 +HGITDEFL DKP +S + EF DF + AE +AHNA FD GF++ E + ++ Sbjct: 70 VHGITDEFLVDKPDYSHVHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEMLDPAIGKTD 127 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++ DTL++A++ P RN+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G Sbjct: 128 DFCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQ 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + + F K+ + + R R T +E++ H K ++ + + IW Sbjct: 188 TSLEF-------NANKKNGEPEGIRRVQGRKALKVLRATADEVEAHQKRLELVNDS-IW 238 >gi|320325171|gb|EFW81239.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. glycinea str. B076] Length = 259 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 139/248 (56%), Gaps = 15/248 (6%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSR 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + D Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 185 Query: 183 F-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKN----A 235 G ++ + + I L D+ R ++ EL EH+ + T+ K A Sbjct: 186 LAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPA 245 Query: 236 IWDRYISS 243 +W + + + Sbjct: 246 LWVQMLEA 253 >gi|237803575|ref|ZP_04591160.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025557|gb|EGI05613.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae str. 1_6] Length = 257 Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 96/249 (38%), Positives = 140/249 (56%), Gaps = 15/249 (6%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ A+ +HGIT Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEGAIGVHGIT 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN----KDPLDPSR 122 +EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + D Sbjct: 68 NEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGDQDRSDITRHCS 125 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M G + ++ Sbjct: 126 ILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLS 185 Query: 183 F-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGK----NA 235 G ++ + + I L ++ R ++ EL EH+ + T+ K +A Sbjct: 186 LAGNASDGNGSGEGSGNRGSEIRRLPANRKPCRVIRASESELAEHEVRMSTIAKASGASA 245 Query: 236 IWDRYISSN 244 +W + + + Sbjct: 246 LWVQMLEAG 254 >gi|296158207|ref|ZP_06841039.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] gi|295891543|gb|EFG71329.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] Length = 244 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 86/239 (35%), Positives = 133/239 (55%), Gaps = 14/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+++ DRI+E+G VEL++ T ++ P R + P AL +HG+ Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPE-RDSDPGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL DKP F I +F DF Q A+ I HNA FD+GF++ E + P+ I Sbjct: 60 TTEFLSDKPKFGEIADQFRDFI--QGADLIIHNAPFDIGFLDVEFALLGLPPVSTYCGEI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL+ A++ P RN L++LC R+GI+ +HR+ HGALLDS LL++VY+ M G Q + Sbjct: 118 IDTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + + + P +++ D + + +E H + L K ++W Sbjct: 176 VIDMLGESHAGGDARA-PRVAIDSLD-LVVIAASDDEFAAHQAVLDGLDKAIKGTSVWR 232 >gi|304413386|ref|ZP_07394859.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola LSR1] gi|304284229|gb|EFL92622.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola LSR1] Length = 242 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 137/248 (55%), Gaps = 20/248 (8%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 + R+IV D ETTGL+ + R+IEIGAVE+++ T F V+L P+ R Sbjct: 1 MNTATRRQIVLDTETTGLNKVGAHYQGHRVIEIGAVEMVNRRLTGNHFHVYLKPD-RLVD 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA +HGI+DEFL DKP+F+ F DF + A+ I HNA FD+GF++ E + + ++ Sbjct: 60 PEAYAIHGISDEFLADKPTFADTAKTFLDFI--RGADLIIHNASFDIGFLDYEFRLLEQN 117 Query: 117 ---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I D+L +AR+ P RN+LN+LC RY I S R+ HGALLD+ +L++VY+ Sbjct: 118 SAKIETFCTITDSLLLARQLFPGKRNNLNALCDRYHIDNSKRTLHGALLDAEILAEVYLA 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF--TRITKEELDEHDKTIQTL 231 M G + ++F +T++ + +E+ I + R +EL H ++ + Sbjct: 178 MTGGQTSLSFSMETDQQQQNNKEE-----IKPIVRPTSALKIIYANADELATHQALLEGM 232 Query: 232 GK--NAIW 237 K +W Sbjct: 233 VKKGKCLW 240 >gi|85709813|ref|ZP_01040878.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1] gi|85688523|gb|EAQ28527.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1] Length = 234 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 97/239 (40%), Positives = 143/239 (59%), Gaps = 11/239 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++FD ETTGLD K DR++EIG VE++ +T R++ + P R A +HG+ Sbjct: 1 MREVIFDTETTGLDPKTGDRMVEIGCVEMVGRVETGRSYHAYYNPE-RDMPSAAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL+ KP FS E +F +A +AHNA FD GF+NAEL+RI ++ + R++D Sbjct: 60 SISFLETKPRFSETADELLEFLG--DAPLVAHNAGFDFGFLNAELERIGRESIAMDRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IAR+KHP ++ L++LC RYGI SHR KHGALLD+ LL+ VY+++ GG QI Sbjct: 118 TVAIARKKHPGAKLSLDALCTRYGIDRSHRVKHGALLDAELLAQVYVELT-GGRQIGLEL 176 Query: 186 --KTNEDRFFKEEK---KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 T ED EK + S +P ++ EL H + ++ + K+AIW R Sbjct: 177 AADTVEDPHAAAEKVVETVIGRRSDQPFREPRPHAASENELARHREFVEGI-KDAIWAR 234 >gi|83594940|ref|YP_428692.1| DNA polymerase III, subunit epsilon [Rhodospirillum rubrum ATCC 11170] gi|83577854|gb|ABC24405.1| DNA polymerase III, epsilon subunit [Rhodospirillum rubrum ATCC 11170] Length = 230 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 138/234 (58%), Gaps = 12/234 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD DR++EIG +EL+++ + +++ P R PEA ++HG+ Sbjct: 1 MREIVLDTETTGLDPATGDRLVEIGCIELINHMPSGNDLHLYVNPE-RDMPPEAFRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ FL DKP F+ + EF F E I HNA FD+ F+NAEL R+ + PL SR +D Sbjct: 60 SEAFLADKPLFAEVVDEFLAFIGEDR--LIIHNAAFDMKFLNAELARLKRPPLPMSRALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ + P ++ L++LC+R+G+ S R+KHGAL+D LL++VY++++ GG + Sbjct: 118 TLRMAQARFPGAQASLDALCRRFGVDTSSRTKHGALIDCVLLAEVYLELI-GGREPGLAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 ++ R + P P + EEL H++ ++ + K+ IW R Sbjct: 177 SADKRRDGAAVQVARP------FRAPRPHAASPEELAAHEEFLKKV-KDPIWRR 223 >gi|322831648|ref|YP_004211675.1| DNA polymerase III, subunit epsilon [Rahnella sp. Y9602] gi|321166849|gb|ADW72548.1| DNA polymerase III, epsilon subunit [Rahnella sp. Y9602] Length = 245 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 84/242 (34%), Positives = 131/242 (54%), Gaps = 17/242 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V D ETTG++ + RIIEIGAVE+++ T R F V+L P+ R PEA + Sbjct: 9 RIVVLDTETTGMNKLGVHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPD-RLVDPEAFGV 67 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+F+ + +F ++ + E + HNA FD+GF++ E + ++ Sbjct: 68 HGISDEFLADKPTFADVADDFIEYI--RGGELVIHNATFDIGFMDYEFDMLGRNLPKTET 125 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +I D+L++AR+ P RN+L++L RY I S R+ HGALLDS +L++VY+ M G + Sbjct: 126 FCKITDSLAMARKLFPGKRNNLDALSDRYLIDNSKRTLHGALLDSEILAEVYLMMTGGQT 185 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAI 236 I F T+E T +EL H++ + + G + + Sbjct: 186 SIKF---THEGEQNTGADGLGIQRVARPASGLKVIAATDQELAWHEERLDLVVKKGGSCL 242 Query: 237 WD 238 W Sbjct: 243 WR 244 >gi|300312711|ref|YP_003776803.1| DNA polymerase III subunit epsilon [Herbaspirillum seropedicae SmR1] gi|300075496|gb|ADJ64895.1| DNA polymerase III, epsilon subunit, protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 90/239 (37%), Positives = 136/239 (56%), Gaps = 15/239 (6%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL +N +RI+EIG VE+L+ + + ++ P R + AL +HG+ Sbjct: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T EFL DKP+F I +EF D+ + A+ I HNA FDVGF++AEL + P + Sbjct: 60 TTEFLADKPTFKQIAAEFLDYV--RGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +D+L +A+ HP RN L++LC RYGI+ +HR HGALLD+ LL++VY+ M G + + Sbjct: 118 VDSLQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 ED E K + L + + ++EEL H+ + L K + +W Sbjct: 178 DLGAEEDVSEGEGK-----LELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231 >gi|68172041|ref|ZP_00545326.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Ehrlichia chaffeensis str. Sapulpa] gi|67998534|gb|EAM85303.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Ehrlichia chaffeensis str. Sapulpa] Length = 239 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 93/240 (38%), Positives = 138/240 (57%), Gaps = 11/240 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M +R++V D ETTGLD DR+IEIG VEL+D T + F ++ P R A Sbjct: 1 MSYYKGVREVVLDTETTGLDPDGGDRVIEIGCVELIDRVFTGKVFHEYINPE-RDIPYYA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGIT + LKDKP FS I +F +F + N + HNA FD+ FI EL RINK Sbjct: 60 TKIHGITIDMLKDKPKFSEIADKFLEFID--NGILVIHNAGFDIKFIKMELDRINKSYNS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +++DTL +AR+K P + L++LC+R+ I++ R HGALLD+ LL VY+++M GG Sbjct: 118 DFQVVDTLVLARKKFPGVSSTLDALCRRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176 Query: 180 QINFGFKTNEDRFFKEE-KKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 Q + F N + K N+ + +P +++EE+ +H ++ + KN IW+ Sbjct: 177 QRSLEFSYNNNVSSASNIDKRCENLCI----EPRIYEVSEEEIKKHKMLLEKI-KNPIWN 231 >gi|114563375|ref|YP_750888.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] gi|114334668|gb|ABI72050.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] Length = 242 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 134/242 (55%), Gaps = 20/242 (8%) Query: 8 RKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+++ D ETTG++ RIIEIG VE+++ T RT+ ++ P G+ EA++ Sbjct: 9 RQVILDTETTGMNQAGGPIYVGHRIIEIGCVEVINRRLTGRTYHQYINP-GQAIDEEAIQ 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPL 118 +HGIT++ + ++P F I +F DF + AE +AHNA FDV F++ E ++ Sbjct: 68 VHGITNDRVANEPRFHQIAKDFIDFID--GAEIVAHNANFDVSFMDHEFSKLNPIGPKTK 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D I+D+L+IA+R HP +N+L++LC+RYGI R+ HGALLD+ +L+DVY+ M G Sbjct: 126 DICSILDSLAIAKRLHPGQKNNLDALCRRYGIDNGRRTYHGALLDAEILADVYLIMTGGQ 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAI 236 + N + +E + NI + + +E+ H++ + + K + Sbjct: 186 IKFNL-----SNEKAGQEGGGIKNIDPSAFN-LKVVGASADEILLHEQRLDLIAKSGKCL 239 Query: 237 WD 238 W Sbjct: 240 WR 241 >gi|163752245|ref|ZP_02159446.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99] gi|161327875|gb|EDP99054.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99] Length = 240 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 79/242 (32%), Positives = 130/242 (53%), Gaps = 22/242 (9%) Query: 8 RKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+++ D ETTG++ RIIEIG VE+++ T R + ++ P + EA+ Sbjct: 9 RQVILDTETTGMNQGAGAIFLGHRIIEIGCVEVINRRLTGRHYHEYINPQ-QLIDEEAIA 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPL 118 +HGI++E++ +KP F+ I F +F + AE +AHNA FD+ F++ E + Sbjct: 68 VHGISNEYVANKPKFAEIAQSFIEFID--GAEVVAHNASFDISFMDHEFGLLQPKGPKTA 125 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D I+DTL+IA+ HP +N+L++LCKRYGI S R HGALLD+ +L+DVY+ M G Sbjct: 126 DICAILDTLAIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLLMTGGQ 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI-- 236 +++N + + +R K + +EL +H+ + + K + Sbjct: 186 TKLNLSGDSGGAGGIIRLSQ--------ERTKLKVIAASADELAKHEARLDIVAKGGLCA 237 Query: 237 WD 238 W Sbjct: 238 WR 239 >gi|73667124|ref|YP_303140.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Ehrlichia canis str. Jake] gi|72394265|gb|AAZ68542.1| DNA polymerase III, epsilon subunit :DNA polymerase 3, epsilon subunit [Ehrlichia canis str. Jake] Length = 239 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 93/239 (38%), Positives = 139/239 (58%), Gaps = 9/239 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M +R++V D ETTGLD DRIIEIG VEL+D T + F ++ P R A Sbjct: 1 MSYYKGVREVVLDTETTGLDPDGGDRIIEIGCVELIDRVFTGKVFHEYINPE-RDIPYYA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGIT + LKDKP FS I +F +F N N+ + HNA FD+ FI EL +I KD Sbjct: 60 TKIHGITIDMLKDKPKFSEIADKFLEFVN--NSVLVIHNAGFDIKFIKMELDKIQKDYDS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +++DTL +AR+K P + L++LC+R+ I++ R HGALLD+ LL VY+++M GG Sbjct: 118 DFQVVDTLILARKKFPGVSSTLDALCRRFNISLQDRKFHGALLDATLLGKVYVQLM-GGL 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 Q + F + + + + N +P F +++EE+ +H ++ + KN IW+ Sbjct: 177 QRSLDFSYSNNII---DTSNINNQCEDVAIEPRFYEVSEEEITQHKMLLEKI-KNPIWN 231 >gi|119898345|ref|YP_933558.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] gi|119670758|emb|CAL94671.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 239 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 95/238 (39%), Positives = 137/238 (57%), Gaps = 16/238 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + DR+IEIG VEL++ S T R F V++ P+ R EA+ +HGI Sbjct: 1 MRQIVLDTETTGLDWRTGDRVIEIGCVELVNRSLTGRHFHVYINPD-RGIDAEAVAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T+EFL DKP F+ I F DF ++AE + HNA FDVGF+N EL + + LD + + Sbjct: 60 TEEFLADKPRFAGIVEAFEDFV--RDAELVIHNANFDVGFLNCELGLLGRPKLDVLCAGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +A+ ++P + L++LC RY I HR+ HGALLD+ LL++VY+ M G + Sbjct: 118 IDTLRMAKEQNPGKKASLDALCDRYEIDNGHRTLHGALLDAELLAEVYLAMTRGQESLMI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIW 237 +E + E +P + R R T+ E + H + + K +W Sbjct: 178 AL--DEPAPGQVETDGLPVM----RVGVKVVRATEAECEAHAANLADIAKANKGLCLW 229 >gi|77464814|ref|YP_354318.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Rhodobacter sphaeroides 2.4.1] gi|221640733|ref|YP_002526995.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131] gi|77389232|gb|ABA80417.1| putative DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Rhodobacter sphaeroides 2.4.1] gi|221161514|gb|ACM02494.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides KD131] Length = 229 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 97/237 (40%), Positives = 142/237 (59%), Gaps = 12/237 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + RI+EIGAVEL ++ T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP F++I F DF E A + HNA FD+ F+N EL R L P + +D Sbjct: 60 GDEFLRDKPVFAAIGRAFLDFVGE--ARLVIHNAAFDMKFLNFELGRAGLPRLAPDQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR++ P + L++LC+R+G+ S R KHGALLDS +L++VY++++ GG Q +FG Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELI-GGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++ + P R +P L RIT+EE H + LG AIW + Sbjct: 177 ASS-----AGARPGSPEGEWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 228 >gi|332559710|ref|ZP_08414032.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N] gi|332277422|gb|EGJ22737.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N] Length = 229 Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 97/237 (40%), Positives = 142/237 (59%), Gaps = 12/237 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + RI+EIGAVEL ++ T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP F++I F DF E A + HNA FD+ F+N EL R L P + +D Sbjct: 60 GDEFLRDKPVFAAIGRAFLDFVGE--ARLVIHNAVFDMKFLNFELGRAGLPRLAPDQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR++ P + L++LC+R+G+ S R KHGALLDS +L++VY++++ GG Q +FG Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELI-GGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++ + P R +P L RIT+EE H + LG AIW + Sbjct: 177 ASS-----AGARPGSPEGEWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 228 >gi|285017397|ref|YP_003375108.1| DNA polymerase III, epsilon subunit protein [Xanthomonas albilineans GPE PC73] gi|283472615|emb|CBA15120.1| probable dna polymerase III, epsilon subunit protein [Xanthomonas albilineans] Length = 244 Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 94/239 (39%), Positives = 134/239 (56%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +R++EIGAVELL+ + R F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWKKGNRVVEIGAVELLERRPSGRHFHRYLRPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T EFL DKP F + EF +F + AE + HNA FD+GF++ EL R+ LD + Sbjct: 60 TLEFLADKPEFHEVVDEFLEFID--GAELVIHNASFDLGFLDYELSRLGESYGCILDRAS 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR + P RN L++LCKR G+ +HR HGALLD+ +L +VYI + G +I Sbjct: 118 VVDTLLLARERFPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILCEVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F +LL R + L T EL+ H + TL K A+WD Sbjct: 178 FALVEETTGKTDAHGVAFDMATLLPRPQVLP---TASELEAHQARLDTLRKKAGRALWD 233 >gi|126463657|ref|YP_001044771.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] gi|126105321|gb|ABN77999.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] Length = 229 Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 97/237 (40%), Positives = 142/237 (59%), Gaps = 12/237 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + RI+EIGAVEL ++ T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPE-RPMPNEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL+DKP F++I F DF E A + HNA FD+ F+N EL R L P + +D Sbjct: 60 GDEFLRDKPVFAAIGRAFLDFVGE--ARLVIHNAAFDMKFLNFELGRSGLPRLAPDQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR++ P + L++LC+R+G+ S R KHGALLDS +L++VY++++ GG Q +FG Sbjct: 118 TLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELI-GGRQPDFGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTLGKNAIWDRY 240 ++ + P R +P L RIT+EE H + LG AIW + Sbjct: 177 ASS-----AGARPGSPEGEWRPRPRPVALPPRITEEEAAAHAAFVAKLGDGAIWLKR 228 >gi|221134302|ref|ZP_03560607.1| DNA polymerase III, epsilon subunit [Glaciecola sp. HTCC2999] Length = 240 Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 132/247 (53%), Gaps = 22/247 (8%) Query: 7 MRKIVFDIETTGLDSK-------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MR+IV D ETTG+ + RIIEIG VEL+D T + V++ P + PEA Sbjct: 1 MRQIVLDTETTGMSRESGEHFTHGHRIIEIGCVELVDRKLTGNHYHVYINPQ-QDIDPEA 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + +HGIT+EFL+DKP F I F DF + AE + HNA FDVGF++ E L Sbjct: 60 IAVHGITNEFLEDKPLFKEIAQGFIDFID--GAELVIHNAPFDVGFMDLEFALNPATALT 117 Query: 120 P----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL +A++ P RN+L++LC+ YGI SHR HGALLD+ +L+DVY+ M Sbjct: 118 RTEKFCTVLDTLVLAKKMRPGQRNNLDALCREYGIDNSHRDLHGALLDAEILADVYLLMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---G 232 G ++ T F +K P S LK T +EL EH+ + + Sbjct: 178 GGQETLSLETGTKSSSGFDNVEKLAPRTSALK-----IIHATADELTEHESRLDIVEQAS 232 Query: 233 KNAIWDR 239 N ++ + Sbjct: 233 GNCLYRQ 239 >gi|296284843|ref|ZP_06862841.1| DNA polymerase III epsilon subunit [Citromicrobium bathyomarinum JL354] Length = 240 Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats. Identities = 93/238 (39%), Positives = 135/238 (56%), Gaps = 10/238 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTG+D + R++EIG VEL+D T TF + P R EA +HG+ Sbjct: 8 MREIIFDTETTGIDPRQGHRMVEIGCVELVDRMPTGETFHAYYNPE-RDMPAEAEAIHGL 66 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL DKP F+ EF DF + +AHNA FD F+NAEL+ ++P+ +R ID Sbjct: 67 SAQFLADKPRFADAVDEFLDFVRDDM--LVAHNAGFDFAFLNAELELCTREPICLTRKID 124 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +ARRK+P ++ L++LC RYG+ SHR HGALLD+ LL+ VYI++ GG QI G Sbjct: 125 TLEMARRKNPGGKHSLDALCSRYGVDRSHRVFHGALLDAELLAQVYIELT-GGRQIAMGL 183 Query: 186 --KTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + E E + + R + +++EL H + + + IW R Sbjct: 184 IGELAEGDTAPAEPELAAMLPSGDRPRRPARPHSASEQELAAHAAFLDRMTR-PIWHR 240 >gi|71733799|ref|YP_273952.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. phaseolicola 1448A] gi|289627521|ref|ZP_06460475.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649928|ref|ZP_06481271.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aesculi str. 2250] gi|298486280|ref|ZP_07004343.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554352|gb|AAZ33563.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159287|gb|EFI00345.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868357|gb|EGH03066.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330985658|gb|EGH83761.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012696|gb|EGH92752.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 259 Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats. Identities = 99/256 (38%), Positives = 142/256 (55%), Gaps = 16/256 (6%) Query: 1 MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M +N R IV D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ Sbjct: 1 MALQNLDNRSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---- 114 A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + Sbjct: 60 AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDR 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M Sbjct: 118 ADITQHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177 Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231 G + ++ G ++ + + I L D+ R ++ EL EH+ + T+ Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTI 237 Query: 232 GKN----AIWDRYISS 243 K A+W + + + Sbjct: 238 AKASGAPALWVQMLEA 253 >gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides ATCC 15264] gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides ATCC 15264] Length = 247 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 87/235 (37%), Positives = 133/235 (56%), Gaps = 8/235 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG D + DR+IE+G +E+LD T RTF F+ P R +A+++HGIT Sbjct: 3 REIVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPE-RLIPADAIRVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +KD P F+ I + DF +A IAHNA+FD FI+ E R L +R IDT Sbjct: 62 DDKVKDAPKFAQIVVDLMDFIG--DAPVIAHNAQFDRNFIDHECGRCGHPLLHETRWIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +A+++ P N L++LCKRY I++ R+ HGAL+D+ LL++VY+++ GG + Sbjct: 120 LQLAQKRFPGMANSLDALCKRYKISLVDRTLHGALIDARLLAEVYLEL-KGGKERVLDLS 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-AIWDRY 240 + + L R +PL R+ E + H + K+ ++W+ Y Sbjct: 179 SRRESVAAAAHAAAGGYGL--RPRPLAPRLHASEGEAHAAFLAATLKDLSLWEGY 231 >gi|307610085|emb|CBW99626.1| hypothetical protein LPW_13941 [Legionella pneumophila 130b] Length = 233 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 95/232 (40%), Positives = 138/232 (59%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTG+ + R+IEIG +EL+D T + F ++L P R+ A ++HGI Sbjct: 1 MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123 + EFL+DKP F I +EF F + +E I HNA FDVGF+N+EL+ + NK D RI Sbjct: 60 STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR KHP RN L++LCKRY I +R HGALLD+ +L+ VY+ M G S + Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 T + F + K I L KP+ + +EEL +H ++ + K + Sbjct: 176 --FTEVESSFSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 225 >gi|329894914|ref|ZP_08270713.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088] gi|328922643|gb|EGG29978.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088] Length = 247 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 96/250 (38%), Positives = 136/250 (54%), Gaps = 18/250 (7%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ S R+IEIG VEL++ + R F ++ P R+ P A+++HGI Sbjct: 1 MRQIVLDTETTGLETSDGHRVIEIGCVELINRRLSGRHFHQYINPQ-REVDPGAMEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----- 120 ++EFL+DKP FS+I EF +F + AE I HNA FD+GF++ EL ++ P Sbjct: 60 SNEFLQDKPLFSAIADEFLEFI--KGAELIIHNAPFDIGFLDYELSLESERRAAPMPTVE 117 Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +IDTL +ARRKHP RN L++LC RY + S R HGALLDS +L+DVY+ M G Sbjct: 118 SLCGVIDTLVMARRKHPGQRNTLDALCTRYDVDNSSRDLHGALLDSEILADVYLAMTGG- 176 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK--PLFTRITKEELDEHDKTIQTLGKN-- 234 Q ++ ++ I ++R EE H+ + L Sbjct: 177 -QTALTLQSENREGGEQSNWVTGEIVRVQRAGLSLPVVPANAEESQAHEAYLDLLDNKSD 235 Query: 235 -AIWDRYISS 243 A+W R S Sbjct: 236 GALWRRLDES 245 >gi|304395367|ref|ZP_07377250.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB] gi|304356661|gb|EFM21025.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB] Length = 243 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 142/249 (57%), Gaps = 18/249 (7%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F ++L P+ R Sbjct: 1 MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 PEA +HGI DEFL DKP+FS I EF D+ + AE + HNA FD+GF++ E ++N+ Sbjct: 59 DPEAFGVHGIADEFLADKPAFSDIADEFLDYI--RGAELVIHNAPFDIGFMDYEFSKLNR 116 Query: 116 ---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +I D+L++ARR P RN L++LC RY I + R+ HGALLD+ +L++V++ Sbjct: 117 GIEKTETFCKITDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAEILAEVFL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL- 231 M G + ++F ++ R + + +++ I + ++EE+ H+ + + Sbjct: 177 TMTGGQTSLSFLSESESAR--EAQGESIQRI-VRPASALRVVTASEEEVVAHESRLDLVM 233 Query: 232 --GKNAIWD 238 G + +W Sbjct: 234 KKGGSCLWR 242 >gi|294009991|ref|YP_003543451.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S] gi|292673321|dbj|BAI94839.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S] Length = 230 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 136/232 (58%), Gaps = 7/232 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTG D DR++EIG +ELL+ T RTF + P R A +HG+ Sbjct: 1 MREIIFDTETTGFDPASGDRLVEIGCIELLNRVPTGRTFHAYYNPQ-RSMPAAAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D FL+DKP FS E F +++ +AHNA+FD GF+N EL+ + +R+ID Sbjct: 60 SDSFLRDKPLFSHGVEELLAFL--EDSHLVAHNARFDFGFLNHELRLCGLPEVSMARMID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IAR+ HP +++ L++LC RYGI SHR KHGALLD+ LL+ +YI++ GG QI G Sbjct: 118 TVAIARQLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIELT-GGRQIGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E++ + R +F + EEL+ H + TL K +W Sbjct: 177 AQEEEKRVANMELAAEVAVRPVRPARVFA-ASAEELERHAAFVATLEK-PLW 226 >gi|330889978|gb|EGH22639.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. mori str. 301020] Length = 259 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 99/256 (38%), Positives = 142/256 (55%), Gaps = 16/256 (6%) Query: 1 MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M +N R IV D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ Sbjct: 1 MALQNLDNRSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---- 114 A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + Sbjct: 60 AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDR 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M Sbjct: 118 ADITLHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177 Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231 G + ++ G ++ + + I L D+ R ++ EL EH+ + T+ Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTI 237 Query: 232 GKN----AIWDRYISS 243 K A+W + + + Sbjct: 238 AKASGAPALWVQMLEA 253 >gi|54294270|ref|YP_126685.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens] gi|53754102|emb|CAH15575.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens] Length = 233 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 95/232 (40%), Positives = 138/232 (59%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTG+ + R+IEIG +EL+D T + F ++L P R+ A ++HGI Sbjct: 1 MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123 + EFL+DKP F I +EF F + +E I HNA FDVGF+N+EL+ + NK D RI Sbjct: 60 STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR KHP RN L++LCKRY I +R HGALLD+ +L+ VY+ M G S + Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 T + F + K I L KP+ + +EEL +H ++ + K + Sbjct: 176 --FTEVESSFSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 225 >gi|330959421|gb|EGH59681.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. maculicola str. ES4326] Length = 259 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 98/257 (38%), Positives = 143/257 (55%), Gaps = 16/257 (6%) Query: 1 MIRKNKM-RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M+ KN R +V D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ Sbjct: 1 MVDKNGTHRAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK--- 115 A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + Sbjct: 60 AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDK 117 Query: 116 -DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L++VY+ M Sbjct: 118 ADITRHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILAEVYLAM 177 Query: 175 MVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDEHDKTIQTL 231 G + ++ G ++ + + I L D+ R ++ EL EH+ + T+ Sbjct: 178 TGGQTSLSLAGNASDGNGSGEGGSSRGSEIRRLPADRLPCRVIRASESELAEHEVRMNTI 237 Query: 232 GKN----AIWDRYISSN 244 K A+W + + + Sbjct: 238 AKASGAPALWVQMLEAE 254 >gi|73541877|ref|YP_296397.1| DNA polymerase III subunit epsilon [Ralstonia eutropha JMP134] gi|72119290|gb|AAZ61553.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134] Length = 240 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 87/238 (36%), Positives = 129/238 (54%), Gaps = 15/238 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R ++ P R A+ +HGI Sbjct: 4 MRQIVLDTETTGLNAATGDRLIEIGCVELVNRRLTGRHLHFYVNPE-RDIDEGAIAVHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ + +E DF Q+AE I HNA+FD+GF++ E + + P + Sbjct: 63 TVEFLADKPKFAEVVNEVRDFV--QDAELIIHNAQFDLGFLDMEFRLLGLPPFREHVGSV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL AR+ P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 121 IDTLLEARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLVI 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237 + + S L ++ E+ EH ++ L G +W Sbjct: 181 DMLDGAEAADGSVAE-----SDLSHIVLPVLYASEAEVSEHLAVLKQLDKASGGKTVW 233 >gi|209364170|ref|YP_001425094.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway 5J108-111] gi|212213173|ref|YP_002304109.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212] gi|212218153|ref|YP_002304940.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154] gi|215918940|ref|NP_819360.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493] gi|206583825|gb|AAO89874.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493] gi|207082103|gb|ABS77173.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway 5J108-111] gi|212011583|gb|ACJ18964.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212] gi|212012415|gb|ACJ19795.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154] Length = 236 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 134/241 (55%), Gaps = 16/241 (6%) Query: 5 NKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N MR+IV D ETTGL + RIIEIGA+E+++ T ++ P R +A+++H Sbjct: 3 NLMRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPE-RSIERDAIEIH 61 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DP 120 GITD FL DKP F I +E F + AE I HNA FDVGF+N EL+ + Sbjct: 62 GITDSFLIDKPLFKDIATELISFL--KGAELIIHNAPFDVGFLNHELKLTGQSFKTLTHY 119 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +++DTL+IAR+KHP N+L++LC+RY + S+R HGALLD+ LL+ VY+ M G + Sbjct: 120 CQVLDTLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYLLMTGGQTV 179 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLL-KRDKPLFTRITKEELDEHDKTIQTLGKN--AIW 237 + E + F ++V L RD R E + H +Q L +N +W Sbjct: 180 L------FEQQGFAVASRSVSVRPLGTDRDSLSVIRANAAETEAHRAFLQLLTENGLCLW 233 Query: 238 D 238 + Sbjct: 234 N 234 >gi|52425625|ref|YP_088762.1| DNA polymerase III subunit epsilon [Mannheimia succiniciproducens MBEL55E] gi|52307677|gb|AAU38177.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E] Length = 260 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 91/249 (36%), Positives = 138/249 (55%), Gaps = 16/249 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+I+ D ETTG++ + IIEIGAVE+++ T R +++ P+ R PEA+K+ Sbjct: 9 RQILLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPD-RLVDPEAIKV 67 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDP 120 HGITDE L+DKP F+ + EF DF + AE + HNA FDVGF++ E ++ + D D Sbjct: 68 HGITDEMLEDKPVFTEVAQEFIDFI--KGAELLIHNAPFDVGFMDYEFRKHHIDVKTADI 125 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + DTL +AR+ +P RN L++LC R GI + R HGALLD+ +L DVY+ M G + Sbjct: 126 CSVTDTLQLARQMYPGKRNSLDALCDRLGIDNTKRVLHGALLDAEILGDVYLVMTGGQTS 185 Query: 181 I-NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NA 235 + + D + N + L T EEL H + I+ + K N Sbjct: 186 LFDDNEPELADIHSAKAHILAQNADKVAHHLSLLQ-PTDEELQAHLEYIKLINKKSKDNC 244 Query: 236 IWDRYISSN 244 +W++ + S+ Sbjct: 245 LWEKRLGSD 253 >gi|294340001|emb|CAZ88365.1| DNA polymerase III subunit epsilon [Thiomonas sp. 3As] Length = 239 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 139/245 (56%), Gaps = 17/245 (6%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL+ DRIIE+ VEL + T + + +L P+ R + P+ALK+HG+T Sbjct: 3 RQIVLDTETTGLNPASGDRIIEVAGVELFNRRLTGKHYHAYLNPD-RASHPDALKVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-- 124 +EFL DKP F+ I + +F ++AE I HNA FD F++AEL+R+N+ + Sbjct: 62 EEFLSDKPRFAQIADDLLEFV--RDAEIIIHNAPFDCAFLDAELERLNRPAFKQHVPLVT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++A+ + P N+L++LCKR+GI +HR+ HGALLD+ LL++VY+ + G + Sbjct: 120 DTLAMAKLQFPGKFNNLDALCKRFGIDNAHRTLHGALLDAELLAEVYLSLTRGQESLVID 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRY 240 +T + + + L L + +E H+ +Q L K +IW Sbjct: 180 LETPQQQMSVASHR-------LDHFSLLVRAPSSDEQAAHEAFLQLLDKKSQGKSIWRPG 232 Query: 241 ISSNQ 245 ++Q Sbjct: 233 AEASQ 237 >gi|194364623|ref|YP_002027233.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia R551-3] gi|194347427|gb|ACF50550.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia R551-3] Length = 243 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 91/239 (38%), Positives = 130/239 (54%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +RI+EIG VEL T + ++ P+ + A ++ G+ Sbjct: 1 MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDC-EFEQGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T EFL DKP F+ I EF F + AE I HNA FD+GF++ EL + D Sbjct: 60 TLEFLDDKPDFAQIADEFLAFID--GAELIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL +AR + P RN L++LC+R G+ SHR+ HG LLD+ +L DVYI + G +I Sbjct: 118 VIDTLVMARERFPGQRNSLDALCRRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 FG +E + LL R + + T EL+ H ++ L K A+WD Sbjct: 178 FGLGDDEAGAAGAALQAFDTSKLLPRPRVV---ATPSELEAHTARLERLRKKAGHALWD 233 >gi|226939810|ref|YP_002794883.1| DnaQ [Laribacter hongkongensis HLHK9] gi|226714736|gb|ACO73874.1| DnaQ [Laribacter hongkongensis HLHK9] Length = 240 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 131/240 (54%), Gaps = 17/240 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+ D ETTGLD ++ R+IE+ +E+++ T R +++ P R P+A ++HGI+ Sbjct: 1 MRQIILDTETTGLDPQSHRLIEVAGLEMVNRKLTGRHLHLYIHPQ-RDIDPDAQRVHGIS 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRII 124 + L+ KP F ++ E DF ++AE I HNA FD+GF+NAE R+ +I Sbjct: 60 LDMLEGKPVFKAVAGEIADFL--RDAELIIHNAAFDIGFLNAEFARVGLPATQKVAGNVI 117 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR P RN+L++LC R+ I S+R+ HGAL+D LL+DVY+ M G + Sbjct: 118 DTLAMAREIFPGKRNNLDALCDRFDIDRSNRTLHGALIDCELLADVYLAMTRGQESLEMA 177 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDRY 240 + ++ + L R + + ++ E H + ++ L K +W Y Sbjct: 178 IEPDQGEGG--------TLRLGNRKPLVVQKASEAECAVHSRYLELLDKKAGGPCVWRDY 229 >gi|307297035|ref|ZP_07576851.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum L-1] gi|306877561|gb|EFN08789.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum L-1] Length = 230 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 92/232 (39%), Positives = 133/232 (57%), Gaps = 7/232 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTG D DR++EIG +EL + T RTF + P R A +HG+ Sbjct: 1 MREIIFDTETTGFDPASGDRLVEIGCIELFNRVPTGRTFHAYYNPQ-RSMPAAAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D FL+DKP F E F +++ +AHNA+FD GF+N EL+ + R+ID Sbjct: 60 SDGFLRDKPLFGHGVQELLAFL--EDSHLVAHNARFDFGFLNHELKLCGLPEVSMDRMID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IAR+ HP +++ L++LC RYGI SHR KHGALLD+ LL+ +YI++ GG QI G Sbjct: 118 TVAIARQIHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIELT-GGRQIGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E++ + R +F + EEL+ H + TL K +W Sbjct: 177 AQEEEKLIVNMELAAKAAVRPVRPARVFA-ASAEELERHAAFVATLEK-PLW 226 >gi|332528386|ref|ZP_08404380.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC 19624] gi|332042149|gb|EGI78481.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC 19624] Length = 252 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 137/244 (56%), Gaps = 15/244 (6%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL ++ DRIIE+G VELL+ + + P GR + +AL++HGI Sbjct: 1 MRQIVLDTETTGLSAEGGDRIIELGCVELLNRKLSGNNLHFYFNP-GRDSHEDALRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 ++EFL+DKP F+ + E + Q AE I HNA FDVGF+N EL+ I K L I Sbjct: 60 SNEFLRDKPKFAEVAQEILAYL--QGAELIIHNAAFDVGFLNKELELIGKPALHTFVGGI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL++A+ +P RN L++LC R G+ S R+ HGALLD+ LL+DVYI M G + Sbjct: 118 TDTLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINMTRGQDALLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239 ++ ++ I L + D P+ +++EL H + + K +W + Sbjct: 178 DAGDAVEQAGAGFER----IDLSRFDLPVL-HASEQELAAHGDVLAQIDKACGGKTVWLQ 232 Query: 240 YISS 243 + + Sbjct: 233 RVDA 236 >gi|296135837|ref|YP_003643079.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] gi|295795959|gb|ADG30749.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] Length = 239 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 137/245 (55%), Gaps = 17/245 (6%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL+ DRIIE+ VEL + T + + +L P+ R + P+ALK+HG+T Sbjct: 3 RQIVLDTETTGLNPASGDRIIEVAGVELFNRRLTGKHYHAYLNPD-RASHPDALKVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-- 124 +EFL DKP F I + +F ++AE I HNA FD F++AEL+R+N+ + Sbjct: 62 EEFLSDKPRFEQIADDLLEFV--RDAEVIIHNAPFDCAFLDAELERLNRPAFRQHVPLVT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++A+ + P N+L++LCKR+GI +HR+ HGALLD+ LL++VY+ + G + Sbjct: 120 DTLAMAKLQFPGKFNNLDALCKRFGIDNTHRTLHGALLDAELLAEVYLSLTRGQESLVID 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDRY 240 +T + + + L + +E H+ +Q L K +IW Sbjct: 180 LETPQQQMSVASHR-------LDHFSLPVRAPSSDEQAAHEAFLQLLDKKSQGKSIWRPG 232 Query: 241 ISSNQ 245 ++Q Sbjct: 233 AEASQ 237 >gi|71276291|ref|ZP_00652569.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Dixon] gi|71898480|ref|ZP_00680652.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|170730488|ref|YP_001775921.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M12] gi|71162899|gb|EAO12623.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Dixon] gi|71731793|gb|EAO33852.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|167965281|gb|ACA12291.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 239 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 97/243 (39%), Positives = 136/243 (55%), Gaps = 13/243 (5%) Query: 3 RKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +NK R+IV D ETTGL+ SK +RI+EIGAVELLD + F +L P+ A + Sbjct: 1 MRNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPD-VSFESGAQE 59 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 + G+T EFL DKP FS I EF + N AE I HNA FD+GF++ EL R+ Sbjct: 60 VTGLTMEFLADKPEFSMIADEFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKIT 117 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D + ++DTL +AR ++P RN L++LCKR G+ +HR HGALLD+ +L+DVYI + G Sbjct: 118 DRASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTCGQ 177 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--- 235 +I F + LL R +++ EL+ H+ + L K A Sbjct: 178 EEIGFALPESSCGGVDAASAAFMPDVLLTRP---CVVVSQSELEAHEARLAKLRKIAGHV 234 Query: 236 IWD 238 +WD Sbjct: 235 LWD 237 >gi|294675627|ref|YP_003576242.1| DNA polymerase III subunit epsilon [Rhodobacter capsulatus SB 1003] gi|294474447|gb|ADE83835.1| DNA polymerase III, epsilon subunit [Rhodobacter capsulatus SB 1003] Length = 231 Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 97/235 (41%), Positives = 143/235 (60%), Gaps = 6/235 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + RI+EIGAVEL+++ T RT+ ++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGFEPSEGHRIVEIGAVELMNHVPTGRTYHQYINPE-RAMPQEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F +I +F DF + +++ + HNA FD+ F+NAEL + K L R +D Sbjct: 60 GDDFLRDKPKFGAIAQDFLDFIGD-DSKLVIHNAAFDMKFLNAELGWVQKPLLPMDRALD 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++ARRK P S L++LC+R+GI S R+ HGALLDS +L++VY++++ GG Q FG Sbjct: 119 TLAMARRKFPGSPATLDALCRRFGIDNSARTLHGALLDSEILAEVYLELI-GGRQPGFGL 177 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 D + + R PL R+T+ E + H + LG+ AIW R Sbjct: 178 NI--DPVQAKSAVSSTEWRPRPRPVPLPPRLTEAEAEAHAAFVAKLGEGAIWKRR 230 >gi|15838748|ref|NP_299436.1| DNA polymerase III subunit epsilon [Xylella fastidiosa 9a5c] gi|9107294|gb|AAF84956.1|AE004030_2 DNA polymerase III, epsilon chain [Xylella fastidiosa 9a5c] Length = 239 Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 98/243 (40%), Positives = 141/243 (58%), Gaps = 13/243 (5%) Query: 3 RKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +NK R+IV D ETTGL+ SK +RI+EIGAVELLD + F +L P+ A + Sbjct: 1 MRNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPD-VSFESGAQE 59 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 + G+T EFL DKP FS I EF + N AE I HNA FD+GF++ EL R+ Sbjct: 60 VTGLTMEFLADKPEFSMIADEFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKIT 117 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D + ++DTL +AR ++P RN L++LCKR G+ +HR HGALLD+ +L+DVYI + G Sbjct: 118 DRASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQ 177 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--- 235 +I GF E + +V + + +P +++ EL+ H+ + L K A Sbjct: 178 EEI--GFALPESSRGGVDAASVAFMPDVLLTRPCVV-VSQSELEAHEARLAKLRKIAGHV 234 Query: 236 IWD 238 +WD Sbjct: 235 LWD 237 >gi|54297294|ref|YP_123663.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris] gi|53751079|emb|CAH12490.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris] Length = 233 Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 137/232 (59%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTG+ + R+IEIG +EL+D T + F ++L P R+ A ++HGI Sbjct: 1 MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123 + EFL+DKP F I +EF F + +E I HNA FDVGF+N+EL+ + NK D RI Sbjct: 60 STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR KHP RN L++LCKRY I +R HGALLD+ +L+ VY+ M G S + Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 T + + K I L KP+ + +EEL +H ++ + K + Sbjct: 176 --FTEVESSLSQSKIKTQEIKSLSLKKPVIMKANEEELIQHQSFVEFISKKS 225 >gi|90407281|ref|ZP_01215467.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3] gi|90311564|gb|EAS39663.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3] Length = 236 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 92/238 (38%), Positives = 134/238 (56%), Gaps = 19/238 (7%) Query: 8 RKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R++V D ETTG++ RIIEIG VE+++ T R + V+L P+ R+ PEA+ + Sbjct: 8 RQVVLDTETTGMNKDGTIYLGHRIIEIGCVEVINRRLTGRHYHVYLQPD-REVDPEAVTV 66 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITDEFL+DKP F+ I +F DF + A+ + HNA FDVGF++ E + +NK Sbjct: 67 HGITDEFLQDKPHFADIADDFIDFI--RGADLVIHNAPFDVGFMDQEFRFLNKKTQPTEE 124 Query: 123 I---IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I DTL +A++ P RN+L+ LC RYGI HR+ HGALLD+ +L+DVY+ M G S Sbjct: 125 IATVTDTLVMAKKMFPGKRNNLDILCDRYGINTKHRTLHGALLDAEILADVYLLMSGGQS 184 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 ++N + + +T N R T E H + +Q + N +W Sbjct: 185 KLNLSDDLDNMDSHTRQPRTSNN-------PLCIIRATAAENKAHIERLQLIKDN-LW 234 >gi|153208787|ref|ZP_01947019.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat Q177'] gi|161831371|ref|YP_001596268.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331] gi|165920933|ref|ZP_02219603.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334] gi|120575749|gb|EAX32373.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat Q177'] gi|161763238|gb|ABX78880.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331] gi|165916781|gb|EDR35385.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334] Length = 232 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 133/239 (55%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL + RIIEIGA+E+++ T ++ P R +A+++HGI Sbjct: 1 MRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPE-RSIERDAIEIHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSR 122 TD FL DKP F I +E F + AE I HNA FDVGF+N EL+ + + Sbjct: 60 TDSFLIDKPLFKDIATELISFL--KGAELIIHNAPFDVGFLNHELKLTGQSFKTLTHYCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL+IAR+KHP N+L++LC+RY + S+R HGALLD+ LL+ VY+ M G + + Sbjct: 118 VLDTLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYLLMTGGQTVL- 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLL-KRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238 E + F ++V L RD R E + H +Q L +N +W+ Sbjct: 177 -----FEQQGFAVASRSVSVRPLGTDRDSLSVIRANAAETEAHRAFLQLLTENGLCLWN 230 >gi|329114274|ref|ZP_08243036.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001] gi|326696350|gb|EGE48029.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001] Length = 224 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 91/233 (39%), Positives = 131/233 (56%), Gaps = 12/233 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTGLD DR+IEI A+EL+ T RTF + P R EA ++HG T Sbjct: 3 RSILFDTETTGLDPATGDRVIEIAALELVGDLPTGRTFHKLIDPE-RDVPEEASRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ KP F+ + +F F + IAHNA+FD GF+NAEL+R K L R++DT Sbjct: 62 RADLEGKPKFAEVADDFLAFVGDD--PLIAHNARFDFGFMNAELKRAGKKTLGLDRMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +AR + P N L++LC+R+G+ +S R+ H ALLD LL+DVY+++M GG Q G Sbjct: 120 LDMARERFPGMPNSLDALCRRFGVDLSARTTHNALLDCKLLADVYVELM-GGRQHGLGLM 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + + + N +++ + T +EL H + L K IW+R Sbjct: 179 AEDGQLPSVMYEGPVNRKVVR------VQPTPQELAAHAAFVAGL-KEPIWER 224 >gi|162148736|ref|YP_001603197.1| DNA polymerase III epsilon subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209545498|ref|YP_002277727.1| DNA polymerase III subunit epsilon [Gluconacetobacter diazotrophicus PAl 5] gi|161787313|emb|CAP56907.1| putative DNA polymerase III epsilon subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209533175|gb|ACI53112.1| DNA polymerase III, epsilon subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 224 bits (571), Expect = 9e-57, Method: Composition-based stats. Identities = 90/231 (38%), Positives = 129/231 (55%), Gaps = 10/231 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTGLD + DR+IEI A+EL+ T R F V + P+ R EA ++HG T Sbjct: 3 RAILFDTETTGLDPARGDRVIEIAALELVGDLPTGRHFHVLIHPD-RDIPEEASRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ KP F I +F F + + IAHNA+FD GF+NAEL+R + L R++DT Sbjct: 62 LADLEGKPRFHEIADDFLAFIGQDD--LIAHNARFDFGFLNAELKRAERPALSLDRMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L IAR ++P N L++LC+R+ I +S R+ H ALLD LL++VY+++M GG Q G Sbjct: 120 LDIARDRYPGLPNSLDALCRRFSIDLSARTTHNALLDCRLLAEVYLELM-GGRQRGLGLT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + + L P T++EL H + + + K IW Sbjct: 179 VQDGGGAQVSYAY----DLAGARTPRLIVPTEQELAAHGRFLDKI-KEPIW 224 >gi|170750672|ref|YP_001756932.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans JCM 2831] gi|170657194|gb|ACB26249.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans JCM 2831] Length = 240 Score = 224 bits (571), Expect = 9e-57, Method: Composition-based stats. Identities = 98/243 (40%), Positives = 142/243 (58%), Gaps = 10/243 (4%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+IV D ETTG ++K DR+IEIGAVELL++ T RTF + P R S A +HG+ Sbjct: 2 LREIVLDTETTGTEAKGGDRLIEIGAVELLNHIPTGRTFHRYCNPQ-RPVSEGAFNVHGL 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122 +D FL DKP F+ I E F + + HNA FDVGF+N E R+ + P + Sbjct: 61 SDAFLADKPVFAEIVGELLAFLA--DGRLVIHNAPFDVGFLNMEYARLGANAPPPIQLED 118 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +ARRKHP + N+L++LC RYGI + R+KHGALLD+ +L++VY++++ GG Q + Sbjct: 119 VVDTLPMARRKHPGAANNLDALCARYGIDNTRRTKHGALLDAQILAEVYVELL-GGKQTS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 G E + + +P +R+T E HD +LG AIW YI Sbjct: 178 LGL--LEAEKAAPAAGSTALAAAPAAPRPYRSRLTDAERARHDSFRASLGPAAIWADYIG 235 Query: 243 SNQ 245 ++ Sbjct: 236 ADD 238 >gi|154245775|ref|YP_001416733.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] gi|154159860|gb|ABS67076.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] Length = 240 Score = 224 bits (571), Expect = 9e-57, Method: Composition-based stats. Identities = 94/240 (39%), Positives = 138/240 (57%), Gaps = 7/240 (2%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR++EIG VE+++ T F V++ P R EA +HG+ Sbjct: 1 MREIVLDTETTGLEAYGGDRLVEIGCVEMVNRILTGTVFHVYINPE-RDMPVEAFNVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL DKP F + EF +F E + HNA FD+GF+NAEL+R+ + + R++D Sbjct: 60 SAEFLSDKPKFKDVADEFLNFIAED--TLVIHNAAFDIGFLNAELERLGRPTIARDRVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++ARRKHP N L+ L RYGI S R KHGALLD+ LL++VY +++ G G Sbjct: 118 TLALARRKHPGGGNRLDDLMNRYGIDSSRRVKHGALLDAELLAEVYGELLGGKQASLIGL 177 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSNQ 245 + + V + R PL R+T E + H I ++G+ A+W +Y + Sbjct: 178 VEDTSEA---PRLVVAAAAAHPRPVPLAPRLTAAEAEAHAAFIASMGEKALWLKYADVPE 234 >gi|52841614|ref|YP_095413.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628725|gb|AAU27466.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 251 Score = 224 bits (571), Expect = 9e-57, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 137/232 (59%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTG+ + R+IEIG +EL+D T + F ++L P R+ A ++HGI Sbjct: 19 MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 77 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123 + EFL+DKP F I +EF F + +E I HNA FDVGF+N+EL+ + NK D RI Sbjct: 78 STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 135 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR KHP RN L++LCKRY I +R HGALLD+ +L+ VY+ M G S + Sbjct: 136 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 193 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 T + + K I L KP+ + +EEL +H ++ + K + Sbjct: 194 --FTEVESSLSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS 243 >gi|114332140|ref|YP_748362.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91] gi|114309154|gb|ABI60397.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91] Length = 234 Score = 224 bits (571), Expect = 9e-57, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 140/239 (58%), Gaps = 15/239 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR + D ETTGLD RI+EI AVE+ + T R F +L P GR++ AL++HG+ Sbjct: 1 MRYVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNP-GRESDEGALRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 + EFL+DKP+F I SEF +F ++AE + HNA FDVGFIN EL I +P+ +I Sbjct: 60 SREFLQDKPAFQEICSEFLEFI--EDAEILIHNAPFDVGFINRELGLIRLEPMHNYCLQI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +A+ HP RN+L++LC+RY I +HR+ HGALLD+ LL++VY+ M G + Sbjct: 118 VDTLMLAKELHPGKRNNLDALCERYQIDNAHRTLHGALLDAELLAEVYLAMTRGQESL-- 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG----KNAIWD 238 E + K + + + +++ EL+ HD+ ++ + N +W+ Sbjct: 176 ---LMEPEVPEAGKSGDSRLRATENLTLIVQPVSQTELELHDRLLERINTESKGNCLWN 231 >gi|28199104|ref|NP_779418.1| DNA polymerase III subunit epsilon [Xylella fastidiosa Temecula1] gi|71901532|ref|ZP_00683617.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|182681831|ref|YP_001829991.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M23] gi|28057202|gb|AAO29067.1| DNA polymerase III epsilon chain [Xylella fastidiosa Temecula1] gi|71728719|gb|EAO30865.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|182631941|gb|ACB92717.1| DNA polymerase III, epsilon subunit [Xylella fastidiosa M23] gi|307578082|gb|ADN62051.1| DNA polymerase III subunit epsilon [Xylella fastidiosa subsp. fastidiosa GB514] Length = 239 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 97/243 (39%), Positives = 140/243 (57%), Gaps = 13/243 (5%) Query: 3 RKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +NK R+IV D ETTGL+ SK +RI+EIGAVELLD + F +L P+ A + Sbjct: 1 MRNKKRQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPD-VSFESGAQE 59 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPL 118 + G+T EFL DKP FS I +F + N AE I HNA FD+GF++ EL R+ Sbjct: 60 VTGLTMEFLADKPEFSMIADKFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKIT 117 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D + ++DTL +AR ++P RN L++LCKR G+ +HR HGALLD+ +L+DVYI + G Sbjct: 118 DRASVLDTLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQ 177 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA--- 235 +I GF E + +V + + +P ++ EL+ H+ + L K A Sbjct: 178 EEI--GFALPESSRGGVDAASVAFMPDVLLTRPCVV-ASQSELEAHEARLAKLRKIAGHV 234 Query: 236 IWD 238 +WD Sbjct: 235 LWD 237 >gi|83749368|ref|ZP_00946363.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551] gi|207742873|ref|YP_002259265.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum IPO1609] gi|83723945|gb|EAP71128.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551] gi|206594267|emb|CAQ61194.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum IPO1609] Length = 242 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 88/240 (36%), Positives = 131/240 (54%), Gaps = 15/240 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R ++ P R+ P A+ +HGI Sbjct: 1 MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDPGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T+EF+ DKP F+ + +E D+ Q AE I HNA FD+GF++ E +R+ Sbjct: 60 TNEFVADKPKFAEVVAEIRDYV--QGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGH 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL ARR P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 118 IDTLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239 + E + L + P+ T+ E H ++ + G +W R Sbjct: 178 DMLEGGETAATEAA----AVDLSGLELPILL-ATEVEAAAHATVLKEIDKASGGKTVWSR 232 >gi|94676582|ref|YP_588911.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219732|gb|ABF13891.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 240 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 137/241 (56%), Gaps = 14/241 (5%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV DIETTG++ RIIEIGAVE+++ T + F V+L P R EA K+ Sbjct: 3 RQIVLDIETTGINKLGVHYYGHRIIEIGAVEIINRRITGKNFHVYLNPE-RFIDQEAFKI 61 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS- 121 HGI++ FLKDKP+F+ + + F ++ +E + H+A FD+GFI+ E + +N+ + + Sbjct: 62 HGISNNFLKDKPTFAQVADKLITFISQ--SELVIHHAPFDIGFIDYEFKLLNRSMISKTF 119 Query: 122 -RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ DTL +AR+ P RN L++LC RY I HR+KHGALLD+ +L+++Y+ M G + Sbjct: 120 VQVTDTLLLARKIFPGKRNSLDALCNRYHIKNIHRTKHGALLDAKILAEIYLIMTGGQTS 179 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAIW 237 INF T E ++ K L DK +EL EH + + K +W Sbjct: 180 INFNL-TQESNIEQKYKGKNIYFPLSHEDKLKVIYANNKELSEHRNILDRIEKQNSKCLW 238 Query: 238 D 238 Sbjct: 239 K 239 >gi|332286832|ref|YP_004418743.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7] gi|330430785|gb|AEC22119.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7] Length = 236 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 126/239 (52%), Gaps = 15/239 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD + R++E+ VE+ + S T R ++L P GR + PEAL +HG+ Sbjct: 1 MRQIVLDTETTGLDPAQGHRVVELACVEMENRSLTGRHLHLYLNP-GRDSDPEALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL P F + + D+ ++AE I HNA FDV F+NAEL R + +I Sbjct: 60 TTEFLSGHPRFEEVAQQLVDYV--KDAEVIIHNAAFDVKFLNAELTRAGLPVFNSLCGKI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR HP RN L++LC+RYGI+ +HR+ HGALLDS LL+DV++ M G + Sbjct: 118 TDSLLHARELHPGKRNSLDALCERYGISNAHRTLHGALLDSELLADVWLAMTRGQDALLM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWD 238 F+ + + + EL H+ + L K +W Sbjct: 178 DFEDDGSTGANGM-----RLEQFDASTLKVVLAGEAELQAHNDYLAGLDKTAGTPCVWR 231 >gi|58040389|ref|YP_192353.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H] gi|58002803|gb|AAW61697.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H] Length = 228 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 97/235 (41%), Positives = 133/235 (56%), Gaps = 13/235 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTG D DRIIEI A+EL+D T + V + P R EA K+HG Sbjct: 3 RSILFDTETTGFDPDMGDRIIEIAALELIDDLPTGEAYHVLIHPE-RDIPAEATKVHGFR 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 E L+ KP FS + F +F ++ IAHNA+FD F+NAEL+ ++PLD SR ID Sbjct: 62 IEDLEGKPIFSEVADGFLEFIG--DSPMIAHNARFDFKFVNAELKACGREPLDYASRAID 119 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +AR+K+P L++LC+R+GI +S R H ALLD LL++VY+++M GG Q G Sbjct: 120 TVEMARKKYPGLPASLDALCRRFGIDLSQRGTHNALLDCKLLAEVYVELM-GGRQRGLGL 178 Query: 186 KTNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 R E + N K P T EEL H+ + T+ K+A+W R Sbjct: 179 AGPSRSRSMTEGINALANRKPRKMAPP-----TAEELQAHEAFVSTI-KDAVWLR 227 >gi|152980051|ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthinobacterium sp. Marseille] gi|151280128|gb|ABR88538.1| DNA polymerase III epsilon subunit [Janthinobacterium sp. Marseille] Length = 235 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 84/186 (45%), Positives = 120/186 (64%), Gaps = 6/186 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + DRIIEIG VEL++ T F ++ P R + AL +HG+ Sbjct: 1 MRQIVLDTETTGLNPRSGDRIIEIGCVELVNRRLTGNNFHHYINPE-RDSEEGALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRI 123 T EFL DKP F+ I +EF D+ + A+ I HNA FD+GF++AEL+R+N + Sbjct: 60 TTEFLSDKPKFAEIAAEFRDYIS--GADVIIHNAPFDIGFLDAELKRVNTPSFKEHVGEV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL A+ HP RN L++LC RYGI+ +HR+ HGALLD+ LL++VY+ M G + ++ Sbjct: 118 IDTLVQAKEMHPGKRNSLDALCDRYGISNAHRALHGALLDAELLAEVYLAMTRGQNSLSM 177 Query: 184 GFKTNE 189 ++ Sbjct: 178 DLGASD 183 >gi|326386170|ref|ZP_08207794.1| DNA polymerase III, epsilon subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326209395|gb|EGD60188.1| DNA polymerase III, epsilon subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 230 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 95/235 (40%), Positives = 136/235 (57%), Gaps = 8/235 (3%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD +N DR++EIG VEL++ T F + P+ R EA +HG+ Sbjct: 1 MREIVFDTETTGLDPRNGDRLVEIGCVELVNRIATGSVFHCYFNPD-RDMPAEAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL DKP FS +E DF +A +AHNA FD GF+N+EL + R++D Sbjct: 60 SAAFLSDKPKFSERAAELLDFLG--DAPLVAHNAGFDFGFLNSELTFCGMGEVSRDRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IARRKHP ++ L++LC RYGI SHR+KHGALLD+ LL+ +Y+++M GG QI Sbjct: 118 TVAIARRKHPGAKLSLDALCSRYGIDRSHRTKHGALLDAELLAQLYVELM-GGRQIGLEL 176 Query: 186 KTNEDRFF-KEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + E+ T P ++ R + EL H + + + +W R Sbjct: 177 AADTLTVAVSEDAPTRPQLARPFRPA-RPHSASVAELARHAEFMAGFA-DPLWSR 229 >gi|94311147|ref|YP_584357.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34] gi|93354999|gb|ABF09088.1| DNA polymerase III epsilon subunit [Cupriavidus metallidurans CH34] Length = 241 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 136/245 (55%), Gaps = 15/245 (6%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + DR+IEIG VEL++ T R ++ P R +A+ +HGI Sbjct: 1 MRQIVLDTETTGLNHATGDRLIEIGCVELVNRRLTGRHLHFYVNPE-RDIHEDAIAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T +FL DKP F+ I ++ DF Q+AE I HNA FD+GF++ E QR++ P + Sbjct: 60 TLDFLADKPKFAEIVNDVRDFV--QDAELIIHNAPFDLGFLDMEFQRLDLPPFRQHASNV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL AR+ P RN L++LC R G++ SHR+ HGALLD+ LL++VY+ M G Q + Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGVSNSHRTLHGALLDAELLAEVYLAMTRG--QNSL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239 + E ++ ++S + L ++ E+ H ++ L G +W Sbjct: 176 VIDMLDGAATDGETRSTADLSAMTLPVLL---ASEAEISAHMGVLKELDKASGGKTVWQE 232 Query: 240 YISSN 244 + Sbjct: 233 ASPAE 237 >gi|58696733|ref|ZP_00372277.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58698126|ref|ZP_00373049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225629990|ref|YP_002726781.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi] gi|58535372|gb|EAL59448.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58537085|gb|EAL60207.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila simulans] gi|225591971|gb|ACN94990.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi] Length = 231 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 94/241 (39%), Positives = 144/241 (59%), Gaps = 11/241 (4%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++K+R++V D ETTGLD++ RIIEIG VEL++ T + F +L P R + K Sbjct: 1 MESKLRELVLDTETTGLDTESGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFK 59 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI++EFL+DKP FS + EF DF + N + HNA+FDV F+N EL ++N + Sbjct: 60 IHGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELSKLNAGLISSD 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R++DTL +AR+K S LN+LCKR+ I++ +R HGAL+D+ LL+ VY+++ G Sbjct: 118 RVLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTF 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F + N+D + V N++ P EE+DEH K + + N +W++YI Sbjct: 178 LFDNECNQDSNSTFVQHKVRNLT------PREHSPNSEEIDEHKKLLDKIN-NTLWNKYI 230 Query: 242 S 242 Sbjct: 231 E 231 >gi|258541965|ref|YP_003187398.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO 3283-01] gi|256633043|dbj|BAH99018.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636100|dbj|BAI02069.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639155|dbj|BAI05117.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642209|dbj|BAI08164.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645264|dbj|BAI11212.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648319|dbj|BAI14260.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651372|dbj|BAI17306.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654363|dbj|BAI20290.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter pasteurianus IFO 3283-12] Length = 224 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 91/232 (39%), Positives = 128/232 (55%), Gaps = 12/232 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTGLD DR+IEI A+EL+ T R F + P R EA ++HG T Sbjct: 3 RSILFDTETTGLDPATGDRVIEIAALELVGDLPTGRNFHTLIDPE-RDVPEEASRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ KP F+ I +F F + IAHNA+FD GF+NAEL+R K L R++DT Sbjct: 62 RADLEGKPKFAEIADDFLAFVGDD--PLIAHNARFDFGFMNAELKRAGKKTLGLDRMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +AR + P N L++LC+R+G+ +S R+ H ALLD LL+DVY+++M GG Q G Sbjct: 120 LDMARERFPGMPNSLDALCRRFGVDLSARTTHNALLDCKLLADVYVELM-GGRQHGLGLM 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + + + N K + + T EEL H + L K +W+ Sbjct: 179 AEDGQLPSVMYEGPVN------RKAVRVQPTAEELAAHAAFVAGL-KEPVWE 223 >gi|42520014|ref|NP_965929.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034422|ref|ZP_01314429.1| hypothetical protein Wendoof_01000768 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|42409751|gb|AAS13863.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 231 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 95/241 (39%), Positives = 144/241 (59%), Gaps = 11/241 (4%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++K+R+IV D ETTGLD++ RIIEIG VEL++ T + F +L P R + K Sbjct: 1 MESKLREIVLDTETTGLDTESGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFK 59 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI++EFL+DKP FS + EF DF + N + HNA+FDV F+N EL ++N + Sbjct: 60 IHGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELSKLNARLISSD 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R++DTL +AR+K S LN+LCKR+ I++ +R HGAL+D+ LL+ VY+++ G Sbjct: 118 RVLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTF 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F + N+D + V N++ P EE+DEH K + + N +W++YI Sbjct: 178 LFDNECNQDSNSTFVQHKVRNLT------PREHLPNSEEIDEHKKLLDKIN-NTLWNKYI 230 Query: 242 S 242 Sbjct: 231 E 231 >gi|88800079|ref|ZP_01115649.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297] gi|88777205|gb|EAR08410.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297] Length = 238 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 89/243 (36%), Positives = 134/243 (55%), Gaps = 18/243 (7%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGL+ K DRI+E+G VE++D T R F ++ P R E + +HGI Sbjct: 1 MRQVVLDTETTGLNPTKGDRIVEVGCVEMVDRKLTGRHFHYYINPE-RDIPDEVVAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----- 120 ++ +KD P F I E W + + AE + HNA FD+GF+NAE +R ++ +P Sbjct: 60 DNDKVKDSPKFRDIAVELWTWL--EGAELVIHNAAFDMGFLNAEFERFAQEQREPFEKLE 117 Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++DTL +AR KHP S+ L++LCKRYGI SHR+ HGALLDS +L+DVY+ + G Sbjct: 118 TVCGVLDTLKVARDKHPGSKVSLDALCKRYGIDNSHRTLHGALLDSEILADVYLMLTGGQ 177 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKN 234 + + + + + + S + + + EL H+ I L GK+ Sbjct: 178 TALILDDSSESGSSDQAVDVSALDDSGG---HLITVQPSSAELAAHEAFIDMLAEKSGKD 234 Query: 235 AIW 237 W Sbjct: 235 VRW 237 >gi|295691552|ref|YP_003595245.1| DNA polymerase III subunit epsilon [Caulobacter segnis ATCC 21756] gi|295433455|gb|ADG12627.1| DNA polymerase III, epsilon subunit [Caulobacter segnis ATCC 21756] Length = 237 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 132/235 (56%), Gaps = 9/235 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTG D K DR++EIG +E++D+ T R+F + P R EA K+HG++ Sbjct: 3 REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDP-LRDMPAEAEKVHGLS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 FL KP F I F +F ++ +AHNA FD F+N EL++ + P+ R +DT Sbjct: 62 SAFLTGKPKFHEIADRFVEFVG--DSVVVAHNAAFDRQFVNFELEKCGRAPIREDRWVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LCKR+ I++ R KHGAL+D+HLL++VY+++ GG + Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLESRDKHGALIDAHLLAEVYLEL-QGGKERALELT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKNAIWDRY 240 + S R +PL R T E + H ++ L A+W ++ Sbjct: 179 HVVETLAVSAAIQG---SYGSRPRPLAPRSTDAEREVHAAWVRKNLKDQALWIKF 230 >gi|21230449|ref|NP_636366.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769557|ref|YP_244319.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. campestris str. 8004] gi|188992765|ref|YP_001904775.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. campestris str. B100] gi|21112012|gb|AAM40290.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574889|gb|AAY50299.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. campestris str. 8004] gi|167734525|emb|CAP52735.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. campestris] Length = 245 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 90/239 (37%), Positives = 138/239 (57%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLRPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T EFL DKP F+ + EF + + AE I HNA FD+GF++ EL + +D + Sbjct: 60 TLEFLADKPVFAEVVEEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDQFGRIIDRAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 FG + + + + + L +P +T EL H+ ++ L K A+WD Sbjct: 178 FG-AMDAGQHAEGGEGMIAFDPSLLLPRPRVV-VTPSELQAHEARLERLRKKAGRALWD 234 >gi|329847376|ref|ZP_08262404.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum C19] gi|328842439|gb|EGF92008.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum C19] Length = 229 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 136/232 (58%), Gaps = 8/232 (3%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +IV D ETTG+D + R+IEIG +E+ D T RTF F+ P R+ P+A+++HGI++ Sbjct: 4 EIVLDTETTGIDHRKGHRLIEIGCIEIEDLLPTGRTFHHFVDPE-REIEPDAIRVHGISN 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ KP F I E +F ++ IAHNA FD GFIN E++R+++ + IDTL Sbjct: 63 EKVRGKPKFGQIADELCEFIGDKR--IIAHNAAFDRGFINMEMERLSRVCHPDDQWIDTL 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR K P N L++LC+R+ I+++ R HGAL+D+ LL+ VY++++ GG + + Sbjct: 121 ELARNKFPGMANSLDALCRRFNISLAERDLHGALIDARLLASVYLELL-GGKERGLDLEM 179 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKNAIWD 238 R E + IS R +PL RIT E+ H+ + L ++W Sbjct: 180 ASARI--EAVQVANPISYGARPRPLAPRITAAEVAAHEAFVAKYLKDKSLWK 229 >gi|261253702|ref|ZP_05946275.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] gi|260937093|gb|EEX93082.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891] Length = 223 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 87/226 (38%), Positives = 131/226 (57%), Gaps = 13/226 (5%) Query: 18 GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77 G + RIIEIGAVE+++ T R F V++ P+ R EA+++HGITDEFL DKP + Sbjct: 6 GPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPD-RDIQSEAVEVHGITDEFLVDKPEYQ 64 Query: 78 SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSRIIDTLSIARRKH 134 + +EF DF + AE +AHNA FD GF++ E ++ D ++ DTL++A++ Sbjct: 65 DVHAEFLDFI--KGAELVAHNAPFDTGFMDYEFGMLDPTIGKTDDYCKVTDTLAMAKKIF 122 Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194 P RN+L+ LC RYGI SHR+ HGALLD+ +L+DVY+ M G + + F ++ D + Sbjct: 123 PGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLQFNAGSSNDDGGE 182 Query: 195 EEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN--AIWD 238 K+ R R T +E+D H+K + + KN +W Sbjct: 183 AIKRAASG-----RKALKVLRATADEIDAHNKRLDIVEKNGSCLWR 223 >gi|237748501|ref|ZP_04578981.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13] gi|229379863|gb|EEO29954.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13] Length = 247 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 94/240 (39%), Positives = 136/240 (56%), Gaps = 17/240 (7%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL + N DRIIEIG VE+L T F ++ P R + P+AL +HG+ Sbjct: 1 MRQIVLDTETTGLYANNGDRIIEIGCVEVLSRHVTENHFHQYINPE-RDSHPDALAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124 T EFL DKP F+ I F D+ + AE I HNA FD+GF+NAEL R+ ++ Sbjct: 60 TTEFLSDKPKFAEIAQAFCDYI--RGAELIIHNAPFDIGFLNAELARLGMPKVEEIAECI 117 Query: 125 -DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L AR P RN L++LC+R+ I+ +HR+ HGALLDS LL++VY+ M G + Sbjct: 118 TDSLVKARDMFPGRRNSLDALCERFEISNAHRTLHGALLDSELLAEVYLAMTRGQETLEI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-----AIWD 238 G + E+ + + NI + + T+EEL H++ + + K+ +W Sbjct: 178 GGMSIEEEEAAAKAAPLSNIHI------VVLAATEEELARHEEVLDDIEKSNKGAPCVWR 231 >gi|30248167|ref|NP_840237.1| DNA polymerase III (epsilon chain) protein [Nitrosomonas europaea ATCC 19718] gi|30180052|emb|CAD84052.1| probable DNA polymerase III (epsilon chain) protein [Nitrosomonas europaea ATCC 19718] Length = 232 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 93/239 (38%), Positives = 136/239 (56%), Gaps = 15/239 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR + D ETTGLD RI+EI AVE+ + T+R F +L P GR++ AL++HG+ Sbjct: 1 MRYVFLDTETTGLDPALGHRIVEIAAVEVCNRRLTDRHFHRYLNP-GRESDEGALRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T EFL+DKP F + SEF +F +AE HNA FDVGFIN EL I + + +I Sbjct: 60 TREFLRDKPVFQDVCSEFLEFIA--DAEIFIHNAPFDVGFINRELDLIRFESMQNHCLQI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +A+ HP RN+L++LC+RY I SHR+ HGALLD+ LL++VY+ M G + Sbjct: 118 IDTLVLAKELHPGKRNNLDALCERYQIDNSHRTLHGALLDAELLAEVYLAMTRGQESLLM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG----KNAIWD 238 R + P + ++ + T+ EL+ H + ++ + N +W+ Sbjct: 178 EMDAPASR-----QADNPAVGKVENLALIVQPATQAELELHSRLVERINAESKGNCLWN 231 >gi|326405243|ref|YP_004285325.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301] gi|325052105|dbj|BAJ82443.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301] Length = 235 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 85/241 (35%), Positives = 131/241 (54%), Gaps = 15/241 (6%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++FD ETTGL+ DR+IE+ A+EL + T + F + P R EA ++HG+T Sbjct: 3 RAVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTLIDPE-RDIPAEASRVHGMT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + KP F+ I +E +FF E +AHNA FD GF++AE RI + LD +R+IDT Sbjct: 62 SADVAGKPKFAEIAAELLEFFAED--PLVAHNAPFDFGFLDAEFARIGRAALDRARMIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LC+R+ I +S R+ H ALLD LL++VY+++ GG Q Sbjct: 120 LALAKQRFPGMPNSLDALCRRFDIDLSARTTHNALLDCKLLAEVYVELT-GGRQRGLDLA 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW--DRYISSN 244 E + P P + EL H+ I+ L K +W D+ ++ Sbjct: 179 AESTIRLVEYRSEGPR-------TPRPIVASAAELAAHEAFIEKL-KEPVWRLDQAAPTD 230 Query: 245 Q 245 Q Sbjct: 231 Q 231 >gi|88813349|ref|ZP_01128587.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231] gi|88789407|gb|EAR20536.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231] Length = 245 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 131/241 (54%), Gaps = 13/241 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ R+IEIG EL + RTF +L P+ R+ P A+++HGI Sbjct: 1 MRQIVLDTETTGLEPADGHRVIEIGCYELCYRRASGRTFHHYLNPD-REVEPGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 T+EFL DKP F I ++F +F ++AE I HNA FDVGF++ E R+ D + Sbjct: 60 TNEFLADKPRFCDIATDFIEFI--RDAELIIHNAPFDVGFLDYEFSRLTGSWGRLADYCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR +HP RN L++LC RY + + RS HGALLD+ LL++VY+ M G + ++ Sbjct: 118 VTDTLALARERHPGQRNSLDALCTRYAVDNAQRSLHGALLDAQLLAEVYLLMTGGQTALS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 V + R + R + E EH + L G +W Sbjct: 178 LESGAGLSADLA-LVGGVRRLDPA-RPRLPVVRASSAEQAEHRHWLDELDQAVGGCCVWR 235 Query: 239 R 239 + Sbjct: 236 Q 236 >gi|78485275|ref|YP_391200.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena XCL-2] gi|78363561|gb|ABB41526.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena XCL-2] Length = 231 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 135/234 (57%), Gaps = 14/234 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTG D KN D+IIEIGAVEL+ T+ + ++ P R +A+++HGI Sbjct: 1 MRQILLDTETTGFDPKNGDKIIEIGAVELIKRKLTHNNYHQYIQPE-RDVPIDAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL----DPS 121 T+EFL KP F+ + +F ++ AE I HNA FDVGFIN EL ++ + D Sbjct: 60 TNEFLVGKPIFADVVDDFMEYVA--GAELIIHNAPFDVGFINQELSQLPNNKWGKIEDHC 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I D+L +AR+ +P RN L++LCKR+ I S+R+ HGALLDS +L+DVY+ M G + + Sbjct: 118 TITDSLKMARKAYPGQRNSLDALCKRFLIDNSNRTLHGALLDSEILADVYLAMTGGQTAL 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 +E+ + + N +R + + EEL H+ +Q + + Sbjct: 178 IL---ADEEGSSSDASRVNLNT---QRAPLKVLKASAEELAAHNGKLQQISEKC 225 >gi|84501202|ref|ZP_00999407.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola batsensis HTCC2597] gi|84390493|gb|EAQ02981.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola batsensis HTCC2597] Length = 230 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 96/235 (40%), Positives = 142/235 (60%), Gaps = 8/235 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL ++ T T+ V++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPEQGDRIVEIGAVELWNHVPTGETYHVYINPE-RSMPQEAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+FL+DKP F + F +F ++A+ + HNA FD+ FINAEL +N + + ID Sbjct: 60 GDDFLRDKPVFRDVARGFVEFV--KDAKLVIHNASFDMKFINAELGWLNIPAIPWDQAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL+IAR++ P S L++LC+R+GI S R+ HGALLDS +L++VY++++ GG Q +F Sbjct: 118 TLAIARQRFPGSPASLDALCRRFGIDNSARTLHGALLDSEILAEVYLELI-GGRQPDFAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + + + R PL RIT EE H + ++ LG A+W Y Sbjct: 177 SAS---TGTQTGTDTADWRPKPRPTPLPPRITAEEAAAHAEFVERLGDGALWKSY 228 >gi|148358915|ref|YP_001250122.1| DNA polymerase III subunit epsilon [Legionella pneumophila str. Corby] gi|296106963|ref|YP_003618663.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99 Alcoy] gi|148280688|gb|ABQ54776.1| DNA polymerase III, epsilon subunit [Legionella pneumophila str. Corby] gi|295648864|gb|ADG24711.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99 Alcoy] Length = 233 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 136/232 (58%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTG+ + R+IEIG +EL+D T + F ++L P R+ A ++HGI Sbjct: 1 MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQ-REVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123 + EFL+DKP F I +EF F + +E I HNA FDVGF+N+EL+ + NK D RI Sbjct: 60 STEFLQDKPLFQDIVTEFIQFV--EGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR KHP RN L++LCKRY I +R HGALLD+ +L+ VY+ M G S + Sbjct: 118 LDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSL-- 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 T + K I L KP+ + +EEL +H ++ + K + Sbjct: 176 --FTEVESSMSHSKIKTQEIKSLSLKKPVIMKANEEELIQHQSFVEFISKKS 225 >gi|291613978|ref|YP_003524135.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus ES-1] gi|291584090|gb|ADE11748.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus ES-1] Length = 233 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 87/238 (36%), Positives = 130/238 (54%), Gaps = 15/238 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD K RIIE+ A+EL + RTF ++ P R+ A +HG+ Sbjct: 1 MRQIVLDTETTGLDPKQGHRIIEVAAIELNGRKVSERTFHRYINPE-REIDEGAAAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + L+D+P F+ + +F AE I HNA FD+GF+NAEL PL + +ID Sbjct: 60 TLDRLQDEPKFAEVAPALLEFIA--GAELIIHNAPFDIGFLNAELALAGL-PLLNNPVID 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +A+ HP +N+LN+LC RY + SHR+ HGALLD+ LL++VY+ M G + Sbjct: 117 TLKVAKELHPGKKNNLNALCDRYQVDNSHRTLHGALLDTELLAEVYLGMTRGQESLLGEE 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 ++ ED +S+ +++EL H ++ + K + +W R Sbjct: 177 RSEEDGVQFTASGEAICLSV------RVLPASEDELALHRAQLEDIEKASKGSCLWKR 228 >gi|190573031|ref|YP_001970876.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia K279a] gi|190010953|emb|CAQ44562.1| putative DNA polymerase III, epsilon chain [Stenotrophomonas maltophilia K279a] Length = 243 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 91/239 (38%), Positives = 131/239 (54%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +RI+EIG VEL T + ++ P+ + A ++ G+ Sbjct: 1 MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDC-EFEQGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T EFL DKP F+ I EF F + AE I HNA FD+GF++ EL + D Sbjct: 60 TLEFLDDKPEFAQIADEFLAFID--GAELIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL++AR + P RN L++LCKR G+ SHR+ HG LLD+ +L DVYI + G +I Sbjct: 118 VIDTLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 FG ++ + LL R + + T EL+ H ++ L K A+WD Sbjct: 178 FGLGDDDGGGAGAALQAFDTSKLLPRPRVV---ATPSELEAHAARLERLRKKAGHALWD 233 >gi|56416800|ref|YP_153874.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St. Maries] gi|222475164|ref|YP_002563580.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Florida] gi|254995002|ref|ZP_05277192.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Mississippi] gi|255003148|ref|ZP_05278112.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Puerto Rico] gi|255004274|ref|ZP_05279075.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Virginia] gi|56388032|gb|AAV86619.1| DNA polymerase III epsilon chain [Anaplasma marginale str. St. Maries] gi|222419301|gb|ACM49324.1| DNA polymerase III, epsilon chain (dnaQ) [Anaplasma marginale str. Florida] Length = 232 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 138/241 (57%), Gaps = 11/241 (4%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R+IV D ETTGLD+ DRIIEIG VEL+D+ T + F ++ P R A K+HG Sbjct: 2 RTREIVLDTETTGLDAASGDRIIEIGCVELVDFVMTGQVFHKYINPE-RDIPIAATKIHG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT + +K+ P F+ + +F +F Q++ + HNA FD+ FI E++RI K L + ++ Sbjct: 61 ITTDMVKNMPKFAEMADQFLNFV--QDSVLVIHNAGFDLKFIETEMERIGKTKL-YNPVV 117 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +ARRK P L++LCKR+ I+ S R HGAL D+ LL+ VY+++ GG Q + G Sbjct: 118 DTLEVARRKFPGMPASLDALCKRFDISTSSRRFHGALKDATLLARVYVEL-CGGIQRSLG 176 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 F + + K + P I+ EL H ++I + K+ IW+ Y+ ++ Sbjct: 177 FVSGDLTQSTRASKASKPV----LQAPRAFTISDLELKLHAESISKM-KDPIWNMYLKTS 231 Query: 245 Q 245 Sbjct: 232 D 232 >gi|326317571|ref|YP_004235243.1| DNA polymerase III subunit epsilon [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374407|gb|ADX46676.1| DNA polymerase III, epsilon subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 243 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 90/238 (37%), Positives = 130/238 (54%), Gaps = 14/238 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIE+G VELL+ T ++ P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124 +EFLKDKP F+ + E ++ Q AE I HNA FDVGF+N EL+ + + Sbjct: 62 NEFLKDKPKFAEVVDEILEYL--QGAEIIIHNAAFDVGFLNKELELTGRPAFTSYVESVT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +A+ +P RN L++LC R G+ S R+ HGALLD+ LL+DVYI + G + Sbjct: 120 DTLVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIA 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 E E + + L P+ +++EL HD+ + + G IW Sbjct: 180 DDAQE---GDESAVRLAPVDLSAFTLPVLL-ASEQELAAHDEVLAQIDKASGGKTIWK 233 >gi|190571471|ref|YP_001975829.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018874|ref|ZP_03334682.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357743|emb|CAQ55194.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995825|gb|EEB56465.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 234 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 95/242 (39%), Positives = 143/242 (59%), Gaps = 11/242 (4%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 K+++R+IV D ETTGLD+K RIIEIG VEL++ T +TF +L P R + K Sbjct: 1 MKSRLREIVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPE-RDIPYHSFK 59 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI++EFL+DKP FS + EF DF + N + HNA+FDV F+N EL ++N + Sbjct: 60 IHGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELGKLNAGLISSD 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R++DTL +AR+K S LN+LCKR+ I++ R HGAL+D+ LL+ VY+++ G Sbjct: 118 RVLDTLPLARKKFVGSPASLNALCKRFDISLEGRELHGALVDAQLLAKVYVELTGGLQTF 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F + +D + V N++ + + +E+DEH K + + N +W YI Sbjct: 178 LFNNECAQDNNSTFIQHKVRNLARREHS------PSIKEIDEHKKLLDKIN-NPLWKEYI 230 Query: 242 SS 243 S Sbjct: 231 ES 232 >gi|91788057|ref|YP_549009.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666] gi|91697282|gb|ABE44111.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666] Length = 234 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 134/239 (56%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL ++N DRIIEIG VEL+ T +L P R + +ALK+HGI Sbjct: 1 MRQIVLDTETTGLSAENGDRIIEIGCVELVGRKLTGNNRHFYLNPE-RDSHEDALKVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 ++EFLKDKP F+++ E ++ Q AE I HNA FDV F+N EL+ I +DP+ ++ Sbjct: 60 SNEFLKDKPKFAAVADELLEYL--QGAEIIIHNAPFDVSFLNKELELIGRDPIRHCVAKV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L +A+ P RN L++LC R + S R+ HGALLD+ LL+DVYI + G + + Sbjct: 118 TDSLMMAKELFPGKRNSLDALCDRLDVDNSGRTLHGALLDAELLADVYINLTRGQNSL-- 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + ++ T P I L PL +E+ H+ + + K +W Sbjct: 176 ---MMDVGGPAQDGDTPPLIDLSAFALPLLL-ANDQEIAAHEVLLADIDKASKGKTVWR 230 >gi|254452968|ref|ZP_05066405.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 238] gi|198267374|gb|EDY91644.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus 238] Length = 242 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 140/248 (56%), Gaps = 22/248 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + + DRI+EIGA+EL ++ T RT+ ++ P R A +HGI Sbjct: 1 MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPK-RTMPAGAFGIHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F+ I F DF +++ + HNA FD+ F+NAEL Sbjct: 60 GPDLLEPPQTPTAGQVLLRDKPVFAEIAQAFVDFIG--DSKLVIHNAAFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +N+ L + +DTL IAR+K P S L++LC+R+GI S+R+ HGALLDS +L++VY+ Sbjct: 118 VNRPLLPMGQSLDTLGIARKKFPGSPASLDALCRRFGIDNSNRTLHGALLDSEILAEVYL 177 Query: 173 KMMVG-GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 +++ G + G +T + + P + R PL +I E D H I+ L Sbjct: 178 ELIGGRQPDLVMGDQTGSNAKNGGGAEWRPQL----RTTPLAPKIKAAEADAHAAFIKLL 233 Query: 232 GKNAIWDR 239 G NA+W++ Sbjct: 234 GDNALWNK 241 >gi|148261748|ref|YP_001235875.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5] gi|146403429|gb|ABQ31956.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5] Length = 225 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 125/232 (53%), Gaps = 13/232 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++FD ETTGL+ DR+IE+ A+EL + T + F + P R EA ++HG+T Sbjct: 3 RAVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTLIDPE-RDIPAEASRVHGMT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + KP F+ I +E +FF E +AHNA FD GF++AE RI + LD +R+IDT Sbjct: 62 SADVAGKPKFAEIAAELLEFFAED--PLVAHNAPFDFGFLDAEFARIGRAALDRARMIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LC+R+ I S R+ H ALLD LL++VY+++ GG Q Sbjct: 120 LALAKQRFPGMPNSLDALCRRFDIDFSARTTHNALLDCKLLAEVYVELT-GGRQRGLDLA 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 E + P P + EL H+ I+ L K +W Sbjct: 179 AESTIRLVEYRSEGPR-------TPRPVVASAAELAAHEAFIEKL-KEPVWR 222 >gi|83944955|ref|ZP_00957321.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii HTCC2633] gi|83851737|gb|EAP89592.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii HTCC2633] Length = 236 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 137/231 (59%), Gaps = 11/231 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+FD ETTGLD + DR+ E+G VE++D T + ++ + P R E + G T Sbjct: 4 REIIFDTETTGLDPRGGDRVTELGCVEVIDLIPTGKDLRILINPE-RDIPAEVTAVTGHT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E LKD+P F+ I +F DF +++ +AHNA FD+GFIN EL+R K + +R IDT Sbjct: 63 WEMLKDEPKFAEIVDQFLDFI--EDSTLVAHNAMFDMGFINMELERCGKPIIPKARFIDT 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +IAR K P + L++LCKR+ +++ R+KHGAL+DS+LL++VY+++ GG + + F Sbjct: 121 AAIAREKFPGAPASLDALCKRFDVSLDSRTKHGALIDSYLLAEVYLEL-NGGREQSLSFT 179 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 ++ TV + R K L + +T+ E H + I + + +W Sbjct: 180 GSDG-----GDGTVVYPTRAARPKSLPSLVTERERAAHAEFISEM-DDPLW 224 >gi|325914917|ref|ZP_08177249.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC 35937] gi|325538810|gb|EGD10474.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC 35937] Length = 244 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T EFL DKP F + EF + + AE I HNA FD+GF++ EL + +D + Sbjct: 60 TLEFLADKPLFGDVVEEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDGYGRIIDRAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ +HR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + E + L +P +T E H+ + L K A+WD Sbjct: 178 FA-SADAGQNSNESSGMIAFDPALLLPRPRVV-VTASESQAHEARLAQLRKKAGRALWD 234 >gi|117923346|ref|YP_863963.1| DNA polymerase III subunit epsilon [Magnetococcus sp. MC-1] gi|117607102|gb|ABK42557.1| DNA polymerase III, epsilon subunit [Magnetococcus sp. MC-1] Length = 237 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 140/239 (58%), Gaps = 12/239 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTG D K RIIEIG VEL++ K + Q ++ P R+ +A K+HGIT Sbjct: 3 RLIVLDTETTGFDPKEGHRIIEIGCVELVNMRKGDER-QWYVNPE-REIPADATKVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125 D + + P F I+ EF F E + + HNA+FD+ F+NAEL R+NK + P R ID Sbjct: 61 DADVANSPKFKEIYHEFLAFIGEDS--LVIHNAEFDMRFLNAELTRLNKRLVMPMERAID 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +ARRK P S +L++LCKR G+ S R+ HGALLD+HLL++VY+++M GG+Q + Sbjct: 119 TIPLARRKFPGSTVNLDALCKRLGVDNSGRTFHGALLDAHLLAEVYVELM-GGNQFSLEM 177 Query: 186 KTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQTLGKN---AIWDR 239 +E + + + + P ++++E H+ +Q L + A+W++ Sbjct: 178 AADESGRIAQPSDSPKDGAPGPGLMMAPRDWQVSEESTQAHEAFLQLLDRESGGAVWNK 236 >gi|312115401|ref|YP_004012997.1| DNA polymerase III subunit epsilon [Rhodomicrobium vannielii ATCC 17100] gi|311220530|gb|ADP71898.1| DNA polymerase III, epsilon subunit [Rhodomicrobium vannielii ATCC 17100] Length = 241 Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 103/236 (43%), Positives = 136/236 (57%), Gaps = 10/236 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTGLD K RIIE+ VEL +Y T + + P R EA +HG+ Sbjct: 1 MRELVLDTETTGLDPKSGHRIIELACVELHNYIPTGVFWHWYFNPE-RSVPREATAIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRII 124 TD FL DKP F +I + + A I HNA FDVGF+N E Q++ P+ R+ Sbjct: 60 TDGFLADKPLFGAIAPDIVKVL--EGARLIIHNASFDVGFLNFEFQKLGYQQPISMERVT 117 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++ARRKHP S N+L++LC+RYGI S R+KHGALLDS LL+DVY++++ G Q Sbjct: 118 DTLALARRKHPGSPNNLDALCRRYGIDNSTRTKHGALLDSELLADVYLRLI-GAEQAGLD 176 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E ++ R KPL +R+T EE H + TLG AIW RY Sbjct: 177 LGARS----AEVTVAGQAAAVQVRLKPLPSRLTAEEAAAHAAFVATLGDKAIWKRY 228 >gi|238762660|ref|ZP_04623629.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC 33638] gi|238698965|gb|EEP91713.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC 33638] Length = 259 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 134/252 (53%), Gaps = 11/252 (4%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ R+IV D ETTG++ + +IIEIGAVE+++ T R F V++ P+ R Sbjct: 6 MQVTPTRQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVD 64 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 PEA +HGI+DEFL DKP+F+ I SEF +F + AE + HNA FD+GF++ E + + +D Sbjct: 65 PEAYGVHGISDEFLADKPTFADIASEFLEFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 122 Query: 117 PLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I D+L +ARR P RN+L++LC RY I + R+ HGALLD+ +L++VY+ Sbjct: 123 IPKTETFCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLA 182 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G + ++F + ++ + E + + G Sbjct: 183 MTGGQTSLSFSMEGDQSQNNSSEDIQRITRPASGLKIIYAAEEEIAAHESRLDLVMKKGG 242 Query: 234 NAIWDRYISSNQ 245 + +W + + Sbjct: 243 SCLWRMPLETED 254 >gi|253999157|ref|YP_003051220.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4] gi|253985836|gb|ACT50693.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4] Length = 234 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 93/236 (39%), Positives = 138/236 (58%), Gaps = 14/236 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL + RIIEI AVE+++ T++ + V+L P+ R+ A ++HGI Sbjct: 1 MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPD-REIDAGAQEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL+DKP F+ + EF DF Q++E I HNA FDVGF+NAEL RI K ++ S I Sbjct: 60 TLEFLQDKPRFADVVGEFLDFV--QDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +A+ P RN+L++LC+ +GI S R+ HGALLD+ LL+DVY+ M G Q + Sbjct: 118 IDTLKMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLDAELLADVYLAMTRG--QESL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKNAIW 237 + ++ + ++ ++ + E H + +Q L G +W Sbjct: 176 IIDMLDTPVHNDDNDALQIQAISQK----VVLADETETAAHQQYLQGLAKGGACVW 227 >gi|120611120|ref|YP_970798.1| DNA polymerase III subunit epsilon [Acidovorax citrulli AAC00-1] gi|120589584|gb|ABM33024.1| DNA polymerase III, epsilon subunit [Acidovorax citrulli AAC00-1] Length = 243 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 90/238 (37%), Positives = 130/238 (54%), Gaps = 14/238 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIE+G VELL+ T ++ P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124 +EFLKDKP F+ + E ++ Q AE I HNA FDVGF+N EL+ + + Sbjct: 62 NEFLKDKPKFAEVVDEILEYL--QGAEIIIHNAAFDVGFLNKELELTGRPAFTSYVESVT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +A+ +P RN L++LC R G+ S R+ HGALLD+ LL+DVYI + G + Sbjct: 120 DTLVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIA 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 E E + + L P+ +++EL HD+ + + G IW Sbjct: 180 DDAQE---GDETAVRLAPVDLSAFTLPVLL-ASEQELAAHDEVLAQIDKASGGKTIWK 233 >gi|225677154|ref|ZP_03788153.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590821|gb|EEH12049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 231 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 93/238 (39%), Positives = 140/238 (58%), Gaps = 11/238 (4%) Query: 3 RKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++K+R+IV D ETTGLD RIIEIG VEL++ T + F +L P R + K Sbjct: 1 MESKLREIVLDTETTGLDTGSGHRIIEIGCVELINRIPTGKVFHRYLNPE-RDIPYHSFK 59 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI++EFL+DKP FS + EF DF + N + HNA+FDV F+N EL ++N + Sbjct: 60 IHGISEEFLEDKPLFSDVALEFLDFIS--NDILVIHNAEFDVKFLNMELSKLNAGLISSD 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R++DTL +AR+K S LN+LCKR+ I++ +R HGAL+D+ LL+ VY+++ G Sbjct: 118 RVLDTLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTF 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 F + N+D + V N++ P EE+DEH K + + N +W++ Sbjct: 178 LFDNECNQDSNSTFVQHKVRNLT------PREHSPNSEEIDEHKKLLDKIN-NTLWNK 228 >gi|300703774|ref|YP_003745376.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum CFBP2957] gi|299071437|emb|CBJ42756.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum CFBP2957] Length = 242 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 87/240 (36%), Positives = 130/240 (54%), Gaps = 15/240 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R ++ P R+ A+ +HGI Sbjct: 1 MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T+EF+ DKP F+ + +E D+ Q AE I HNA FD+GF++ E +R+ Sbjct: 60 TNEFVADKPKFAEVVAEIRDYV--QGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGH 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL ARR P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 118 IDTLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWDR 239 + E + L + P+ T+ E H ++ + G +W R Sbjct: 178 DMLEGGETAATEAA----AVDLSGLELPILL-ATEVEATAHATVLKEIDKASGGKTVWSR 232 >gi|289664175|ref|ZP_06485756.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668767|ref|ZP_06489842.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 244 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 132/239 (55%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T EFL DKP F + EF + + AE I HNA FD+GF++ EL + ++ + Sbjct: 60 TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDNYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + + L +P +T E H+ + L K A+WD Sbjct: 178 FA-SADAGQQTNSASGMIAFDPALLLPRPRVA-VTASESQAHEARLAQLRKKAGRALWD 234 >gi|241663345|ref|YP_002981705.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D] gi|240865372|gb|ACS63033.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12D] Length = 242 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 91/237 (38%), Positives = 128/237 (54%), Gaps = 9/237 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL++ DR+IEIG VE+++ T R ++ P R+ A+ +HGI Sbjct: 1 MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T+EF+ DKP F+ I +E D+ Q AE I HNA FD+GF++ E QR+ P Sbjct: 60 TNEFVADKPKFAEIVNEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGH 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL AR+ P RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M G Q Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRG--QNTL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-GKNAIWDR 239 E + ++S L+ L T E K I G +W R Sbjct: 176 VIDMLESGEGASAEAVAVDLSALQLPVLLATEAEAEAHAGVLKEIDKASGGKTVWTR 232 >gi|114328806|ref|YP_745963.1| DNA polymerase III subunit epsilon [Granulibacter bethesdensis CGDNIH1] gi|114316980|gb|ABI63040.1| DNA polymerase III, epsilon chain [Granulibacter bethesdensis CGDNIH1] Length = 225 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 122/232 (52%), Gaps = 12/232 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++FD ETTG D DRI+EI A+EL + T TF + P R EA ++HG T Sbjct: 3 RSVLFDTETTGFDPLTGDRILEIAALELFNDLPTGNTFHTLVDP-CRDVPEEATRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L+ KP F+ I + FF IAHNA FD F+NAE R+ K LDP+R+IDT Sbjct: 62 AEMLRGKPLFADIVEDLLAFFGRD--PLIAHNAPFDFNFLNAEFARLGKPKLDPARMIDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +A+ + P N L++LC+R+ I +S R+ H ALLD LL++VYI++ GG Q G Sbjct: 120 LVMAKARFPGMPNSLDALCRRFSIDLSQRTTHNALLDCKLLAEVYIELT-GGRQRGLGLT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 E E + + P + L H+ I L K+ +W Sbjct: 179 EAERAAAVAEYEHSAS------RVPRPIMPDEATLAAHEAFIDRL-KDPVWR 223 >gi|329296922|ref|ZP_08254258.1| DNA polymerase III subunit epsilon [Plautia stali symbiont] Length = 237 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 87/244 (35%), Positives = 132/244 (54%), Gaps = 15/244 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M N R+IV D ETTG++ + RIIEIGAVE+++ T F ++L P+ R Sbjct: 1 MSTANN-RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPD-RLV 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFI---NAELQR 112 PEA +HGI DEFL DKP+F+ I EF D+ + AE + HNA FD+GF+ A LQR Sbjct: 59 DPEAFGVHGIADEFLADKPTFAQIADEFLDYI--RGAELVIHNASFDIGFMDYEFAMLQR 116 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +I D+L++A + P RN L++LC R+ I S R+ HGALLD+ +L++V++ Sbjct: 117 DIGKTETFCQITDSLAMASKMFPGKRNSLDALCNRFEIDNSKRTLHGALLDAGILAEVFL 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M G Q + F ++ + E + + I + + EE+ H+ + + Sbjct: 177 TMT--GCQTSLAFSMEGEQSNQVEGEHIQRI-VRPGAGLRVVSASDEEIVAHESRLDLVQ 233 Query: 233 KNAI 236 K Sbjct: 234 KKGR 237 >gi|197335831|ref|YP_002156764.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11] gi|197317321|gb|ACH66768.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11] Length = 223 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 87/220 (39%), Positives = 130/220 (59%), Gaps = 10/220 (4%) Query: 22 KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFS 81 + RI+EIGAVE+++ T F V++ P+ R EA+ +HGITDEFL DKP + I Sbjct: 10 EGHRIVEIGAVEIINRKLTGNHFHVYIKPD-RLIDLEAIDVHGITDEFLYDKPEYKDIHD 68 Query: 82 EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---DPLDPSRIIDTLSIARRKHPSSR 138 EF +F + AE +AHNA FDVGF++ E ++NK +I DTL++A++ P R Sbjct: 69 EFLEFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIGTTDQYCKITDTLAMAKKIFPGKR 126 Query: 139 NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198 N+L+ LC+RYGI SHR+ HGALLD+ +L+DVY+ M G + ++F N +E K Sbjct: 127 NNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLSFSSGDNSSDSDEETIK 186 Query: 199 TVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + + R R T +EL+ H+K + +G +W Sbjct: 187 RLNS----GRKGLKVLRATADELEAHEKRLDIVGDACLWR 222 >gi|16124261|ref|NP_418825.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15] gi|221232944|ref|YP_002515380.1| DNA polymerase III subunit epsilon [Caulobacter crescentus NA1000] gi|13421091|gb|AAK21993.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15] gi|220962116|gb|ACL93472.1| DNA polymerase III, epsilon chain [Caulobacter crescentus NA1000] Length = 237 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 131/235 (55%), Gaps = 9/235 (3%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTG D K DR++EIG +E++D+ T R+F + P R EA K+HG++ Sbjct: 3 REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDP-LRDMPAEAEKVHGLS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 FL KP F I F DF ++ +AHNA FD F+N EL++ K P+ R +DT Sbjct: 62 SAFLTGKPKFHEIADRFLDFVG--DSVVVAHNAAFDRQFVNFELEKCGKAPIHEERWVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L++A+++ P N L++LCKR+ I++ R KHGAL+D+HLL++VY+++ GG + Sbjct: 120 LAMAKKRFPGMYNSLDALCKRFKISLESRDKHGALIDAHLLAEVYLEL-QGGKERALELT 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT-LGKNAIWDRY 240 T R +PL R T E + H ++ L A+W ++ Sbjct: 179 ---HSTGAMAVSTAIQGVYAARSRPLAPRSTDAEREIHAAWVRKNLKDKALWIQF 230 >gi|325920993|ref|ZP_08182879.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC 19865] gi|325548527|gb|EGD19495.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC 19865] Length = 244 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 135/239 (56%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T EFL DKP F+ + EF + + AE I HNA FD+GF++ EL + ++ + Sbjct: 60 TLEFLADKPLFADVVEEFLAYID--GAELIIHNAAFDLGFLDNELSLLGDNYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + ++ + L +P +T E H+ + L K A+WD Sbjct: 178 FA-SADAGQSTQDADGMISFDPALLLPRPRVA-VTASESQAHEARLAQLRKKAGRALWD 234 >gi|309782421|ref|ZP_07677145.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA] gi|308918758|gb|EFP64431.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA] Length = 242 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 91/237 (38%), Positives = 128/237 (54%), Gaps = 9/237 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL++ DR+IEIG VE+++ T R ++ P R+ A+ +HGI Sbjct: 1 MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T+EF+ DKP F+ I +E D+ Q AE I HNA FD+GF++ E QR+ P Sbjct: 60 TNEFVADKPKFAEIVNEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGH 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL AR+ P RN L++LC R GI+ +HR+ HGALLD+ LL++VY+ M G Q Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRG--QNTL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-GKNAIWDR 239 E + ++S L+ L T E K I G +W R Sbjct: 176 VIDMLESGEGASAEAVAVDLSALQLPVLLATEAEAEAHAGVLKEIDKASGGKTVWTR 232 >gi|121605184|ref|YP_982513.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans CJ2] gi|120594153|gb|ABM37592.1| DNA polymerase III, epsilon subunit [Polaromonas naphthalenivorans CJ2] Length = 240 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 98/239 (41%), Positives = 140/239 (58%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL ++N DRIIEIG VEL+ T +L P GR + +ALK+HGI Sbjct: 1 MRQIVLDTETTGLSAENGDRIIEIGCVELVRRKLTGNNKHFYLNP-GRNSHEDALKVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 ++EFLKDKP FS++ E D+ Q AE I HNA FDV F+N EL+ I ++PL ++ Sbjct: 60 SNEFLKDKPKFSAVVDELLDYL--QGAEIIIHNAPFDVSFLNKELEIIGREPLMHCVAKV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L +A+ P RN LN+LC R + S R+ HGALLD+ LL+DVYI + G + + Sbjct: 118 TDSLMMAKEMFPGKRNSLNALCDRLEVDNSGRTLHGALLDAELLADVYINLTRGQNSLMM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 + E P + L + P+ + +++E+D H+K + TL K +W Sbjct: 178 DIGSPVQTGESE-----PLVDLRLFELPVLS-ASEQEMDAHEKVLLTLDKASRGKTVWR 230 >gi|157826195|ref|YP_001493915.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford] gi|157800153|gb|ABV75407.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford] Length = 229 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 84/236 (35%), Positives = 136/236 (57%), Gaps = 11/236 (4%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +R+I+ D ETTGLD + RI+EI A+E+++ T R F ++ P R +A ++ Sbjct: 1 MSSLREIILDTETTGLDPRQGHRIVEIAAIEMMNKVLTGRNFHFYINPE-RDIPFDAYRI 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI+ EFLKDKP F +I +F +F +++ + HNA FD+ F+N EL +R L+ Sbjct: 60 HGISGEFLKDKPLFHTIADDFLEFIA--DSKLVIHNAPFDIKFLNHELSLLKRAEIKLLE 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 S IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++ GG Sbjct: 118 LSNAIDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELT-GGR 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 Q +F D+ + ++ + + TKEEL +H + + ++ K A Sbjct: 177 QSSFKMV---DKSAGINNLAINQVNSKTEQASIVIKPTKEELQKHKEFLSSILKTA 229 >gi|123441273|ref|YP_001005260.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088234|emb|CAL11023.1| DNA polymerase III, epsilon chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 238 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 133/234 (56%), Gaps = 12/234 (5%) Query: 18 GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77 G+ + +IIEIGAVE+++ T R F V++ P+ R PEA +HGI+DEFL DKP+F+ Sbjct: 5 GVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPD-RLVDPEAYGVHGISDEFLADKPTFA 63 Query: 78 SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SRIIDTLSIARRKH 134 I EF +F + AE I HNA FD+GF++ E + + +D I D+L +ARR Sbjct: 64 DITPEFLEFI--RGAELIIHNAAFDIGFMDYEFRMLQQDIPKTETFCTITDSLLLARRLF 121 Query: 135 PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194 P RN+L++LC RY I + R+ HGALLD+ +L++VY+ M G + ++F + D+ Sbjct: 122 PGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLSFSME--GDQTQN 179 Query: 195 EEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL---GKNAIWDRYISSNQ 245 E + + I+ T++E+ H+ + + G + +W + ++ Sbjct: 180 ESSEDIQRITR-PASGLKIIYATEDEIAAHESRLDLVMKKGGSCLWRMPLETDD 232 >gi|308049181|ref|YP_003912747.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799] gi|307631371|gb|ADN75673.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799] Length = 240 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 94/252 (37%), Positives = 142/252 (56%), Gaps = 24/252 (9%) Query: 1 MIRKNKMRKIVFDIETTGLDSK------NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M + +R+IVFD ETTG++ ++IEIG VEL++ T RT+ V++ P+ R Sbjct: 1 MTQAADLRQIVFDTETTGMNQGAGPHYLGHKLIEIGCVELINRKPTGRTYHVYIQPD-RP 59 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 EA+++HGITDEFL KP F I EF++F + AE IAHNA FD+GFI+ E + + Sbjct: 60 VDEEAIQVHGITDEFLVGKPRFGEIAEEFFEFI--RGAELIAHNANFDIGFIDYEFEMLG 117 Query: 115 K--DPLDPSRIIDTLSIARRK----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 + D ++DTL +AR K +L++LC+ YGI SHR+ HGALLD+ +L+ Sbjct: 118 RFGKLEDHCSLVDTLQLAREKKNRGEIQGNLNLDALCRFYGIDNSHRTLHGALLDAEILA 177 Query: 169 DVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 DV++ M G ++NFG + + R + T +ELD H K + Sbjct: 178 DVFLYMTGGQVKMNFGSGDGDAGGIIRLPED--------RRRTKVVLATADELDNHTKRM 229 Query: 229 QTLGKNAIWDRY 240 + + +AIW R+ Sbjct: 230 ELVS-DAIWLRH 240 >gi|240950342|ref|ZP_04754612.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305] gi|240295153|gb|EER45972.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305] Length = 253 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 90/249 (36%), Positives = 141/249 (56%), Gaps = 17/249 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M+ + R++V D ETTG++ IIEIGAVE+++ T RTF V++ P R+ Sbjct: 1 MLEQEIHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPP-REV 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 EA+K+HGIT+EFL+DKP+F+ I EF F + AE + HNA FDVGF++ E + Sbjct: 60 EEEAIKVHGITNEFLQDKPTFAEIVDEFVAFI--KGAELVIHNAPFDVGFMDHEFSFLAN 117 Query: 116 DPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P + + D+L++AR+ +P RN+L++LC R GI S R HGALLD+ +L+DV++ Sbjct: 118 PPPKTAEMCTVTDSLALARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD----KTI 228 MM GG + +++ + + P I+ + + + + EL+ H Sbjct: 178 -MMTGGQIALLAEEEHDENPQVDLLEEGPKIAFDTSN-SVILKADESELEAHQLFLKLLY 235 Query: 229 QTLGKNAIW 237 + KN IW Sbjct: 236 KKSKKNCIW 244 >gi|121997071|ref|YP_001001858.1| DNA polymerase III subunit epsilon [Halorhodospira halophila SL1] gi|121588476|gb|ABM61056.1| DNA polymerase III, epsilon subunit [Halorhodospira halophila SL1] Length = 243 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 131/240 (54%), Gaps = 16/240 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTG+D + RIIEIG VEL+ T F +L P+ R A +HG+ Sbjct: 1 MRQILLDTETTGMDPTEGHRIIEIGCVELVRRRLTGNNFHEYLNPD-RAVDEGAENVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 ++ FL DKP F+ I F D+ Q+AE I HNA FDVGFI+AEL R+ D Sbjct: 60 SNRFLADKPRFADIARRFVDYV--QDAELIIHNAPFDVGFIDAELARLGPAWGQLEDYCT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I D+L +ARR HP R L++LCKRY + S R HGALLDS LL++VY+ M G +++ Sbjct: 118 ITDSLQMARRMHPGQRCSLDALCKRYSVDGSRRELHGALLDSELLAEVYLAMTGGQGKLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 + E + ++ +R + + E + H++ +Q + G A+W Sbjct: 178 LEGEGLEPGGAEPVQRLS-----AERPRLRVPEPGELEREAHEQLLQRIEATCGGPALWR 232 >gi|145589210|ref|YP_001155807.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047616|gb|ABP34243.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 236 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 81/238 (34%), Positives = 130/238 (54%), Gaps = 16/238 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+ DR+IEIG VE++D T+RTF ++ P R A +HG+ Sbjct: 1 MRQVILDTETTGLNPATGDRVIEIGCVEVIDRRLTDRTFHYYINPE-RDIDAGAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 + EFL DKP F +I + +F + AE + HNA FD+GF++ E + + P S++ Sbjct: 60 SREFLSDKPVFGNIAEQLIEFVD--GAEIVIHNAAFDLGFLDNEFALLKRPPFRGLASKV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL AR+ P RN L++LC+R+ I+ HR+ HGALLD+ LL++VYI M G ++ Sbjct: 118 IDTLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYIAMTRGQEDLS- 176 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG----KNAIW 237 + + + + R + ++ H+K + + K+ +W Sbjct: 177 -IDLIDYTVGADSSGHMKELPTDLR----VLAASDDDCQLHEKILAEIAKASKKDPVW 229 >gi|78046646|ref|YP_362821.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925275|ref|ZP_08186679.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118] gi|78035076|emb|CAJ22721.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544321|gb|EGD15700.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118] Length = 244 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T EFL DKP F + EF + + AE I HNA FD+GF++ EL + ++ + Sbjct: 60 TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + + L +P +T EL H+ + L K A+WD Sbjct: 178 FA-SADAGQQTDAASGVIAFDPALLLPRPRIA-VTASELQAHEARLAQLRKKAGRALWD 234 >gi|221066578|ref|ZP_03542683.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1] gi|220711601|gb|EED66969.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1] Length = 243 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 130/231 (56%), Gaps = 9/231 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL + DR+IE+G VEL++ T ++ GR + P+AL++HGIT Sbjct: 3 RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFN-AGRDSHPDALRVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124 EFLKDKP F E W++ Q AE I HNA FD+GF+N EL+ + PL +I Sbjct: 62 TEFLKDKPRFEEKIDEIWEYL--QGAELIIHNAPFDLGFLNNELKLAKRPPLKQCVGGVI 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +A+ +P RN L+SLC R G+ S+R+ HGALLD+ LL+DVYI + G + Sbjct: 120 DTLVMAKEMYPGKRNSLDSLCDRLGVDNSNRTLHGALLDAELLADVYINLTRGQDALLMS 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + + ++S + R ++E HD ++ + K++ Sbjct: 180 EEPADAPAAGTMIVASVDLSSFRLP---VLRANEQEQAAHDDVLKQMDKSS 227 >gi|332525346|ref|ZP_08401511.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] gi|332108620|gb|EGJ09844.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] Length = 234 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 94/240 (39%), Positives = 139/240 (57%), Gaps = 16/240 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL + DR++E+G +E+L+ + RT +L P R ++PEA+K+HG+ Sbjct: 1 MRQIFLDTETTGLSAVDGDRLVEVGCIEMLNRRLSGRTLHHYLNPE-RSSNPEAVKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 TDEFL DKP F+++ EF +F ++AE I HNA FDVGF++AEL R+ K L I Sbjct: 60 TDEFLADKPLFAAVADEFIEFV--RDAELIIHNAAFDVGFLDAELTRLGKPRLVELGCTI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L +AR+ P N L++LCKR + S+R+ HGALLD+ LL++VYI+M G + Sbjct: 118 TDSLVMARQLFPGKANSLDALCKRLEVDNSNRALHGALLDAGLLAEVYIRMTRGQDSL-- 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239 +D V I L + P+ + EE H+ + L K + IW + Sbjct: 176 ---VIDDAQEGGTALEVAAIDLSQFTLPVLV-ASDEEAAAHEAVLAELDKASNGRTIWRQ 231 >gi|264678862|ref|YP_003278769.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2] gi|299532427|ref|ZP_07045819.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44] gi|262209375|gb|ACY33473.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2] gi|298719665|gb|EFI60630.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44] Length = 243 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 91/231 (39%), Positives = 131/231 (56%), Gaps = 9/231 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL + DR+IE+G VEL++ T ++ GR + P+AL++HGIT Sbjct: 3 RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFN-AGRDSHPDALRVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124 EFLKDKP F E W++ Q AE I HNA FD+GF+N EL+ + PL ++ Sbjct: 62 TEFLKDKPRFEEKIDEIWEYL--QGAELIIHNAPFDLGFLNNELKLAKRPPLKQCVGGVL 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +A+ +P RN L+SLC R G+ S+R+ HGALLD+ LL+DVYI + G Q Sbjct: 120 DTLVMAKEMYPGKRNSLDSLCDRLGVDNSNRTLHGALLDAELLADVYINLTRG--QDALL 177 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 VP++ L P+ R ++E HD ++ + K++ Sbjct: 178 MTEEPADAPAAGAIVVPSVDLSSFKLPVL-RANEQEQQSHDDVLKQMDKSS 227 >gi|113460748|ref|YP_718815.1| DNA polymerase III subunit epsilon [Haemophilus somnus 129PT] gi|170719139|ref|YP_001784286.1| DNA polymerase III subunit epsilon [Haemophilus somnus 2336] gi|112822791|gb|ABI24880.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT] gi|168827268|gb|ACA32639.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 2336] Length = 252 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 136/246 (55%), Gaps = 18/246 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+I+ D ETTG++ + IIEIGAVE+++ T R +++ P+ R PEA+K+ Sbjct: 9 RQIILDTETTGMNEFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPD-RLVDPEAIKV 67 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDP 120 HGITDE L DKP FS+I EF DF + AE I HNA FD+GF++ E ++ N + D Sbjct: 68 HGITDEMLADKPDFSAIAQEFIDFI--KGAELIIHNAPFDIGFMDYEFKKHNFNINTADI 125 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I DTL +AR+ +P RN L++LC R I S R+ HGALLD+ +L DVY+ M G + Sbjct: 126 CLITDTLQMARQMYPGKRNSLDALCDRLNIDNSKRTLHGALLDAEILGDVYLAMTGGQTS 185 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG----KNAI 236 + FG + + EE + L T+EE H ++ L +N + Sbjct: 186 L-FGDEEHTPIITLEENIHQHTTNTHNFKLLLP---TEEEKLAHQDYLKLLNQKSKENCL 241 Query: 237 WDRYIS 242 W + + Sbjct: 242 WFKRNT 247 >gi|307248305|ref|ZP_07530330.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307263945|ref|ZP_07545548.1| hypothetical protein appser13_13530 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306855175|gb|EFM87353.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306870707|gb|EFN02448.1| hypothetical protein appser13_13530 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 239 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 11/224 (4%) Query: 23 NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82 IIEIGAVE+++ T RTF V++ P R+ EA+K+HGIT+EFL+DKP F+ + E Sbjct: 10 GHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVDEEAIKVHGITNEFLQDKPVFAEVADE 68 Query: 83 FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSRIIDTLSIARRKHPSSRN 139 F +F + AE I HNA FDV F++ E + P + + D+L++AR+ +P RN Sbjct: 69 FIEFI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRN 126 Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199 +L++LC R GI S R HGALLD+ +L+DV++ MM GG G + Sbjct: 127 NLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLALLGEEDATATHENVADLG 185 Query: 200 VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 + I+ + + +++EE H++ ++ + K N IW R Sbjct: 186 LGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWMR 229 >gi|313201259|ref|YP_004039917.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688] gi|312440575|gb|ADQ84681.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688] Length = 234 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 92/236 (38%), Positives = 136/236 (57%), Gaps = 14/236 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL + RIIEI AVE+++ T++ + V+L P+ R+ A ++HGI Sbjct: 1 MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPD-REIDAGAQEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 T EFL+DKP F+ + EF DF Q++E I HNA FDVGF+NAEL RI K ++ S I Sbjct: 60 TLEFLQDKPRFADVVGEFLDFV--QDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +A+ P RN+L++LC+ +GI S R+ HGALLD+ LL+DVY+ M G + Sbjct: 118 IDTLKMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLDAELLADVYLAMTRGQESLI- 176 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL--GKNAIW 237 + ++ + ++ + + E H + +Q L G +W Sbjct: 177 -IDMLDTPVHNDDNDALQIQAISHK----VVLADETETAAHQQYLQGLAKGGACVW 227 >gi|330994285|ref|ZP_08318213.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1] gi|329758752|gb|EGG75268.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1] Length = 226 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 128/234 (54%), Gaps = 14/234 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTGLD K DR+IEI A+EL+ T R F V + P R EA ++HG T Sbjct: 3 RTILFDTETTGLDPLKGDRVIEIAALELVGDLPTGRNFHVLIDPE-RDVPEEASRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ KP F+ + S F +F + IAHNA+FD GF+NAEL R + LD R++DT Sbjct: 62 RADLEGKPKFAEVASGFLEFVGDD--PLIAHNARFDFGFLNAELARAGQPVLDMGRMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +AR + P N L++LC+R+ I +S R+ H ALLD LL+ VY+++ GG Q Sbjct: 120 LDMARERFPGMPNSLDALCRRFSIDLSERTTHNALLDCRLLAAVYLELT-GGRQRGLSLA 178 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE--ELDEHDKTIQTLGKNAIWD 238 ++ + ++ R+T + E+ H+ + L + +W+ Sbjct: 179 V------EDGGGGIATYDYVRPAGHAVVRVTPDAAEIAAHETFVARLS-SPLWN 225 >gi|94496604|ref|ZP_01303180.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58] gi|94423964|gb|EAT08989.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58] Length = 230 Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 133/232 (57%), Gaps = 7/232 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+FD ETTG D DR++EIG +EL++ T RTF + P R A +HG+ Sbjct: 1 MREIIFDTETTGFDPASGDRMVEIGCIELVNRVPTGRTFHAYYHPE-RDMPAAAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +FL P FS E DF +++ +AHNA+FD GF+N EL + R+ID Sbjct: 60 SADFLAKHPVFSLGALELLDFL--EDSPLVAHNARFDFGFLNHELTLCGHPQVGMHRMID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T++IAR+ HP +++ L++LC RYGI SHR KHGALLD+ LL+ +YI++ GG QI G Sbjct: 118 TVAIARQLHPGAKHSLDALCTRYGIDRSHRVKHGALLDAELLAQLYIELT-GGRQIGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E + + T + R +F + +EL+ H + TL + +W Sbjct: 177 AQEEAKEIVRVELTESPVVRPVRPARVFM-ASAQELERHAAFVATLDR-PLW 226 >gi|307252915|ref|ZP_07534803.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859553|gb|EFM91578.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 239 Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 11/224 (4%) Query: 23 NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82 IIEIGAVE+++ T RTF V++ P R+ EA+K+HGIT+EFL+DKP F+ + E Sbjct: 10 GHNIIEIGAVEVINRRLTGRTFHVYIKPP-REVEEEAIKVHGITNEFLQDKPVFAEVADE 68 Query: 83 FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSRIIDTLSIARRKHPSSRN 139 F +F + AE I HNA FDV F++ E + P + + D+L++AR+ +P RN Sbjct: 69 FIEFI--KGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRN 126 Query: 140 DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199 +L++LC R GI S R HGALLD+ +L+DV++ MM GG G + Sbjct: 127 NLDALCDRLGIDNSKRVLHGALLDAEILADVFL-MMTGGQLALLGEEDATATHENVADLG 185 Query: 200 VPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 + I+ + + +++EE H++ ++ + K N IW R Sbjct: 186 LGTITKFETSGLIVLSLSEEEQTAHEEYLKLIDKKSKGNCIWMR 229 >gi|224824456|ref|ZP_03697563.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224602949|gb|EEG09125.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 242 Score = 217 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 85/239 (35%), Positives = 129/239 (53%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + RIIE +E+++ T R+ +++ P R P+A ++HGI Sbjct: 1 MRQIILDTETTGLEPSQGHRIIEFAGLEMVNRKLTGRSLHLYIHPE-RDIDPDAERVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 + +FL DKP F+++ E DF ++AE I HNA FDVGF+NAE RI + + + + Sbjct: 60 SLDFLADKPRFAAVGPEIADFL--RDAELIIHNAPFDVGFLNAEFDRIGIERVSTLCASV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL +AR + P RN L++LC R+ I S+R+ HGAL+D LL +VY+ M G + + Sbjct: 118 IDTLVMARDQFPGKRNSLDALCDRFEIDRSNRTLHGALIDCELLGEVYLWMTRGQNSLVM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWD 238 D + + +R R EEL H + L K +W Sbjct: 178 DIDL--DVGGGADLGAL----EFERKPIKILRPNAEELAAHATYLDDLDKAVKGTCLWR 230 >gi|149185255|ref|ZP_01863572.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21] gi|148831366|gb|EDL49800.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21] Length = 229 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 93/233 (39%), Positives = 130/233 (55%), Gaps = 7/233 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGLD + DR++EIG VE++ T TF + P R A +HG+ Sbjct: 1 MREIVFDTETTGLDPRTGDRMVEIGCVEMVSLVPTGNTFHAYYNPE-RDMPAGAEAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + FL DKP F E DF +A IAHNA FD GF+NAEL ++ + SR+ID Sbjct: 60 SAAFLSDKPLFRDTAHELLDFIG--DAPLIAHNAGFDFGFLNAELALCEREAVCMSRMID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+++A+++HP ++ L++LC RYGI SHR KHGALLD+ LL+ VY+++ GG QI Sbjct: 118 TVALAKKRHPGAKLSLDALCTRYGIDRSHRVKHGALLDAELLAQVYVEL-KGGRQIGLEL 176 Query: 186 KTNEDRF-FKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 E V R + T EEL H + + + +N +W Sbjct: 177 AAETAAVEITTEVVAVRKAPDGPRREARPHAPTPEELARHREFMAGI-ENPLW 228 >gi|289207686|ref|YP_003459752.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. K90mix] gi|288943317|gb|ADC71016.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. K90mix] Length = 238 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 92/243 (37%), Positives = 134/243 (55%), Gaps = 20/243 (8%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + R+IEIG +EL + T R +L P+ R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEPSEGHRVIEIGCLELDNRRPTGRKLHEYLQPD-REIDAGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-----DPLDP 120 T+EFL DKP F+ + EF +F + AE I HNA FDVGFIN EL+ + + + ++ Sbjct: 60 TNEFLADKPRFADVVGEFIEFV--RGAELIIHNAPFDVGFINHELRLLGEAAPVTELVEV 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++D+L +ARR HP +RN L++LCKRY I S R+ HGALLD+ LL+DVY+ M G Sbjct: 118 CTVLDSLVMARRMHPGTRNSLDALCKRYEIDASGRTLHGALLDAELLADVYLAMTGGQVA 177 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKN----A 235 + D + + KPL +E H+ ++TL + Sbjct: 178 LGL------DAGGDAGAEAGAPARAQRSGKPLPVIEPDADEQAAHEALLRTLDEAAGGVC 231 Query: 236 IWD 238 W Sbjct: 232 RWR 234 >gi|17546591|ref|NP_519993.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum GMI1000] gi|17428890|emb|CAD15574.1| probable dna polymerase III (epsilon chain) protein [Ralstonia solanacearum GMI1000] Length = 242 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 81/193 (41%), Positives = 115/193 (59%), Gaps = 6/193 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R +L P R+ A+ +HGI Sbjct: 1 MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYLNPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T+EF+ DKP F+ + E D+ Q AE I HNA FD+GF++ E +R+ P Sbjct: 60 TNEFVADKPKFAEVVDEIRDYV--QGAEAIIHNAAFDLGFLDMEFKRLGLPPFREHLAGH 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL ARR P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 118 IDTLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVI 177 Query: 184 GFKTNEDRFFKEE 196 + + E Sbjct: 178 DMLESGETAAAEA 190 >gi|254499192|ref|ZP_05111872.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12] gi|254351582|gb|EET10437.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12] Length = 232 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 96/232 (41%), Positives = 133/232 (57%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG+ + R+IEIG VEL+D T R F V+L P R A ++HGI Sbjct: 1 MRQIVLDTETTGIGHEQGHRVIEIGCVELIDRKLTGRHFHVYLNPE-RLVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123 +DEFL+DKP F+ SEF F AE I HNA FD+GF+N+EL+ + K D + Sbjct: 60 SDEFLQDKPLFADKVSEFLQFVG--GAELIIHNAAFDMGFLNSELRHVQWKKKLEDYCDV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL+ AR K P RN L++LCKR+GI +R HGALLD+ +L+ VY+ M G S + Sbjct: 118 FDTLTYARDKFPGQRNSLDALCKRFGIDHFNRQLHGALLDAEILAFVYLAMTGGQSSLFA 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + N + + V I+ L+ P+ ELD+H ++ L K + Sbjct: 178 DVEENANNTTVK----VQEIAALRLANPIVVLAEANELDQHQIFVEFLTKKS 225 >gi|171463544|ref|YP_001797657.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193082|gb|ACB44043.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 236 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 82/238 (34%), Positives = 134/238 (56%), Gaps = 16/238 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+++ D ETTGL+ DRIIEIG +E++ T+RTF ++ P R A +HG+ Sbjct: 1 MRQVILDTETTGLNPATGDRIIEIGCIEMVGRRLTDRTFHYYINPE-RDIDAGAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 + EFL DKP F++I + +F + AE + HNA FD+GF++ E + + P S+I Sbjct: 60 SREFLSDKPIFANIVEQLIEFVD--GAEILIHNAAFDLGFLDNEFALLKRPPFRNLASKI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL AR+ P RN L++LC+R+ I+ HR+ HGALLD+ LL++VY+ M G ++ Sbjct: 118 TDTLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYVAMTRGQEDLSI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG----KNAIW 237 + + + L + L + + E+L+ H+K + + K+++W Sbjct: 178 DL-----IDYTVGADSSVHTKALPTNLKLLS-ASNEDLESHEKILAEIAKASKKDSVW 229 >gi|260221145|emb|CBA29417.1| DNA polymerase III subunit epsilon [Curvibacter putative symbiont of Hydra magnipapillata] Length = 236 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 125/242 (51%), Gaps = 19/242 (7%) Query: 7 MRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 MR+IV D ETTG + + DR++EIG VEL++ T +L P GR + AL++ Sbjct: 1 MRQIVLDTETTGFYANHPDNPDRMVEIGCVELVNRKLTGNNLHFYLNP-GRDSDEGALRV 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS- 121 HG+T +FL DKP F I + D+ AE I HNA FD+ F++ EL R + P Sbjct: 60 HGLTTQFLSDKPRFEEIAQQLVDYVG--GAEIIIHNAPFDLSFLDMELGRTGRKPFKTCV 117 Query: 122 -RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL +A+ P RN L++LC R + S R+ HGALLD+ LL+DVYI M G Sbjct: 118 AGVLDTLVMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINMTRGQDA 177 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----I 236 + ++ E+ + +I L +E+ H+ + L K++ + Sbjct: 178 LIMESSAPQEAGIVVEQLDLRSIQL------PVLEANAQEMAAHEDVLSQLDKSSGGKTV 231 Query: 237 WD 238 W Sbjct: 232 WK 233 >gi|288956846|ref|YP_003447187.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510] gi|288909154|dbj|BAI70643.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510] Length = 227 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 132/232 (56%), Gaps = 9/232 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG + R++EIG +EL+++ T F V+L P R PEA +HG+ Sbjct: 1 MREIVLDTETTGFKPEEGHRLVEIGCIELVNHLATGERFHVYLNPE-RDMPPEAFAVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL DKP F+ + ++F F ++ + HNA FD+ F+N EL+ + R ID Sbjct: 60 SEEFLADKPLFNDVAADFVAFIG--DSPLVIHNAAFDMHFLNWELKIAGYPVMPKDRAID 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR+K P S L++LCKR+G+ S+R+ HGALLD+ LL++VY++++ GG Q F Sbjct: 118 TLLMARQKFPGSPATLDALCKRFGVDNSNRTLHGALLDAQLLAEVYLELL-GGRQTGLSF 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + P + +++EE H + ++ + KN +W Sbjct: 177 ---AGGPVSKGGVAGPVRVDRPFREARVFAVSEEEAAAHAEMLKKI-KNPLW 224 >gi|294627921|ref|ZP_06706500.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666553|ref|ZP_06731794.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292597835|gb|EFF41993.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603697|gb|EFF47107.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 244 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T EFL DKP F + EF + + AE I HNA FD+GF++ EL + ++ + Sbjct: 60 TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + +LL +P +T E H+ + L K A+WD Sbjct: 178 FASADAGQQTDAASGMIAFDPALL-LPRPRVA-VTASESQAHEARLAQLRKKAGRALWD 234 >gi|319760362|ref|YP_004124300.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer str. BVAF] gi|318039076|gb|ADV33626.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer str. BVAF] Length = 251 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 86/252 (34%), Positives = 134/252 (53%), Gaps = 17/252 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 + N R ++ D ETTG++ + +IIEIGAVE+++ S T F V+L PN R Sbjct: 1 MNINTTRYVILDTETTGMNKFGIHYEGHKIIEIGAVEIINRSLTKNKFHVYLNPN-RPVD 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 EA K+HGI+D FLKDKP FS I ++F F + + HNA FDVGF+N EL+ N Sbjct: 60 SEAFKIHGISDRFLKDKPVFSDISNKFLSFI--CGSNLVIHNASFDVGFLNFELRETNLK 117 Query: 117 P---LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 IID+L +AR P RN L++LC+RY I IS R+ H AL+D+ +L+ V++ Sbjct: 118 YKTLETYCSIIDSLKLARNLFPGQRNSLDALCERYFIDISQRNLHNALIDAQILAYVFLA 177 Query: 174 MMVGGSQINFG---FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G +++ +++ + + N+ + T EE H++ ++ Sbjct: 178 MTGGQTEMQLTNDIINLDKNTSVLSDMQRSYNVDTQEIKSLNIIYATVEEKTNHNRYLEL 237 Query: 231 LGK---NAIWDR 239 + K +W + Sbjct: 238 IEKQSGKCLWKK 249 >gi|153876055|ref|ZP_02003569.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS] gi|152067479|gb|EDN66429.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS] Length = 239 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 139/239 (58%), Gaps = 15/239 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL K RIIEIG +E+L+ TN+ + FL P+ RK+ EAL +HGI Sbjct: 1 MRQIALDTETTGLSVKDGHRIIEIGCIEILNRRVTNKYYHQFLQPD-RKSDTEALAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LDPSR 122 T EFLKDKP F I ++F +F + AE + HNA FD+ FIN EL+ +++D + Sbjct: 60 THEFLKDKPRFREIVNDFMNFI--KGAELLIHNAAFDMSFINRELELLHQDWQPLEHYCK 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I D+L +A+ +HP +N+L++LCKRYG+ S+R HGALLD+ +L++VY+ M + Sbjct: 118 ITDSLVLAKERHPGQKNNLDALCKRYGVDNSNRQLHGALLDAEILAEVYLTMTAEQVSL- 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIW 237 + N F K T+ IS KR T+ EL H + + + G +W Sbjct: 177 LASEGNNIEFLKNN--TIKRIS-SKRASLTLITPTEGELQAHKQRLTAINKACGGKCLW 232 >gi|261856413|ref|YP_003263696.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus c2] gi|261836882|gb|ACX96649.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus c2] Length = 237 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 93/233 (39%), Positives = 130/233 (55%), Gaps = 11/233 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG+ + R++EIGAVE+++ T +TF +L P R A +HG++ Sbjct: 4 RQIVLDTETTGMPAADGHRLVEIGAVEMIERRVTGKTFHCYLNPE-RLVDEGAFNVHGLS 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPLDPSRI 123 D FL DKP F+ + EF F AE I HNA+FDVGF++AEL R+ + + Sbjct: 63 DAFLADKPKFADVVDEFLAFIA--GAELIIHNAEFDVGFLDAELARLANGGRLADVAGSV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L+IAR+KHP RN L++LC+RY I S R+ HGALLDS +L+DVY+ + G + F Sbjct: 121 TDSLAIARKKHPGQRNSLDALCRRYSIDNSARTLHGALLDSEILADVYLALTGGQKTLGF 180 Query: 184 GFKTNEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 +E E K+ I L R +EE H + TLGK Sbjct: 181 D---SEHGQGDEHKQAASIIRLPADRPPLRVITANEEERAAHAAWLVTLGKEG 230 >gi|15604567|ref|NP_221085.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str. Madrid E] gi|6685391|sp|Q9ZCJ9|DPO3E_RICPR RecName: Full=DNA polymerase III subunit epsilon gi|3861262|emb|CAA15161.1| DNA POLYMERASE III, EPSILON CHAIN (dnaQ) [Rickettsia prowazekii] gi|292572374|gb|ADE30289.1| DNA polymerase III epsilon chain [Rickettsia prowazekii Rp22] Length = 229 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 131/232 (56%), Gaps = 11/232 (4%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +R+I+ D ETTGLD + RI+EIGA+E+++ T + F ++ P R EA K+ Sbjct: 1 MSSLREIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGKHFHFYINPE-RDMPFEAYKI 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI+ EFLKDKP F +I ++F F ++ I HNA FD+ F+N EL +R L+ Sbjct: 60 HGISGEFLKDKPLFKTIANDFLKFIA--DSTLIIHNAPFDIKFLNHELSLLKRTEIKFLE 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDTL +AR P +R L++LCKR+ + S R HGAL D+ LL++VY+ + GG Sbjct: 118 LTNTIDTLVMARNMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVALT-GGR 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 Q F D V + + + + + + TKEEL +H + I + Sbjct: 177 QSTFKMINKPDEI---NNLAVKCVDVQQIKRGIVVKPTKEELQKHKEFIDKI 225 >gi|157964873|ref|YP_001499697.1| DNA polymerase III subunit epsilon [Rickettsia massiliae MTU5] gi|157844649|gb|ABV85150.1| DNA polymerase III epsilon chain [Rickettsia massiliae MTU5] Length = 229 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 136/236 (57%), Gaps = 11/236 (4%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++ Sbjct: 1 MSSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRI 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI+ EFLKDKP F +I +F +F + +++ I HNA FD+ F+N EL +R L+ Sbjct: 60 HGISGEFLKDKPLFHTIADDFLEFIS--DSKLIIHNAPFDIKFLNHELSLLKRTEIKLLE 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++M GG Sbjct: 118 LANTIDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGR 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 Q F D+ ++ + + TKEEL +H + + + K A Sbjct: 177 QSAFKMV---DKSAGINNLATNQVNNQTEQATIVIKPTKEELQKHKEFLSRILKTA 229 >gi|67458568|ref|YP_246192.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2] gi|75536966|sp|Q4UN31|DPO3E_RICFE RecName: Full=DNA polymerase III subunit epsilon gi|67004101|gb|AAY61027.1| DNA polymerase III epsilon chain [Rickettsia felis URRWXCal2] Length = 229 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 86/236 (36%), Positives = 137/236 (58%), Gaps = 11/236 (4%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R +A ++ Sbjct: 1 MSSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFDAYRI 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI+ EFLKDKP F +I +F +F + +++ I HNA FD+ F+N EL +R L+ Sbjct: 60 HGISGEFLKDKPLFHTIADDFLEFIS--DSKLIIHNAPFDIKFLNHELSLLKRAEIKLLE 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 S IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++ GG Sbjct: 118 LSNAIDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELT-GGR 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 Q F D+ + ++ + + TKEEL +H + + ++ K A Sbjct: 177 QSAFKMV---DKSVETNNLATNQVNNKTEQATIVIKPTKEELQKHKEFLSSILKTA 229 >gi|187929152|ref|YP_001899639.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J] gi|187726042|gb|ACD27207.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12J] Length = 242 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 89/237 (37%), Positives = 127/237 (53%), Gaps = 9/237 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL++ DR+IEIG VE+++ T R ++ P R+ A+ +HGI Sbjct: 1 MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T+EF+ DKP F+ I +E D+ Q AE I HNA FD+GF++ E QR+ Sbjct: 60 TNEFVADKPKFAEIVNEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRLGLPAFREHLSGH 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL AR+ P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G Q Sbjct: 118 IDTLREARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRG--QNTL 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL-GKNAIWDR 239 E + ++S L+ L T E K I G +W R Sbjct: 176 VIDMLESGEGASAEAVAVDLSALQLPVLLATEAEAEAHAGVLKEIDKASGGKTVWTR 232 >gi|89067418|ref|ZP_01154931.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola granulosus HTCC2516] gi|89046987|gb|EAR53041.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Oceanicola granulosus HTCC2516] Length = 230 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 97/237 (40%), Positives = 141/237 (59%), Gaps = 8/237 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGAVEL ++ T RT+ ++ P R EA ++HG+ Sbjct: 1 MREIVLDTETTGFDPEDGDRIVEIGAVELDNHMPTGRTYHQYINPQ-RAMPREAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DEFL DKP F+ I F DF +A + HNA FD+ F+NAEL N L S+ +D Sbjct: 60 GDEFLADKPVFARIGRAFLDFVG--DARLVIHNASFDMKFLNAELGWANLPRLPDSQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+++AR K P S L++LC+R+GI S R+ HGALLDS +L++VY++++ GG Q +F Sbjct: 118 TVAMARSKFPGSPVSLDALCRRFGIDNSARTYHGALLDSEILAEVYLELI-GGRQPDFAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 ++ + + + R +PL RIT E H I+ LG+ ++W R Sbjct: 177 SVSQVGGGEAGQD---DWRPRPRPEPLPPRITAAEAAAHQAFIEKLGEASLWARLAG 230 >gi|51473901|ref|YP_067658.1| DNA polymerase III subunit epsilon [Rickettsia typhi str. Wilmington] gi|81826284|sp|Q68W16|DPO3E_RICTY RecName: Full=DNA polymerase III subunit epsilon gi|51460213|gb|AAU04176.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 229 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 134/232 (57%), Gaps = 11/232 (4%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +R+I+ D ETTGLD + RIIEIGA+E+++ T + F ++ P R EA K+ Sbjct: 1 MSSLREIILDTETTGLDPQQGHRIIEIGAIEMVNKVLTGKHFHCYINPE-RDMPFEAYKI 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI+ EFLKDKP F +I ++F F ++ I HNA FD+ F+N EL +R L+ Sbjct: 60 HGISGEFLKDKPLFHTIANDFLKFIA--DSTLIIHNAPFDIKFLNHELSLLKRTEIKFLE 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDTL +AR P +R L++LCKR+ + S R HGAL D+ LL++VY+ + GG Sbjct: 118 LTNTIDTLVMARSMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVALT-GGR 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 Q F D+ + TV I + K + + + TKEEL +H + I + Sbjct: 177 QSTFKMI---DKPNEINNLTVKCIEVQKIKRSIVVKPTKEELQKHKEFIDKI 225 >gi|270156747|ref|ZP_06185404.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968] gi|289164806|ref|YP_003454944.1| DNA polymerase III, epsilon chain [Legionella longbeachae NSW150] gi|269988772|gb|EEZ95026.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968] gi|288857979|emb|CBJ11839.1| putative DNA polymerase III, epsilon chain [Legionella longbeachae NSW150] Length = 233 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 132/232 (56%), Gaps = 10/232 (4%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR++V D ETTG+ R+IEIG VEL+D T F V+L P R A ++HGI Sbjct: 1 MRQVVLDTETTGIGHEHGHRVIEIGCVELIDRKLTGNHFHVYLNPQ-RLVDEGAFRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ--RINKDPLDPSRI 123 ++EFL+DKP F+ + +FW F + AE I HNA FDVGF+N+ELQ NK +I Sbjct: 60 SNEFLQDKPLFADVAEKFWRFIS--GAELIIHNAPFDVGFLNSELQLINWNKKLEVYCKI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL +AR K+P RN L++LCKRYGI +R HGALLD+ +L+ VY+ M G + + Sbjct: 118 TDTLVLAREKYPGQRNSLDALCKRYGIDHFNRELHGALLDAEILAFVYLAMTGGQTSLFA 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + + ++TV L + + + EEL+ H I L K + Sbjct: 178 EVEETSLHVNSKSQETV----ALHLENSVVLPASAEELESHQLFIDFLHKKS 225 >gi|254522635|ref|ZP_05134690.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] gi|219720226|gb|EED38751.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] Length = 243 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 91/239 (38%), Positives = 130/239 (54%), Gaps = 13/239 (5%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ K +RI+EIG VEL T + ++ P+ + A ++ G+ Sbjct: 1 MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDC-EFEQGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T EFL DKP F+ I EF F + AE I HNA FD+GF++ EL + D Sbjct: 60 TLEFLDDKPGFAQIADEFLAFID--GAELIIHNAAFDLGFLDNELSLLGPQYGKITDRCT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL++AR + P RN L++LCKR G+ SHR+ HG LLD+ +L DVYI + G +I Sbjct: 118 VIDTLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 FG + + LL R + + T EL+ H ++ L K A+WD Sbjct: 178 FGLGDEDGGGAGAALQAFDASKLLPRPRVM---ATPSELEAHAARLERLRKKAGHALWD 233 >gi|253996734|ref|YP_003048798.1| DNA polymerase III subunit epsilon [Methylotenera mobilis JLW8] gi|253983413|gb|ACT48271.1| DNA polymerase III, epsilon subunit [Methylotenera mobilis JLW8] Length = 227 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 88/237 (37%), Positives = 129/237 (54%), Gaps = 16/237 (6%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL ++ R+IEI AVE+++ T F +L P+ R P A ++HGI Sbjct: 1 MRQIFLDTETTGLYHAQGHRVIEIAAVEVVNRRLTKHHFHYYLNPD-RDIDPGAQEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 + EFL+DKP F+ I +E F +AE I HNA FDVGF+N EL I + ++ +++ Sbjct: 60 SLEFLQDKPRFADIANELITFIA--DAELIMHNAPFDVGFLNCELGLIGQKKVEEISAKV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL IA+ P RN+L++LCK +GI S R+ HGALLD+ LL+DVY+ M G + Sbjct: 118 TDTLKIAKEMRPGQRNNLDALCKYFGIDNSKRTLHGALLDAELLADVYMAMTRGQDSLMI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWD 238 + +S + EL +H+ + L K N +W+ Sbjct: 178 ALDQPSHETVE--------VSAVSHAPLQVKLANSTELADHEAYLAGLAKSGNCVWN 226 >gi|269958788|ref|YP_003328576.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str. Israel] gi|269848618|gb|ACZ49262.1| DNA polymerase III, epsilon subunit [Anaplasma centrale str. Israel] Length = 232 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 137/241 (56%), Gaps = 11/241 (4%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R+IV D ETTGLD+ DRIIEIG VEL+D+ T + F ++ P R A K+HG Sbjct: 2 RTREIVLDTETTGLDAASGDRIIEIGCVELVDFVMTGQVFHKYINPE-RDIPIAATKIHG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT + +K+ P F+ + +F +F Q++ + HNA FD+ FI E++RI K L + ++ Sbjct: 61 ITTDMVKNMPKFAEMADQFLNFV--QDSVLVIHNAGFDLKFIETEMERIGKTKL-YNPVV 117 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +ARRK P L++LCKR+ I+ S R HGAL D+ LL+ VY+++ GG Q + G Sbjct: 118 DTLEVARRKFPGMPASLDALCKRFDISTSSRRFHGALKDATLLARVYVEL-CGGIQRSLG 176 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYISSN 244 F E +E + R I+ E H ++I + K+ IW+ Y+ ++ Sbjct: 177 FVDGELNQSTKENNASKPVLQAPRT----FTISDLEHKLHMESISKM-KDPIWNMYLKTS 231 Query: 245 Q 245 Sbjct: 232 D 232 >gi|149927491|ref|ZP_01915745.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] gi|149823764|gb|EDM82990.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105] Length = 240 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 126/246 (51%), Gaps = 17/246 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR +V D ETTGL+ + RIIEIG +E+ T+ F ++ P R+ A ++HGI Sbjct: 1 MRYVVLDTETTGLEVRQGHRIIEIGCIEVNGRQVTDHHFHQYINPE-REVDEGAFQVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 +DE L DKP F I +F DF Q + I HNA FD+GF++ EL+R+ + + Sbjct: 60 SDEMLADKPKFKQIAKDFLDFV--QGSTLIIHNASFDIGFLDGELERLGLGKMADYVDGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ID+L +AR P RN+L++LC R G+ +HR HGALLDS +L++VY+ M G + Sbjct: 118 IDSLGMAREMFPGKRNNLDALCDRLGVNNAHRQLHGALLDSQILAEVYLAMTRGQDSLVI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDR 239 D E K L T+EEL H + + K A +W + Sbjct: 178 DLNAQHDDDGVERIK-------LSALNLPEPEPTEEELVLHQAYLADIEKAAKGPSVWSK 230 Query: 240 YISSNQ 245 + + Sbjct: 231 ISQATE 236 >gi|121594487|ref|YP_986383.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42] gi|120606567|gb|ABM42307.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42] Length = 237 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 92/238 (38%), Positives = 131/238 (55%), Gaps = 15/238 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIE+G VEL++ T ++L P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRII 124 +EFL+DKP F+ + + Q AE I HNA FDVGF++ EL+ + PL +I Sbjct: 62 NEFLRDKPKFAERVQDILQYL--QGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVI 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++A+ P RN L+SLC R G+ S R+ HGALLD+ LL+DVYI M G + Sbjct: 120 DTLAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLDAELLADVYINMTRGQDALLIM 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWD 238 D T L R + +EL EH++ + + K++ IW Sbjct: 180 -----DEATAGAGGTTVAAVDLSRIALTVLTASAQELAEHEEVLVQIDKSSSGKTIWR 232 >gi|222110838|ref|YP_002553102.1| DNA polymerase iii subunit epsilon [Acidovorax ebreus TPSY] gi|221730282|gb|ACM33102.1| DNA polymerase III, epsilon subunit [Acidovorax ebreus TPSY] Length = 237 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 92/238 (38%), Positives = 131/238 (55%), Gaps = 15/238 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIE+G VEL++ T ++L P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRII 124 +EFL+DKP F+ + + Q AE I HNA FDVGF++ EL+ + PL +I Sbjct: 62 NEFLRDKPKFAERVQDILQYL--QGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVI 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++A+ P RN L+SLC R G+ S R+ HGALLD+ LL+DVYI M G + Sbjct: 120 DTLAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLDAELLADVYINMTRGQDALLIM 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWD 238 D T L R + +EL EH++ + + K++ IW Sbjct: 180 -----DEATAGAGGTTVAAVDLSRIALTVLTASAQELAEHEEVLVQIDKSSGGKTIWR 232 >gi|21241847|ref|NP_641429.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv. citri str. 306] gi|21107228|gb|AAM35965.1| DNA polymerase III epsilon chain [Xanthomonas axonopodis pv. citri str. 306] Length = 244 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T EFL DKP F + EF + + AE I HNA FD+GF++ EL + ++ + Sbjct: 60 TLEFLADKPLFGEVVDEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + +LL +P +T E H+ + L K A+WD Sbjct: 178 FASADAGQQADAASGMIAFDPALL-LPRPRVA-VTASESQAHEARLAQLRKKAGRALWD 234 >gi|27904727|ref|NP_777853.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340041|sp|Q89AN3|DPO3E_BUCBP RecName: Full=DNA polymerase III subunit epsilon gi|27904124|gb|AAO26958.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 245 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 96/251 (38%), Positives = 137/251 (54%), Gaps = 20/251 (7%) Query: 3 RKNKMRKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 K RKIV DIETTG++ KN +IIEIGAVE+++ T F ++ PN R Sbjct: 1 MKKYDRKIVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPN-RLIDK 59 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--- 114 ++ K+HGITD FL DKP F I +F ++ N++ I HNAKFDVGFIN EL IN Sbjct: 60 QSFKIHGITDNFLLDKPKFHEISVKFLEYI--TNSDLIIHNAKFDVGFINYELNMINSDK 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + D ++DTL +AR+ P +N L++LC RY I +SHR H AL+D+ LL+ VY M Sbjct: 118 RKISDYCNVVDTLPLARQLFPGKKNSLDALCNRYKINVSHRDFHSALIDAKLLAKVYTFM 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG-- 232 I+ K + ++ K + + TK+EL +H K ++ + Sbjct: 178 TSFQQSISIFDKNSNLNSIQKNAKLDSRVPF----RSTLLLATKDELQQHMKYLKYVKQE 233 Query: 233 -KNAIW--DRY 240 N +W D+Y Sbjct: 234 TGNCVWLEDKY 244 >gi|58580665|ref|YP_199681.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622598|ref|YP_449970.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166710938|ref|ZP_02242145.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzicola BLS256] gi|58425259|gb|AAW74296.1| DNA polymerase III epsilon chain [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366538|dbj|BAE67696.1| DNA polymerase III epsilon chai [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 244 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T EFL DKP F + EF + + AE I HNA FD+GF++ EL + ++ + Sbjct: 60 TLEFLADKPLFGEVVEEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + +LL +P +T E H+ + L K A+WD Sbjct: 178 FASADAGQQTDAASGMIAFDPALL-LPRPRVA-VTASESQAHEARLVQLRKKAGRALWD 234 >gi|167949084|ref|ZP_02536158.1| DNA polymerase III, epsilon subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 203 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 83/202 (41%), Positives = 121/202 (59%), Gaps = 7/202 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ + RIIEIG VE++D + F +L P+ R+ A+++HGI Sbjct: 1 MRQIVLDTETTGLEPQQGHRIIEIGCVEMIDRRLSGNNFHQYLQPD-REIDAGAIEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP---SR 122 T+EFL DKP F+ + ++F D+ + AE I HNA FDVGF+N ELQ + D Sbjct: 60 TNEFLADKPRFADLAADFLDYI--RGAELIIHNAPFDVGFLNHELQLMGADSPPIGELCA 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDTL +A++ HP RN L++LCKRY + + R HGALLD+ +L+DVY+ M G + ++ Sbjct: 118 VIDTLVMAKKMHPGQRNSLDALCKRYDVDNTQRELHGALLDAEILADVYLAMTGGQATLS 177 Query: 183 FGFKTNEDRFFKEEKKTVPNIS 204 E + + I Sbjct: 178 LEMTRAEGESTADVDGGIRRIR 199 >gi|15893035|ref|NP_360749.1| DNA polymerase III subunit epsilon [Rickettsia conorii str. Malish 7] gi|20137858|sp|Q92GL1|DPO3E_RICCN RecName: Full=DNA polymerase III subunit epsilon gi|15620236|gb|AAL03650.1| DNA polymerase III epsilon chain [Rickettsia conorii str. Malish 7] Length = 230 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 137/236 (58%), Gaps = 11/236 (4%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++ Sbjct: 1 MSSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRI 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI+ EFLKDKP F +I +F +F + +++ I HNA FD+ F+N EL +R + L+ Sbjct: 60 HGISGEFLKDKPLFHTIADDFLEFIS--DSKLIIHNAPFDIKFLNHELSLLKRTDIKLLE 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++M GG Sbjct: 118 LANTIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGR 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 Q F D+ ++ + + TKEEL +H + + + K A Sbjct: 177 QSAFKMV---DKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA 229 >gi|157828957|ref|YP_001495199.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933682|ref|YP_001650471.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str. Iowa] gi|157801438|gb|ABV76691.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908769|gb|ABY73065.1| DNA polymerase III, epsilon chain [Rickettsia rickettsii str. Iowa] Length = 229 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 137/236 (58%), Gaps = 11/236 (4%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++ Sbjct: 1 MSSLREIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRI 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI+ EFLKDKP F +I +F +F + +++ I HNA FD+ F+N EL +R + L+ Sbjct: 60 HGISGEFLKDKPLFHTIADDFLEFIS--DSKLIIHNAPFDIKFLNHELSLLKRTDIKLLE 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++M GG Sbjct: 118 LANTIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGR 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 Q F D+ ++ + + TKEEL +H + + + K A Sbjct: 177 QSAFKMV---DKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA 229 >gi|145641463|ref|ZP_01797041.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] gi|145273754|gb|EDK13622.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.4-21] Length = 205 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 86/188 (45%), Positives = 120/188 (63%), Gaps = 13/188 (6%) Query: 1 MIRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI N R+IV D ETTG+ + IIEIGAVEL++ T F +++ P+ R Sbjct: 1 MINPN--RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPD-RPV 57 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+A+K+HGITDE L DKP F + +F D+ N AE + HNA FDVGF++ E +++N Sbjct: 58 DPDAIKVHGITDEMLADKPEFKEVAQDFLDYIN--GAELLIHNAPFDVGFMDYEFRKLNL 115 Query: 116 D--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + D + DTL +AR+ +P RN+L++LC R GI S R+ HGALLD+ +L+DVY+ Sbjct: 116 NVKTDDICLVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYL- 174 Query: 174 MMVGGSQI 181 MM GG QI Sbjct: 175 MMTGGKQI 182 >gi|297538708|ref|YP_003674477.1| DNA polymerase III subunit epsilon [Methylotenera sp. 301] gi|297258055|gb|ADI29900.1| DNA polymerase III, epsilon subunit [Methylotenera sp. 301] Length = 235 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 134/239 (56%), Gaps = 16/239 (6%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL ++ R+IE+ AVE+++ T + F +L P+ R+ A ++HGI Sbjct: 1 MRQIFLDTETTGLYHAQGHRVIEVAAVEVINRRLTKQHFHYYLNPD-REIDQGAQEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 + EFL+DKP F+ I +E F ++E I HNA FDVGF+N E I + P++ ++I Sbjct: 60 SLEFLQDKPHFADIANELIAFIA--DSELIMHNAPFDVGFLNREFGLIEQKPVEAITAKI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL IA+ P RN L++LCK YGI S R+ HGALLD+ LL+DVY+ M G + Sbjct: 118 TDTLKIAKEMRPGQRNSLDALCKHYGIDNSKRTLHGALLDAELLADVYMAMTRGQDSLMM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK--NAIWDRY 240 + + ++ + L + E+ HD+ I +L K + +W ++ Sbjct: 178 ELDKPQQKNSDAIQEIKQPV--------LVKLANQAEISAHDEYIASLAKSSDCLWAKF 228 >gi|82702745|ref|YP_412311.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] gi|82410810|gb|ABB74919.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] Length = 234 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 124/245 (50%), Gaps = 19/245 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL+ K RIIEIGAVE++ T R F +L P R+ AL++HGI Sbjct: 1 MRQIFIDTETTGLEPKLGHRIIEIGAVEMMSRRLTGRRFHHYLNPE-REIEEGALQVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123 T EFL DK F+ + E +F + AE I HNA FDV F++ EL N L Sbjct: 60 TSEFLLDKRKFADVVHELLEFID--GAELIMHNAAFDVAFLDHELGLANLPALCECCHSV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL +A+ P RN L++LC+RY + S R+ HGALLD+ LL++VY+ M G + Sbjct: 118 TDTLKMAKELFPGKRNSLDALCERYEVDNSRRALHGALLDAELLAEVYLAMTRGQESLLM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 + + + + + EEL+ H + ++ + K +W R Sbjct: 178 ELEAPSPLDLDISLHDL---------QLVVLPASAEELEAHARQLEMIEKESKGKCLWMR 228 Query: 240 YISSN 244 + Sbjct: 229 LDPAE 233 >gi|319762901|ref|YP_004126838.1| DNA polymerase iii, epsilon subunit [Alicycliphilus denitrificans BC] gi|330824980|ref|YP_004388283.1| DNA polymerase III subunit epsilon [Alicycliphilus denitrificans K601] gi|317117462|gb|ADU99950.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans BC] gi|329310352|gb|AEB84767.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans K601] Length = 242 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 137/245 (55%), Gaps = 15/245 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++N DRIIE+G VELL T ++L P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAENGDRIIELGCVELLSRKLTGNNLHLYLNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRII 124 +EFL+DKP F+ + + ++ + AE I HNA FDVGF++ EL+ PL +I Sbjct: 62 NEFLRDKPKFAEVVHDILEYL--RGAELIIHNASFDVGFLDKELELAGLPPLAAHVDGVI 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++A+ P RN L++LC R + S R+ HGALLD+ LL+DVYI M G + Sbjct: 120 DTLAMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINMTRGQDALLIM 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRY 240 +T E V + L + P+ + +EL EH+ + + K++ IW Sbjct: 180 DETAN----GEGGVKVAAVDLSRLVLPVLL-ASDQELAEHEDLLAQIDKSSAGKTIWRTR 234 Query: 241 ISSNQ 245 + + Sbjct: 235 AEAQK 239 >gi|34581277|ref|ZP_00142757.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246] gi|229587086|ref|YP_002845587.1| DNA polymerase III subunit epsilon [Rickettsia africae ESF-5] gi|238650388|ref|YP_002916240.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str. Rustic] gi|28262662|gb|EAA26166.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246] gi|228022136|gb|ACP53844.1| DNA polymerase III epsilon chain [Rickettsia africae ESF-5] gi|238624486|gb|ACR47192.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str. Rustic] Length = 229 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 137/236 (58%), Gaps = 11/236 (4%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++ Sbjct: 1 MSSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRI 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI+ EFLKDKP F +I +F +F + +++ I HNA FD+ F+N EL +R + L+ Sbjct: 60 HGISGEFLKDKPLFHTIADDFLEFIS--DSKLIIHNAPFDIKFLNHELSLLKRTDIKLLE 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++M GG Sbjct: 118 LANTIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELM-GGR 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 Q F D+ ++ + + TKEEL +H + + + K A Sbjct: 177 QSAFKMV---DKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA 229 >gi|188578361|ref|YP_001915290.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522813|gb|ACD60758.1| DNA polymerase III, epsilon subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 244 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 12/239 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGL+ + +R++EIGAVELL+ + F +L P+ P A ++ G+ Sbjct: 1 MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDC-DFEPGAQEVTGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSR 122 T EFL DKP F + EF + + AE I HNA FD+GF++ EL + ++ + Sbjct: 60 TLEFLADKPLFGDVVEEFLAYID--GAELIIHNAAFDLGFLDNELALLGDHYGRIVERAT 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTL +AR ++P RN L++LCKR G+ SHR HGALLD+ +L+DVYI + G +I Sbjct: 118 VVDTLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIG 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN---AIWD 238 F + + +LL +P +T E H+ + L K A+WD Sbjct: 178 FASADAGQQTDAASGMIAFDPALL-LPRPRVA-VTASESQAHEARLVQLRKKAGRALWD 234 >gi|91205177|ref|YP_537532.1| DNA polymerase III subunit epsilon [Rickettsia bellii RML369-C] gi|157827486|ref|YP_001496550.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389] gi|122425898|sp|Q1RJM1|DPO3E_RICBR RecName: Full=DNA polymerase III subunit epsilon gi|91068721|gb|ABE04443.1| DNA polymerase III epsilon chain [Rickettsia bellii RML369-C] gi|157802790|gb|ABV79513.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389] Length = 229 Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 89/236 (37%), Positives = 132/236 (55%), Gaps = 11/236 (4%) Query: 4 KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +R+I+ D ETTGLD K RI+EIGA+E+++ T R F +L P R EA ++ Sbjct: 1 MSSLREIILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPE-RDMPFEAYRI 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI+ EFLKDKP F +I +F +F +++ + HNA FDV F+N EL +R L+ Sbjct: 60 HGISGEFLKDKPLFHTIADDFLEFIA--DSKLVIHNAPFDVKFLNHELSLLKRAEIKLLE 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IDTL +AR P S+ L++LCKR+ + S R HGAL D+ LL++VY+++ GG Sbjct: 118 LEHAIDTLVMARSMFPGSKYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELT-GGR 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 Q F D+ K + + + TKEEL +H + + + K A Sbjct: 177 QSAFKM---LDKAAKINNLSYNRLDSQAHRNIPVIKPTKEELQKHKEFLSRVLKQA 229 >gi|241763763|ref|ZP_04761810.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN] gi|241366982|gb|EER61378.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN] Length = 237 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 89/238 (37%), Positives = 131/238 (55%), Gaps = 15/238 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++ DRIIEIG VEL+ T +L P R + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSAEGGDRIIEIGCVELVSRKLTGNNKHFYLNPE-RDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124 +EFL+DKP F+++ E ++ Q AE I HNA FDVGF+N EL+ + + L + Sbjct: 62 NEFLRDKPKFAAVADELLEYL--QGAEVIIHNAAFDVGFLNKELELLGRPALHTFVDSVT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++A+ +P RN L++LC R G+ S R+ HGALLD+ LL+DVYI + G + Sbjct: 120 DTLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLI- 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 +D I L P+ ++E+ H++ + + G IW Sbjct: 179 ---IDDAQDSAGGGHFVQIDLRSFTLPVLP-ANEQEIAAHEEVLVQIDKASGGKTIWR 232 >gi|299066469|emb|CBJ37657.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum CMR15] Length = 242 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 79/193 (40%), Positives = 113/193 (58%), Gaps = 6/193 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R + P R+ A+ +HGI Sbjct: 1 MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYFNPE-RQIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T+EF+ DKP F+ + E D+ Q AE I HNA FD+GF++ E +R+ Sbjct: 60 TNEFVADKPKFAEVVDEIRDYV--QGAEAIIHNAAFDLGFLDMEFKRLGLPSFREHLDGH 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL ARR P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 118 IDTLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVI 177 Query: 184 GFKTNEDRFFKEE 196 + + E Sbjct: 178 DMLESGETAAAEA 190 >gi|171057726|ref|YP_001790075.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6] gi|170775171|gb|ACB33310.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6] Length = 241 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 144/247 (58%), Gaps = 15/247 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL + DR++E+G VE+++ T R + P R N EA+++HG+ Sbjct: 1 MRQIFLDTETTGLSHESGDRVVELGCVEMVNRRLTGRNLHHYFNPQ-RANHEEAVRVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SRI 123 TD FL DKP FS++ EF DF ++AE IAHNA FDVGF++AEL+RI PL ++ Sbjct: 60 TDAFLADKPLFSAVAQEFVDFV--RDAEIIAHNANFDVGFLDAELKRIGHPPLKQLVDKV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L +AR + P N L++LC+R + + R+ HGALLD+ LL++VYI+M G + + Sbjct: 118 TDSLVMAREQFPGKANSLDALCRRLEVDNTSRTVHGALLDAGLLAEVYIRMTRGQNSL-- 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK-EELDEHDKTIQTLGKNA----IWD 238 ++ E++ P I++ L + + EE+ H+ + L K++ +W Sbjct: 176 --VIDDSPVQSEQQVEQPLIAVDLTAFVLPVLVAEDEEIAAHEAVLSGLDKSSGGKTLWR 233 Query: 239 RYISSNQ 245 +S Q Sbjct: 234 SIGASVQ 240 >gi|74317680|ref|YP_315420.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC 25259] gi|74057175|gb|AAZ97615.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans ATCC 25259] Length = 232 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 80/198 (40%), Positives = 116/198 (58%), Gaps = 6/198 (3%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGLD + RIIE+ AVE+++ T ++ P+ R A+++HGI Sbjct: 1 MRQIILDTETTGLDPAQGHRIIEVAAVEMVNRRLTGNHLHRYVNPD-RDIDAGAMQVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--I 123 T EFL+DKP F I EF DF + AE I HNA FDVGF+N EL+ + L + Sbjct: 60 TPEFLQDKPRFGDIAREFVDFID--GAELIIHNAPFDVGFLNMELRLLGMPLLATCCGGV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL++A+ HP RN+L++LCKRY + + R+ HGALLD LL+ VY+ + G ++ Sbjct: 118 TDTLAMAKALHPGQRNNLDALCKRYAVDNTARTLHGALLDCELLAAVYLALTRGQESLSI 177 Query: 184 GFKTNEDRFFKEEKKTVP 201 G + + + P Sbjct: 178 GLEIPRSESGRAADRPRP 195 >gi|302878569|ref|YP_003847133.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] gi|302581358|gb|ADL55369.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] Length = 233 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 131/246 (53%), Gaps = 23/246 (9%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MRKIV D ETTGLD K RIIEI A+ L + R F +L P R+ +A ++HG Sbjct: 1 MRKIVLDTETTGLDPKKGHRIIEIAAIALEGRKVSKRHFHHYLDPE-REVDEDAARVHGF 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + LK + F+ I + F +F + AE +AHNA FD+ FIN EL+ + PL+ + ++D Sbjct: 60 TWDMLKGRAKFADIATSFLEFVD--GAELMAHNAPFDMSFINNELRLLGLPPLE-NPVVD 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR HP +N L++LC RY I +HR+ HGALLD+ LL++VY M G Sbjct: 117 TLKMAREMHPGKKNGLDALCSRYEIDNTHRTLHGALLDTELLAEVYFAMTRGQ------- 169 Query: 186 KTNEDRFFKEEKKTVPNISLL----KRDKPLFTRITKEELDEHDKTIQTLGK----NAIW 237 E ++E I++L R + +EL H + + + K +W Sbjct: 170 ---ESLLGEDEPPAAREIAVLSTDASRPTVRVLLPSPDELAVHAQQLLDIDKASKGACLW 226 Query: 238 DRYISS 243 + S+ Sbjct: 227 TKLESA 232 >gi|325267110|ref|ZP_08133779.1| DNA-directed DNA polymerase III epsilon subunit [Kingella denitrificans ATCC 33394] gi|324981463|gb|EGC17106.1| DNA-directed DNA polymerase III epsilon subunit [Kingella denitrificans ATCC 33394] Length = 245 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 9/234 (3%) Query: 7 MRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+I+ D ETTG + DR+IE +E+++ T +++ P R EA + Sbjct: 3 QRQIILDTETTGFEHSRADNPDRMIEFAGLEMVNRQFTQNDLHLYIHPE-RDIPAEATAV 61 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-S 121 HGIT + L DKP F+ + + +DF + AE I HNAKFDVGF+NAE R+ +D Sbjct: 62 HGITLDDLADKPVFADVAQQIFDFL--KGAELIIHNAKFDVGFLNAEFARVGLPNIDSVC 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DTL +AR+++P +N L++LC R G+ S R HGAL+D LL VY+ M G + Sbjct: 120 TVVDTLEMARKRYPGQKNSLDALCTRLGVDRSRRVLHGALIDCELLGGVYLAMTRGQFSL 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + F + K + L K ++EE H+ + L K A Sbjct: 180 DDAFAADNAVSAGNAAKGA-LAAPLSAGKLKVQAASEEECAAHENYLDGLDKAA 232 >gi|239947177|ref|ZP_04698930.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239921453|gb|EER21477.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 240 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 133/232 (57%), Gaps = 11/232 (4%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++ Sbjct: 12 MSSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRM 70 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HGI+ EFLKDKP F +I +F +F +++ I HNA FD+ F+N EL +R L+ Sbjct: 71 HGISGEFLKDKPLFHTIADDFLEFIA--DSKLIIHNAPFDIKFLNHELSLLKRAEIKLLE 128 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDTL +AR P S+ +L++LCKR+ + S R HGAL D+ LL++VY+++M GG Sbjct: 129 LANTIDTLVMARSMFPGSKYNLDALCKRFKVDNSSRQLHGALKDAALLAEVYVELM-GGR 187 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 Q F D+ ++ + + TKEEL +H + I + Sbjct: 188 QSAFKMV---DKSAGINNLVTNQVNNKTEQATIVIKPTKEELQKHKEFINKI 236 >gi|89900967|ref|YP_523438.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118] gi|89345704|gb|ABD69907.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118] Length = 233 Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 87/240 (36%), Positives = 123/240 (51%), Gaps = 16/240 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL + DRIIEIG VEL T +L P GR++ +AL++HGI Sbjct: 1 MRQIFLDTETTGLSADTGDRIIEIGCVELFKRKLTGNNKHFYLNP-GRESHEDALRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T FLKDKP F ++ E + ++AE I HNA FD+GF+N EL + + + Sbjct: 60 TSAFLKDKPKFEAVADELLAYV--KDAEIIIHNAPFDLGFLNKELALLGRPRFKEFVGSV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL +A+ P RN LN+LC R G+ S R+ HGALLD+ LL+DVYI + G + Sbjct: 118 TDTLVMAKEMFPGKRNSLNALCDRLGVDNSGRALHGALLDAELLADVYINLTRGQDALLM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 E + + + +I L +E HD + + K +W + Sbjct: 178 EAGATESESLQVVQIDLGSIVL------PVLAANDQESAAHDDVLNQIDKASGNKTVWRK 231 >gi|296115251|ref|ZP_06833892.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter hansenii ATCC 23769] gi|295978352|gb|EFG85089.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter hansenii ATCC 23769] Length = 226 Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 88/233 (37%), Positives = 125/233 (53%), Gaps = 12/233 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I+FD ETTGLD DR+IEI A+EL+ + R+F+V + P R EA ++HG T Sbjct: 3 RSILFDTETTGLDPLNGDRVIEIAALELIGDLPSGRSFRVLIDPE-RDVPEEASRVHGFT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ +P F+ I EF F + E IAHNA FD GF+NAE +R L +R++DT Sbjct: 62 RADLEGQPKFAQIADEFLAFIGDD--ELIAHNAAFDFGFLNAEFRRAGLPELAMTRMVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L IAR + P N L++LC+R+ I +S R+ H ALLD LL++VYI++ GG Q G Sbjct: 120 LQIARARFPGMPNSLDALCRRFSIDLSARTTHNALLDCKLLAEVYIEL-SGGRQRGLGLS 178 Query: 187 TNE-DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 E T P + R P E+ H + + + + +W Sbjct: 179 VEEGGTPSAAYDYTRPAGHAVVRVVP-----DAAEIAAHARFVDEIS-DPLWR 225 >gi|300691174|ref|YP_003752169.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07] gi|299078234|emb|CBJ50881.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07] Length = 242 Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 80/178 (44%), Positives = 112/178 (62%), Gaps = 6/178 (3%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL++ DR+IEIG VEL++ T R ++ P R+ A+ +HGI Sbjct: 1 MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPE-REIDAGAMAVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 T+EF+ DKP F+ I +E D+ Q AE I HNA FD+GF++ E QR+ Sbjct: 60 TNEFVADKPKFAEIVAEIRDYV--QGAEAIIHNAAFDLGFLDMEFQRLKLPSFREHLAGH 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 IDTL ARR P RN L++LC R G++ +HR+ HGALLD+ LL++VY+ M G + + Sbjct: 118 IDTLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTL 175 >gi|157803402|ref|YP_001491951.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str. McKiel] gi|157784665|gb|ABV73166.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str. McKiel] Length = 229 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 133/232 (57%), Gaps = 11/232 (4%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +R+I+ D ETTGLD + RI+EIGA+E+++ T R F ++ P R EA ++ Sbjct: 1 MSSLREIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHFYINPE-RDMPFEAYRI 59 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLD 119 HG++DEFLKDKP F +I +F +F + +++ I HNA FD+ F+N EL +R L+ Sbjct: 60 HGLSDEFLKDKPLFHTIADDFLEFIS--DSKLIIHNAPFDIKFLNHELSLLKRTEIKLLE 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDTL +AR P ++ +L++LCKR+ + S R H AL D+ LL++VY+ + GG Sbjct: 118 LANTIDTLVMARSMFPGAKYNLDALCKRFKVDNSGRQVHSALKDAALLAEVYVALT-GGR 176 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 Q F DR + ++ + + + TKEEL +H I + Sbjct: 177 QSTFKIV---DRSIRINNLATHQVNNKTQQTTIVIKPTKEELQKHKDFINKI 225 >gi|121609336|ref|YP_997143.1| DNA polymerase III subunit epsilon [Verminephrobacter eiseniae EF01-2] gi|121553976|gb|ABM58125.1| DNA polymerase III, epsilon subunit [Verminephrobacter eiseniae EF01-2] Length = 237 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 130/238 (54%), Gaps = 15/238 (6%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL + DRIIE+G VELL+ T ++ P GR + +ALK+HGI+ Sbjct: 3 RQIVLDTETTGLSADSGDRIIELGCVELLNRKLTGNNLHLYFNP-GRDSHEDALKVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124 +EFLKDKP F+ + + + Q AE I HNA FDVGF+N EL+ L R+ Sbjct: 62 NEFLKDKPRFAELVDDILQYL--QGAELIIHNAAFDVGFLNKELELAGHPALAHCVERVT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++A+ +P RN L++LC R G+ S R+ HGALLD+ LL+DVYI + G + Sbjct: 120 DTLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYIHLTRGQKAL--- 176 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 +E + + +P I L P+ +E H + + + G IW Sbjct: 177 LIADEAQPSATDLPLLP-IDLHALVLPVL-HANAQEQQAHAEVLAQIDKASGGKTIWR 232 >gi|219681615|ref|YP_002468001.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682172|ref|YP_002468556.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471303|ref|ZP_05635302.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621905|gb|ACL30061.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624458|gb|ACL30613.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311087677|gb|ADP67756.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 237 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 96/244 (39%), Positives = 135/244 (55%), Gaps = 16/244 (6%) Query: 4 KNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 N+ R I+ D ETTG++ N RIIEIGAVE++D T F V++ P GR Sbjct: 1 MNRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ALK+HGIT++FL DKP F I F ++ +N+ + HNA FDVGFIN EL+ +NK Sbjct: 60 ALKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIK 117 Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 IIDTL +AR+ P +N L++LC RY I SHR+ H A++DS+LL +Y+ M Sbjct: 118 INTFCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTG 177 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-- 234 G + N FK+ KK + LK + T +E D H+K +Q + Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233 Query: 235 AIWD 238 +W+ Sbjct: 234 CLWN 237 >gi|311087143|gb|ADP67223.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 237 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 95/244 (38%), Positives = 135/244 (55%), Gaps = 16/244 (6%) Query: 4 KNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 N+ R I+ D ETTG++ N RIIEIGAVE++D T F V++ P GR Sbjct: 1 MNRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ALK+HGIT++FL DKP F I F ++ +N+ + HNA FD+GFIN EL+ +NK Sbjct: 60 ALKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDIGFINQELEILNKKIK 117 Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 IIDTL +AR+ P +N L++LC RY I SHR+ H A++DS+LL +Y+ M Sbjct: 118 INTFCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTG 177 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-- 234 G + N FK+ KK + LK + T +E D H+K +Q + Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233 Query: 235 AIWD 238 +W+ Sbjct: 234 CLWN 237 >gi|311085987|gb|ADP66069.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 237 Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats. Identities = 95/244 (38%), Positives = 135/244 (55%), Gaps = 16/244 (6%) Query: 4 KNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 N+ R I+ D ETTG++ N RIIEIGAVE++D T F V++ P GR Sbjct: 1 MNRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ALK+HGIT++FL DKP F I F ++ +N+ + HNA FDVGFIN EL+ +NK Sbjct: 60 ALKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIK 117 Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 I+DTL +AR+ P +N L++LC RY I SHR+ H A++DS+LL +Y+ M Sbjct: 118 INTFCSIVDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTG 177 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-- 234 G + N FK+ KK + LK + T +E D H+K +Q + Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233 Query: 235 AIWD 238 +W+ Sbjct: 234 CLWN 237 >gi|262372107|ref|ZP_06065386.1| ribonuclease HI [Acinetobacter junii SH205] gi|262312132|gb|EEY93217.1| ribonuclease HI [Acinetobacter junii SH205] Length = 448 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 132/229 (57%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + NDRIIE+GA+E+++ T + +++ P K +++ +HGIT Sbjct: 221 RQLILDTETTGFYYQDNDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVDVHGIT 278 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 DEFL DKP ++ I ++F + AE IAHNA FD+ F++ E +R L + D Sbjct: 279 DEFLADKPKYAEIADVLFEFL--KGAEIIAHNATFDMNFLDMEFKRAGLPALSEVCEVTD 336 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M G Q++F Sbjct: 337 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGG--QVSFDM 394 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++ K T + + D P+ T +EL +H+ ++ + Sbjct: 395 DALSQTEQQQNKTTRQRVQI---DLPIIY-PTDDELQQHETWVKQFEEK 439 >gi|58584800|ref|YP_198373.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419116|gb|AAW71131.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 231 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 138/241 (57%), Gaps = 11/241 (4%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +NK+R+IV D ETTGLD + RIIEIG VEL++ T + F +L P R + K Sbjct: 1 MENKLREIVLDTETTGLDIESGHRIIEIGCVELINRIPTGKVFHKYLNPE-RDIPYHSFK 59 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI++EFL+DKP FS + EF DF + I HNA+FD+ F+N EL ++N + Sbjct: 60 IHGISEEFLEDKPLFSDVVFEFLDFIS--GDILIIHNAEFDIKFLNMELGKLNARLISSD 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R++DTL +AR+K S L++LCKR+ I++ +R HGAL D+ LL+ VY+++ G Sbjct: 118 RVLDTLPLARKKFVGSPASLSALCKRFDISLENRELHGALTDAGLLAKVYVELTGGLQTF 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F + +D + V N++ + + EE++EH K + + N +W I Sbjct: 178 LFDNECKQDHNSAFIQHKVRNLTCREHS------PSNEEINEHRKLLGKI-DNPLWKERI 230 Query: 242 S 242 Sbjct: 231 E 231 >gi|71892007|ref|YP_277737.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796113|gb|AAZ40864.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 249 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 91/252 (36%), Positives = 141/252 (55%), Gaps = 17/252 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 + N +R+IV D ETTG++ + R+IEIGAVE+++ T+ TF V+L PN R Sbjct: 1 MSTNIIRQIVLDTETTGMNKFGPHYEGHRVIEIGAVEIINRHLTDNTFHVYLKPN-RMID 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-- 114 EA+++HGI+D+FLK+KP FS I +EF F + +E I HNA FD+GF+N EL+ Sbjct: 60 IEAIQVHGISDQFLKNKPIFSEIINEFLTFI--RGSELIIHNASFDLGFLNQELRICKAN 117 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH-RSKHGALLDSHLLSDVYI 172 K +ID+L +AR+K P RN L++LC+RY I + R+ H ALLD+ LL++V++ Sbjct: 118 SKKIESYCTVIDSLKLARKKFPGQRNSLDALCERYSINNGNRRNLHSALLDARLLANVFL 177 Query: 173 KMMVGGSQINFG--FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 M G ++ F TN + N + + ++E H++ + + Sbjct: 178 SMSGGQIKMKFMEIMNTNISNNKINNIIGLNNTKCINKRSLRIIYANEQEKLAHEEYLDS 237 Query: 231 ---LGKNAIWDR 239 L K IW + Sbjct: 238 IQQLNKFCIWRQ 249 >gi|241758776|ref|ZP_04756889.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114] gi|241320984|gb|EER57197.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114] Length = 245 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 133/245 (54%), Gaps = 15/245 (6%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R+I+ D ETTGL +N DR++E +E+++ T+ +++ P R EA K+HG+ Sbjct: 3 QRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGL 61 Query: 66 TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121 T E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 62 TIEVLEAKNAPPFAQVGKQIADFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGC 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++ DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Sbjct: 120 KVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQ--- 176 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 F E E K+TV I+ KR + + +EL H+K + LG+ +W + Sbjct: 177 -FDLMGGEAEEEGEVKQTV--IAETKRTSQLKVIKANADELAAHEKYLDDLGEACVWRKA 233 Query: 241 ISSNQ 245 +S++ Sbjct: 234 ETSDE 238 >gi|311086562|gb|ADP66643.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 237 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 96/243 (39%), Positives = 134/243 (55%), Gaps = 16/243 (6%) Query: 4 KNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 N+ R I+ D ETTG++ N RIIEIGAVE++D T F V++ P GR Sbjct: 1 MNRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ALK+HGIT++FL DKP F I F ++ +N+ + HNA FDVGFIN EL+ +NK Sbjct: 60 ALKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIK 117 Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 IIDTL +AR+ P +N L++LC RY I SHR+ H A++DS+LL +Y+ M Sbjct: 118 INTFCSIIDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTG 177 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-- 234 G + N FK+ KK + LK + T +E D H+K +Q + Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233 Query: 235 AIW 237 +W Sbjct: 234 CLW 236 >gi|114777499|ref|ZP_01452496.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus ferrooxydans PV-1] gi|114552281|gb|EAU54783.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus ferrooxydans PV-1] Length = 300 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 129/248 (52%), Gaps = 22/248 (8%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT---NRTFQVFLCPNGRKNSPEALK 61 MR I+ D ETTGL DR++EIGA+E+L+ F ++ P R E ++ Sbjct: 52 DMRLIMLDTETTGLSPLNGDRMVEIGAIEVLNRKVLSGDKHVFHRYINPE-RNIPDEVVR 110 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI + +KD+P+F I EF DF + A + HNA FD+GFI EL+ N + Sbjct: 111 IHGIDNAKVKDQPTFREIAQEFLDFI--EGATLVIHNAPFDLGFIMNELRINNFPEIGHM 168 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++IDTL AR KHP RN+L++LC RY I HR HGALLDS LL++VY+ M GG Q Sbjct: 169 QVIDTLVFAREKHPHQRNNLDALCDRYNIERGHRELHGALLDSELLAEVYLGMT-GGRQF 227 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR--------ITKEELDEHDKTIQTL-- 231 + G R +P S + +K R I +E+L H ++ + Sbjct: 228 SLGMDAT--RLPASAFVQLPETSRGRSEKAETARIMRRKALHIPEEDLSAHHLMLKRIHK 285 Query: 232 --GKNAIW 237 G IW Sbjct: 286 ESGGQCIW 293 >gi|146329568|ref|YP_001209798.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus VCS1703A] gi|146233038|gb|ABQ14016.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus VCS1703A] Length = 233 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 129/236 (54%), Gaps = 14/236 (5%) Query: 7 MRKIVFDIETTGLD------SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 R ++FD ETTG++ ++ RIIEIG VEL+D T F +L P + P+A Sbjct: 3 FRSVIFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPE-QPVDPQAF 61 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-- 118 K+HGI+DEFL DKP F + EF + + E +AHN FD FI+ ELQ D Sbjct: 62 KVHGISDEFLADKPFFKDVLPEFEAYLASAD-ELVAHNIAFDRQFIDRELQLAGCDYRLG 120 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 D ++D+L IAR K +RN+L++LCKR+G+ + R HGALLD+ LL++VY+K+ G Sbjct: 121 DKFTLVDSLKIAREKFAGARNNLDALCKRFGVDNTGRELHGALLDAQLLAEVYLKLTGGQ 180 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP-LFTRITKEELDEHDKTIQTLGK 233 S ++F E+K + K L + + E H+K ++ L + Sbjct: 181 SDLSFAHPMMASARRAEQKTAA---TFAKTPCAWLPVDVPEAERALHEKILKQLKE 233 >gi|160899427|ref|YP_001565009.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1] gi|160365011|gb|ABX36624.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1] Length = 238 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 131/240 (54%), Gaps = 15/240 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + N DR+IE+G VE+++ T ++ GR + P+AL++HGIT Sbjct: 3 RQIILDTETTGLSADNGDRLIELGCVEMVNRKLTGNNLHLYFN-AGRDSHPDALRVHGIT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124 EFLKDKP F E W++ Q AE I HNA FD+GF+N EL+ N+ P+ +I Sbjct: 62 TEFLKDKPRFEHKVDEIWEYL--QGAELIIHNAPFDLGFLNKELELANRPPIRQCVSGVI 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL +A+ P RN L+SLC R + S R+ HGALLD+ LL+DVYI + G + Sbjct: 120 DTLVMAKEMFPGKRNSLDSLCDRLEVDNSGRTLHGALLDAELLADVYINLTRGQEALL-- 177 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA----IWDRY 240 E+ E V + L K +EL H+ + + K++ IW + Sbjct: 178 --MAEEPVQSEGGLVVAQVDLASF-KLRVVHANDQELAAHEDVMVQMDKSSGGKTIWRGF 234 >gi|149912883|ref|ZP_01901417.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b] gi|149813289|gb|EDM73115.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b] Length = 244 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 140/247 (56%), Gaps = 19/247 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTG D + DRI+EIGA+EL ++ T RTF ++ P GR EA ++HGI Sbjct: 1 MREIVLDTETTGFDPEQGDRIVEIGALELYNHMPTGRTFHHYINP-GRGMPQEAFEVHGI 59 Query: 66 TDEFL-------------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR 112 + L +DKP F + + F +F NA+ + HNA FD+ F+NAEL Sbjct: 60 GPDLLDAPRPPRPGEITLRDKPPFDHVANAFIEFVG--NAKLVIHNAAFDMKFLNAELGW 117 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + L + IDTL+IAR+K P S L++LC+R+ I + R+ HGALLDS +L++VY+ Sbjct: 118 LKLPLLPWEQAIDTLAIARQKFPGSPASLDALCRRFAIDNTARTLHGALLDSEILAEVYL 177 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +++ GG Q +F + +T R +PL RIT+ E H I+T+G Sbjct: 178 ELI-GGRQPDFALSAH-PVAQSGSAETDIGWRPKPRPQPLPPRITETEAAAHAAFIETMG 235 Query: 233 KNAIWDR 239 ++W + Sbjct: 236 DGSLWKK 242 >gi|294085203|ref|YP_003551963.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum marinum IMCC1322] gi|292664778|gb|ADE39879.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Candidatus Puniceispirillum marinum IMCC1322] Length = 255 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 132/260 (50%), Gaps = 32/260 (12%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTG++ + RIIEIG +ELL + T +++ P R+ A+K+HG+ Sbjct: 1 MREIALDTETTGINPRDGHRIIEIGCLELLHHLPTGNKLHIYINPE-REIDEGAVKVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T FL DKP F+ I EF F + HNA FD+GF+NAEL R+++ L R +D Sbjct: 60 TSAFLADKPLFADIVDEFLAFIGGDQ--MVIHNASFDMGFLNAELARLDRPVLPMDRAVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR+K P ++ +L++LC+R+ I HR HGAL+D+ LL+ VYI+++ GG Q G Sbjct: 118 TLMMARKKFPGAQANLDALCRRFEIDNGHRDLHGALIDADLLASVYIELL-GGKQPGLGL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRD-------------------------KPLFTRI-TKE 219 + + L +P+ T + E Sbjct: 177 DNGTGSGARSRAGPAGSAGSLGSAGWSGSDHGAETANGTGHFAMSETAIRPIRTHAPSPE 236 Query: 220 ELDEHDKTIQTLGKNAIWDR 239 E HD + + +N IW + Sbjct: 237 EQAAHDAFLDGM-ENPIWRQ 255 >gi|225075242|ref|ZP_03718441.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens NRL30031/H210] gi|224953417|gb|EEG34626.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens NRL30031/H210] Length = 245 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 133/245 (54%), Gaps = 15/245 (6%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R+I+ D ETTGL +N DR++E +E+++ T+ +++ P R EA K+HG+ Sbjct: 3 QRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGL 61 Query: 66 TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121 T E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 62 TIEVLEAKNAPPFAQVGKQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGC 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++ DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Sbjct: 120 KVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQ--- 176 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 F E E K+TV I+ KR + + +EL H+K + LG+ +W + Sbjct: 177 -FDLMGGEAEEEGEVKQTV--IAETKRTSQLKVVKANADELAAHEKYLDDLGEACVWRKA 233 Query: 241 ISSNQ 245 +S++ Sbjct: 234 ETSDE 238 >gi|33519691|ref|NP_878523.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia floridanus] gi|33517354|emb|CAD83739.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia floridanus] Length = 258 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 85/259 (32%), Positives = 131/259 (50%), Gaps = 24/259 (9%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 + N R +V D ETTG++ + RIIEIGAVE+++ TN F V+L PN R Sbjct: 1 MNINSNRYVVLDTETTGMNKFGVHYEGHRIIEIGAVEIINRRLTNNQFHVYLNPN-RSVD 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 EA +HGI+D+FL D+P F I ++F F + + + HNA FD+GF+N EL I + Sbjct: 60 SEAFAIHGISDQFLVDQPCFLDIANDFLQFI--RGSTLVIHNASFDLGFLNFELHNIYLN 117 Query: 117 ---PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +ID+L +AR+ P RN L++LC+RY I S R H AL+D+ LL+ V++ Sbjct: 118 SRTVESYCTVIDSLKLARKIFPGQRNSLDALCERYCIKNSKRILHNALIDAQLLAYVFLV 177 Query: 174 MMVGGSQINFGFKTNED---------RFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 M G ++I F + + + + N ++ T E EH Sbjct: 178 MTGGQTRIQFMDMLDNSDTNILNNTITHDNKFELCLNNSVCTEKKSLKILYATSIEKLEH 237 Query: 225 DKTIQTLGK----NAIWDR 239 +K + + K +W + Sbjct: 238 EKYLDFVMKASNNQCLWRK 256 >gi|254468292|ref|ZP_05081698.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13] gi|207087102|gb|EDZ64385.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13] Length = 219 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 89/227 (39%), Positives = 129/227 (56%), Gaps = 14/227 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGLD + RIIEI AVE+++ TN F V++ P R+ A ++HG+ Sbjct: 1 MRQIFLDTETTGLDPAQGHRIIEIAAVEMINRQVTNNQFHVYINPE-REIDEAAQEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII- 124 T EFL DKP F SI +F F ++E I HNA FD+GF+N EL RI K ++ + Sbjct: 60 TLEFLSDKPGFESISEKFISFIA--DSELIIHNAPFDIGFLNMELGRIKKGVVEDYAEVI 117 Query: 125 -DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 D+L +AR P RN+L++LC+ YG+ S R+ HGALLDS LL++V+I M G + Sbjct: 118 TDSLVMARELRPGQRNNLDALCRHYGVDNSERNLHGALLDSLLLAEVFIGMTRGQEALEI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 F E +K + +K ++EEL+ H + ++ Sbjct: 178 DFNNQEKLSIDFDKDIL--------NKLKVVSASQEELELHQEYLKK 216 >gi|325983345|ref|YP_004295747.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] gi|325532864|gb|ADZ27585.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] Length = 245 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 94/241 (39%), Positives = 129/241 (53%), Gaps = 18/241 (7%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGL+ K RI+EI AVEL + T F +L P R++ AL++HG+ Sbjct: 1 MRQIVLDTETTGLECKLGHRIVEIAAVELCNRQFTGSHFHYYLNPE-RESDEGALQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T EFL+DK F I EF +F + +AE I HNA FDVGF+N EL N LD S+I Sbjct: 60 TMEFLQDKAKFYEISREFLNFIS--DAELIIHNAPFDVGFLNHELGLCNLKALDNYCSQI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL +A+ HP RN+L++LC+RY I S R HGALLD+ LL++VY+ M G + Sbjct: 118 TDTLKLAKELHPGKRNNLDALCERYNIDNSKRKLHGALLDAELLAEVYLAMTRGQESLLI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK----NAIWDR 239 E P+ L T EE H ++ + + +W+ Sbjct: 178 ELDYVES--------VQPSQIDLDNSDLRIIAATAEEKARHCGILEEIARASDNKCLWNN 229 Query: 240 Y 240 + Sbjct: 230 F 230 >gi|34496712|ref|NP_900927.1| DNA-directed DNA polymerase subunit epsilon [Chromobacterium violaceum ATCC 12472] gi|34102567|gb|AAQ58932.1| DNA-directed DNA polymerase, epsilon chain [Chromobacterium violaceum ATCC 12472] Length = 239 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 126/246 (51%), Gaps = 17/246 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTGLD + RIIE +E++ T + +++ P R+ PEA ++HGI Sbjct: 1 MRQIILDTETTGLDPQQGHRIIEFAGLEMVGRKLTGKHLHLYIHPE-REIDPEAQRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 + EFL KP F+ + E DF ++AE I HNA FDVGF+NAE + +P+ + + Sbjct: 60 SLEFLAGKPVFAKVAHEIADFL--RDAELIIHNAPFDVGFLNAEFAKAGIEPVGKLCASV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL+ AR P RN L++LC R+ I S+R+ HGAL+D LLS+VY+ M G + Sbjct: 118 IDTLAEARDMFPGKRNSLDALCDRFEIDRSNRTLHGALVDCELLSEVYLWMTRGQESLAM 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN----AIWDR 239 + E +R ++ E EH + L K +W Sbjct: 178 DIEV-------ELPGGDAGAIQFERKPLKVLAASEAEEAEHQAYLDVLDKAVKGICVWRG 230 Query: 240 YISSNQ 245 S Q Sbjct: 231 LASPAQ 236 >gi|319944001|ref|ZP_08018281.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia mirabilis ATCC 51599] gi|319742762|gb|EFV95169.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia mirabilis ATCC 51599] Length = 238 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 122/230 (53%), Gaps = 9/230 (3%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++V D ETTGL++ K RIIEIG VE+++ T +++ P R+ A +HG+T Sbjct: 6 RQVVLDTETTGLEASKGHRIIEIGCVEMVNRRITRNNLHLYINPE-REVDEGAAAVHGMT 64 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-- 124 + L+DKP+F+ I +F DF + AE I HNA FD GF++AEL R+ + Sbjct: 65 WDDLRDKPTFAQIVDQFLDFC--RGAEIIIHNASFDTGFLDAELARLGRGTFASHVACVT 122 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 D+L++AR ++P RN+L++LC+R + HR+ HGALLDS LL++VY+ M G + G Sbjct: 123 DSLAMARERYPGKRNNLDALCERLMVPNKHRTLHGALLDSELLAEVYLGMTRGQGSFDIG 182 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 +D T E H++ + L K Sbjct: 183 SSAEDDEGGAVADAGGGRWPP---TGLRVRLATDAERQLHEQGLVALEKQ 229 >gi|240142395|ref|YP_002966905.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] gi|240012339|gb|ACS43564.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] Length = 248 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 125/235 (53%), Gaps = 6/235 (2%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D ETTG D K DRIIE+G VE+++ +T R F ++ P R +A +HGI Sbjct: 5 QRIVVGDTETTGTDPKGGDRIIEVGFVEIVNGFRTGRHFHSYVNPE-RPVPADATAIHGI 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE LKD P F+++ ++ +F + A + HNA FD+GF + E ++ LD SR+ D Sbjct: 64 TDEMLKDAPVFAAVAADIVEFIADSPAIF--HNAPFDLGFFDLEFGLLSLPSLDRSRVTD 121 Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV-GGSQINF 183 +L AR+ P ++ L++LC RYGI + R+KHGAL+DS LL+DV++ M GG F Sbjct: 122 SLVHARKLLPAGAKAGLDALCNRYGIDRTRRTKHGALMDSELLADVWLAMTGTGGLAHGF 181 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 G + + + + L + E + H + T +W Sbjct: 182 GPAAQAEESAAVGRVPLRRHAPEVAASLLRLVPSDHEAERHSSFVATQLVKPLWK 236 >gi|15616860|ref|NP_240073.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11132278|sp|P57337|DPO3E_BUCAI RecName: Full=DNA polymerase III subunit epsilon gi|25299956|pir||G84958 DNA-directed DNA polymerase (EC 2.7.7.7) epsilon chain [imported] - Buchnera sp. (strain APS) gi|10038924|dbj|BAB12959.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 237 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 97/244 (39%), Positives = 134/244 (54%), Gaps = 16/244 (6%) Query: 4 KNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 N+ R I+ D ETTG++ N RIIEIGAVE++D T F V++ P GR Sbjct: 1 MNRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQP-GRSIESG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ALK+HGIT++FL DKP F I F ++ +N+ + HNA FDVGFIN EL+ +NK Sbjct: 60 ALKVHGITNKFLLDKPIFKDIADSFLNYI--KNSILVIHNASFDVGFINQELEILNKKIK 117 Query: 119 --DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 IIDTL IAR P +N L++LC RY I SHR+ H A++DS+LL +Y+ M Sbjct: 118 INTFCSIIDTLKIARELFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTG 177 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-- 234 G + N FK+ KK + LK + T +E D H+K +Q + Sbjct: 178 GQDSLFSDNTINYKENFKKLKKNIQ----LKNNTLRILHPTLKENDLHEKYLQYMKDKST 233 Query: 235 AIWD 238 +W+ Sbjct: 234 CLWN 237 >gi|261380159|ref|ZP_05984732.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703] gi|284796997|gb|EFC52344.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703] Length = 245 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 132/245 (53%), Gaps = 15/245 (6%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R+I+ D ETTGL +N DR++E +E+++ T+ +++ P R EA K+HG+ Sbjct: 3 QRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGL 61 Query: 66 TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121 T E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 62 TIEVLEAKNAPPFAQVGKQIADFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGC 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++ DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Sbjct: 120 KVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQ--- 176 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 F E E K+TV I+ KR + + +EL H+K + LG+ +W + Sbjct: 177 -FDLMGGEAEEEGEVKQTV--IAETKRTSQLKVIKANADELAAHEKYLDDLGEACVWRKA 233 Query: 241 ISSNQ 245 + ++ Sbjct: 234 ETPDE 238 >gi|255320390|ref|ZP_05361574.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens SK82] gi|262379328|ref|ZP_06072484.1| ribonuclease HI [Acinetobacter radioresistens SH164] gi|255302585|gb|EET81818.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens SK82] gi|262298785|gb|EEY86698.1| ribonuclease HI [Acinetobacter radioresistens SH164] Length = 455 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 130/235 (55%), Gaps = 16/235 (6%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K +++ +HGIT Sbjct: 228 RQLILDTETTGFYFQDGDRIIEVGAIEMVNRKLTGSSIHIYINPE--KPVGDSVDIHGIT 285 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 DEFL+DKP ++ I +++ + AE IAHNA FD+ F++ E +R L + D Sbjct: 286 DEFLQDKPRYAEIAEVLFNYL--KGAEIIAHNASFDMNFLDMEFKRAGFPALSEVCEVTD 343 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G + Sbjct: 344 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDA 403 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ----TLGKNAI 236 + + + + V N+ L + EEL H++ +Q G+ + Sbjct: 404 LSQSEISQSQASRQVINVDL------PVIVPSPEELAAHEEWVQHYQEKNGEPCL 452 >gi|260557363|ref|ZP_05829578.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606] gi|260408989|gb|EEX02292.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606] Length = 459 Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + D Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450 >gi|50084331|ref|YP_045841.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. ADP1] gi|49530307|emb|CAG68019.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III ,epsilon subunit, 3-5 exonucleolytic proofreading function] [Acinetobacter sp. ADP1] Length = 450 Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 131/225 (58%), Gaps = 12/225 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K +++ +HGIT Sbjct: 223 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVDVHGIT 280 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R L + D Sbjct: 281 DEFLLDKPKYAEIAEPLFEYL--KGAEIIAHNASFDMNFLDMEFKRAGLPTLSEVCEVTD 338 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 339 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 396 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 R + K I + D P R + EL++H++ +++ Sbjct: 397 DALSQREQNQRKGQRARI---EADLP-VIRPSANELEKHNEWVKS 437 >gi|261400727|ref|ZP_05986852.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC 23970] gi|269209492|gb|EEZ75947.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC 23970] Length = 244 Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 129/243 (53%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA K+HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAAKVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 ED + + ++ + + K + + EL H+K + LG++ IW + Sbjct: 180 ----MGEDEKEEPAAQPAVSVEMKRSAKLKVVKADETELAAHEKYLDGLGESCIWRKEAV 235 Query: 243 SNQ 245 ++ Sbjct: 236 PSE 238 >gi|239503330|ref|ZP_04662640.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB900] Length = 459 Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + D Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450 >gi|169796679|ref|YP_001714472.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter baumannii AYE] gi|184157414|ref|YP_001845753.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU] gi|213156097|ref|YP_002318517.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii AB0057] gi|215484167|ref|YP_002326392.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB307-0294] gi|301344775|ref|ZP_07225516.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB056] gi|301510946|ref|ZP_07236183.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB058] gi|169149606|emb|CAM87496.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III ,epsilon subunit, 3-5 exonucleolytic proofreading function] [Acinetobacter baumannii AYE] gi|183209008|gb|ACC56406.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU] gi|213055257|gb|ACJ40159.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii AB0057] gi|213985858|gb|ACJ56157.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB307-0294] gi|322507294|gb|ADX02748.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 1656-2] gi|323517313|gb|ADX91694.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii TCDC-AB0715] Length = 459 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + D Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450 >gi|169633080|ref|YP_001706816.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter baumannii SDF] gi|169151872|emb|CAP00707.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III ,epsilon subunit, 3-5 exonucleolytic proofreading function] [Acinetobacter baumannii] Length = 459 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + D Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450 >gi|126641104|ref|YP_001084088.1| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978] Length = 459 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + D Sbjct: 290 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 406 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 450 >gi|332852350|ref|ZP_08434135.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013150] gi|332870148|ref|ZP_08439060.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013113] gi|332875093|ref|ZP_08442929.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6014059] gi|332729293|gb|EGJ60634.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013150] gi|332732415|gb|EGJ63671.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6013113] gi|332736710|gb|EGJ67701.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii 6014059] Length = 497 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 327 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + D Sbjct: 328 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 385 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 386 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 443 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 444 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 488 >gi|255065954|ref|ZP_05317809.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256] gi|255049865|gb|EET45329.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256] Length = 255 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 15/243 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL ++ DR++E +E+++ T +++ P R EA K+HG+T Sbjct: 19 RQIILDTETTGLYAEGGDRLVEFAGLEMINRQITGNNLHLYVHPE-RDMPEEAAKVHGLT 77 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF ++AE I HNAKFDVGF+N E +R+ ++ Sbjct: 78 IEVLEEKNAPPFAEVGRQIADFI--RDAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCT 135 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R + S R HGAL+D LL +VY+ M Sbjct: 136 VTDTLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAMTRQQ---- 191 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F E +E K + I+ KR + EEL H++ + LG+ +W + Sbjct: 192 FDLMGGEKEEDEEVKPVI--IAETKRPAHLKVIKANAEELAAHEQYLDGLGEACLWRKAE 249 Query: 242 SSN 244 ++ Sbjct: 250 TAG 252 >gi|193076772|gb|ABO11486.2| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978] Length = 497 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 327 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + D Sbjct: 328 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 385 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 386 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 443 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 444 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 488 >gi|319638369|ref|ZP_07993131.1| DNA polymerase subunit III [Neisseria mucosa C102] gi|317400118|gb|EFV80777.1| DNA polymerase subunit III [Neisseria mucosa C102] Length = 245 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 15/245 (6%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R+I+ D ETTGL +N DR++E +E+++ T+ +++ P R EA K+HG+ Sbjct: 3 QRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPE-RDMPEEAAKVHGL 61 Query: 66 TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121 T E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 62 TIEVLEAKNAPPFAQVGKQIADFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGC 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++ DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Sbjct: 120 KVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQ--- 176 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 F E E K T+ I+ KR + + +EL H+K + LG+ +W + Sbjct: 177 -FDLMGGEAEEEGEVKPTI--IAETKRTSQLKVIKADADELAAHEKYLDDLGEACVWRKA 233 Query: 241 ISSNQ 245 + ++ Sbjct: 234 ETPDE 238 >gi|262368670|ref|ZP_06061999.1| ribonuclease HI [Acinetobacter johnsonii SH046] gi|262316348|gb|EEY97386.1| ribonuclease HI [Acinetobacter johnsonii SH046] Length = 474 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 128/224 (57%), Gaps = 12/224 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P +K ++ +HGI+ Sbjct: 247 RQLILDTETTGFYYQDGDRIIEVGAIEMVNRKLTGSSIHIYINP--KKPVGDSENVHGIS 304 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 D+FLKDKP + I + + + AE IAHNA FD+ F++ E +R L + D Sbjct: 305 DDFLKDKPLYQEIADTLFAYL--KGAEIIAHNASFDMNFLDMEFKRAGFVALSEVCAVTD 362 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M G + Sbjct: 363 TLAMAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILADVYLAMTGGQVSFDMDA 422 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 ++ ++ + ++ +I L + + EEL+ H+ ++ Sbjct: 423 LSHSEQQNGQSQRQALDIELA------VIQPSAEELEAHETWVK 460 >gi|226952576|ref|ZP_03823040.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. ATCC 27244] gi|226836656|gb|EEH69039.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. ATCC 27244] Length = 452 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 130/229 (56%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K +++ +HGIT Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVDVHGIT 282 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 DEFL+DKP ++ I + + + AE IAHNA FD+ F++ E +R+ L + D Sbjct: 283 DEFLQDKPKYAEIADALFAYL--KGAEIIAHNATFDMNFLDMEFKRVGLPLLSEVCEVTD 340 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M G Q++F Sbjct: 341 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGG--QVSFDI 398 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + K T + + R ++ EL+EH+ ++ + Sbjct: 399 DALSQHEQNQNKTTRQRVQID----LAVIRPSEHELNEHETWVKQFEEK 443 >gi|309378712|emb|CBX22662.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 244 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 128/243 (52%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 ED + + + + + K + + EL H+K + LG++ IW + Sbjct: 180 ----MGEDEKEEPAAQPAVSAEMKRSAKLKVVKADEAELAAHEKYLDGLGESCIWRKEAV 235 Query: 243 SNQ 245 ++ Sbjct: 236 PSE 238 >gi|301596826|ref|ZP_07241834.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB059] Length = 438 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K +++++HGIT Sbjct: 211 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVQVHGIT 268 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 DEFL DKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + D Sbjct: 269 DEFLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 326 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 327 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 384 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T + + + + EEL+ H+ ++ K Sbjct: 385 DALSQSESDQQKTTKARVQI----ELPVIYPSDEELNIHETWVKEFEKK 429 >gi|32490818|ref|NP_871072.1| hypothetical protein WGLp069 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166024|dbj|BAC24215.1| dnaQ [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 246 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 92/243 (37%), Positives = 134/243 (55%), Gaps = 15/243 (6%) Query: 2 IRKNKMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 ++ N R+IV D ETTG++ RIIEIGA+E+++ T R F +L P+ R Sbjct: 1 MKINTERQIVLDTETTGMNKNGPHYYGHRIIEIGAIEMINRRLTGRCFHTYLKPD-RLVE 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 EA K+HGI+DEFL +P+F I +F +F + +E I HN+ FD+GFIN E+Q NK+ Sbjct: 60 IEAFKIHGISDEFLFFQPTFEEIMEKFINFI--KGSELIIHNSVFDIGFINNEIQLCNKN 117 Query: 117 PLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +IDTL +AR P RN+L++L RYGI + R HGALLD+ +LS+VY+ Sbjct: 118 LNNINYYCSVIDTLKLARNIFPGKRNNLDALSDRYGIDTTKRILHGALLDAEILSNVYLL 177 Query: 174 MMVGGSQINFG----FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 M G INF + N K KP+ +EE+ EH K ++ Sbjct: 178 MTGGQIPINFSKKKNNNFINKKIKNNFNNFKKNKKYNKIIKPIVIYANEEEIHEHKKFMK 237 Query: 230 TLG 232 ++ Sbjct: 238 SIN 240 >gi|254796828|ref|YP_003081665.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str. Illinois] gi|254590057|gb|ACT69419.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str. Illinois] Length = 228 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 97/238 (40%), Positives = 141/238 (59%), Gaps = 17/238 (7%) Query: 6 KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + RK++ D ETTGLD KN DR+IEIG VE++D+ T F ++L P R+ S EA ++HG Sbjct: 3 QRRKVILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPE-REISKEATRVHG 61 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRI 123 IT E L D P F I +F F +E +AHNA FD+ F+N+EL R + + + Sbjct: 62 ITFEQLADSPKFIDIADDFLQFIGS--SEIVAHNASFDIRFLNSELIRARQRRLIKLENV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL++AR+ P S L++LC+R+ I++ R HGALLD+ LL+ VYI++ GSQ++ Sbjct: 120 IDTLAMARKIFPGSPASLDALCRRFRISLEQREFHGALLDAQLLARVYIEL-SKGSQVSM 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F E EKK +R+K + IT EE H + I+ L K+ +WD + Sbjct: 179 SF--LEGSSASSEKKM-----FKEREKLI---ITPEESLAHSELIKRL-KDPLWDEIL 225 >gi|260550748|ref|ZP_05824956.1| ribonuclease HI [Acinetobacter sp. RUH2624] gi|260406254|gb|EEW99738.1| ribonuclease HI [Acinetobacter sp. RUH2624] Length = 459 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K E+ +HGI+ Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGESENIHGIS 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 D+FLKDKP ++ I +++ + AE IAHNA FD+ F++ E +R+ L + D Sbjct: 290 DDFLKDKPVYADIADTLFEYL--KGAEIIAHNATFDMNFLDMEFRRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDM 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 ++K T I + + EEL+ H+ ++ K Sbjct: 406 DALSQSESDQQKTTKARIQID----LPVIYPSDEELNIHETWVKEFEKK 450 >gi|239815139|ref|YP_002944049.1| DNA polymerase III, subunit epsilon [Variovorax paradoxus S110] gi|239801716|gb|ACS18783.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus S110] Length = 235 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 89/231 (38%), Positives = 137/231 (59%), Gaps = 11/231 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++N DRIIE+G VEL T ++ P R++ +ALK+HG+T Sbjct: 3 RQIVLDTETTGLSAENGDRIIELGCVELFARKLTGNDLHIYFNPE-RESHEDALKVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124 +FL+DKP F+++ ++ ++ + AE I HNA FDVGF+N EL+ PL + Sbjct: 62 TDFLRDKPKFATLANDIVEYL--RGAELIIHNAAFDVGFLNKELELAGLPPLRSFVGEVT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++A++ +P RN L++LC R+G+ S+R+ HGA LD+ LL+DVYI + G + Sbjct: 120 DTLAMAKQVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLID 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 +NE + TV I L + D P ++EL H+ + L K++ Sbjct: 180 VASNEPA----QGTTVVAIDLSQFDLP-VIMAAEQELAAHEAVLSQLDKSS 225 >gi|163797056|ref|ZP_02191011.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199] gi|159177572|gb|EDP62125.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199] Length = 230 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 136/232 (58%), Gaps = 6/232 (2%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IV D ETTGLD DRI+EIG VEL+++ T RT ++ P R A ++HG+ Sbjct: 1 MREIVLDTETTGLDPDTGDRIVEIGCVELINHVPTGRTLHHYINPE-RDMPLGAFEVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + EFL P F ++ E +F +A + HNA FD+ FINAEL+R+N+ + S+ +D Sbjct: 60 SSEFLSAYPVFGALADEILEFLG--DAVLVIHNASFDMKFINAELRRLNRPEIPMSQALD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +ARRK+P ++ L++LC+R+ I HR+ HGALLD+ LL+ VY++++ GG Q + Sbjct: 118 TVQLARRKYPGAQASLDALCRRFEIDNGHRTLHGALLDADLLAAVYLELI-GGRQPDLAL 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + +T + +P + +EL H ++++ K+ IW Sbjct: 177 AAQKPSDESPGSRTAEHREARPYREPRPHAPSADELAAHRTFLESI-KDPIW 227 >gi|313668102|ref|YP_004048386.1| DNA polymerase III, epsilon chain [Neisseria lactamica ST-640] gi|313005564|emb|CBN87000.1| DNA polymerase III, epsilon chain [Neisseria lactamica 020-06] Length = 244 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 128/243 (52%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 ED + + + + + K + + EL H+K + LG++ IW + Sbjct: 180 ----MGEDEKEEPAAQPAVSAEMKRSAKLKVVKADEAELAAHEKYLDGLGESCIWRKEAV 235 Query: 243 SNQ 245 ++ Sbjct: 236 PSE 238 >gi|332967672|gb|EGK06783.1| DNA-directed DNA polymerase III epsilon subunit [Kingella kingae ATCC 23330] Length = 252 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 78/254 (30%), Positives = 132/254 (51%), Gaps = 14/254 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 + + +R+I+ D ETTG + DR+IE +E+++ T +++ P R +P Sbjct: 1 MTETPIRQIILDTETTGFEHSAAENPDRMIEFAGLEMVNRQFTKNNLHLYIHPQ-RDINP 59 Query: 58 EALKLHGITDEFLK--DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 +A+ +HGIT E L+ + P F+ + + +DF + AE I HNAKFDVGF++AE R+ Sbjct: 60 DAIAVHGITLEKLESENAPVFAEVAQQIFDFI--KGAELIIHNAKFDVGFLDAEFARVGL 117 Query: 116 DPLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++DTL +AR ++P +N L++LC R + S R HGAL+D LL +VY+ M Sbjct: 118 PKVKTICTVVDTLEMARDRYPGQKNSLDALCNRLDVDRSRRVLHGALIDCELLGEVYLAM 177 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK- 233 G ++ F ++ L + + + EEL EH++ + L K Sbjct: 178 TRGQFSLDAAFASDVAESSASPVIATTATLLPRPEYLKVQAASPEELAEHEEYLNQLDKA 237 Query: 234 ---NAIWDRYISSN 244 + I+ + S N Sbjct: 238 VDGSCIYRQTDSVN 251 >gi|124267443|ref|YP_001021447.1| DNA polymerase III subunit epsilon [Methylibium petroleiphilum PM1] gi|124260218|gb|ABM95212.1| DNA polymerase III, epsilon subunit [Methylibium petroleiphilum PM1] Length = 234 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 83/238 (34%), Positives = 124/238 (52%), Gaps = 16/238 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I D ETTGL +N DRIIEIG VE+L + +L P R+N +A+K+HG+T Sbjct: 3 RQIFLDTETTGLSPENGDRIIEIGCVEMLSRRLSGNNRHFYLNPE-RRNHEDAVKIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124 DEFL DKP F+ + E ++ AE I HNA FDVGF++AEL+R+ + + Sbjct: 62 DEFLADKPKFAVVADELMEYLA--GAEIIIHNAAFDVGFLDAELKRLQRPRFAEQVGAVT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 D+L++AR P N L++LCKR + + R+ HGALLD+ LL++VYI+M G + + Sbjct: 120 DSLTMAREMFPGKSNSLDALCKRLEVDNASRTLHGALLDAGLLAEVYIRMTRGQNSLVID 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAIWD 238 + +L + +E H+ + L G +W Sbjct: 180 AGAASGGAIAVADIDLRQFAL------PVIEPSDDERQAHEAVLAELDKVSGGKTLWR 231 >gi|319794398|ref|YP_004156038.1| DNA polymerase iii, epsilon subunit [Variovorax paradoxus EPS] gi|315596861|gb|ADU37927.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus EPS] Length = 240 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 87/231 (37%), Positives = 136/231 (58%), Gaps = 11/231 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTGL ++N DR+IE+G VEL T ++ P R++ +ALK+HG+T Sbjct: 3 RQIVLDTETTGLSAENGDRVIELGCVELFARKLTGNDLHIYFNPE-RESHEDALKVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RII 124 +FL+DKP F+++ ++ ++ + AE I HNA FDVGF+N E +R PL + Sbjct: 62 TDFLRDKPKFATLANDIIEYL--RGAELIIHNAAFDVGFLNKEFERAGLPPLRTFVAEVT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++A+ +P RN L++LC R+G+ S+R+ HGA LD+ LL+DVYI + G + Sbjct: 120 DTLAMAKLVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLID 179 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 +NE + TV I L + + P ++EL H+ + L K++ Sbjct: 180 VASNEPA----QGTTVVAIDLSQFELP-VIAAGEQELAAHEAVLSQLDKSS 225 >gi|294649872|ref|ZP_06727272.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter haemolyticus ATCC 19194] gi|292824246|gb|EFF83049.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter haemolyticus ATCC 19194] Length = 452 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 129/229 (56%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K +++ +HGIT Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINPE--KPVGDSVDVHGIT 282 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 DEFL+DKP ++ I + + + AE IAHNA FD+ F++ E +R+ L + D Sbjct: 283 DEFLQDKPKYAEIADALFAYL--KGAEIIAHNATFDMNFLDMEFKRVGLPLLSEVCEVTD 340 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M G Q++F Sbjct: 341 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGG--QVSFDI 398 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + K T + + ++ EL+EH+ ++ + Sbjct: 399 DALSQHEQNQNKTTRQRVQID----LAVILPSEHELNEHETWVKQFEEK 443 >gi|298369358|ref|ZP_06980676.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298283361|gb|EFI24848.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 240 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 15/243 (6%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL ++ DR++E +E+++ T+ +++ P R EA K+HG+T Sbjct: 4 RQIILDTETTGLYAEGGDRLVEFAGLEMINRQMTDNNLHLYIHPE-RDMPEEAAKVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF ++AE I HNAKFD+GF+N E +R+ ++ Sbjct: 63 IEVLEEKNAPPFAEVGRQIADFI--RDAELIIHNAKFDIGFLNMEFRRMGLPSIEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R + S R HGAL+D LL +VY+ M Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAMTRQQ---- 176 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F E +E K + I+ KR + EEL H++ + LG+ +W + Sbjct: 177 FDLMGGEKEEDEEVKPVI--IAETKRPAHLKVIKANAEELAAHEQYLDGLGEACLWRKAE 234 Query: 242 SSN 244 ++ Sbjct: 235 TAG 237 >gi|261377592|ref|ZP_05982165.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685] gi|269146340|gb|EEZ72758.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685] Length = 244 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 17/250 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MI+ R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA Sbjct: 1 MIK----RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYIHPE-RDMPEEA 55 Query: 60 LKLHGITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 ++HG+T E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ Sbjct: 56 ARVHGLTIEVLEGKNAPPFARVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPT 113 Query: 118 LDP--SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ I DTLS+AR P + L++LC R+ + S R HGAL+D LL +VY+ M Sbjct: 114 VEELGCTITDTLSMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMT 173 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + E K V + + K + + EL H++ + LG++ Sbjct: 174 RQQFDL-----MGEAEEEGPAAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGESC 228 Query: 236 IWDRYISSNQ 245 IW + ++ Sbjct: 229 IWRKEAVPSE 238 >gi|145579465|pdb|2GUI|A Chain A, Structure And Function Of Cyclized Versions Of The Proofread Exonuclease Subunit Of E. Coli Dna Polymerase Iii Length = 194 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 76/183 (41%), Positives = 113/183 (61%), Gaps = 11/183 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 QIN 182 + Sbjct: 187 SMA 189 >gi|160872285|ref|ZP_02062417.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli] gi|159121084|gb|EDP46422.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli] Length = 235 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 94/241 (39%), Positives = 132/241 (54%), Gaps = 16/241 (6%) Query: 7 MRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I+ D ETTG D + RIIEIG +EL+D T R F +L P GR + P A +HG+ Sbjct: 1 MRQIILDTETTGRDINNGHRIIEIGCLELIDRQLTKRQFHCYLNP-GRDSDPGAFAIHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL---QRINKDPLDPSR 122 + EFL DKP F++I E +F ++++ I HNA FD+ F+ EL ++ K D + Sbjct: 60 STEFLMDKPVFTTIADELLNFI--KDSQLIIHNAPFDLAFLEYELTLTKKKYKKMTDYCQ 117 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I+D+L +AR+ HP RN L++LCKRY I S R KHGALLD+ LL+ VY+ M G + + Sbjct: 118 ILDSLLLARQLHPGQRNSLDALCKRYNIDHSKRDKHGALLDAELLARVYLAMTGGQTHLF 177 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIWDR 239 K + +KKT +L T EEL H + +L W Sbjct: 178 NEPKPLTIQTHARQKKTTEATTL------PIIYATCEELTAHKNYLNHIYSLSGQCKWLH 231 Query: 240 Y 240 Y Sbjct: 232 Y 232 >gi|297250280|ref|ZP_06863987.2| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC 43768] gi|296839296|gb|EFH23234.1| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC 43768] Length = 253 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 13/238 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+ Sbjct: 12 QRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGL 70 Query: 66 TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121 T E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 71 TIEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGC 128 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q Sbjct: 129 TVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQF 186 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 + E+ K E K V + + K R + EL EH + + LG++ IW + Sbjct: 187 DLMGAVAEE---KMETKPVAHTETKRSGKLKVIRADENELAEHGQYLDGLGESCIWRK 241 >gi|261364618|ref|ZP_05977501.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996] gi|288567207|gb|EFC88767.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996] Length = 239 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 82/242 (33%), Positives = 126/242 (52%), Gaps = 12/242 (4%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL ++N DR++E +E+++ T R +++ P R EA ++HG+T Sbjct: 3 RQIILDTETTGLYAENGDRLVEFAGLEMVNRQMTGRFLHLYVHPQ-RDMPEEAARVHGLT 61 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L K+ P F+ + E +F + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 62 IDVLEEKNAPPFAKVGQEISEFI--RGAELIIHNAKFDVGFLNMEFRRMGLPSVEELGCE 119 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I DTL++AR P + L++LC R I S R HGAL+D LL +VY+ M Sbjct: 120 ITDTLAMAREMFPGQKASLDALCNRLSIDRSKRVLHGALIDCELLGEVYLAMTRQQ---- 175 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 F E +E K V + + EEL+EH+K + LG+ IW + + Sbjct: 176 FDLMGGESEEETKEDKPVIIAETKRSSSLKVIKANSEELEEHEKYLDALGEPCIWRQAAA 235 Query: 243 SN 244 Sbjct: 236 GE 237 >gi|319941413|ref|ZP_08015741.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B] gi|319805033|gb|EFW01863.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B] Length = 246 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 129/233 (55%), Gaps = 19/233 (8%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDY--SKTNRT-FQVFLCPNGRKNSPEALKLH 63 R I D ETTGLD++N DRIIEIG V + T+ Q+F+ P R+ EA+ +H Sbjct: 6 RLITLDTETTGLDAQNGDRIIEIGCVAIEGRMMRSTDEHHLQIFVNPE-REVPEEAVAIH 64 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL-DPSR 122 GIT E+L+DKP F+ I +F DF + + + HNA FD GF++ EL R + + D + Sbjct: 65 GITTEYLQDKPKFAEIADKFIDFV--KGSTLVIHNAAFDTGFLDMELGRCGRGKISDYCQ 122 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +IDT+ +A++ P L+SLC+ Y I S+R+ HGALLD+ LL++VY+ + G + Sbjct: 123 VIDTVKLAKKLLPGRAVSLDSLCRYYEIDNSNRTLHGALLDAELLAEVYLSLSRGQDTLT 182 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 E+ +P + D + + + EEL EH++ + K A Sbjct: 183 L---------VNEDIDNLPPMPAF--DASIVIKASPEELAEHERILDIAEKKA 224 >gi|295698439|ref|YP_003603094.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola USDA] gi|291157346|gb|ADD79791.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola USDA] Length = 249 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 96/244 (39%), Positives = 135/244 (55%), Gaps = 17/244 (6%) Query: 8 RKIVFDIETTGLDS-----KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 RKI+ D ETTG+ S + IIEIGAVE+++ T F V++ P R P+A ++ Sbjct: 7 RKIILDTETTGMSSSGHPYEGHNIIEIGAVEMINRELTGNLFHVYINPK-RSVDPKAFEI 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP---LD 119 H I+D FLKDKP+FS I +F DF +N+E I HNA FDVGFIN EL RI Sbjct: 66 HKISDNFLKDKPTFSEIVDDFVDFI--RNSELIIHNASFDVGFINHELSRIEYSFCSIKK 123 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 RI DTL IAR P +N L++LC RY I S RS H A+LD+ +LS++Y K+M GG Sbjct: 124 ICRITDTLKIARSLFPGKKNSLDALCDRYHIDRSKRSVHSAILDAKILSEIY-KLMTGG- 181 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI----QTLGKNA 235 QI+F F + ++ + + + L +E H+ + + +GK Sbjct: 182 QISFNFDHDLEKKENFLNQYYFQRKRKRTRESLVIYANSKEQYCHEFILNTIEKKIGKKT 241 Query: 236 IWDR 239 +W + Sbjct: 242 LWRK 245 >gi|88606785|ref|YP_505310.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ] gi|88597848|gb|ABD43318.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ] Length = 244 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 85/234 (36%), Positives = 130/234 (55%), Gaps = 10/234 (4%) Query: 6 KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K+R+IV D ETTGLD+ DRIIEIG VEL+DY T R F ++ P R S A ++HG Sbjct: 2 KVREIVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPE-RDISVAATRVHG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT E L P F+ + E DF Q++ + HNA+FD+ F+ E++R++ + I+ Sbjct: 61 ITRESLIGMPKFAEVADELLDFL--QDSALVIHNARFDMRFLEVEIERLSNKRAITNTIV 118 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-GSQINF 183 DTL +AR+K P L++LCKR+ I+ R HGAL D+ LL+ VY++++ ++ F Sbjct: 119 DTLEMARKKFPGMPASLDALCKRFNISTQERKFHGALKDATLLARVYVELLEALQRRLVF 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + ++ + + R L + EE H +T+ + KN IW Sbjct: 179 SQEGDDSKQVSVIHDKAKRVVYPARTFTL----SSEEKRLHRQTVSKM-KNPIW 227 >gi|88608300|ref|YP_506355.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str. Miyayama] gi|88600469|gb|ABD45937.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str. Miyayama] Length = 228 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 99/238 (41%), Positives = 143/238 (60%), Gaps = 17/238 (7%) Query: 6 KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + RK++ D ETTGLD KN DR+IEIG VE++D+ T F ++L P R+ S EA ++HG Sbjct: 3 QRRKVILDTETTGLDMKNGDRVIEIGCVEVVDFRITGEIFHIYLNPE-REISKEATRVHG 61 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRI 123 IT E L D P F I +F F + +E +AHNA FD+ F+N+EL R + + + Sbjct: 62 ITFEQLADSPKFIDIADDFLKFIDS--SEIVAHNASFDIRFLNSELIRARQRRLIKLENV 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL++AR+ P S L++LC+R+ I++ R HGALLD+ LL+ VYI++ GSQ++ Sbjct: 120 IDTLAMARKIFPGSPASLDALCRRFRISLEQRELHGALLDAQLLARVYIEL-SKGSQVSM 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 F E EKK +R+K + IT EE EH + I+ L KN +WD + Sbjct: 179 SF--LEGSSVSSEKKM-----FKEREKLI---ITPEESLEHSELIRRL-KNPLWDEIL 225 >gi|325142705|gb|EGC65085.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 961-5945] gi|325198636|gb|ADY94092.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136] Length = 244 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 E K E K V + + K R + EL EH + + LG+ IW + Sbjct: 180 ----MGEAAEEKMETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEACIWRKEAV 235 Query: 243 SNQ 245 ++ Sbjct: 236 PSE 238 >gi|24987377|pdb|1J53|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 8.5 gi|24987378|pdb|1J54|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 5.8 gi|119390109|pdb|2IDO|A Chain A, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading Complex gi|119390111|pdb|2IDO|C Chain C, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading Complex Length = 186 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 76/183 (41%), Positives = 113/183 (61%), Gaps = 11/183 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 183 Query: 180 QIN 182 + Sbjct: 184 SMA 186 >gi|197103471|ref|YP_002128848.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1] gi|196476891|gb|ACG76419.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1] Length = 234 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 83/237 (35%), Positives = 126/237 (53%), Gaps = 11/237 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+IV D ETTG D DR++EI +E+ D+ T R F ++ P R EA K+HG++ Sbjct: 3 REIVLDTETTGFDPLTGDRLVEIACLEIEDFIPTGRHFHAYIDP-CRDMPAEAEKVHGLS 61 Query: 67 DEFLKDKPSFS--SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 FL+ KP F I F DF +A +AHNA FD F+N EL ++ L R I Sbjct: 62 TAFLRGKPKFEAPEIVEAFLDFVA--DAPIVAHNAAFDRAFVNYELGLCSRAELPDHRWI 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++A+++ P N L++LCKR+ I+++ R KHGAL+D+ LL+ VY+++ GG + Sbjct: 120 DTLALAKQRFPGMHNSLDALCKRFKISLAEREKHGALIDTKLLAAVYLEL-RGGRERRLE 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN-AIWDRY 240 S R +PL + EE H I+ + K+ +W ++ Sbjct: 179 LT---SSAAVSAVHAATRNSYGARPRPLAPLSSDEERAVHAAFIREVVKSEELWGKF 232 >gi|325121399|gb|ADY80922.1| bifunctional protein dnaQ [Acinetobacter calcoaceticus PHEA-2] Length = 459 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 130/224 (58%), Gaps = 12/224 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K ++ +HGI+ Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQ--KPVGDSENIHGIS 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 D+FLKDKP ++ I +D+ + AE IAHNA FD+ F++ E +R+ L + D Sbjct: 290 DDFLKDKPLYADIADTLFDYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGG--QVSFDI 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 E + N S ++ D P + EEL+ H+ ++ Sbjct: 406 DALSQ---SENSQQTTNRSRVQIDLP-VIYPSDEELNTHETWVK 445 >gi|218680719|ref|ZP_03528616.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 894] Length = 186 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 93/182 (51%), Positives = 121/182 (66%), Gaps = 7/182 (3%) Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITDEFLKDK F+ + E FF +A+WIAHNA FD+GFINAEL RI P+ P R Sbjct: 2 HGITDEFLKDKKPFAEVAEEILAFFG--DAKWIAHNATFDMGFINAELARIGLPPILPER 59 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++DTLS+ARRKHP N L++LC+RYGI SHR+KHGALLDS LL++VYI+M+ GG Q Sbjct: 60 VVDTLSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMI-GGRQAA 118 Query: 183 FGFKT----NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 FG T R E+ V S+L+R +PL R+++ E H+ + LG+ IW Sbjct: 119 FGLSTATSGQNGRGDMAEEDDVVIASVLERPRPLAPRLSQSEAQAHEALVAKLGEKGIWA 178 Query: 239 RY 240 +Y Sbjct: 179 KY 180 >gi|148555737|ref|YP_001263319.1| DNA polymerase III subunit epsilon [Sphingomonas wittichii RW1] gi|148500927|gb|ABQ69181.1| DNA polymerase III, epsilon subunit [Sphingomonas wittichii RW1] Length = 234 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 11/235 (4%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+IVFD ETTGL+ DR++EIG VEL++ +T +F + P R EA ++HG+ Sbjct: 1 MREIVFDTETTGLNPATGDRLVEIGCVELVNRVETGNSFHCYFNPQ-RSMPFEAEQVHGL 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ FL DKP F+ E F +A +AHNA FD GF+N EL + +D R++D Sbjct: 60 SERFLSDKPLFADKVEELLAFIG--DAPLVAHNASFDFGFLNWELGACGRSIVDMGRMVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL IAR+ HP +++ L++LC RYGI SHR KHGALLD+ LL+ +Y+++ GG QI G Sbjct: 118 TLQIARKMHPGAKHSLDALCSRYGIDRSHRVKHGALLDAQLLAQLYVELT-GGRQI--GL 174 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTR---ITKEELDEHDKTIQTLGKNAIW 237 E + P ++ R ++EEL+ H ++ L +W Sbjct: 175 SMGEAVVEEVVVVATPRATVAASRTIRAIRPHFASEEELERHKAFVEKL-DAPLW 228 >gi|254670687|emb|CBA06809.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha153] Length = 244 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 126/243 (51%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 E + K V + + K + + EL H+K + LG+ IW + Sbjct: 180 ----MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHEKYLDGLGEACIWRKEAV 235 Query: 243 SNQ 245 ++ Sbjct: 236 PSE 238 >gi|325134669|gb|EGC57309.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399] Length = 244 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 79/244 (32%), Positives = 128/244 (52%), Gaps = 13/244 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+ Sbjct: 3 QRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGL 61 Query: 66 TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121 T E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 62 TIEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGC 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q Sbjct: 120 TVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQF 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 + E+ K E K V + + K R + EL H + + LG+ IW + Sbjct: 178 DLMGAAAEE---KMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIWRKEA 234 Query: 242 SSNQ 245 ++ Sbjct: 235 VPSE 238 >gi|194098390|ref|YP_002001448.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae NCCP11945] gi|239998794|ref|ZP_04718718.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae 35/02] gi|240112723|ref|ZP_04727213.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae MS11] gi|240115471|ref|ZP_04729533.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID18] gi|240123321|ref|ZP_04736277.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID332] gi|240128023|ref|ZP_04740684.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae SK-93-1035] gi|254493581|ref|ZP_05106752.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291] gi|260440719|ref|ZP_05794535.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae DGI2] gi|268594640|ref|ZP_06128807.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268598788|ref|ZP_06132955.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11] gi|268601147|ref|ZP_06135314.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18] gi|268681945|ref|ZP_06148807.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332] gi|268686413|ref|ZP_06153275.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035] gi|291044028|ref|ZP_06569744.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2] gi|293399220|ref|ZP_06643385.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62] gi|193933680|gb|ACF29504.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae NCCP11945] gi|226512621|gb|EEH61966.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291] gi|268548029|gb|EEZ43447.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268582919|gb|EEZ47595.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11] gi|268585278|gb|EEZ49954.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18] gi|268622229|gb|EEZ54629.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332] gi|268626697|gb|EEZ59097.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035] gi|291012491|gb|EFE04480.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2] gi|291610634|gb|EFF39744.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62] gi|317164085|gb|ADV07626.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae TCDC-NG08107] Length = 244 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 129/243 (53%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 +T E+ + V + + K + + EL H++ + LG+ IW + Sbjct: 179 LMGETEEEEPTAKP---VASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAV 235 Query: 243 SNQ 245 ++ Sbjct: 236 PSE 238 >gi|254673235|emb|CBA08224.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha275] gi|325144796|gb|EGC67087.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240013] Length = 244 Score = 201 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 127/237 (53%), Gaps = 13/237 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDR 239 E+ K E K V + + K R + EL EH + + LG+ IW + Sbjct: 179 LMGAAAEE---KMETKPVAHTETKRSGKLKVIRADENELAEHGRYLDGLGEACIWRK 232 >gi|299771048|ref|YP_003733074.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. DR1] gi|298701136|gb|ADI91701.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon [Acinetobacter sp. DR1] Length = 458 Score = 201 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K ++ +HGI+ Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQ--KPVGDSENIHGIS 288 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 D FLKDKP ++ I +D+ + AE IAHNA FD+ F++ E +R L + D Sbjct: 289 DNFLKDKPLYAEIADTLFDYL--KGAEIIAHNATFDMNFLDMEFRRAGLPALSEVCEVTD 346 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Q++F Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGG--QVSFDI 404 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 E + N + ++ D P ++EEL+ H+ ++ K Sbjct: 405 DALSQ---SENSQNTTNKTRIQIDLP-VIYPSEEELNTHETWVKEFEKK 449 >gi|293608835|ref|ZP_06691138.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024] gi|292829408|gb|EFF87770.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024] Length = 459 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 130/224 (58%), Gaps = 12/224 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K ++ +HGI+ Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQ--KPVGDSENIHGIS 289 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 D+FLKDKP ++ I +D+ + AE IAHNA FD+ F++ E +R+ L + D Sbjct: 290 DDFLKDKPLYADIADTLFDYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTD 347 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +L+DVY+ M G Q++F Sbjct: 348 TLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGG--QVSFDI 405 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 E + N S ++ D P + EEL+ H+ ++ Sbjct: 406 DALSQ---SENSQQTTNRSRVQIDLP-VIYPSDEELNIHETWVK 445 >gi|121635185|ref|YP_975430.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18] gi|120866891|emb|CAM10650.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18] Length = 253 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 79/244 (32%), Positives = 128/244 (52%), Gaps = 13/244 (5%) Query: 7 MRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+ Sbjct: 12 QRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGL 70 Query: 66 TDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--S 121 T E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 71 TIEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGC 128 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q Sbjct: 129 TVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQF 186 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYI 241 + E+ K E K V + + K R + EL H + + LG+ IW + Sbjct: 187 DLMGAAAEE---KMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIWRKEA 243 Query: 242 SSNQ 245 ++ Sbjct: 244 VPSE 247 >gi|59801359|ref|YP_208071.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA 1090] gi|240080918|ref|ZP_04725461.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA19] gi|268597034|ref|ZP_06131201.1| DNA polymerase III [Neisseria gonorrhoeae FA19] gi|59718254|gb|AAW89659.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA 1090] gi|268550822|gb|EEZ45841.1| DNA polymerase III [Neisseria gonorrhoeae FA19] Length = 244 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 129/243 (53%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 +T E+ + V + + K + + EL H++ + LG+ IW + Sbjct: 179 LMGETEEEEPTAKP---VASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAV 235 Query: 243 SNQ 245 ++ Sbjct: 236 PSE 238 >gi|118594819|ref|ZP_01552166.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Methylophilales bacterium HTCC2181] gi|118440597|gb|EAV47224.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Methylophilales bacterium HTCC2181] Length = 222 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 82/234 (35%), Positives = 127/234 (54%), Gaps = 15/234 (6%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGLD + R+IEI A+E + T+ F ++ P R+ A ++HGI Sbjct: 1 MRQIFLDTETTGLDPNQGHRVIEIAAIEFNNRQATSNRFHFYVNPQ-REIDAAAQEVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T +FL DKP F I ++F F N +E + HNA FDVGF+N EL +I + L+ I Sbjct: 60 TLDFLNDKPLFVDIAADFIAFIN--GSELVIHNAPFDVGFLNMELGKIGMEKLESYCDGI 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +D+L A+ P RN L++LC+ + + S RS HGALLD+ LL +VYI+M G Sbjct: 118 MDSLKFAKEIRPGQRNSLDALCRAFDVDNSTRSLHGALLDAQLLGEVYIQMTRGQEAFTI 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 F EE + + + + T+ +E++ H+ ++++ + W Sbjct: 178 NF---------EEDSSKAALQSVDHGDLIVTQPALDEVEAHNSYLRSINRTDGW 222 >gi|262375943|ref|ZP_06069174.1| ribonuclease HI [Acinetobacter lwoffii SH145] gi|262309037|gb|EEY90169.1| ribonuclease HI [Acinetobacter lwoffii SH145] Length = 458 Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 136/235 (57%), Gaps = 12/235 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ + R+++ D ETTG + DRIIE+GA+E+++ T + +++ P + +++ Sbjct: 225 LQLHGPRQLILDTETTGFYYQDGDRIIEVGALEMINRKLTGSSIHIYINP--KTPVGDSV 282 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGITDEFL+DKP F I +D+ AE IAHNA FD+ F++ E +R L Sbjct: 283 NVHGITDEFLQDKPLFEEISQVLFDYL--HGAEIIAHNATFDMNFLDMEFKRAGFKALSE 340 Query: 121 -SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + DTL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G Sbjct: 341 VCDVTDTLALAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILSDVYLAMTGG-- 398 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 Q++F E++ + ++ ++ + P+ +++EL EH+ ++ + Sbjct: 399 QVSFDIDALSQ---SEDQNSRSGMARVEIELPVIL-PSEQELQEHENWVKQFEEK 449 >gi|218768496|ref|YP_002343008.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491] gi|254805280|ref|YP_003083501.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis alpha14] gi|121052504|emb|CAM08843.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491] gi|254668822|emb|CBA06831.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis alpha14] gi|319410744|emb|CBY91127.1| DNA polymerase III epsilon subunit [Neisseria meningitidis WUE 2594] gi|325127153|gb|EGC50103.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568] Length = 244 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 E + K V + + K + + EL H + + LG+ IW + Sbjct: 180 ----MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHGQYLDGLGEACIWRKEAV 235 Query: 243 SNQ 245 ++ Sbjct: 236 PSE 238 >gi|325205739|gb|ADZ01192.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M04-240196] Length = 244 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 E + K V + + K + + EL H + + LG+ IW + Sbjct: 180 ----MGEAEEEEPAAKPVASAEMKLGAKLKVIKADEAELAAHGQYLDGLGEACIWRKEAV 235 Query: 243 SNQ 245 ++ Sbjct: 236 PSE 238 >gi|15677367|ref|NP_274522.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|7226758|gb|AAF41870.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|261392239|emb|CAX49759.1| DNA polymerase III epsilon subunit [Neisseria meningitidis 8013] gi|308389659|gb|ADO31979.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha710] gi|316986028|gb|EFV64965.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76] gi|325130586|gb|EGC53333.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis OX99.30304] gi|325136592|gb|EGC59193.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579] gi|325140658|gb|EGC63175.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385] gi|325199883|gb|ADY95338.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76] gi|325201794|gb|ADY97248.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240149] gi|325208453|gb|ADZ03905.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NZ-05/33] Length = 244 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IQVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 E+ K E K V + + K R + EL H + + LG+ IW + Sbjct: 179 LMGAAAEE---KMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIWRKEAV 235 Query: 243 SNQ 245 ++ Sbjct: 236 PSE 238 >gi|304387081|ref|ZP_07369332.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria meningitidis ATCC 13091] gi|304338830|gb|EFM04933.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria meningitidis ATCC 13091] gi|325132669|gb|EGC55354.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190] gi|325138557|gb|EGC61120.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis ES14902] gi|325204491|gb|ADY99944.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240355] Length = 244 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IQVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Q + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTR--RQFD 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 E+ K E K V + + K R + EL EH + + LG+ IW + Sbjct: 179 LMGAAAEE---KMETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEACIWRKEAV 235 Query: 243 SNQ 245 ++ Sbjct: 236 PSE 238 >gi|330813374|ref|YP_004357613.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327486469|gb|AEA80874.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 225 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 130/223 (58%), Gaps = 8/223 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M +I+ D ETTGL D+IIEI +EL + T F VF+ PN S A + HGI+ Sbjct: 1 MLEIILDTETTGLSFNTDKIIEIACIELENQIPTKNKFHVFINPN-MDISDGAYQTHGIS 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +FL+DKP F I EF +F ++++ + HNA FD+ F+N ELQ ++ +PL R++DT Sbjct: 60 RDFLRDKPVFKDIAKEFLNFI--KDSKLVIHNADFDLAFLNKELQELDLEPLSKDRVVDT 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L +AR+K P S+ L++LCKR+ I S R KH AL+D +LL++VYI+++ + Sbjct: 118 LFLARQKFPGSQASLDALCKRFKINTSEREKHSALVDCNLLTEVYIELLEKKEPLLDLQP 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 + D + KT+ K + IT+EE + H K ++ Sbjct: 178 SQADINDLDSSKTINT-----NRKKIIVPITEEERNLHRKFLK 215 >gi|262279776|ref|ZP_06057561.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202] gi|262260127|gb|EEY78860.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202] Length = 458 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + DRIIE+GA+E+++ T + +++ P K ++ +HGI+ Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQ--KPVGDSENIHGIS 288 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-SRIID 125 D FLKDKP ++ I +D+ + AE IAHNA FD+ F++ E +R L + D Sbjct: 289 DNFLKDKPLYADIADTLFDYL--KGAEIIAHNATFDMNFLDMEFRRAGLPALSEVCEVTD 346 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A+ KHP +N L++L +RY I R+ HGALLD+ +LSDVY+ M G + Sbjct: 347 TLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDIDA 406 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + + KT I L ++EEL+ H+ ++ K Sbjct: 407 LSQSENSLNTANKTRVQIEL------PVILPSEEELNTHETWVKEFEKK 449 >gi|240014290|ref|ZP_04721203.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae DGI18] gi|240117765|ref|ZP_04731827.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID1] gi|240121853|ref|ZP_04734815.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae PID24-1] gi|240125570|ref|ZP_04738456.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae SK-92-679] gi|268603465|ref|ZP_06137632.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1] gi|268684159|ref|ZP_06151021.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679] gi|268587596|gb|EEZ52272.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1] gi|268624443|gb|EEZ56843.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679] Length = 244 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 126/243 (51%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 E + K V + + K + + EL H++ + LG+ IW + Sbjct: 180 ----MGETEEEETTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAV 235 Query: 243 SNQ 245 ++ Sbjct: 236 PSE 238 >gi|289809670|ref|ZP_06540299.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 187 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 76/181 (41%), Positives = 111/181 (61%), Gaps = 11/181 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ +L++VY+ M G + Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 Query: 180 Q 180 Sbjct: 187 S 187 >gi|330719972|gb|EGG98425.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC2047] Length = 212 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 78/211 (36%), Positives = 117/211 (55%), Gaps = 12/211 (5%) Query: 35 LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94 +D T R + ++ P R A ++HGIT +FL DKP F+ I +EF F + AE Sbjct: 4 IDRKLTGRHYHQYINPE-RDIDDGAAEVHGITSDFLADKPVFADIANEFLAFI--KGAEL 60 Query: 95 IAHNAKFDVGFINAELQRINKDPLDP---SRIIDTLSIARRKHPSSRNDLNSLCKRYGIT 151 + HNA FDVGFI+ E + +N+ IIDT+ +AR+KHP +N+L++LCKRYG+ Sbjct: 61 VIHNAPFDVGFIDHEFRLLNQGHPKTSEICDIIDTIVMARKKHPGQKNNLDALCKRYGVD 120 Query: 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 S R HGALLD+ +L+DVY+ M G + + G +++ E + V N +R Sbjct: 121 NSARDLHGALLDAEILADVYLLMTGGQTALMLG---ADEQAGGEAGQMVINRVSAERRPL 177 Query: 212 LFTRITKEELDEHDKTIQTLGK---NAIWDR 239 R + EEL H +Q L K + +W + Sbjct: 178 KVIRASDEELAAHHDNLQQLEKVSGDCLWLK 208 >gi|240016725|ref|ZP_04723265.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae FA6140] Length = 244 Score = 198 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 126/243 (51%), Gaps = 13/243 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGL + DR++E +E+++ T++ +++ P R EA ++HG+T Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPE-RDMPEEAARVHGLT 62 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP--SR 122 + L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 63 IQVLEEKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCT 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + DTL+IAR P + L++LC R+ + S R HGAL+D LL +VY+ M + Sbjct: 121 VTDTLAIAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDL- 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 E + K V + + K + + EL H++ + LG+ IW + Sbjct: 180 ----MGETEEEETTAKPVASAEMKLGAKLKVIKADEAELAAHEEYLDGLGEACIWRKEAV 235 Query: 243 SNQ 245 ++ Sbjct: 236 PSE 238 >gi|329118044|ref|ZP_08246757.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327465932|gb|EGF12204.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 247 Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 77/241 (31%), Positives = 124/241 (51%), Gaps = 14/241 (5%) Query: 6 KMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R+I+ D ETTGL + DRI+E +E+ T RT +++ P+ R EA +HG Sbjct: 3 RERQIILDTETTGLYSDRGDRILEFAGIEMRKRRLTERTLHLYIHPD-RDIPEEAAAVHG 61 Query: 65 ITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 IT + L K+ P F+++ E DF + AE I HNA+FDVGF++ E +R+ ++ Sbjct: 62 ITLDTLAEKNAPKFAAVGQEIADFL--RGAELIIHNARFDVGFLDMEFERMGLPTIEELG 119 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + DTL++AR K+P + L++LC R I S R HGAL+D LL++VY+ M Sbjct: 120 CEVTDTLAMAREKYPGQKASLDALCGRLDIDRSKRVYHGALIDCELLAEVYLAMTREQFD 179 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAI 236 + G N + +T L++ + + EL H + + G + + Sbjct: 180 LVGGSDDNNGDTPAQNTRTA--APLVRTGRLKVIKADATELAAHAAILDEINQATGGHCL 237 Query: 237 W 237 W Sbjct: 238 W 238 >gi|294788746|ref|ZP_06753987.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC 29453] gi|294483228|gb|EFG30914.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC 29453] Length = 272 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 123/238 (51%), Gaps = 10/238 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 MI R+I+ D ETTGL + DR+IE +E+++ T R + + P R+ S Sbjct: 1 MILDKDKRQIILDTETTGLYANAAENPDRLIEFAGLEMMNRQLTGRNLHLLIHPQ-REIS 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 EA +H IT L DKP F+ + + +DF + AE I HNAKFDVGF+NAE R+ Sbjct: 60 EEATAVHNITLSQLVDKPIFAQVAQQIFDFI--KGAELIIHNAKFDVGFLNAEFARVGLP 117 Query: 117 PLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ I DTL +A+ + +N L++LC R G+ S R HGAL+D LLS+VY+ M Sbjct: 118 NVETICEITDTLEMAKNLYHGQKNSLDALCNRLGVDRSKRVFHGALIDCELLSEVYLGMT 177 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 G + ++ ++ E + V + + ++EL H+ + L K Sbjct: 178 RGQFSLMADWEDEDEN--SEINQIVVQHTFQRTGSLKVVLANEDELAAHEAILADLDK 233 >gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405] gi|125713736|gb|ABN52228.1| DNA polymerase III catalytic subunit, PolC type [Clostridium thermocellum ATCC 27405] Length = 1442 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL + D+I EIGAV++ + + TF F+ P +KL GITD+ Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKIKEGKIVD-TFSTFVNPEI-PIPEFVVKLTGITDD 486 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + EF +F + +AHNA FD GFI + IN++ +P +IDTL Sbjct: 487 MVSDAPTIDKVLPEFLEFVGT--SPLVAHNAVFDTGFIRHNARLINRNVDNP--VIDTLE 542 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++R+ P ++ L+ + K G+++ + H AL D+ +++IK + ++ N Sbjct: 543 LSRQMFPELKKHKLDVVAKHLGVSLENH--HRALDDAKACGEIFIKCLEILAEKNV 596 >gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360] gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20] gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360] gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20] gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 1313] Length = 1442 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL + D+I EIGAV++ + + TF F+ P +KL GITD+ Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKIKEGKIVD-TFSTFVNPEI-PIPEFVVKLTGITDD 486 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + EF +F + +AHNA FD GFI + IN++ +P +IDTL Sbjct: 487 MVSDAPTIDKVLPEFLEFVGT--SPLVAHNAVFDTGFIRHNARLINRNVDNP--VIDTLE 542 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++R+ P ++ L+ + K G+++ + H AL D+ +++IK + ++ N Sbjct: 543 LSRQMFPELKKHKLDVVAKHLGVSLENH--HRALDDAKACGEIFIKCLEILAEKNV 596 >gi|332978349|gb|EGK15074.1| DNA polymerase III, epsilon subunit [Psychrobacter sp. 1501(2011)] Length = 577 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 121/229 (52%), Gaps = 14/229 (6%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTGLD+ K DR+IE+G +EL++ T V++ P R E +++HGIT Sbjct: 306 RQLIMDTETTGLDALKGDRVIEVGIIELVNRKFTGEKLHVYINPE-RGMDDEVIRVHGIT 364 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK-DPLDPSRIID 125 + FL DKP F + ++F AE IAHNA FD+ F++ E R+ D + + D Sbjct: 365 EAFLADKPKFKEVAKPLYEFML--GAELIAHNAPFDMSFLSMEFDRVGLSDFAEKVTVTD 422 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L +A++++P +N L++L +R + R+ HGALLDS +L++VY+ M G + Sbjct: 423 SLVMAKQQYPGQKNTLDALVRRLNVGKMDRTFHGALLDSEILAEVYLAMTGGQVALAIDE 482 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 T + + +LK + P LD H + L K Sbjct: 483 DTQSEGEGSHADFSHLASQILKANTP---------LDNHVSWVSKLLKK 522 >gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10] gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10] Length = 1433 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+ + DRI EIGAV++ + +R F F+ P G +KL GIT++ Sbjct: 422 FVVFDIETTGLNPQQDRITEIGAVKVRNGQIVDR-FSAFVNP-GVSIPSFIVKLTGITND 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + +EF +F Q + +AHNA FDVGFI + I + +P +DTL Sbjct: 480 MVKDAPPIEQVLNEFMEFI--QGSVLVAHNANFDVGFIKHNAKIIGEKVKNP--YLDTLE 535 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R+ P R LN + K I + + H A+ DS + ++I + Sbjct: 536 LCRKMFPELGRYKLNIVAKHLKIELENH--HRAVDDSMATAKIFIHCL 581 >gi|257483794|ref|ZP_05637835.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 178 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 85/181 (46%), Positives = 111/181 (61%), Gaps = 9/181 (4%) Query: 1 MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M +N R IV D ETTG+ RIIEIG VEL+ T R F V+L P+ R++ Sbjct: 1 MALQNLDNRSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPD-RESDEG 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---- 114 A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA FDVGFIN E + Sbjct: 60 AIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDR 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D I+DTL +AR +HP RN L++LCKRYG+ S R HGALLDS +L+DVY+ M Sbjct: 118 ADITQHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177 Query: 175 M 175 Sbjct: 178 T 178 >gi|21672521|ref|NP_660588.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|21623143|gb|AAM67799.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 234 Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 96/241 (39%), Positives = 135/241 (56%), Gaps = 15/241 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 + N R IV D ETTG++S RIIEIGA+E+++ T + F ++ PN R Sbjct: 1 MMNNTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIE 59 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK- 115 +A K+HGITD+FL DKPSF I +F+++ +N+E I HNA FDVGFIN E + K Sbjct: 60 SDASKIHGITDDFLSDKPSFKDIAKDFFNYI--KNSELIIHNASFDVGFINQEFSMLTKK 117 Query: 116 --DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 D + IIDTL IAR+ P +N L++LC RY I SHR HGA+LD+ LL +Y+ Sbjct: 118 IQDISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLL 177 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 M G I F +R F+ KK++ K + K EL H++ ++ L + Sbjct: 178 MTSGQESIIFNKNIQNERNFRYIKKSITK----KHRFLKIIKANKTELKLHNEYLKFLKE 233 Query: 234 N 234 Sbjct: 234 K 234 >gi|167010822|ref|ZP_02275753.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica FSC200] Length = 230 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 90/239 (37%), Positives = 127/239 (53%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN K AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YKVEAGALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 N +T + V ++L + + ++ H + L ++A W Sbjct: 178 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISAHHSYLSNLLKLEEDAKW 230 >gi|257454857|ref|ZP_05620108.1| bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit [Enhydrobacter aerosaccus SK60] gi|257447790|gb|EEV22782.1| bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit [Enhydrobacter aerosaccus SK60] Length = 595 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 12/229 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG +++N DRIIE+G VE+++ T V++ P + E +++HGI Sbjct: 366 RQLILDTETTGFEAQNGDRIIEVGIVEMINRRFTGEKLHVYINPKI-EMGEEVIRVHGIH 424 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII-D 125 + FL D P F + +DF Q AE IAHNA FD+ F+ AE R+ ++ + + D Sbjct: 425 NAFLNDMPVFEQVGEAIYDFL--QGAELIAHNAGFDMSFLQAEFARLGLPDINQTVTVTD 482 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L+IA+R RN L++L KR + R+ HGALLD+ +L++VY+ M G Q+ Sbjct: 483 SLAIAKRMFAGQRNTLDALVKRLNVGKQDRTFHGALLDAEILAEVYLAMTGG--QVALAI 540 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + + +KR F ++ E H + + L N Sbjct: 541 DDEVGGGVGGATEHQRFSTTIKR----FLASSEAE-QAHLEWLNALKNN 584 >gi|187931822|ref|YP_001891807.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187712731|gb|ACD31028.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 230 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 126/239 (52%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YEVEAGALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121 +EFL DKP F E +F + AE I HNA FDV FIN E + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWEFSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 N +T + V ++L + + ++ H + L ++A W Sbjct: 178 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISAHHSYLSNLLKLEEDAKW 230 >gi|89256347|ref|YP_513709.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica LVS] gi|115314792|ref|YP_763515.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|254367683|ref|ZP_04983704.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica 257] gi|254369321|ref|ZP_04985333.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp. holarctica FSC022] gi|89144178|emb|CAJ79442.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica LVS] gi|115129691|gb|ABI82878.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|134253494|gb|EBA52588.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica 257] gi|157122271|gb|EDO66411.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp. holarctica FSC022] Length = 238 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 90/239 (37%), Positives = 127/239 (53%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN K AL +HG+T Sbjct: 11 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YKVEAGALAIHGLT 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + Sbjct: 70 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 127 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 128 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 185 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 N +T + V ++L + + ++ H + L ++A W Sbjct: 186 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISAHHSYLSNLLKLEEDAKW 238 >gi|56707679|ref|YP_169575.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110670150|ref|YP_666707.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis FSC198] gi|134301975|ref|YP_001121944.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|224456748|ref|ZP_03665221.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254370187|ref|ZP_04986193.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|254874491|ref|ZP_05247201.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604171|emb|CAG45181.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320483|emb|CAL08564.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis FSC198] gi|134049752|gb|ABO46823.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|151568431|gb|EDN34085.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|254840490|gb|EET18926.1| DNA-directed DNA polymerase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158843|gb|ADA78234.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. tularensis NE061598] Length = 230 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 89/239 (37%), Positives = 127/239 (53%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YEVEAGALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 N +T + V ++L + + ++ H + L ++A W Sbjct: 178 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISAHHSYLSNLLKLEEDAKW 230 >gi|2833216|sp|Q08880|DPO3E_BUCAP RecName: Full=DNA polymerase III subunit epsilon gi|1794288|gb|AAC44791.1| DNA polymerase III epsilon chain [Buchnera aphidicola] Length = 233 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 96/238 (40%), Positives = 134/238 (56%), Gaps = 15/238 (6%) Query: 5 NKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R IV D ETTG++S RIIEIGA+E+++ T + F ++ PN R +A Sbjct: 3 NTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIESDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---D 116 K+HGITD+FL DKPSF I +F+++ +N+E I HNA FDVGFIN E + K D Sbjct: 62 SKIHGITDDFLSDKPSFKDIAKDFFNYI--KNSELIIHNASFDVGFINQEFSMLTKKIQD 119 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + IIDTL IAR+ P +N L++LC RY I SHR HGA+LD+ LL +Y+ M Sbjct: 120 ISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLLMTS 179 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 G I F +R F+ KK++ K + K EL H++ ++ L + Sbjct: 180 GQESIIFNKNIQNERNFRYIKKSITK----KHRFLKIIKANKTELKLHNEYLKFLKEK 233 >gi|296113099|ref|YP_003627037.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4] gi|295920793|gb|ADG61144.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4] gi|326560092|gb|EGE10482.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 46P47B1] gi|326560475|gb|EGE10857.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169] gi|326561678|gb|EGE12015.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 103P14B1] gi|326564194|gb|EGE14430.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 12P80B1] gi|326565793|gb|EGE15955.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1] gi|326570446|gb|EGE20486.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8] gi|326571129|gb|EGE21153.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7] gi|326573423|gb|EGE23391.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 101P30B1] gi|326575681|gb|EGE25604.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72] gi|326577147|gb|EGE27041.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E] Length = 432 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 120/233 (51%), Gaps = 19/233 (8%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTG + + DRI+E+G VEL+ T V++ P + +++HGI+ Sbjct: 212 RQLIMDTETTGFNEAGGDRIVEVGIVELVGRKFTGNILHVYINPE-KHMDDAVIQVHGIS 270 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIID 125 + F+ DKP F+ + + ++F +E IAHNA FD+ F+N E R S ++ D Sbjct: 271 NAFVADKPKFAEVAQQIYEFMA--GSEVIAHNAAFDMKFLNMEFNRAGLSNFANSVKVTD 328 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++A++ +P +N L++L KR G+ R+ HGALLDS +L++VY+ M G Sbjct: 329 TLALAKQMYPGQKNSLDALVKRLGVGQKDRTFHGALLDSEILAEVYLAMTGGQ----IAM 384 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 ++D ++ + +++ +++ +A+W Sbjct: 385 AIDDDNTGGSNTRSTGSAFYDLSQYADSLALSESDIEA----------DALWR 427 >gi|62261930|gb|AAX78030.1| unknown protein [synthetic construct] Length = 265 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 91/249 (36%), Positives = 131/249 (52%), Gaps = 22/249 (8%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ + R++ D ETTG D K +RIIE GAVE++D T + PN + A Sbjct: 24 MLEMS--RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YEVEAGA 80 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RIN 114 L +HG+T+EFL DKP F E +F + AE I HNA FDV FIN EL + Sbjct: 81 LAIHGLTNEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYG 138 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M Sbjct: 139 TLEQNVAKIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAM 198 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TL 231 G Q N +T + V ++L + + ++ H + L Sbjct: 199 TGG--QTNLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISAHHSYLSNLLKL 250 Query: 232 GKNAIWDRY 240 ++A W Y Sbjct: 251 EEDAKWYPY 259 >gi|332184121|gb|AEE26375.1| DNA polymerase III epsilon subunit [Francisella cf. novicida 3523] Length = 230 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRVTGNTLHFYCNPN-YEVEAGALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121 +EFL DKP F E DF + AE I HNA FDV FIN EL + + + Sbjct: 62 NEFLADKPLFEDKVDEMIDFL--KGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 N +T + + ++L K D + ++ H + L ++A W Sbjct: 178 NLSLQTAKTISKNSIDIDINKLNLRKADDSI------SDISVHHNYLSNLLKLEEDAKW 230 >gi|54114497|gb|AAV29882.1| NT02FT1179 [synthetic construct] Length = 230 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 89/239 (37%), Positives = 126/239 (52%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YEVEAGALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 N +T + V ++L + + ++ H + L + A W Sbjct: 178 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISAHHSYLSNLLKLEEGAKW 230 >gi|169656602|ref|YP_001428489.2| DNA polymerase III, subunit epsilon [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954177|ref|ZP_06558798.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica URFT1] gi|295312420|ref|ZP_06803198.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica URFT1] gi|164551670|gb|ABU61533.2| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 238 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 124/232 (53%), Gaps = 17/232 (7%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN K AL +HG+T Sbjct: 11 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YKVEAGALAIHGLT 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + Sbjct: 70 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 127 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 128 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 185 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 N +T + V ++L + + ++ H + L K Sbjct: 186 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISAHHSYLSNLLK 231 >gi|71281267|ref|YP_268980.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H] gi|71147007|gb|AAZ27480.1| DNA polymerase III, epsilon subunit [Colwellia psychrerythraea 34H] Length = 256 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 124/250 (49%), Gaps = 27/250 (10%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCP-----NGRKNSPEALK 61 R I+ D ETTG++ + RI+EIG VE+++ T RT+ ++ P + E + Sbjct: 15 RLIILDTETTGINPREGHRIVEIGCVEMINRQLTGRTYHAYIKPLDQRGQVFQMEQEVIN 74 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN------- 114 +HG+T+EFL DKP FS + EF DF + AE + HN+KFDVGF++ E N Sbjct: 75 IHGLTNEFLADKPIFSQVVHEFIDFI--RGAELVIHNSKFDVGFMDHEFSLFNSMGRSQD 132 Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVY 171 D I DTL +++ + S + L+ L + Y + + R+ HGAL+D+ LL+ VY Sbjct: 133 KVPMTEDICTITDTLKVSKDELGSPK-TLDYLARFYRVDKLVDRTYHGALIDAQLLAYVY 191 Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 I+M S N + ++ R+K + +EL H + + + Sbjct: 192 IEMTRKQSSFNLSSGDGTNADANAIRRVSST-----RNKLKVIAASADELVAHTERVAVI 246 Query: 232 GK---NAIWD 238 GK + +W Sbjct: 247 GKKGGDPLWK 256 >gi|254372921|ref|ZP_04988410.1| hypothetical protein FTCG_00492 [Francisella tularensis subsp. novicida GA99-3549] gi|151570648|gb|EDN36302.1| hypothetical protein FTCG_00492 [Francisella novicida GA99-3549] gi|332678259|gb|AEE87388.1| DNA polymerase III epsilon subunit [Francisella cf. novicida Fx1] Length = 230 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 91/239 (38%), Positives = 128/239 (53%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNTLHFYCNPN-YEVEAGALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-----QRINKDPLDPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELGLLRNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 RI+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 RIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 N +T + V ++L + + ++ H + L ++A W Sbjct: 178 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISVHHSYLSNLLKLEEDAKW 230 >gi|254374374|ref|ZP_04989856.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548] gi|151572094|gb|EDN37748.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548] Length = 238 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 91/239 (38%), Positives = 128/239 (53%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T T + PN + AL +HG+T Sbjct: 11 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNTLHFYCNPN-YEVEAGALAIHGLT 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-----QRINKDPLDPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + Sbjct: 70 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELGLLRNNKYGTLEQNVA 127 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 RI+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 128 RIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 185 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 N +T + V ++L + + ++ H + L ++A W Sbjct: 186 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISVHHSYLSNLLKLEEDAKW 238 >gi|296132882|ref|YP_003640129.1| DNA polymerase III, alpha subunit [Thermincola sp. JR] gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR] Length = 1442 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG D IIEIGAV++ +R F F+CP GR+ PE +L GIT+ Sbjct: 430 YVVFDLETTGFSPVTDEIIEIGAVKIHGNKILDR-FSAFVCP-GREIPPEVQELTGITNN 487 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + + +F DF +A +AHNA+FD GF+ A +++I L ++DTL Sbjct: 488 MVSDAPPIAEVLPKFIDFVG--DAVLVAHNAQFDTGFLRANMEKILNRTLA-QPVLDTLG 544 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +AR P + L +L K + + + + H A+ D+ + + IK + ++ N Sbjct: 545 LARGLFPDMKNHKLKTLAKEFNVKLENH--HRAVDDAEATAQLLIKFLERLAEHNI 598 >gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM 2782] gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM 2782] Length = 1433 Score = 191 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL+ D+I EIGAV++ + +R F F+ P G +KL GITD+ Sbjct: 422 FVVFDIETTGLNPHQDKITEIGAVKVRNGQIVDR-FSAFVNP-GVSIPSFIVKLTGITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + +EF +F Q + +AHNA FDVGFI + + + +P IDTL Sbjct: 480 MVKDAPPVEQVLNEFMEFI--QGSVLVAHNANFDVGFIKQNAKLMGEKVKNP--YIDTLE 535 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R+ P R LN + K I + + H A+ DS + +++ + Sbjct: 536 LCRKMFPELGRYKLNIVAKHLKIELENH--HRAVDDSMATAKIFMHCI 581 >gi|118497560|ref|YP_898610.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. novicida U112] gi|195536256|ref|ZP_03079263.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. novicida FTE] gi|118423466|gb|ABK89856.1| DNA polymerase III, epsilon subunit [Francisella novicida U112] gi|194372733|gb|EDX27444.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp. novicida FTE] Length = 230 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 89/239 (37%), Positives = 127/239 (53%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YEVEAGALAIHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + Sbjct: 62 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 N +T + V ++L + + ++ H + L ++A W Sbjct: 178 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISVHHSYLSNLLKLEEDAKW 230 >gi|241668417|ref|ZP_04755995.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876950|ref|ZP_05249660.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842971|gb|EET21385.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 230 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPN-YEVEAGALAVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-----QRINKDPLDPS 121 +EFL DKPSF + DF + AE I HNA FDV FIN EL + + Sbjct: 62 NEFLADKPSFEENVDQMIDFL--RGAEIIIHNAAFDVPFINWELGLLKNNKYGTLEQHVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYHIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAIW 237 N +T ++ + L ++ + + EHDK + L ++A W Sbjct: 178 NLVLQTTKNASKDTIDIDFDKLKLRSANETIIN------ISEHDKYLCNILKLEESAKW 230 >gi|167770615|ref|ZP_02442668.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM 17241] gi|167667210|gb|EDS11340.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM 17241] Length = 1445 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 7/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL + +RI EIGAV+L + +R F F+ P R P+ +L GITD+ Sbjct: 427 IVFDLETTGLSAATERITEIGAVKLRNGEIVDR-FNTFVNPE-RSIPPKITELTGITDDD 484 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P +F+ F +A IAHNA FD F+ +R + IDT+ + Sbjct: 485 VRGAPLEGEALRQFYAFCGGSSAVLIAHNAPFDTSFLRQCARRCGMEY--NFTAIDTVVL 542 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +R P ++ L+ + K G + + H A D+ +L+ +YI+MM Sbjct: 543 SRSLFPELKKHKLDIVAKHLG--LGEFNHHRACDDAEMLARIYIRMME 588 >gi|208779358|ref|ZP_03246704.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG] gi|208745158|gb|EDZ91456.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG] Length = 238 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 89/239 (37%), Positives = 127/239 (53%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 11 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPN-YEVEAGALAIHGLT 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ-----RINKDPLDPS 121 +EFL DKP F E +F + AE I HNA FDV FIN EL + + + Sbjct: 70 NEFLADKPLFEDKVDEMIEFL--RGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVA 127 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 128 KIVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRAFHGALLDSELLADVYLAMTGG--QT 185 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ---TLGKNAIW 237 N +T + V ++L + + ++ H + L ++A W Sbjct: 186 NLSLQTAKTVSKNSIDIDVNKLNLRNAEDSI------SDISVHHSYLSNLLKLEEDAKW 238 >gi|294670031|ref|ZP_06734988.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308152|gb|EFE49395.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 244 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 113/241 (46%), Gaps = 16/241 (6%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R+I+ D ETTGL + + DR++E +E+ T +++ P+ R EA +HG Sbjct: 3 RERQIILDTETTGLYADRGDRMLEFAGIEMKKRQLTMNNLHLYIHPD-RDIPEEAAAVHG 61 Query: 65 ITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 IT E L ++ P F + + DF + AE I HNA+FDVGF+N E R+ ++ Sbjct: 62 ITLEQLEERNAPKFEQVGRQIADFL--RGAELIIHNARFDVGFLNMEFARMGLPSIEELD 119 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I DTL++AR K P + L++LC R + S R HGAL+D LL++VY+ M Sbjct: 120 CEITDTLAMAREKFPGQKASLDALCSRLDVDRSKRVLHGALIDCELLAEVYLAMTREQ-- 177 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL----GKNAI 236 F E+ + R EE H + + L G + Sbjct: 178 --FDLVGAEETAAAAQSADTGIAVQTAGGGLRILRADAEETAAHLEYLAELDKASGGQCL 235 Query: 237 W 237 W Sbjct: 236 W 236 >gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1] gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1] Length = 1442 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 16/230 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + D IIEI AV++ D + TF+ F P GR S ++ Sbjct: 420 VHLDEATYVVFDVETTGLSAVYDTIIEIAAVKIQDG-EVVDTFERFANP-GRPLSNTIIE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITD+ LKD P S + E+ ++ +A +AHNA FD+GF+N L++ P + Sbjct: 478 LTHITDDMLKDAPDISEVLKEYNEWIG--DAVLVAHNASFDIGFLNVGLKKAGL-PKSNN 534 Query: 122 RIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL + R +P +N LN+L K++ + ++ H A+ D+ +++KM+ Sbjct: 535 PVIDTLELGRFLYPDFKNYRLNTLAKKFNVELTQH--HRAIYDTEATGQIFLKMLKDARN 592 Query: 181 INFGFKTNEDRFFKE---EKKTVP-NISLLKRDKP----LFTRITKEELD 222 + +++ E K+ P + +LL R + LF I+ +D Sbjct: 593 RGITYHDELNQYMGEGGAYKRARPSHCTLLVRTQEGLKNLFKLISLSHID 642 >gi|71083046|ref|YP_265765.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] gi|91762529|ref|ZP_01264494.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] gi|71062159|gb|AAZ21162.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] gi|91718331|gb|EAS84981.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] Length = 223 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 128/230 (55%), Gaps = 12/230 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M++++ D ETTGL + RI+EIG +EL + T F +L P RK S +AL++HG Sbjct: 1 MKEVILDTETTGLSVRDGHRIVEIGCIELENLIPTKNRFHCYLNPE-RKVSEKALEVHGY 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDEFL F I EF F +N + HNA+FD+ +N EL + K+ L+ ++D Sbjct: 60 TDEFLSTHKKFGDIVDEFLVFI--ENKRLVIHNAEFDLSHLNNELSLLGKEKLNSENVVD 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL++AR K P S L++LCKRY I S R++H AL+D LL+ VYI ++ + F Sbjct: 118 TLALARDKFPGSPISLDALCKRYRIDNSKRTQHTALIDCDLLAKVYINLL-DQKEPTLNF 176 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ-TLGKN 234 K ++ +K + N + R + ++ EL H + ++ +L KN Sbjct: 177 KN------EDNEKIIINSNDTNRYYKKVVKPSEAELKLHKEYLKNSLKKN 220 >gi|238022806|ref|ZP_04603232.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147] gi|237866009|gb|EEP67145.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147] Length = 244 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 124/244 (50%), Gaps = 9/244 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 M + R+I+ D ETTG DR+IE +E+++ T T +++ P R Sbjct: 1 MTPAHP-RQIILDTETTGFYHSAAENPDRLIEFAGLEMVNRQLTENTLHLYIHPQ-RDIP 58 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 EA +HGIT + L+ KP F+ + + +DF + AE I HNAKFD+GF+NAE R+ Sbjct: 59 AEAAAIHGITLDQLEGKPVFAQVAQQIFDFL--KGAELIIHNAKFDIGFLNAEFARVGLP 116 Query: 117 PLDP-SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P+D +IDTL +AR K+P +N+L++LC R G+ S R HGAL+D LL VY+ M Sbjct: 117 PIDSVCSVIDTLEMARNKYPGQKNNLDALCNRLGVDRSRRVLHGALIDCELLGGVYLAMT 176 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + + + + T + + D + +E H+ + LG Sbjct: 177 RNQFSLTDVLEDEAETAAPAAQTTAAPAPVFRADSLIVLHADADEAAAHEAYLDGLGSEC 236 Query: 236 IWDR 239 ++ + Sbjct: 237 VYRQ 240 >gi|20807845|ref|NP_623016.1| DNA polymerase III PolC [Thermoanaerobacter tengcongensis MB4] gi|24418364|sp|Q8RA32|DPO3_THETN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|20516408|gb|AAM24620.1| DNA polymerase III alpha subunit, the Gram-positive type [Thermoanaerobacter tengcongensis MB4] Length = 1401 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 98/176 (55%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL + ND IIEIGAV++ + K TF+ F+ P S KL GI + Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKIKN-KKIVDTFETFVNPQI-PISSFITKLTGIDES 445 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + +F +F + A +AHNA FDV FI ++ +++ + ++DTL Sbjct: 446 MVKDAPLIEEVLPKFLEF--AKGAVLVAHNANFDVSFIKSKAKKLGLTV--ENTVLDTLE 501 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++R + +N L++L + + + + H H A+ D+ ++++IKM+ +I Sbjct: 502 LSRHLYQDLKNYKLDTLAEFFEVKLLHH--HRAVEDAKATAEIFIKMLEKLQEIGI 555 >gi|254479461|ref|ZP_05092788.1| DNA polymerase III, alpha subunit, Gram-positive type [Carboxydibrachium pacificum DSM 12653] gi|214034604|gb|EEB75351.1| DNA polymerase III, alpha subunit, Gram-positive type [Carboxydibrachium pacificum DSM 12653] Length = 1375 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 98/176 (55%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL + ND IIEIGAV++ + K TF+ F+ P S KL GI + Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKIKN-KKIVDTFETFVNPQI-PISSFITKLTGIDES 445 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + +F +F + A +AHNA FDV FI ++ +++ + ++DTL Sbjct: 446 MVKDAPLIEEVLPKFLEF--AKGAVLVAHNANFDVSFIKSKAKKLGLTV--ENTVLDTLE 501 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++R + +N L++L + + + + H H A+ D+ ++++IKM+ +I Sbjct: 502 LSRHLYQDLKNYKLDTLAEFFEVKLLHH--HRAVEDAKATAEIFIKMLEKLQEIGI 555 >gi|167627857|ref|YP_001678357.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597858|gb|ABZ87856.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 230 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 91/239 (38%), Positives = 128/239 (53%), Gaps = 20/239 (8%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R++ D ETTG D K +RIIE GAVE++D T + PN + AL +HG+T Sbjct: 3 RQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPN-YEVEAGALAVHGLT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-----QRINKDPLDPS 121 +EFL DKP F + DF + AE I HNA FDV FIN EL + + Sbjct: 62 NEFLADKPLFEENVDQMIDFL--RGAEIIIHNAAFDVPFINWELGLLKNNKYGTLEQHVA 119 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +I+D+L +AR+KHP +N+L++LCKRY I HR+ HGALLDS LL+DVY+ M G Q Sbjct: 120 KIVDSLELARKKHPLQKNNLDALCKRYHIRNDHRTFHGALLDSELLADVYLAMTGG--QT 177 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAIW 237 N +T ++ + L ++ + + EHDK + L ++A W Sbjct: 178 NLVLQTTKNASKDTIDIDFDKLKLRSANETIIN------ISEHDKYLCNILKLEESAKW 230 >gi|154484752|ref|ZP_02027200.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC 27560] gi|149734600|gb|EDM50517.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC 27560] Length = 1474 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 92/168 (54%), Gaps = 9/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFD+ETTG +K+D+IIEIGAV++ + +R F F+ P KL I D Sbjct: 408 RYVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDR-FSTFVNPEI-PIPFRIEKLTSIND 465 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + D P I +F +F +++ +AHN+ FD+ FI A +R +D +IDT+ Sbjct: 466 EMVIDAPKIEEILPQFMEFC--KDSVMVAHNSDFDMSFIEANCKR--QDLECDFTVIDTV 521 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +++R R L+++ K GI + H H A+ D+ + +++K+ Sbjct: 522 AMSRYLIIGLGRYKLDNVAKALGIVLDHH--HRAVDDAECTALIFLKL 567 >gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp. spizizenii str. W23] gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. spizizenii str. W23] Length = 1437 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 104/185 (56%), Gaps = 9/185 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ R S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P + +F ++ + +AHNA FD+GF+N +++ + + +IDTL Sbjct: 479 MLRDAPDVVDVIRDFREWIGDD--ILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185 + R +P + LN+LCK++ I ++ H A+ D+ + + +KM+ ++ I + Sbjct: 537 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAAEKGIQYHD 594 Query: 186 KTNED 190 + NE+ Sbjct: 595 ELNEN 599 >gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] Length = 1440 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 30/254 (11%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 ++ +VFD ETTGL+++ D +IEI AV++ + T+ + P R P+ ++L G Sbjct: 423 DETEYVVFDTETTGLNAREDTLIEIAAVKVKAGQIVD-TYATLIDPE-RALDPKIVELTG 480 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E + +P F F + A +AHNA+FDVGF+N +R+ DP + +I Sbjct: 481 ITNEMVAGQPKLKEALDGFRQF--ARGAVLVAHNAEFDVGFLNQCAERLGLDPWEE-PVI 537 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL++AR +P +N L +L +++ + + + H AL DS + V++ M+ Sbjct: 538 DTLALARVLYPGEKNYKLKTLTQKFSVDLVNH--HRALADSEATAKVFVHMLKDAKARGI 595 Query: 184 G--FKTNEDRFFKEEKKTVP-NISLLKRDKP------------------LFTRITKEELD 222 N R + + P + ++L R++ RI K L Sbjct: 596 HNLLDMNHLRGQIDISRVRPFHATVLVRNREGLRNLYRLVSIAHTQYLHRVPRIPKSALA 655 Query: 223 EHDKTIQTLGKNAI 236 H + + +G Sbjct: 656 RHREGL-LIGTACR 668 >gi|262277819|ref|ZP_06055612.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114] gi|262224922|gb|EEY75381.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114] Length = 223 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 132/224 (58%), Gaps = 10/224 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M++++ D ETTGL S ND+IIEI +E+ D+ T F VFL P + S A HGI+ Sbjct: 1 MKEVLLDTETTGLSSVNDKIIEIACIEIEDHIPTGEKFHVFLNPE-MEISQGAYDTHGIS 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 EFLK+KP F+ + +F F + + + + HNA+FD+ F+N EL+ + + + I+DT Sbjct: 60 KEFLKNKPKFNDVAKDFTKFIDGK--KLVIHNAEFDLAFLNKELKEVGEKQISKDNIVDT 117 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 L+IAR K P ++N L++LCKR+ I S R KH ALLD LL+ VYI++ + F F Sbjct: 118 LNIAREKFPGAQNSLDALCKRFKIDNSRRQKHSALLDCELLAKVYIELFEK-KEPTFEFD 176 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 N + +++ N+ +K K + +IT EE H + +Q Sbjct: 177 LNA------QDESIKNVKNIKDRKQIIAQITNEEKRLHKEFLQK 214 >gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328] gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328] Length = 1421 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 9/186 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N +VFDIETTGL + ++I EIGAV+++D + F + P + +L Sbjct: 397 MNLREFVVFDIETTGLSNATEKITEIGAVKIVDNKIVDE-FNQLINPEI-PIPEKITELT 454 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 IT+E +KD P ++ EF F + IAHNA FD+GFI + +P+ Sbjct: 455 SITNEMVKDMPKIDAVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCIDLGINPV--RTY 510 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL+ AR P + + L++L K+Y + + + H A D+ +V+I M+ Q Sbjct: 511 IDTLAFARALEPHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMVNNLEQRG 568 Query: 183 FGFKTN 188 F F N Sbjct: 569 FKFDIN 574 >gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna BVS033A4] gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna BVS033A4] Length = 1421 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 9/186 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N +VFDIETTGL + ++I EIGAV+++D + F + P + +L Sbjct: 397 MNLREFVVFDIETTGLSNATEKITEIGAVKIVDNKIVDE-FNQLINPEI-PIPEKITELT 454 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 IT+E +KD P ++ EF F + IAHNA FD+GFI + +P+ Sbjct: 455 SITNEMVKDMPKIDAVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCIDLGINPV--RTY 510 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL+ AR P + + L++L K+Y + + + H A D+ +V+I M+ Q Sbjct: 511 IDTLAFARALEPHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMVNNLEQRG 568 Query: 183 FGFKTN 188 F F N Sbjct: 569 FKFDIN 574 >gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 1410 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 103/173 (59%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL S ND IIEIGAV++ ++ + TF+ F+ P S KL GITD+ Sbjct: 399 FVVFDIETTGLSSINDNIIEIGAVKIKNFQIVD-TFETFVNPQVH-ISKFITKLTGITDD 456 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ PS I +F DF +++ +AHNA FDV FI + + + + +P ++DTL Sbjct: 457 MVKEYPSIEEILPKFLDFI--KDSILVAHNANFDVTFIKTKARNLGMEVDNP--VLDTLE 512 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++R + + +N L+++ + G+++ + H A+ D+ ++++IK + + Sbjct: 513 LSRHMYENLKNYKLDTVAQHLGVSLENH--HRAVDDAKATAEIFIKSINKLKE 563 >gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1440 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 30/254 (11%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 ++ +VFD ETTGL+++ D +IEI AV++ + T+ + P R P+ ++L G Sbjct: 423 DETEYVVFDTETTGLNAREDTLIEIAAVKVKAGQIVD-TYATLIDPE-RSLDPKIVELTG 480 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E + +P F F + A +AHNA+FDVGF+N +R+ DP + +I Sbjct: 481 ITNEMVAGQPKLREALDGFRQF--ARGAVLVAHNAEFDVGFLNQCAERLGLDPWE-QPVI 537 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL++AR +P +N L +L +++ + + + H AL DS + V++ M+ Sbjct: 538 DTLALARVLYPGEKNYKLKTLTQKFSVDLVNH--HRALADSEATAKVFVHMLKDAKARGI 595 Query: 184 G--FKTNEDRFFKEEKKTVP-NISLLKRDKP------------------LFTRITKEELD 222 N R + + P + ++L R++ RI K L Sbjct: 596 HNLLDMNHLRGQIDISRVRPFHATVLVRNREGLRNLYRLVSIAHTQYLHRVPRIPKSALA 655 Query: 223 EHDKTIQTLGKNAI 236 H + + +G Sbjct: 656 RHREGL-LIGTACR 668 >gi|323143749|ref|ZP_08078417.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT 12066] gi|322416462|gb|EFY07128.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT 12066] Length = 309 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 75/198 (37%), Positives = 119/198 (60%), Gaps = 9/198 (4%) Query: 7 MRKIVFDIETTG----LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +R++ D ETTG + RIIE+G VE+++ T R Q F+ P+ R EA ++ Sbjct: 4 LRQVALDTETTGKSDDGTTGTHRIIEVGCVEIINRRLTGRQLQFFVNPD-RHIDEEATEV 62 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFIN--AELQRINKDPLDP 120 HGITDE L DKP F+ + +E DF + +E + HNAKFD F++ +L ++N+ D Sbjct: 63 HGITDEMLADKPHFADVANELIDFI--RGSELLIHNAKFDSAFLDKEWDLLKLNEHTKDM 120 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +I+DT+ +AR+ +P+++ +L++LC Y I S R+ HGALLD+ LL++VY+ M G S Sbjct: 121 CKIVDTVELARKINPNNQANLDNLCSIYDIDNSRRTVHGALLDAQLLAEVYLAMTGGQSS 180 Query: 181 INFGFKTNEDRFFKEEKK 198 +FG + E+ Sbjct: 181 FDFGEDSVNALSRHWERP 198 >gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168] gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168] gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. JH642] gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY] gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis] gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 1437 Score = 188 bits (477), Expect = 8e-46, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 104/185 (56%), Gaps = 9/185 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ R S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P + +F ++ + +AHNA FD+GF+N +++ + + +IDTL Sbjct: 479 MLQDAPDVVDVIRDFREWIGDD--ILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185 + R +P + LN+LCK++ I ++ H A+ D+ + + +KM+ ++ I + Sbjct: 537 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAAEKGIQYHD 594 Query: 186 KTNED 190 + NE+ Sbjct: 595 ELNEN 599 >gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5] gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5] Length = 1437 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 104/185 (56%), Gaps = 9/185 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ R S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P + +F ++ + +AHNA FD+GF+N +++ + + +IDTL Sbjct: 479 MLQDAPDVVDVIRDFREWIGDD--ILVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185 + R +P + LN+LCK++ I ++ H A+ D+ + + +KM+ ++ I + Sbjct: 537 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAAEKGIQYHD 594 Query: 186 KTNED 190 + NE+ Sbjct: 595 ELNEN 599 >gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195] Length = 1437 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 104/185 (56%), Gaps = 9/185 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ R S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P + +F ++ + +AHNA FD+GF+N +++ + + +IDTL Sbjct: 479 MLQDAPDVVDVIRDFREWIGDD--ILVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185 + R +P + LN+LCK++ I ++ H A+ D+ + + +KM+ ++ I + Sbjct: 537 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAAEKGIQYHD 594 Query: 186 KTNED 190 + NE+ Sbjct: 595 ELNEN 599 >gi|71065393|ref|YP_264120.1| bifunctional ribonuclease HI/DNA polymerase III, epsilon subunit [Psychrobacter arcticus 273-4] gi|71038378|gb|AAZ18686.1| bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit [Psychrobacter arcticus 273-4] Length = 527 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 71/190 (37%), Positives = 111/190 (58%), Gaps = 5/190 (2%) Query: 3 RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R R+++ D ETTGLD K DRIIE+G VE++ T V++ P R E ++ Sbjct: 297 RHESDRQLIMDTETTGLDPLKGDRIIEVGIVEMIGRKFTGEKLHVYINPQ-RGMDEEVIR 355 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDP 120 +HGI++ FL DKP+F + +DF + AE IAHNA FD+ F+N E ++ D + Sbjct: 356 IHGISEAFLTDKPTFDQVAQSLYDFMD--GAEIIAHNASFDMNFLNMEFAKVGMHDFAER 413 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R+ D+L +A++++P +N L++L +R + R+ HGALLDS +L++VY+ M G Sbjct: 414 VRVTDSLVMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEILAEVYLTMTGGQVT 473 Query: 181 INFGFKTNED 190 + T D Sbjct: 474 LGIEDDTQAD 483 >gi|291519550|emb|CBK74771.1| DNA polymerase III catalytic subunit, PolC type [Butyrivibrio fibrisolvens 16/4] Length = 1480 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 98/197 (49%), Gaps = 9/197 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + KN++IIEIGAV+ D + F F+ P +L ITD+ Sbjct: 448 YVVFDIETTGFNPKNNKIIEIGAVKFKDGEIVD-HFSEFINPE-VPIPYRITELTSITDD 505 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ I +F +F + +AHNA FD FI +++ + +DT+ Sbjct: 506 MVLDAPTIDVILPKFMEFC--KGTVLVAHNAGFDTSFIRYNCKQLGLEY--DYTHVDTVE 561 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR HP ++R +L+++CK + H H A+ D+ + + ++ K +V N T Sbjct: 562 VARYLHPNNARFNLDAVCKLENVVNEHH--HRAVADAEVTAKIFEKFIVKLEAENIHTLT 619 Query: 188 NEDRFFKEEKKTVPNIS 204 + K + + + + Sbjct: 620 ELNDKAKPKAEQIKKMK 636 >gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM 2522] gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM 2522] Length = 1434 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 66/197 (33%), Positives = 108/197 (54%), Gaps = 10/197 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL + + IIE+ AV++ + +R F+ F P+ K +P + L GITD+ Sbjct: 420 YIVFDVETTGLSAVYNTIIELAAVKVKNGEIVDR-FESFANPH-EKLTPLIIDLTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P + +F ++ +A +AHNA FD+GFINA Q+I + +IDTL Sbjct: 478 MVENAPEVDDVLKDFHEWIG--DATLVAHNASFDMGFINAGFQKIGYGHA-TNPVIDTLE 534 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF--GF 185 + R +P+ +N LN+LCK++ I + + H A+ D+ + KM+ + F Sbjct: 535 LGRLLYPTFKNYRLNTLCKKFNIELV--AHHRAIYDAEATGHLLWKMVKDATSQGIMKHF 592 Query: 186 KTNEDRFFKEEKKTVPN 202 + NE + KK PN Sbjct: 593 QLNEQTSKDDYKKQRPN 609 >gi|196003864|ref|XP_002111799.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens] gi|190585698|gb|EDV25766.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens] Length = 289 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 121/232 (52%), Gaps = 7/232 (3%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +R++V D ETTGL + RIIEIG +EL+D+ T+RTFQ ++ P S A + Sbjct: 9 NLSPLREVVLDTETTGLSVRTGHRIIEIGCLELIDHQPTSRTFQCYINPK-FPVSERAFE 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H ++++FL+ P+F I +F DF E I HN FD+ FIN E Q++N + Sbjct: 68 VHHLSNKFLEGFPTFDGIVQDFRDFIQED--TLIIHNGHFDIKFINNEFQKLNIPEISFE 125 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK-HGALLDSHLLSDVYIKMMVGGSQ 180 R+IDT+ +AR+ +P L+SLC R+ I S RS HGAL D LL VY K++ Q Sbjct: 126 RVIDTMLMARKLYPRQPASLDSLCDRFNIDKSSRSLGHGALTDVKLLQLVYAKLLK--DQ 183 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 G + K V + K+ +P T E +++G Sbjct: 184 DALGLNVINQSATQTSKSIVNKTDMSKQHRPAQTAKVDTEKVASCTNAKSIG 235 >gi|158320555|ref|YP_001513062.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs] gi|158140754|gb|ABW19066.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs] Length = 1441 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 9/172 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + I+FDIETTGL SKND I EIGA+++ + + +F + P R + ++L GI Sbjct: 423 EDEFIIFDIETTGLSSKNDEITEIGAIKIKNNRIID-SFSTLINPE-RSIPEKIVELTGI 480 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D+ +KD+P+ + +F DF + +AHN+ FD GFI + +R + ID Sbjct: 481 SDDMVKDQPTIEVVLPQFLDFIG--DCPVVAHNSDFDTGFIRDKAERYELSF--DNIAID 536 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 TL +AR P ++ LN + K I++ + H A+ D+ ++++IK + Sbjct: 537 TLKLARALLPDLKKHRLNVIAKELNISLENH--HRAVDDAKATAEIFIKFVE 586 >gi|332976806|gb|EGK13634.1| DNA polymerase III PolC [Desmospora sp. 8437] Length = 1099 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 99/171 (57%), Gaps = 8/171 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFD+ETTGL + +D IIE+ AV++ D +R F+ F+ P+ RK + +L GI Sbjct: 413 EDTYVVFDVETTGLSAVHDEIIELAAVKVKDGEIIDR-FESFINPH-RKLTATITELTGI 470 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE + D P S + + +F + +AHNA+FD+GF+ A ++ P+D ++D Sbjct: 471 TDEMVVDAPELSEVLPRYLEFI--EGTVLVAHNARFDMGFLQAACKKTGCQPVD-HPVLD 527 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL + R +P +N LN+LCK++ I ++ H A+ D+ + +M+ Sbjct: 528 TLELGRFLYPRLKNHRLNTLCKQFDIELTQH--HRAIYDAEATGFLLWRML 576 >gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1] gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1] Length = 1436 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 8/192 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFD+ETTGL + + IIE+ AV++ D +R F F P+ S ++L GI Sbjct: 418 EDTYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FTSFANPH-HPLSMTTIELTGI 475 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ LKD P + +F+D+ ++ +AHNA FD+GF+N +I + + +ID Sbjct: 476 TDDMLKDAPDVEEVLRQFYDWIG--DSVLVAHNASFDIGFLNVGFAKIGLGKV-TNPVID 532 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 TL +AR +P +N LN+LCK++ I ++ H A+ D+ + ++M+ + Sbjct: 533 TLELARFLYPDLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLLMRMLKDAQERGIL 590 Query: 185 FKTNEDRFFKEE 196 + ++ KEE Sbjct: 591 YHDELNKRSKEE 602 >gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271] gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271] Length = 1435 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 9/191 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL S DRIIE+ AV++ + + TF+ F+ P G S +L GITD Sbjct: 420 YVVFDVETTGLSSVYDRIIELAAVKMRNGEVID-TFEAFINP-GYHLSAMITELTGITDA 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + + + F +F ++ +AHNA FD+GF+N R+ P+ +IDTL Sbjct: 478 MLADAPPEAEVMARFAEF--SKDTILVAHNASFDMGFLNKTYARLGM-PVPDQPVIDTLE 534 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R +P R + LN L K YG+T+ H A+ DS V K++ ++ +G Sbjct: 535 LSRLVNPDMRSHRLNVLAKHYGVTLEQH--HRAVYDSETTGYVCYKLL-DQAKEQYGMVR 591 Query: 188 NEDRFFKEEKK 198 +E + K Sbjct: 592 HEQLNEQVGKG 602 >gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942] gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942] Length = 1437 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 104/190 (54%), Gaps = 9/190 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + IVFD+ETTGL + D IIE+ AV++ ++ F+ F P+ S ++L Sbjct: 416 LEEDTYIVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FERFANPH-HPLSATTIELT 473 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD+ ++D P + +F ++ ++ +AHNA FD+GF+N +R+ K + + Sbjct: 474 GITDDMVRDAPDVIDVVRDFREWIDDD--ILVAHNASFDMGFLNVAYKRLLKVEKAQNPV 531 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-- 180 IDTL + R +P + LN+LCK++ I ++ H A+ D+ + +KM+ ++ Sbjct: 532 IDTLELGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLLLKMLKDAAEKD 589 Query: 181 INFGFKTNED 190 I + + NE+ Sbjct: 590 IQYHDQLNEN 599 >gi|331085480|ref|ZP_08334565.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407718|gb|EGG87216.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1492 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + DRIIEIGAV++ D + +R F F+ P E +L ITD+ Sbjct: 463 FVVFDIETTGFSAAEDRIIEIGAVKITDGAIVDR-FSTFVNPE-VPIPFEIQQLTHITDD 520 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P F DF E + +AHNA FDVGFI R+ + +DT+ Sbjct: 521 MVLEAPKIEEALPAFLDFVGE--SALVAHNAGFDVGFIEQNCVRLGRS--RTFTSVDTVG 576 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +AR P+ S+ LN + K I++ + H A+ D+ +++Y+K + + Sbjct: 577 LARVLLPTLSKYKLNIVAKALNISLENH--HRAVDDAAATAEIYVKFIEMLKERGM 630 >gi|325660790|ref|ZP_08149418.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] gi|325472864|gb|EGC76074.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] Length = 1492 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + DRIIEIGAV++ D + +R F F+ P E +L ITD+ Sbjct: 463 FVVFDIETTGFSAAEDRIIEIGAVKITDGAIVDR-FSTFVNPE-VPIPFEIQQLTHITDD 520 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P F DF E + +AHNA FDVGFI R+ + +DT+ Sbjct: 521 MVLEAPKIEEALPAFLDFVGE--SALVAHNAGFDVGFIEQNCVRLGRS--RTFTSVDTVG 576 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +AR P+ S+ LN + K I++ + H A+ D+ +++Y+K + + Sbjct: 577 LARVLLPTLSKYKLNIVAKALNISLENH--HRAVDDAAATAEIYVKFIEMLKERGM 630 >gi|218133709|ref|ZP_03462513.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC 43243] gi|217991084|gb|EEC57090.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC 43243] Length = 1403 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 9/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFDIETTG ++NDRIIEIGAV++ D +R F F+ P + KL I D Sbjct: 372 KYVVFDIETTGFSAENDRIIEIGAVKIEDGEIIDR-FSTFVNPE-VPIPFKIEKLTSIND 429 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P + EF +F + +AHNA+FD GFI + + + ++DTL Sbjct: 430 SMVMGAPKIEQVLPEFLEFC--EGCVVVAHNAEFDTGFIRNKAAKQGMTF--DNTVVDTL 485 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +IAR P N L++L K + + ++ S H A+ D+ + +++KM Sbjct: 486 AIARFLVPRLHNFKLDTLTKHFNVVLT--SHHRAVDDAEATAGIFLKM 531 >gi|315651645|ref|ZP_07904656.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986] gi|315486099|gb|EFU76470.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986] Length = 1483 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTG +KND I EIGAV++++ +R F F+ P R +L I+D Sbjct: 459 FIVFDIETTGFSAKNDAITEIGAVKVVNGEIVDR-FSTFVNPK-RPIPFRIEELTHISDA 516 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P I +F DF ++ +AHNA FD GFI +RIN + IIDT++ Sbjct: 517 MVVNAPVIEEILPKFLDFC--EDYTIVAHNAGFDTGFIRENAKRINAE--YNPSIIDTVA 572 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P R L+++CK I++ H A+ D+ ++++++ + Sbjct: 573 MARLLLPDLNRFKLDTVCKALNISLEGH--HRAVNDAEATAEIWVEFI 618 >gi|93005683|ref|YP_580120.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis K5] gi|92393361|gb|ABE74636.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis K5] Length = 532 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 5/185 (2%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+++ D ETTGLD K DR+IE+G VE++ T V++ P R E +++HGI+ Sbjct: 307 RQLIMDTETTGLDPQKGDRVIEVGIVEMIGRKFTGEKLHVYINPQ-RGMDEEVIRIHGIS 365 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-KDPLDPSRIID 125 + FL DKP+F + +DF + AE IAHNA FD+ F+N E ++ D + ++ D Sbjct: 366 EAFLTDKPTFDQVAQSLYDFMD--GAEIIAHNASFDMNFLNMEFAKVGMHDFAERVKVTD 423 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +L +A++++P +N L++L +R + R+ HGALLDS +L++VY+ M G + Sbjct: 424 SLVMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEILAEVYLAMTGGQVTLGIED 483 Query: 186 KTNED 190 D Sbjct: 484 DAQAD 488 >gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758] gi|225207389|gb|EEG89743.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758] Length = 1535 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 94/176 (53%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + DRIIEIGAV++ D T++ F F+ P R +L ITDE Sbjct: 489 YVVFDIETTGFSAVTDRIIEIGAVKVEDGKITDK-FSTFVNPK-RPIPFRITELTSITDE 546 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P +I +F +F +A +AHNA FDVGFI +R + +DT++ Sbjct: 547 MVIDSPDIETILPQFIEFIG--DAVLVAHNASFDVGFIEQNCKRQKIEA--DFTYVDTVA 602 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +AR P+ R L+++ K I++ + H A+ D+ +++++K + + Sbjct: 603 LARVLLPALNRFKLDTVAKALNISLENH--HRAVDDAGCTAEIFVKFVQMLKEREL 656 >gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7] gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM 7] gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208] gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3] Length = 1437 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 104/190 (54%), Gaps = 9/190 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ S ++L Sbjct: 416 LEEDTYVVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FEAFANPH-HPLSATTIELT 473 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD+ ++D P + +F ++ + +AHNA FD+GF+N +R+ K + + Sbjct: 474 GITDDMVRDAPDVVDVVRDFKEWIGDD--VLVAHNASFDMGFLNVAYKRLLKTEKAKNPV 531 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-- 180 IDTL +AR +P + LN+LCK++ I ++ H A+ D+ + +KM+ ++ Sbjct: 532 IDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRAVFDAEATGYLLLKMLKDAAEKD 589 Query: 181 INFGFKTNED 190 I + + NE+ Sbjct: 590 IFYHDQLNEN 599 >gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13] Length = 1437 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 10/197 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ +R F+ F P+ S + L GITD+ Sbjct: 422 YVVFDVETTGLSAMYDTIIELAAVKVKGGEIIDR-FESFANPH-HPLSATTINLTGITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P + +F ++ Q+ +AHNA FD+GF+N QRI + +IDTL Sbjct: 480 MVQNAPEVGDVLKQFSEWM--QDDILVAHNASFDMGFLNIGFQRIGLGKA-KNPVIDTLE 536 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFGF 185 + R PS +N LN+LCK++ I ++ H A+ D+ + +KM+ I F Sbjct: 537 LGRLLFPSLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLLVKMLKDAFEKGITFHD 594 Query: 186 KTNEDRFFKEEKKTVPN 202 + NE + K Sbjct: 595 ELNEHSGTTDAYKRARP 611 >gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580] gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580] gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC 14580] gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580] Length = 1438 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 9/185 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ R F+ F P+ R S ++L GITD+ Sbjct: 422 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIER-FERFANPH-RPLSATIIELTGITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P + +F ++ + +AHNA FD+GFIN +R+ + +IDTL Sbjct: 480 MLKDAPEVEEVIRDFKEWVGDH--TLVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLE 537 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN--FGF 185 + R +P + LN+LCK++ I ++ H A+ D+ + +KM+ ++ N + Sbjct: 538 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATGYLLVKMLKDAAEKNILYHD 595 Query: 186 KTNED 190 + NE+ Sbjct: 596 QLNEN 600 >gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna ACS-171-V-Col3] gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna ACS-171-V-Col3] Length = 1421 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 9/186 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N +VFDIETTGL + ++I EIGAV+++D + F + P + +L Sbjct: 397 MNLREFVVFDIETTGLSNATEKITEIGAVKIVDNKIVDE-FNQLINPEI-PIPEKITELT 454 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 IT+E +KD P ++ EF F + IAHNA FD+GFI + +P+ Sbjct: 455 SITNEMVKDMPKIDAVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCIDLGINPV--RTY 510 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL+ AR + + L++L K+Y + + + H A D+ +V+I M+ Q Sbjct: 511 IDTLAFARALESHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMVNNLEQRG 568 Query: 183 FGFKTN 188 F F N Sbjct: 569 FKFDIN 574 >gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2] gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2] Length = 1463 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 9/185 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ R F+ F P+ R S ++L GITD+ Sbjct: 422 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIER-FERFANPH-RPLSATIIELTGITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P + +F ++ + +AHNA FD+GFIN +R+ + +IDTL Sbjct: 480 MLKDAPEVEEVIRDFKEWVGDH--TLVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLE 537 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN--FGF 185 + R +P + LN+LCK++ I ++ H A+ D+ + +KM+ ++ N + Sbjct: 538 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATGYLLVKMLKDAAEKNILYHD 595 Query: 186 KTNED 190 + NE+ Sbjct: 596 QLNEN 600 >gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42] gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42] Length = 1437 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 104/190 (54%), Gaps = 9/190 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ S ++L Sbjct: 416 LEEDTYVVFDVETTGLSAVYDTIIELAAVKIRGGEIIDK-FEAFANPH-HPLSATTIELT 473 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD+ ++D P + +F ++ + +AHNA FD+GF+N +R+ K + + Sbjct: 474 GITDDMVRDAPDVVDVVRDFKEWIGDD--VLVAHNASFDMGFLNVAYKRLLKTEKAKNPV 531 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ-- 180 IDTL +AR +P + LN+LCK++ I ++ H A+ D+ + +KM+ ++ Sbjct: 532 IDTLELARFLYPEFKNHRLNTLCKKFDIELTQH--HRAVFDAEATGYLLLKMLKDAAEKD 589 Query: 181 INFGFKTNED 190 I + + NE+ Sbjct: 590 IFYHDQLNEN 599 >gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1410 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 60/197 (30%), Positives = 107/197 (54%), Gaps = 10/197 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL S ND IIEIGAV++ D + TF+ F+ P S KL GITD+ Sbjct: 399 FVVFDIETTGLSSINDSIIEIGAVKIKDCQIVD-TFETFVNPQIH-ISNFITKLTGITDD 456 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K P + +F +F + + +AHNA FDV FI + + + + +P ++DTL Sbjct: 457 MVKRYPPIDEVLPKFLEFI--KGSTLVAHNANFDVTFIKTKAKNLGIEVDNP--VLDTLE 512 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + + +N L+++ + G+++ + H A+ D+ +++++K + + K Sbjct: 513 LSRHMYENLKNYKLDTVAQHLGVSLENH--HRAVDDARATAEIFLKSINKLKENGIE-KV 569 Query: 188 NEDRFFKEEKKTVPNIS 204 NE + + K + + Sbjct: 570 NEINSYLKNKVDIKKMP 586 >gi|194015013|ref|ZP_03053630.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus pumilus ATCC 7061] gi|194014039|gb|EDW23604.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus pumilus ATCC 7061] Length = 1437 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 102/185 (55%), Gaps = 9/185 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ +R F+ F P+ S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDR-FEAFANPH-HPLSATTIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + +F ++ + +AHNA FD+GF+N +R+ K + +IDTL Sbjct: 479 MVKDAPDVVDVVRDFKEWIGQD--ILVAHNASFDMGFLNTAYKRLLKTDKASNPVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185 + R +P + LN+LCK++ I ++ H A+ D+ + +KM+ ++ I + Sbjct: 537 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLMLKMLKDAAEKDIAYHD 594 Query: 186 KTNED 190 + NE+ Sbjct: 595 QLNEN 599 >gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70] gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70] Length = 1435 Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats. Identities = 59/194 (30%), Positives = 105/194 (54%), Gaps = 8/194 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +VFD+ETTGL + + IIE+ AV++ D +R F F P+ S ++L Sbjct: 415 LSEDTYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FTSFANPH-HPLSITTIELT 472 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD+ LKD P + +F+D+ ++ +AHNA FD+GF+N ++ + + + Sbjct: 473 GITDDMLKDAPDVEEVLRQFYDWMG--DSILVAHNASFDIGFLNVGFTKLGLGKV-TNPV 529 Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL +AR +P +N LN+LCK++ I ++ H A+ D+ + ++++ + Sbjct: 530 IDTLELARFLYPELKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLLMRLLKDAQERG 587 Query: 183 FGFKTNEDRFFKEE 196 + + KEE Sbjct: 588 ILYHDELNERSKEE 601 >gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1] gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type) [Anoxybacillus flavithermus WK1] Length = 1430 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 110/210 (52%), Gaps = 15/210 (7%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +VFD+ETTGL + D IIE+ AV++ + +R F+ F P+ S ++L Sbjct: 409 RLMDDTFVVFDVETTGLSAVYDTIIELAAVKVKNGEIIDR-FESFANPH-HPLSATTIEL 466 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 ITD+ LKD P + +F+ + + + +AHNA FD+GF+NA ++IN+ + + Sbjct: 467 TKITDDMLKDAPDVEEVLEKFYHWID--DCVLVAHNATFDIGFLNAGFKKINRGKV-TNP 523 Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR +P +N LN+LCK++ I ++ H A+ D+ + I ++ + Sbjct: 524 VIDTLELARYLYPELKNHRLNTLCKKFNIELTQH--HRAIYDAEATGYLLIHLLKELDEK 581 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + + KE+ +R +P Sbjct: 582 GIQYMDQLNEASKEQGA-------FQRSRP 604 >gi|157692337|ref|YP_001486799.1| DNA polymerase III PolC [Bacillus pumilus SAFR-032] gi|157681095|gb|ABV62239.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus SAFR-032] Length = 1437 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 102/185 (55%), Gaps = 9/185 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ +R F+ F P+ S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDR-FEAFANPH-HPLSATTIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P + +F ++ + +AHNA FD+GF+N +R+ K + +IDTL Sbjct: 479 MVRDAPDVVDVVRDFKEWIGQD--ILVAHNASFDMGFLNTAYKRLLKTDKASNPVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185 + R +P + LN+LCK++ I ++ H A+ D+ + +KM+ ++ I + Sbjct: 537 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDAEATGYLMLKMLKDAAEKDIAYHD 594 Query: 186 KTNED 190 + NE+ Sbjct: 595 QLNEN 599 >gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 1398 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 16/201 (7%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + IVFD+ETTG ++ND I EIGA++ ++ + F + P R + KL GIT+ Sbjct: 381 KYIVFDLETTGFSNRNDAITEIGAIK-VENGEIVEEFSQLINPE-RPIPEKIQKLTGITN 438 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + DKP+ S + +F DF +++ +AHN+ FD GF+ + N IDT+ Sbjct: 439 EMVIDKPTISEVLPKFLDFC--KDSILVAHNSDFDTGFVREKASENNLP--YDFDAIDTV 494 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++R P + + LN++ K +++ + H A+ D+ + +++ + K Sbjct: 495 ILSRLLMPDLKNHKLNTIAKELNVSLENH--HRAVDDATATAQIFLNFISK-------LK 545 Query: 187 TNEDRFFKEEKKTVPNISLLK 207 E F E + + +I K Sbjct: 546 AMEIENFNEINEKIKSIDTSK 566 >gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516] gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516] Length = 1421 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 9/181 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL + ++I EIGAV+++D + F + P + +L IT+E Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDNQIVDE-FNQLINPEI-PIPEKITELTSITNE 459 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + EF F + IAHNA FD+GFI + +P+ IDTL+ Sbjct: 460 MVKDMPKIEEVLPEFLKFVG--DCTLIAHNADFDMGFIKKNCLDLRINPI--RTYIDTLA 515 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR P + + L++L K+Y + + + H A D+ +V+I M+ + F Sbjct: 516 FARALEPHLKNHKLDTLTKKYNVNLFNH--HRACDDARATGEVFICMVKDLEKRGVKFDI 573 Query: 188 N 188 N Sbjct: 574 N 574 >gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386] gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC 33386] Length = 1421 Score = 184 bits (468), Expect = 9e-45, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 96/176 (54%), Gaps = 11/176 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI + + I+FDIETTG D D+IIEIGAV+L + +R F F+ P E + Sbjct: 393 MIEQEE--YIIFDIETTGFDPYKDKIIEIGAVKLKGRNIIDR-FSAFVNPE-VPIPEEII 448 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 KL ITD+ +KD ++ F +F + +AHNAKFDVGF+ + +++ + L Sbjct: 449 KLTNITDDMVKDAELIDTVLPRFLEFCG--DCTMVAHNAKFDVGFLTQKARQLELEFLP- 505 Query: 121 SRIIDTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +IDTL AR R +L +L + I++ + H A+ D+ + ++IKM+ Sbjct: 506 -SVIDTLYWARVLITDLKRFNLKALANYFNISLDNH--HRAVDDAEATASIFIKML 558 >gi|189183653|ref|YP_001937438.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Ikeda] gi|189180424|dbj|BAG40204.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Ikeda] Length = 222 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 88/230 (38%), Positives = 128/230 (55%), Gaps = 12/230 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 RKIV D ET+GLD K RIIEIGAVEL D ++ TF ++ P R S EA K+HG Sbjct: 2 QRKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPE-RDISKEAYKVHG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ++ +FL DKP F I EF F + A+ I HNA FD+ F+N+EL RI K + + +I Sbjct: 61 LSRDFLSDKPKFREIVDEFLQFID--GAQLIMHNANFDMQFLNSELFRIRKSAIPNTCVI 118 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR++ P R +L++LC ++ I S R HGAL D+ LL+ VY +MM G + Sbjct: 119 DTLTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRMMRGMQVVLLD 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + T N + + T +E+ +H + + + K+ Sbjct: 179 DTKHNKEIIISNCATNINNT-------VVVEPTCDEIIQHQQLLSKIHKH 221 >gi|331090692|ref|ZP_08339541.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] gi|330400106|gb|EGG79757.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] Length = 1487 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 9/197 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG S D+IIEIGAV++ + +R + F+ P E KL ITD Sbjct: 452 FVVFDIETTGFSSVKDKIIEIGAVKVENGKIVSR-YSTFVNPE-VPIPFEITKLTSITDA 509 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P ++ EF ++ +A +AHNA FDVGFI +R+ + S +DT++ Sbjct: 510 MVIDAPKIETVLPEFMEYVG--DAVLVAHNAGFDVGFIEENCRRLGMERKLTS--VDTVA 565 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P+ SR LN + K GI++ + H A+ D+ +++++K + + Sbjct: 566 LARVLLPTLSRYKLNIVAKTLGISLENH--HRAVDDAGATAEIFVKFVEMLKEREITTLK 623 Query: 188 NEDRFFKEEKKTVPNIS 204 + F + + Sbjct: 624 GVNEFGAMNPDAIRKMP 640 >gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus CCSD1] gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus CCSD1] Length = 1407 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 106/201 (52%), Gaps = 9/201 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + VFDIETTGL + ND IIEIGAV++ + + TF+ F+ P S KL GI Sbjct: 391 EDEFTVFDIETTGLSNINDEIIEIGAVKIKEGKIID-TFETFVNPKI-PISSFITKLTGI 448 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +KD PS I +F +F N+ +AHNA FDV FI ++ ++ N + + ++D Sbjct: 449 DESMVKDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLD 504 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 TL ++R + +N L++L + + + H H A+ D+ ++++IK + ++ Sbjct: 505 TLELSRHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDAMATAEIFIKTIDRLKELGVE 562 Query: 185 FKTNEDRFFKEEKKTVPNISL 205 + + KE + + + + Sbjct: 563 KVKDINAILKESEVDIRKLPV 583 >gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1407 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 105/201 (52%), Gaps = 9/201 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + VFDIETTGL + ND IIEIGAV++ + + TF+ F+ P S KL GI Sbjct: 391 EDEFTVFDIETTGLSNINDEIIEIGAVKIKEGKIID-TFETFVNPKI-PISSFITKLTGI 448 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +KD PS I +F +F N+ +AHNA FDV FI ++ ++ N + + ++D Sbjct: 449 DESMVKDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLD 504 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 TL ++R + +N L++L + + H H A+ D+ ++++IK + ++ Sbjct: 505 TLELSRHLYKDLKNYKLDTLADHLQVKLEHH--HRAVDDAMATAEIFIKTIDRLKELGVE 562 Query: 185 FKTNEDRFFKEEKKTVPNISL 205 + + KE + + + + Sbjct: 563 KVKDINAILKESEVDIRKLPV 583 >gi|167759386|ref|ZP_02431513.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704] gi|167662943|gb|EDS07073.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704] Length = 1499 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 9/197 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG D+IIEIGAV++ + T R F F+ P +L ITD+ Sbjct: 462 YVVFDLETTGFSPIKDKIIEIGAVKVENGKITER-FSTFVNPKI-PIPFRITQLTSITDQ 519 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P ++ +F +F +A +AHNA FDVGFI + +D + +DT++ Sbjct: 520 MVMDAPDIDTVLPQFLEFIG--DAVLVAHNASFDVGFIEQNCR--YQDIVPNFTSVDTVA 575 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P+ S+ LN + I++ + H A+ D+ +++++K + + N Sbjct: 576 MARILLPTLSKFKLNVVANALHISLENH--HRAVDDAGATAEIFVKFVEMLKERNINDLA 633 Query: 188 NEDRFFKEEKKTVPNIS 204 ++F + + Sbjct: 634 RLNQFGSNNADAIKKLP 650 >gi|210622608|ref|ZP_03293268.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275] gi|210154109|gb|EEA85115.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275] Length = 1426 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 94/169 (55%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG + ND+I EIGAV++ D+ +R F + P + S +L GIT+E Sbjct: 412 FVVFDLETTGFSNINDKITEIGAVKIRDFEIVDR-FSELVNPE-KDISYRVQELTGITNE 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KDKP+ I +F +F + +AHNA FD GFI + + + ++ +DTL Sbjct: 470 MVKDKPTIEEILPKFMEFVGDD--VLVAHNADFDTGFIMQKCKEQGLE--YKNKKVDTLM 525 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +AR P+ R L+ + K G+ + + H A+ D+ ++++IK + Sbjct: 526 LARIMLPNLKRYKLDKVAKEVGVQLLNH--HRAVDDAEATANIFIKFLG 572 >gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW 200] gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW 200] Length = 1407 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 105/201 (52%), Gaps = 9/201 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + VFDIETTGL + ND IIEIGAV++ + + TF+ F+ P S KL GI Sbjct: 391 EDEFTVFDIETTGLSNINDEIIEIGAVKIKEGKIID-TFETFVNPKI-PISSFITKLTGI 448 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +KD PS I +F +F N+ +AHNA FDV FI ++ ++ N + + ++D Sbjct: 449 DESMVKDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLD 504 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 TL ++R + +N L++L + + H H A+ D+ ++++IK + ++ Sbjct: 505 TLELSRHLYKDLKNYKLDTLADHLQVKLEHH--HRAVDDAMATAEIFIKTIDRLKELGVE 562 Query: 185 FKTNEDRFFKEEKKTVPNISL 205 + + KE + + + + Sbjct: 563 KVKDINAILKESEVDIRKLPV 583 >gi|154502558|ref|ZP_02039618.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149] gi|153796750|gb|EDN79170.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149] Length = 1503 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTG + D+IIEIGAV++ D + + F F+ P R E +L ITDE Sbjct: 467 YIVFDIETTGFSAIKDKIIEIGAVKVKDGAIVEK-FSTFVNPK-RPIPFEITQLTSITDE 524 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P S+ EF +F + +AHNA FDVGFI + +P +DT++ Sbjct: 525 MVLDAPDIESVLPEFLEFVG--DGVLVAHNAGFDVGFIEQNCRYQEIEP--DFVSVDTVA 580 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +AR P+ S+ LN + K GI++ + H A+ D+ +++++K + N Sbjct: 581 LARVLLPTLSKYKLNIVAKALGISLENH--HRAVDDAGATAEIFVKFVEMLKDRNI 634 >gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514] gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561] gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513] gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514] gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561] gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513] Length = 1407 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 106/201 (52%), Gaps = 9/201 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + VFDIETTGL + ND IIEIGAV++ + + TF+ F+ P S KL GI Sbjct: 391 EDEFTVFDIETTGLSNINDEIIEIGAVKIKEGKIID-TFETFVNPKI-PISSFITKLTGI 448 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +KD PS I +F +F N+ +AHNA FDV FI ++ ++ N + + ++D Sbjct: 449 DESMVKDAPSIEEILPKFLEF--ASNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLD 504 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 TL ++R + +N L++L + + + H H A+ D+ ++++IK + ++ Sbjct: 505 TLELSRHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDAMATAEIFIKTIDRLKELGVE 562 Query: 185 FKTNEDRFFKEEKKTVPNISL 205 + + KE + + + + Sbjct: 563 KVKDINAILKESEVDIRKLPV 583 >gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis] Length = 1437 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 102/185 (55%), Gaps = 9/185 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ R S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDK-FEAFANPH-RPLSATIIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P + +F + +AHNA FD+GF+N +++ + + +IDTL Sbjct: 479 MLQDAPDVVDVIRDFRVRIGDD--ILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185 + R +P + LN+LCK++ I ++ H A+ D+ + + +KM+ ++ I + Sbjct: 537 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLKDAAEKGIQYHD 594 Query: 186 KTNED 190 + NE+ Sbjct: 595 ELNEN 599 >gi|332982461|ref|YP_004463902.1| DNA polymerase III catalytic subunit, PolC type [Mahella australiensis 50-1 BON] gi|332700139|gb|AEE97080.1| DNA polymerase III catalytic subunit, PolC type [Mahella australiensis 50-1 BON] Length = 1427 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 9/188 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTGL++ D+IIEIGAV + D + F F+ P+ P + L GITD+ Sbjct: 416 VVLDIETTGLNAGTDKIIEIGAVRIKDGKYKDE-FSSFINPH-VPIPPSIVNLTGITDDM 473 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P + F +F +A +AHNA+FD+GFI Q+ N +P ++DTL++ Sbjct: 474 VSNAPDEGDVLQRFMEFAG--DAVLVAHNAQFDMGFIRQHGQKYNLKFANP--VLDTLTL 529 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 AR+ ++ L++L I + + H A+ D+ +++ + M S++ F ++ Sbjct: 530 ARQLFKGLKHYKLDTLAHHLHIDMDNH--HRAVDDARTAAEILFRCMDKLSEMGCQFLSD 587 Query: 189 EDRFFKEE 196 +R F Sbjct: 588 LNRVFGSS 595 >gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9] gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9] Length = 1406 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 9/198 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFDIETTGL + ND IIEIGAV++ + + TF+ F+ P S KL GI + Sbjct: 393 FTVFDIETTGLSNINDEIIEIGAVKIKEGKIID-TFETFVNPKI-PISSFITKLTGIDES 450 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD PS I +F +F N+ +AHNA FDV FI ++ ++ N + + ++DTL Sbjct: 451 MVKDAPSIEEILPKFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNV--NNTVLDTLE 506 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + +N L++L + + + H H A+ D+ ++++IK + ++ Sbjct: 507 LSRHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDARATAEIFIKTIDRLKELGVKKVK 564 Query: 188 NEDRFFKEEKKTVPNISL 205 + + +E + + + + Sbjct: 565 DINDILRESEVDIKKLPV 582 >gi|297544667|ref|YP_003676969.1| DNA polymerase III subunit alpha [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1406 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 9/198 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFDIETTGL + ND IIEIGAV++ + + TF+ F+ P S KL GI + Sbjct: 393 FTVFDIETTGLSNINDEIIEIGAVKIKEGKIID-TFETFVNPKI-PISSFITKLTGIDES 450 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD PS I +F +F N+ +AHNA FDV FI ++ ++ N + + ++DTL Sbjct: 451 MVKDAPSIEEILPKFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNV--NNTVLDTLE 506 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + +N L++L + + + H H A+ D+ ++++IK + ++ Sbjct: 507 LSRHLYKDLKNYKLDTLAEHLQVKLEHH--HRAVDDARATAEIFIKTIDRLKELGVKKVK 564 Query: 188 NEDRFFKEEKKTVPNISL 205 + + +E + + + + Sbjct: 565 DINDILRESEVDIKKLPV 582 >gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1] gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1] Length = 1443 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 52/181 (28%), Positives = 97/181 (53%), Gaps = 8/181 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ D ++ ++ F P+ S ++L GITD+ Sbjct: 428 YVVFDVETTGLSTAYDTIIELAAVKIKDGQVIDK-YESFANPH-HPLSATTIELTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P + EF F +A +AHNA FD+GF+ ++ + +IDTL Sbjct: 486 MVRNAPEVEQVIKEFHAFIG--DAIVVAHNASFDIGFLYTGYKKFGLE-DTVHPVIDTLE 542 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR +P + LN+LCK++ I ++ H A+ D+ + ++++ ++ + Sbjct: 543 LARLLYPTMKNHRLNTLCKKFNIELTQH--HRAIYDTEATGYLLLQLLKDADELAIKYHD 600 Query: 188 N 188 + Sbjct: 601 D 601 >gi|310658999|ref|YP_003936720.1| DNA polymerase III polc [Clostridium sticklandii DSM 519] gi|308825777|emb|CBH21815.1| DNA polymerase III PolC [Clostridium sticklandii] Length = 1417 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 16/225 (7%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFDIETTG + +D I EIGAV++ + + +F + P+ + +L GI Sbjct: 403 EDEYVVFDIETTGFSNTSDEITEIGAVKIRNKEIID-SFGELINPH-MPIPLKVQELTGI 460 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T++ +KDKPS + F +F + +AHN+ FD+GFI A+ +R+N ++ ID Sbjct: 461 TNDLIKDKPSIDEVLPRFLEFVGS--SILVAHNSDFDMGFIRAKAKRLNLAF--ENKDID 516 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 TL ++R P+ R+ LN + GI++ + H A+ D+ + V+IK M + Sbjct: 517 TLKLSRILLPNLKRHKLNLITNHLGISLENH--HRAVDDAKATALVFIKFMEMLIDKDIN 574 Query: 185 -FKTNEDRFFKEEKKTVP--NISLLKRD----KPLFTRITKEELD 222 F+ D+ K + K++P +I+++ RD K L+ I+ +D Sbjct: 575 TFEMVNDKLGKLDYKSIPSNHITIIARDYTGLKNLYKLISASHID 619 >gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61] gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52] gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61] gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52] Length = 1444 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 104/185 (56%), Gaps = 8/185 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R ++ +VFD+ETTGL + + IIE+ AV++ D +R F F P G S ++L Sbjct: 423 RLSEETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANP-GHPLSVTTMEL 480 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GITDE +KD P + + F D+ +A +AHNA FD+GF+NA L R+ + + + Sbjct: 481 TGITDEMVKDAPKPDEVLARFVDWAG--DATLVAHNASFDIGFLNAGLARMGRGKIA-NP 537 Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR +P +N LN+LCK++ I ++ H A+ D+ + ++++ + Sbjct: 538 VIDTLELARFLYPDLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGHLLMRLLKEAEER 595 Query: 182 NFGFK 186 F Sbjct: 596 GILFH 600 >gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus capitis SK14] gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus capitis SK14] Length = 1438 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 111/204 (54%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ +++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMIQQMTELGVHNH- 593 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 594 ------NEINKKLTNEDAYKRARP 611 >gi|313905074|ref|ZP_07838444.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6] gi|313470144|gb|EFR65476.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6] Length = 1536 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 62/214 (28%), Positives = 101/214 (47%), Gaps = 12/214 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL + +IIEIGAV +++ + F F+ P + +L ITD Sbjct: 502 YVVFDIETTGLSNLTCKIIEIGAVR-VEHGEVVSRFSEFINPE-VPIPFKITELTSITDA 559 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P I +F +F +A +AHNA FD GFI E +R D +DT++ Sbjct: 560 MVEDAPVIEEILPKFREFCG--DAVLVAHNADFDTGFIKMECERQKLDW--EFTYVDTVA 615 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P SR L+++ K G+ + H H A+ D+ + +++K + + N Sbjct: 616 MAQMLLPGLSRFKLDTVAKAVGVPLEHH--HRAVDDAECTAWIFVKFVEMLKERNI---L 670 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 + D KE I +K + +E Sbjct: 671 DLDALNKEGSVNQNAIRKMKSHHVIILAKNEEGR 704 >gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis subsp. hominis C80] gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis subsp. hominis C80] Length = 1438 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 111/204 (54%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ K S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVANH- 593 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 K+ K + N KR +P Sbjct: 594 ------KDINKKLSNEDAYKRARP 611 >gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis SK119] gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis SK119] Length = 1438 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 111/204 (54%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F PN K S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPN-EKLSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVANH- 593 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 K+ K + N KR +P Sbjct: 594 ------KDINKKLSNEDAYKRARP 611 >gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424] gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424] Length = 1446 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 108/183 (59%), Gaps = 7/183 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ + +VFD+ETTGL ++ DR+IEI AV++ + ++ + +F+ ++ P R S + Sbjct: 419 LKLREATYVVFDVETTGLSAERDRLIEIAAVKVKNGAEID-SFESYINPE-RPISELITR 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITD+ ++D P + ++F+++ +E + +AHNAKFD+GFI+ +R+ + + Sbjct: 477 LTSITDDDVRDAPVEKEVMTDFYNWLDEDD-ILVAHNAKFDLGFIDKSFERLGLEN-KNN 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 IDTL I+R ++ R+ L++L K Y + + H A+ D+ ++++IKM+ Sbjct: 535 ASIDTLFISRAENKEAKRHGLSNLAKMYKVRLVQH--HRAIYDTKATAEIFIKMLNQLYA 592 Query: 181 INF 183 + Sbjct: 593 LGI 595 >gi|153814386|ref|ZP_01967054.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756] gi|145848782|gb|EDK25700.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756] Length = 1459 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 9/197 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTG S D IIEIGAV++ D T+R F F+ P R E L ITDE Sbjct: 422 YIVFDIETTGFSSIKDAIIEIGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDE 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + +F +F + +AHNA FDVGFI + + D +DT++ Sbjct: 480 MVMDSPTIDVVLPQFLEFAG--DGVLVAHNAGFDVGFIEQNCRSLGLS--DEFVYLDTVA 535 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P+ S+ LN + K I++ + H A+ D+ +++++K + G Sbjct: 536 LARVLLPTLSKYKLNIVAKALNISLENH--HRAVDDAEATAEIFVKFTEMLKKDQVGTLK 593 Query: 188 NEDRFFKEEKKTVPNIS 204 +R+ + + Sbjct: 594 EVNRYGDRNVNAIRKMP 610 >gi|118602424|ref|YP_903639.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567363|gb|ABL02168.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 222 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 14/229 (6%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65 R IV D ETTG++ + RIIEIG E++D T N + ++ P+ +N +++++HGI Sbjct: 3 RLIVLDTETTGIEPSEGHRIIEIGCTEIVDRQITENNEYHEYIQPS--RNVGDSVRIHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRI 123 TD+FL +KP F +I F + + A I HNA FD+GF+N EL+ I D D I Sbjct: 61 TDKFLTNKPKFKAIVKTFLTYI--EGATLIIHNAPFDLGFLNHELKLIGIDERIEDKCNI 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-N 182 ID+L +++++ P + ++L++LC+R+ I S R+ HGALLD+ +L+ VY+ M G S + N Sbjct: 119 IDSLELSKQQRPGTLHNLDALCRRFEINSSARTVHGALLDAKILAQVYLAMTGGQSTLFN 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 NE + I +K K+EL H + + Sbjct: 179 NEQTINEQANTNNIIRVERAIGKIK-----VVYANKQELAAHASYFEKI 222 >gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590] gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590] Length = 1438 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 112/204 (54%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ +K S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVYDGEIIDK-FERFSNPH-QKLSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +RI P + +IDTL Sbjct: 480 MLTDAPEIDEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERIGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMLQQMKELGVSNH- 593 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 K+ K + N KR +P Sbjct: 594 ------KDINKKLSNEDAYKRARP 611 >gi|268316801|ref|YP_003290520.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252] gi|262334335|gb|ACY48132.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252] Length = 565 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 104/236 (44%), Gaps = 18/236 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ + + +V D ETTG DRIIE+ AV + + F + P GR P + Sbjct: 1 MQLDAVSFVVVDTETTGSGPA-DRIIELAAVR-VQGGRIVERFATLINP-GRSVPPFITR 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT L +PS + +F DF + +AHN FD + AELQRI + Sbjct: 58 LTGITTAMLVGRPSADEVLPDFLDFLG--DGVLVAHNLAFDRKMLEAELQRIGLAW-PGN 114 Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + TL +ARR P L+ L + Y I + +R H AL D+ + V ++++ + Sbjct: 115 PALCTLRLARRLLPGLPAKGLDGLIRFYQIPVENR--HRALGDAEATAHVLLRLLEEARR 172 Query: 181 INFGFKTNE------DRFFKEEKKTVPNISLLKRDKPLFTRITKEEL--DEHDKTI 228 +G T E + + + K P + L + P L DEH + + Sbjct: 173 -QYGIDTLEALLTFQQQRYPQYKNASPLVRLRETLLPRLPEAPGVYLFRDEHGRLL 227 >gi|225024402|ref|ZP_03713594.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC 23834] gi|224942783|gb|EEG23992.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC 23834] Length = 240 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 79/241 (32%), Positives = 120/241 (49%), Gaps = 14/241 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +R+I+ D ETTG ++DR+IE +E++D T +++ P R EA K+HGI Sbjct: 4 LRQIILDTETTGFYYDRDDRLIEFAGLEMIDRRLTGNYLHLYVHPE-RDIPEEAAKVHGI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRI 123 T + L+ KP F+ I + DF E + HNA FDVGF+NAE +R ++ + + Sbjct: 63 TLDQLEGKPKFAEIGQQIADFIA--GTELVIHNAPFDVGFLNAEFRRAGLPSVEELTANV 120 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +DTL +AR +P +N L++LC R + S R HGAL+D LLS+VY+ M + Sbjct: 121 VDTLVMARAMYPGQKNSLDALCTRLEVDRSKRVFHGALIDCELLSEVYLGMTRSQFSLAD 180 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEHDKTIQTLGKN----AIWD 238 F E I+ +R L EE H+ + L K +IW Sbjct: 181 QFAEEESAEADAPAVV---IAPTERPAQLKVLAANAEENAAHEAYLDELDKKVEGGSIWR 237 Query: 239 R 239 + Sbjct: 238 K 238 >gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A] gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)] gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis RP62A] gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)] Length = 1436 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 478 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 592 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 593 -------EINKKLTNEDAYKRARP 609 >gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU144] Length = 1438 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 594 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 595 -------EINKKLTNEDAYKRARP 611 >gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU028] gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU045] Length = 1438 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 594 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 595 -------EINKKLTNEDAYKRARP 611 >gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis SK135] gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis SK135] Length = 1438 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 594 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 595 -------EINKKLTNEDAYKRARP 611 >gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228] gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis ATCC 12228] Length = 1442 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 484 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 540 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 541 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 598 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 599 -------EINKKLTNEDAYKRARP 615 >gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060] gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060] Length = 1442 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 484 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 540 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 541 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 598 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 599 -------EINKKLTNEDAYKRARP 615 >gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] Length = 1436 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609 >gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MRSA252] gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C160] gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus Btn1260] gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus A017934/97] gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8] gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus MRSA252] gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus Btn1260] gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C160] gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus A017934/97] gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8] gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00] Length = 1438 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611 >gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C427] gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C427] Length = 1438 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611 >gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus ST398] Length = 1438 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611 >gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144] gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144] Length = 1442 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 484 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 540 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 541 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 598 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 599 -------EINKKLTNEDAYKRARP 615 >gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus MRSA131] Length = 1436 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609 >gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98] gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819] gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796] gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98] gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819] gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796] Length = 1436 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609 >gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563] gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563] Length = 1439 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 11/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I + +VFD+ETTGL + D IIE+ AV++ + + + TF+ F+ P GR S + Sbjct: 416 IELKEATYVVFDVETTGLSAIYDNIIELAAVKMQNGNVID-TFEEFINP-GRPLSATIID 473 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD L + + + S+F ++ +A ++AHNA FD+GFI+ R + + Sbjct: 474 LTGITDAMLANTRTEKEVISDFREWVG--DAIFVAHNASFDMGFIDTAYNRHGFEK-SHN 530 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSH---LLSDVYIKMMVG 177 +IDTL ++R HP+ + + LN+L KRY + + H A+ D+ L+ ++IK Sbjct: 531 AVIDTLEMSRFLHPNLKSHRLNTLAKRYNVALEQH--HRAVYDAETTGALAWIFIKEAAA 588 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNI 203 +I + + N+D + K Sbjct: 589 DHEIFYHDELNKDVGKGDAYKQGRPF 614 >gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10] gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10] Length = 1433 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 102/200 (51%), Gaps = 10/200 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFD+ETTGL + + IIE+ AV++ +R F+ F P+ SP + L GI Sbjct: 416 EDTYVVFDVETTGLSAVYNTIIELAAVKVQGGEIIDR-FESFANPH-EPLSPTIIDLTGI 473 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ + D P + +F + N +AHNA FD+ F++A Q+ D + +ID Sbjct: 474 TDDMVADAPEIHDVLKDFKAWCG--NDILVAHNAAFDMAFLDAGYQKAGMDKAA-NPVID 530 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--IN 182 TL + R +P+ +N LN+LCK++ I + S H A+ D+ + KM+ + I Sbjct: 531 TLEMGRMLYPTFKNYRLNTLCKKFNIELV--SHHRAIYDAEATGHLLWKMVRDAVEKGIT 588 Query: 183 FGFKTNEDRFFKEEKKTVPN 202 N+ + KK PN Sbjct: 589 THSALNDQSSPDDYKKQRPN 608 >gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] Length = 1480 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 9/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + IVFDIETTG +KND I EIGAV+++ +R F F+ P R + Sbjct: 448 MDKTLDDGFIVFDIETTGFSAKNDAITEIGAVKVVKGEIVDR-FSTFVNP-RRPIPFKIE 505 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L I+D + + P I +F DF ++ +AHNA FD GFI ++INK+ Sbjct: 506 ELTHISDAMVMNAPFIEDILPKFLDFC--EDYIIVAHNAGFDTGFIRENAKKINKE--YN 561 Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IIDT+++AR P R L+++CK I++ H A+ D+ + ++++ + Sbjct: 562 PSIIDTVAMARLLLPELNRFKLDTVCKALNISLEGH--HRAVNDAEATAQIWVEFI 615 >gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 21193] Length = 1438 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611 >gi|322382351|ref|ZP_08056258.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153704|gb|EFX46079.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 1437 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 9/202 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I+ + +VFDIETTGL N++IIEI V++ D + R + F+ P+ K + Sbjct: 416 IKLKEATYVVFDIETTGLSVINNKIIEIAGVKMKDGKEIGR-YTTFIDPH-EKIPYNIQQ 473 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE ++ P + +F +F +A +AHNA+FD+GFI A L+ I L P+ Sbjct: 474 LTNITDEMVQGAPDIAEELPKFVEFVG--DAVLVAHNARFDMGFIQANLKNIGMPEL-PN 530 Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL +AR PS +N LN+L ++ +++ + H A+ D+ L + ++ + Sbjct: 531 PSLDTLELARLLFPSLKNHRLNTLADKFKVSLENH--HRAIDDTVALMHILNHLLQEAEE 588 Query: 181 INF-GFKTNEDRFFKEEKKTVP 201 N D K+ + T P Sbjct: 589 QNLTQLNRLNDHVGKDLRNTRP 610 >gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus TW20] Length = 1438 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611 >gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL] gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754] gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus] gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus COL] gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus NCTC 8325] gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754] Length = 1436 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609 >gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50] gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315] gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9] gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1] gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3] gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781] gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus A9719] gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A9299] gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A8115] gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6300] gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6224] gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5937] gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A8117] gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A10102] gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1] gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus subsp. aureus N315] gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu50] gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus aureus subsp. aureus JH9] gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus JH1] gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu3] gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781] gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus A9719] gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A9299] gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A8115] gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6300] gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6224] gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5937] gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A10102] gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A8117] gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981] gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03] gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 21172] Length = 1438 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611 >gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11] Length = 1436 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609 >gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis FRI909] Length = 1438 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNHL 594 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 595 -------EINKKLTNEDAYKRARP 611 >gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 55/2053] gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 65-1322] gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus 68-397] gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus E1410] gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M876] gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WBG10049] gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M899] gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C101] gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M809] gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M1015] gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 55/2053] gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 65-1322] gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus 68-397] gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus E1410] gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M876] gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C101] gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M899] gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WBG10049] gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M1015] gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M809] gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60] Length = 1438 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611 >gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9635] gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9635] Length = 1438 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611 >gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2] gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MSSA476] gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. Newman] gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5948] gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30] gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus 930918-3] gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9765] gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132] gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70] gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus MW2] gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus MSSA476] gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus str. Newman] gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5948] gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus 930918-3] gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30] gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9765] gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70] gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01] gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131] gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 21189] Length = 1438 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611 >gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus MRSA177] Length = 1442 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 484 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 540 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 541 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 594 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 595 ---LNHNEINKKLSNEDAYKRARP 615 >gi|126698903|ref|YP_001087800.1| DNA polymerase III PolC-type [Clostridium difficile 630] gi|255100324|ref|ZP_05329301.1| DNA polymerase III PolC-type [Clostridium difficile QCD-63q42] gi|255306262|ref|ZP_05350434.1| DNA polymerase III PolC-type [Clostridium difficile ATCC 43255] gi|115250340|emb|CAJ68162.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile] Length = 1432 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 9/170 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFDIETTG + ND+I EIGAV++ ++ +R F + P + S + +L GIT Sbjct: 416 QTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGIT 473 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E +KDKP+ + +F +F ++ +AHNA+FD GFI+ + + L ++ +DT Sbjct: 474 NELIKDKPTIEEVLPKFMEFVG--DSVLVAHNAEFDTGFISQKCREQGL--LYNNKKVDT 529 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L +AR P+ R+ LN + K GI + + H A+ D+ + ++ K + Sbjct: 530 LMLARVMLPNLKRHRLNVVAKELGIPLLNH--HRAVDDAEATALIFNKFL 577 >gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98] Length = 1433 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 13/213 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GF+N ++ D + +IDTL Sbjct: 476 MLTDAPEVGEVFKKFQAWMGDH--TLVAHNASFDMGFLNVGFKKCGLDK-PKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P +N LN+LCK+ I ++ H A+ D+ + KM+ + F + Sbjct: 533 LARFLFPDMKNHRLNTLCKKLDIELTQH--HRAIYDTEATGYLLAKMLKEVIEKGFEYHD 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + + R + T +E Sbjct: 591 QLNDSMGQGDSYKRG-----RPSHVTLLATSDE 618 >gi|304439997|ref|ZP_07399890.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371489|gb|EFM25102.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640] Length = 1403 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 10/179 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + +VFDIE+TGL +D I EIGAV++ D +R F F+ P R + ++L IT Sbjct: 391 QKFVVFDIESTGLSPASDMITEIGAVKIEDGVIVDR-FSRFVNP-MRPIPEKVVELTRIT 448 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + ++P + +F +F +A +AHNA+FD FI ++ ++ P ++DT Sbjct: 449 NEMVANEPPIEVVIKDFVEFIG--DATLVAHNAEFDTAFIRRDMDKVGLKFDFP--VLDT 504 Query: 127 LSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINF 183 L ++R + R +L+++CK+ G+ + H A+ D+ ++ +IKMM +GGS +F Sbjct: 505 LYLSRAILNDLKRFNLSAICKKLGVNLEG--AHRAVNDAEATAEAFIKMMKLGGSPKSF 561 >gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130] gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130] Length = 1438 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611 >gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus] Length = 1435 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609 >gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus ED133] Length = 1436 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609 >gi|296451302|ref|ZP_06893042.1| DNA polymerase III PolC [Clostridium difficile NAP08] gi|296880346|ref|ZP_06904309.1| DNA polymerase III PolC [Clostridium difficile NAP07] gi|296259908|gb|EFH06763.1| DNA polymerase III PolC [Clostridium difficile NAP08] gi|296428587|gb|EFH14471.1| DNA polymerase III PolC [Clostridium difficile NAP07] Length = 1432 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 9/170 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFDIETTG + ND+I EIGAV++ ++ +R F + P + S + +L GIT Sbjct: 416 QTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGIT 473 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E +KDKP+ + +F +F ++ +AHNA+FD GFI+ + + L ++ +DT Sbjct: 474 NELIKDKPTIEEVLPKFMEFVG--DSVLVAHNAEFDTGFISQKCREQGL--LYNNKKVDT 529 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L +AR P+ R+ LN + K GI + + H A+ D+ + ++ K + Sbjct: 530 LMLARVMLPNLKRHRLNVVAKELGIPLLNH--HRAVDDAEATALIFNKFL 577 >gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1] gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1] Length = 1442 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ R S + L ITD+ Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHDGEIIDK-FERFSNPHER-LSETIINLTHITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 484 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 540 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 541 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGVNNH- 597 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 598 ------NEINKKLTNEDAYKRARP 615 >gi|255655317|ref|ZP_05400726.1| DNA polymerase III PolC-type [Clostridium difficile QCD-23m63] Length = 1432 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 9/170 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFDIETTG + ND+I EIGAV++ ++ +R F + P + S + +L GIT Sbjct: 416 QTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGIT 473 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E +KDKP+ + +F +F ++ +AHNA+FD GFI+ + + L ++ +DT Sbjct: 474 NELIKDKPTIEEVLPKFMEFVG--DSVLVAHNAEFDTGFISQKCREQGL--LYNNKKVDT 529 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L +AR P+ R+ LN + K GI + + H A+ D+ + ++ K + Sbjct: 530 LMLARVMLPNLKRHRLNVVAKELGIPLLNH--HRAVDDAEATALIFNKFL 577 >gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46] Length = 1436 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMQELGV---- 588 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609 >gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus JKD6159] Length = 1438 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611 >gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus D139] gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus H19] gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus D139] gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus H19] Length = 1438 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 ---LNHNEINKKLSNEDAYKRARP 611 >gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88] gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88] Length = 1427 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG +KND+IIEIGAV++ + ++ + F+ P R + ++L GI D Sbjct: 413 YVVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDK-YSTFVNPE-RIIPEKIIELTGIHDY 470 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + +F DF +++ +AHNA FDV FI + + I+DT+ Sbjct: 471 MVKDAPKIEEVLPKFIDFI--EDSILVAHNANFDVSFIKKNCKDFGIHF--NNPILDTIP 526 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + +P R LN + K GI + + H A+ D+ D+ +K Sbjct: 527 LCKFLYPELKRYKLNVVAKHLGIPLLNH--HRAVEDAKTTGDILLK 570 >gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795] gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795] Length = 1432 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 101/170 (59%), Gaps = 9/170 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFD+ETTG +KND+I EIGAV++ ++ +R F + P + S + +L GIT Sbjct: 416 QTFVVFDLETTGFSNKNDKITEIGAVKVKNFEIVDR-FNELINPE-KDISYKVQELTGIT 473 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ +KDKP+ I +F +F ++ +AHNA+FD+GFIN + + +N + ++ +DT Sbjct: 474 NDLIKDKPTIEEILPKFMEFVG--DSVLVAHNAEFDIGFINQKCKEMNIEF--KNKSVDT 529 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L +AR P R LN+L K G+ + + H A+ D+ + ++IK + Sbjct: 530 LMLARILLPHLKRFKLNNLTKELGVPL--HNHHRAVDDAAATAQIFIKFL 577 >gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus] Length = 1415 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 420 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 478 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 534 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 535 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 588 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 589 ---LNHNEINKKLSNEDAYKRARP 609 >gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius HKU10-03] Length = 1435 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 63/211 (29%), Positives = 112/211 (53%), Gaps = 15/211 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ K + Sbjct: 413 IMLQDATYVVFDVETTGLSNQYDKIIELAAVKVKNGEIIDK-FERFSNPH-EKLTETIKN 470 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITD+ LKD P + +EF + +A ++AHNA FD+GFI+ +R+ P + Sbjct: 471 LTHITDDMLKDAPEIEEVLTEFKAWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STN 527 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL ++R + S ++ LN L K+YG+ ++ H A+ D+ + +++KM+ Sbjct: 528 AVIDTLELSRTINTSYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFVKMLAQLKA 585 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 ++ ++ K + N KR +P Sbjct: 586 LDVHNH-------QDINKKLSNEDAYKRARP 609 >gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426] gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus kaustophilus HTA426] Length = 1444 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 62/185 (33%), Positives = 103/185 (55%), Gaps = 8/185 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R ++ +VFD+ETTGL + + IIE+ AV++ D +R F F P G S ++L Sbjct: 423 RLSEETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANP-GHPLSVTTMEL 480 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GITDE +KD P + + F D+ +A +AHNA FD+GF+N L R+ + + + Sbjct: 481 TGITDEMVKDAPKPDEVLARFVDWAG--DATLVAHNASFDIGFLNTGLARMGRGKIA-NP 537 Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR +P +N LN+LCK++ I ++ H A+ D+ + ++++ + Sbjct: 538 VIDTLELARFLYPDLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGHLLMRLLKEAEER 595 Query: 182 NFGFK 186 F Sbjct: 596 GILFH 600 >gi|254974851|ref|ZP_05271323.1| DNA polymerase III PolC-type [Clostridium difficile QCD-66c26] gi|255313978|ref|ZP_05355561.1| DNA polymerase III PolC-type [Clostridium difficile QCD-76w55] gi|255516658|ref|ZP_05384334.1| DNA polymerase III PolC-type [Clostridium difficile QCD-97b34] gi|255649757|ref|ZP_05396659.1| DNA polymerase III PolC-type [Clostridium difficile QCD-37x79] gi|260682913|ref|YP_003214198.1| DNA polymerase III PolC-type [Clostridium difficile CD196] gi|260686511|ref|YP_003217644.1| DNA polymerase III PolC-type [Clostridium difficile R20291] gi|260209076|emb|CBA62219.1| DNA polymerase III PolC-type [Clostridium difficile CD196] gi|260212527|emb|CBE03476.1| DNA polymerase III PolC-type [Clostridium difficile R20291] Length = 1432 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 97/170 (57%), Gaps = 9/170 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 +VFDIETTG + ND+I EIGAV++ ++ +R F + P + S + +L GIT Sbjct: 416 QTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDR-FSELINPE-KDISYKIQELTGIT 473 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E +KDKP+ I +F +F ++ +AHNA+FD GFI+ + + L ++ +DT Sbjct: 474 NELIKDKPTIEEILPKFMEFVG--DSVLVAHNAEFDTGFISQKCREQGL--LYNNKKVDT 529 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L +AR P+ R+ LN + K GI + + H A+ D+ + ++ K + Sbjct: 530 LMLARVMLPNLKRHRLNVVAKELGIPLLNH--HRAVDDAEATALIFNKFL 577 >gi|170761721|ref|YP_001787734.1| DNA polymerase III PolC [Clostridium botulinum A3 str. Loch Maree] gi|169408710|gb|ACA57121.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A3 str. Loch Maree] Length = 1432 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 9/169 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFD+ETTG +KND+IIEIGAV++ +R F F+ P GR + +L I Sbjct: 415 EDTFVVFDLETTGFSNKNDKIIEIGAVKIEKGKIVDR-FSEFVNP-GRSIPDKITELTSI 472 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ ++DK + I F DF ++ +AHNA FDV FIN + + + + ++D Sbjct: 473 TDDMVQDKETIDKILPRFIDFIG--DSVVVAHNAAFDVSFINKNCKDLKIEF--ENSVMD 528 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T++++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|325263721|ref|ZP_08130454.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. D5] gi|324030759|gb|EGB92041.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. D5] Length = 1498 Score = 181 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTG + D+IIEIGAV++++ +R F F+ P R + +L ITDE Sbjct: 461 YIVFDLETTGFSAIKDKIIEIGAVKVVNGEIVDR-FSTFVNPK-RPIPFQITQLTSITDE 518 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P +I +F +F ++ +AHNA FDVGFI + +D +DT++ Sbjct: 519 MVMGYPDIETILPQFLEF--AKDGVLVAHNAGFDVGFIEQNCR--YQDIEPHFVYVDTVA 574 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +AR P+ S+ LN + K GI++ + H A+ D+ S++++K + + N Sbjct: 575 MARVLLPTLSKYKLNVVAKALGISLENH--HRAVDDAAATSEIFVKFVQMLKEQNI 628 >gi|255284409|ref|ZP_05348964.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella formatexigens DSM 14469] gi|255265034|gb|EET58239.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella formatexigens DSM 14469] Length = 1530 Score = 181 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG +RIIEIGAV++ + T+R F F+ P +L I D Sbjct: 511 VVFDLETTGFSPTQNRIIEIGAVKVENGEITDR-FSTFVNPQ-VPIPFRIEQLTSINDNM 568 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+ + EF DF +A AHNA FDV FI ++R+ +DT+++ Sbjct: 569 VMDAPTIEQVLPEFLDFVG--DAVLAAHNASFDVSFIEENMRRLGL--WRDFTYVDTVAL 624 Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 AR P R L+++ K + + H H A+ D+ + +Y+K M Sbjct: 625 ARVLLPQLNRFKLDTVAKALHVQLQHH--HRAVDDAECTAGIYLKFME 670 >gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2] gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2] Length = 1441 Score = 181 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 99/185 (53%), Gaps = 8/185 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + +VFD+ETTGL + D IIE+ AV++ D +R F+ F P+ S + L Sbjct: 420 KLTEDTYVVFDVETTGLSAVYDTIIELAAVKIHDGEIIDR-FESFANPH-HPLSATTINL 477 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GITD+ +++ P + +F ++ +A +AHNA FD+GF+N +++ + Sbjct: 478 TGITDDLVENAPEVEEVLKKFHEWAG--DAVLVAHNASFDMGFLNVGYKKMGIGKAS-NP 534 Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR +P +N LN+L K++ + ++ H A+ D+ + +KM+ + Sbjct: 535 VIDTLELARFLYPDMKNHRLNTLAKKFDVELTQH--HRAIYDAEATGYLLLKMLKHADEK 592 Query: 182 NFGFK 186 + Sbjct: 593 GIEYH 597 >gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus caprae C87] gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus caprae C87] Length = 1442 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 102/176 (57%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 426 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 484 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 540 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 541 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMIQQMKELGV 594 >gi|187778984|ref|ZP_02995457.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579] gi|187772609|gb|EDU36411.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579] Length = 1442 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 93/169 (55%), Gaps = 9/169 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L I Sbjct: 425 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPEKITELTSI 482 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ + DK + I F +F ++ +AHNA FDV FIN + + + + ++D Sbjct: 483 TDDMVDDKEAIDKILPRFIEFIG--DSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMD 538 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T++++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 539 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 585 >gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122] gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122] Length = 1438 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ ++IIE+ AV++ + ++ F+ F P+ R S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYNKIIELAAVKVHNGEIIDK-FERFSNPHER-LSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELGV---- 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E K + N KR +P Sbjct: 591 ---LNHNEINKKLSNQDAYKRARP 611 >gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus pseudintermedius ED99] Length = 1435 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 63/211 (29%), Positives = 112/211 (53%), Gaps = 15/211 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ K + Sbjct: 413 IMLQDATYVVFDVETTGLSNQYDKIIELAAVKVKNGEIIDK-FERFSNPH-EKLTETIKN 470 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITD+ LKD P + +EF + +A ++AHNA FD+GFI+ +R+ P + Sbjct: 471 LTHITDDMLKDAPEIEEVLTEFKAWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-SAN 527 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL ++R + S ++ LN L K+YG+ ++ H A+ D+ + +++KM+ Sbjct: 528 AVIDTLELSRTINTSYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFVKMLAQLKA 585 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 ++ ++ K + N KR +P Sbjct: 586 LDVHNH-------QDINKKLSNEDAYKRARP 609 >gi|317500099|ref|ZP_07958334.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|316898584|gb|EFV20620.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] Length = 1520 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 9/197 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTG S D IIE+GAV++ D T+R F F+ P R E L ITDE Sbjct: 483 YIVFDIETTGFSSIKDAIIEVGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDE 540 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + +F +F + +AHNA FDVGFI + + D +DT++ Sbjct: 541 MVMDSPTIDVVLPQFLEFAG--DGVLVAHNAGFDVGFIEQNCRSLGLS--DEFVYLDTVA 596 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P+ S+ LN + K I++ + H A+ D+ +++++K + G Sbjct: 597 LARVLLPTLSKYKLNIVAKALNISLENH--HRAVDDAEATAEIFVKFTEMLKKDQVGTLK 654 Query: 188 NEDRFFKEEKKTVPNIS 204 +R+ + + Sbjct: 655 EVNRYGDRNVNAIRKMP 671 >gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325] gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325] Length = 1449 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 107/186 (57%), Gaps = 7/186 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R +VFD+ETTGL ++ DR+IEI AV++ + S+ + +F+ ++ P R S + Sbjct: 422 LRLKDATYVVFDVETTGLSAERDRLIEIAAVKVKNGSEID-SFESYINP-RRPISELITR 479 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITD+ +KD P + + F+++ +E + +AHNAKFD+GF++ +R+ + Sbjct: 480 LTSITDDDVKDAPFEEEVMTNFYNWLDEDD-ILVAHNAKFDLGFLDKSFERLGLKN-KNN 537 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 IDTL I+R ++ R+ L++L K Y + + H A+ D+ +++++KM+ + Sbjct: 538 ASIDTLFISRAENKEAKRHGLSNLAKLYKVRLVQH--HRAIYDTKATAEIFVKMLDQLYK 595 Query: 181 INFGFK 186 + + Sbjct: 596 LGIEYH 601 >gi|148284671|ref|YP_001248761.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Boryong] gi|146740110|emb|CAM80283.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str. Boryong] Length = 222 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 88/230 (38%), Positives = 128/230 (55%), Gaps = 12/230 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 RKIV D ET+GLD K RIIEIGAVEL D ++ TF ++ P R S EA K+HG Sbjct: 2 QRKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPE-RDISKEAYKVHG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ++ +FL DKP F I EF F + A+ I HNA FD+ F+N+EL RI K + + +I Sbjct: 61 LSRDFLSDKPKFREIVDEFLQFIDR--AQLIMHNANFDMQFLNSELFRIRKSAIPNTCVI 118 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 DTL++AR++ P R +L++LC ++ I S R HGAL D+ LL+ VY +MM G + Sbjct: 119 DTLTLARKRFPKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGRMMHGMQVVLLD 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + T N + + T +E+ +H + + + K+ Sbjct: 179 DTKHNKEIIISNCATNINNT-------VVVEPTCDEIIQHQQLLSKIHKH 221 >gi|168184630|ref|ZP_02619294.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Bf] gi|182672306|gb|EDT84267.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Bf] Length = 1432 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 94/169 (55%), Gaps = 9/169 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L I Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPK-RIIPDKITELTSI 472 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ ++DK + I F DF ++ +AHNA FDV FIN + + + + ++D Sbjct: 473 TDDMVQDKETIDKILPRFIDFIG--DSVVVAHNADFDVSFINKNCKDLKIEF--ENSVMD 528 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T++++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|237795859|ref|YP_002863411.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Ba4 str. 657] gi|229260819|gb|ACQ51852.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Ba4 str. 657] Length = 1432 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 94/169 (55%), Gaps = 9/169 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L I Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPK-RIIPDKITELTSI 472 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ ++DK + I F DF ++ +AHNA FDV FIN + + + + ++D Sbjct: 473 TDDMVQDKETIDKILPRFIDFIG--DSVVVAHNADFDVSFINKNCKDLKIEF--ENSVMD 528 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T++++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254] gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254] Length = 1151 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG D ND+IIEIGAV++ F F+ P P+ +L ITDE Sbjct: 117 YVVFDIETTGFDPFNDKIIEIGAVKMRGREIIGE-FSEFVNPEI-PIPPKITELTTITDE 174 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + ++ F +F + +AHNAKFDVGFI + + +IDTL Sbjct: 175 MVANAEKIETVLPRFLEFC--TDTTVVAHNAKFDVGFIKQKTIEQGLEYSPS--VIDTLP 230 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P SR L +L K +GIT+ + H A+ D+ ++V+ K + Sbjct: 231 LARTLLPDSRGYGLANLVKYFGITLE--THHRAVDDAKATAEVFQKFL 276 >gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814] gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814] Length = 1513 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 9/197 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG D+IIEIGAV+ +++ + F F+ P + +L ITD+ Sbjct: 470 YVVFDLETTGFSPIKDKIIEIGAVK-VEHGEITDKFSTFVNPK-VPIPFQITQLTSITDQ 527 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P ++ +F +F +A +AHNA FDV FI + +D +DT++ Sbjct: 528 MVIGAPDIETVLPQFLEFIG--DAALVAHNASFDVSFIEQNCR--YQDIQPDFTSVDTVA 583 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P+ S+ LN + I++ + H A+ D+ +++++K + Sbjct: 584 MARILLPTLSKYKLNVVANALHISLENH--HRAVDDAGATAEIFVKFVEMLKDRGIYDLA 641 Query: 188 NEDRFFKEEKKTVPNIS 204 ++F + V + Sbjct: 642 KLNQFGENNADAVRKLP 658 >gi|254456100|ref|ZP_05069529.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083102|gb|EDZ60528.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 220 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 13/224 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+++V D ETTG+ K RI+EIG +EL + T F +L P RK S +AL++HG Sbjct: 1 MKEVVLDTETTGISVKEGHRIVEIGCIELDNLIPTKNRFHCYLNPE-RKVSEKALEVHGY 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDEFL ++ FS I +F F ++ I HNA+FD+G +N EL K ++ + I+D Sbjct: 60 TDEFLSEQKKFSDIGEQFLAFIKDKR--LIIHNAEFDLGHLNNELSIFGKKKIN-NEIVD 116 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL +AR K P S L++LCKRY I S R++H AL+D LLS VYI ++ + F Sbjct: 117 TLILARDKFPGSPVSLDALCKRYRIDNSIRTQHTALIDCDLLSKVYINLI-DQKEPTLNF 175 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 + + V + +++E+ +H++ ++ Sbjct: 176 QNLDTETDNSNSSKVSYFK-------KVVKPSEDEIFKHNEYLK 212 >gi|331087674|ref|ZP_08336601.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA] gi|330410366|gb|EGG89799.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA] Length = 1520 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 9/197 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTG S D IIE+GAV++ D T+R F F+ P R E L ITDE Sbjct: 483 YIVFDIETTGFSSIKDAIIEVGAVKVTDGKITDR-FSTFVNPK-RPIPFEITNLTSITDE 540 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + +F +F + +AHNA FDVGFI + + D +DT++ Sbjct: 541 MVMDSPTIDVVLPQFLEFAG--DGVLVAHNAGFDVGFIEQNCRSLGLS--DEFVYLDTVA 596 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P+ S+ LN + K I++ + H A+ D+ +++++K + G Sbjct: 597 LARVLLPTLSKYKLNIVAKALNISLENH--HRAVDDAEATAEIFVKFTEMLKKDQVGTLK 654 Query: 188 NEDRFFKEEKKTVPNIS 204 +R+ + + Sbjct: 655 EVNRYGDRNVNAIRKMP 671 >gi|295091739|emb|CBK77846.1| DNA polymerase III, alpha chain, Gram-positive type [Clostridium cf. saccharolyticum K10] Length = 1037 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 12/202 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG +RIIEIGAV++ + +R F F+ P E KL I+D Sbjct: 198 VVFDIETTGFSPLKNRIIEIGAVKVENGKIVDR-FSTFVNPE-VPIPFEIEKLTSISDNM 255 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + +F +F + +A +AHNA FD+ FI K ++DT+S+ Sbjct: 256 VLGAPKIEEVLPKFLEFCS--DAVMVAHNASFDMSFIRHNAMIQGKSFEPT--VLDTVSM 311 Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 AR P+ R L+++ K I++ + H A+ D+ +++++K + N Sbjct: 312 ARFLLPNLNRFKLDTVAKELRISLENH--HRAVDDAGATAEIFVKFVEMLKSRGI---EN 366 Query: 189 EDRFFKEEKKTVPNISLLKRDK 210 D ++ + +V I + + Sbjct: 367 LDELNEQSRMSVETIRKMPTNH 388 >gi|254519189|ref|ZP_05131245.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA] gi|226912938|gb|EEH98139.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA] Length = 1442 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 9/173 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + IVFDIETTG +KND+IIEIGAV+ + + TF F+ P R + Sbjct: 421 MGQSFDDTFIVFDIETTGFSAKNDKIIEIGAVK-IKGREVIDTFSEFVYPKCR-IPYKIT 478 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GITDE ++D + +F +F + +AHNA FD GFI + + Sbjct: 479 ELTGITDEIVQDADPIEVVLPKFIEFID--GCAVVAHNAAFDTGFIKKNCNDLGLEF--N 534 Query: 121 SRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S I+DT+ +AR +P + LN + K G+++ + H A+ D+ +++++ Sbjct: 535 STIVDTVPLARFLYPELKRVKLNLVAKHLGVSLENH--HRAVDDAKATAEIFL 585 >gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC 27755] gi|166027086|gb|EDR45843.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC 27755] Length = 1521 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 9/200 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K +VFD+ETTG S D+IIEIGAV++ + T++ + F+ P +L I Sbjct: 475 KGTYVVFDLETTGFSSAKDKIIEIGAVKVENGEITDK-YSTFVNPKI-PIPFRITQLTSI 532 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE + + P +I +F F +A +AHNA FDV FI ++ +P +D Sbjct: 533 TDEMVMESPEIETILPQFLKFVG--DAVLVAHNASFDVSFIEENCRQQGIEP--DFTSVD 588 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 T+ +AR P+ S+ LN + K I+ H H A+ D+ + +++Y+K + + Sbjct: 589 TVGLARVLLPTLSKFKLNVVAKALNISQEHH--HRAVDDARVTAEIYVKFIQMLEERGIE 646 Query: 185 FKTNEDRFFKEEKKTVPNIS 204 + F + + + Sbjct: 647 TLDQMNHFGAHNAEAIRKMP 666 >gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3] gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3] Length = 1444 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 103/185 (55%), Gaps = 8/185 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +VFD+ETTGL + + IIE+ AV++ D +R F +F P G S ++L Sbjct: 423 RLADETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMLFANP-GHPLSVTTMEL 480 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GITDE +KD P + + F D+ +A +AHNA FD+GF+NA L R+ + + + Sbjct: 481 TGITDEMVKDAPKPDEVLARFVDWAG--DATLVAHNASFDIGFLNAGLARMGRGKIA-NP 537 Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR +P +N LN+LCK++ I ++ H A+ D+ + ++++ + Sbjct: 538 VIDTLELARFLYPDLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGHLLMRLLKEAEER 595 Query: 182 NFGFK 186 F Sbjct: 596 GILFH 600 >gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus warneri L37603] gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus warneri L37603] Length = 1438 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 102/176 (57%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ K S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLTDAPEIEDVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTDYGKHGLNFLAKKYGVDLTQH--HRAIYDTEATAYIFIKMVQQMKELGV 590 >gi|291166154|gb|EFE28200.1| DNA polymerase III, alpha subunit, Gram-positive type [Filifactor alocis ATCC 35896] Length = 1407 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 11/197 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG S ND IIEIGAV++ + +R F F+ P R+ +L IT+E Sbjct: 390 FVVFDIETTGFSSINDAIIEIGAVKIKNREIIDR-FSEFVNPK-REIPYHITELTSITNE 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++ + + F +F +++ ++AHN+ FD FI +R+ D L IDT+ Sbjct: 448 MVCNEDTIEEVLPRFMEF--SKDSVFVAHNSDFDTSFIKENCKRL--DLLYDRIAIDTVE 503 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R R+ LN + K+ GI++ + H A+ D+ + +++K + + G T Sbjct: 504 LSRALLTDLKRHKLNVVAKKLGISLENH--HRAVDDAEATAQIFLKFLTMIEE--CGVTT 559 Query: 188 NEDRFFKEEKKTVPNIS 204 + K K + I Sbjct: 560 LAEVNQKITKTNIDTIR 576 >gi|94985918|ref|YP_605282.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM 11300] gi|94556199|gb|ABF46113.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM 11300] Length = 180 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 10/183 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCP-----NGRKNSPEAL 60 M +VFD+ETTGL + D I+EIGA+ ++D F+ + P A Sbjct: 1 MNVVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQ 60 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI+D ++D P + EF DF + AHN FD F+ A +R P Sbjct: 61 RVHGISDAMVQDAPELGQVLPEFLDFVGR--SAVAAHNIGFDSSFMRAAARRCGLVWAPP 118 Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + T+ ++RR P R ++L+ L +R G++ + +H +L D + ++ ++++M S Sbjct: 119 AEY-CTVQLSRRAFPRERTHNLDVLAQRLGLSFAPGGRHRSLGDVQVTAEAFVRLMERLS 177 Query: 180 QIN 182 + Sbjct: 178 VLG 180 >gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905] gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905] Length = 1443 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 93/174 (53%), Gaps = 8/174 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ D ++ ++ F P+ S ++L GITD+ Sbjct: 428 YVVFDVETTGLSTAYDTIIELAAVKIKDGQVIDK-YESFANPH-HPLSATTIELTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + EF F + +AHNA FD+GF+ ++ + +IDTL Sbjct: 486 MVRHAPEVEQVIKEFHAFIG--DGIVVAHNASFDIGFLYTGYKKFGLEG-TTHPVIDTLE 542 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +AR +P + LN+LCK++ I ++ H A+ D+ + ++++ ++ Sbjct: 543 LARLLYPTMKNHRLNTLCKKFNIELTQH--HRAIYDTEATGYLLLQLLKDADEL 594 >gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359] gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359] Length = 1367 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGLD + D IIEIGAV++ + + + + P+G S ++ ++ GIT E Sbjct: 360 FVVFDFETTGLDPQVDEIIEIGAVKIKEGRIIDE-YHTLIKPSGT-ISRKSAEITGITQE 417 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127 L+ + + + EF +F +++ +AHNA FD F+ +++ + KD P +DTL Sbjct: 418 MLEGERAIEEVLPEFLEFL--EDSILVAHNANFDYRFLRLWIKKVLGKDWEKP--YVDTL 473 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++A+ L+S+ K+ G + H AL D+ + + V+++ + +I Sbjct: 474 ALAKSLLRLKSYSLDSVVKKLG--LGSFRHHRALDDARVTAQVFLRFIEMMKKIGI 527 >gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402] gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402] Length = 1434 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL S+ D+IIE+ AV++ D ++ F+ F P G + + L GITD+ Sbjct: 418 YVVFDVETTGLSSQYDKIIELAAVKVKDGEIIDK-FERFSNP-GERLNETIKNLTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P S+ ++F DF +A ++AHNA FD+GFI+ R+ P + +IDTL Sbjct: 476 MLIDAPPIESVLNDFKDFVG--DAIYVAHNASFDMGFIDTGFDRLGYGP-TENGVIDTLE 532 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + +++KM+ +T Sbjct: 533 LSRTINTEMGKHGLNFLAKKYGVELTQH--HRAIYDAETTAHIFVKMLKQ-------MET 583 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 KE + N KR +P Sbjct: 584 LGVTNHKEIDLKLSNKDAYKRARP 607 >gi|148380379|ref|YP_001254920.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC 3502] gi|153932951|ref|YP_001384598.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 19397] gi|153935522|ref|YP_001388114.1| DNA polymerase III PolC [Clostridium botulinum A str. Hall] gi|148289863|emb|CAL83971.1| DNA polymerase III PolC-type [Clostridium botulinum A str. ATCC 3502] gi|152928995|gb|ABS34495.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A str. ATCC 19397] gi|152931436|gb|ABS36935.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A str. Hall] Length = 1432 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 9/169 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L I Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSI 472 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ + DK + I F DF ++ +AHNA FDV FIN + + + + ++D Sbjct: 473 TDDMVDDKEAIDKILPRFIDFIG--DSVVVAHNASFDVSFINKNCKDLKIEF--ENSVMD 528 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T++++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1] gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1] Length = 1375 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 8/179 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +VFD+ETTGL + + IIE+ AV++ D +R F+ F P+ S + L Sbjct: 419 NLEEDTYVVFDVETTGLSAMYNTIIELAAVKIRDGEIIDR-FESFANPH-HPLSATTINL 476 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GITD+ ++ P + F D+ +A +AHNA FD+GF+N + D + + Sbjct: 477 TGITDDMVEGAPEVAEALKAFKDWAG--DAVLVAHNASFDMGFLNVGYGKAGLDKAE-NP 533 Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL +AR +P + LN+L K++ + ++ H A+ D+ + +KM+ ++ Sbjct: 534 VIDTLELARLLYPEMKNHRLNTLAKKFDVELTQH--HRAIYDAEATGYLLLKMLKDANE 590 >gi|322806689|emb|CBZ04258.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065] Length = 1432 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 9/169 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L I Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSI 472 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ + DK + I F +F N+ +AHNA FDV FIN + + + + ++D Sbjct: 473 TDDMVDDKEAIDKILPRFIEFIG--NSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMD 528 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T++++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341] gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341] Length = 1449 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 108/186 (58%), Gaps = 7/186 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ +VFD+ETTGL ++ DR+IEI AV++ + ++ + +F+ ++ P R S + Sbjct: 422 LKLKDATYVVFDVETTGLSAERDRLIEIAAVKVKNGTEID-SFESYINPQ-RPISELITR 479 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L IT++ ++D P + + F+++ ++ + +AHNAKFD+GF++ +R+ + + Sbjct: 480 LTSITNDDVRDAPLEKEVMTNFYNWLDKDD-ILVAHNAKFDLGFLDTCFERLGLEN-KNN 537 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 IDTL ++R ++ R+ L++L K Y + + H A+ D+ +++++KM+ + Sbjct: 538 ASIDTLFVSRAENKEAKRHGLSNLAKLYKVRLVQH--HRAIYDTKATAEIFVKMLDQLYE 595 Query: 181 INFGFK 186 + + Sbjct: 596 LGIEYH 601 >gi|149201054|ref|ZP_01878029.1| putative exonuclease [Roseovarius sp. TM1035] gi|149145387|gb|EDM33413.1| putative exonuclease [Roseovarius sp. TM1035] Length = 688 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 105/199 (52%), Gaps = 10/199 (5%) Query: 4 KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61 + + +VFD ETTGL + D I++I + +++ +F + + P GR P + + Sbjct: 489 LSDLSFVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNP-GRPIPPASTR 547 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H I+D+ ++D P F DF Q A +AHNA FD+ F+ + + I + +P Sbjct: 548 VHHISDDMVQDAPDIIEAGRRFHDFC--QGAVLVAHNAPFDLAFLRLKEKVIGRRFDNP- 604 Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ T+ ++ S ++ L++LC+R+GITI ++H A+ D+ ++V+++M+ G Sbjct: 605 -VLCTVLMSAGLFDHSGQHTLDALCERFGITIPPEARHTAMGDTVATAEVFVRML--GLL 661 Query: 181 INFGFKTNEDRFFKEEKKT 199 G T +E + T Sbjct: 662 QAKGVTTLGGAIAEEGRMT 680 >gi|226949776|ref|YP_002804867.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A2 str. Kyoto] gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A2 str. Kyoto] Length = 1432 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 9/169 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L I Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSI 472 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ + DK + I F +F N+ +AHNA FDV FIN + + + + ++D Sbjct: 473 TDDMVDDKEAIDKILPRFIEFIG--NSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMD 528 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T++++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|150390440|ref|YP_001320489.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF] gi|149950302|gb|ABR48830.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF] Length = 1432 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 96/173 (55%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTGL ++NDRI EIGAV++ D ++ F + P K + ++L GITD+ Sbjct: 420 YIVFDIETTGLSNRNDRITEIGAVKIKDSQVIDK-FSALVNPE-MKIPSKIVELTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DK + I F F + +AHN+ FD+GFI RI + +++IDTL Sbjct: 478 MVVDKQTIDVILPGFLAFIGS--SPVVAHNSDFDMGFIRENANRIERTI--ENQVIDTLK 533 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++R P R+ LNS+ K +++ + H A+ D+ +++++K + Q Sbjct: 534 LSRILLPQLKRHRLNSIAKELNVSLENH--HRAVDDAQATAEIFVKFIELLKQ 584 >gi|302670324|ref|YP_003830284.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316] gi|302394797|gb|ADL33702.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316] Length = 1529 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 9/203 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + +VFDIETTG +RIIEIGAV++ + R F F+ P KL Sbjct: 493 LDDTTFVVFDIETTGFSPIKNRIIEIGAVKIRNGEILER-FSEFINPQ-VPIPYRIEKLT 550 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 ITDE + D P+ I +F +F ++A + HN FD+ FIN Q + D Sbjct: 551 SITDEMVMDAPTREVIIPKFVEFC--KDAVLVGHNVAFDISFINQNCQDLGIDV--DYTT 606 Query: 124 IDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +DTL +AR P +++ L+++ K + + H H A+ D+ + ++ K + + Sbjct: 607 VDTLWLARYFFPLQAKHTLDAVAKTLNVVLDHH--HRAVDDAECTALIFNKFIPMLKEQK 664 Query: 183 FGFKTNEDRFFKEEKKTVPNISL 205 T+ + K + + ++ Sbjct: 665 AENLTDVNILGKPTPEMIRHLRP 687 >gi|170754900|ref|YP_001781966.1| DNA polymerase III PolC [Clostridium botulinum B1 str. Okra] gi|169120112|gb|ACA43948.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum B1 str. Okra] Length = 1432 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 92/169 (54%), Gaps = 9/169 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L I Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSI 472 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ + DK + I F +F ++ +AHNA FD FIN + + + + ++D Sbjct: 473 TDDMVDDKEAIDKILPRFIEFIG--DSVVVAHNAAFDASFINKNCKDLKIEF--KNSVMD 528 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T++++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|330901691|gb|EGH33110.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. japonica str. M301072PT] Length = 209 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 111/205 (54%), Gaps = 13/205 (6%) Query: 51 NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 R++ A+ +HGIT+EFL KP F+ + EF++F + A+ I HNA FDVGFIN E Sbjct: 2 PDRESDEGAIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEF 59 Query: 111 QRIN----KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 + D ++DTL +AR +HP RN L++LCKRYG+ S R HGALLDS + Sbjct: 60 ALMGSQDRADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEI 119 Query: 167 LSDVYIKMMVGGSQINF-GFKTNEDRFFKEEKKTVPNISLLKRDKP--LFTRITKEELDE 223 L+DVY+ M G + ++ G ++ + + I L D+ R ++ EL E Sbjct: 120 LADVYLAMTGGQTSLSLAGNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAE 179 Query: 224 HDKTIQTLGKNA----IWDRYISSN 244 H+ + T+ K +W + + + Sbjct: 180 HEVRMSTIAKACGAPPLWVQMLEAG 204 >gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland] gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum F str. Langeland] gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum F str. 230613] Length = 1432 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 9/169 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L I Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPE-RSIPDKITELTSI 472 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ + DK + I F +F N+ +AHNA FDV FIN + + + + ++D Sbjct: 473 TDDMVDDKEAIDKILPRFIEFIG--NSVVVAHNAAFDVSFINKNCKDLKIEF--KNSVMD 528 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T++++R P R LN + K GI++ + H A+ D+ +D+ +K Sbjct: 529 TVTLSRFLFPELKRYKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella haemolysans ATCC 10379] gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella haemolysans ATCC 10379] Length = 1449 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 108/186 (58%), Gaps = 7/186 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ +VFD+ETTGL ++ DR+IEI AV++ + ++ + +F+ ++ P R S + Sbjct: 422 LKLKDATYVVFDVETTGLSAERDRLIEIAAVKVKNGAEID-SFESYINPQ-RPISELITR 479 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L IT++ +KD P + + F+++ ++ + +AHNAKFD+GF++ +R+ + + Sbjct: 480 LTSITNDDVKDAPLEKEVMTNFYNWLDKDD-ILVAHNAKFDLGFLDTCFERLGLEN-KNN 537 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 IDTL ++R ++ R+ L++L K Y + + H A+ D+ +++++KM+ + Sbjct: 538 ASIDTLFVSRAENKEAKRHGLSNLAKLYKVRLVQH--HRAIYDTKATAEIFVKMLDQLYE 595 Query: 181 INFGFK 186 + + Sbjct: 596 LGIEYH 601 >gi|197301360|ref|ZP_03166441.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC 29176] gi|197299517|gb|EDY34036.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC 29176] Length = 1517 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 9/197 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTG + D+IIEIGAV++++ +R F F+ P R E L ITDE Sbjct: 481 YIVFDIETTGFSAIRDKIIEIGAVKVVNGEIVDR-FSTFVNPQ-RPIPFEITNLTSITDE 538 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + ++ +F +F + +AHNA FDVGFI + ++ +DT++ Sbjct: 539 MVLEADPIENVLPQFLEFVG--DGVLVAHNASFDVGFIEQNCR--YQEIEYRFTYVDTVA 594 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P+ S+ LN + K GI++ + H A+ D+ +++++K + + + Sbjct: 595 MARVLLPTLSKYKLNLVAKTLGISLENH--HRAVDDAGATAEIFVKFVEMLKKDHITDLK 652 Query: 188 NEDRFFKEEKKTVPNIS 204 +RF + + ++ Sbjct: 653 GINRFGERNVNAIRKMA 669 >gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41] gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41] Length = 1468 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 93/174 (53%), Gaps = 8/174 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ D ++ ++ F P+ S ++L GITD+ Sbjct: 453 YVVFDVETTGLSTAYDTIIELAAVKIKDGHVIDK-YESFANPH-HPLSATTIELTGITDD 510 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + EF F + +AHNA FD+GF+ ++ + +IDTL Sbjct: 511 MVRHAPEVEQVIKEFHAFIG--DGIVVAHNASFDIGFLYTGYKKFGLEG-TTHPVIDTLE 567 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +AR +P + LN+LCK++ I ++ H A+ D+ + ++++ ++ Sbjct: 568 LARLLYPTMKNHRLNTLCKKFNIELTQH--HRAIYDTEATGYLLLQLLKDADEL 619 >gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] Length = 1538 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 12/202 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG ++IIEIGAV++ + +R F F+ P E KL I+D Sbjct: 514 VVFDIETTGFSPLKNKIIEIGAVKVENGKIVDR-FSTFVNPE-VPIPFEIEKLTSISDNM 571 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + +F +F + +A +AHNA FD+ FI K ++DT+S+ Sbjct: 572 VLGAPKIEEVLPKFLEFCS--DAVMVAHNASFDMSFIRHNAMIQGKSFEPT--VLDTVSM 627 Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 AR P+ R L+++ K I++ + H A+ D+ +++++K + N Sbjct: 628 ARFLLPNLNRFKLDTVAKELRISLENH--HRAVDDAGATAEIFVKFVEMLKSRGI---EN 682 Query: 189 EDRFFKEEKKTVPNISLLKRDK 210 D ++ + +V I + + Sbjct: 683 LDELNEQSRMSVETIRKMPTNH 704 >gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435] gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus haemolyticus JCSC1435] Length = 1438 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 111/204 (54%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ K S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLTDAPEIEEVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTESTAYIFIKMVQQMKELGV---- 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 K+ + + N KR +P Sbjct: 591 ---TNHKDINQKLSNEDAYKRARP 611 >gi|302874658|ref|YP_003843291.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B] gi|302577515|gb|ADL51527.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B] Length = 1443 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG S+NDRIIEIGAV++ + + F VF+ P + E +L GI + Sbjct: 430 FVVFDIETTGFSSQNDRIIEIGAVKVKNGEIIDE-FSVFVNPQ-KDIPLEITELTGIDNY 487 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + + EF+DF + + +AHNA FD FI ++ D I+DT+ Sbjct: 488 MVKDAKTIDIVIKEFYDFVD--GSILVAHNAAFDTSFIKKNY--LDNDLEFNYPIMDTIP 543 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + +P+ + LN +CK GIT+ + H A+ D+ + V++K Sbjct: 544 LCKYLYPALNKYKLNVICKYLGITLLNH--HRAVDDAKATAMVFLK 587 >gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL B-59395] gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL B-59395] Length = 623 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTG + +DRI EIGAV++ F + P GR P+ + L Sbjct: 54 LRDTTFVVVDLETTGGSADDDRITEIGAVKIRGGEVLGE-FATLVDP-GRAIPPQIVALT 111 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT L D P + F +F + +AHNA+FD+GF+ R+ + P S Sbjct: 112 GITTAMLYDAPRIEEVLPAFAEF--ARGTVLVAHNARFDMGFLRKSAARM-RLPWPFSTS 168 Query: 124 IDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + T+ +ARR L++L + + +++ R H AL D+ +V+ +++ Sbjct: 169 LCTVVMARRILSRQEAPTVKLSALAELFQVSV--RPTHRALDDARATVEVFHRLLERVG- 225 Query: 181 INFGFKTNEDRFFKEEKKTVPNIS--------LLKRDKPLFTRITKEE 220 N G +T D + P + L +R R +E Sbjct: 226 -NQGVQTVGD-LTAYLPRATPAMRAKRSIASGLPRRPGVYLFRGPADE 271 >gi|307690728|ref|ZP_07633174.1| DNA polymerase III PolC [Clostridium cellulovorans 743B] Length = 1439 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG S+NDRIIEIGAV++ + + F VF+ P + E +L GI + Sbjct: 426 FVVFDIETTGFSSQNDRIIEIGAVKVKNGEIIDE-FSVFVNPQ-KDIPLEITELTGIDNY 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + + EF+DF + + +AHNA FD FI ++ D I+DT+ Sbjct: 484 MVKDAKTIDIVIKEFYDFVD--GSILVAHNAAFDTSFIKKNY--LDNDLEFNYPIMDTIP 539 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + +P+ + LN +CK GIT+ + H A+ D+ + V++K Sbjct: 540 LCKYLYPALNKYKLNVICKYLGITLLNH--HRAVDDAKATAMVFLK 583 >gi|229829203|ref|ZP_04455272.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM 14600] gi|229792366|gb|EEP28480.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM 14600] Length = 1532 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG ++ DRIIEIGAV + T+R F F+ P GR +L I D+ Sbjct: 500 FVVFDIETTGFSAEKDRIIEIGAVRMEGGRITDR-FSSFVNP-GRPIPFRITELTSIRDD 557 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +F F Q A +AHNA FD+GFI R++ + P+ +DT++ Sbjct: 558 MVIGSAGIEEVLPDFLAF--SQGAIMVAHNADFDMGFIRQNCLRLHLEA--PATYMDTVA 613 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R PS N LN+L K I H H A+ D+ + ++ K + Sbjct: 614 MGRYLMPSLHNQKLNTLAKALKIDPGHH--HRAVDDAEATAHIFEKFI 659 >gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU121] Length = 1438 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 102/176 (57%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ + ++ F+ F P+ K S + L ITD+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDK-FERFSNPH-EKLSETIINLTHITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + ++F ++ +A ++AHNA FD+GFI+ +R+ P + +IDTL Sbjct: 480 MLTDAPEIEDVLTDFKEWVG--DAIFVAHNASFDMGFIDTGYERLGFGP-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVDLTQH--HRAIYDTEATAYIFIKMVQQMKELGV 590 >gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911] gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911] Length = 1440 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 10/192 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I + IVFD+ETTGL + D IIE+ AV++ D +R F+ F P+ S + Sbjct: 418 IPLAEGTYIVFDVETTGLSAVYDTIIELAAVKIHDGEIIDR-FESFANPH-HPLSATTID 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +++ P + F ++ QN +AHNA FD+GF+N +R + Sbjct: 476 LTGITDDDVRNAPEVEEVLRRFKEW--SQNDILVAHNASFDMGFLNTGYKRYGLGKAA-N 532 Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGG 178 +IDTL +AR P + LN+L K++ + ++ H A+ D+ + IKM+ V Sbjct: 533 PVIDTLELARFLLPEMKNHRLNTLAKKFDVELTQH--HRAIYDAEATGYLLIKMLKEVMQ 590 Query: 179 SQINFGFKTNED 190 I + + N++ Sbjct: 591 KGIEYHNQLNDN 602 >gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus W] gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus W] gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 1433 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|168180697|ref|ZP_02615361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum NCTC 2916] gi|182668382|gb|EDT80361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum NCTC 2916] Length = 1432 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 9/169 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFD+ETTG SKND+IIEIGAV++ +R F F+ P R + +L I Sbjct: 415 EDTFVVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDR-FSEFVNPK-RTIPDKITELTSI 472 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD + DK + I F DF ++ +AHNA FDV FIN + + + + ++D Sbjct: 473 TDNMVDDKETIDKILPRFIDFIG--DSVVVAHNASFDVSFINKNCKDLKIEF--ENSVMD 528 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T++++R P R+ LN + K GI++ + H A+ D+ +D+ +K Sbjct: 529 TVTLSRFLFPELKRHKLNVIAKHLGISLENH--HRAVDDAKATADILLK 575 >gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 1433 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P + LN+LCK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1433 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames] gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor'] gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne] gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L] gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Bacillus anthracis str. A2012] gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0488] gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0465] gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0389] gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis Tsiankovskii-I] gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus NVH0597-99] gi|218904946|ref|YP_002452780.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH820] gi|227813274|ref|YP_002813283.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. CDC 684] gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201] gi|229601637|ref|YP_002868056.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0248] gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066] gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055] gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum] gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94] gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus anthracis CI] gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. Ames] gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. 'Ames Ancestor'] gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. Sterne] gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L] gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0488] gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0389] gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0465] gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis Tsiankovskii-I] gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus NVH0597-99] gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH820] gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. CDC 684] gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201] gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0248] gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis str. CI] Length = 1433 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0442] gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B] gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0442] Length = 1433 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINIGFKKAGLEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|313472267|ref|ZP_07812759.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 1153] gi|239529663|gb|EEQ68664.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 1153] Length = 1428 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 13/207 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +N+ ++FD+ETTGL S D IIEIGAV++ D R F F+ P+ S + Sbjct: 404 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTI 460 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L ITDE + + + F +F+ ++ HN +FDVGF+NA L+R + Sbjct: 461 NLTSITDEMVSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEI-T 517 Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-- 177 ++DTL ++R HP ++ L+SLCK+Y + + H H A D+ + K++ Sbjct: 518 QPVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFN 575 Query: 178 --GSQINFGFKTNEDRFFKEEKKTVPN 202 Q + G + +F + K+ P Sbjct: 576 DKFEQDDLGKMNDYAKFGQVYKRAKPT 602 >gi|213582095|ref|ZP_03363921.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 172 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 71/166 (42%), Positives = 101/166 (60%), Gaps = 11/166 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 D+L++AR+ P RN L++LC RY I S R+ HGALLD+ Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQ 172 >gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187] gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26] gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293] gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH187] gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293] gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26] Length = 1433 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0193] gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0174] gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North America USA6153] gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0193] gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus anthracis str. A0174] Length = 1433 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1] gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1] Length = 1433 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|282932865|ref|ZP_06338262.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] gi|281302900|gb|EFA95105.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] Length = 1439 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 13/207 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +N+ ++FD+ETTGL S D IIEIGAV++ D R F F+ P+ S + Sbjct: 415 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTI 471 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L ITDE + + + F +F+ ++ HN +FDVGF+NA L+R + Sbjct: 472 NLTSITDEMVSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEI-T 528 Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-- 177 ++DTL ++R HP ++ L+SLCK+Y + + H H A D+ + K++ Sbjct: 529 QPVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFN 586 Query: 178 --GSQINFGFKTNEDRFFKEEKKTVPN 202 Q + G + +F + K+ P Sbjct: 587 DKFEQDDLGKMNDYAKFGQVYKRAKPT 613 >gi|260663976|ref|ZP_05864829.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii SJ-7A-US] gi|260561862|gb|EEX27831.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii SJ-7A-US] Length = 1439 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 13/207 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +N+ ++FD+ETTGL S D IIEIGAV++ D R F F+ P+ S + Sbjct: 415 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTI 471 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L ITDE + + + F +F+ ++ HN +FDVGF+NA L+R + Sbjct: 472 NLTSITDEMVSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEI-T 528 Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-- 177 ++DTL ++R HP ++ L+SLCK+Y + + H H A D+ + K++ Sbjct: 529 QPVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFN 586 Query: 178 --GSQINFGFKTNEDRFFKEEKKTVPN 202 Q + G + +F + K+ P Sbjct: 587 DKFEQDDLGKMNDYAKFGQVYKRAKPT 613 >gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42] gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42] Length = 1433 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLIDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44] gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44] Length = 1433 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GF+N ++ D + +IDTL Sbjct: 476 MLTDAPEVGEVFKKFEAWMGDH--TLVAHNASFDMGFLNVGFKKCGLDK-PKNPVIDTLE 532 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P + LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644] gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644] Length = 1448 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 8/173 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL ++ +++IE+ AV++ D K F+ F+ P G S + L ITD Sbjct: 428 YVVFDTETTGLSAQYNKVIELAAVKMKDGEKIGE-FEEFIDP-GHPLSQTTINLTHITDA 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + +F F +F + + HNA FDV F+N R P +DTL Sbjct: 486 MVRGSKTEEEVFKLFREFC--KGCIIVGHNATFDVDFMNTGYLRHGM-PEIKEPWVDTLP 542 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +AR + R L++L KR + + H H A+ D+ ++ KM+ + Sbjct: 543 LARILYSDMKRFTLDTLAKRLKVDLEHH--HRAIYDAEATGYIFYKMLADARE 593 >gi|291545334|emb|CBL18442.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp. SR1/5] Length = 1129 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 9/197 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + RIIEIGAV++ T+R F F+ P +L I D Sbjct: 102 FVVFDIETTGFSALTCRIIEIGAVKVEKGQITDR-FSTFVNPE-VPIPFRIEQLTSINDS 159 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + +F +F + +AHNA FD+ FI +R D +DT+ Sbjct: 160 MVLDAPVIEEVLPKFLEFC--EGCVMVAHNADFDMSFIIENCKRQGIS--DDFTYVDTVG 215 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P+ R L+++ K G+++ H H A+ D+ ++++++ + + + Sbjct: 216 MARFLLPALNRFKLDTVAKAVGVSLDHH--HRAVDDAACTAEIFVRFVKMLEERDIFDVD 273 Query: 188 NEDRFFKEEKKTVPNIS 204 +R T+ + Sbjct: 274 EMNRQGAVSPDTIRKLP 290 >gi|238854744|ref|ZP_04645074.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 269-3] gi|238832534|gb|EEQ24841.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 269-3] Length = 1405 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 13/207 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +N+ ++FD+ETTGL S D IIEIGAV++ D R F F+ P+ S + Sbjct: 381 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTI 437 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L ITDE + + + F +F+ ++ HN +FDVGF+NA L+R + Sbjct: 438 NLTSITDEMVSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEI-T 494 Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-- 177 ++DTL ++R HP ++ L+SLCK+Y + + H H A D+ + K++ Sbjct: 495 QPVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFN 552 Query: 178 --GSQINFGFKTNEDRFFKEEKKTVPN 202 Q + G + +F + K+ P Sbjct: 553 DKFEQDDLGKMNDYAKFGQVYKRAKPT 579 >gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4] gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4] Length = 1433 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GF+N ++ D + +IDTL Sbjct: 476 MLTDAPEVGEVFKKFESWMGDH--TLVAHNASFDMGFLNVGFKKCGLDK-PKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1] gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10] gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga petrophila RKU-1] gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10] Length = 1367 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 11/177 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGLD + D IIEIGAV++ D + + + P+ R+ S + ++ GIT E Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDE-YHTLIKPS-REISRRSSEITGITQE 415 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127 L++K S + EF F +N+ +AHNA FD F+ +++ + D P IDTL Sbjct: 416 MLENKRSIEEVLPEFLGFL--ENSIIVAHNANFDYRFLRLWIKKVMGLDWERP--YIDTL 471 Query: 128 SIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++A+ L+S+ ++ G+ H H AL D+ + + V+++ + +I Sbjct: 472 ALAKSLLKMRSYSLDSVVEKLGLGPFRH---HRALDDARVTAQVFLRFVEMMKKIGI 525 >gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442] gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442] Length = 1433 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GF+N ++ D + +IDTL Sbjct: 476 MLTDAPEVGEVFKKFESWMGDH--TLVAHNASFDMGFLNVGFKKCGLDK-PKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271] gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271] Length = 1433 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P + LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_36A2] gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_36A2] Length = 1449 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 8/197 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ Sbjct: 416 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 473 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 ITDE + ++P + +F DF +A +AHNA FD+GFI ++++ + Sbjct: 474 TSITDEQVANEPKIDEVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 530 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR P + L L K G+ + H A+ DS ++++I + + Sbjct: 531 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588 Query: 182 NFGFKTNEDRFFKEEKK 198 + + + F+ + Sbjct: 589 GLEYMKDINTGFEVNVR 605 >gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9842] gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222] gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto str. T04001] gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9842] gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto str. T04001] gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222] Length = 1433 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 1433 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17] gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17] Length = 1433 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GF+N ++ D + +IDTL Sbjct: 476 MLTDAPEVGEVFKKFESWMGDH--TLVAHNASFDMGFLNVGFKKCGLDK-PKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200] gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200] Length = 1435 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 478 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 534 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 591 >gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH1134] gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264] gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676] gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185] gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2] gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15] gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4] gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550] gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W] gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876] gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171] gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH1134] gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus B4264] gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876] gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W] gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550] gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4] gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15] gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2] gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185] gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676] gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pakistani str. T13001] gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171] Length = 1433 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 1433 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803] gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803] Length = 1433 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342] gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342] Length = 1433 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579] gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24] gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579] gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24] Length = 1435 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 478 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 534 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 591 >gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 1435 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 478 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 534 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 591 >gi|256851261|ref|ZP_05556650.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 27-2-CHN] gi|260660685|ref|ZP_05861600.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 115-3-CHN] gi|282934729|ref|ZP_06339972.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] gi|297206128|ref|ZP_06923523.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16] gi|256616323|gb|EEU21511.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 27-2-CHN] gi|260548407|gb|EEX24382.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 115-3-CHN] gi|281301304|gb|EFA93605.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus jensenii 208-1] gi|297149254|gb|EFH29552.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16] Length = 1439 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 13/206 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +N+ ++FD+ETTGL S D IIEIGAV++ D R F F+ P+ S + Sbjct: 415 MTYENR-EFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIER-FDEFINPH-HPLSETTI 471 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L ITDE + + + F +F+ ++ HN +FDVGF+NA L+R + Sbjct: 472 NLTSITDEMVSKADDEAEVIKRFQEFYGDR--PLCGHNVQFDVGFVNAALRRSGLKEI-T 528 Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-- 177 ++DTL ++R HP ++ L+SLCK+Y + + H H A D+ + K++ Sbjct: 529 QPVVDTLEVSRLLHPEQTKHTLDSLCKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFN 586 Query: 178 --GSQINFGFKTNEDRFFKEEKKTVP 201 Q + G + +F + K+ P Sbjct: 587 DKFEQDDLGKMNDYAKFGQVYKRAKP 612 >gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 1433 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407] gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407] gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis CT-43] Length = 1433 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270] gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270] Length = 1431 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 9/172 (5%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N +VFDIETTGL + I EIGAV ++ K F + P ++ S E ++ G Sbjct: 413 NFDTFVVFDIETTGLSHLKNNITEIGAVR-VESGKIVDVFNGLVNPE-QEISQEITEITG 470 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E + DKP S I +F +F +NA ++AHNA+FD+ FI +R+N + I Sbjct: 471 ITNEMVADKPLISEIMPKFLEF--SKNAVFVAHNAEFDISFIKTNCKRLNLEF--NPTFI 526 Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+ AR P + + LN+LCK G+ + + H A D+ + + ++++ Sbjct: 527 DTMGFARAILPHLKNHKLNTLCKELGVNLLNH--HRASFDAEACAGILLELI 576 >gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 1454 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 16/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ Sbjct: 421 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 478 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 ITDE + ++P + +F DF +A +AHNA FD+GFI ++++ + Sbjct: 479 TSITDEQVANEPKIDEVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 535 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180 +IDTL +AR P + L L K G+ + H A+ DS ++++I + + Sbjct: 536 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLDKYKEK 593 Query: 181 -------INFGFKTN 188 IN GF+ N Sbjct: 594 GLEYMKDINVGFEVN 608 >gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 1454 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 16/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ Sbjct: 421 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 478 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 ITDE + ++P + +F DF +A +AHNA FD+GFI ++++ + Sbjct: 479 TSITDEQVANEPKIDEVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 535 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180 +IDTL +AR P + L L K G+ + H A+ DS ++++I + + Sbjct: 536 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLDKYKEK 593 Query: 181 -------INFGFKTN 188 IN GF+ N Sbjct: 594 GLEYMKDINVGFEVN 608 >gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia goodfellowii F0264] gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia goodfellowii F0264] Length = 1438 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 100/203 (49%), Gaps = 23/203 (11%) Query: 1 MIRKNKMR------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 MI K R +VFDIETTGLD D+IIEIGA++L + F VF+ P Sbjct: 398 MITKPADRLIEDEIYVVFDIETTGLDPYKDKIIEIGAIKLKGKEIIDE-FSVFINPEI-D 455 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 E L IT++ +KD ++ +F +F ++ +AHNAKFDVGFIN + + + Sbjct: 456 IPEEITALTNITNDMVKDAEKVETVLPKFLEFC--KDTTVVAHNAKFDVGFINQKAKNLG 513 Query: 115 KDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +IDTL AR P R L + + + + + H A+ D+ ++++ K Sbjct: 514 LEYSPS--VIDTLHWARILLPEQKRFGLKYIANYFNVVLDNH--HRAVDDAKATAEIFQK 569 Query: 174 MM--------VGGSQINFGFKTN 188 + + S+IN +TN Sbjct: 570 FLNMVLSRGVLKLSEINQELQTN 592 >gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2] gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2] Length = 1438 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 8/174 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL ++IIEI AV++ + + +R + F+ P+ R +L I DE Sbjct: 421 YVVFDIETTGLSVTQNKIIEIAAVKMHEGKEIDR-YATFVNPHER-IPYNIQQLTNINDE 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + EF F +A +AHNA+FD+GFI A L+++ P + ++DTL Sbjct: 479 MVKDAPDVEPVMKEFVAFAG--DAVLVAHNARFDIGFIQATLRKMGL-PEMTNPVLDTLE 535 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +AR P + LN+L +Y + + S H A+ D+ L++V ++ QI Sbjct: 536 LARLLFPTMKNHRLNTLTSKYKVALE--SHHRAIDDTVALTEVLNGLLNDAEQI 587 >gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2] gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2] Length = 1367 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 11/177 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGLD + D IIEIGAV++ D + + + P+ R+ S + ++ GIT E Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDE-YHTLIKPS-REISRRSSEITGITQE 415 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127 L++K S + EF F +N+ +AHNA FD F+ +++ + D P IDTL Sbjct: 416 MLENKRSIEEVLPEFLGFL--ENSIIVAHNANFDYRFLRLWIKKVMGLDWERP--YIDTL 471 Query: 128 SIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++A+ L+S+ ++ G+ H H AL D+ + + V+++ + +I Sbjct: 472 ALAKSLLKMRSYSLDSVVEKLGLGPFRH---HRALDDARVTAQVFLRFVEMMKKIGI 525 >gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1433 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F + + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEKWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|225572667|ref|ZP_03781422.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM 10507] gi|225039967|gb|EEG50213.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM 10507] Length = 1464 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG + +IIEIGAV + D R F F+ P +L I D Sbjct: 440 FVVFDLETTGFSPMSCQIIEIGAVRVEDGKIVER-FSTFVNPK-VPIPFRIEQLTSINDS 497 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + +F +F + A +AHNA FD+ F+ R+ IDT+ Sbjct: 498 MVMDAPVIEEVLPKFLEFCS--GAVMVAHNADFDMSFVEFNCDRLGIP--HDFTYIDTVG 553 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR PS R L+++ K I + H H A+ D+ +D+++K + Sbjct: 554 MARFLLPSLNRFKLDTVAKALEIPLGHH--HRAVDDAACTADIFVKFV 599 >gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] Length = 1433 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046] Length = 1443 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 96/176 (54%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTG + D IIE+ AV++ + + TF+ F P+ RK + + ++L ITD+ Sbjct: 429 YIVFDVETTGFSNVYDTIIELAAVKIKNGQVID-TFERFSNPH-RKLTAKIIELTHITDD 486 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + P S + EF DF + +AHNA FD+GF+ + + P IDT+ Sbjct: 487 MLVNAPELSDVIREFHDFIG--DGVVVAHNAAFDLGFLYVAYKNAGIEVRHPG--IDTVE 542 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++R +P + ++L +L K+Y I ++ H A+ D+ ++++ ++ + + Sbjct: 543 LSRLVNPGQKSHNLKTLTKKYNIELTQH--HRAIYDTEATGELFLHLLKQAADLGI 596 >gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3] gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3] Length = 1433 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TNNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|303256972|ref|ZP_07342986.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] gi|302860463|gb|EFL83540.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] Length = 260 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 82/236 (34%), Positives = 127/236 (53%), Gaps = 21/236 (8%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTG+ +K DRIIEIG VEL ++ T++ F ++ P R+ E +++H I Sbjct: 1 MREICLDTETTGMAAKEGDRIIEIGCVELGEHGLTDKNFHEYIDPE-RQMEAEVIRVHKI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----S 121 T+EFL KP F+ I +F +F Q A I HNA+FD+GF+N EL+++ K ++ Sbjct: 60 TNEFLVGKPKFADIADKFIEFV--QGARLIIHNAQFDIGFLNEELRKLGKPSMEEICGKD 117 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYIKMMVGGS 179 IID++ +A+ P N L++LCKR I + R K HGALLD+ LL VY+ + Sbjct: 118 NIIDSMELAKAAFPQMHNSLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYLVLKQQQG 177 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 + +P R T+E+L E+++ ++ + K A Sbjct: 178 ILEIDAAPVSADVHDISDVELP-----------VIRATEEDLSENERVLEMVRKAA 222 >gi|229824922|ref|ZP_04450991.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC 49176] gi|229790925|gb|EEP27039.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC 49176] Length = 1463 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG KN RIIEIGAV+++ ++ F F+ P + E KL IT + Sbjct: 436 VVFDIETTGFGPKNCRIIEIGAVKVMGGKVIDK-FSAFVNPK-QSIPEEITKLTSITQDM 493 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P I F +F + +AHNA FD FI ++R+ + + I DT++I Sbjct: 494 VINEPEIDVILPAFLEFC--KGCFLVAHNASFDTSFIFENMKRLGLN--EDFTIADTVTI 549 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P +N L+++ +R GIT+ H H A+ D+ +++YIK+ Sbjct: 550 SRVLLPGLKNYKLDTVAERLGITLEHH--HRAVDDAGCTAEIYIKL 593 >gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551] gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551] Length = 1436 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +R F+ F P+ S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKMKEGEIIDR-FERFANPH-HPLSATTIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P S + +F ++ ++ +AHNA FD+GF+N LQ+I + +IDTL Sbjct: 479 MVQNAPEISEVLRDFHEWMG--DSILVAHNASFDMGFLNMGLQKIGLEKAANG-VIDTLE 535 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R +P + LN+L K++ I + H A+ D+ + KM+ Sbjct: 536 LGRFLYPHMKNHRLNTLAKKFDIELVQH--HRAIYDAETTGYLLNKML 581 >gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108] gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102] gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1] gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108] gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102] gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1] Length = 970 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273] gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272] gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272] gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273] Length = 1433 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621] gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621] Length = 1433 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGIEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|118479040|ref|YP_896191.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al Hakam] gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al Hakam] Length = 972 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 478 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 534 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 535 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 591 >gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319] gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319] Length = 1436 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +R F+ F P+ S ++L GITD+ Sbjct: 421 YVVFDVETTGLSAVYDTIIELAAVKMKEGEIIDR-FERFANPH-HPLSATTIELTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P S + +F ++ ++ +AHNA FD+GF+N LQ+I + +IDTL Sbjct: 479 MVQNAPEISEVLRDFHEWMG--DSILVAHNASFDMGFLNMGLQKIGLEKAANG-VIDTLE 535 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R +P + LN+L K++ I + H A+ D+ + KM+ Sbjct: 536 LGRFLYPHMKNHRLNTLAKKFDIELVQH--HRAIYDAETTGYLLNKML 581 >gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM 16841] gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM 16841] Length = 1512 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ++IIEIGAV+++ T+R F F+ P +L I D+ Sbjct: 489 FVVFDLETTGFSPDKNKIIEIGAVKVVGGVITDR-FSTFVNPE-VPIPFRIEELTSIKDD 546 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P I EF F + A +AHNA+FD+ FI + + IIDT++ Sbjct: 547 MVIDAPKIEEILPEFMKFC--EGAIMVAHNAEFDMSFIKKNCKDQGIE--REFTIIDTVA 602 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +AR P+ R L+++ K +++ + H A+ D+ +++++K + + Sbjct: 603 LARILLPNLNRFKLDTVAKALNVSLENH--HRAVDDAACTAEIFVKFIEMLKERGM 656 >gi|167464458|ref|ZP_02329547.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae BRL-230010] Length = 686 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 9/202 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I+ + +VFDIETTGL N++IIEI V++ D + R + F+ P+ K + Sbjct: 414 IKLKEATYVVFDIETTGLSVINNKIIEIAGVKMKDGKEIGR-YTTFIDPH-EKIPYNIQQ 471 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE ++ P + +F +F +A +AHNA+FD+GFI A L+ I L P+ Sbjct: 472 LTNITDEMVQGAPDIAEELPKFVEFVG--DAVLVAHNARFDMGFIQANLKNIGMPEL-PN 528 Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL +AR PS +N LN+L ++ +++ + H A+ D+ L + ++ + Sbjct: 529 PSLDTLELARLLFPSLKNHRLNTLADKFKVSLENH--HRAIDDTVALMHILNHLLQEAEE 586 Query: 181 INF-GFKTNEDRFFKEEKKTVP 201 N D K+ + T P Sbjct: 587 QNLTQLNRLNDHVGKDLRNTRP 608 >gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1] gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum reducens MI-1] Length = 1426 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 8/172 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTG + D IIEIGAV+ L+ + R F + P ++ E KL GITDE Sbjct: 415 VIIDFETTGFSPQTDEIIEIGAVKYLNGEEVGR-FGTLVNPK-KEIPFEVTKLTGITDEM 472 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P + +F E A +AHNA FD+ F+ L++ K + + IDTL + Sbjct: 473 VKDAPDGKEALTALSEFMGE--AVLVAHNASFDLSFLRVGLRKYLKQEV-TNPAIDTLGV 529 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 AR P+ + + LN+L K + I +++ H A+ D+ + ++ + ++ Sbjct: 530 ARVLFPNLKNHKLNTLVKEFKIELTNH--HRAVDDASATAKLWQIFLRKLAE 579 >gi|210608497|ref|ZP_03287873.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787] gi|210152988|gb|EEA83994.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787] Length = 1269 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 56/197 (28%), Positives = 95/197 (48%), Gaps = 9/197 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + D IIEIGAV++ + T++ + F+ P E +L I D Sbjct: 456 YVVFDIETTGFSAVEDHIIEIGAVKVENGKITDK-YSTFVNPE-VPIPFEITQLTSIDDS 513 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P I +F +F +A +AHNA FDVGFI + +N + +DT++ Sbjct: 514 MVMDAPKIDVILPQFLEFVG--DASLVAHNAGFDVGFIEQNCKNLNIE--QEFVSVDTVA 569 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P+ S+ LN + K I++ + H A+ D+ +++++K + + Sbjct: 570 LARVLLPTLSKYKLNIVAKALNISLENH--HRAVDDAGATAEIFVKFVEMLKEREITTLK 627 Query: 188 NEDRFFKEEKKTVPNIS 204 + F V + Sbjct: 628 GVNAFGATNPDAVKKMP 644 >gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603] gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603] Length = 1433 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 98/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN +++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKVGIEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus thuringiensis serovar finitimus YBT-020] Length = 970 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196] gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196] Length = 1433 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGIEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4] gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis KBAB4] Length = 1433 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGIEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] Length = 1228 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG +S NDRIIEIGAV +++ + TF F+ P R + +L ITD+ Sbjct: 202 YVVFDIETTGFNSVNDRIIEIGAVRVVEG-EIKETFSEFVNPE-RPIPYKITQLTTITDD 259 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + I +F F + + +AHNA FD GFI +R+N ++DTL Sbjct: 260 MVKDAGTIEEILPQFLKFC--EGSVLVAHNAGFDTGFIRENAKRLNLPY--DHTVVDTLG 315 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +AR + L+++CK I + + H A+ D+ ++++ + + Sbjct: 316 LARCLMGHLGKFTLDNICKHLNIILE--THHRAVDDATATGKIFVEFISMLKE 366 >gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048] gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048] Length = 1435 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 478 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGIEK-TKNPVIDTLE 534 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 591 >gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681] gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681] Length = 1438 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 8/174 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL ++IIEI AV++ D + +R + F+ P+ R +L I DE Sbjct: 421 YVVFDIETTGLSVTQNKIIEIAAVKMHDGKEVDR-YATFVNPHER-IPYNIQQLTNINDE 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + EF F +A +AHNA+FDVGFI A L+ + P + ++DTL Sbjct: 479 MVKDAPDVEPVMKEFVAFAG--DAVLVAHNARFDVGFIQATLRNMGL-PEMTNPVLDTLE 535 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +AR P + LN+L +Y + + S H A+ D+ L++V ++ QI Sbjct: 536 LARLLFPTMKNHRLNTLTTKYKVALE--SHHRAIDDTVALTEVLNGLLNDAEQI 587 >gi|253682510|ref|ZP_04863307.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum D str. 1873] gi|253562222|gb|EES91674.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum D str. 1873] Length = 1443 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 92/165 (55%), Gaps = 9/165 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG S+ D+IIEIGAV++ + + + +F F+ P K +L IT++ Sbjct: 430 FVVFDLETTGFSSEYDKIIEIGAVKIKNGNIID-SFSTFVNPEI-KIPYNITELTSITND 487 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + ++ +F +F +++ +AHNA FD+ FI ++ D ++DT+ Sbjct: 488 DVKNADTIDNVLPKFMEFC--KDSVLVAHNANFDMSFIRKNCNDLSIDI--NYTVMDTVP 543 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +A+ P R LN++ K G+++ + H A+ D+ +D+ + Sbjct: 544 LAKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATADILL 586 >gi|289424040|ref|ZP_06425828.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus anaerobius 653-L] gi|289155559|gb|EFD04236.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus anaerobius 653-L] Length = 1440 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 9/172 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +VFDIETTGL +D + EIGAV++ + + +F F+ P S + +L I Sbjct: 423 DQTFVVFDIETTGLSPHSDNLTEIGAVKVQN-CEIVDSFSTFVNPK-MDISYQIQELTRI 480 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+E +KD PS EF +F +++ +AHNA FD GFI + Q++ + +D Sbjct: 481 TNEMVKDAPSLEEALPEFLEF--AKDSVLVAHNADFDTGFIYQKCQQLGLE--YNFEKVD 536 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 TL++AR + + R L+ +CK G+ ++ H A+ D+ ++V+IK + Sbjct: 537 TLTLARIINTNLKRFSLDKVCKEMGVVLAGH--HRAVNDAQATAEVFIKYLE 586 >gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] Length = 1449 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 8/193 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ Sbjct: 416 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 473 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 ITDE + ++P + + +F DF +A +AHNA FD+GFI ++++ + Sbjct: 474 TSITDEQVANEPKINEVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYKCS 530 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR P + L L K G+ + H A+ DS ++++I + + Sbjct: 531 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588 Query: 182 NFGFKTNEDRFFK 194 + + + F+ Sbjct: 589 GLEYMKDINTGFE 601 >gi|42782909|ref|NP_980156.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987] gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus ATCC 10987] Length = 970 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGLEK-TKNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN+LCK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKEVIEKGFEYH 589 >gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16] gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16] Length = 1430 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 103/196 (52%), Gaps = 10/196 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE+ AV++ + + T++ F P S ++L GITD+ Sbjct: 416 YVVFDVETTGLSAVYNTIIELAAVKIKNGEIID-TYESFADPK-EPLSATIIELTGITDD 473 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + + +F +F NA +AHNA FD+GF+N +++ + + +IDTL Sbjct: 474 MVQGAPEPAEVLKQFREFAG--NATLVAHNASFDIGFLNVGYKKLGFSEV-TNPVIDTLE 530 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFGF 185 + R +P +N LN+LCK++ I + S H A+ D+ + + KM+ +I + Sbjct: 531 LGRFLYPELKNHRLNTLCKKFDIELV--SHHRAIYDTQATAYLLWKMVKDAAEKEIVYHD 588 Query: 186 KTNEDRFFKEEKKTVP 201 + N + P Sbjct: 589 ELNNHMGQGNFHRQRP 604 >gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1] gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1] Length = 1449 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 8/193 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ Sbjct: 416 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 473 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 ITDE + ++P + +F DF +A +AHNA FD+GFI ++++ + Sbjct: 474 TSITDEQVANEPKIDKVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 530 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR P + L L K G+ + H A+ DS ++++I + + Sbjct: 531 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588 Query: 182 NFGFKTNEDRFFK 194 + + + F+ Sbjct: 589 GLEYMKDINTGFE 601 >gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168] gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168] Length = 1397 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 28/233 (12%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL+ + IIEIGAV++ + F F+ P G + +L GIT+E Sbjct: 385 FVVFDLETTGLNKFKNEIIEIGAVKVKSGKVIDE-FSSFVKP-GESIPNKITELTGITNE 442 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + +F +F + + +AHNA FD GF+ L++ + + ++DTL+ Sbjct: 443 MVSRAPDIEGVIGDFLEFID--GSILVAHNADFDYGFLQVALKKTGQGDIS-YPVLDTLT 499 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R P S + LN+L + + + + H A+ D+ S+++I + Sbjct: 500 LSRALLPDLSNHKLNTLARHLNVRLDNH--HRAVEDARATSEIFINFL------------ 545 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 E +TVP I+ L T+I EL + I K + D Y Sbjct: 546 --SNIKNEGIETVPGINR------LSTKINWRELPTYHTVIFAKNKQGLKDIY 590 >gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_33] gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_33] Length = 1449 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 8/193 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ Sbjct: 416 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 473 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 ITDE + ++P + +F DF +A +AHNA FD+GFI ++++ + Sbjct: 474 TSITDEQVANEPKIDKVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 530 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR P + L L K G+ + H A+ DS ++++I + + Sbjct: 531 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588 Query: 182 NFGFKTNEDRFFK 194 + + + F+ Sbjct: 589 GLEYMKDINTGFE 601 >gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3] gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3] Length = 1435 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 420 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + +IDTL Sbjct: 478 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGL-AKTNNPVIDTLE 534 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 591 >gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28] gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28] Length = 1433 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGL-AKTNNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29] gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29] Length = 1433 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D +IE+ AV++ +R F+ F P+ + S ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDR-FESFANPH-QPLSATIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P +F +F ++ + +AHNA FD+GFIN ++ + +IDTL Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDH--TLVAHNASFDMGFINVGFKKAGL-AKTNNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +AR P +N LN++CK+ I ++ H A+ D+ + +KM+ + F + Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYH 589 >gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4] Length = 1436 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 10/184 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL + D IIE+ AV++ D +R F+ F P+ S + L GITD+ Sbjct: 421 YIVFDVETTGLSANYDTIIELAAVKVFDGEIIDR-FERFANPH-HPLSATTINLTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P S + ++F + ++ +AHNA FD+GF+N QR + +IDTL Sbjct: 479 MVKDAPEVSEVVTDFKKW--AEDGILVAHNASFDMGFLNISYQRAGLKKAS-NPVIDTLE 535 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINFGF 185 +AR +PS +N LN+L K+ + ++ H A+ D+ + K++ +I + Sbjct: 536 LARFLYPSMKNHRLNTLAKKLDVELTQH--HRAIYDAEATGYILAKLLKETYEKEIKYHD 593 Query: 186 KTNE 189 + N+ Sbjct: 594 QLND 597 >gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9] gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9] Length = 1439 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 114/235 (48%), Gaps = 15/235 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL N +IIE+ V++ + +R F F+ P+ K +L ITDE Sbjct: 423 YVVFDIETTGLSIINCKIIELAGVKMRGGQEIDR-FSTFINPH-EKIPYHIQQLTNITDE 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P EF +F +A +AHNA+FD+GFI A + I P + ++DTL Sbjct: 481 MVVDAPELEPKLREFVEFIG--DAVLVAHNARFDIGFIQANCKAIGL-PEVMNPVLDTLE 537 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GFK 186 +AR HPS +N LN+L RY I + + H A+ DS L V ++ ++ N G Sbjct: 538 LARFLHPSMKNHRLNTLSARYKINLENH--HRAIDDSIALGGVLFGLIKDCNERNVTGLH 595 Query: 187 TNEDRFFKEEKKTVP---NISLLKR--DKPLFTRITKEELDEHDKTIQTLGKNAI 236 D + + P I L K LF I+ EH K + + K+ + Sbjct: 596 QLNDYVGLDLSNSRPFHCGIYALNAVGKKNLFKLISLSH-TEHFKRVACIPKSKL 649 >gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2] gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans NG80-2] Length = 1442 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 8/185 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + +VFD+ETTGL + + IIE+ AV++ D +R F F P+ S ++L Sbjct: 421 RLSDETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANPH-HPLSVTTMEL 478 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GITDE +KD P + F D+ ++ AHNA FD+GF+NA L ++ + + Sbjct: 479 TGITDEMVKDAPDVEEVLRRFIDWVG--DSTLAAHNASFDIGFLNAGLAKMGLGKVI-NP 535 Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR +P +N LN+LCK++ I ++ H A+ D+ + ++++ + Sbjct: 536 VIDTLELARFLYPDLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGHLLMRLLKEAEER 593 Query: 182 NFGFK 186 + Sbjct: 594 GILYH 598 >gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16] gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16] Length = 1434 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 8/185 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + +VFD+ETTGL + + IIE+ AV++ D +R F F P+ S ++L Sbjct: 413 RLSDETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANPH-HPLSVTTMEL 470 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GITDE +KD P + F D+ ++ AHNA FD+GF+NA L ++ + + Sbjct: 471 TGITDEMVKDAPDVEEVLRRFIDWVG--DSTLAAHNASFDIGFLNAGLAKMGLGKVI-NP 527 Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR +P +N LN+LCK++ I ++ H A+ D+ + ++++ + Sbjct: 528 VIDTLELARFLYPDLKNHRLNTLCKKFDIELTQH--HRAIYDAEATGHLLMRLLKEAEER 585 Query: 182 NFGFK 186 + Sbjct: 586 GILYH 590 >gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656] gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656] Length = 1510 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 12/217 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFDIETTG + ++IIEIGAV+++ +R + F+ P +L I Sbjct: 477 DDKYVVFDIETTGFSPEKNKIIEIGAVKVIGGEIVDR-YSTFINPE-VPIPFRIEELTSI 534 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+ + P+ I +F +F ++ +AHNA FD+ FI + + I+D Sbjct: 535 RDDMVITSPTVDVILPQFMEFC--KDCIMVAHNADFDMSFIKRNCALLGME--CNPTIVD 590 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 T+++AR P R L+++ K I++ H H A+ D+ +++++K + Sbjct: 591 TVALARVLLPQLNRFKLDTVAKALNISLDHH--HRAVDDAACTAEIFVKFIEKLKDRGI- 647 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 ++ D K +V I + + + Sbjct: 648 --SSLDEVNALAKSSVEMIRKMPTYHAIILATCDQGR 682 >gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum WAL-14163] gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673] gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum WAL-14163] gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673] Length = 1511 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 91/175 (52%), Gaps = 9/175 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG +RIIEIGAV + + ++ F F+ P+ E KL GI D Sbjct: 487 VVFDIETTGFSPLKNRIIEIGAVRVEEGRIVDK-FSSFVNPD-VPIPFEIEKLTGINDNM 544 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P + EF +F + A +AHNA FD+ FI ++ + ++DT+S+ Sbjct: 545 VLDAPKIDRVLPEFLEFC--RGAVMVAHNAGFDISFIKENARQQGLEF--NPTVLDTVSL 600 Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 AR P+ R L+++ K I +++ H A+ D+ ++++++ + + + Sbjct: 601 ARVLLPNLNRFKLDTVAKELKINLANH--HRAVDDAGATAEIFVRFIKMLKERDI 653 >gi|325126001|gb|ADY85331.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 1445 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 8/175 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ S + Sbjct: 419 MKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE ++ + + +F DF+ N HN +FDVGF++A L+R P Sbjct: 477 LTSITDEMVQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++R HP SR+ L+SLC++Y + + H H A D+ + K++ Sbjct: 534 PVVDTLEVSRLLHPEQSRHTLDSLCRKYNVPLEHH--HRANQDAEATGYLMFKLL 586 >gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium praevalens DSM 2228] Length = 1404 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 8/169 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL+ IIEIGAV+ K F+ F+ P G + + ++ GI D Sbjct: 392 FIVFDLETTGLNPSQHEIIEIGAVKYQGGKKIAE-FESFINP-GVRIPAKITEITGINDR 449 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ P + ++F +F +AHNA FD GFI L+++ + D ++DTL Sbjct: 450 MVKNAPGLEKVINDFIEFAGTG--VLVAHNADFDYGFIRTALEKLEIEK-DDYTVLDTLG 506 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++R S+ + LN+L K +G+ + + H AL D++ ++V K++ Sbjct: 507 LSRAVVKDSKNHKLNTLAKYFGVDLENH--HRALDDANATAEVLAKLLE 553 >gi|307264910|ref|ZP_07546472.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306920168|gb|EFN50380.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 1407 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 59/201 (29%), Positives = 105/201 (52%), Gaps = 9/201 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + VFDIETTGL + ND IIEIGAV++ + + TF+ F+ P S KL GI Sbjct: 391 EDEFTVFDIETTGLSNINDEIIEIGAVKIKEGKIID-TFETFVNPKI-PISSFITKLTGI 448 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +KD PS I F +F N+ +AHNA FDV FI ++ ++ N + + ++D Sbjct: 449 DESIVKDAPSIEEILPNFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNV--NNAVLD 504 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 TL ++R + +N L++L + + + H H A+ D+ ++++IK + ++ Sbjct: 505 TLELSRHLYKDLKNYKLDTLSEHLQVKLEHH--HRAVDDARATAEIFIKTIDRLKELGVK 562 Query: 185 FKTNEDRFFKEEKKTVPNISL 205 + + +E + + + + Sbjct: 563 KVKDINAILRESEVDIRKLPV 583 >gi|253579638|ref|ZP_04856907.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849139|gb|EES77100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1489 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 9/169 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFDIETTG S +IIEIGAV + + T+R F F+ P +L I D Sbjct: 461 RFVVFDIETTGFSSLTCQIIEIGAVLVENGEITDR-FSTFVNPK-VPIPFRIEQLTSIND 518 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P+ + +F +F ++A +AHNA FD+GFI R+ +DT+ Sbjct: 519 SMVMDAPTIEEVLPKFLEF--SKDAVMVAHNADFDMGFIMKNCDRLGI--AHDFTYVDTV 574 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P+ R L+++ K G+++ + H A+ D+ +++++K + Sbjct: 575 GMARFLLPALNRFKLDTVAKAVGVSLENH--HRAVDDAACTAEIFVKFV 621 >gi|104774216|ref|YP_619196.1| DNA polymerase III, alpha subunit ( type) (PolC) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423297|emb|CAI98138.1| DNA polymerase III, alpha subunit (gram-positive type) (PolC) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 1411 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 8/175 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ S + Sbjct: 385 MKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTIN 442 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE ++ + + +F DF+ N HN +FDVGF++A L+R P Sbjct: 443 LTSITDEMVQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQ 499 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++R HP SR+ L+SLC++Y + + H H A D+ + K++ Sbjct: 500 PVVDTLEVSRLLHPEQSRHTLDSLCRKYNVPLEHH--HRANQDAEATGYLMFKLL 552 >gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens C str. JGS1495] gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens C str. JGS1495] Length = 1449 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D + +F F+ P + +L IT Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPK-VNIPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+ + +F +F ++ +AHNA FDVGFI L + K +P ++DT+ Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +AR +P + LN + K GI++ + H A+ D+ +++ Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENH--HRAVDDAKATAEIL 590 >gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125] gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125] Length = 1433 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 60/197 (30%), Positives = 108/197 (54%), Gaps = 10/197 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++IIE+ AV++ + +R F+ F P+ + ++L GITD+ Sbjct: 419 FVVFDVETTGLSAVYNKIIELAAVKVKNGEIIDR-FERFADPH-EPLTNTIIELTGITDD 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK +P + +EF F +A +AHNA FD+GF+N Q++ + +IDTL Sbjct: 477 MLKGQPEVEQVLNEFHAFIG--DAVLVAHNASFDMGFLNTGFQKMGLGEA-KNPVIDTLE 533 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--INFGF 185 + R +P+ +N LN+LCK++ I + S H A+ D+ + +M+ ++ I + Sbjct: 534 LGRFLYPTLKNHRLNTLCKKFDIELV--SHHRAIYDAEATGHLLWRMVKDATERDILYHD 591 Query: 186 KTNEDRFFKEEKKTVPN 202 + N++ + P+ Sbjct: 592 QLNDNMGEGNFHRQRPS 608 >gi|167766537|ref|ZP_02438590.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1] gi|167711660|gb|EDS22239.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1] Length = 1473 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG +S NDRIIEIGAV +++ + TF F+ P R + +L ITD+ Sbjct: 447 YVVFDIETTGFNSVNDRIIEIGAVRVVEG-EIKETFSEFVNPE-RPIPYKITQLTTITDD 504 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + I +F F + +AHNA FD GFI +R+N ++DTL Sbjct: 505 MVKDAGTIEEILPQFLKFCA--GSVLVAHNAGFDTGFIRENAKRLNLPY--DHTVVDTLG 560 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +AR + L+++CK I + + H A+ D+ ++++ + + Sbjct: 561 LARCLMGHLGKFTLDNICKHLNIILE--THHRAVDDATATGKIFVEFISMLKE 611 >gi|291558576|emb|CBL37376.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing bacterium SSC/2] Length = 1470 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG +S NDRIIEIGAV +++ + TF F+ P R + +L ITD+ Sbjct: 444 YVVFDIETTGFNSVNDRIIEIGAVRVVEG-EIKETFSEFVNPE-RPIPYKITQLTTITDD 501 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + I +F F + +AHNA FD GFI +R+N ++DTL Sbjct: 502 MVKDAGTIEEILPQFLKFCA--GSVLVAHNAGFDTGFIRENAKRLNLPY--DHTVVDTLG 557 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +AR + L+++CK I + + H A+ D+ ++++ + + Sbjct: 558 LARCLMGHLGKFTLDNICKHLNIILE--THHRAVDDATATGKIFVEFISMLKE 608 >gi|146276555|ref|YP_001166714.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] gi|145554796|gb|ABP69409.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] Length = 695 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 7/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61 R + +VFD ETTGL D I++I AV +++ + F + P R P + + Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVFDTLVNP-RRPIPPSSTE 548 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGITD + D P + + +F F + A +AHNA FD+ F+ + D + Sbjct: 549 VHGITDAMVADAPDMTEVGRQFHKF--AEGAVLVAHNAPFDMEFLRR--AELLIDRRFDN 604 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+DT+ ++ + + L++L R GITI ++H A+ D+ +D ++K++ Sbjct: 605 PILDTVLLSAVLFGQTEVHSLDALAHRLGITIPEEARHTAIGDTVATADAFLKLL 659 >gi|225026305|ref|ZP_03715497.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353] gi|224956369|gb|EEG37578.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353] Length = 1484 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 9/177 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG +D IIEIGAV+ + K + + VF+ P R +L I D Sbjct: 453 YVVFDLETTGFSPIHDAIIEIGAVK-VSKGKISDHYSVFVNPQ-RPIPLRITELTSIDDS 510 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D S I EF F + +AHNA+FDV FI +R + ++DT+ Sbjct: 511 MVADAKSIEEILPEFLSFC--EGCSLVAHNAEFDVSFIEENAKRQGFE--TDFTVLDTVQ 566 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 +AR + LN++CKR I H H A+ D+ + ++V+++ + + + Sbjct: 567 MARLLLTDLNKFKLNTVCKRLNIKQEHH--HRAVDDARVTAEVFLRFVEMLEEQDVH 621 >gi|300812566|ref|ZP_07092983.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496439|gb|EFK31544.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 1402 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 8/175 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ S + Sbjct: 376 MKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTIN 433 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE ++ + + EF DF+ N HN +FDVGF++A L+R P Sbjct: 434 LTSITDEMVQAADDEAVVIKEFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQ 490 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++R HP SR+ L+SLC++Y + + H H A D+ + K++ Sbjct: 491 PVVDTLEVSRLLHPEQSRHTLDSLCRKYNVALEHH--HRANQDAEATGYLMFKLL 543 >gi|225568406|ref|ZP_03777431.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM 15053] gi|225162634|gb|EEG75253.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM 15053] Length = 1487 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 9/199 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG S D+IIEIGAV+ ++ + F F+ P +L GITD+ Sbjct: 448 FVVFDLETTGFSSIKDKIIEIGAVK-VEGGRITEKFSTFVDPKI-PIPFRITQLTGITDQ 505 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P + F +F +A +AHNA FDVGFI+ + ++ P +DT++ Sbjct: 506 MVMDAPEIEAALPAFLEFAG--DAALVAHNAGFDVGFIDQNCRYMDITP--DFTAVDTVA 561 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R P+ S+ LN + K I++ + H A+ D+ ++++++ + + Sbjct: 562 MSRILLPTLSKFKLNVVAKALNISLENH--HRAVDDAGATAEIFVRFVDMLKERGIHTLA 619 Query: 188 NEDRFFKEEKKTVPNISLL 206 ++F + + Sbjct: 620 RLNQFGSSNANAIRKLPSF 638 >gi|224540943|ref|ZP_03681482.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM 15897] gi|224526094|gb|EEF95199.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM 15897] Length = 1444 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 8/190 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ N + + FD+ETTGL +D I EIGAV++ + + R Q F+ + + S + + Sbjct: 397 LKLNDLTYVSFDLETTGLSQIDDYITEIGAVKIKNGLEVGR-LQTFIK-SPKPISKKITE 454 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L IT+E +++ P+ +FF + IAHN +FD+G ++ L+R+ K P+ + Sbjct: 455 LTSITNEDIRNAPTIEEFMPRLMEFFGDD--LLIAHNGRFDIGMLDKALERMGKSPIS-N 511 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 IDTL ++RR P R L ++C+ Y I + H A D+ +LS + M+ Sbjct: 512 PWIDTLPLSRRLIPLQRSYRLGAVCRFYHIPYDTEAAHRADYDAEVLSHSFNVML--QDL 569 Query: 181 INFGFKTNED 190 I GFKT ++ Sbjct: 570 IKKGFKTIDE 579 >gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b] gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b] Length = 1459 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG D ND+IIEIGAV++ F F+ P + +L ITDE Sbjct: 425 YVVFDIETTGFDPFNDKIIEIGAVKMRGREVIGE-FSEFVNPEI-PIPQKITELTTITDE 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + ++ F +F +AHNAKFDVGFI + + +IDTL Sbjct: 483 MVANAEKIETVLPRFLEFC--TGTTVVAHNAKFDVGFIKQKTIDQGLEYSPS--VIDTLP 538 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P R L +L K +GIT+ + H A+ D+ ++V+ K + Sbjct: 539 LARTLLPELRGYGLANLVKYFGITLE--THHRAVDDAKATAEVFQKFL 584 >gi|331269632|ref|YP_004396124.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925] gi|329126182|gb|AEB76127.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum BKT015925] Length = 1443 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 9/165 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG S D+IIEIGAV++ + + + +F F+ P K +L IT++ Sbjct: 430 FVVFDLETTGFSSAYDKIIEIGAVKIKNGNIID-SFSTFVNPEI-KVPYNITELTSITND 487 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + SI +F +F ++ +AHNA FD+ FI +N D ++DT+ Sbjct: 488 DVKNADTIDSILPKFIEFCG--DSVLVAHNANFDMSFIRKNCNDLNIDI--NYTVMDTVP 543 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +A+ P R LN++ K G+++ + H A+ D+ D+ + Sbjct: 544 LAKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATGDILL 586 >gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens NCTC 8239] gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens NCTC 8239] Length = 1449 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D + +F F+ P + +L IT Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPK-VNIPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+ + +F +F ++ +AHNA FDVGFI L + K +P ++DT+ Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +AR +P + LN + K GI++ + H A+ D+ +++ Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENH--HRAVDDAKATAEIL 590 >gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens E str. JGS1987] gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens E str. JGS1987] Length = 1449 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D + +F F+ P + +L IT Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPK-VNIPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+ + +F +F ++ +AHNA FDVGFI L + K +P ++DT+ Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +AR +P + LN + K GI++ + H A+ D+ +++ Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENH--HRAVDDAKATAEIL 590 >gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis XB6B4] Length = 905 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 9/193 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ++IIEIGAV+ +++ + F F+ P +L I D+ Sbjct: 475 YVVFDLETTGFSPDKNKIIEIGAVK-VEHGEITERFSTFVNPE-VPIPYRIEELTSIRDD 532 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P +I +F +F +A +AHNA FD+ FI +R + IIDT++ Sbjct: 533 MVIDAPKIETILPQFMEFCG--DAIMVAHNADFDMSFIIKNCERQGIE--KEFTIIDTVA 588 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P R L+++ K G+++ + H A+ D+ +++++K + Sbjct: 589 LARILLPQLNRFKLDTVAKALGVSLENH--HRAVDDAGCTAEIFVKFVKMLHDRGMETLD 646 Query: 188 NEDRFFKEEKKTV 200 ++ + +T+ Sbjct: 647 QVNQMGQASPETI 659 >gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124] gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens B str. ATCC 3626] gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens ATCC 13124] gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens B str. ATCC 3626] Length = 1449 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D + +F F+ P + +L IT Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPK-VNIPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+ + +F +F ++ +AHNA FDVGFI L + K +P ++DT+ Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--DSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +AR +P + LN + K GI++ + H A+ D+ +++ Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENH--HRAVDDAKATAEIL 590 >gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 1438 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 61/199 (30%), Positives = 107/199 (53%), Gaps = 10/199 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL ++IIEI AV++ + + +R + F+ P+ R +L I D+ Sbjct: 421 YVVFDIETTGLSVTQNKIIEIAAVKMREGKEIDR-YATFVNPHER-IPYHIQQLTNINDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + F +F ++A +AHNA+FD F+NA+L+ + P+ + ++DTL Sbjct: 479 MVKDAPDVEPVLKRFVEF--AEDAILVAHNARFDYDFVNAKLKELGL-PIMENPVLDTLE 535 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P + LN+L +Y +++ + H A+ D+ L ++ ++ +I G+KT Sbjct: 536 LARMLFPTMKNHRLNTLAAKYKVSLENH--HRAIDDTVALGEILNGLLDDAVKIE-GYKT 592 Query: 188 NEDRFFKEEKKTVPNISLL 206 DR + K + N Sbjct: 593 L-DRLNDKVGKDLSNARPF 610 >gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13] gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13] Length = 1449 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 16/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + ++FDIETTGL+S + IIEIGAV++ +R + + P GR ++ Sbjct: 416 KIDDEEFVIFDIETTGLNSHTNEIIEIGAVKIKSGRIVDR-YSQLINP-GRPIPYHITEI 473 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 ITDE + ++P + + +F DF +A +AHNA FD+GFI ++++ + Sbjct: 474 TSITDEQVANEPKINEVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 530 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180 +IDTL +AR P + L L K G+ + H A+ DS ++++I + + Sbjct: 531 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588 Query: 181 -------INFGFKTN 188 IN GF+ N Sbjct: 589 GLEYMKDINIGFEVN 603 >gi|160940984|ref|ZP_02088323.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613] gi|158436074|gb|EDP13841.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613] Length = 1565 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 97/172 (56%), Gaps = 12/172 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG K ++IIEIGAV+++D T++ F F+ P+ + KL GI D Sbjct: 542 FVVFDIETTGFSPKKNKIIEIGAVKVVDGRITDK-FSTFVNPD-VPIPFDIEKLTGINDS 599 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P I +F +F +A +AHNA FDVGFI +++ P DP ++DT++ Sbjct: 600 MVLPYPKIDVILPQFLEFVG--DAVLVAHNASFDVGFIGHFAEKLEL-PFDP-TVLDTVA 655 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMV 176 IAR P+ R L+++ K I++ + H A+ D+ +++ ++KM+ Sbjct: 656 IARLLLPNLNRFKLDTVAKALNISLQNH--HRAVDDAGATAEIFAAFVKMLR 705 >gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101] gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens SM101] Length = 1449 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D + +F F+ P + +L IT Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPK-VNIPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+ + +F +F N+ +AHNA FDVGFI L + K +P ++DT+ Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--NSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +AR +P + LN + K GI++ + H A+ D+ +++ Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENH--HRAVDDAKATAEIL 590 >gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13] gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens CPE str. F4969] gi|24418366|sp|Q8XJR3|DPO3_CLOPE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13] gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens CPE str. F4969] Length = 1449 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG SKND+IIEIGAV+L D + +F F+ P + +L IT Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPK-VNIPYKITELTSITQN 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P+ + +F +F N+ +AHNA FDVGFI L + K +P ++DT+ Sbjct: 493 MVNGQPTIDEVLPKFMEFVG--NSVLVAHNAAFDVGFIKKNLMDMGKTLKNP--VMDTVP 548 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +AR +P + LN + K GI++ + H A+ D+ +++ Sbjct: 549 LARYLYPDLKKVKLNLVAKHLGISLENH--HRAVDDAKATAEIL 590 >gi|291536049|emb|CBL09161.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis M50/1] Length = 911 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 9/193 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ++IIEIGAV+++ + + F F+ P +L I D+ Sbjct: 481 YVVFDLETTGFSPDKNKIIEIGAVKVV-HGEITERFSTFVNPE-VPIPYRIEELTSIRDD 538 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P +I +F +F +A +AHNA FD+ FI +R + IIDT++ Sbjct: 539 MVIDAPKIETILPQFMEFCG--DAIMVAHNADFDMSFIIKNCERQGIE--KEFTIIDTVA 594 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P R L+++ K G+++ + H A+ D+ +++++K + Sbjct: 595 LARILLPQLNRFKLDTVAKALGVSLENH--HRAVDDAGCTAEIFVKFVKMLHDRGMETLD 652 Query: 188 NEDRFFKEEKKTV 200 ++ + +T+ Sbjct: 653 QVNQMGQASPETI 665 >gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella adiacens ATCC 49175] gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella adiacens ATCC 49175] Length = 1444 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 59/198 (29%), Positives = 102/198 (51%), Gaps = 11/198 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + ++ F+ F+ P G S ++ Sbjct: 420 ILLEDATYVVFDVETTGLSAIYDSIIELAAVKMKNGVVIDK-FEEFIDP-GHPLSATTIQ 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ ++ S + EF +F ++ +AHNA FD+GF+N + + + Sbjct: 478 LTGITDDMVRGSKSVEQVLKEFHEF--SKDCILVAHNASFDMGFLNTGYENVGIER-TEQ 534 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLS---DVYIKMMVG 177 +IDTL ++R HP + + LN+L KRY + + H A+ DS +++K Sbjct: 535 PVIDTLELSRMLHPQLKSHRLNTLAKRYNVALEQH--HRAVYDSETTGYLCHIFLKEAAN 592 Query: 178 GSQINFGFKTNEDRFFKE 195 Q+ + + N + +E Sbjct: 593 DHQLLYHDELNTNIHPEE 610 >gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1554 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 9/172 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFDIETTG K ++IIEIGAV+++D T+R F F+ P+ + KL GI Sbjct: 528 EDTFVVFDIETTGFSPKKNKIIEIGAVKVVDGKITDR-FSSFVNPD-VPIPFDIEKLTGI 585 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D + P I +F DF +A +AHNA FDVGFI+ + ++D Sbjct: 586 NDSMVLPYPKIDVILPQFLDFVG--DAVLVAHNASFDVGFISHFAEEQGLHF--NPTVLD 641 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 T++IAR P+ R L+++ K I++++ H A+ D+ ++++ + Sbjct: 642 TVTIARLLLPNLNRFKLDTVAKALNISLANH--HRAVDDAGATAEIFAAFVR 691 >gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus sp. HGF5] gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus sp. HGF5] Length = 1438 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 8/175 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I + +VFDIETTGL ++IIE+ AV++ + + R + F+ P+ R + Sbjct: 414 IELSSATYVVFDIETTGLSITANKIIELAAVKMHEGKEIGR-YATFVNPHER-IPYHIQQ 471 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L I D+ +KD P + EF +F + +AHNA+FD+GFI A L+ D L+ + Sbjct: 472 LTNINDDMVKDAPELEPVLKEFVEFVG--DGVLVAHNARFDMGFIQAALKNAGMDTLE-N 528 Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DTL +AR HP +N LN+L +Y + + S H A+ D+ L+ + ++ Sbjct: 529 PYLDTLELARLVHPGLKNHRLNTLADKYKVLLE--SHHRAIDDTIALAGILNGLL 581 >gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus lacrimalis 315-B] gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus lacrimalis 315-B] Length = 1415 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 98/168 (58%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL D+I EIGAV+++D T R F + P + +L IT+ Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITER-FSQLINPQ-MLIPEKVQELTRITNA 458 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++P+ + +F+DF +++ +AHNAKFD FI + + D ++P I+DTLS Sbjct: 459 LVENEPTIEEVAPKFYDFI--KDSVLVAHNAKFDTAFIRRVFKENDLDFINP--ILDTLS 514 Query: 129 IARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR + + +L +LCK++G+++ H A+ D+ + ++IK++ Sbjct: 515 FARATVKDTKKFNLATLCKKFGVSLVG--AHRAVNDAEATAHLFIKLI 560 >gi|325685948|gb|EGD28011.1| DNA polymerase III PolC [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 1402 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 8/175 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ S + Sbjct: 376 MKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTIN 433 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE ++ + + +F DF+ N HN +FDVGF+NA L+R P Sbjct: 434 LTSITDEMVQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVNAALKRCGY-PEISQ 490 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++R HP SR+ L+SLC++Y + + H H A D+ + K++ Sbjct: 491 PVVDTLEVSRLLHPEQSRHTLDSLCRKYNVALEHH--HRANQDAEATGYLMFKLL 543 >gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316] gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316] Length = 1490 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 9/163 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTGL D+IIEIGAV++LD ++ F F+ P SP KL ITD+ Sbjct: 460 VVFDIETTGLSPTEDKIIEIGAVKMLDGVVVDK-FSEFVDPKI-PISPATTKLTTITDDM 517 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P ++ +F +F + + HN FD+ FI +R+ IDT+ + Sbjct: 518 VIGAPLIDAVVPKFVEFCG--DCVLVGHNVGFDISFIIENCRRLGIKKEFTC--IDTMGL 573 Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R +P ++ L ++CK + H A+ D+ ++++ Sbjct: 574 SRAFYPQQAKHSLEAVCKTLKVVNEQH--HRAISDAECTAEIF 614 >gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 1415 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 98/168 (58%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL D+I EIGAV+++D T R F + P + +L IT+ Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITER-FSQLINPQ-MLIPEKVQELTRITNA 458 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++P+ + +F+DF +++ +AHNAKFD FI + + D ++P I+DTLS Sbjct: 459 LVENEPTIEEVAPKFYDFI--KDSVLVAHNAKFDTAFIRRVFKENDLDFINP--ILDTLS 514 Query: 129 IARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR + + +L +LCK++G+++ H A+ D+ + ++IK++ Sbjct: 515 FARATVKDTKKFNLATLCKKFGVSLVG--AHRAVNDAEATAHLFIKLI 560 >gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10] gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10] Length = 1438 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 8/175 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I + +VFDIETTGL ++IIE+ AV++ + + R + F+ P+ R + Sbjct: 414 IELSSATYVVFDIETTGLSITANKIIELAAVKMHEGKEIGR-YATFVNPHER-IPYHIQQ 471 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L I D+ +KD P + EF +F + +AHNA+FD+GFI A L+ D L+ + Sbjct: 472 LTNINDDMVKDAPELEPVLKEFVEFVG--DGVLVAHNARFDMGFIQAALKNAGMDTLE-N 528 Query: 122 RIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DTL +AR HP +N LN+L +Y + + S H A+ D+ L+ + ++ Sbjct: 529 PYLDTLELARLVHPGLKNHRLNTLADKYKVLLE--SHHRAIDDTIALAGILNGLL 581 >gi|307069564|ref|YP_003878041.1| putative DNA polymerase III subunit epsilon [Candidatus Zinderia insecticola CARI] gi|306482824|gb|ADM89695.1| putative DNA polymerase III, epsilon subunit [Candidatus Zinderia insecticola CARI] Length = 222 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 130/228 (57%), Gaps = 13/228 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 ++I+ DIETTGL+ K DRIIEI +++L+ TN+ F ++ PN RK++ +ALK+HGI+ Sbjct: 3 KEIILDIETTGLNVKKGDRIIEIACIKILNRKITNKKFHEYINPN-RKSNKDALKIHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--I 124 D+FLK+KP F I + +F +N I HN+ FD+ F+N E + + + Sbjct: 62 DKFLKNKPFFKDIIDKLINFI--KNYTIIIHNSSFDISFLNKEFKILKYKKFKYYVKNIV 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 D+L IAR+K P+ +NDLNSLCKR+ I+I R H ALLD LLS +Y+ ++ I + Sbjct: 120 DSLKIARKKFPNKKNDLNSLCKRFKISIKKRKLHNALLDCILLSKIYLILIRKQKNIFY- 178 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 +EKK +K + +I K+E H I+ + Sbjct: 179 ------NIINKEKKINNKNKKKLVNKMINIKINKDENKIHKDIIKNIN 220 >gi|307243534|ref|ZP_07525682.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus stomatis DSM 17678] gi|306493090|gb|EFM65095.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptostreptococcus stomatis DSM 17678] Length = 1202 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 9/171 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +VFDIETTG D I EIGAV L D +R F F+ P E +L IT Sbjct: 185 QRFVVFDIETTGFSVTGDNITEIGAVLLEDGQIKDR-FSTFVNPK-MDIPYEVQELTNIT 242 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++D P ++F DF +++ +AHNA FD GFI + + D +DT Sbjct: 243 NDMVEDAPGIEEALNKFMDF--AKDSILVAHNAYFDTGFIAQKCSEVGLDYKH--EKLDT 298 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 L +AR P R L+ L K I +S H A+ D+ + ++++ + Sbjct: 299 LLLARVLMPHMKRFGLDRLTKALSINLSGH--HRAVNDAEATAQLFLRFIA 347 >gi|299823038|ref|ZP_07054924.1| DNA polymerase III PolC [Listeria grayi DSM 20601] gi|299816567|gb|EFI83805.1| DNA polymerase III PolC [Listeria grayi DSM 20601] Length = 1470 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 57/182 (31%), Positives = 99/182 (54%), Gaps = 8/182 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I + +VFD+ETTGL + D IIE+ AV++ + + TF+ F+ P GR S + Sbjct: 447 IDLKEATYVVFDVETTGLSAVYDTIIELAAVKMENGQVVD-TFESFIDP-GRPLSATIIN 504 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ LK ++ F ++ +A +AHNA FD+GF+N + D + + Sbjct: 505 LTGITDDMLKGSDDIETVLKRFKEWCG--DAVLVAHNASFDMGFLNTAYSKAGIDKAE-N 561 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL +AR +P + LN+L K++ I + H A+ D+ + + K++ ++ Sbjct: 562 AVIDTLELARFLYPHFKNHRLNTLTKKFNIVLEQH--HRAVFDAEATAYLAWKLIKDANE 619 Query: 181 IN 182 ++ Sbjct: 620 MH 621 >gi|134098272|ref|YP_001103933.1| hypothetical protein SACE_1689 [Saccharopolyspora erythraea NRRL 2338] gi|133910895|emb|CAM01008.1| DNA polymerase III, epsilon subunit [Saccharopolyspora erythraea NRRL 2338] Length = 572 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 17/212 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + N++ +V D+ETTG + D + EIGAV++ FQ + P R P + Sbjct: 18 VPLNEVTFVVVDLETTGGSNAQDAVTEIGAVKVRGGEVVGE-FQTLVDPE-RDIPPSVVT 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + GIT+ ++D P S+ F +F + + +AHNA FD GF+ A +R+ P Sbjct: 76 ITGITEAMVRDAPRLDSVLPAFLEFC--RGSVLVAHNAPFDTGFLRAGCERLGLRWPKP- 132 Query: 122 RIIDTLSIARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +++ T+ +ARR + L +L G H AL D+ DV ++ Sbjct: 133 KVVCTVRLARRVLTRDETPNYRLGTLAGVLGARTE--PVHRALDDARATVDVLHALLERL 190 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 I G +T ED +P+++ L+R K Sbjct: 191 GPI--GVRTLEDLL-----GHLPDVTPLQRRK 215 >gi|313124033|ref|YP_004034292.1| DNA polymerase iii, alpha subunit (gram-positive type) (polc) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280596|gb|ADQ61315.1| DNA polymerase III, alpha subunit (Gram-positive type) (PolC) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 1445 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 8/175 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ S + Sbjct: 419 MKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE ++ + + +F DF+ N HN +FDVGF+NA L+R P Sbjct: 477 LTSITDEMVQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVNAALKRCGY-PEISQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++R HP SR+ L+SLC++Y + + H H A D+ + K++ Sbjct: 534 PVVDTLEVSRLLHPEQSRHTLDSLCRKYNVALEHH--HRANQDAEATGYLMFKLL 586 >gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_27] gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_27] Length = 1449 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 8/197 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ Sbjct: 416 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 473 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 IT+E + ++P + +F DF +A +AHNA FD+GFI ++++ + Sbjct: 474 TSITNEQVANEPKIDKVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 530 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR P + L L K G+ + H A+ DS ++++I + + Sbjct: 531 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588 Query: 182 NFGFKTNEDRFFKEEKK 198 + + + F+ + Sbjct: 589 GLEYMKDINTGFEVNVR 605 >gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 1_1_41FAA] gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 1_1_41FAA] Length = 1449 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 16/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++ +VFDIETTGL+S ++IIEIGAV++ +R + + P G ++ Sbjct: 416 KIDEEEFVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDR-YSQLINP-GISIPYHITEI 473 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 IT+E + ++P + +F +F +A +AHNA FD+GFI +++ L+ Sbjct: 474 TSITNEQVANQPKIDEVIGKFVEFIG--DAVLVAHNAPFDMGFIKRDIKEYLNIDLE-CS 530 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180 +IDTL +AR P + L L K G+ + H A+ DS ++++I + + Sbjct: 531 VIDTLQMARDLFPDFKKYGLGDLNKALGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588 Query: 181 -------INFGFKTN 188 IN GF+ N Sbjct: 589 GIEYLKDINKGFEVN 603 >gi|146297347|ref|YP_001181118.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410923|gb|ABP67927.1| DNA polymerase III catalytic subunit, PolC type [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 1402 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG D++ DRIIEIGAV++ + +R F F+ P G K +L GI Sbjct: 390 FVVVDIETTGFDNQKDRIIEIGAVKIENGEIVDR-FSTFVDPEG-KIPIRISELTGIYQN 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P S EF F + A +AHNA+FD+GF+ Q + IDTL Sbjct: 448 MVDNAPKLSDAILEFEKFCS--GAILVAHNAQFDIGFLKRSYQECGL--IFDYTYIDTLE 503 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++RR S + LN + + I + H H A D+ + ++I ++ + Sbjct: 504 LSRRVLTDLSSHKLNKVAEFLNIELKHH--HRADSDAETTAKIFISLIEKLKSRGY 557 >gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus coleocola ACS-139-V-Col8] gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus coleocola ACS-139-V-Col8] Length = 1435 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 66/215 (30%), Positives = 110/215 (51%), Gaps = 9/215 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I + +VFD+ETTGL S D+IIE+ AV++ + + TF+ F+ PN + S + Sbjct: 413 IALKEATYVVFDVETTGLSSVYDKIIELAAVKMKEGQVID-TFEAFINPN-QPLSSFTTE 470 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT+ ++D P + +F+DF QN +AHNA FD+GF+N +RI + P Sbjct: 471 LTGITNAMVEDAPQEDVVLKDFYDF--SQNTILVAHNASFDIGFLNKGYERIGIEN-TPL 527 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL ++R +P + + LN+L KRYG+ + H A+ DS + K++ + Sbjct: 528 PVIDTLELSRMVNPHLKSHRLNTLAKRYGVNLEQH--HRAVYDSETTGYLMYKLL-DQAL 584 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 +FG + + + + + L Sbjct: 585 ADFGMEYHHQLNNQLGQGDAFKQARPMHATLLVKE 619 >gi|288556947|ref|YP_003428882.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4] gi|288548107|gb|ADC51990.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4] Length = 1432 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 97/176 (55%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + IIE+ AV++ + +R F+ F P+ + ++L GITD+ Sbjct: 418 YVVFDVETTGLSAVYNTIIELAAVKIKNGEIIDR-FESFADPH-EPLTNTIIELTGITDD 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K +P + +F +F A +AHNA FD+GF+N Q+I + +IDTL Sbjct: 476 MVKGQPEVGEVLKDFHEFVGT--ATLVAHNASFDMGFLNVGYQKIGLGDA-TNPVIDTLE 532 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + R +P +N LN+LCK++ I + S H A+ D+ + KM+ ++ N Sbjct: 533 LGRFLYPELKNHRLNTLCKKFDIELV--SHHRAIYDAEATGYLLWKMVRDANERNV 586 >gi|331082627|ref|ZP_08331750.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] gi|330400246|gb|EGG79888.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] Length = 1487 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + D+IIEIGAV++ + T R F F+ P +L I D Sbjct: 463 YVVFDIETTGFSALKDKIIEIGAVKVENGRITER-FSEFVNPQI-PIPFRIEELTSINDN 520 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ I +F F + +AHNA+FD+ FI + I + D ++DT+ Sbjct: 521 MVADAPTIDVILPKFEKFC--EGCVMVAHNAEFDMSFIRKNYEDIGIEREDT--VVDTVG 576 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +AR P R L+++ K G+++ H H A+ D+ +D+++K + ++ + Sbjct: 577 MARFLLPQLNRFKLDTVAKAVGVSLEHH--HRAVDDASCTADIFVKFIEMCAERDI 630 >gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus harei ACS-146-V-Sch2b] Length = 1012 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 58/167 (34%), Positives = 98/167 (58%), Gaps = 9/167 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFDIETTGL S+ND+I EIGAV++ + +R F + P ++ + L GI++ + Sbjct: 2 VFDIETTGLSSRNDKITEIGAVKIKNGMIVDR-FSQLINPE-KEIPQVVVDLTGISNAMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 +++P+ + +F+DF ++A +AHNAKFD+ FI E N + + I+DTL +A Sbjct: 60 ENEPTIEEVILKFYDF--AKDAVLVAHNAKFDISFIRREYA--NNNLVFNHPILDTLVLA 115 Query: 131 RRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 R R +L +LCK G+++ H A+ D+ ++V+IK++ Sbjct: 116 RATMSDMKRFNLGTLCKNLGVSLVG--AHRAVNDAEATAEVFIKLIE 160 >gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2] gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2] Length = 1437 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 15/235 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTGL N++IIE+ V++ + + +R F F+ P+ K +L I DE Sbjct: 421 YIVFDIETTGLSIINNKIIELAGVKMREGKEVDR-FSTFINPH-EKIPYHIQQLTNINDE 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P EF DF ++ +AHNA+FD+GFI A L+ I P + ++DTL Sbjct: 479 MVKDAPELEPKLREFIDFIG--DSILVAHNARFDIGFIQANLKSIGM-PDVTNPVLDTLE 535 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-GFK 186 +AR HP + LN+L +Y +++ + H A+ DS L V ++ ++ N G Sbjct: 536 LARFLHPTMKNHRLNTLSAKYKVSLDNH--HRAVDDSVALGGVLFGLINDAAERNITGLH 593 Query: 187 TNEDRFFKEEKKTVP---NISLLKRD--KPLFTRITKEELDEHDKTIQTLGKNAI 236 D + + P NI L K LF ++ EH K + + K+ + Sbjct: 594 QLNDYVGLDISNSRPFHCNIYALNAAGKKNLFKMVSISH-TEHFKRVACIPKSKL 647 >gi|167746785|ref|ZP_02418912.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662] gi|167653745|gb|EDR97874.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662] Length = 1475 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG +S+ DRIIEIGAV+++D T TF F+ P + +L ITDE Sbjct: 449 FVVFDIETTGFNSQTDRIIEIGAVKVIDGEIT-ETFSEFINPQI-PIPFKITQLTTITDE 506 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + ++ F +F ++ +AHNA FD GFI+ +R++ D I+DTL Sbjct: 507 MVMNADTIDAVLPRFLEFCG--DSVLVAHNAGFDTGFIHENAKRLDLDFHPT--IVDTLG 562 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R ++ L++LCK I + + H A+ D+ ++IK + Sbjct: 563 LSRSLMTHLAKFTLDNLCKNLNIKLE--THHRAVDDATATGKIFIKFV 608 >gi|315111548|ref|YP_813210.2| DNA polymerase III, alpha subunit ( type) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1445 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 8/175 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ S + Sbjct: 419 MKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE ++ + + +F DF+ N HN +FDVGF++A L+R P Sbjct: 477 LTSITDEMVQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++R HP SR+ L+SLC++Y + + H H A D+ + K++ Sbjct: 534 PVVDTLEVSRLLHPEQSRHTLDSLCRKYNVALEHH--HRANQDAEATGYLMFKLL 586 >gi|146341316|ref|YP_001206364.1| DNA-directed DNA polymerase [Bradyrhizobium sp. ORS278] gi|146194122|emb|CAL78141.1| hypothetical protein; putative DNA-directed DNA polymerase [Bradyrhizobium sp. ORS278] Length = 737 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 9/164 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG S DRI EIGAV++ ++ + + + P R + ++L GIT++ Sbjct: 563 YVVVDIETTGSWSSGDRITEIGAVKVRNHQLVEQ-WHSLINPQ-RPIPAKIVELTGITNQ 620 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F I F F + ++AHN FD GF+++E +R+ + P + T Sbjct: 621 MVRDAPVFHEIADSFMAFMG--DGIFVAHNVNFDYGFLSSEFERLERRFRFP--KLCTCV 676 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 RR++P L LC YGI + H AL D+ + + Sbjct: 677 GMRRRYPGHTSYGLGKLCAIYGIELDDH--HRALCDARAAAHLL 718 >gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM 574] gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM 574] Length = 1421 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 19/201 (9%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + +V D ETTG + D IIEIGAV+ ++ + +R F + P+ ++ E KL Sbjct: 403 KLTDLTYVVLDFETTGFSPQTDEIIEIGAVKFINGMEVDR-FGTLVKPD-KEIPFEVSKL 460 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + +KD P + +F +A +AHNA FD+ F+ ++ + + ++ Sbjct: 461 TGITLDMVKDAPDARQALAALREFIG--DAVLVAHNAAFDLSFLKVGFRKYLQVEV-TNQ 517 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG--- 178 ++DTL AR P + + L++L K + I +++ H A+ D+ ++ ++ Sbjct: 518 VVDTLGTARVLLPHLKNHKLDTLVKEFKIELANH--HRAVDDAAATGKLWQVLLTKAVEQ 575 Query: 179 --------SQINFGFKTNEDR 191 SQ+ G T++ R Sbjct: 576 GAQDLAALSQLGQGVSTDKLR 596 >gi|240142703|ref|YP_002967216.1| Protein with DNA-directed DNA polymerase-like domain [Methylobacterium extorquens AM1] gi|240012650|gb|ACS43875.1| Protein with DNA-directed DNA polymerase-like domain [Methylobacterium extorquens AM1] Length = 754 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 9/169 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTGL N DR+IE+GAVE++D R FQ P G S + GI+ Sbjct: 543 RFVVIDFETTGLSPNNGDRVIEVGAVEIVDGR-IGRRFQSLANP-GFPVSARITAITGIS 600 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L D P + + E F + A +AHNA FD F+ AE++R+ D ++ T Sbjct: 601 NAMLVDAPPLAEVIREVSAFI--EGATLVAHNAGFDRRFLQAEMERLGL--WDDREMLCT 656 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + +R +P L L + G+ + + H AL D+ +++++ M Sbjct: 657 MRLGKRAYPGLGSYKLAFLAEHAGVALPD-AMHRALADAMATAELFLVM 704 >gi|116515093|ref|YP_802722.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256947|gb|ABJ90629.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 231 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 81/241 (33%), Positives = 129/241 (53%), Gaps = 18/241 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 MI+KN +R++ DIETTG++ +IIEIG +E ++ T R +L P R Sbjct: 1 MIKKN-LRQVFLDIETTGMNKYGCIYLNHKIIEIGIIETINRKYTGRYIHYYLYPQ-RSI 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA--ELQRI 113 A K+HGI++ FL +KP+F I+ E ++F +N+E I HN+ FD+ F++ L I Sbjct: 59 ESSAYKIHGISESFLSNKPTFKDIYKEIFNFI--KNSEIIVHNSNFDISFLDYEFFLLNI 116 Query: 114 NKDPLDPSRII-DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + I DTL IAR+ P +N+L++LC RY IT +R+ H ALLD+ +L +Y+ Sbjct: 117 GINKIKTFSTITDTLFIARKLFPGKKNNLDALCARYKITNINRNFHSALLDAKILMKLYM 176 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG 232 M +INF R + ++ K N + TK+E H + ++ + Sbjct: 177 YMTSIQKEINF------SRNYIKKIKIPKNFFKYYKKPLKIIFATKKENQTHLEYMKKII 230 Query: 233 K 233 K Sbjct: 231 K 231 >gi|116093619|gb|ABJ58772.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1411 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 8/175 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ ++FD+ETTGL S D IIEIGAV++ + +R F F+ P+ S + Sbjct: 385 MKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPH-HPLSETTIN 442 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE ++ + + +F DF+ N HN +FDVGF++A L+R P Sbjct: 443 LTSITDEMVQAADDEAVVIKQFMDFYG--NDPLCGHNVQFDVGFVDAALKRCGY-PEISQ 499 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++R HP SR+ L+SLC++Y + + H H A D+ + K++ Sbjct: 500 PVVDTLEVSRLLHPEQSRHTLDSLCRKYNVALEHH--HRANQDAEATGYLMFKLL 552 >gi|319779077|ref|YP_004129990.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] gi|317109101|gb|ADU91847.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] Length = 239 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 85/237 (35%), Positives = 128/237 (54%), Gaps = 16/237 (6%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR+I D ETTGL K R+IE+G E++D T Q++ P R+ EALK+HGI Sbjct: 1 MRQICLDTETTGLSWKDGHRVIELGCCEIIDGLLTGNNLQIYFNPE-REVDEEALKVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSR 122 ++EFL DKP FS + ++ ++A+ + HNA+FD+GF+N EL K L+ + Sbjct: 60 SNEFLSDKPLFSDKADKIIEYL--KDAQLVIHNAEFDMGFLNYELSLCGKPKLETFIHNP 117 Query: 123 IIDTLSIARRK-HPSSRNDLNSLCK-----RYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +IDT +AR S+ LN L K Y + R HGALLD+ +L+ V+IK+ Sbjct: 118 VIDTRELARENGFSSAVITLNKLYKDLVDESYK-QNTDRELHGALLDAVMLAKVFIKLNS 176 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 G ++I F + + + NI L K + L + ++EE+ H+ I TL K Sbjct: 177 GQNEI-FLETSARSEASDDLGFSSQNIDLSKLNLKLI-KASEEEIAAHNDYIATLSK 231 >gi|15805882|ref|NP_294580.1| DNA polymerase III subunit epsilon [Deinococcus radiodurans R1] gi|6458571|gb|AAF10431.1|AE001939_8 DNA polymerase III, epsilon subunit, putative [Deinococcus radiodurans R1] Length = 197 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 92/175 (52%), Gaps = 12/175 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRK-----NSPEALKL 62 +VFD+ETTG + I+EIGAV ++ + + T F+ + P +A ++ Sbjct: 24 VVFDLETTGFSPASAAIVEIGAVRIV-GGQIDETLKFETLVRPTRPDGSLLSIPWQAQRV 82 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI+DE ++ P+ + +F+DF + + +AHN FD GF+ A +R+ P R Sbjct: 83 HGISDEMVRRAPAIKDVLPDFFDFVD--GSAVVAHNVSFDGGFMRAGAERLGLSWA-PER 139 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + T+ ++RR P R ++L L +R G+ + +H + D + + Y++++ Sbjct: 140 ELCTMQLSRRAFPRERTHNLTVLAERLGLEFAPGGRHRSYGDVQVTAQAYLRLLE 194 >gi|269123116|ref|YP_003305693.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM 12112] gi|268314442|gb|ACZ00816.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM 12112] Length = 1465 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG ND+IIEIGAV+L + +R F F+ P + ++L GI D Sbjct: 404 FVVFDIETTGFSPINDKIIEIGAVKLKNGKVLDR-FSEFVNPQT-IIPKKIVELTGINDN 461 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + F +F + +AHNAKFDVGFI+ + + +N + IDTL Sbjct: 462 MVKDSDIIDKVMPRFLEFV--KGTTLVAHNAKFDVGFISKKCEDLNLE--TDFSYIDTLE 517 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ R +L++L KR+ I + + H A+ D++ ++++ K++ Sbjct: 518 WSKILVDDVKRFNLDTLTKRFNIKLENH--HRAVDDANATAELFKKLL 563 >gi|148255092|ref|YP_001239677.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1] gi|146407265|gb|ABQ35771.1| hypothetical protein BBta_3691 [Bradyrhizobium sp. BTAi1] Length = 720 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG S DRI EIGAV++ ++ + + P R + ++L GIT++ Sbjct: 546 YVVVDIETTGSWSSGDRITEIGAVKVRNHQIV-EEWHSLINPQ-RPIPAKIVELTGITNQ 603 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F I F F + ++AHN FD GF++ E +R+ + P + T Sbjct: 604 MVRDAPFFHDIADSFIAFMG--DGIFVAHNVNFDYGFLSYEYERLERRFRFP--KLCTCV 659 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 RR++P + L LC YGI + H AL D+ + + + Sbjct: 660 GMRRRYPGHKSYGLGKLCAIYGIALDDH--HRALCDARAAARLLHLI 704 >gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 1401G] gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 1401G] Length = 1424 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + Sbjct: 458 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + N G + +F + K+ PN Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598 >gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 2503V10-D] gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 2503V10-D] Length = 1424 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + Sbjct: 458 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + N G + +F + K+ PN Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598 >gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 1421 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 98/168 (58%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + D I EIGAV+++D +R F + P K ++L GI+++ Sbjct: 406 FVVFDIETTGFSPQVDEITEIGAVKIVDGVIVDR-FSQLVNP-MIKIPDRVVELTGISND 463 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 F+KD+P+ + +F DF +N+ +AHNA FD+ FI ++ + N ++DTLS Sbjct: 464 FVKDEPTIDKVIVDFNDFC--KNSVLVAHNAGFDISFIRRDMLKYNLSF--NFTVLDTLS 519 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR R +L +L K+ G+++ + H A+ D+ ++V+IKM+ Sbjct: 520 LARAIIKDIKRFNLTALSKKLGVSLVN--AHRAVNDAEATAEVFIKML 565 >gi|325282490|ref|YP_004255031.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP] gi|324314299|gb|ADY25414.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP] Length = 185 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 10/174 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCP-----NGRKNSPEALKLH 63 +VFD+ETTGL + D I+EIGA+ + D T +Q + P A ++H Sbjct: 12 VVFDLETTGLSPERDGIVEIGALRIRDGRVVTEDPYQTLVRPQNSLGESVTIPWRAERIH 71 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++E + PS + + EF ++ +A +AHN FD GF+ A + P R Sbjct: 72 GISNEMVVAAPSIAQVLPEFLEWAG--DAPLVAHNIGFDSGFMRAAARHCGLRWA-PQRE 128 Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 I T+ ++RR P R++L+SL R G++ S + +H +L D + + Y++++ Sbjct: 129 ICTVQLSRRAFPRERRHNLDSLAGRLGLSFSPQGRHRSLGDVEVTAAAYLRLLE 182 >gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 03V1-b] gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 03V1-b] Length = 1424 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE +++ + + +F DF+ Q+ HN +FD+GF+NA L+R N D + Sbjct: 458 LTSITDEMVQNADDENIVIRQFQDFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + N G + +F + K+ PN Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598 >gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335] gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners AB-1] gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335] Length = 1420 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + Sbjct: 396 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 453 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + Sbjct: 454 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 510 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 511 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 568 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + N G + +F + K+ PN Sbjct: 569 RFQEANLGKMNDYAKFGQVYKRAKPN 594 >gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195] gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195] Length = 1424 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + Sbjct: 458 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + N G + +F + K+ PN Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598 >gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2052A-d] gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2052A-d] Length = 1420 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + Sbjct: 396 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 453 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + Sbjct: 454 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 510 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 511 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 568 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + N G + +F + K+ PN Sbjct: 569 RFQEANLGKMNDYAKFGQVYKRAKPN 594 >gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2053A-b] gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2053A-b] Length = 1424 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + Sbjct: 458 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + N G + +F + K+ PN Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598 >gi|240146857|ref|ZP_04745458.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] gi|257200990|gb|EEU99274.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] Length = 697 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 9/193 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ++IIEIGAV+++ + + F F+ P +L I D+ Sbjct: 475 YVVFDLETTGFSPDKNKIIEIGAVKVV-HGEITERFSTFVNPE-VPIPYRIEELTSIRDD 532 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P +I +F +F +A +AHNA FD+ FI +R + IIDT++ Sbjct: 533 MVIDAPKIETILPQFMEFCG--DAIMVAHNADFDMSFIIKNCERQGIE--KEFTIIDTVA 588 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P R L+++ K G+++ + H A+ D+ +++++K + Sbjct: 589 LARILLPQLNRFKLDTVAKALGVSLENH--HRAVDDAGCTAEIFVKFVKMLHDRGMETLD 646 Query: 188 NEDRFFKEEKKTV 200 ++ + +T+ Sbjct: 647 QVNQMGQASPETI 659 >gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 3008A-a] gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2062A-h1] gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2062A-h1] gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 3008A-a] Length = 1420 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + Sbjct: 396 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 453 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + Sbjct: 454 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 510 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 511 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 568 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + N G + +F + K+ PN Sbjct: 569 RFQEANLGKMNDYAKFGQVYKRAKPN 594 >gi|254302688|ref|ZP_04970046.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322880|gb|EDK88130.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 1454 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 16/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++ +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ Sbjct: 421 KIDEEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDR-YSQLINP-GRPIPYHITEI 478 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 ITDE + ++P + +F DF +A +AHNA FD+GFI ++++ + S Sbjct: 479 TSITDEQVANEPKIDEVIGKFIDFVG--DAVLVAHNAPFDMGFIKRDVKKY-LNIDLQSS 535 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180 +IDTL +AR P + L L K G+ + H A+ DS ++++I + + Sbjct: 536 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLDKYKEK 593 Query: 181 -------INFGFKTN 188 IN GF+ N Sbjct: 594 GLEYIKDINVGFEVN 608 >gi|258511479|ref|YP_003184913.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478205|gb|ACV58524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 240 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 96/237 (40%), Gaps = 15/237 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R + R +V D ETTGL + R++E+ VE+ + + + P G PEA Sbjct: 1 MRLQEARFVVVDTETTGLPPEG-RVVELALVEVGLECEPQIVYSALVDP-GCPIPPEASA 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H ITD + KP S ++ + + +A +AHNA+FD G + P Sbjct: 59 VHHITDRDVAGKPRLSQVWPKVLGYIG--DAILVAHNAEFDRGML----------PETGR 106 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I + +A+ ++ L GI + H AL D+ + + V+ + + + Sbjct: 107 PWICSKRLAQHLWRDAPKHSNQVLRYWLGIDVEVGQPHRALGDAIVTAHVFQRELRAYLE 166 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + +E F E V + K + + LD + +Q L + W Sbjct: 167 AGYPDDVDELIAFAESPIEVQTMPFGKHKGMPLKEVPLDYLDWALRNLQDLSPDLRW 223 >gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 143-D] gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 143-D] Length = 1416 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + Sbjct: 392 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 449 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + Sbjct: 450 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 506 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 507 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 564 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + N G + +F + K+ PN Sbjct: 565 RFQEANLGKMNDYAKFGQVYKRAKPN 590 >gi|260589219|ref|ZP_05855132.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] gi|260540300|gb|EEX20869.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] Length = 1487 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + D+IIEIGAV++ + T R F F+ P +L I D Sbjct: 463 YVVFDIETTGFSALKDKIIEIGAVKVENGRITER-FSEFVNPQI-PIPFRIEELTSINDN 520 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ I +F F + +AHNA+FD+ FI + I + D ++DT+ Sbjct: 521 MVADAPTIDVILPKFEKFC--EGCVMVAHNAEFDMSFIRKNYEDIGIEREDT--VVDTVG 576 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +AR P R L+++ K G+++ H H A+ D+ +D+++K + Sbjct: 577 MARFLLPQLNRFKLDTVAKAVGVSLEHH--HRAVDDASCTADIFVKFIE 623 >gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174] gi|149832830|gb|EDM87913.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174] Length = 1439 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 10/186 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFDIETTG +IIEIGAV + + T+R F F+ P +L I D Sbjct: 412 KFVVFDIETTGFSPLTCQIIEIGAVRVENGVITDR-FSTFVNPK-VPIPYRIEQLTSIND 469 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P +I +F +F A +AHNA FD+ FI +R +DT+ Sbjct: 470 SMVMDAPDIQTILPQFLEFCA--GAVMVAHNADFDMSFIIENCKRQGLP--QEYTYVDTV 525 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FGF 185 +AR P+ R L+++ K G+++ H H A+ D+ ++++++ + + + F Sbjct: 526 GMARFLLPALNRFKLDTVAKAVGVSLDHH--HRAVDDAACTAEIFVRFVEMLKERDIFDM 583 Query: 186 KTNEDR 191 T + Sbjct: 584 DTLNQQ 589 >gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 60-B] gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 60-B] Length = 1424 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + Sbjct: 458 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + N G + +F + K+ PN Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598 >gi|319937397|ref|ZP_08011804.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1] gi|319807763|gb|EFW04356.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1] Length = 1438 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 6/180 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I + I FD+ETTGL +D I E GAV++ + + R Q + PN R S + Sbjct: 390 ISLKDLTFISFDLETTGLSVMDDDITEFGAVKIKNGQEIGR-LQSLIKPNKR-ISQKITN 447 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L IT+E +KD P+ + +FF + +AHNA FDVGF+N LQR + L + Sbjct: 448 LTHITNEDVKDAPTIQEYIPKILEFFGDD--VIVAHNATFDVGFLNEILQRHGYEKL-KN 504 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ID+L++A + P + L ++ + Y I H A D+ +L+ V+ M+ Q Sbjct: 505 PAIDSLALAWKLLPQLKGFRLGNVARYYRIAYDGDDAHRADYDAEVLAGVFNMMLHDMMQ 564 >gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] Length = 684 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 9/177 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +V D ETTGL DR+IE+ V + + + TFQ + P R+ P ++ Sbjct: 96 LEEVEFVVVDTETTGLRPGPDRVIEVAGVRMRNG-EILDTFQSLVHPE-RRIPPFIVRFT 153 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+ E L D P I +F F + A + HN FDV F+ E Q + P Sbjct: 154 GISPEMLADAPKARDIMPDFLRFI--EGATLVGHNLSFDVNFLTHEAQLLGLPF--PVEG 209 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ ++RR P R L+ + + I +R H AL D+ + +DV+ +++ Sbjct: 210 LDTILLSRRLLPGLKRFKLDMVAQYLQIQTHNR--HRALGDAQVTADVFARLLERAK 264 >gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599] gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599] Length = 1434 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL++ IIEI AV++ ++ + + P + P+ ++ GIT+E Sbjct: 421 YVVFDTETTGLNASEHTIIEIAAVKMKGAEIIDQ-WTELIDPQLQ-IGPKTTEITGITNE 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ + + + +F DF +A +AHNA+FD FINA +RI +P + +DTL Sbjct: 479 MLRGQETLDVVLRKFKDF--TGDAILVAHNAEFDKAFINACAKRIGMEPW-TNPFLDTLP 535 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR + RN L SL K++ + + + H AL D+ L+ V+ +M+ Sbjct: 536 LARLMYKGMRNYRLGSLAKKFNVELIN--AHRALDDTVALAHVFQQML 581 >gi|218291538|ref|ZP_03495419.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius LAA1] gi|218238658|gb|EED05882.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius LAA1] Length = 240 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 15/245 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ + R +V D ETTGL + R++E+ VE+ + + + P G PEA Sbjct: 1 MKLSDARFVVVDTETTGLPPEG-RVVELALVEVGLEREPQIVYSALVDP-GCPIPPEASA 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H ITD + KP S ++ + + +A +AHNA+FD G + P Sbjct: 59 VHHITDRDVAGKPRMSQVWPKVLGYIG--DAVLVAHNAEFDRGML----------PETGR 106 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + + + P ++ L GI + H AL D+ + + V+ + + + Sbjct: 107 PWLCSKRLVQHLWPDAPKHANQVLRYWLGIDVEVGQPHRALGDALVTAHVFQRELRAYLE 166 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRY 240 + +E F E V + K + + LD + +Q L + W Sbjct: 167 AGYPDDVDELTAFAESPIEVQTMPFGKHKGMPLKEVPLDYLDWALRNLQDLSPDLRWSMQ 226 Query: 241 ISSNQ 245 + Q Sbjct: 227 QALEQ 231 >gi|257066105|ref|YP_003152361.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548] gi|256797985|gb|ACV28640.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548] Length = 1365 Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL DRI EIGA ++ K + + P + +++ GIT+E Sbjct: 349 FVVFDLETTGLSRYKDRITEIGACR-VEGGKITEIYNELVNPE-MVIPEKIIEITGITNE 406 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+ + F DF +++ + N FDVGF+ R+ D +DTL Sbjct: 407 MVKDCPTIEEVLPGFLDFC--KDSILVGQNTDFDVGFVRENCHRMGLDF--NPIYLDTLP 462 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR + L+ + ++ I + H A D+ + ++IKM Sbjct: 463 MARALFSDMKKFSLDKIARKLEIPAFNH--HRASDDARATAQIFIKM 507 >gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing bacterium SS3/4] Length = 1376 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG ++IIEIGAV++ + +R F+ P + +L GI D Sbjct: 415 YVVFDIETTGFSPIKNKIIEIGAVKVRNGEIIDR-MDEFVNPE-VPIPFDIERLTGINDA 472 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + F +F +A +AHNA FDV FI+ + ++DT++ Sbjct: 473 MVMGADTVDKVLPRFLEFVG--DAALVAHNASFDVSFISHNAGLLGLSFDPT--VLDTVT 528 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +AR P+ R L+++ K G+++ + H A+ D+ + +++K + Sbjct: 529 LARALLPNLNRFKLDTVAKALGVSLENH--HRAVDDAEATAGIFLKFVE 575 >gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 01V1-a] gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 01V1-a] Length = 946 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + Sbjct: 458 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + N G + +F + K+ PN Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598 >gi|325479569|gb|EGC82665.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus prevotii ACS-065-V-Col13] Length = 1369 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 23/208 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL DRI EIGAV++ + T + + P S + + GIT+E Sbjct: 353 FVVFDLETTGLSKYKDRITEIGAVKVENGKIT-EEYNQLVNPE-MVISEKITDITGITNE 410 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P + +F F ++ + N FDVGFI R+ + +DTL Sbjct: 411 MVEDCPKIDEVMKDFLKFCG--DSILVGQNTDFDVGFIKENCFRMEIEF--NPLYLDTLP 466 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR + L+ + ++ I + H A D+ + ++IKM Sbjct: 467 MARALFSDMKKFSLDKIARKLEIPAFNH--HRASDDARATAQIFIKMF------------ 512 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215 DR K ++ NI+ LK +P Sbjct: 513 --DRIMKMNGISLSNINKLKSYRPKAKH 538 >gi|124002035|ref|ZP_01686889.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134] gi|123992501|gb|EAY31846.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134] Length = 463 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL +D+I EI + D +F + P S ++ GIT++ Sbjct: 2 YTIIDVETTGLRPTDDKITEIAIYKH-DGESVVDSFHSLVNPECY-ISDRITQITGITND 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P F I + + ++AHNA FD GF+ E + + + + T+ Sbjct: 60 MVANAPKFYEIAKDILAI--TEGTVFVAHNAHFDYGFVREEFKALGYKF--TRKTLCTVR 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++R+ P L LCK + I +++ H A D+ +V+ K++ Sbjct: 116 VSRKVFPGLPSYSLAKLCKHFKIQLTNH--HRASADALATVEVFEKLLE 162 >gi|160934103|ref|ZP_02081490.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753] gi|156866776|gb|EDO60148.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753] Length = 1451 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTGL + NDRI EIGAV + + T+ F F+ P R + +L GI D Sbjct: 434 YISFDLETTGLSAANDRITEIGAVRIHNGEITD-VFNTFVNPE-RPIPAKITELTGINDS 491 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P F +F ++ +AHNA FD FI A R N D + +DT+ Sbjct: 492 MVIDAPKEKEAVEAFLEFCGKEP-VLLAHNAPFDTSFIQAVAARHNLDF--SNTYLDTVP 548 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R P + L+++ K ++ + H A D+ +L+++++ ++ Sbjct: 549 MCRAMLPGIKNHKLDTVAKHLK--LAPFNHHRASDDAMVLANIFLVLL 594 >gi|85706434|ref|ZP_01037528.1| putative exonuclease [Roseovarius sp. 217] gi|85669207|gb|EAQ24074.1| putative exonuclease [Roseovarius sp. 217] Length = 688 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 102/199 (51%), Gaps = 10/199 (5%) Query: 4 KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61 + + +VFD ETTGL + D I++I + +++ F + + P GR P + + Sbjct: 489 LSDLSFVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGECFDMLVNP-GRAIPPASTR 547 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H I+DE ++ P F DF Q A +AHNA FD+ F+ + + I + +P Sbjct: 548 VHHISDEMVQGAPGIVEAGRRFHDFC--QGAVLVAHNAPFDLAFLRLKEKVIGRRFDNP- 604 Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ T+ ++ S ++ L++LC R+GITI ++H A+ D+ ++V+++M+ G Sbjct: 605 -VLCTVLMSAGLFDHSGQHTLDALCDRFGITIPPEARHTAMGDTVATAEVFVRML--GLL 661 Query: 181 INFGFKTNEDRFFKEEKKT 199 G T +E + T Sbjct: 662 QAKGVTTLGGAIAEEGRMT 680 >gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus TM300] gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus carnosus subsp. carnosus TM300] Length = 1437 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 109/204 (53%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ R S L I+D+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVHDGEIIDK-FERFSNPHER-LSDTIKNLTHISDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF ++ +A ++AHNA FD+GFI+ +R + +IDTL Sbjct: 480 MLVDAPEIDDVLTEFKEWVG--DAIFVAHNASFDMGFIDTGYERAGLGN-YTNGVIDTLE 536 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ ++ Sbjct: 537 LSRTINTEFGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMLKQVEELGV---- 590 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 K+ +++ N KR +P Sbjct: 591 ---TNHKDINQSLSNEDAYKRARP 611 >gi|118443832|ref|YP_878213.1| DNA polymerase III PolC [Clostridium novyi NT] gi|118134288|gb|ABK61332.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium novyi NT] Length = 1444 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 91/176 (51%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG S+ D+IIE GAV++ + + + +F F+ P K + +L IT++ Sbjct: 431 FVVFDLETTGFSSQYDKIIEFGAVKIKNGNIID-SFSAFVNPEI-KIPYKITELTSITND 488 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + + +F F + +AHN+ FD+ FI + +N + ++DT+ Sbjct: 489 DVKDAETIDKVLPKFIKF--AEGTVLVAHNSNFDMSFIRKNCKDLNIE--CNYTVMDTIP 544 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +A+ P R LN++ K G+++ + H A+ D+ D+ + ++N Sbjct: 545 LAKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATGDILVHCFKLLKEMNI 598 >gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31] gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31] Length = 1449 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 16/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++ +VFDIETTGL+S ++IIEIGAV++ +R + + P G ++ Sbjct: 416 KIDEEEFVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDR-YSQLINP-GISIPYHITEI 473 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 IT+E + ++P + +F DF +A +AHNA FD+GFI +++ L+ + Sbjct: 474 TSITNEQVANQPKIDEVIGKFVDFIG--DAVLVAHNAPFDMGFIKRDIKEYLNIDLE-NS 530 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180 +IDTL +AR P + L L K G+ + H A+ DS ++++I + + Sbjct: 531 VIDTLQMARDLFPDFKKYGLGDLNKSLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588 Query: 181 -------INFGFKTN 188 IN GF+ N Sbjct: 589 GIEYLKDINKGFEVN 603 >gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM 15981] gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM 15981] Length = 1561 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 17/195 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + +RIIEIGAV++ D T++ F F+ P+ + KL I D Sbjct: 538 YVVFDIETTGFSPEKNRIIEIGAVKVTDGKITDK-FSTFVNPD-VPIPFDIEKLTSINDA 595 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P I +F +F +A +AHNA FDVGFI ++ ++DT++ Sbjct: 596 MVLPYPKIDVILPQFLEFVG--DAALVAHNASFDVGFIGHYAEKQGLAF--NPTVLDTVT 651 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVG-----GS 179 +AR P+ R L+++ K I++++ H A+ D+ +++ ++KM+ Sbjct: 652 MARLLLPNLNRFKLDTVAKALNISLANH--HRAVDDAGCTAEIFAAFVKMLRDRDVETLD 709 Query: 180 QINFGFKTNEDRFFK 194 Q+N NED K Sbjct: 710 QLNSLNAMNEDTIRK 724 >gi|295094742|emb|CBK83833.1| DNA polymerase III catalytic subunit, PolC type [Coprococcus sp. ART55/1] Length = 1603 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL K+++IIEIGAV++ D + TF F+ P G + +L I D+ Sbjct: 547 YVVFDIETTGLSKKHNKIIEIGAVKVKDG-EVVDTFSEFINP-GVPIPYQIEQLTSINDD 604 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P F I F +F + +AHNA FD GF+ + + + ++DT++ Sbjct: 605 MVKDAPMFDVIVPRFVEFCGDD--IVVAHNASFDTGFVRMNAEELGLKF--DNTVLDTMT 660 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ P + L+ +CK + +H H A+ D+ + V+ K++ Sbjct: 661 LSHILLPELGKFTLDRVCKELKVVNAHH--HRAIDDAEATAKVFFKLL 706 >gi|258510511|ref|YP_003183945.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477237|gb|ACV57556.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 240 Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 15/237 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R + R +V D ETTGL + R++E+ VE+ + + + P G PEA Sbjct: 1 MRLQEARFVVVDTETTGLPPEG-RVVELALVEVGLEREPQIVYSALVDP-GCPIPPEASA 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H ITD + KP ++ + ++ +A +AHNA+FD G + P Sbjct: 59 VHHITDRDVAGKPRLFQVWPKVLEYIG--DAILVAHNAEFDRGML----------PETGR 106 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I + +A+ ++ L GI + H AL D+ + + V+ + + + Sbjct: 107 PWICSKRLAQHLWRDAPKHSNQVLRYWLGIDVEVGQPHRALGDAIVTAHVFQRELRAYLE 166 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + ++ F E V + K + + LD + +Q L + W Sbjct: 167 AGYPDDVDDLIAFAESPIEVQTMPFGKHKGMPLKDVPLDYLDWALRNLQDLSPDLRW 223 >gi|168187912|ref|ZP_02622547.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum C str. Eklund] gi|169294244|gb|EDS76377.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum C str. Eklund] Length = 1441 Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG S+ D+IIE GAV++ + + + +F F+ P K +L IT+E Sbjct: 428 FVVFDLETTGFSSQYDKIIEFGAVKIKNGNIID-SFSAFVNPE-MKIPYRITELTSITNE 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD + + +F F ++ +AHN+ FD+ FI +N + ++DT+ Sbjct: 486 DVKDAETIDKVLPKFMKF--AEDTVLVAHNSNFDMSFIRKNCNDLNIE--CNYTVMDTIP 541 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A+ P R LN++ K G+++ + H A+ D+ D+ + Sbjct: 542 LAKFLFPELKRYKLNTIAKHLGVSLENH--HRAVDDAKATGDILVH 585 >gi|160893350|ref|ZP_02074137.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50] gi|156865042|gb|EDO58473.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50] Length = 1514 Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 11/183 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTGL K ++IIEIGAV++ D + +R F F+ P +L ITDE Sbjct: 458 YIVFDIETTGLSQKKNKIIEIGAVKVKDGEEIDR-FSEFINPE-EPIPYSIEQLTSITDE 515 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+ I +F +F + +AHNA FD GFI + + + I+DT++ Sbjct: 516 MVMHAPTVDVILPKFLEFCGDD--IVVAHNAAFDTGFIKKNAKDLGMKF--DNTIMDTMT 571 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++ P + L+ +CK + H H A+ D++ + +++K+ + G KT Sbjct: 572 LSHVLLPELGKFTLDRVCKALNVKNEHH--HRAVDDANATAKIFVKLYEMLVER--GVKT 627 Query: 188 NED 190 ED Sbjct: 628 VED 630 >gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 1216 Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 8/197 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + +VFDIETTGL+S + IIEIGAV++ +R + + P GR ++ Sbjct: 416 KIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKSGRIMDR-YSQLINP-GRPIPYHITEI 473 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 ITDE + ++P + +F DF +A +AHNA FD+GFI ++++ + Sbjct: 474 TSITDEQVANEPKIDKVIGKFVDFVG--DAVLVAHNAPFDMGFIKRDIKKY-LNIDYQCS 530 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR P + L L K G+ + H A+ DS ++++I + + Sbjct: 531 VIDTLQMARDLFPDLKKYGLGDLNKTLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588 Query: 182 NFGFKTNEDRFFKEEKK 198 + + + F+ + Sbjct: 589 GLEYMKDINTGFEVNVR 605 >gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2] gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2] Length = 1435 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ ++ F+ F P+ + S + L GITD+ Sbjct: 421 FVVFDLETTGLSAVYDTIIELAAVKIKGGQIIDK-FESFANPH-HELSSTTIDLTGITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ P + ++ ++ + +AHNA FD+GF+ ++ D + IDTL Sbjct: 479 MVKNAPEVEEVIRKYHEWAGDH--IMVAHNASFDMGFLYVCYKKYGIDTVH--ATIDTLE 534 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +AR HP +N LN+L K++GI ++ H A+ D+ S + ++ Q Sbjct: 535 LARMLHPELKNHRLNTLAKKFGIELTQH--HRAIYDTEATSYLLTHLLKEADQ 585 >gi|293115337|ref|ZP_05790986.2| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876] gi|292810483|gb|EFF69688.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876] Length = 1476 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 8/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +K +VFD+ETTGL ND IIEIGAV++ + +R F F+ P +L Sbjct: 445 QKFDDTYVVFDLETTGLSPVNDSIIEIGAVKIQNKKVVDR-FSTFVNPKI-PIPYNIEQL 502 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI D + D + +I EF F + A +AHNA+FDV FI + + I + Sbjct: 503 TGIDDSMVVDADTIENILPEFLKFCD--GAVMVAHNAEFDVTFIREKTKTILGKAFE-CT 559 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++DT+S+AR P+ + L+ + K +++ H H A+ D+ +D+++ ++ Sbjct: 560 VVDTVSLARALIPNLGKFTLDHVAKALNVSLLHH--HRAVDDAECCADIFLALVA 612 >gi|227486439|ref|ZP_03916755.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] gi|227235620|gb|EEI85635.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] Length = 1463 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL D I EIGAV + + T T+ + P R + +++ GITD Sbjct: 448 FVVFDIETTGLLKYRDAITEIGAVRVENGEIT-ETYNQLINPE-RILPEKIVEITGITDA 505 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L DKP + F DF ++ + N FDVGFI +R+ +DTL Sbjct: 506 MLADKPKIDEVLPGFLDFCG--DSLIVGQNTDFDVGFIRENAKRLGLKFDPI--YLDTLP 561 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR + L+ + ++ I + H A D+ + ++IKM Sbjct: 562 MARALFDDMGKFSLDKIARKLDIPAFNH--HRASDDARATAQIFIKM 606 >gi|110638081|ref|YP_678290.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC 33406] gi|110280762|gb|ABG58948.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC 33406] Length = 449 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 9/171 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + DIETTG + +RIIEI + D K T+Q + P R+ L GI Sbjct: 1 MMYSIIDIETTGGHASGNRIIEIAIYKF-DGEKITDTYQTLINPE-RRIPVFITSLTGID 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + D P F+ + E DF +++ ++AHN FD F+ ELQ +N P + T Sbjct: 59 TEMVADAPVFADVAREITDF--TRDSVFVAHNVNFDYTFVKKELQALNMPYNLP--KLCT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + ++R+ P L +LC GI + +R H A D+ + K+++ Sbjct: 115 VRLSRKIFPGLPSYSLGNLCGSLGIDVQNR--HRAAGDAEATVRLLNKLLL 163 >gi|300784117|ref|YP_003764408.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] gi|299793631|gb|ADJ44006.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] Length = 567 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 86/212 (40%), Gaps = 17/212 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +VFD+ETTG I EIGAV++ F + P G P+ + Sbjct: 15 TPLRDTTFVVFDLETTGAPPGPSGITEIGAVKVRGGEVLGE-FATLVNP-GAPIPPQIVS 72 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT + D P + F +F A +AHN+ FD + A + + Sbjct: 73 LTGITQAMVYDAPPIEEVLPAFLEFIG--GAVLVAHNSGFDTSHMRAACEGHGYVW-PKA 129 Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ T+ +ARR P R +L +L +G R H AL D+ DV ++ Sbjct: 130 TVVCTVRLARRVVPRDEVGRYNLTALALLFGART--RPTHRALDDARATVDVLHGLLERV 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 N G + E+ +P +++ +R K Sbjct: 188 G--NLGVHSLEELM-----GYLPEVTVAQRAK 212 >gi|262066554|ref|ZP_06026166.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC 33693] gi|291379736|gb|EFE87254.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC 33693] Length = 1449 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 16/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++ +VFDIETTGL+S ++IIEIGAV++ +R + + P G ++ Sbjct: 416 KIDEEEFVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDR-YSQLINP-GISIPYHITEI 473 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 IT+E + ++P + +F +F +A +AHNA FD+GFI +++ L+ S Sbjct: 474 TSITNEQVANQPKIDEVIGKFVEFIG--DAVLVAHNAPFDMGFIKRDIKEYLNIDLESS- 530 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180 +IDTL +AR P + L L K G+ + H A+ DS ++++I + + Sbjct: 531 VIDTLQMARDLFPDFKKYGLGDLNKSLGLALEKH--HRAVDDSQATANMFIIFLEKYKEK 588 Query: 181 -------INFGFKTN 188 IN GF+ N Sbjct: 589 GIEYLKDINKGFEVN 603 >gi|239827467|ref|YP_002950091.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus sp. WCH70] gi|239807760|gb|ACS24825.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. WCH70] Length = 921 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 9/180 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K R ++ D+ETTG K DRII++G V + + +R F F P R P +L Sbjct: 2 KDRFVIIDLETTGNVPKKGDRIIQLGMVVIENGKIVDR-FSSFFNPE-RDIPPFVQQLTN 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT++ + D PSF+ ++ D Q + ++AHN FD+ F+ EL P I Sbjct: 60 ITEQMVADAPSFAEEAAKVADML--QQSYFVAHNVSFDLQFLQEELHMAGLPPFS-GPTI 116 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DT+ +AR P+ L L K+ I H H A D+ + + ++I ++ Q+ F Sbjct: 117 DTVELARIVFPTAESYKLGDLAKQLHID--HDQPHQADSDAEVTAKLFIALLNRLRQLPF 174 >gi|239995207|ref|ZP_04715731.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC 27126] Length = 711 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 9/171 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 IR +V DIETTG +S +RI EIG V+L+ + +R FQ L P R+ + Sbjct: 536 IRDPAQPYVVVDIETTGGNSSYNRITEIGMVKLVGGKEVDR-FQTLLNPQ-RRIPSNITR 593 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GI+D+ + D P F+ + +F ++A ++AHN FD GFI E R+ + P Sbjct: 594 LTGISDDMVADAPLFAEVAEHVANF--TEDAVFVAHNVNFDYGFIKQEFARLEQSFRRP- 650 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + T+ RR +P L +L K + I + H AL D+ +++ Sbjct: 651 -KMCTVREMRRTYPGLPSYSLANLTKHFHIEMEQH--HRALSDAKAAAELL 698 >gi|332143320|ref|YP_004429058.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327553342|gb|AEB00061.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 715 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 9/171 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R +V DIETTG ++ +RI EIG V+L+ + +R FQ L P R+ + Sbjct: 536 VRDPAQPYVVVDIETTGGNNSYNRITEIGMVKLVGGKEVDR-FQTLLNPQ-RRIPSSITR 593 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GI+D+ + D P F+ + F ++A ++AHN FD GFI E R+ + P Sbjct: 594 LTGISDDMVADAPLFAEVADHIASF--TEDAVFVAHNVNFDYGFIKQEFARLEQSFRRP- 650 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + T+ RR HP S L +L K + I + H AL D+ +++ Sbjct: 651 -KMCTVREMRRTHPGLSSYSLANLTKHFHIDMEQH--HRALSDAKAAAELL 698 >gi|317471587|ref|ZP_07930931.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] gi|316900902|gb|EFV22872.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] Length = 1478 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG +S+ DRIIEIGAV+++ T TF F+ P + +L ITDE Sbjct: 452 FVVFDIETTGFNSQTDRIIEIGAVKVIAGEIT-ETFSEFINPQI-PIPFKITQLTTITDE 509 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + ++ F +F ++ +AHNA FD GFI+ +R++ D I+DTL Sbjct: 510 MVMNADTIDAVLPRFLEFCG--DSVLVAHNAGFDTGFIHENAKRLDLDFHPT--IVDTLG 565 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R ++ L++LCK I + + H A+ D+ ++IK + Sbjct: 566 LSRSLMTHLAKFTLDNLCKNLNIKLE--THHRAVDDATATGKIFIKFV 611 >gi|256544693|ref|ZP_05472065.1| Gram-positive family DNA polymerase III, alpha subunit [Anaerococcus vaginalis ATCC 51170] gi|256399582|gb|EEU13187.1| Gram-positive family DNA polymerase III, alpha subunit [Anaerococcus vaginalis ATCC 51170] Length = 1398 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 11/170 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IVFD+ETTGL D+I EIGAV++ + F + P + + ++L GIT Sbjct: 382 QRFIVFDLETTGLSKYIDKITEIGAVKIENGEII-EVFNELVNPE-KMIPQKVVELTGIT 439 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + DKP + +F +F +++ ++ N FD+GFI ++ +DT Sbjct: 440 NEMVMDKPKIDEVLPKFLEF--SKDSYFVGQNTDFDIGFIKEACDNLSYKFEPI--YLDT 495 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKM 174 L +AR P R L+ L K+ G+ +H H A D+ + ++IK+ Sbjct: 496 LPMARAVFPTMGRFSLDKLAKKLGVGPFNH---HRASDDAMTTAKIFIKL 542 >gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 1438 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 15/204 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL ++ D+IIE+ AV++ D ++ F+ F P+ R S L I+D+ Sbjct: 422 YVVFDVETTGLSNQYDKIIELAAVKVKDGEIIDK-FERFSNPHER-LSETIKNLTHISDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + +EF + +A ++AHNA FD+GFI+ + + + +IDTL Sbjct: 480 MLVDAPEIEEVLTEFKSWVG--DAIFVAHNASFDMGFIDTGYEHVGIGA-STNGVIDTLE 536 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + ++ LN L K+YG+ ++ H A+ D+ + ++IKM+ + Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYMFIKMLKQLEALGVHNH- 593 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 ++ ++ N KR +P Sbjct: 594 ------QDINTSLSNEDAYKRARP 611 >gi|169350436|ref|ZP_02867374.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552] gi|169292756|gb|EDS74889.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552] Length = 1439 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 6/173 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL +D I E GAV++ + +R Q F+ P G+ S L IT+E Sbjct: 402 YVAFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-MQKFINP-GKTISSRISSLTNITNE 459 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K++P+ + E +FF + +AHNA FDVGF+N L+R N + + IID+L+ Sbjct: 460 MVKNEPTIDKVLPEIMEFFG--DCILVAHNASFDVGFLNENLRRSNMSEI-KNPIIDSLA 516 Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +AR P L ++C+ Y + H A D+ +L DV+ M+ Q Sbjct: 517 LARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAKVLGDVFNLMIHQIMQ 569 >gi|332298225|ref|YP_004440147.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM 12168] gi|332181328|gb|AEE17016.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM 12168] Length = 186 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 8/171 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 FD ETTGL + +R+IEIGA+ R + + + P G+ P A ++ ITD+ Sbjct: 23 FTAFDTETTGLKPEYERLIEIGAIRFDKNGIIAR-YDILINP-GKPIPPGASAINNITDD 80 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P S+ +F F +++ +AHNA FD+ F+N EL+R +PL + DT+ Sbjct: 81 MVRNCPLIESVLPDFLTFV--RDSVLVAHNAGFDLSFVNKELERSGFNPLKNNAA-DTVH 137 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +AR + P + L SL +GI + R+ H A D+ + +V+++ + G Sbjct: 138 LARSRFPQLPNHKLQSLAAYFGIDV--RNAHRAEDDARVCMEVFLRCLNAG 186 >gi|307298437|ref|ZP_07578240.1| DNA polymerase III, alpha subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306915602|gb|EFN45986.1| DNA polymerase III, alpha subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 1412 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL+ K D IIEIGA++ + ++ TF F+ P ++ S L GIT++ Sbjct: 402 FIVFDLETTGLNPKEDEIIEIGAIK-MKGNEILETFSSFVKPQ-KELSSLITSLTGITED 459 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTL 127 L + + EF F + +AHNA FD GFI +++ D P IDTL Sbjct: 460 MLSGAGTIKQVLPEFTKF--AEGGILVAHNASFDYGFIRNSVKKYFGGDWEMPC--IDTL 515 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++A+ + + L+++ KR + H H A D+ + ++V K + + Sbjct: 516 ALAKSLYRAKSYSLDNVVKRLK--LGHFDHHRAYEDAKVTAEVLKKFLQQAKKRGV 569 >gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d] gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d] Length = 762 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + Sbjct: 400 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 457 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + Sbjct: 458 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 514 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 515 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 572 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + N G + +F + K+ PN Sbjct: 573 RFQEANLGKMNDYAKFGQVYKRAKPN 598 >gi|332306380|ref|YP_004434231.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173709|gb|AEE22963.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 788 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +V D+ETTG RI EIGAV++++ + ++ + P R+ +L GI Sbjct: 620 QQPYVVVDVETTGGCKPGHRITEIGAVKVINGRVVD-SWSSLINPE-RRVPHFITRLTGI 677 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +++ +++ P F + + F Q+ ++AHN FD GF E R+ + P + Sbjct: 678 SNDMVEEAPLFCEVIDDLECFM--QDCIFVAHNVNFDYGFFKLEYARLERSFSMP--KLC 733 Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 T+ R+ +P S+ L +L K YG+++ + H AL D+ +++ I Sbjct: 734 TVREMRKYYPGSKSYSLGNLTKEYGLSLDNH--HRALCDAQAAAELLI 779 >gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] Length = 1450 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 11/204 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N+ +VFD+ETTGL + D IIE+ AV++ + +F F+ P G S + L Sbjct: 420 LNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITDE ++ S + F +F + +AHNA FD+GF+N R P + + Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEATNPV 534 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179 IDTL +AR +P R L L K++G+++ H A+ D+ + +++K + Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203 + + + NE + K Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPF 616 >gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733] gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12] gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium PC4.1] gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733] gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12] gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium PC4.1] Length = 1450 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 11/204 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N+ +VFD+ETTGL + D IIE+ AV++ + +F F+ P G S + L Sbjct: 420 LNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITDE ++ S + F +F + +AHNA FD+GF+N R P + + Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEATNPV 534 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179 IDTL +AR +P R L L K++G+++ H A+ D+ + +++K + Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203 + + + NE + K Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPF 616 >gi|168334980|ref|ZP_02693097.1| DNA polymerase III, alpha subunit [Epulopiscium sp. 'N.t. morphotype B'] Length = 1454 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 97/176 (55%), Gaps = 9/176 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + ++FD+ETTGL S +++IIEIGAV++ + + TF F+ P +L GI Sbjct: 433 EDEFVIFDLETTGLSSSSNKIIEIGAVKIRNGKIID-TFSSFVNPET-DIPEHITELTGI 490 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + D P+ +++ +F +F A +AHNA FD+GFI + + + ID Sbjct: 491 TTTDIADAPTIAAVLPQFVEFCAS--AILVAHNADFDMGFILHNTRDLAIEF--NKTYID 546 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 T+S+AR P+ N L+++ + +++ ++ H A+ D+ +++++K + +Q Sbjct: 547 TVSMARILLPNLGNAKLSNIANKLKVSL--KNHHRAVDDASATAEIFLKFIEMLAQ 600 >gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis HTE831] gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis HTE831] Length = 1428 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 8/171 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +VFD+ETTGL + D IIE+ AV++ +R F+ F P+ S + L GI Sbjct: 411 EDTFVVFDVETTGLSAVYDTIIELAAVKIKGGEIVDR-FESFANPH-HALSQTTIDLTGI 468 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ + D P + + +F + N +AHNA FD+GF+N QRI+ + + ++D Sbjct: 469 TDDMVNDAPEVADVLKDFHTWMG--NDILVAHNASFDMGFLNQGFQRIDYEKAS-NPVVD 525 Query: 126 TLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR P RN LN+LCK I ++ H A+ D+ + K++ Sbjct: 526 TLELARFLLPELRNHRLNTLCKHLDIELTQH--HRAIYDAEATGYLLWKLV 574 >gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B] gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum B str. Eklund 17B] Length = 1452 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ND+IIEIGAV++ + F F+ P R + +L I + Sbjct: 439 FVVFDLETTGFSPVNDKIIEIGAVKIKSGEIIDE-FSCFVNPQ-RDIPYKITQLTSIDNN 496 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD +I +F +F ++ +AHNA FD GFI + +N P I+DT++ Sbjct: 497 MVKDADVIENILPKFMEFC--EDTVIVAHNAAFDTGFIKKNCRDLNIRFDIP--ILDTVT 552 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + R +P + LN + K GI++ + H A+ D+ +D+ +K Sbjct: 553 LCRFLYPELKKVKLNIVAKFLGISLENH--HRAVDDAKATADILLK 596 >gi|302386245|ref|YP_003822067.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1] gi|302196873|gb|ADL04444.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1] Length = 1516 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 11/183 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG S +RIIEIGAV++ + + ++ F F+ P+ E KL GI D Sbjct: 492 YVVFDIETTGFSSSRNRIIEIGAVKVENGTIADK-FSTFVNPD-VPIPFEIEKLTGINDN 549 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + I F +F N+ +AHNA FDV FI R+N +IDT++ Sbjct: 550 MVLPYPKINEILPRFLEFCG--NSVLVAHNAAFDVSFIAYNAARLNLAFEPT--VIDTVA 605 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P+ R L+++ K +++ + H A+ D+ +++++ + + G +T Sbjct: 606 LARLLLPNLNRYKLDTVAKALVVSLENH--HRAVDDAGCTAEIFVAFVKMLRER--GVET 661 Query: 188 NED 190 ++ Sbjct: 662 LDE 664 >gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c] gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c] Length = 758 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ D +R F F+ P+ S + Sbjct: 396 MDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDR-FDKFINPH-HLLSDTTIN 453 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE +++ + + +F +F+ Q+ HN +FD+GF+NA L+R N D + Sbjct: 454 LTSITDEMVQNADDENIVIRQFQEFY--QDLPLCGHNVQFDIGFLNAALRRCNMDII-TQ 510 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 511 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFYE 568 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + N G + +F + K+ PN Sbjct: 569 RFQEANLGKMNDYAKFGQVYKRAKPN 594 >gi|349620|gb|AAA17435.1| DNA polymerase III epsilon subunit [Buchnera aphidicola] Length = 179 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 84/179 (46%), Positives = 112/179 (62%), Gaps = 11/179 (6%) Query: 5 NKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 N R IV D ETTG++S N RIIEIGA+E+++ T + F ++ PN R +A Sbjct: 3 NTQRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPN-RLIESDA 61 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK---D 116 K+HGITD+FL DKPSF I +F+++ +N+E I HNA FDVGFIN E + K D Sbjct: 62 SKIHGITDDFLSDKPSFKDIAKDFFNYI--KNSELIIHNASFDVGFINQEFSMLTKKIQD 119 Query: 117 PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + IIDTL IAR+ P +N L++LC RY I SHR HGA+LD+ LL +Y+ M Sbjct: 120 ISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLLMT 178 >gi|332559019|ref|ZP_08413341.1| putative exonuclease [Rhodobacter sphaeroides WS8N] gi|332276731|gb|EGJ22046.1| putative exonuclease [Rhodobacter sphaeroides WS8N] Length = 695 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 7/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61 R + +VFD ETTGL D I++I AV +++ + + P+ R P + + Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RPIPPSSTE 548 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGITD + + P + F F + A +AHNA FD+ F+ I + +P Sbjct: 549 VHGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP- 605 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+DT+ ++ S + L++L R GITI ++H A+ D+ +D ++K++ Sbjct: 606 -ILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLL 659 >gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 1443 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 5/180 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 K VFD+ETTGL S+ D IIE G + D + ++ Q+F+ P S + Sbjct: 389 TELEKGTYCVFDLETTGLSSRFDHIIEFGGQIMKDRTCI-KSLQLFVKPPIA-LSAFTTE 446 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L I++E +K+ F+ E +F ++ +AHNA FD GF+NAEL+RI + PL + Sbjct: 447 LTNISEENMKNAKPFAECVDEILEFIG--DSILVAHNASFDYGFLNAELERIGRKPL-MN 503 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR L +L ++YGI H A D+ +L+ V++ M+ I Sbjct: 504 PVIDTLDLARSMMDRKGYRLGNLARQYGIRYDEDVAHRADYDAEVLAQVFMHMLNDLKHI 563 >gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1450 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG ND+IIEIGAV++ + + F F+ P R +L I ++ Sbjct: 437 YVVFDIETTGFSPVNDKIIEIGAVKIKNGEVIDN-FSHFVNPE-RSIPYVITELTSINND 494 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D + + +F +F ++ +AHNA FD GFI + + D I+DT+ Sbjct: 495 MVRDAETIEILLPKFMEFCA--DSVLVAHNAAFDTGFIKKNCRDLGIDF--NYSIMDTVP 550 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR P + LN + K GI++ + H A+ D+ +++ +K Sbjct: 551 LARFLCPDLKKVKLNLVAKHLGISLDNH--HRAVDDAKCTAEILLKF 595 >gi|251779220|ref|ZP_04822140.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083535|gb|EES49425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1452 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ND+IIEIGAV++ ++ F F+ P R + +L I + Sbjct: 439 FVVFDLETTGFSPINDKIIEIGAVKIKSGEIIDK-FSCFVNPK-RDIPYKITQLTSIDNN 496 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD +I +F +F + +AHNA FD GFI + +N + P I+DT++ Sbjct: 497 MVKDADVIENILPKFMEFC--EGTVVVAHNAAFDTGFIKKNCRDLNINFDLP--ILDTVT 552 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + R +P + LN + K GI++ + H A+ D+ +D+ +K Sbjct: 553 LCRFLYPELKKVKLNIVAKFLGISLENH--HRAVDDAKATADILLK 596 >gi|254463814|ref|ZP_05077225.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacterales bacterium Y4I] gi|206684722|gb|EDZ45204.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacterales bacterium Y4I] Length = 469 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 7/184 (3%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61 + + + +VFD ETTGL D I++IGA+ ++ F + P G + K Sbjct: 271 KLSNLSYVVFDTETTGLLPHKDEIVQIGALRVVRNRIVAGEQFGTLVDP-GTPIPAASTK 329 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI+D ++ P F F +A +AHNA FD+ F+ +R P Sbjct: 330 VHGISDAMVQGAPDIGQAARAFHRF--ASDAVIVAHNAPFDMAFLRRHAKRAGVSWDQP- 386 Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DT+ ++ S + L++LC+R +TI +H A+ D+ ++V+ KM+ Sbjct: 387 -VLDTVLLSAVLFGASQSHTLDALCERLEVTIPPALRHTAMGDAQATAEVFCKMLPMLEA 445 Query: 181 INFG 184 G Sbjct: 446 RGLG 449 >gi|188589600|ref|YP_001920613.1| DNA polymerase III PolC [Clostridium botulinum E3 str. Alaska E43] gi|188499881|gb|ACD53017.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum E3 str. Alaska E43] Length = 1452 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ND+IIEIGAV++ ++ F F+ P R + +L I + Sbjct: 439 FVVFDLETTGFSPINDKIIEIGAVKIKSGEIIDK-FSCFVNPK-RDIPYKITQLTSIDNN 496 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD +I +F +F + +AHNA FD GFI + +N + P I+DT++ Sbjct: 497 MVKDADVIENILPKFMEFC--EGTVVVAHNAAFDTGFIKKNCRDLNINFDLP--ILDTVT 552 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + R +P + LN + K GI++ + H A+ D+ +D+ +K Sbjct: 553 LCRFLYPELKKVKLNIVAKFLGISLENH--HRAVDDAKATADILLK 596 >gi|77464143|ref|YP_353647.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1] gi|77388561|gb|ABA79746.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1] Length = 695 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 7/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61 R + +VFD ETTGL D I++I AV +++ + + P+ R P + + Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RPIPPSSTE 548 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGITD + + P + F F + A +AHNA FD+ F+ I + +P Sbjct: 549 VHGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP- 605 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+DT+ ++ S + L++L R GITI ++H A+ D+ +D ++K++ Sbjct: 606 -ILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLL 659 >gi|119387281|ref|YP_918315.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] gi|119377856|gb|ABL72619.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] Length = 659 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 9/208 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + +VFD ETTGLD DRI++I + + T F + P GR P + + Sbjct: 447 RLADLTCVVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDP-GRPIPPASTAV 505 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGITD + P ++ + F F ++ +AHNA FD+GF+ + ++ Sbjct: 506 HGITDAMVAGAPDMTAALTAFHHF--AEDTVLVAHNAPFDMGFLRRAVPETGAHF--DNQ 561 Query: 123 IIDT-LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DT L A S+ + L++L +R GI I ++H A+ D+ ++ Y++++ Sbjct: 562 VLDTVLLSAMLWGQSAPHSLDALTERLGIVIPPEARHTAMGDARATAEAYLRLIAALE-- 619 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD 209 G ED E ++ + + Sbjct: 620 AKGLDRFED-VLAEARRHRRLVDDANKP 646 >gi|282850817|ref|ZP_06260191.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 224-1] gi|282557769|gb|EFB63357.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 224-1] Length = 1389 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + Sbjct: 365 MDYRDREYVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTIN 422 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + +F DF+ ++ HN +FDVGF+NA L+R D + Sbjct: 423 LTSITDEMVGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-Q 479 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 480 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFNA 537 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + + G + ++ + K+ P+ Sbjct: 538 RFHEADLGKMNDYAKYGQVYKRAKPS 563 >gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b] gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b] Length = 1430 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 98/174 (56%), Gaps = 8/174 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++IIE+ V++ D +R F+ F P S ++L GITD+ Sbjct: 410 YVVFDVETTGLSAVYNKIIELAGVKIKDGEIIDR-FEAFADPK-HALSATTIELTGITDD 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +P I F D+ ++ +AHNA FD+GF+ A L+ +P D +IDTL Sbjct: 468 MVQGQPDPEVITKRFVDWCG--DSILVAHNASFDMGFLEATLRSGGHEP-DDYPVIDTLE 524 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +AR P+ +N LN+L KR+ I ++ H A+ D+ + + +K++ Q+ Sbjct: 525 LARTLMPTLKNHRLNTLAKRFDIELTQH--HRAIYDAEATAYLLMKLLDLAKQM 576 >gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15] gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15] Length = 1450 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 11/204 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N+ +VFD+ETTGL + D IIE+ AV++ + +F F+ P G S + L Sbjct: 420 LNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITDE ++ S + F +F + +AHNA FD+GF+N R P + + Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 534 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179 IDTL +AR +P R L L K++G+++ H A+ D+ + +++K + Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203 + + + NE + K Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPF 616 >gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E980] gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E980] Length = 1450 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 11/204 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N+ +VFD+ETTGL + D IIE+ AV++ + +F F+ P G S + L Sbjct: 420 LNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITDE ++ S + F +F + +AHNA FD+GF+N R P + + Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKGTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 534 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179 IDTL +AR +P R L L K++G+++ H A+ D+ + +++K + Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203 + + + NE + K Sbjct: 593 HMLYHDQLNEHIGEGDSYKRARPF 616 >gi|238852616|ref|ZP_04643026.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 202-4] gi|238834762|gb|EEQ26989.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus gasseri 202-4] Length = 1432 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + Sbjct: 408 MDYRDREYVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTIN 465 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + +F DF+ ++ HN +FDVGF+NA L+R D + Sbjct: 466 LTSITDEMVGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-Q 522 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 523 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFNA 580 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + + G + ++ + K+ P+ Sbjct: 581 RFHEADLGKMNDYAKYGQVYKRAKPS 606 >gi|116629466|ref|YP_814638.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri ATCC 33323] gi|116095048|gb|ABJ60200.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus gasseri ATCC 33323] Length = 1432 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + Sbjct: 408 MDYRDREYVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTIN 465 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + +F DF+ ++ HN +FDVGF+NA L+R D + Sbjct: 466 LTSITDEMVGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-Q 522 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 523 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFNA 580 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + + G + ++ + K+ P+ Sbjct: 581 RFHEADLGKMNDYAKYGQVYKRAKPS 606 >gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM 6725] gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM 6725] Length = 1402 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG DS+ DRIIEIGAV++ + T R F F+ P G K +L GI + Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITER-FSTFVDPEG-KIPVRISELTGIYQD 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S EF F + +AHNA+FD+GF+ Q + IDTL Sbjct: 448 MVDKAPKLSDAILEFEKF--ASGSVLVAHNAQFDIGFLKKAYQECGI--IFDYTYIDTLE 503 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++RR S + LN + + I + H H A D+ + ++I ++ + Sbjct: 504 LSRRLLTDLSSHKLNKVAEFLNIELKHH--HRADSDAETTAGIFISLVERLKARGY 557 >gi|300361904|ref|ZP_07058081.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03] gi|300354523|gb|EFJ70394.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03] Length = 1432 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 12/199 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + L ITDE Sbjct: 415 YVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTINLTSITDE 472 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +F DF+ ++ HN +FDVGF+NA L+R D + ++DTL Sbjct: 473 MVGAADDEKDVIKKFKDFYGDR--PLCGHNVQFDVGFVNAALRRAGLDEIS-QPVVDTLE 529 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----VGGSQINF 183 ++R HP R+ L+SL K+Y + + H H A D+ + K++ + + Sbjct: 530 VSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFNARFHEADL 587 Query: 184 GFKTNEDRFFKEEKKTVPN 202 G + ++ + K+ P+ Sbjct: 588 GKMNDYAKYGQVYKRAKPS 606 >gi|323466335|gb|ADX70022.1| DNA polymerase subunit III [Lactobacillus helveticus H10] Length = 1436 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 14/211 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + Sbjct: 412 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTIN 469 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + +F DF+ ++ HN +FDVGF+NA L+R + Sbjct: 470 LTSITDEMVSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEI-TQ 526 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL ++R HP R+ L+SL K+Y +++ H H A D+ + K++ Sbjct: 527 PVVDTLEVSRLLHPEQNRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMYKLLDA--- 581 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 F K NED + + KR +P Sbjct: 582 --FKKKYNEDN-LNNLNGYAAHGEVYKRARP 609 >gi|161507686|ref|YP_001577640.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348675|gb|ABX27349.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 1438 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 14/211 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + Sbjct: 414 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTIN 471 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + +F DF+ ++ HN +FDVGF+NA L+R + Sbjct: 472 LTSITDEMVSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEI-TQ 528 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL ++R HP R+ L+SL K+Y +++ H H A D+ + K++ Sbjct: 529 PVVDTLEVSRLLHPEQNRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMYKLLDA--- 583 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 F K NED + + KR +P Sbjct: 584 --FKKKYNEDN-LNNLNGYAAHGEVYKRARP 611 >gi|260906794|ref|ZP_05915116.1| hypothetical protein BlinB_15797 [Brevibacterium linens BL2] Length = 581 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 11/218 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +++ ++ D+ETTG + I EIGAV+ FQ + P SP + Sbjct: 24 TPLHEVTFVIVDLETTGTTAGKSEITEIGAVKTRGGEVLGE-FQSLVKPEESVISPFVAR 82 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT + D PS S+ F +F A +AHNA FD+GFI + ++++ P Sbjct: 83 LTGITHAMVDDAPSIRSVLPSFLEFC--VGAVLVAHNAPFDIGFIRSACEKLDYHWPQP- 139 Query: 122 RIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++DT++++RR + + L++L +G +S H AL D+ +V +++ Sbjct: 140 TVLDTVTLSRRVVSRDEVRNHKLSTLAAHFGTEVS--PDHRALSDAKATGEVLHRVLERF 197 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 +G T E+ + + K + Sbjct: 198 G--GYGITTLEELATVRQAGWAKRQAKSHLAKGVPAEP 233 >gi|260101367|ref|ZP_05751604.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075] gi|260084819|gb|EEW68939.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075] Length = 1436 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 14/211 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + Sbjct: 412 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTIN 469 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + +F DF+ ++ HN +FDVGF+NA L+R + Sbjct: 470 LTSITDEMVSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEI-TQ 526 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL ++R HP R+ L+SL K+Y +++ H H A D+ + K++ Sbjct: 527 PVVDTLEVSRLLHPEQNRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMYKLLDA--- 581 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 F K NED + + KR +P Sbjct: 582 --FKKKYNEDN-LNNLNGYAAHGEVYKRARP 609 >gi|109898663|ref|YP_661918.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] gi|109700944|gb|ABG40864.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica T6c] Length = 769 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 9/168 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +V D+ETTG RI EIGAV+++D SK ++ + P R+ +L GI Sbjct: 601 QQPYVVVDVETTGGCKPGHRITEIGAVKVID-SKVVDSWSSLINPE-RRVPHFITRLTGI 658 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +++ ++D P F + + F Q+ ++AHN FD GF E R+ + P + Sbjct: 659 SNDMVEDAPLFCEVIDDLEAFM--QDCIFVAHNVNFDYGFFKLEYGRLERAFSMP--KLC 714 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 T+ R+ +P L L K YG+++ + H AL D+ +++ I Sbjct: 715 TVREMRKYYPGSPSYSLGKLSKEYGLSLDNH--HRALCDAQAAAELLI 760 >gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15] gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15] Length = 1431 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 96/180 (53%), Gaps = 8/180 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K +VFD+ETTGL + ++IIE+ AV++ D ++ F+ F P S + L Sbjct: 408 ELEKATFVVFDVETTGLSAMYNKIIELAAVKIYDGDVIDK-FEAFADPK-HLLSATTIDL 465 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GITDE ++ KP + EF D+ + +AHNA FD+GF+NA L R Sbjct: 466 TGITDEMVRGKPDPEQVVKEFMDWAG--GSILVAHNASFDIGFLNATL-RSGNHEESTLP 522 Query: 123 IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR PS +N LN+L KR+ I ++ H A+ D+ + +K++ ++ Sbjct: 523 VIDTLELARVLMPSLKNHRLNTLAKRFDIELTQH--HRAIYDAEATGYLMLKLLQMADEM 580 >gi|225018411|ref|ZP_03707603.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum DSM 5476] gi|224948829|gb|EEG30038.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum DSM 5476] Length = 1453 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL+++ +R+ EIGAV L + T + F+ P + P+ +L GITD Sbjct: 434 FVVFDTETTGLNAQTERLTEIGAVVLKNGEIT-EEYDEFVNPE-KPIPPKITELTGITDS 491 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ F+ F + IAHNA FD+GF+ A R IDTL Sbjct: 492 MVADAPTEKEALERFFAF--AKGRILIAHNANFDMGFLAAAAARHGLS--CDFTYIDTLP 547 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I R P+ R + L+++ K + + H A D+ +L V+ + Sbjct: 548 IVRTLFPTLRNHKLDTVVKHLK--LGDFNHHRACDDAKILGLVFAE 591 >gi|42519364|ref|NP_965294.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533] gi|41583652|gb|AAS09260.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533] Length = 1432 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 13/207 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +N+ ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + Sbjct: 408 MDYRNR-EYVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTI 464 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L ITDE + + +F +F+ ++ HN +FDVGF+NA L+R + + Sbjct: 465 NLTSITDEMVGAADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEI-T 521 Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM---- 175 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 522 QPVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFN 579 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPN 202 + + G + ++ + K+ P+ Sbjct: 580 ERFHEADLGKMNDYAKYGQVYKRAKPS 606 >gi|157961820|ref|YP_001501854.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC 700345] gi|157846820|gb|ABV87319.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC 700345] Length = 215 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 89/173 (51%), Gaps = 9/173 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL + DR IEIGAV L D +R FQ + P G + S GI++ Sbjct: 19 IVLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDR-FQQLMNP-GFRISGFIESYTGISNA 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D PS + ++F DF + N +AHNA FD F++AEL+RIN L + ++ Sbjct: 77 MLADAPSCEEVMAQFADFIGDYN--LVAHNASFDQRFLDAELKRINCHYL--GQFACSML 132 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 IARR + + + L SL I H AL DS + + +++ M+ Q Sbjct: 133 IARRLYQAAPNHKLGSLVSYKNIQ-HDGVFHRALADSEMTASLWLAMLEDLQQ 184 >gi|227872422|ref|ZP_03990766.1| possible DNA-directed DNA polymerase III alpha subunit [Oribacterium sinus F0268] gi|227841719|gb|EEJ52005.1| possible DNA-directed DNA polymerase III alpha subunit [Oribacterium sinus F0268] Length = 821 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 11/182 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTG D + + IIEIGAV++ + +R VF+ P G +L I D Sbjct: 519 VVFDLETTGFDPRVNHIIEIGAVKIENGKIIDR-MDVFVNP-GVPIPFRITQLTSIDDSM 576 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D + +F DF ++A +AHNA FD F++ + + +N P +IDT+++ Sbjct: 577 VMDAKGIEEVLPQFLDF--AKDAILVAHNADFDYHFVSTKAKALNIPFSAP--VIDTVAL 632 Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R P R L+++ K I + H H A+ D+ + +Y+K + Q G + Sbjct: 633 SRLLLPRLNRFKLDTVAKELKIELLHH--HRAVDDAEATARIYLKELEILEQR--GVSSL 688 Query: 189 ED 190 E+ Sbjct: 689 EE 690 >gi|226356768|ref|YP_002786508.1| DNA polymerase III subunit epsilon [Deinococcus deserti VCD115] gi|226318758|gb|ACO46754.1| putative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit) [Deinococcus deserti VCD115] Length = 202 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 89/177 (50%), Gaps = 10/177 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCP-----NGRKNSPEAL 60 M +VFD+ETTGL + D I+EIGA+ +++ ++ + P A Sbjct: 1 MNVVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQ 60 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI++E ++ P+ + EF +F ++ +AHN FD GF+ A+ +R+ Sbjct: 61 RVHGISNEMVRSAPTIEEVLPEFLEFVG--DSAVVAHNVGFDCGFMRAQARRLGMVWAPA 118 Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 T+ ++RR P R ++L L +R G+ + +H + D + + Y++++ Sbjct: 119 GEH-CTVQLSRRAFPKERAHNLTVLAERLGLNFAPGGRHRSFGDVQVTAHAYVRLLE 174 >gi|288959104|ref|YP_003449445.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum sp. B510] gi|288911412|dbj|BAI72901.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum sp. B510] Length = 702 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 55/194 (28%), Positives = 97/194 (50%), Gaps = 12/194 (6%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59 +++ +VFD ETTGL D I++I AV ++ T TF + + P R PE+ Sbjct: 502 TPLDRLHYVVFDTETTGLSPSAGDEIVQIAAVRIVGGRILTGETFNMLVDPK-RPIPPES 560 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + HGITD + KP+ ++ +F F + A +AHNA FD+ F+ + + Sbjct: 561 IPFHGITDAMVAGKPTIDTVLPQFRSFVS--GAVLVAHNAAFDLKFLKMKERAAGVTF-- 616 Query: 120 PSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++DT+ ++R + L+ + +R GI + R H AL DS + + V+++M+ Sbjct: 617 DCPVLDTMLLSRMLLGNDGDHTLDGIAQRLGIAVVDR--HTALGDSLVTAAVFLRMIEML 674 Query: 179 SQINFGFKTNEDRF 192 + G +T +D Sbjct: 675 R--DQGVRTLDDAI 686 >gi|227890229|ref|ZP_04008034.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227849231|gb|EEJ59317.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 1432 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + Sbjct: 408 MDYRDREYVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTIN 465 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + +F +F+ ++ HN +FDVGF+NA L+R + + Sbjct: 466 LTSITDEMVGAADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEI-TQ 522 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 523 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFNE 580 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + + G + ++ + K+ P+ Sbjct: 581 RFHEADLGKMNDYAKYGQVYKRAKPS 606 >gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1] gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum Rt17-B1] Length = 1390 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 92/178 (51%), Gaps = 11/178 (6%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + +V D+ETTGL+ ++D I+EIGAV+ D + F F+ PN K + ++L + G Sbjct: 379 DDYTYVVLDLETTGLNPRSDEIMEIGAVKTRDGKVIDE-FHTFVRPN--KLNKKSLNITG 435 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT++ LKD P + + +F +++ +AHNA FD+ F+ L + + P I Sbjct: 436 ITEDMLKDAPDIMQVLPKLLEFI--KDSILVAHNADFDMTFLKNILSKSGIEFNPP--YI 491 Query: 125 DTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 DTL +++ + L+ L +G + H AL D+ + +V+ K++ + Sbjct: 492 DTLRLSQALLRNKIKSFSLDKLVDHFG--LGAFQHHRALDDARVTVNVFWKLIELAKK 547 >gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM 12042] gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM 12042] Length = 1451 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 6/168 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V+D+ETTGL D IIE GAV +++ + T Q+F+ P + + IT+E Sbjct: 399 YVVYDLETTGLSCSFDHIIEFGAV-VIERGEIKETKQLFVKPP-VPINAFISEKTNITNE 456 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + F+ + E DF ++ +AHNA FD F+N EL+RI PL + ++DTL Sbjct: 457 DVAQAKPFAEVAQELVDFIGDK--VLVAHNATFDYNFLNEELKRIGMAPL-TNPVVDTLD 513 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR H R L ++ + Y IT H A D+ +L+ V++ M+ Sbjct: 514 LARALHSDRRSYRLGNIARHYRITYDEEVAHRADYDADVLASVFMLMI 561 >gi|253795564|ref|YP_003038660.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia cicadicola Dsem] gi|253739872|gb|ACT34207.1| putative DNA polymerase III, epsilon subunit [Candidatus Hodgkinia cicadicola Dsem] Length = 182 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 101/170 (59%), Gaps = 3/170 (1%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K+R+I+ D ETTGL K DR+IE+ A++L D +T T+ + P K S A +HGI Sbjct: 5 KIREIILDTETTGLSVKTDRLIELAAIKLEDGRRTPHTYHSYFNPQPVKVSRSAFNVHGI 64 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++EFL DKP+F S EF +F E IAHNA+FD+ IN ELQ DP+D D Sbjct: 65 SNEFLSDKPAFKSCAREFLEFVA--GHELIAHNARFDLQIINRELQMAGADPIDAGCWRD 122 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +LSIA++ P+ N + +LCKR+ + + H A D LL+ VY ++ Sbjct: 123 SLSIAKQLFPNRSNSMAALCKRFNLECETET-HSAARDCELLARVYELIL 171 >gi|227892603|ref|ZP_04010408.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047] gi|227865588|gb|EEJ73009.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047] Length = 1435 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 14/211 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + + Sbjct: 411 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTIN 468 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + + +F DF+ ++ HN +FDVGF+NA L+R + Sbjct: 469 LTSITDEMVSAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEI-TQ 525 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL ++R HP R+ L+SL K+Y +++ H H A D+ + K++ Sbjct: 526 PVVDTLEVSRLLHPEQNRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMYKLLDA--- 580 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 F K NED + + KR +P Sbjct: 581 --FKKKYNEDN-LNNLNGYAAHGEVYKRARP 608 >gi|229155207|ref|ZP_04283319.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 4342] gi|228628334|gb|EEK85049.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 4342] Length = 934 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L KR+ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKRH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|182419729|ref|ZP_02950970.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237665534|ref|ZP_04525522.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376466|gb|EDT74047.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237658481|gb|EEP56033.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1472 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG K ++I EIG +++ D ++ F F+ P + P +++ ITD+ Sbjct: 446 YCVLDLETTGFSPKLEKITEIGIMKVKDGKVIDK-FSTFVNPE-KPIPPRVVEVTNITDD 503 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ + +F + +F + + +AHNA+FD+GF+ + + D +DTLS Sbjct: 504 MVRNAETIDKVFPKMLEFI--EGSILVAHNAEFDIGFLRHYAKVLGHDF--DFTYLDTLS 559 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ P + L + K GI + H AL D V+ M+ Sbjct: 560 LAQDLFPQYKSYKLGRIAKNLGIKVE--VAHRALDDVDTTVKVFNVMI 605 >gi|261251946|ref|ZP_05944520.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891] gi|260938819|gb|EEX94807.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891] Length = 204 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 89/186 (47%), Gaps = 11/186 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M N IV D ETTGL DR IEIGAV+L+D + TFQ + P G + S Sbjct: 1 MAAANS--VIVLDFETTGLSPNMGDRAIEIGAVKLIDGQVVD-TFQQLMNP-GFRVSSFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L PS + + S+F DF N +AHNA FD F++AE +RIN++ Sbjct: 57 EGYTGITNNMLAGAPSCAEVMSDFNDFIGNDN--LVAHNASFDKRFLDAEFERINRN--Y 112 Query: 120 PSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L ++RR + + L L + I H AL DS + + +++ M+ Sbjct: 113 RGEFACSLLVSRRLNQEAPSHKLGDLVRYMNIDNDG-VFHRALADSQMTAKLWLLMLEDM 171 Query: 179 SQINFG 184 Q Sbjct: 172 QQQGIH 177 >gi|221640011|ref|YP_002526273.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131] gi|221160792|gb|ACM01772.1| DNA polymerase III, epsilon subunit precursor [Rhodobacter sphaeroides KD131] Length = 695 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 7/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61 R + +VFD ETTGL D I++I AV +++ + + P+ R P + + Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RSIPPSSTE 548 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGITD + + P + F F + A +AHNA FD+ F+ I + +P Sbjct: 549 VHGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP- 605 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+DT+ ++ S + L++L R GITI ++H A+ D+ +D ++K++ Sbjct: 606 -ILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVATADAFLKLL 659 >gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408] gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408] Length = 1450 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 11/204 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +VFD+ETTGL + D IIE+ AV++ + +F F+ P G S + L Sbjct: 420 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITDE ++ S + F +F ++ +AHNA FD+GF+N R P + + Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 534 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179 IDTL +AR +P R L L K++G+++ H A+ D+ + +++K + Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203 + + + NE + K Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPF 616 >gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741] gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741] Length = 1451 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 8/189 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD ETTGL ++ D++IE+ AV++ + + TF+ F+ P G S + L ITD+ Sbjct: 433 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVID-TFEEFIDP-GHPLSQTTINLTSITDD 490 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S +F F +F ++ + HNA FDV F+N +R N + + IDTL Sbjct: 491 MVRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMI-QEPWIDTLP 547 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR +P + LN+L K+ I + H H A+ D+ +Y M+ + + Sbjct: 548 LARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAMLKDAEEKQILYHD 605 Query: 188 NEDRFFKEE 196 + ++ E Sbjct: 606 DFNKHVGEN 614 >gi|268319259|ref|YP_003292915.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785] gi|262397634|emb|CAX66648.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785] Length = 1432 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 12/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + Sbjct: 408 MDYRDREYVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTIN 465 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + +F +F+ ++ HN +FDVGF+NA L+R + + Sbjct: 466 LTSITDEMVGAADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEI-TQ 522 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----V 176 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 523 PVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFNE 580 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPN 202 + + G + ++ + K+ P+ Sbjct: 581 RFHEADLGKMNDYAKYGQVYKRAKPS 606 >gi|104161981|emb|CAJ75690.1| DNA polymerase III, alpha subunit [uncultured Thermotogales bacterium] Length = 1428 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL+ K D IIEIGA++ + S+ T+ F+ P ++ S L GIT++ Sbjct: 418 FLVFDLETTGLNPKEDEIIEIGAIK-MKGSEVLGTYSTFVKPE-KELSAMITSLTGITED 475 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTL 127 L + + EF F + +AHNA FD GF+ +++ D P IDTL Sbjct: 476 MLSEARPIKEVLPEFTKF--TEGCILVAHNASFDYGFVRNSVKKHFGGDWEMPC--IDTL 531 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++A+ S L+++ KR + H H A D+ + ++V K + Sbjct: 532 ALAKSLFRSKSYSLDNVVKRLK--LGHFDHHRAFEDAKVTAEVLKKFV 577 >gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501] gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501] Length = 1450 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 11/204 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +VFD+ETTGL + D IIE+ AV++ + +F F+ P G S + L Sbjct: 420 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITDE ++ S + F +F ++ +AHNA FD+GF+N R P + + Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 534 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179 IDTL +AR +P R L L K++G+++ H A+ D+ + +++K + Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203 + + + NE + K Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPF 616 >gi|15643342|ref|NP_228386.1| DNA polymerase III PolC [Thermotoga maritima MSB8] gi|6225287|sp|Q9ZHF6|DPO3_THEMA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|4981093|gb|AAD35661.1|AE001732_6 DNA polymerase III, alpha subunit [Thermotoga maritima MSB8] gi|3930535|gb|AAC80438.1| DNA polymerase III [Thermotoga maritima] Length = 1367 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 94/177 (53%), Gaps = 11/177 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGLD + D IIEIGAV+ + + + + P+ R+ S ++ ++ GIT E Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVK-IQGGQIVDEYHTLIKPS-REISRKSSEITGITQE 415 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127 L++K S + EF F +++ +AHNA FD F+ +++ + D P IDTL Sbjct: 416 MLENKRSIEEVLPEFLGFL--EDSIIVAHNANFDYRFLRLWIKKVMGLDWERP--YIDTL 471 Query: 128 SIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++A+ L+S+ ++ G+ H H AL D+ + + V+++ + +I Sbjct: 472 ALAKSLLKLRSYSLDSVVEKLGLGPFRH---HRALDDARVTAQVFLRFVEMMKKIGI 525 >gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1071] gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1679] gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium U0317] gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1071] gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1679] gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium U0317] Length = 1450 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 11/204 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +VFD+ETTGL + D IIE+ AV++ + +F F+ P G S + L Sbjct: 420 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITDE ++ S + F +F ++ +AHNA FD+GF+N R P + + Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 534 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179 IDTL +AR +P R L L K++G+++ H A+ D+ + +++K + Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203 + + + NE + K Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPF 616 >gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039] gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039] Length = 1450 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 11/204 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +VFD+ETTGL + D IIE+ AV++ + +F F+ P G S + L Sbjct: 420 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITDE ++ S + F +F ++ +AHNA FD+GF+N R P + + Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 534 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179 IDTL +AR +P R L L K++G+++ H A+ D+ + +++K + Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203 + + + NE + K Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPF 616 >gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636] gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636] Length = 1450 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 11/204 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +VFD+ETTGL + D IIE+ AV++ + +F F+ P G S + L Sbjct: 420 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 477 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITDE ++ S + F +F ++ +AHNA FD+GF+N R P + + Sbjct: 478 GITDEMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 534 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179 IDTL +AR +P R L L K++G+++ H A+ D+ + +++K + Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 592 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203 + + + NE + K Sbjct: 593 NMLYHDQLNEHIGEGDSYKRARPF 616 >gi|302872252|ref|YP_003840888.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis OB47] gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis OB47] Length = 1402 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG DS+ DRIIEIGAV++ + T R F F+ P G K +L GI + Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITER-FSTFVDPEG-KIPVRISELTGIYQD 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S EF F + +AHNA+FD+GF+ Q + IDTL Sbjct: 448 MVDKAPKLSDAILEFERF--ASGSVLVAHNAQFDIGFLKKAYQECGI--IFDYTYIDTLE 503 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++RR S + LN + + + + H H A D+ ++++I ++ + Sbjct: 504 LSRRLLTDLSSHKLNKVAEFLNVELKHH--HRADSDAETTANIFISLVERLKARGY 557 >gi|218283081|ref|ZP_03489176.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989] gi|218216150|gb|EEC89688.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989] Length = 1446 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 21/244 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +VFD+ETTGL + D IIE G V++ + + R Q+F+ P R L Sbjct: 391 RLEDATFVVFDLETTGLSNTRDEIIEFGGVKIKNREEVGR-LQMFINPK-RTIPAHISNL 448 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 IT + E +F ++ +AHNA FDVGF+NA ++ +D L + Sbjct: 449 THITQNDVDCAKPIEDALDELLEFIG--DSILVAHNATFDVGFMNAACRKTGRDEL-TNP 505 Query: 123 IIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL ++ P R +L S+C+ Y ++ H A D+ +LS V MM +Q Sbjct: 506 VIDTLPLSYAMLPDEQKRFNLGSVCRHYRVSYDGEGAHRADYDADVLSQVMYNMM---NQ 562 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPL---FTRITKEELDE--------HDKTIQ 229 + + + + + +R++P K+ L E H + + Sbjct: 563 LGHDATLDTLMDMEGGCEKYSSKKPYERNRPYHMTVFAKNKDGLKELFELITLSHTQYLV 622 Query: 230 TLGK 233 ++GK Sbjct: 623 SMGK 626 >gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius CECT 5713] Length = 1444 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 8/189 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD ETTGL ++ D++IE+ AV++ + + TF+ F+ P G S + L ITD+ Sbjct: 426 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVID-TFEEFIDP-GHPLSQTTINLTSITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S +F F +F ++ + HNA FDV F+N +R N + + IDTL Sbjct: 484 MVRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMI-QEPWIDTLP 540 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR +P + LN+L K+ I + H H A+ D+ +Y M+ + + Sbjct: 541 LARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAMLKDAEEKQILYHD 598 Query: 188 NEDRFFKEE 196 + ++ E Sbjct: 599 DFNKHIGEN 607 >gi|315038577|ref|YP_004032145.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] gi|312276710|gb|ADQ59350.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] Length = 1435 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 14/211 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + + Sbjct: 411 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTIN 468 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + +F DF+ ++ HN +FDVGF+NA L+R + Sbjct: 469 LTSITDEMVSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEI-TQ 525 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL ++R HP R+ L+SL K+Y +++ H H A D+ + K++ Sbjct: 526 PVVDTLEVSRLLHPEQNRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMYKLLDA--- 580 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 F K NED + + KR +P Sbjct: 581 --FKKKYNEDN-LNNLNGYAAHGEVYKRARP 608 >gi|310779125|ref|YP_003967458.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926] gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926] Length = 1442 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 7/169 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V+D+ET GL+S + IIEIGA++L ++ + + P G+ + +L GITD+ Sbjct: 415 YVVYDLETMGLNSHENEIIEIGAIKLKGTRIVDK-YSQLINP-GKSIPSKIQELTGITDD 472 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD+PS + F +F +A +AHNA+FD+GF+ ++++ +IDTL Sbjct: 473 MVKDEPSIEEVLPGFLEFAG--DATLVAHNARFDIGFLTRDVKKYTNIKDYKPSVIDTLQ 530 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 AR P R L S+ K+ G+ + + H A+ DS + ++ + Sbjct: 531 WARDLLPDLRGYGLKSVTKKLGVALENH--HRAVDDSQATAHMFAIFLE 577 >gi|262046916|ref|ZP_06019876.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] gi|260572898|gb|EEX29458.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US] Length = 1436 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 97/176 (55%), Gaps = 9/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K++ ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + + Sbjct: 412 MTYKDR-EFVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTI 468 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L ITDE + + + +F DF+ ++ HN +FDVGF+NA L+R + Sbjct: 469 NLTSITDEMVGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEI-T 525 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++R HP SR+ L+SL K+Y +++ H H A D+ + K++ Sbjct: 526 QPVVDTLEVSRLLHPEQSRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMFKLL 579 >gi|325957051|ref|YP_004292463.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC] gi|325333616|gb|ADZ07524.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC] gi|327183774|gb|AEA32221.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1118] Length = 1435 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 14/211 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + + Sbjct: 411 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTIN 468 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + +F DF+ ++ HN +FDVGF+NA L+R + Sbjct: 469 LTSITDEMVSAADDEDVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLSEI-TQ 525 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL ++R HP R+ L+SL K+Y +++ H H A D+ + K++ Sbjct: 526 PVVDTLEVSRLLHPEQNRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMYKLLDA--- 580 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 F K NED + + KR +P Sbjct: 581 --FKKKYNEDN-LNNLNGYAAHGEVYKRARP 608 >gi|226227286|ref|YP_002761392.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27] gi|226090477|dbj|BAH38922.1| DNA polymerase III epsilon subunit [Gemmatimonas aurantiaca T-27] Length = 214 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 9/219 (4%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + V D+ETTG + DRI EI V + + + + P R P L Sbjct: 3 DLPFAVVDVETTGTRAAGGDRITEIAIV-QVQGGQVGEVYSQLVNPE-RPIPPYITSLTH 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT + ++D+P+F I S D + + ++AHNA FD F++ E++R + L + Sbjct: 61 ITWDMVRDQPTFREITSNVLDRL--RGSIFVAHNAPFDWRFVSEEVRRGSGQELS-GPRL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 T+ AR P SR L+ + + +GI I+ ++H A D+ + +M+ S+ Sbjct: 118 CTVRFARAALPQLSRRSLDHVTRYFGIEIA--ARHRAAGDALATAHALCRMLNIASEHGV 175 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222 T F T P + +R + +TK+++ Sbjct: 176 ESWTALQAFVDGPVGTRPRTASDRRRRAFPLPVTKDDIA 214 >gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1444 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 8/189 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD ETTGL ++ D++IE+ AV++ + + TF+ F+ P G S + L ITD+ Sbjct: 426 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVID-TFEEFIDP-GHPLSQTTINLTSITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S +F F +F ++ + HNA FDV F+N +R N + + IDTL Sbjct: 484 MVRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMI-QEPWIDTLP 540 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR +P + LN+L K+ I + H H A+ D+ +Y M+ + + Sbjct: 541 LARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAMLKDAEEKQILYHD 598 Query: 188 NEDRFFKEE 196 + ++ E Sbjct: 599 DFNKHVGEN 607 >gi|229090605|ref|ZP_04221839.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-42] gi|228692748|gb|EEL46473.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-42] Length = 934 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118] gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118] Length = 1444 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 8/189 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD ETTGL ++ D++IE+ AV++ + + TF+ F+ P G S + L ITD+ Sbjct: 426 YVIFDTETTGLSAQYDKVIELAAVKMEKGNVID-TFEEFIDP-GHPLSQTTINLTSITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S +F F +F ++ + HNA FDV F+N +R N + + IDTL Sbjct: 484 MVRGSKSEEEVFRLFKEFC--KDCIIVGHNATFDVDFMNTGYERHNMEMI-QEPWIDTLP 540 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR +P + LN+L K+ I + H H A+ D+ +Y M+ + + Sbjct: 541 LARYLYPEMKGFRLNTLAKKLNIKLEHH--HRAIYDAEATGFIYYAMLKDAEEKQILYHD 598 Query: 188 NEDRFFKEE 196 + ++ E Sbjct: 599 DFNKHVGEN 607 >gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor hydrothermalis 108] gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor hydrothermalis 108] Length = 1402 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG DS+ DRIIEIGAV++ + T + F F+ P G K +L GI + Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITEK-FSTFVDPEG-KIPVRISELTGIYQD 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S EF F + +AHNA+FD+GF+ Q + IDTL Sbjct: 448 MVDKAPKLSDAILEFEKF--ASGSVLVAHNAQFDIGFLKKAYQECGI--IFDYTYIDTLE 503 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++RR S + LN + + + + H H A D+ + ++I ++ + Sbjct: 504 LSRRLLTDLSSHKLNKVAEFLNVELKHH--HRADSDAETTAGIFISLVERLKARGY 557 >gi|114321202|ref|YP_742885.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227596|gb|ABI57395.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] Length = 714 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 95/200 (47%), Gaps = 11/200 (5%) Query: 3 RKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60 R + +VFD E TGL+ + D II I V +++ T TF + P GR P ++ Sbjct: 503 RLADLSFVVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINP-GRPIPPGSV 561 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + HGITD+ ++DKP + +F F +A +AHNA FD+ FI+ + + +P Sbjct: 562 RFHGITDDDVQDKPPIEVVLPQFKSFVG--DAVLVAHNAAFDMKFISMKEREAGVRFDNP 619 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---MVG 177 LS + L++LC RYGI I+ R H AL D+ +++ +++ + Sbjct: 620 VLDTLLLSALLD-GDEEDHSLDALCDRYGIAITGR--HTALGDTLATAELLVRIIERLEA 676 Query: 178 GSQINFGFKTNEDRFFKEEK 197 FG R E + Sbjct: 677 QGYQTFGEVMKASRMAAELR 696 >gi|300117431|ref|ZP_07055221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus SJ1] gi|298725266|gb|EFI65918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus SJ1] Length = 934 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|196039095|ref|ZP_03106402.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus NVH0597-99] gi|196030240|gb|EDX68840.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus NVH0597-99] Length = 934 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 37/257 (14%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--------- 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFLNEIEKLPLV 176 Query: 176 ----------------VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITK 218 +N K + EE + NI+L KR+ L + I Sbjct: 177 TLQSLYELSDVFQSDIADVLSVNILKKMMHGKKAAEEYEVYRNIALRKRNYSLNLSEICS 236 Query: 219 EELDEH-DKTIQTLGKN 234 + D KTI L N Sbjct: 237 SKFDAFLHKTIDKLALN 253 >gi|237737108|ref|ZP_04567589.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817] gi|229420970|gb|EEO36017.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817] Length = 1450 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 8/169 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ET GL+S IIEIGAV+L +R F + P + + +L IT E Sbjct: 424 FIVFDLETMGLNSHEHEIIEIGAVKLRGNRIVDR-FSQLVNPQ-KPIPKKIQELTNITQE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P+ + +F +F +A +AHNA FD+GFI +++R+ P+ IIDTL Sbjct: 482 MVDNMPTIEEVLPKFMEFVG--DATMVAHNAAFDMGFIRRDVKRLLGYDYTPA-IIDTLQ 538 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +AR +P + L +L K G+++ S H A+ DS ++++I M Sbjct: 539 MARDLYPDLKGYGLKNLNKVLGLSLE--SHHRAVDDSQATANMFIIFME 585 >gi|126462986|ref|YP_001044100.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] gi|126104650|gb|ABN77328.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] Length = 695 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 7/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61 R + +VFD ETTGL D I++I AV +++ + + P+ R P + + Sbjct: 490 RLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPH-RPIPPSSTE 548 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGITD + + P + F F + A +AHNA FD+ F+ I + +P Sbjct: 549 VHGITDAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNAPFDMEFLRRAEPLIGRRFDNP- 605 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+DT+ ++ S + L++L R GITI ++H A+ D+ +D ++K++ Sbjct: 606 -ILDTVLLSAVLFGQSDVHSLDALTHRIGITIPEEARHTAIGDTVATADAFLKLL 659 >gi|144897909|emb|CAM74773.1| DNA polymerase III, epsilon subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 677 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 96/172 (55%), Gaps = 10/172 (5%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61 + IVFD ETTGL + D+I++IGAV +++ +F + P GR PE++K Sbjct: 479 LRSLTFIVFDTETTGLQPSQGDQIVQIGAVRIVNGRILSGESFNRIVNP-GRVIPPESIK 537 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HGITD+ +KDKP + +F F +A +AHNA FD+ F+ ++ +P Sbjct: 538 FHGITDDMVKDKPPLGVVLPQFKAF--AADAVLVAHNAAFDLKFLRMNERQFGLKFDNP- 594 Query: 122 RIIDTLSIA-RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++DT+ ++ P + + L+++C R GI+I+ R H AL D+ + + V + Sbjct: 595 -VLDTMMLSNYLDGPETGHSLDAICDRLGISITDR--HTALGDAIVTAAVLL 643 >gi|118477094|ref|YP_894245.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al Hakam] gi|196046614|ref|ZP_03113838.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB108] gi|225863505|ref|YP_002748883.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB102] gi|229183836|ref|ZP_04311053.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC 6E1] gi|118416319|gb|ABK84738.1| ATP-dependent DNA helicase [Bacillus thuringiensis str. Al Hakam] gi|196022547|gb|EDX61230.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB108] gi|225789838|gb|ACO30055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus 03BB102] gi|228599685|gb|EEK57288.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC 6E1] Length = 934 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|228926672|ref|ZP_04089741.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228833048|gb|EEM78616.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 934 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|229195843|ref|ZP_04322602.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1293] gi|228587616|gb|EEK45675.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1293] Length = 934 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|228945241|ref|ZP_04107597.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814476|gb|EEM60741.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 934 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|303258008|ref|ZP_07344017.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] gi|330999422|ref|ZP_08323136.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] gi|302859351|gb|EFL82433.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium 1_1_47] gi|329574848|gb|EGG56407.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] Length = 196 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 66/175 (37%), Positives = 95/175 (54%), Gaps = 5/175 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R N+ R+I D ETTG+ DRI+E+ A+E+ D +F F+ P RK ++ Sbjct: 18 RANRKRRIFLDTETTGMSQATDRIVEVCAIEVDDDFNEIDSFHAFINPQ-RKVPWFVTRI 76 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--P 120 HG+ +EFL DKP FS I + F + +E AHN FD G +NAE R L+ Sbjct: 77 HGLNNEFLDDKPIFSDIGRDLLLFL--EGSELWAHNMSFDAGMLNAEFARNRLPTLEKVD 134 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R+ TL +AR P +N L++L R+ I S R HGA++D+ LL VY ++ Sbjct: 135 CRLNCTLQLARSTFPGQKNSLDALLDRFAIDRSERRLHGAMIDTRLLVKVYQNLV 189 >gi|329667117|gb|AEB93065.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026] Length = 1432 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 13/207 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +N+ ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + Sbjct: 408 MDYRNR-EYVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDEFINPH-HPLSDTTI 464 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L ITDE + + +F +F+ ++ HN +FDVGF+NA L+R + + Sbjct: 465 NLTSITDEMVGVADDEKDVIKKFKEFYGDR--PLCGHNVQFDVGFVNAALRRAGLEEI-T 521 Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM---- 175 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ Sbjct: 522 QPVVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHH--HRANQDAEATGYLMFKLLDAFN 579 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPN 202 + + G + ++ + K+ P+ Sbjct: 580 ERFHEADLGKMNDYAKYGQVYKRAKPS 606 >gi|206974778|ref|ZP_03235693.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus H3081.97] gi|217959123|ref|YP_002337671.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus AH187] gi|222095271|ref|YP_002529331.1| bifunctional ATP-dependent DNA helicase/DNA polymerase iii subunit epsilon [Bacillus cereus Q1] gi|206746797|gb|EDZ58189.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus H3081.97] gi|217066733|gb|ACJ80983.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH187] gi|221239329|gb|ACM12039.1| ATP-dependent DNA helicase [Bacillus cereus Q1] Length = 934 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|30261638|ref|NP_844015.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames] gi|47526838|ref|YP_018187.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames Ancestor'] gi|49184469|ref|YP_027721.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne] gi|165869397|ref|ZP_02214056.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0488] gi|167639095|ref|ZP_02397368.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0193] gi|170706543|ref|ZP_02897003.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0389] gi|177650486|ref|ZP_02933453.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0174] gi|190568647|ref|ZP_03021552.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis Tsiankovskii-I] gi|227815611|ref|YP_002815620.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. CDC 684] gi|229602233|ref|YP_002866045.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0248] gi|254734478|ref|ZP_05192190.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Western North America USA6153] gi|254755128|ref|ZP_05207162.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum] gi|254759665|ref|ZP_05211689.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus anthracis str. Australia 94] gi|30255866|gb|AAP25501.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. Ames] gi|47501986|gb|AAT30662.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. 'Ames Ancestor'] gi|49178396|gb|AAT53772.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus anthracis str. Sterne] gi|164714837|gb|EDR20355.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0488] gi|167512885|gb|EDR88258.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0193] gi|170128641|gb|EDS97508.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0389] gi|172083630|gb|EDT68690.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0174] gi|190560247|gb|EDV14227.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis Tsiankovskii-I] gi|227006832|gb|ACP16575.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. CDC 684] gi|229266641|gb|ACQ48278.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus anthracis str. A0248] Length = 934 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|260365523|ref|ZP_05778060.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030] gi|260877586|ref|ZP_05889941.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|260895401|ref|ZP_05903897.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|260901674|ref|ZP_05910069.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|308085274|gb|EFO34969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|308090931|gb|EFO40626.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|308108950|gb|EFO46490.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|308114429|gb|EFO51969.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus K5030] Length = 204 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 11/179 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + N +V D ETTGL DR IEIGAV+L+D + +FQ + P G + S Sbjct: 1 MPQANS--VVVLDFETTGLSPTLGDRAIEIGAVKLVDG-EVVDSFQQLMNP-GFRVSSFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L+ PS + + F +F + +N IAHNA FD F++AEL+RIN Sbjct: 57 ENYTGITNNMLRTAPSCEEVMASFSEFIDGEN--LIAHNASFDKRFLDAELERINCG--Y 112 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +L +ARR + L L + I H AL D+ + + +++ M+ G Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDG-VFHRALADAQMTAKLWLLMVEG 170 >gi|257091883|ref|YP_003165524.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044407|gb|ACV33595.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 735 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 12/204 (5%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61 + + VFD ETTG++ D II+IGAV +++ N F + P R PE ++ Sbjct: 540 LSDLTYTVFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPE-RFIRPEGIR 598 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI+D+ ++ +P+ + DF N + +AHNA FD+ F+ + +R P Sbjct: 599 IHGISDDMVRGQPNIEVVLPALHDFCN--DTVLVAHNAAFDMRFLQLKEERTGVAFSQP- 655 Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL ++ HP + L+S+ +R GI I R H AL D+ ++V++KM+ +Q Sbjct: 656 -VLDTLLLSGVLHPNQESHQLDSIAERLGIGIEDR--HNALGDACATAEVFLKMLPLLAQ 712 Query: 181 INFGFKTNEDRFFKEEKKTVPNIS 204 + G T EK + Sbjct: 713 M--GITTLRQALEASEKTYFARVK 734 >gi|58337539|ref|YP_194124.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM] gi|227904180|ref|ZP_04021985.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796] gi|58254856|gb|AAV43093.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM] gi|227868199|gb|EEJ75620.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796] Length = 1437 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 8/175 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + R F F+ P+ S + + Sbjct: 413 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIER-FDKFINPH-HPLSEQTIN 470 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + + +F DF+ ++ HN +FDVGF+NA L+R + Sbjct: 471 LTSITDEMVSAADDEAIVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRNGFSEI-TQ 527 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++R HP R+ L+SL K+Y +++ H H A D+ + K++ Sbjct: 528 PVVDTLEVSRLLHPEQNRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMYKLL 580 >gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1] gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1] gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ST-III] gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Lactobacillus plantarum WCFS1] gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1] gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1437 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 57/199 (28%), Positives = 101/199 (50%), Gaps = 11/199 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD ETTGL + DR+IE+ AV+++ + ++ F+ F+ P G S L ITD+ Sbjct: 422 YVIFDTETTGLSAIYDRVIELSAVKMVKGNVVDQ-FEEFIDP-GFHLSETTTNLTSITDD 479 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S +F F +F+ +A + HN FD+GF+N R + P+ + IIDTL+ Sbjct: 480 MVRGSKSEEEVFKLFREFYG--DAIVVGHNVTFDIGFMNTGYARHHMGPI-TNPIIDTLT 536 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLS---DVYIKMMVGGSQINFG 184 +AR +P+ R LN+L K++ + + H H A+ D+ +++K Q+ F Sbjct: 537 LARWLYPNLRGYRLNTLAKKFNVNLEHH--HRAIYDAETTGHLNHLFLKDAEDRYQVQFH 594 Query: 185 FKTNEDRFFKEEKKTVPNI 203 + N+ + Sbjct: 595 DQLNDHMNENAAYRHARPF 613 >gi|81428867|ref|YP_395867.1| DNA polymerase III PolC [Lactobacillus sakei subsp. sakei 23K] gi|123564054|sp|Q38W73|DPO3_LACSS RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|78610509|emb|CAI55560.1| DNA-directed DNA polymerase III, polC-type [Lactobacillus sakei subsp. sakei 23K] Length = 1446 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 17/221 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL + D IIE+ AV++ D + +F F+ P R S +L IT+E Sbjct: 425 YVIFDVETTGLSAVYDSIIELAAVKMRDG-EVVASFDEFIDPE-RPLSAFTTQLTSITNE 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + + F +F +A HN FD+GF+NA +R + D +D + +IDTL Sbjct: 483 MVHGAKKEAEVLAMFKEF--TGDAVLAGHNVSFDMGFLNAGYERNDIDLID-NPVIDTLE 539 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---------MVGG 178 ++R HP + + L+SL KRY I + H H A D+ + K+ MV Sbjct: 540 LSRMLHPEYKNHKLDSLTKRYKINLEHH--HRANADAESTGYLLYKLEKEAAENYDMVNV 597 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 +Q+N E V K LF ++ Sbjct: 598 NQLNDRVGVGEFYKQARPAHAVLMAQTQAGLKNLFKLVSAS 638 >gi|324325658|gb|ADY20918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar finitimus YBT-020] Length = 934 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|237734614|ref|ZP_04565095.1| DNA-directed DNA polymerase [Mollicutes bacterium D7] gi|229382434|gb|EEO32525.1| DNA-directed DNA polymerase [Coprobacillus sp. D7] Length = 1440 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 6/173 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL +D I E GAV++ + +R Q+F+ P G+ S L IT++ Sbjct: 403 YVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-LQMFVNP-GKSISSRITNLTSITND 460 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++P+ ++ +FF+ + +AHNA FD+GF+N L+R N P + IID+L+ Sbjct: 461 MVRNEPTIDALLPRIIEFFD--DCILVAHNANFDIGFLNENLRR-NNMPEITNPIIDSLA 517 Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +AR P L ++C+ Y + H A D+ +L DV+ M+ Q Sbjct: 518 LARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMMLHQIMQ 570 >gi|259415529|ref|ZP_05739450.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] gi|259348759|gb|EEW60521.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] Length = 473 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 7/176 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60 + + + +VFD ETTGL + D I++I A +++ F ++ P GR P + Sbjct: 263 TKLSDLCFVVFDTETTGLSVETDAIVQIAAQRVMNGRLVKGEVFDAYVNP-GRAIPPAST 321 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HG+ D + D PS + F F ++A +AHNA FD+G + + + P Sbjct: 322 RIHGVRDADVADAPSIEQVIPAFHHF--SKDAVLVAHNAPFDIGLLRQQERATGIKWDHP 379 Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++ S + L++LC+R I I + +H AL D+ ++ +K++ Sbjct: 380 --VLDTVLLSAVVFGISQEHSLDALCQRLAIEIPAQHRHTALGDAKATAEALVKLL 433 >gi|167756906|ref|ZP_02429033.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402] gi|167703081|gb|EDS17660.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402] Length = 1445 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 6/173 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL +D I E GAV++ + +R Q+F+ P G+ S L IT++ Sbjct: 408 YVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-LQMFVNP-GKSISSRITNLTSITND 465 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++P+ ++ +FF+ + +AHNA FD+GF+N L+R N P + IID+L+ Sbjct: 466 MVRNEPTIDALLPRIIEFFD--DCILVAHNANFDIGFLNENLRR-NNMPEITNPIIDSLA 522 Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +AR P L ++C+ Y + H A D+ +L DV+ M+ Q Sbjct: 523 LARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMMLHQIMQ 575 >gi|28900648|ref|NP_800303.1| hypothetical protein VPA0793 [Vibrio parahaemolyticus RIMD 2210633] gi|153836411|ref|ZP_01989078.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810] gi|28809028|dbj|BAC62136.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750313|gb|EDM61058.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus AQ3810] Length = 214 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 11/179 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + N +V D ETTGL DR IEIGAV+L+D + +FQ + P G + S Sbjct: 11 MPQANS--VVVLDFETTGLSPTLGDRAIEIGAVKLVDG-EVVDSFQQLMNP-GFRVSSFI 66 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L+ PS + + F +F + +N IAHNA FD F++AEL+RIN Sbjct: 67 ENYTGITNNMLRTAPSCEEVMASFSEFIDGEN--LIAHNASFDKRFLDAELERINCG--Y 122 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +L +ARR + L L + I H AL D+ + + +++ M+ G Sbjct: 123 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDG-VFHRALADAQMTAKLWLLMVEG 180 >gi|270290316|ref|ZP_06196541.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4] gi|270281097|gb|EFA26930.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4] Length = 1436 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 104/184 (56%), Gaps = 9/184 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++FD+ETTGL + D++IE+ AV++ + + + F+ F+ P G S + L IT+ Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDE-FEEFIDP-GFPLSETTINLTSITN 476 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S +F++F +F+ ++A + HN FD+GF+N R + + + IIDTL Sbjct: 477 EMVRGSLSEKEVFTKFREFY--EDAIIVGHNVTFDIGFMNTGYLRHGMEEI-KNPIIDTL 533 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++AR +P+ + LN+L K++ + + H H A+ D+ + + + ++ +G + Sbjct: 534 TLARFLYPTLKGYRLNTLAKKFNVALEHH--HRAIYDAETTGHL-CYLFLKDAEERYGIE 590 Query: 187 TNED 190 ++ Sbjct: 591 YHDQ 594 >gi|255523926|ref|ZP_05390889.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7] gi|296185167|ref|ZP_06853577.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium carboxidivorans P7] gi|255512357|gb|EET88634.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7] gi|296050001|gb|EFG89425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium carboxidivorans P7] Length = 1449 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 9/207 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG ++I EIG +++ D ++ F F+ P + P +++ ITD+ Sbjct: 426 YCVLDLETTGFSPVIEKITEIGIMKIKDGKVIDK-FSCFVNPK-KPIPPRVVEVTNITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D + +F + DF +++ +AHNA+FD+GF+ + + D +DTL+ Sbjct: 484 MVRDAETIEQVFPKMLDFI--KDSVLVAHNAEFDIGFLKHNARVLGYDF--DFTYLDTLT 539 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P + L + K GI + H AL D ++ M+ + Sbjct: 540 LAQELFPDFKTYKLGRIAKNLGIKVE--VAHRALDDVDTTVKIFNVMLEKLKERGAETLQ 597 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFT 214 + D + +E LK + Sbjct: 598 DVDVYGSDEAAKKEEYKKLKTYHAIIL 624 >gi|304384865|ref|ZP_07367211.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284] gi|304329059|gb|EFL96279.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284] Length = 1436 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 104/184 (56%), Gaps = 9/184 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++FD+ETTGL + D++IE+ AV++ + + + F+ F+ P G S + L IT+ Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDE-FEEFIDP-GFPLSETTINLTSITN 476 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S +F++F +F+ ++A + HN FD+GF+N R + + + IIDTL Sbjct: 477 EMVRGSLSEKEVFTKFREFY--EDAIIVGHNVTFDIGFMNTGYLRHGMEEI-KNPIIDTL 533 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++AR +P+ + LN+L K++ + + H H A+ D+ + + + ++ +G + Sbjct: 534 TLARFLYPTLKGYRLNTLAKKFNVALEHH--HRAIYDAETTGHL-CYLFLKDAEERYGIE 590 Query: 187 TNED 190 ++ Sbjct: 591 YHDQ 594 >gi|312876753|ref|ZP_07736732.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311796484|gb|EFR12834.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 1402 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG DS+ DRIIEIGAV++ + T+R F F+ P G K +L GI + Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITDR-FSTFVDPEG-KIPVRISELTGIYQD 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P EF F + +AHNA+FD+GF+ Q + IDTL Sbjct: 448 MVDKAPKLIDAILEFERF--ASGSVLVAHNAQFDIGFLKKAYQECGI--IFDYTYIDTLE 503 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++RR S LN + + + + H H A D+ + ++I ++ + Sbjct: 504 LSRRLLTDLSSYKLNKVAEFLNVELRHH--HRADSDAETTAGIFISLLERLKARGY 557 >gi|256843343|ref|ZP_05548831.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|293381212|ref|ZP_06627220.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus crispatus 214-1] gi|256614763|gb|EEU19964.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|290922252|gb|EFD99246.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus crispatus 214-1] Length = 1436 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 8/175 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + + Sbjct: 412 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTIN 469 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + + +F DF+ ++ HN +FDVGF+NA L+R + Sbjct: 470 LTSITDEMVGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEI-TQ 526 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++R HP SR+ L+SL K+Y +++ H H A D+ + K++ Sbjct: 527 PVVDTLEVSRLLHPEQSRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMFKLL 579 >gi|295693139|ref|YP_003601749.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1] gi|295031245|emb|CBL50724.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1] Length = 1436 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 8/175 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + + Sbjct: 412 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTIN 469 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + + +F DF+ ++ HN +FDVGF+NA L+R + Sbjct: 470 LTSITDEMVGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEI-TQ 526 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++R HP SR+ L+SL K+Y +++ H H A D+ + K++ Sbjct: 527 PVVDTLEVSRLLHPEQSRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMFKLL 579 >gi|90023051|ref|YP_528878.1| DNA-directed DNA polymerase [Saccharophagus degradans 2-40] gi|89952651|gb|ABD82666.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40] Length = 215 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 60/192 (31%), Positives = 88/192 (45%), Gaps = 10/192 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV L + +R FQ + P G + S GI + Sbjct: 16 VVLDFETTGLSPDMGDRAIEIGAVRLHNGEIVDR-FQALMNP-GFQISGFIASYTGIDNS 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F ++ N +AHNA FD F++AEL RI + +L Sbjct: 74 MLAKAPPCDEVMDAFANYIGNDN--LVAHNASFDKRFLDAELYRIGRS--YSGDFTCSLL 129 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ARR P+ + L +L K + S + H AL DS + + V++ M++ Q +G Sbjct: 130 AARRLFPNAENHKLGTLVKHTKLQ-SDGAFHRALYDSEMTAKVWMVMLMQLQQ-AYGLNH 187 Query: 188 NEDRFFKEEKKT 199 ++ KT Sbjct: 188 VPFSLIQKITKT 199 >gi|42780745|ref|NP_977992.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987] gi|42736665|gb|AAS40600.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cereus ATCC 10987] Length = 934 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 [Actinosynnema mirum DSM 43827] gi|255919819|gb|ACU35330.1| DNA polymerase III, epsilon subunit [Actinosynnema mirum DSM 43827] Length = 578 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 17/212 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +VFD+ETTG + D I EIGAV++ F + P R P+ + Sbjct: 24 TPLRETTFVVFDLETTGPRAAEDGITEIGAVKVRGGRVIGE-FGTLVDPE-RGIPPQIVA 81 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT + P +S+ F +F + A +AHN+ FDVGF+ A +R P Sbjct: 82 LTGITQNMVTGAPVLASVLPAFLEF--AEGAVLVAHNSGFDVGFMKAACERHGYAWPKP- 138 Query: 122 RIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ T+ +ARR + + L++L +G+ + H AL+D+ +V +++ Sbjct: 139 PVVCTVKLARRVLSREEAPSCKLSALSALFGVPEA--PNHRALVDARATVEVLHRLLERV 196 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 + +E +P++S +R K Sbjct: 197 GSVGVH-------SLEELLAYLPDVSPQQRRK 221 >gi|315497459|ref|YP_004086263.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB 48] gi|315415471|gb|ADU12112.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB 48] Length = 717 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 10/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG S N+R+ EIGAV++ + + T+Q + P R+ P +L GI++ Sbjct: 545 YTVVDIETTGGQSANERVTEIGAVKIRNGEIID-TWQSLINPE-RRIPPFITELTGISNA 602 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F+ I +F F + ++AHN FD GF++AE +R+ + P + T++ Sbjct: 603 MVRDAPRFADIADDFDAFL--KGTVFVAHNVNFDYGFLSAEYRRLERPFRYP--KMCTVA 658 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 RR P + L L + +GI + ++ H AL D+ +++ +K++ Sbjct: 659 SMRRHFPGLAAYGLGPLSREFGIEL--KNHHRALSDAMAAAEL-LKLI 703 >gi|126729411|ref|ZP_01745225.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Sagittula stellata E-37] gi|126710401|gb|EBA09453.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Sagittula stellata E-37] Length = 468 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 10/204 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60 + ++ V D ETTGL D I++IGAV +++ + P GR P + Sbjct: 269 MPLGRLTYTVLDTETTGLLPHKDEIVQIGAVRIVNGRIVPGERMDQLVNP-GRPIPPASS 327 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+HG+TD + P + F F +++ +AHNA FD+ F++ R+ + P Sbjct: 328 KVHGVTDAMVAGAPGIAEAGRRFHTF--ARDSVIVAHNAPFDMAFLHRHKTRMGVEWTHP 385 Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I+DT+ ++ +S+ + L++LC R +TI +H AL D+ ++V+ +M+ Sbjct: 386 --ILDTVLLSAVLFGASQTHTLDALCDRLAVTIPPNLRHTALGDAQATAEVFGRMLPMLE 443 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203 G T ED E K+ I Sbjct: 444 --ARGMTTLED-VLAETKRHGRLI 464 >gi|326803581|ref|YP_004321399.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus urinae ACS-120-V-Col10a] gi|326651581|gb|AEA01764.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus urinae ACS-120-V-Col10a] Length = 1437 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 11/199 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL + + IIEIGAV++ + F FL P G S +L GITD Sbjct: 421 YVIFDVETTGLSAVYNTIIEIGAVKMHKGNVVGE-FSEFLNP-GHHLSSFTTELTGITDS 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + +F DF Q +AHNA FDVGFI+A QR ++ + +IDTL Sbjct: 479 MVANARPEPEVMQDFLDFC--QGTILVAHNASFDVGFIDAAYQRNGLPTIE-NPVIDTLE 535 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSH---LLSDVYIKMMVGGSQINFG 184 +AR +P ++ LN+L K + +++ H H A+ D+ L+ +++K + + Sbjct: 536 LARYLYPHLKSFRLNTLSKHFNVSLEHH--HRAIYDATSTGALAWIFVKEAKESHDMVYH 593 Query: 185 FKTNEDRFFKEEKKTVPNI 203 + N D + K Sbjct: 594 DQLNRDIGQGDAYKKGRPF 612 >gi|91225444|ref|ZP_01260566.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01] gi|91189807|gb|EAS76080.1| hypothetical protein V12G01_08955 [Vibrio alginolyticus 12G01] Length = 204 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 13/204 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + N +V D ETTGL DR IEIGAV+L++ + +FQ + P G + S Sbjct: 1 MPQANS--VVVLDFETTGLSPTLGDRAIEIGAVKLVNG-EVVDSFQQLMNP-GFRVSSFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L+ PS + + F +F +N IAHNA FD F++AEL+RIN Sbjct: 57 ENYTGITNNMLRSAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCG--Y 112 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L +ARR + L L + I H AL D+ + + +++ M+ G Sbjct: 113 SGEFACSLLVARRLIQEAPSHKLGELVRYKNIDNDG-VFHRALADAQMTAKLWLLMVEGI 171 Query: 179 SQINFGFKTNEDRFFKEEKKTVPN 202 N G + + + KT Sbjct: 172 E--NSGVEKPSFQLMQTVSKTAKG 193 >gi|301053179|ref|YP_003791390.1| ATP-dependent DNA helicase [Bacillus anthracis CI] gi|300375348|gb|ADK04252.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str. CI] Length = 934 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|116492651|ref|YP_804386.1| DNA polymerase III PolC [Pediococcus pentosaceus ATCC 25745] gi|122265885|sp|Q03FS8|DPO3_PEDPA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116102801|gb|ABJ67944.1| DNA polymerase III catalytic subunit, PolC type [Pediococcus pentosaceus ATCC 25745] Length = 1437 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 106/184 (57%), Gaps = 9/184 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++FD+ETTGL + D++IE+ AV++ + + ++ F+ F+ P G S + L ITD Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDQ-FEEFIDP-GFPLSETTINLTSITD 476 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ S +F++F +F+ ++A + HN FD+GF+N R + + + IIDTL Sbjct: 477 EMVRGSMSEKEVFTKFREFY--EDAIIVGHNVTFDIGFMNTGYLRHGMEEI-KNPIIDTL 533 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++AR +P+ + LN+L K++G+ + H H A+ DS + + + ++ +G + Sbjct: 534 TLARFLYPTLKGYRLNTLAKKFGVALEHH--HRAIYDSETTGHL-CYLFLKDAEERYGIE 590 Query: 187 TNED 190 ++ Sbjct: 591 YHDQ 594 >gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM 14863] gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM 14863] Length = 1475 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 12/183 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG D IIE+GAV + +FQ F+ P + PE KL IT + Sbjct: 454 FVVLDIETTGFSPIGDDIIELGAVRCR-GGEIVDSFQSFVRPT-KPVPPEVQKLTNITPD 511 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P + F+ F +A +AHNA+FD F+ Q+ + + ++DTL+ Sbjct: 512 MLEGAPEAAEALRAFFQFVG--DAIVVAHNAQFDYSFLRYHRQKYLGEEFA-NPVLDTLT 568 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P R + L +L K + + H A D+ + V +K++ G +T Sbjct: 569 LARAVLPHMRSHSLAALTKELQVPLVDH--HRADADAKTAAMVLMKLLERAE----GVET 622 Query: 188 NED 190 D Sbjct: 623 VAD 625 >gi|229121184|ref|ZP_04250421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 95/8201] gi|228662303|gb|EEL17906.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 95/8201] Length = 934 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|226312093|ref|YP_002771987.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599] gi|226095041|dbj|BAH43483.1| probable ATP-dependent helicase [Brevibacillus brevis NBRC 100599] Length = 967 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D ETTG + D II+IGAV +D + +F + P G+ P +L GIT Sbjct: 3 RLLVVDFETTGSHPRQGDSIIQIGAV-AIDDGQITESFSTLIHP-GQDIPPFITQLTGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + D PS +F +F + + ++AHNA FD+ F+ L D ++DT Sbjct: 61 NEMVADAPSLEEVFPDFLRLLDGR--AFVAHNASFDLQFLQEALLSQGYYAFD-GYVLDT 117 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++R P L L + I H + H A D+ + +++ ++ Sbjct: 118 VELSRVLLPMQNSYRLGELASE--LEIEHDNPHQADSDALATAQLFLHLL 165 >gi|227878821|ref|ZP_03996728.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|227861569|gb|EEJ69181.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] Length = 1436 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + + L ITDE Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTINLTSITDE 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + +F DF+ ++ HN +FDVGF+NA L+R + ++DTL Sbjct: 477 MVGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEI-TQPVVDTLE 533 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R HP SR+ L+SL K+Y +++ H H A D+ + K++ Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMFKLL 579 >gi|52143806|ref|YP_083022.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus E33L] gi|51977275|gb|AAU18825.1| ATP-dependent DNA helicase [Bacillus cereus E33L] Length = 934 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|228984721|ref|ZP_04144893.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774919|gb|EEM23313.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 934 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|65318908|ref|ZP_00391867.1| COG1199: Rad3-related DNA helicases [Bacillus anthracis str. A2012] Length = 934 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ E ++ + +D Sbjct: 62 DESMVKQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEEXRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|49477263|ref|YP_035758.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196033564|ref|ZP_03100976.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus W] gi|218902753|ref|YP_002450587.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH820] gi|49328819|gb|AAT59465.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195993998|gb|EDX57954.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus W] gi|218538657|gb|ACK91055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH820] Length = 934 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|256849838|ref|ZP_05555269.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|256713327|gb|EEU28317.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] Length = 1436 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + + L ITDE Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTINLTSITDE 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + +F DF+ ++ HN +FDVGF+NA L+R + ++DTL Sbjct: 477 MVGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEI-TQPVVDTLE 533 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R HP SR+ L+SL K+Y +++ H H A D+ + K++ Sbjct: 534 VSRLLHPEQSRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMFKLL 579 >gi|153954051|ref|YP_001394816.1| DNA polymerase III PolC [Clostridium kluyveri DSM 555] gi|219854664|ref|YP_002471786.1| hypothetical protein CKR_1321 [Clostridium kluyveri NBRC 12016] gi|146346932|gb|EDK33468.1| PolC [Clostridium kluyveri DSM 555] gi|219568388|dbj|BAH06372.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1439 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 12/180 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTG ND IIEIGA+++ + + F F+ P R +L GITDE Sbjct: 426 FVIFDIETTGFSMTNDNIIEIGAIKIKEGKVVGK-FSEFVNPE-RPIPLTITQLTGITDE 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ S I +F +F + N+ +AHNA FDVGFI +N +P ++DT+ Sbjct: 484 MVQNCESIKYILPKFMEFID--NSVVVAHNANFDVGFIKKNCMELNLKFKNP--VMDTIP 539 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQINFG 184 + + P R LN + K I++ + H A+ D+ ++ + KM+ + ++ G Sbjct: 540 LCKFLFPELKRFKLNVVAKHLDISLENH--HRAVDDAGATCEILLRCFKMLKEKNILSLG 597 >gi|56696683|ref|YP_167044.1| DNA polymerase III epsilon subunit family exonuclease [Ruegeria pomeroyi DSS-3] gi|56678420|gb|AAV95086.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruegeria pomeroyi DSS-3] Length = 470 Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 7/169 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 VFD ETTGL D I++IGAV ++ + P GR P + ++HG++D Sbjct: 278 FAVFDTETTGLLPHKDEIVQIGAVRVVKGRIVPGERIDQLVDP-GRPIPPASTRVHGVSD 336 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P + +F F ++A +AHNA FD+ F+ R D P I+DT+ Sbjct: 337 AMVAGAPDIVAAARQFHQF--ARDAVIVAHNAPFDIAFLRRHGPRCGLDWDHP--ILDTV 392 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ +S + L++LC R G+TI +H AL D+ ++V +M+ Sbjct: 393 LLSAVLFGASETHTLDALCDRLGVTIPAPLRHTALGDAQATAEVLCRML 441 >gi|254229191|ref|ZP_04922610.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp. Ex25] gi|262395541|ref|YP_003287394.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25] gi|151938276|gb|EDN57115.1| exonuclease, DNA polymerase III, epsilon subunit family [Vibrio sp. Ex25] gi|262339135|gb|ACY52929.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25] Length = 204 Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 11/179 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + N +V D ETTGL DR IEIGAV+L+D + +FQ + P G + S Sbjct: 1 MPQANS--VVVLDFETTGLSPTLGDRAIEIGAVKLVDG-EVVDSFQRLMNP-GFRVSSFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L+ PS + + F +F +N IAHNA FD F++AEL+RIN Sbjct: 57 ENYTGITNNMLRSAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCG--Y 112 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +L +ARR + L L + I H AL D+ + + +++ M+ G Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDG-VFHRALADAQMTAKLWLLMVEG 170 >gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM 43017] gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family [Saccharomonospora viridis DSM 43017] Length = 570 Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 25/226 (11%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ +V D+ETTG+ I EIGAV++ F + P G P+ + Sbjct: 10 TPLREVTFVVVDLETTGVTPDGAGITEIGAVKVRGGEVVGE-FATLVDP-GVPIPPQIVA 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT ++ P + F +F + A +AHNA FDV F+ A Q + P Sbjct: 68 LTGITPAMVRSAPRIEQVLPTFLEFVS--GAVLVAHNAGFDVSFLKAACQTHGYEWPKP- 124 Query: 122 RIIDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ TL +ARR + L++L +G + KH AL D+ DV ++ Sbjct: 125 TVVCTLKLARRVLGRQETRGHRLSTLASLFGARST--PKHRALDDAKATVDVLHGLLERV 182 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEH 224 + + +E + ++ +R K L H Sbjct: 183 GPLGV-------QSLEELLDYLRAVTPAQRRK--------RGLAAH 213 >gi|326791606|ref|YP_004309427.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427] gi|326542370|gb|ADZ84229.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM 5427] Length = 1468 Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG K +RIIEIGAV+++ + TF F+ P + KL GI D Sbjct: 442 YVVFDLETTGFSPKMNRIIEIGAVKVV-GGQIVDTFSEFVNPK-VPIPYQIEKLTGINDR 499 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + + +F F + +AHNA FD+ FI A + ++DT++ Sbjct: 500 MVMEAETIEVLLPQFLAFC--EGCVMVAHNADFDMSFIEANAKEQGLAA--DFTVMDTVA 555 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +AR P LN++ K I++ + H A+ D+ +++++ + + Sbjct: 556 LARILMPHLGNFKLNNVAKHLDISLENH--HRAVDDATATGEIFVRFIEMLQE 606 >gi|160915589|ref|ZP_02077800.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991] gi|158432709|gb|EDP10998.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991] Length = 1447 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 5/181 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I + VFD+ETTGL S+ D IIE G + D + ++ Q+F+ P ++ Sbjct: 392 IGLEEGTYCVFDLETTGLSSRFDHIIEFGGQIVKDRTCI-KSLQLFIKPP-VPIPAHIVE 449 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GI++E +++ SF+ + DF ++ +AHNA FD F+N+EL RI + PLD + Sbjct: 450 LTGISEEHVRNAKSFAECADQILDFIG--DSILVAHNADFDYNFLNSELVRIGRKPLD-N 506 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR L + + YGI H A D+ +L++ Y+ M+ I Sbjct: 507 PVIDTLDLARSMQDRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLANTYMNMLNDLKHI 566 Query: 182 N 182 Sbjct: 567 Q 567 >gi|315443891|ref|YP_004076770.1| exonuclease, DNA polymerase III subunit epsilon family [Mycobacterium sp. Spyr1] gi|315262194|gb|ADT98935.1| exonuclease, DNA polymerase III, epsilon subunit family [Mycobacterium sp. Spyr1] Length = 617 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 20/213 (9%) Query: 4 KNKMRKIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + +V D+ETTG + DR I EIGAV++ F + P GR P+ + Sbjct: 17 LRETTFVVVDLETTGGRASGDRHDAITEIGAVKVRGGEVLGE-FATLVDP-GRAIPPQIV 74 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GIT + D P S+ F +F + A +AHNA FD+GF+ A +R N+ P Sbjct: 75 ALTGITSAMVYDAPRIESVLPSFLEFC--RGAVLVAHNAGFDMGFLRAAAER-NQVPWPK 131 Query: 121 SRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++ T+++ARR L++L + +G + + H AL D+ DV ++ Sbjct: 132 PPVLCTVALARRVLTRDEAPSVKLSALARLFGASTT--PTHRALDDARATVDVLHALIER 189 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 N G T + E + +P+++ +R K Sbjct: 190 VG--NQGVHT-----YAELRAYLPDVTPAQRRK 215 >gi|145223545|ref|YP_001134223.1| hypothetical protein Mflv_2958 [Mycobacterium gilvum PYR-GCK] gi|145216031|gb|ABP45435.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK] Length = 617 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 20/213 (9%) Query: 4 KNKMRKIVFDIETTGLDSKNDR---IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + +V D+ETTG + DR I EIGAV++ F + P GR P+ + Sbjct: 17 LRETTFVVVDLETTGGRASGDRHDAITEIGAVKVRGGEVLGE-FATLVDP-GRAIPPQIV 74 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GIT + D P S+ F +F + A +AHNA FD+GF+ A +R N+ P Sbjct: 75 ALTGITSAMVYDAPRIESVLPSFLEFC--RGAVLVAHNAGFDMGFLRAAAER-NQVPWPK 131 Query: 121 SRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++ T+++ARR L++L + +G + + H AL D+ DV ++ Sbjct: 132 PPVLCTVALARRVLTRDEAPSVKLSALARLFGASTT--PTHRALDDARATVDVLHALIER 189 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 N G T + E + +P+++ +R K Sbjct: 190 VG--NQGVHT-----YAELRAYLPDVTPAQRRK 215 >gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] Length = 1437 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 17/219 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P G S + L ITD+ Sbjct: 414 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDD 471 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +F F F + A + HN FDVGF++ +R +D + +IDTL Sbjct: 472 MVHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 528 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---------MVGG 178 ++R HP + + L++L K+Y +++ H H A D+ + + M Sbjct: 529 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANADAEATGYLLYALEKEAAKMYNMTKL 586 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 +Q+N E + K LF ++ Sbjct: 587 NQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVS 625 >gi|94501331|ref|ZP_01307852.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65] gi|94426602|gb|EAT11589.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65] Length = 738 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 9/167 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + ++ D+ETTG + R+ E+G V++L+ + +Q + P R +L GI Sbjct: 570 EQPYVIVDVETTGGRKEQHRVTEVGMVKVLNGEIVDE-WQSLINP-MRHIPQSITRLTGI 627 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++E + + P F + E +F + ++AHN FD GF +E +R+ + + + Sbjct: 628 SNEMVSNAPVFDDVADEIAEFCA--GSVFVAHNVNFDYGFFRSEFERLGRRF--HAPKLC 683 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 T+ ++R+ P S L LC I + + H AL D+ + V+ Sbjct: 684 TVQMSRKYLPGHSSYSLGKLCAALDIDLENH--HRALDDAKAAAHVF 728 >gi|229043387|ref|ZP_04191104.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH676] gi|228725968|gb|EEL77208.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH676] Length = 934 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVEMAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|116333947|ref|YP_795474.1| DNA polymerase III PolC [Lactobacillus brevis ATCC 367] gi|122269369|sp|Q03QS9|DPO3_LACBA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116099294|gb|ABJ64443.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus brevis ATCC 367] Length = 1445 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 11/198 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV+ +++ F+ F+ P G S + L ITD+ Sbjct: 425 YVVFDVETTGLSAIYDKVIELSAVK-MEHQNVVDQFEEFIDP-GFPLSEQTTNLTSITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +F F +F +A + HN FDVGF+N QR + + IIDTL+ Sbjct: 483 MVAGSKSEEEVFKLFREFCG--DAIIVGHNVTFDVGFMNTGYQRHGMAEIS-NPIIDTLT 539 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVGGSQINFG 184 +AR +P+ + LN+L KR+ +++ H H A+ D+ +++K I + Sbjct: 540 LARFLYPTLKSYRLNTLAKRFHVSLEHH--HRAVYDAESTGHLNYLFLKDAEDRYDIQYH 597 Query: 185 FKTNEDRFFKEEKKTVPN 202 + N+ + K Sbjct: 598 DQLNDHMTDNDAYKHARP 615 >gi|110598328|ref|ZP_01386602.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM 13031] gi|110340026|gb|EAT58527.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM 13031] Length = 219 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 10/189 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M RK +V D ETTGL + DR IEIGAV L + R FQ + P G + S Sbjct: 1 MQRKLAESVVVLDFETTGLSPEYGDRAIEIGAVLLEEGEIVGR-FQKLMNP-GFRISQFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+E LK +P + +EF +F +N +AHNA FD F++ EL+R + Sbjct: 59 EGYTGITNEMLKGQPCCEEVMAEFSEFIAGRN--IVAHNAAFDRRFLDFELKRAKR--AY 114 Query: 120 PSRIIDTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L ++RR + S + L +L GI + H AL D+ + + +++ M+ Sbjct: 115 EGSCCCSLLVSRRIYQDSPNHRLQTLVSHAGIRQTG-VFHRALADAEMTAQLWLSMIERI 173 Query: 179 SQINFGFKT 187 + +G T Sbjct: 174 RR-QYGMPT 181 >gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG] gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG] gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG] Length = 1444 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 17/219 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P G S + L ITD+ Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +F F F + A + HN FDVGF++ +R +D + +IDTL Sbjct: 479 MVHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---------MVGG 178 ++R HP + + L++L K+Y +++ H H A D+ + + M Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANADAEATGYLLYALEKEAAKMYNMTKL 593 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 +Q+N E + K LF ++ Sbjct: 594 NQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVS 632 >gi|229084648|ref|ZP_04216916.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-44] gi|228698671|gb|EEL51388.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-44] Length = 930 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 89/179 (49%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I ++ AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQVAAVVVEDG-EILEIFSSFVNPE-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ +K P F + + Q A ++AHN FD F+ EL++ ++ + ID Sbjct: 62 DEDLVKQAPLFCDVAPMIVELL--QGAYFVAHNVHFDWNFLREELKQAGYGEVN-CQKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 T+ +A+ P++ L L K++ + H H A D+ + ++++++ + Q+ Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALVTAELFLQFLNQLEQLPL 175 >gi|229172279|ref|ZP_04299843.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3] gi|228611267|gb|EEK68525.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3] Length = 934 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL+ + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRWAGYTEVH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|332686699|ref|YP_004456473.1| DNA polymerase III subunit alpha [Melissococcus plutonius ATCC 35311] gi|332370708|dbj|BAK21664.1| DNA polymerase III alpha subunit [Melissococcus plutonius ATCC 35311] Length = 1450 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 11/184 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + + TF+ F+ P G S + L GIT+E Sbjct: 425 YVVFDVETTGLSAVYDTIIELSAVKMHKGNVID-TFEQFINP-GHPLSQTTIHLTGITNE 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D S + + F F +N +AHNA FD+GF+N ++ P + +IDTL Sbjct: 483 MVSDAKSEKVVLNMFKKF--SENTILVAHNAAFDMGFLNTSYRKYKI-PEAENPVIDTLE 539 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFG 184 +AR +P+ + + LN L K++G+ + H A+ DS + ++K +N+ Sbjct: 540 LARYLYPTLKSHRLNVLAKKFGVGLEQH--HRAIYDSEATGHLCWIFLKETKEKFSMNYH 597 Query: 185 FKTN 188 + N Sbjct: 598 DELN 601 >gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus rhamnosus HN001] gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus rhamnosus HN001] Length = 1444 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 17/219 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P G S + L ITD+ Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +F F F + A + HN FDVGF++ +R +D + +IDTL Sbjct: 479 MVHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---------MVGG 178 ++R HP + + L++L K+Y +++ H H A D+ + + M Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANADAEATGYLLYALEKEAAKMYNMTKL 593 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 +Q+N E + K LF ++ Sbjct: 594 NQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVS 632 >gi|225849433|ref|YP_002729598.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium azorense Az-Fu1] gi|225644689|gb|ACN99739.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium azorense Az-Fu1] Length = 205 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 87/168 (51%), Gaps = 7/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTGL+ N IIEI A+ ++ F + P+ KL GIT+ Sbjct: 11 FLIVDLETTGLNPVNSEIIEIAALR-VEGGIVVDKFHTLVKPSIGFIPTYITKLTGITNA 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DKP+ +F +F F +N+ +AHNA+FD+ F+N+ +I + + ++ T + Sbjct: 70 LVVDKPTIEEVFPQFLKF--SENSIIVAHNAQFDMSFLNSVSYQITGRSI-QNPVLCTQN 126 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+R P L +L + I + + H AL D+ + +++ K++ Sbjct: 127 LAKRLFPDLPSKSLVNLAYHFNIPYNKK--HRALEDALVTYELFKKII 172 >gi|317132568|ref|YP_004091882.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3] gi|315470547|gb|ADU27151.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3] Length = 1457 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 12/178 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL+ +NDRI EIGAV + + + F +F+ P+ + P +L GITD+ Sbjct: 443 FVAFDLETTGLNRENDRITEIGAVRIRNG-EIGERFDLFVNPH-KPIPPRITELTGITDD 500 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD +F+ F +A +AHNA+FD GF A R + P +D++ Sbjct: 501 MVKDAAEEDEALRQFFAFCG--DAVLVAHNAEFDTGFCRAAAARCGMEF--PYTYMDSIP 556 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKMMVGGSQIN 182 + R P +N L+++ G+ + + H A D+ +L + + M+ + Sbjct: 557 LCRTVLPGLKNYKLDTVAG--GLHLPPFNHHRASDDAFVLGQILVQVLDMLREQKGVG 612 >gi|229918731|ref|YP_002887377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Exiguobacterium sp. AT1b] gi|229470160|gb|ACQ71932.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sp. AT1b] Length = 936 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++ D+ETTG K D +IE AV + + R + + P+ R P +L I+D Sbjct: 4 YVIVDLETTGHSVKSGDELIEFAAVVVQEGEVIER-YSTLIRPS-RPIPPFITQLTTISD 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + D P+F + + W + + ++AHN FD+ F+N L++ R IDT+ Sbjct: 62 EDVSDAPTFEDVIPDIWKMLDGR--VFVAHNVAFDLTFLNESLEQAGYLAF-QGRAIDTV 118 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR +P+ + L +L + + H H AL D+ ++++I+M+ Sbjct: 119 ELARILYPTLESHALEALSDTF--DLVHTDAHRALSDAEATAELFIRML 165 >gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96] gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96] Length = 1439 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604 >gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5] gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5] Length = 1439 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604 >gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3] gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704] gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3] gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704] Length = 1439 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604 >gi|154505436|ref|ZP_02042174.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149] gi|153794279|gb|EDN76699.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149] Length = 219 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTG+ + D IIEI AV+ + TF + P GR +A K++GITD+ Sbjct: 15 YTVFDLETTGISANMDDIIEISAVK-VKGGIVQDTFSTLVNP-GRHIPAQATKVNGITDQ 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P +EF F E + HN FD+ FI E++ + ++ + + IDTL Sbjct: 73 MVSEAPLIREAMTEFLRFVGED--ILVGHNIQSFDMKFIYREVEELFQETVS-NDFIDTL 129 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR+ P ++ L L + +GI S + H AL D + + +M Sbjct: 130 YMARKCLPELKHHRLTDLAEHFGI--SSKGAHRALNDCVMNQKCFEEM 175 >gi|312978245|ref|ZP_07789989.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus crispatus CTV-05] gi|310894963|gb|EFQ44033.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus crispatus CTV-05] Length = 836 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 8/175 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + + F F+ P+ S + + Sbjct: 412 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNG-EVLERFDKFINPH-HPLSEQTIN 469 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + + +F DF+ ++ HN +FDVGF+NA L+R + Sbjct: 470 LTSITDEMVGAADDEAVVIKQFQDFYGDR--PLCGHNVQFDVGFVNAALRRAGLKEI-TQ 526 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++R HP SR+ L+SL K+Y +++ H H A D+ + K++ Sbjct: 527 PVVDTLEVSRLLHPEQSRHTLDSLAKKYNVSLEHH--HRANQDAEATGYLMFKLL 579 >gi|229029323|ref|ZP_04185411.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1271] gi|228731982|gb|EEL82876.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1271] Length = 934 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEVH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6] gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6] Length = 1439 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604 >gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1] gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1] gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol] gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1] gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG] gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1] gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1] gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol] gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1] gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG] Length = 1439 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604 >gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM 44385] gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM 44385] Length = 616 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 13/214 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL + DRIIEIGAV++ + +R F F+ P GR P + GI+D+ Sbjct: 34 FVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISR-FSTFVDP-GRLIPPLITNITGISDD 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + +F +F + +AHNA+FD+GF+ A R + P + TL Sbjct: 92 DVNGAPKEAQAVKDFLEF--ARGTVLVAHNARFDIGFLQAASMRAHITWPQP-THLCTLV 148 Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +AR L+SL + + T + H AL D+ V+ ++ ++ Sbjct: 149 LARTMLDRCAVGSFKLSSLARHFHATTT--PTHRALDDALATVTVFHGLL---EELGSHD 203 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + + S+ + P T I+ Sbjct: 204 IIHVGDIPTRPSRGAAGASVFQVPTPDATSISPS 237 >gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] Length = 1358 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL DRI EIGA +++D K + + P + ++ GIT++ Sbjct: 342 FVVFDLETTGLSRYRDRITEIGACKVIDG-KICEIYNELVNPE-MLIPEKITEITGITNQ 399 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + F +F Q + + N FDVGF+ R+ D +DTL Sbjct: 400 MVESCPKIEEVLPGFLEFC--QGSILVGQNTDFDVGFVRENCTRLGLDF--NPLYLDTLP 455 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR + L+ + ++ I + H A D+ + ++IKM Sbjct: 456 MARALFADMKKFSLDKIARKLEIPAFNH--HRASDDARATAQIFIKM 500 >gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2] gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2] Length = 1439 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604 >gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium sp. AT7] gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium sp. AT7] Length = 1395 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 11/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + + IIE+ AV++ + +F+ F+ P G S + Sbjct: 419 IELTDATYVVFDVETTGLSAVYNSIIELSAVKMHKGNII-ESFEQFIDP-GHPLSQTTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + + F +F ++ +AHNA FD+GF+N + N P + Sbjct: 477 LTGITDEMVQGSKSEEEVLTLFKEFAG--DSILVAHNASFDMGFLNTSNAKHNI-PDAEN 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVG 177 +IDTL ++R HP + LN+L K+YG+ + H A+ D+ V++K Sbjct: 534 PVIDTLELSRFLHPQFKSHRLNTLAKKYGVNLEQH--HRAIFDAETTGHLCWVFLKEARE 591 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNI 203 I+F + NE + K Sbjct: 592 EHDIHFQDQLNEHTGEGDAYKRARPF 617 >gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11] gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11] Length = 1439 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604 >gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188] gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188] Length = 1439 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604 >gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855] gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855] Length = 1451 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616 >gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712] gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613] gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512] gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis DAPTO 516] gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712] gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613] gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512] gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis DAPTO 516] Length = 1451 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616 >gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322] gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis TUSoD Ef11] gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322] gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis TUSoD Ef11] gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027] Length = 1451 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616 >gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302] Length = 1451 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616 >gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137] Length = 1451 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616 >gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470] gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470] Length = 1451 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616 >gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109] gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109] gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017] Length = 1451 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616 >gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200] gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8] gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98] gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis PC1.1] gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248] gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134] gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411] gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102] gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200] gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8] gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98] gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis PC1.1] gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411] gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134] gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248] gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102] gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000] gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141] gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244] gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031] gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043] gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312] gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645] gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341] gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346] gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis 62] gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF] gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467] Length = 1451 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616 >gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis] Length = 1439 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 407 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 464 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 465 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 521 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 522 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 579 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 580 NHDMHFHDDLNRHIGEGDSY-------KRARP 604 >gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012] Length = 1451 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616 >gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM 43833] gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM 43833] Length = 574 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 89/227 (39%), Gaps = 27/227 (11%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +++ +VFD+ETTG D I EIGAV+ + + F + P GR P Sbjct: 13 TPLHEVTFVVFDLETTGGSPAEDAITEIGAVK-VCGGQVRGEFATLIDP-GRPIPPFISV 70 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD + P + F +F + A +AHNA FD+GF+ A P + Sbjct: 71 LTGITDAMVVAAPKLPQVLPAFLEFI--RGATLVAHNAPFDLGFLRAACAEYGYPP-PAN 127 Query: 122 RIIDTLSIARRKHPSSRN---DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++DT +ARR L +L + + + H AL D+ DV ++ Sbjct: 128 PVVDTADLARRMLTRDETPDCKLATLARYF--RSATEPCHRALADARATVDVLHGLLERA 185 Query: 179 SQINFGFKTNED---------------RFFKEEKKTVPNISLLKRDK 210 G T E+ R E P + + + K Sbjct: 186 G--ALGVHTLEELRAFNRMPTPEQRRKRHLAEGVPAAPGVYVFEDAK 230 >gi|228938753|ref|ZP_04101356.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971635|ref|ZP_04132257.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978244|ref|ZP_04138621.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis Bt407] gi|228781261|gb|EEM29462.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis Bt407] gi|228788048|gb|EEM36005.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820928|gb|EEM66950.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939259|gb|AEA15155.1| ATP-dependent helicase DinG [Bacillus thuringiensis serovar chinensis CT-43] Length = 934 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342] Length = 1451 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616 >gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635] gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635] gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630] Length = 1451 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616 >gi|308273149|emb|CBX29752.1| hypothetical protein N47_F14470 [uncultured Desulfobacterium sp.] Length = 182 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 99/177 (55%), Gaps = 9/177 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + N + ++FD+ETTG + + RIIEIG V + + + + F+ + G+ S +A Sbjct: 10 MSSNSDKYVIFDVETTGFNPQHGARIIEIGVVHIENGNIISE-FKSLINC-GKAVSKQAQ 67 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K++GIT+E L +P+ +F +F F ++ + +AHNA FD+ F+ EL R+ + Sbjct: 68 KVNGITNEMLSGEPTPEEVFPDFLKFISK--STLVAHNAVFDISFLRYELSRLGF--VLS 123 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVYIKMM 175 + + TL+I+R+ P + L ++ K + + + H AL D+ L + ++++MM Sbjct: 124 NDYLCTLNISRKIFPDLENHKLLTVAKHILVNLPKNLHLHRALDDARLTAMIWMEMM 180 >gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860] gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860] Length = 1451 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616 >gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583] gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22] gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis V583] gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22] gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B] gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A] Length = 1451 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 419 IELTDATYVVFDVETTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE ++ S + F +F + +AHNA FD+GF+N + P + Sbjct: 477 LTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAAN 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGGS 179 +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 534 PVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAKE 591 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 592 NHDMHFHDDLNRHIGEGDSY-------KRARP 616 >gi|291530449|emb|CBK96034.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum 70/3] Length = 1605 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 90/169 (53%), Gaps = 11/169 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTGL N+RI EIGAV+L + +R F F+ P +L GITD+ Sbjct: 591 IIVFDIETTGLHPANERITEIGAVKLRNMEIVDR-FSTFVNP-MMPIPSNITELTGITDD 648 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ S+F F N+ AHNAKFDV FI + R+ K +P ++DTLS Sbjct: 649 MVADAPTEDVAVSDFMAFCG--NSPVCAHNAKFDVSFIRSAATRMGKSFDNP--VVDTLS 704 Query: 129 IARRKHPS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175 IA+ L+++ K + + H H A+ D+ +L +Y+ ++ Sbjct: 705 IAKAALKGIKNYKLDTIAKYFKLGDFDH---HRAVADAEMLCMIYMHIV 750 >gi|163815213|ref|ZP_02206590.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759] gi|158449408|gb|EDP26403.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759] Length = 1623 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTGL K+++IIEIGAV++ D + TF F+ P G + +L I D+ Sbjct: 567 YVVFDIETTGLSKKHNKIIEIGAVKVKDG-EVVDTFSEFINP-GVPIPYQIEQLTSINDD 624 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + I F +F + +AHNA FD GF+ + + + ++DT++ Sbjct: 625 MVKDAPMYDVIVPRFVEFCGDD--IVVAHNASFDTGFVKKNAEELGLRF--DNTVLDTMT 680 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ P + L+ +CK + +H H A+ D+ S V+ K++ Sbjct: 681 LSHILLPELGKFTLDRVCKELKVVNAHH--HRAIDDAEATSKVFFKLL 726 >gi|237756693|ref|ZP_04585197.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense SS-5] gi|237691145|gb|EEP60249.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense SS-5] Length = 205 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 9/179 (5%) Query: 1 MIRK--NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 MI + V D+ETTGL+ K IIEI A++ ++ + F + P+ Sbjct: 1 MINLTIEEATFTVVDLETTGLNPKTSEIIEIAAIK-VEGNVITEKFHTLVKPSIGFIPEH 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 KL GIT+ + DKP +F F +F +N+ IAHNAKFD+ F+N ++ L Sbjct: 60 ITKLTGITNPLVIDKPKIEQVFPHFLEF--TKNSIIIAHNAKFDISFLNEASFQLTGK-L 116 Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + +I TL +A R P ++ L +L + I KH AL D+ + +++ K + Sbjct: 117 IQNPVICTLVLANRLFPDLKSKSLTNLAYHFNIPY--HRKHRALADAEVTYELFKKFVE 173 >gi|291484662|dbj|BAI85737.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. natto BEST195] Length = 931 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 92/182 (50%), Gaps = 9/182 (4%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN + +L Sbjct: 1 MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIEQL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI+++ ++++ F ++ E + + A ++AHN FD+GF+ EL + L Sbjct: 59 TGISNQMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELHKAGFQ-LPDCE 115 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DT+ ++R P L L + + + H H A D+ + ++++++ Q+ Sbjct: 116 VLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEILEKLRQL 173 Query: 182 NF 183 + Sbjct: 174 PY 175 >gi|323493701|ref|ZP_08098821.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546] gi|323312041|gb|EGA65185.1| DNA polymerase III, alpha subunit [Vibrio brasiliensis LMG 20546] Length = 204 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 89/186 (47%), Gaps = 11/186 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M N IV D ETTGL DR IEIGAV+L++ + TFQ + P G + S Sbjct: 1 MPTANS--VIVLDFETTGLSPNMGDRAIEIGAVKLING-EVVDTFQQLMNP-GFRVSSFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L + PS + S+F F + N +AHNA FD F++AE RINKD L Sbjct: 57 EGYTGITNAMLANAPSCEEVMSQFHSFIADDN--LVAHNASFDKRFLDAEFDRINKDYLG 114 Query: 120 PSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L ++RR + + L L + I H AL DS + + +++ M+ Sbjct: 115 DFA--CSLLVSRRLNQDAPSHKLGDLVRYKQIDNDG-VFHRALADSQMTAKLWLLMLEDI 171 Query: 179 SQINFG 184 Q Sbjct: 172 EQRGIS 177 >gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 1402 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG DS+ DRIIEIGAV++ + T+R F F+ P G K +L GI + Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITDR-FSTFVDPEG-KIPVRISELTGIYQD 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P EF F ++ +AHNA+FD+GF+ Q + IDTL Sbjct: 448 MVDKAPKLIDAILEFERF--ASSSVLVAHNAQFDIGFLKKAYQECGI--IFDYTYIDTLE 503 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++RR S LN + + + + H H A D+ + ++I ++ + Sbjct: 504 LSRRLLTDLSSYKLNKVAEFLNVELRHH--HRADSDAETTAGIFISLLERLKARGY 557 >gi|228990657|ref|ZP_04150622.1| DnaQ family exonuclease/DinG family helicase [Bacillus pseudomycoides DSM 12442] gi|228769183|gb|EEM17781.1| DnaQ family exonuclease/DinG family helicase [Bacillus pseudomycoides DSM 12442] Length = 930 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ DRI +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDRITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ ++ ID Sbjct: 62 DENLVKQAPLFCDVAPMVAELL--QGAYFVAHNVHFDWNFLKEELKQAGYGEVN-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 T+ +A+ P++ L L K++ + H H A D+ + ++++++ + ++ Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALVTAELFLQFLNQLEKLPL 175 >gi|15896683|ref|NP_350032.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC 824] gi|15026532|gb|AAK81372.1|AE007841_7 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC 824] gi|325510847|gb|ADZ22483.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA 2018] Length = 1452 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 11/183 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG K ++I EIG ++ + ++ F +F+ P + +++ ITD+ Sbjct: 428 YCVLDLETTGFSPKTEKITEIGIMKYENGKVIDK-FSLFVNPE-KPIPARVVEVTNITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + +F + +F + + +AHNA FD+GF+ + + + +DTLS Sbjct: 486 MVKNAETIDKVFPKMLEFI--KGSVLVAHNASFDIGFLKHNAKVLGYEF--DFTYLDTLS 541 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P + L + K GI + H AL D V+ M+ + G KT Sbjct: 542 LAQAVFPQYKSYKLGRIAKNLGIKVE--VAHRALDDVDTTVKVFKVMLEILKER--GAKT 597 Query: 188 NED 190 ED Sbjct: 598 LED 600 >gi|321311709|ref|YP_004203996.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis BSn5] gi|320017983|gb|ADV92969.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis BSn5] Length = 931 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 92/182 (50%), Gaps = 9/182 (4%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN + +L Sbjct: 1 MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIEQL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI+++ ++++ F ++ E + + A ++AHN FD+GF+ EL + L Sbjct: 59 TGISNQMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELHKAGFQ-LPDCE 115 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DT+ ++R P L L + + + H H A D+ + ++++++ Q+ Sbjct: 116 VLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEILEKLRQL 173 Query: 182 NF 183 + Sbjct: 174 PY 175 >gi|320332653|ref|YP_004169364.1| DNA polymerase III subunit epsilon [Deinococcus maricopensis DSM 21211] gi|319753942|gb|ADV65699.1| DNA polymerase III, epsilon subunit [Deinococcus maricopensis DSM 21211] Length = 174 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 6/172 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGI 65 M +VFD+ETTGL + D I+EIGA+ + + + TF + P R ++HGI Sbjct: 1 MEYVVFDLETTGLSPERDAIVEIGAIRIRNGEVLEDDTFHTLVNPE-RDIPWYVSRVHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + P + F + +AHNA FD GFI A R + P R I Sbjct: 60 RNAHVASAPRITEALPAFLQYAGT--TPVVAHNAAFDTGFIRAAAARQGLEW-RPQREIC 116 Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 TL ++RR P + + L++L +R G+ R H A D+ L + + ++ Sbjct: 117 TLQLSRRAFPREKSHKLDALAQRLGLLQEARGLHSAHADARLTAHAFAHLLR 168 >gi|188997343|ref|YP_001931594.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188932410|gb|ACD67040.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 205 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 9/178 (5%) Query: 1 MIRK--NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 MI + V D+ETTGL+ K IIEI A++ ++ S F + P+ Sbjct: 1 MINLTIEEATFTVVDLETTGLNPKTSEIIEIAAIK-VEGSVITEKFHTLVKPSIGFIPEH 59 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 KL GIT+ + DKP +F F +F +N+ IAHNAKFD+ F+N ++ L Sbjct: 60 ITKLTGITNPLVIDKPKIEQVFPHFLEF--TKNSIIIAHNAKFDISFLNEASLQLTGK-L 116 Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +I TL +A R P ++ L +L + I KH AL D+ + +++ K + Sbjct: 117 IQNPVICTLVLANRLFPDLKSKSLTNLAYHFNIPY--HRKHRALADAEVTYELFKKFV 172 >gi|228920352|ref|ZP_04083698.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839274|gb|EEM84569.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 934 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|228952021|ref|ZP_04114116.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957917|ref|ZP_04119657.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801833|gb|EEM48710.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807553|gb|EEM54077.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 934 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|229149839|ref|ZP_04278067.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1550] gi|228633520|gb|EEK90121.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus m1550] Length = 934 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHNQPHRADSDALATAELFLQFL 167 >gi|16079297|ref|NP_390121.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. 168] gi|221310156|ref|ZP_03592003.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. 168] gi|221314478|ref|ZP_03596283.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319400|ref|ZP_03600694.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. JH642] gi|221323676|ref|ZP_03604970.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. subtilis str. SMY] gi|1706437|sp|P54394|DING_BACSU RecName: Full=Probable ATP-dependent helicase dinG homolog gi|1146243|gb|AAB38451.1| 22.4% identity with Escherichia coli DNA-damage inducible protein ...; putative [Bacillus subtilis subsp. subtilis str. 168] gi|2634658|emb|CAB14156.1| damage inducible ATP-dependent helicase [Bacillus subtilis subsp. subtilis str. 168] Length = 931 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 92/182 (50%), Gaps = 9/182 (4%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN + +L Sbjct: 1 MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIEQL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI+++ ++++ F ++ E + + A ++AHN FD+GF+ EL + L Sbjct: 59 TGISNQMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELHKAGFQ-LPDCE 115 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DT+ ++R P L L + + + H H A D+ + ++++++ Q+ Sbjct: 116 VLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEILEKLRQL 173 Query: 182 NF 183 + Sbjct: 174 PY 175 >gi|288904428|ref|YP_003429649.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34] gi|306830461|ref|ZP_07463631.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977425|ref|YP_004287141.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731153|emb|CBI12701.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34] gi|304427486|gb|EFM30588.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177353|emb|CBZ47397.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 1464 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I N+ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 419 IELNEATYVVFDVETTGLSAVNNELIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTE 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD +++ + F DF Q+ +AHNA FDVGF+NA +R P+ Sbjct: 477 LTGITDNHVRNAKPIEEVLQMFQDFC--QDTVLVAHNATFDVGFMNANYERHGM-PIITQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ +++ H H A D+ + Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 582 >gi|300856235|ref|YP_003781219.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528] gi|300436350|gb|ADK16117.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528] Length = 1449 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 9/207 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG ++I EIG +++ D + TF F+ P + +++ ITD+ Sbjct: 426 YCVLDLETTGFSPVTEKITEIGIMKIKDGKVID-TFSTFVNPE-KPIPLRVVEVTNITDD 483 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ + +F + DF +++ +AHNA+FDVGF+ + + D +DTLS Sbjct: 484 MVRNAETIEQVFPKMLDFI--KDSVLVAHNAEFDVGFLKHNAKILGCDF--DFTYVDTLS 539 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P + L + K GI + H AL D V+ M+ + Sbjct: 540 LAQEVFPDFKTYKLGRIAKNLGIKVE--VAHRALDDVATTVKVFNVMLEKLKERGAENLK 597 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFT 214 + D + ++E LK + Sbjct: 598 DIDIYGRDEAAKKEEYKKLKTYHAIIL 624 >gi|206970727|ref|ZP_03231679.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1134] gi|229078824|ref|ZP_04211377.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock4-2] gi|229178049|ref|ZP_04305421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 172560W] gi|206734363|gb|EDZ51533.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1134] gi|228605537|gb|EEK62986.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus 172560W] gi|228704506|gb|EEL56939.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock4-2] Length = 934 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247] gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM 43247] Length = 595 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 10/170 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG D DRI EIGAV++ F + P R P+ + L GIT Sbjct: 39 VVVDLETTGSDPAGDRITEIGAVKIRGGEVLGE-FATLVDPE-RSIPPQIVTLTGITHAM 96 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P + F +F + + +AHNA+FD+GF+ QR++ D P + T+++ Sbjct: 97 VSAAPRIEEVLPAFIEF--ARGSILVAHNARFDMGFLRRNAQRLHLDFPFP-LSLCTVTM 153 Query: 130 ARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ARR L++L + +++ R H AL D+ +V+ ++ Sbjct: 154 ARRILHREEAPTVRLSALADLFDVSV--RPTHRALDDARATVEVFHHLLE 201 >gi|160880751|ref|YP_001559719.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg] gi|160429417|gb|ABX42980.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg] Length = 1527 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 11/188 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG S D+IIEIGAV+ + + F F+ P KL ITDE Sbjct: 498 VVFDIETTGFSSVKDKIIEIGAVK-IQHGTIVDRFSTFINPE-VPIPYHIQKLTSITDEM 555 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + I EF F + +AHNA FD+GFI + + +N +DT+ + Sbjct: 556 VIGSRTIEEILPEFLSFC--EGCYLVAHNASFDIGFITKKAEFLNIPL--TVTSVDTVGL 611 Query: 130 ARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 AR N L+++ K I++ + H A+ D+ +++Y+K + + G +T Sbjct: 612 ARVLLNHLNNFKLDTVAKALSISLENH--HRAVDDAGCTAEIYLKFLEMLRER--GIETL 667 Query: 189 EDRFFKEE 196 EE Sbjct: 668 AQINRAEE 675 >gi|229109097|ref|ZP_04238697.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-15] gi|228674375|gb|EEL29619.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-15] Length = 934 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL+++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQVGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|229126955|ref|ZP_04255966.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-Cer4] gi|228656555|gb|EEL12382.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-Cer4] Length = 934 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|229144240|ref|ZP_04272654.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST24] gi|228639248|gb|EEK95664.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST24] Length = 934 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|37677155|ref|NP_937551.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016] gi|320159243|ref|YP_004191621.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O] gi|37201700|dbj|BAC97521.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016] gi|319934555|gb|ADV89418.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O] Length = 204 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 11/178 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + N +V D ETTGL DR IEIGAV+L++ + TFQ + P G + S Sbjct: 1 MPQANS--VVVLDFETTGLSPNLGDRAIEIGAVKLVNG-EVVETFQQLMNP-GFRVSSFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L+ PS + + F +F +N IAHNA FD F++AEL+RIN D Sbjct: 57 ESYTGITNNMLRSAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCD--Y 112 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +L +ARR + L L + I H AL D+ + + +++ M+ Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDG-VFHRALADAQMTAKLWLLMVE 169 >gi|152975065|ref|YP_001374582.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023817|gb|ABS21587.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cytotoxicus NVH 391-98] Length = 929 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV +++ + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAV-VVEGGEILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + ID Sbjct: 62 DENLVKQAPLFQDVAPMIVELL--QGASFVAHNVHFDWNFLKEELKQAGYADIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 T+ +A+ P++ L L K++ + H H A D+ ++++++ + ++ Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFLTQIEKLPL 175 >gi|296502210|ref|YP_003663910.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171] gi|296323262|gb|ADH06190.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171] Length = 934 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|229189723|ref|ZP_04316737.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 10876] gi|228593772|gb|EEK51577.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC 10876] Length = 934 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|229160592|ref|ZP_04288587.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus R309803] gi|228623002|gb|EEK79833.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus R309803] Length = 933 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|218896571|ref|YP_002444982.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus G9842] gi|218545327|gb|ACK97721.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus G9842] Length = 934 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|83590002|ref|YP_430011.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC 39073] gi|83572916|gb|ABC19468.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC 39073] Length = 921 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 12/170 (7%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +V D+ETTGLD DRIIEI AV L+ R FQ + P GR P +L GI Sbjct: 3 PQTYVVLDVETTGLDPARDRIIEIAAVR-LEGGNITRQFQTLVNP-GRPIPPAIERLTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D +++ P + D F ++A + HN FD+ F+N L PL +D Sbjct: 61 SDAMVREAPPLPEVLPGLLDLF--RDAIPVGHNGTFDLAFLNQALGHGWHSPL-----LD 113 Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 TL+++R P + + L+ + K +T+ H AL D + + + Sbjct: 114 TLALSRILFPCLASHRLDYMSKY--LTLEATGHHRALDDVLTTARLLENL 161 >gi|47566006|ref|ZP_00237044.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cereus G9241] gi|47556923|gb|EAL15253.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus cereus G9241] Length = 934 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFQDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ + + P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELGQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kronotskyensis 2002] gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 1402 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTG DS+ D+IIEIGAV++ + R F F+ P G K +L GI + Sbjct: 390 FVVVDIETTGFDSQRDKIIEIGAVKIENGQIIER-FSTFVDPEG-KIPVRISELTGIYQD 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + EF F + +AHNA+FD+GF+ + IDTL Sbjct: 448 MVDKAPKLNDAILEFEKF--ASGSILVAHNAQFDIGFLKKAYHECGI--IFDYTYIDTLE 503 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++RR S + LN + + + + H H A D+ + ++ ++ + Sbjct: 504 LSRRLLTDLSSHKLNKVAEFLNVELKHH--HRADSDAETTAGIFTSLLEKLKLRGY 557 >gi|218230901|ref|YP_002366323.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus cereus B4264] gi|228907275|ref|ZP_04071134.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 200] gi|229069194|ref|ZP_04202485.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus F65185] gi|218158858|gb|ACK58850.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus cereus B4264] gi|228713946|gb|EEL65830.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus F65185] gi|228852329|gb|EEM97124.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 200] Length = 934 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|228900222|ref|ZP_04064453.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 4222] gi|228859391|gb|EEN03820.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis IBL 4222] Length = 934 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium DO] gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502] gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410] gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68] gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1162] gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04] gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C] gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082] gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A] gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B] gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01] gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium DO] gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502] gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410] gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68] gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1162] gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01] gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B] gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A] gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C] gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04] gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082] Length = 1452 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 11/204 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +VFD+ETTGL + D IIE+ AV++ + +F F+ P G S + L Sbjct: 422 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 479 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD ++ S + F +F ++ +AHNA FD+GF+N R P + + Sbjct: 480 GITDGMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 536 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179 IDTL +AR +P R L L K++G+++ H A+ D+ + +++K + Sbjct: 537 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 594 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203 + + + NE + K Sbjct: 595 NMLYHDQLNEHIGEGDSYKRARPF 618 >gi|254502460|ref|ZP_05114611.1| exonuclease family [Labrenzia alexandrii DFL-11] gi|222438531|gb|EEE45210.1| exonuclease family [Labrenzia alexandrii DFL-11] Length = 471 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 7/174 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62 +++ VFD ETTGL D I++IGAV +++ + P GR P + K+ Sbjct: 274 LSELSFTVFDTETTGLMPNKDDIVQIGAVRVVNGRMVPGERIDQLVNP-GRPIPPASSKV 332 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI+D + D P ++F +F E + +AHNA FD+ F+ + + P Sbjct: 333 HGISDTMVADAPQPLEAVADFHEFARE--SVIVAHNAPFDLAFLQKYGKVAGLEW--PHP 388 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+DT+ ++ S+ + L++LC+R I I +H AL D+ ++ K++ Sbjct: 389 ILDTVLLSAVVFGSNEVHTLDALCERLCIDIRPEVRHTALGDAEATAEALCKLL 442 >gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c [Mycobacterium abscessus ATCC 19977] gi|169241025|emb|CAM62053.1| Probable DNA polymerase III epsilon subunit [Mycobacterium abscessus] Length = 600 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 14/209 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +V D+ETTG ++ND I EIGAV++ + P R P+ ++L Sbjct: 23 LRDTTFVVVDLETTGGSAENDAITEIGAVKVRGGEVLGE-LATLVDPQ-RSLPPQIVRLT 80 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT L D P + + F +F + A +AHNA FD+GF+ A ++ D P+ + Sbjct: 81 GITSAMLVDAPPIAQVLPAFLEF--ARGAVLVAHNAGFDIGFLKAAARQCGIDWPQPA-V 137 Query: 124 IDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + T+ +ARR R L +L + G + + H AL D+ DV ++ Sbjct: 138 LCTVRLARRVLSRDEAPRVSLGALAQLLGASTT--PNHRALDDARATVDVLHALISRVG- 194 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRD 209 N G T ++ + + VP+ KR Sbjct: 195 -NQGVGTMDE--LRRYRTQVPSALRGKRR 220 >gi|75760399|ref|ZP_00740443.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492110|gb|EAO55282.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 934 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|228932930|ref|ZP_04095795.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826733|gb|EEM72502.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 934 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESMVKQAPLFQDVAPMVGELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 595 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 78/207 (37%), Gaps = 9/207 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + RI E+GAV + F + P G L GIT Sbjct: 26 FVVLDLETTGTSASGSRITEVGAVRVRGGEVVGE-FATLVNP-GTPIPANITLLTGITQS 83 Query: 69 FLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P + F + + + +AHNA FD GF+ A +R D ++DTL Sbjct: 84 MVASAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDW-PGYPVVDTL 142 Query: 128 SIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 +AR + L +L +G+ ++ H AL D+ V ++ + Sbjct: 143 RLARAVLARGETRNHRLATLAAYFGVPVA--PNHRALEDARATVGVLHGLVERLRPMGVS 200 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKP 211 K K + L D P Sbjct: 201 SVEELRAVTKPPTKAQRSRRHLAEDLP 227 >gi|269968192|ref|ZP_06182223.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B] gi|269827190|gb|EEZ81493.1| hypothetical protein VMC_36530 [Vibrio alginolyticus 40B] Length = 204 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 13/204 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + N +V D ETTGL DR IEIGAV+L++ + +FQ + P G + S Sbjct: 1 MPQANS--VVVLDFETTGLSPTLGDRAIEIGAVKLVNG-EVVDSFQQLMNP-GFRVSSFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 IT+ L+ PS + + F +F +N +AHNA FD F++AEL+RIN Sbjct: 57 ENYTSITNNMLRSAPSCEEVMASFSEFIAGEN--LVAHNASFDKRFLDAELERINCG--S 112 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L +ARR + L L + I H AL D+ + + +++ M+ G Sbjct: 113 SGEFACSLLVARRLIQEAPSHKLGELVRYKNIDNDG-VFHRALADAQMTAKLWLLMVEGI 171 Query: 179 SQINFGFKTNEDRFFKEEKKTVPN 202 N G + + + KT Sbjct: 172 E--NSGVEKPSFQLMQTVSKTAKG 193 >gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium D344SRF] gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium D344SRF] Length = 1452 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 11/204 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +VFD+ETTGL + D IIE+ AV++ + +F F+ P G S + L Sbjct: 422 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 479 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD ++ S + F +F ++ +AHNA FD+GF+N R P + + Sbjct: 480 GITDGMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARHGI-PEAANPV 536 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179 IDTL +AR +P R L L K++G+++ H A+ D+ + +++K + Sbjct: 537 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 594 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203 + + + NE + K Sbjct: 595 NMLYHDQLNEHIGEGDSYKRARPF 618 >gi|307243879|ref|ZP_07526004.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678] gi|306492701|gb|EFM64729.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678] Length = 172 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 11/169 (6%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTGL D IIEIG V + + R + + PNG ++ IT+ Sbjct: 8 YVVVDLETTGLSPFNGDEIIEIG-VTEIKGDRIYRNYSRLVKPNGF-IPSVITEITNITN 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++D + F F ++ IAHNAKFD+GF+N L+++N DP+D + I T+ Sbjct: 66 DMVQDALPLEDVLPNFRKFIGDR--TIIAHNAKFDIGFLNYYLEKMNLDPID--KYICTM 121 Query: 128 SIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + +++ L + C YGI + H A D+ + +++K+ Sbjct: 122 EMLKKNKEYKGKNKKLQTACDYYGILNEN--AHRADSDTLATAKLFMKI 168 >gi|320160945|ref|YP_004174169.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea thermophila UNI-1] gi|319994798|dbj|BAJ63569.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea thermophila UNI-1] Length = 934 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 13/178 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGLD + D IIEIGAV + + + P + +L GIT++ Sbjct: 7 YVAIDIETTGLDPEKDCIIEIGAVRFSNRR-VEAEWSSLIKPT-KNIPSFITQLTGITND 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+ + + F N + HN +FD+ F+ + L + +IDT Sbjct: 65 MVRKAPTIQDVIGDLAHFVG--NCPIVGHNIRFDLSFLQKQH------ILWNNHVIDTYE 116 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A P+ SR +L L + GI + + H AL D+ + ++I ++ S++ Sbjct: 117 LASVLLPTASRYNLGVLAQSLGILLP--ATHRALDDARVTHALFIALLEKASELPVDL 172 >gi|145580424|pdb|2P1J|A Chain A, Crystal Structure Of A Polc-Type Dna Polymerase Iii Exonuclease Domain From Thermotoga Maritima gi|145580425|pdb|2P1J|B Chain B, Crystal Structure Of A Polc-Type Dna Polymerase Iii Exonuclease Domain From Thermotoga Maritima Length = 186 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 11/170 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGLD + D IIEIGAV+ + + + + P+ R+ S ++ ++ GIT E Sbjct: 14 FVVLDFETTGLDPQVDEIIEIGAVK-IQGGQIVDEYHTLIKPS-REISRKSSEITGITQE 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127 L++K S + EF F +++ +AHNA FD F+ +++ + D P IDTL Sbjct: 72 MLENKRSIEEVLPEFLGFL--EDSIIVAHNANFDYRFLRLWIKKVMGLDWERP--YIDTL 127 Query: 128 SIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMV 176 ++A+ L+S+ ++ G+ H H AL D+ + + V+++ + Sbjct: 128 ALAKSLLKLRSYSLDSVVEKLGLGPFRH---HRALDDARVTAQVFLRFVE 174 >gi|296333022|ref|ZP_06875479.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674874|ref|YP_003866546.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii str. W23] gi|296149873|gb|EFG90765.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413118|gb|ADM38237.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus subtilis subsp. spizizenii str. W23] Length = 954 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 92/184 (50%), Gaps = 9/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 I NK R +V D+ETTG K D+II+I AV + + T R F ++ PN + Sbjct: 22 ILMNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPAFIE 79 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GI+++ ++ + F ++ E + + A ++AHN FD+GF+ EL + L Sbjct: 80 QLTGISNQMVEHEQPFEAVAEEVFHLLD--GAYFVAHNIHFDLGFVKYELHKAGFH-LPD 136 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++DT+ ++R P L L + + + H H A D+ + ++++++ Sbjct: 137 CEVLDTVELSRIVFPGFEGYKLTELSEE--LQLRHDQPHRADSDAEVTGLIFLEILEKLR 194 Query: 180 QINF 183 Q+ + Sbjct: 195 QLPY 198 >gi|228996755|ref|ZP_04156392.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides Rock3-17] gi|228763074|gb|EEM11984.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides Rock3-17] Length = 930 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ DRI +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDRITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A +IAHN FD F+ EL++ ++ ID Sbjct: 62 DENLVKQAPLFCDVAPMVAELL--QGAYFIAHNVHFDWNFLKEELKQAGYGEVN-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 T+ +A+ P++ L L K++ + H H A D+ + ++++++ + ++ Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALVTAELFLQFLNQLEKLPL 175 >gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641] gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641] Length = 1463 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 418 LDLHEATYVVFDVETTGLSAIYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPISAFTTD 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +++ + EF +F Q+A +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVRNAKPLKQVLEEFQEFC--QDAVLVAHNATFDVGFMNANYERHGL-PKITQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|269963944|ref|ZP_06178254.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831319|gb|EEZ85468.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 204 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 11/182 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + N +V D ETTGL DR IEIGAV+++D + +FQ + P G + SP Sbjct: 1 MPQANS--VVVLDFETTGLSPNMGDRAIEIGAVKIVDG-EVVDSFQQLMNP-GFRVSPFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L+ PS + + F +F +N IAHNA FD F++AEL+RI+ Sbjct: 57 EGYTGITNNMLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERIDCG--Y 112 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L +ARR + L L + I H AL D+ + + +++ M+ Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDG-VFHRALADAQVTAKLWLLMVEEL 171 Query: 179 SQ 180 Q Sbjct: 172 EQ 173 >gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705] gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705] Length = 1444 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 17/219 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P G S + L ITD+ Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQ-FEEMIDP-GFPLSELTINLTHITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +F F F + A + HN FDVGF++ +R +D + +IDTL Sbjct: 479 MVHGSKSEEEVFRLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---------MVGG 178 ++R HP + + L++L K+Y +++ H H A +D+ + + M Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANVDAEATGYLLYALEKEAAKMYNMTKL 593 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 +Q+N E + K LF ++ Sbjct: 594 NQLNDRVGAGEAYKAARPSHAIVFAKTQAGLKNLFKLVS 632 >gi|256112396|ref|ZP_05453317.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] Length = 153 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 64/154 (41%), Positives = 94/154 (61%), Gaps = 2/154 (1%) Query: 90 QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149 A +AHNA FD+GFINAEL R+++ + I+DTL++ARRKHP N L++LCKRYG Sbjct: 1 DGARLVAHNAMFDLGFINAELARLDQAEITSEHIVDTLALARRKHPIGPNSLDALCKRYG 60 Query: 150 ITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT-VPNISLLKR 208 I SHR+ HGALLD+ +L++VYI+++ GG Q G + + + L R Sbjct: 61 IDNSHRTLHGALLDAQILAEVYIELI-GGKQTALGLTMESGSAGGDSRGNGSAPVVLAAR 119 Query: 209 DKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 +PL RI+ E H ++ +G A+W +Y+S Sbjct: 120 PRPLPPRISDAERAAHAALVEKMGDKAVWKKYLS 153 >gi|229016898|ref|ZP_04173826.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1273] gi|229023104|ref|ZP_04179618.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1272] gi|228738250|gb|EEL88732.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1272] gi|228744459|gb|EEL94533.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH1273] Length = 934 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+ EL++ + +D Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEVH-CPKVD 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++I+ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFIQFL 167 >gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO] gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO] Length = 1379 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 91/171 (53%), Gaps = 9/171 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I ++ R ++ DIETTGL IIEIGAV + + T+ F F+ P+ K + ++ Sbjct: 363 IEIDQERYVIVDIETTGLHPMFSEIIEIGAVAIENGQITDE-FHSFVKPS-EKLNAFTVQ 420 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 ITD+ L ++PS + +F +F ++ +AHNA FD F+ +++ K +P+ Sbjct: 421 FTKITDQMLANQPSIEEVLPKFMEFC--KDTTLVAHNANFDYRFLRYWIEKSLKLNWEPA 478 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVY 171 +IDTL++A++ S +L L + + SH H A D+ + + ++ Sbjct: 479 -VIDTLALAKKLVRLSSYNLEKLASHFKLGPFSH---HRASEDAKVTAKIF 525 >gi|291557938|emb|CBL35055.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum V10Sc8a] Length = 1605 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 90/169 (53%), Gaps = 11/169 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTGL N+RI EIGAV+L + +R F F+ P +L GITD+ Sbjct: 591 IIVFDIETTGLHPANERITEIGAVKLRNMEIVDR-FSTFVNP-MMPIPSNITELTGITDD 648 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ S+F F N+ AHNAKFDV FI + R+ K +P ++DTLS Sbjct: 649 MVADAPTEDVAVSDFMAFCG--NSPVCAHNAKFDVSFIRSAAARMEKSFDNP--VVDTLS 704 Query: 129 IARRKHPS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175 IA+ L+++ K + + H H A+ D+ +L +Y+ ++ Sbjct: 705 IAKAALKGIKNYKLDTIAKYFKLGDFDH---HRAVADAEMLCMIYMHIV 750 >gi|332670685|ref|YP_004453693.1| DNA polymerase III subunit epsilon [Cellulomonas fimi ATCC 484] gi|332339723|gb|AEE46306.1| DNA polymerase III, epsilon subunit [Cellulomonas fimi ATCC 484] Length = 620 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 16/221 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +V D+ETTG + I EIGAV++ FQ + P G P Sbjct: 36 TPLSDVTFVVVDLETTGGTPADCAITEIGAVKVRGGQVLGE-FQTLVDPGG-PVPPYIQV 93 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT L P ++ F +F +A +AHNA FDVGF+ A R P + Sbjct: 94 LTGITTSMLVGAPRIETVLPSFLEFAG--DAVLVAHNAPFDVGFLKAAAARTGH-PWPGN 150 Query: 122 RIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 R++DT+ +ARR + + + L++L + T++ H AL D+ DV ++ G Sbjct: 151 RVLDTVRLARRAVTRDEAPNHKLSTLAALFHATVT--PNHRALSDARATVDVLHALL--G 206 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 G ED T P + ++R + L + Sbjct: 207 RLGPLGVTHLEDLATA----TDPVPADVRRKRTLADGLPDA 243 >gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469] gi|255267960|gb|EET61165.1| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469] Length = 1010 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG+ SK D +IEI AV++ T F + P GRK P A +++GITD+ Sbjct: 25 YVVFDLETTGISSKYDEVIEISAVKVEAGQVTGE-FSTLVNP-GRKIPPAASRVNGITDK 82 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127 + FS + +F+ F + + HN FD+ F+ + ++ + + + +DTL Sbjct: 83 MVAGALPFSEVLGDFFAFAG--DFVLVGHNINSFDMKFLYRDAKKYFRK-VPDNDYVDTL 139 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR P S + L L + YGI S + H AL D H+ VY K+ Sbjct: 140 LLARAALPELSHHRLVDLAEHYGI--SAKGAHRALNDCHMNQKVYGKL 185 >gi|238060312|ref|ZP_04605021.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149] gi|237882123|gb|EEP70951.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149] Length = 604 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 101/255 (39%), Gaps = 25/255 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I EIGAV++ + + P G P L GIT Sbjct: 52 FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQA 109 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F +F +A +AHNA +DVGF+ A R +P R++DT + Sbjct: 110 MLVPAPPIEQVLPSFLEFVA--DAVLVAHNAPYDVGFLKAACARHGYRWPNP-RVLDTAA 166 Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +ARR L +L + + R H AL D+ DV ++ +GG +++ Sbjct: 167 LARRVLGRDEVPNRKLGTLASYF--RTATRPTHRALDDAKATVDVLHGLIARLGGHRVDT 224 Query: 184 GFKTNE-----------DRFFKEEKKTVPNISLLKR--DKPLFTRITKEELDEHDKTIQT 230 + E R + VP I + + D+PL+ + + Sbjct: 225 VGEAIEFARAVTPTQRRKRHLADGLPKVPGIYIFRAADDRPLYVGTSGDIATRVRSYFTA 284 Query: 231 LGKNAIWDRYISSNQ 245 K A +++ + Sbjct: 285 AEKRARMSEMLAAAE 299 >gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577] gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577] Length = 1438 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 11/205 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD ETTGL + DR+IE+ AV++ + + ++ F+ F+ P G S + Sbjct: 412 IPLKDATYVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQ-FEEFIDP-GFHLSEQTTN 469 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + S +F F DF ++A + HN FD+GF+N R P + Sbjct: 470 LTSITDEMVHGSKSEEEVFKLFRDFC--EDAIVVGHNVTFDIGFMNTGYVRHGM-PEIKN 526 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVG 177 IIDTL++AR +P+ R LN+L K++ + + H H A+ D+ +++K Sbjct: 527 PIIDTLTLARFLYPNMRGYRLNTLAKKFDVNLEHH--HRAIYDAETTGHLNYLFLKDAED 584 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPN 202 I + + N+ + K Sbjct: 585 RYGIVYHDELNDHMTENDAYKHARP 609 >gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 1438 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 11/205 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD ETTGL + DR+IE+ AV++ + + ++ F+ F+ P G S + Sbjct: 412 IPLKDATYVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQ-FEEFIDP-GFHLSEQTTN 469 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + S +F F DF ++A + HN FD+GF+N R P + Sbjct: 470 LTSITDEMVHGSKSEEEVFKLFRDFC--EDAIVVGHNVTFDIGFMNTGYVRHGM-PEIKN 526 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVG 177 IIDTL++AR +P+ R LN+L K++ + + H H A+ D+ +++K Sbjct: 527 PIIDTLTLARFLYPNMRGYRLNTLAKKFDVNLEHH--HRAIYDAETTGHLNYLFLKDAED 584 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPN 202 I + + N+ + K Sbjct: 585 RYGIVYHDELNDHMTENDAYKHARP 609 >gi|258511090|ref|YP_003184524.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477816|gb|ACV58135.1| DNA polymerase III, epsilon subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 240 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 93/237 (39%), Gaps = 15/237 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R ++ R +V D ETTGL R++E+ VE+ + + + P G PEA Sbjct: 1 MRLSEARFVVIDTETTGLPPDG-RVVELALVEVGLDREPQIVYSALVDP-GCPIPPEASA 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H ITD + KP I+ + + +A +AHNA+FD G + P Sbjct: 59 VHHITDRDVAGKPRLMQIWPKVMGYIG--DAILVAHNAEFDRGML----------PETGR 106 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 I + +A+ ++ L GI + H AL D+ + + V+ + + + Sbjct: 107 PWICSKRLAQHLWRDAPKHSNQVLRYWLGIDVEVGLPHRALGDAIVTAHVFQRELRAYLE 166 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIW 237 + F E V + K + + LD + +Q L + W Sbjct: 167 AGYPDDVEALIAFAESPIEVQTMPFGKHKGMPLKDVPLDYLDRALRNMQDLSPDLRW 223 >gi|291459111|ref|ZP_06598501.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291418365|gb|EFE92084.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 1517 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 9/175 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFDIETTG + D+IIEIGAV+L + +R VF+ P +L I D Sbjct: 493 VVFDIETTGFHPQTDKIIEIGAVKLREGKICDR-MDVFVNPEI-PIPFRITQLTSIDDSM 550 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + + + EF F +A +AHNA FD GFI +R+ ++DT+ + Sbjct: 551 VIGERTIEELLPEFLSFCG--DAVIVAHNADFDTGFIRENARRLGLSYDPT--VVDTVGL 606 Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +R P R L+++ K GI++ + H A+ D+ +++Y K + + Sbjct: 607 SRLLLPKLNRFKLDTVAKELGISLLNH--HRAVDDAEATAEIYQKELSLLRERGV 659 >gi|282890058|ref|ZP_06298591.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500064|gb|EFB42350.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 231 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 18/219 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + +D ETTG+ + D +IE+ + + RTF+ + P G PEA +H IT Sbjct: 1 MKALYYDTETTGIKADRDYVIELAVYDPVGN----RTFERLINP-GVPIPPEATAIHHIT 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIID 125 DE + + PSF I EF +F + + IAHN +FD+ F+ E +R N++ L P + +D Sbjct: 56 DEMVANAPSFGEIIEEFKEFCSG-DVVLIAHNNDQFDIHFLRNEFKRSNQE-LPPWKFLD 113 Query: 126 TLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 TL ARR ++ R+ L L YGI + + H AL D +L V+ M+ Sbjct: 114 TLKWARRYRNDLPRHTLQFLRGIYGI--AENNAHRALDDVIVLHQVFSAML-------DD 164 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 E + K + ++ K ++ + Sbjct: 165 LSIAEAYALMNQPKDIQHMPFGKHQGMPLKQVPASYIQW 203 >gi|288556130|ref|YP_003428065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus pseudofirmus OF4] gi|288547290|gb|ADC51173.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus pseudofirmus OF4] Length = 940 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D+ETTG +K DRII+IGAV + + R F F+ P + P +L GI Sbjct: 4 RFIVVDVETTGHSVAKGDRIIQIGAVVIENGEIIER-FASFVNPE-VEIPPFIEELTGIN 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ P+F + E F +N ++AHN FD+ F+ + + I + + DT Sbjct: 62 QAMVEHAPTFKELAVELLPLF--ENVGFVAHNVPFDLSFLKNQFELIG-EKFPKMKCYDT 118 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + ++R P L L + + +SH H A D+ + +++++ ++ + Sbjct: 119 VELSRMLLPKEESYKLGHLA--FSLGLSHDRPHQADSDAEVTAEIFLYLLNKLKGLPL 174 >gi|328470587|gb|EGF41498.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus 10329] Length = 204 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 11/179 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + N +V D ETTGL DR IEIGAV+L+D + +FQ + P G + S Sbjct: 1 MPQANS--VVVLDFETTGLSPTLGDRAIEIGAVKLVDG-EVVDSFQQLMNP-GFRVSSFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L+ PS + + F +F +N IAHNA FD F++AEL+RIN Sbjct: 57 ENYTGITNNMLRIAPSCEEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCG--Y 112 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +L +ARR + L L + I H AL D+ + + +++ M+ G Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDG-IFHRALADAQMTAKLWLLMVEG 170 >gi|291280248|ref|YP_003497083.1| hypothetical protein DEFDS_1873 [Deferribacter desulfuricans SSM1] gi|290754950|dbj|BAI81327.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 200 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 13/189 (6%) Query: 1 MIRKNKMR---KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRK 54 M N+++ V D ETTGL K R++EI AV L + +R F + P + Sbjct: 1 MKMNNEVKSYKFTVVDTETTGLSPYKGARLVEIAAVRLDEGLNIRLDRGFSTLINPK-KP 59 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 +A K+H I+DE +KD P+ + F + +N ++AHNA FD FI+ ++ Sbjct: 60 IPFQAYKIHKISDEMVKDAPTIEEVLPHFSKYV--ENTVFVAHNAPFDFKFIDYFYKKTG 117 Query: 115 KDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGI--TISHRSKHGALLDSHLLSDVY 171 + +IDTL ++RR P + L+SL + + I I+ +H A+ D+ + ++ Sbjct: 118 MNC-PLIAVIDTLKLSRRIIPGLKSYSLDSLIQHFNIKLKINGSYRHRAIYDALHTAIIF 176 Query: 172 IKMMVGGSQ 180 K++ SQ Sbjct: 177 KKLIEIESQ 185 >gi|150020931|ref|YP_001306285.1| DNA polymerase III PolC [Thermosipho melanesiensis BI429] gi|149793452|gb|ABR30900.1| DNA polymerase III, alpha subunit [Thermosipho melanesiensis BI429] Length = 1362 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 85/172 (49%), Gaps = 11/172 (6%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + VFD+ETTG ++K D IIEIGAV+ D N TF F+ P + S KL Sbjct: 338 MLDDVTYTVFDLETTGTNAKFDEIIEIGAVKYRDGKVIN-TFSSFVKPT-KSISEFTQKL 395 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GITDE +KD S +F EF F + +AHNA FD GFI +R+ LD Sbjct: 396 TGITDEMVKDAKSIEEVFPEFLKFID--GTVLVAHNADFDYGFIREVNRRLYNKELD-FA 452 Query: 123 IIDTLSIARRKHPS--SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVY 171 +DTL +++ L L + + + H H A D+ + +D++ Sbjct: 453 YLDTLKLSKVLLRGKVKSFGLGKLVEYFKLGPFKH---HRAFEDASVTADLF 501 >gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290] gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290] Length = 1438 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 11/205 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD ETTGL + DR+IE+ AV++ + + ++ F+ F+ P G S + Sbjct: 412 IPLKDATYVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQ-FEEFIDP-GFHLSEQTTN 469 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + S +F F DF ++A + HN FD+GF+N R P + Sbjct: 470 LTSITDEMVHGSKSEEEVFKLFRDFC--EDAIVVGHNVTFDIGFMNTGYVRHGM-PEIKN 526 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVG 177 IIDTL++AR +P+ R LN+L K++ + + H H A+ D+ +++K Sbjct: 527 PIIDTLTLARFLYPNMRGYRLNTLAKKFDVNLEHH--HRAIYDAETTGHLNYLFLKDAED 584 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPN 202 I + + N+ + K Sbjct: 585 RYGIVYHDELNDHMTENDAYKHARP 609 >gi|312143668|ref|YP_003995114.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus'] gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus'] Length = 1401 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 8/169 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL+ IIEIGAV++ K F+ F+ + + + ++ GI Sbjct: 388 FVVFDLETTGLNPSQHDIIEIGAVKIKAGEKIAE-FETFIDID-KNVPAKITEITGINTS 445 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F DF + +AHNA FD GF+ LQ++ + + ++DTL+ Sbjct: 446 MLTGAPKLKAAIERFIDFIG--DGVLVAHNADFDYGFLRTALQKLEINRKE-YTVLDTLA 502 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++R S+N LN+L + + + + H AL D+ +++ K++ Sbjct: 503 LSRALIKDSKNYKLNTLAEYFSVELDDH--HRALADADATAEILKKLLA 549 >gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952] gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952] Length = 1445 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 11/199 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE+ AV++ + +F F+ P G S + L GITDE Sbjct: 425 YVVFDVETTGLSAVYDTIIELAAVKMHKGN-VEASFDEFIDP-GHPLSNTTINLTGITDE 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S + F +F + A +AHNA FD+GF+N ++ P + +IDTL Sbjct: 483 MVRGSKSEEEVLRLFREF--SEGAVLVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLE 539 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGSQINFG 184 +AR +P R L L K++G+++ H A+ D+ + +++K + ++ Sbjct: 540 LARYLYPEFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMEHHKMFLH 597 Query: 185 FKTNEDRFFKEEKKTVPNI 203 N + + Sbjct: 598 EDLNRHVGGENSYRAARPF 616 >gi|116872751|ref|YP_849532.1| DNA polymerase III PolC [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466238|sp|A0AIC1|DPO3_LISW6 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116741629|emb|CAK20753.1| DNA polymerase III [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1444 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 11/192 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + Sbjct: 421 IGLQDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 478 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K + F ++ + +AHNA FD+GFIN +++ + D + Sbjct: 479 LTGITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAD-N 535 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL +AR +P + LN+L K++ I + H A+ D+ + + K++ + Sbjct: 536 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKE 593 Query: 181 ---INFGFKTNE 189 INF N+ Sbjct: 594 MHDINFHDSLND 605 >gi|291544892|emb|CBL18001.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp. 18P13] Length = 1444 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 10/170 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+FD+ETTGL ++ DR+ EIGA+++ + +F ++ P R PE L GI + Sbjct: 428 IIIFDVETTGLSAERDRLTEIGAIKVKNMR-VADSFHTYVNPE-RPIPPEITDLTGIHEG 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P S EF+ F ++ +AHNA+FD FI+A R + ID+L Sbjct: 486 MVAEAPKASQALKEFFAFCG-EDPVLVAHNARFDTSFIDAAAGRAGQRYA--YAYIDSLV 542 Query: 129 IARRKHPS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMV 176 + + P +++ LN + K + H H A D+ +L+ +Y++++ Sbjct: 543 LCQAMLPDLAKHKLNVVAKHLKLGKFDH---HRADNDAMMLAKIYLELVG 589 >gi|149001610|ref|ZP_01826583.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69] gi|147760068|gb|EDK67057.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69] Length = 1113 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|311030323|ref|ZP_07708413.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. m3-13] Length = 844 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 9/178 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K R +V D+ETTG KND+II++GAV + D R F F+ P P +L Sbjct: 2 KQRFVVLDLETTGNTPKKNDKIIQVGAVLIEDGEIVER-FASFVNPQCT-IPPFIEQLTN 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + + P+F+ I + + + +AHN FD+ F+ EL+ + Sbjct: 60 INQDMVGRAPTFAQIAPMLCEML--KGSSLVAHNVPFDLSFLQHELKTSGHPTFSGNT-F 116 Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 DT+ +AR P+ + L L Y ++H + H A D+ + +++K++ + Sbjct: 117 DTVELARILLPTQKSYKLTDLSIFY--ELNHDNPHRADSDAEATAIIFLKLLEKIKTL 172 >gi|221632241|ref|YP_002521462.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM 5159] gi|221156344|gb|ACM05471.1| DNA polymerase III, epsilon subunit [Thermomicrobium roseum DSM 5159] Length = 693 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 10/215 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL RIIEIGAV D R F V + P+ R+ ++L GI DE Sbjct: 86 FVALDVETTGLRPARHRIIEIGAVRYEDGCCVER-FSVLVNPH-RRLPVYIVRLTGIRDE 143 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L PSF + + F F E + I +N FD+ F+NAEL+RI + PL P+ +D L Sbjct: 144 DLLTAPSFVDVAAAFRVFLGE--STVIGYNVGFDLDFLNAELRRIGQGPL-PNPALDVLP 200 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR + R DL+++C+ I ++ ++H AL D+ + +Y+ ++ Q+ G+++ Sbjct: 201 LARALLTANGRYDLDAICR--SIGLARGTRHRALPDAEATAVLYLHLVERAEQV--GYRS 256 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELD 222 D ++T+ + + L R+ + + Sbjct: 257 PSDLQPAATRRTIVVEPVARGRAVLDQRLLADTPE 291 >gi|84385238|ref|ZP_00988270.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01] gi|84379835|gb|EAP96686.1| DNA polymerase III, alpha subunit [Vibrio splendidus 12B01] Length = 207 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 10/204 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + IV D ETTGL DR IEIGAV+L++ + TFQ + P G + S Sbjct: 1 MAPNSADSVIVLDFETTGLSPNMGDRAIEIGAVKLVNG-EVVDTFQQLMNP-GFRVSGFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GI++ L S S + EF DF Q ++ +AHNA FD F++AEL I +D Sbjct: 59 ESYTGISNRMLSTAASCSEVMDEFADFI--QGSQLVAHNASFDKRFLDAELDFIGRDY-- 114 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + ++ IARR + + L L + I + H AL DS + + +++ +M+ Sbjct: 115 TGKFACSMLIARRLIQDAPTHKLGDLVRFKNIDNDG-TFHRALADSEMTARLWL-LMIDE 172 Query: 179 SQINFGFKTNEDRFFKEEKKTVPN 202 Q + G + + ++ KT Sbjct: 173 LQSDHGIQQPSFQLMQKISKTAKG 196 >gi|308174031|ref|YP_003920736.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens DSM 7] gi|307606895|emb|CBI43266.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens DSM 7] gi|328552843|gb|AEB23335.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus amyloliquefaciens TA208] gi|328912360|gb|AEB63956.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens LL3] Length = 928 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 9/182 (4%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN + P +L Sbjct: 1 MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-QDIPPFIEQL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI+ ++++ F ++ E + + A ++AHN FD+GF+ EL + L Sbjct: 59 TGISTGMVENELPFEAVAEEIFHLLD--GAYFVAHNIHFDLGFVRHELSEAGYE-LTDCE 115 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DT+ ++R P L LC I H H A D+ + +++ ++ + Sbjct: 116 VLDTVELSRIVFPGFEGYKLGELCAELNIV--HDRPHRADSDAEVTGLIFLDILHKLKHL 173 Query: 182 NF 183 Sbjct: 174 PL 175 >gi|289423581|ref|ZP_06425382.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] gi|289156083|gb|EFD04747.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] Length = 174 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 11/172 (6%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K IV D+ETTGLD + IIEIG E+ T + + P G S L Sbjct: 7 KDEYIVVDLETTGLDPLQGHEIIEIGVTEIKKGDITLN-YSRLIKPKG-IISSFITNLTH 64 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I++E ++ + + + +F ++ ++ IAHNAKFD+ F+N L+++ +P+ I Sbjct: 65 ISNEMVEGEKTLEEVLPKFREYIG--DSVLIAHNAKFDIPFLNYYLEKMGLEPIKN--YI 120 Query: 125 DTLSIAR--RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 TL + + + +P + L++ C YGI H A D+H + +++K+ Sbjct: 121 CTLEMLKMNKMYPLKKKSLSAACDFYGIKNV--EAHRAYADTHATALLFLKI 170 >gi|154686487|ref|YP_001421648.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus amyloliquefaciens FZB42] gi|154352338|gb|ABS74417.1| DinG [Bacillus amyloliquefaciens FZB42] Length = 928 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 9/182 (4%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN P +L Sbjct: 1 MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPNQA-IPPFIEQL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI+ ++++ F ++ E + + A ++AHN FD+GF+ EL + L Sbjct: 59 TGISSGMVENELPFEAVAEEIFHLLD--GAYFVAHNIHFDLGFVRHELSEAGYE-LPDCE 115 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DT+ ++R P L LC I H H A D+ + V++ ++ + Sbjct: 116 VLDTVELSRIVFPGFEGYKLGELCAELNIV--HDRPHRADSDAEVTGLVFLDILHKLKHL 173 Query: 182 NF 183 Sbjct: 174 PL 175 >gi|307945225|ref|ZP_07660561.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium sp. TrichSKD4] gi|307771098|gb|EFO30323.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium sp. TrichSKD4] Length = 470 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 9/191 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 VFD ETTGL D I++IGAV +++ + P GR P + K+HGITD Sbjct: 278 FTVFDTETTGLMPNKDEIVQIGAVRVVNGKIVPGEVIDQLVDP-GRPIPPASTKVHGITD 336 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +K P + +F F +++ +AHNA FD+ F++ + + P I+DT+ Sbjct: 337 EMVKGAPDAVTSVQQFHTF--AKDSVIVAHNAPFDMAFLHRYGRESGLEWDHP--IMDTV 392 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++ + ++ + L++LC R G+TI +H AL D+ ++V ++ I+ G+K Sbjct: 393 LLSAVVYGTTEIHTLDALCDRLGVTIPVELRHTALGDAQATAEVLCHLLPIL--ISKGYK 450 Query: 187 TNEDRFFKEEK 197 T D + K Sbjct: 451 TFGDVLTQTRK 461 >gi|156975103|ref|YP_001446010.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116] gi|156526697|gb|ABU71783.1| hypothetical protein VIBHAR_02830 [Vibrio harveyi ATCC BAA-1116] Length = 204 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 11/182 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + N +V D ETTGL DR IEIGAV+++D + +FQ + P G + S Sbjct: 1 MPQANS--VVVLDFETTGLSPNMGDRAIEIGAVKIVDG-EVVDSFQQLMNP-GFRVSSFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L+ P+ + + F +F +N IAHNA FD F++AEL+RI Sbjct: 57 EGYTGITNNMLRTAPNCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERIGCG--Y 112 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L +ARR + L L + I H AL D+ + + +++ M+ Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDG-VFHRALADAQVTAKLWLLMVEEL 171 Query: 179 SQ 180 Q Sbjct: 172 EQ 173 >gi|171778812|ref|ZP_02919874.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282458|gb|EDT47882.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 1464 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I N+ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 419 IELNEATFVVFDVETTGLSAVNNDLIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTE 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD +++ + F DF Q+ +AHNA FDVGF+NA +R P+ Sbjct: 477 LTGITDNHVRNAKPIEEVLQMFQDFC--QDTVLVAHNATFDVGFMNANYERHGM-PIITQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ +++ H H A D+ + Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 582 >gi|77920206|ref|YP_358021.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380] gi|77546289|gb|ABA89851.1| DNA polymerase III subunit [Pelobacter carbinolicus DSM 2380] Length = 222 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 11/209 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+G+ + DR IEIGAV ++ +R FQ + P R S GI++ Sbjct: 20 VVLDFETSGMSPVQGDRAIEIGAVRIVGGQIADR-FQSLMNPGCR-ISSFIESFTGISNA 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + + + F DF +A +AHNA FD F++AELQRI++ +L Sbjct: 78 MVQAAPPATQVMAAFHDFIG--DAPLVAHNASFDRRFLDAELQRIDRC--RRQEFACSLL 133 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR +P S + L +L G+ + H AL D+ + + ++++M Q +GF Sbjct: 134 VARRVYPDSPNHKLATLVSYKGLP-TDGCFHRALADAEMTAHLWLRM-AADLQDAYGFSQ 191 Query: 188 NEDRFFKEEKKTVPN-ISLLKRDKPLFTR 215 + N ++ R++ L R Sbjct: 192 VPFALMSALARQKKNRVAAFLRERALEMR 220 >gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547] gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus sedentarius DSM 20547] Length = 584 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 14/203 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG S + I E GAV++ FQ + P P L GIT Sbjct: 27 FVVFDLETTGTSSADSEITEFGAVKVRGGEVVGE-FQTLVRP-AAGIPPYIQVLTGITTA 84 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + PS + F +F +A +AHNA+FD F+ +R + P + ++DT+ Sbjct: 85 MVSAAPSIEQVLPNFLEFVG--DAVLVAHNARFDTAFVRRACERTGR-PAPGNPVLDTVH 141 Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +AR+ P + L++L + + H AL D+ DV ++ + G Sbjct: 142 LARQLLPRPEVPNHKLSTLAAYFRAETT--PSHRALDDARATVDVLHGLIERVGPL--GV 197 Query: 186 KTNEDRFFKEEKKTVPNISLLKR 208 + E+ + VP KR Sbjct: 198 HSLEELLA--YSRHVPEARRRKR 218 >gi|310830408|ref|YP_003965509.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2] gi|309249875|gb|ADO59441.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2] Length = 311 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 11/170 (6%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V DIETTG K RIIE+ V++ + + F + P +K P+ +L GIT+ Sbjct: 26 YVVADIETTGFSPAKGGRIIEVAGVKIENGKIVDE-FNQLINPE-QKIYPKITELTGITN 83 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126 E + KP F + EF+ F +A ++AHN FD ++ +++ + + I T Sbjct: 84 EMVSGKPVFGQVLPEFYRFIG--DAVFVAHNKSFDWDRYLLHYFEKVGI--IADNASICT 139 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ P+ L +CK G+ I++ H AL DS L+ V+++ + Sbjct: 140 KILAKMYRPNLPAYGLEDICKDAGVQITNH--HRALDDSIALAHVFLRYL 187 >gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis OL] gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis OL] Length = 1402 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG DS+ ++IIEIGAV++ + T R F F+ P G K +L GI + Sbjct: 390 FVVVDVETTGFDSQKNKIIEIGAVKIENGQITER-FSTFVDPEG-KIPVRISELTGIYQD 447 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P EF F + +AHNA+FD+GF+ Q + IDTL Sbjct: 448 MVDKAPKLRDAILEFEKF--ASGSVLVAHNAQFDIGFLKKAYQECGI--IFDYTYIDTLE 503 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++RR S + LN + + + + H H A D+ + ++ +M + Sbjct: 504 LSRRLLTGLSSHKLNKVAEFLNVELRHH--HRADSDAETTAGIFTSLMERLKVRGY 557 >gi|304406903|ref|ZP_07388557.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus curdlanolyticus YK9] gi|304343890|gb|EFM09730.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus curdlanolyticus YK9] Length = 957 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 8/178 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D+ETTG ++ D +I+IG V L + TF F+ P P +L GIT Sbjct: 1 MKFAVLDLETTGHQAE-DEMIQIGIVMLDEELNVTDTFSSFVRP-ATDIPPFITQLTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + D PS + ++ +A +AHN FD F+N L R P R +DT Sbjct: 59 NEMVADAPSVEDVLTDVVKLLG--DAVLVAHNVGFDAHFMNRALDRCGYSPF-TGRRLDT 115 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + R +P+ L ++ + +GI +H KH A D+ + ++ + + Sbjct: 116 IDLLRMLYPTLPSYQLGAVSEAFGI--THERKHQADSDAEATAMLFAHCVHKLRDLPL 171 >gi|257452473|ref|ZP_05617772.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] gi|317059014|ref|ZP_07923499.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] gi|313684690|gb|EFS21525.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] Length = 1450 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 93/173 (53%), Gaps = 8/173 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K +V+D+ET G +S +IIEIGAV++++ +R F + P G+ + + Sbjct: 419 LEKASFVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDR-FSQLVNP-GQSIPQNIVDVT 476 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 ITD ++++P+ + +F DF + + +AHNA FD+G++ + ++ +PS Sbjct: 477 NITDSMVQNEPNIEEVLPKFLDFI--EGSILVAHNADFDIGYLKQQCKQQGYSDFNPS-F 533 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDTL +A+ +P + L L K+ G+++ + H A+ D ++++ + Sbjct: 534 IDTLQMAKDLYPELKQFGLGPLNKKLGLSLENH--HRAVDDCQATGNMFLIFL 584 >gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4] gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4] Length = 1446 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 11/206 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I ++ +VFD+ETTGL + + IIE+ AV++ + +F+ F+ P G S + Sbjct: 419 IELSEAIYVVFDVETTGLSAVYNSIIELSAVKMHKGNII-ESFEQFIDP-GHPLSQTTIN 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE + S + + F +F + +AHNA FD+GF+N + N P + Sbjct: 477 LTGITDEMVHGSKSEEEVLTLFKEFAGDH--ILVAHNASFDMGFLNTSNAKHNI-PDATN 533 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVG 177 +IDTL ++R HP + + LN+L K+YGI + H A+ DS +++K Sbjct: 534 PVIDTLELSRFLHPQYKSHRLNTLAKKYGINLEQH--HRAIFDSETTGQLCWLFLKEAKE 591 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNI 203 ++ + + NE + K Sbjct: 592 EHEMFYHDQLNEHIGEGDAYKRARPF 617 >gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30] gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10] gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30] gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10] Length = 1449 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 11/199 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL + D IIE+ AV + + +F F+ P G S ++L GITDE Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGN-VEASFDEFIDP-GHPLSRTTVELTGITDE 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S + F +F + A +AHNA FD+GF+N ++ P + +IDTL Sbjct: 481 MVRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLE 537 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGSQINFG 184 +AR +P R L L K++G+++ H A+ D+ + +++K + ++ Sbjct: 538 LARYLYPEFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMEKHEMLLH 595 Query: 185 FKTNEDRFFKEEKKTVPNI 203 + N + K Sbjct: 596 EELNRHVGGENSYKAARPF 614 >gi|52080748|ref|YP_079539.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus licheniformis ATCC 14580] gi|52786119|ref|YP_091948.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus licheniformis ATCC 14580] gi|319645294|ref|ZP_07999527.1| DinG protein [Bacillus sp. BT1B_CT2] gi|52003959|gb|AAU23901.1| ATP-dependent helicase [Bacillus licheniformis ATCC 14580] gi|52348621|gb|AAU41255.1| DinG [Bacillus licheniformis ATCC 14580] gi|317393103|gb|EFV73897.1| DinG protein [Bacillus sp. BT1B_CT2] Length = 930 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 9/182 (4%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 N R +V D+ETTG K DRII+I AV + + T R F ++ PN + +L Sbjct: 1 MNNQRYVVIDVETTGNSPKKGDRIIQIAAVVIENGQITER-FSKYVNPN-QPIPAFIEQL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI++E ++++ FS+I + ++ ++ +IAHN FD+ F+ ELQ ++ Sbjct: 59 TGISNEMVENEEPFSAIAEDIFELL--HDSCFIAHNIHFDLAFVKHELQLAGFGEIE-CS 115 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DT+ ++R P L L + I H + H A D+ + + +++ MM ++ Sbjct: 116 VLDTVELSRIVFPGFDGYKLTELSEELQIR--HENPHRADSDAEVTALIFLHMMDRLKRL 173 Query: 182 NF 183 Sbjct: 174 PI 175 >gi|310827165|ref|YP_003959522.1| DNA polymerase III PolC [Eubacterium limosum KIST612] gi|308738899|gb|ADO36559.1| DNA polymerase III PolC [Eubacterium limosum KIST612] Length = 1369 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 32/250 (12%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL D IIEI AV++ + + TF + P+ R P L GIT++ Sbjct: 354 FVFFDLETTGLIPGKDNIIEIAAVKIKNKHIVD-TFSKIVNPH-RPIPPFITNLTGITNQ 411 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D + F +F + +AHNAKFD+GF+ L + + + IDTL+ Sbjct: 412 MVEDGEEEEAAVKAFCEFCG--DLILVAHNAKFDMGFMEIALNAHHLE--NNITYIDTLA 467 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS-------- 179 ++R P+ ++++L L + + + H H AL DS + +++K+M Sbjct: 468 MSRTLIPTINKHNLKKLASYFKVDMGHH--HRALDDSVCSAKIFVKLMELAQKRDVEEVA 525 Query: 180 ---------QINFGFKTNEDRFFKEEKKTVPNISLLKRDK-----PLFTRITKEELDEHD 225 QI T + + + + ++ L + RI K L H Sbjct: 526 GLNGLMDVEQIIKSGDTYHIIIYAKNQAGLKDLYKLVSEAHINYFYRRPRIPKSLLAAHR 585 Query: 226 KTIQTLGKNA 235 + + +G Sbjct: 586 ENL-IIGSAC 594 >gi|257466340|ref|ZP_05630651.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] gi|315917497|ref|ZP_07913737.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] gi|313691372|gb|EFS28207.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 1450 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 93/173 (53%), Gaps = 8/173 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K +V+D+ET G +S +IIEIGAV++++ +R F + P G+ + + Sbjct: 419 LEKASFVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDR-FSQLVNP-GQSIPQNIVDVT 476 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 ITD ++++P+ + +F DF + + +AHNA FD+G++ + ++ +PS Sbjct: 477 NITDSMVQNEPNIEEVLPKFLDFI--EGSILVAHNADFDIGYLKQQCKQQGYSDFNPS-F 533 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDTL +A+ +P + L L K+ G+++ + H A+ D ++++ + Sbjct: 534 IDTLQMAKDLYPELKQFGLGPLNKKLGLSLENH--HRAVDDCQATGNMFLIFL 584 >gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20] gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20] Length = 1449 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 11/199 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL + D IIE+ AV + + +F F+ P G S ++L GITDE Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGN-VEASFDEFIDP-GHPLSRTTVELTGITDE 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S + F +F + A +AHNA FD+GF+N ++ P + +IDTL Sbjct: 481 MVRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLE 537 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGSQINFG 184 +AR +P R L L K++G+++ H A+ D+ + +++K + ++ Sbjct: 538 LARYLYPEFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMEKHEMLLH 595 Query: 185 FKTNEDRFFKEEKKTVPNI 203 + N + K Sbjct: 596 EELNRHVGGENSYKAARPF 614 >gi|210612665|ref|ZP_03289413.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787] gi|210151467|gb|EEA82475.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787] Length = 234 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 111/240 (46%), Gaps = 21/240 (8%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI+ +VFD+ETTGLD +ND IIEIGA+++ + T+R F FL P+ SP Sbjct: 1 MIKT----YVVFDLETTGLDVENDNIIEIGALKVREGKVTDR-FMEFLKPD-MPISPMIT 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + GIT+E +K+ ++ +F +F ++ + HN FD F+ + + Sbjct: 55 GITGITNEMVKNARDTKTVIRDFVNFC--EDHILVGHNIMFDYKFMKKYASQYGESF--E 110 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDTL IAR+ H L +LC+ Y I + + H A D+ + VY M Sbjct: 111 KKGIDTLKIARKVHKDLESKSLEALCEHYQIVNT--AAHRAYHDALATAKVYHMMAHYFE 168 Query: 180 QINFGFKTNEDRFFKEEK--------KTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 + E ++ +K KT LLK PL +IT+ E K I + Sbjct: 169 EKGPTVFEPEPLLYRPKKVQPITPKQKTYLESLLLKHPFPLEKQITELTRSEASKIIDRI 228 >gi|193212860|ref|YP_001998813.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327] gi|193086337|gb|ACF11613.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB 8327] Length = 208 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 10/189 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M R + +V D ETTGL + DR IEIGAV L + +R FQ + P G + SP Sbjct: 1 MQRASADSVVVLDFETTGLSPQYGDRAIEIGAVLLENGVIVDR-FQRLMNP-GFRISPFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+E LK +P + + F DF N +AHNA FD F++ EL+R + Sbjct: 59 ESYTGITNEMLKVEPPCEEVMAGFSDFIAGHN--IVAHNASFDRRFLDFELKRARRAYEG 116 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L ++RR + + L +L GI S H AL D+ + + +++ M+ Sbjct: 117 DC--CCSLLLSRRIYQDAPNHKLQTLVNHAGIP-KVGSFHRALADAEMTAHLWLSMIDRI 173 Query: 179 SQINFGFKT 187 Q ++G + Sbjct: 174 RQ-HYGVQA 181 >gi|320528407|ref|ZP_08029569.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204] gi|320131321|gb|EFW23889.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204] Length = 1449 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 55/174 (31%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + I FD+ETTGL D IIE GAV + + + +R Q+F+ P Sbjct: 388 NLDDVTYISFDLETTGLSCYFDHIIEFGAVRIKNSTIIDRK-QLFIKPP-VSIPGFITSK 445 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 IT++ +K+ F+ E D+ + +AHNA FD F+N EL+RI + PL + Sbjct: 446 TNITNDMVKNAKPFAEAIDEILDYIKDD--VLVAHNATFDYYFLNEELRRIGRKPL-TNV 502 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +IDTL ++R P R L +L + Y + + H A D+ L+DV++ ++ Sbjct: 503 VIDTLDMSRAVLPDRRAYRLGNLSRYYHVNYNEEEAHRADFDAGALADVFLCLL 556 >gi|257463693|ref|ZP_05628083.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] gi|317061240|ref|ZP_07925725.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] gi|313686916|gb|EFS23751.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] Length = 1450 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 104/211 (49%), Gaps = 10/211 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K +V+D+ET G +S +IIEIGAV++++ +R F + P G+ + + Sbjct: 418 ELEKASFVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDR-FSQLINP-GQSIPQNIVDV 475 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 ITD ++++P + F +F + + +AHNA FD+G++ + ++ +P+ Sbjct: 476 TNITDSMVQNEPKLEEVLPNFLEFI--RGSILVAHNADFDIGYLKQQCKKYGYSDFNPA- 532 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ- 180 IDTL +A+ +P + L L K+ G+ + + H A+ D ++++ + + Sbjct: 533 FIDTLQMAKDLYPELKQFGLGPLNKKLGLYLENH--HRAVDDCQATGNMFLIFLDKYLER 590 Query: 181 -INFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 I + E +K+ NI LL +++ Sbjct: 591 GITKLSEMQEAFPVNTKKQNTRNIMLLAKNR 621 >gi|167750041|ref|ZP_02422168.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702] gi|167657062|gb|EDS01192.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702] Length = 1605 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 89/169 (52%), Gaps = 11/169 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFDIETTGL N+RI EIGAV+L + R F F+ P +L GITD+ Sbjct: 591 IIVFDIETTGLHPANERITEIGAVKLRNMEIVER-FSTFVNP-MMPIPSNITELTGITDD 648 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ S+F F N+ AHNAKFDV FI + R+ K +P ++DTLS Sbjct: 649 MVADAPTEDVAVSDFMAFCG--NSPVCAHNAKFDVSFIRSAAARMEKSFDNP--VVDTLS 704 Query: 129 IARRKHPS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMM 175 IA+ L+++ K + + H H A+ D+ +L +Y+ ++ Sbjct: 705 IAKAALKGIKNYKLDTIAKYFKLGDFDH---HRAVADAEMLCMIYMHIV 750 >gi|56963828|ref|YP_175559.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus clausii KSM-K16] gi|56910071|dbj|BAD64598.1| ATP-dependent DNA helicase DinG [Bacillus clausii KSM-K16] Length = 942 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 102/218 (46%), Gaps = 14/218 (6%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG + ++I+IGAV++ + T+R F F+ P G P +L GITD Sbjct: 5 FVVIDLETTGNSPDQGAKMIQIGAVKVEGCTITDR-FSTFVDP-GCSIPPFITELTGITD 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++ P F I ++ F + + +AHN FD GF+ A+L+ L DT+ Sbjct: 63 KDVEGAPVFREIATDLLAFM--EGSSLVAHNVPFDKGFLEAQLETEGLR-LPKCCQFDTV 119 Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++R P L+ L + + H H A D+ + ++++IK++ ++ Sbjct: 120 ELSRVLLPTQESYKLSELSS--SLDMDHDRPHRADSDAEITAELFIKLLHKLERLPL--- 174 Query: 187 TNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELD 222 + K + +L R + + ++ ++E + Sbjct: 175 VTLQSLEQVAKGLKSDWDVLTRPLIQKKWMKVDEDERE 212 >gi|291542732|emb|CBL15842.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus bromii L2-63] Length = 1452 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FDIETTGL + D+I EIGAV++ + T+ TF F P + +L GITD+ Sbjct: 435 FICFDIETTGLSAARDKITEIGAVKVENGVITD-TFSTFANPE-MPIPQKITQLTGITDD 492 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD PS S F +F + +AHNA FD FI + + ++ IDT++ Sbjct: 493 MVKDAPSQSEAVGAFLEFAGDN--VLVAHNAPFDTSFIAKACEDMGRE--YNYTSIDTVA 548 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I+R +N L+++ K + + + H A D+ +L+ ++I + Sbjct: 549 ISRAILTDIKNCKLDTVAKF--LRLGDFNHHRATDDAEMLARIFINL 593 >gi|237649657|ref|ZP_04523909.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974] gi|237821357|ref|ZP_04597202.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974M2] Length = 1463 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|322392646|ref|ZP_08066106.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780] gi|321144638|gb|EFX40039.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780] Length = 1463 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNIIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F Q+ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLKQVLQEFQEFC--QDTVLVAHNATFDVGFMNANYERHGL-PKITQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 581 >gi|219667072|ref|YP_002457507.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense DCB-2] gi|219537332|gb|ACL19071.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense DCB-2] Length = 1447 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 11/194 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG + ++I EIG +++ ++ F F+ P + +++ ITD+ Sbjct: 424 YCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQ-FGCFVNPE-KPIPARVVEVTNITDD 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D + +F + +F + + +AHNA FD+GF+ + + D +DTLS Sbjct: 482 MVRDAETIDQVFPKILNFI--EGSVLVAHNADFDMGFLKHNAKVLGYDF--DYTYLDTLS 537 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P + L + K GI + H AL D V+ M+ + G +T Sbjct: 538 LAKELFPDYKTYKLGRIAKNLGIKVE--VAHRALDDVGTTVKVFNIMVDMLKER--GVET 593 Query: 188 NEDRFFKEEKKTVP 201 ED K + Sbjct: 594 LEDIDLKAADEAAR 607 >gi|148994700|ref|ZP_01823804.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68] gi|168489751|ref|ZP_02713950.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP195] gi|147927100|gb|EDK78140.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68] gi|183571799|gb|EDT92327.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP195] gi|332075131|gb|EGI85601.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA17570] Length = 1463 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|167624226|ref|YP_001674520.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis HAW-EB4] gi|167354248|gb|ABZ76861.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis HAW-EB4] Length = 213 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 100/204 (49%), Gaps = 12/204 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL + DR IEIGAV L D +R FQ + P G + S GI++E Sbjct: 17 IVLDFETTGLSPNQGDRAIEIGAVMLKDGKVIDR-FQQLMNP-GFRVSGFIENYTGISNE 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D S ++ ++F DF + N +AHNA FD F++AEL R+N + P + ++ Sbjct: 75 MLSDAKSCETVMTQFADFIGDYN--LVAHNASFDQRFLDAELSRVNCNY--PGQFACSML 130 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS---QINFG 184 IARR + + L SL I H AL DS + +D+++ M+ + QI Sbjct: 131 IARRLYQDAPNHKLGSLIHYKNIQ-HDGVFHRALADSEMTADLWLVMLEDLNADYQIKRA 189 Query: 185 FKTNEDRFFKEEKKTVPNISLLKR 208 + K+ K +V +R Sbjct: 190 DFSLLQAIAKQSKASVSQYLARQR 213 >gi|332203439|gb|EGJ17506.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA47368] Length = 1463 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|168490797|ref|ZP_02714940.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC0288-04] gi|225853872|ref|YP_002735384.1| DNA polymerase III PolC [Streptococcus pneumoniae JJA] gi|183574875|gb|EDT95403.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC0288-04] gi|225723163|gb|ACO19016.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae JJA] Length = 1463 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNAAFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|89897057|ref|YP_520544.1| hypothetical protein DSY4311 [Desulfitobacterium hafniense Y51] gi|89336505|dbj|BAE86100.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1447 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 11/194 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG + ++I EIG +++ ++ F F+ P + +++ ITD+ Sbjct: 424 YCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQ-FGCFVNPE-KPIPARVVEVTNITDD 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D + +F + +F + + +AHNA FD+GF+ + + D +DTLS Sbjct: 482 MVRDAETIDQVFPKILNFI--EGSVLVAHNADFDMGFLKHNAKVLGYDF--DYTYLDTLS 537 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P + L + K GI + H AL D V+ M+ + G +T Sbjct: 538 LAKELFPDYKTYKLGRIAKNLGIKVE--VAHRALDDVGTTVKVFNIMVDMLKER--GVET 593 Query: 188 NEDRFFKEEKKTVP 201 ED K + Sbjct: 594 LEDIDLKAADEAAR 607 >gi|225374652|ref|ZP_03751873.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM 16841] gi|225213511|gb|EEG95865.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM 16841] Length = 228 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTG D +IEI AV++ K F + P R A ++ I+DE Sbjct: 17 YVLFDLETTGTSCIYDEVIEISAVKVR-SGKVVEEFSQLVNPK-RPIPYAASMVNHISDE 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++P F + EF F + + HN FD+ F+ + +R+ + L + +DTL Sbjct: 75 MVANEPDFGQVLPEFLTFAGDD--ILVGHNIQTFDMKFLYRDCERLFQQKL-TNDYVDTL 131 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A+ P R+ L+ L + YGI S R H AL D + V+ + Sbjct: 132 RVAKLCFPEWRHRRLSDLAEHYGI--STRGAHRALTDCKMNQQVFEYL 177 >gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755] gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755] Length = 1449 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 11/199 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL + D IIE+ AV + + +F F+ P G S ++L GITDE Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGN-VEGSFDEFIDP-GHPLSRTTVELTGITDE 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S + F +F + A +AHNA FD+GF+N ++ P + +IDTL Sbjct: 481 MVRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLE 537 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGSQINFG 184 +AR +P R L L K++G+++ H A+ D+ + +++K + + Sbjct: 538 LARYLYPEFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMEKHDMLLH 595 Query: 185 FKTNEDRFFKEEKKTVPNI 203 N + K Sbjct: 596 EDLNRHVGGENSYKAARPF 614 >gi|163802995|ref|ZP_02196881.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4] gi|159173169|gb|EDP57998.1| DNA polymerase III, alpha subunit [Vibrio sp. AND4] Length = 209 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 11/185 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + N +V D ETTGL DR IEIGAV+++D + +FQ + P G + S Sbjct: 1 MPQANS--VVVLDFETTGLSPNMGDRAIEIGAVKIVDG-EVVDSFQQLMNP-GFRVSSFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L+ PS + + F +F +N IAHNA FD F++AEL+RIN Sbjct: 57 EGYTGITNNMLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINLG--Y 112 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L +ARR + L L + I H AL D+ + + +++ M+ Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDG-VFHRALADAQVTARLWLLMVEEL 171 Query: 179 SQINF 183 Q+ Sbjct: 172 EQLGI 176 >gi|16800425|ref|NP_470693.1| DNA polymerase III PolC [Listeria innocua Clip11262] gi|21263558|sp|Q92C34|DPO3_LISIN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|16413830|emb|CAC96588.1| polC [Listeria innocua Clip11262] gi|313619136|gb|EFR90925.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria innocua FSL S4-378] Length = 1444 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 93/175 (53%), Gaps = 8/175 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + +F ++ + +AHNA FD+GFIN +++ + + ++DTL Sbjct: 486 MVKGSDPIDVVLKQFREWSGDD--ILVAHNASFDMGFINTAYEKVGLEKA-KNAVVDTLE 542 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +AR +P + LN+L K++ I + H A+ D+ + + K++ +++ Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 595 >gi|315302974|ref|ZP_07873694.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria ivanovii FSL F6-596] gi|313628654|gb|EFR97067.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria ivanovii FSL F6-596] Length = 1452 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 8/182 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + Sbjct: 429 ILLKDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 486 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K + F ++ + +AHNA FD+GFIN +++ P + Sbjct: 487 LTGITDDMVKGSDPIDVVLQRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAEN 543 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL +AR +P + LN+L K++ I + H A+ D+ + + K++ + Sbjct: 544 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKE 601 Query: 181 IN 182 ++ Sbjct: 602 MH 603 >gi|306832698|ref|ZP_07465835.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338] gi|304425154|gb|EFM28283.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338] Length = 1464 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I N+ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 419 IELNEATYVVFDVETTGLSAVNNDLIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTE 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD +++ + F +F Q+ +AHNA FDVGF+NA +R P+ Sbjct: 477 LTGITDNHVRNAKPIEEVLQMFQNFC--QDTVLVAHNATFDVGFMNANYERHGM-PIITQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ +++ H H A D+ + Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 582 >gi|86145733|ref|ZP_01064062.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222] gi|218676919|ref|YP_002395738.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32] gi|85836432|gb|EAQ54561.1| DNA polymerase III, alpha subunit [Vibrio sp. MED222] gi|218325187|emb|CAV27099.1| DNA polymerase III, alpha subunit [Vibrio splendidus LGP32] Length = 207 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 10/204 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + IV D ETTGL DR IEIGAV+L++ + TFQ + P G + S Sbjct: 1 MAPNSADSVIVLDFETTGLSPNMGDRAIEIGAVKLVNG-EVVDTFQQLMNP-GFRVSGFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GI++ L S S + EF +F Q ++ +AHNA FD F++AEL I +D Sbjct: 59 ESYTGISNRMLSTAASCSEVMDEFANFI--QGSQLVAHNASFDKRFLDAELDFIGRDY-- 114 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + ++ IARR + + L L + I + H AL DS + + +++ +M+ Sbjct: 115 TGKFACSMLIARRLIQDAPTHKLGDLVRFKNIDNDG-TFHRALADSEMTARLWL-LMIDE 172 Query: 179 SQINFGFKTNEDRFFKEEKKTVPN 202 Q + G + + ++ KT Sbjct: 173 LQSDHGIQQPSFQLMQKISKTAKG 196 >gi|257458230|ref|ZP_05623380.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580] gi|257444340|gb|EEV19433.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580] Length = 216 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 95/168 (56%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD ETTGLD RI+EIGAV+ D + V + P EA K++GITDE Sbjct: 16 FIAFDTETTGLDPAAGRIVEIGAVKF-DRRGIAARYNVLINPEI-PMPEEAGKVNGITDE 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKDKP +++F +F+DF +AHNA FD+ +INAEL+RI K PL ++++DT Sbjct: 74 MLKDKPLIAAVFPDFFDFIGTG--VLVAHNAPFDINYINAELKRIGKSPLG-NKVVDTRI 130 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+ P S L L ++GI + H A D+ + +++ K++ Sbjct: 131 FAKEVFPGLSSYALQDLAVQFGI--TALEAHRAEDDARVCMELFDKIL 176 >gi|23099217|ref|NP_692683.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Oceanobacillus iheyensis HTE831] gi|22777446|dbj|BAC13718.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831] Length = 939 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 9/178 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTG KND+IIEIG V +++ + T F P G+ P L GI+ Sbjct: 3 RFVVIDLETTGHAPSKNDKIIEIGMV-IIEGDEIIDTKTTFFNP-GQPIPPFITNLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ + D P F+ +++ IAHN FD+GF+NAEL+ D L ++++DT Sbjct: 61 DDDVADAPLFTEKALSIKSIL--EDSYIIAHNVNFDLGFLNAELKENGIDRLH-NQVLDT 117 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + ++R P++ L+ L + + H H AL D+++ + ++ K+M +Q+ + Sbjct: 118 VELSRILFPTAPGYKLSQLSDHFNLQ--HDDPHRALSDAYVTAKLFQKLMDKINQLPY 173 >gi|15614254|ref|NP_242557.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus halodurans C-125] gi|10174308|dbj|BAB05410.1| ATP-dependent DNA helicase [Bacillus halodurans C-125] Length = 942 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 9/164 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V DIETTG ++ DRIIEIGAV +++ + +F + P R P +L GI+ Sbjct: 4 RFVVIDIETTGQSVAQGDRIIEIGAV-VIEDEEAVESFCTLVNPE-RSIPPFIEELTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE +K P+F E + ++AHN FD+ F+ L+ PL IIDT Sbjct: 62 DEMVKGAPTFHQCIPELMSML--EGGVFVAHNVHFDLSFLQKLLEHEGYGPLLV-PIIDT 118 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R P L++L ++ G + H + H A D+ + +D Sbjct: 119 VELSRILLPTEESYKLSALTEQLG--LEHENPHRADSDAKVTAD 160 >gi|294677643|ref|YP_003578258.1| PAS domain/exonuclease domain-containing protein [Rhodobacter capsulatus SB 1003] gi|6014992|sp|O68045|DPO3E_RHOCA RecName: Full=DNA polymerase III subunit epsilon-like protein gi|3128279|gb|AAC16131.1| DNA polymerase III alpha chain [Rhodobacter capsulatus SB 1003] gi|294476463|gb|ADE85851.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB 1003] Length = 704 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 8/177 (4%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEA 59 +K+ +VFD ETTGL D I++I AV +++ + F + P GR + Sbjct: 503 TPLDKLTFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNP-GRPIPAAS 561 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGIT+ + P+ + + F F + A +AHNA FD+ F+ + I K+ + Sbjct: 562 TAVHGITEAMVATAPAIAEVGRRFHKF--AEGAVLVAHNAPFDLEFLRRKELLIGKNFDN 619 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P ++DT+ ++ ++ + L++L R GITI ++H AL D+ ++ +++++ Sbjct: 620 P--VLDTVLLSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRLL 674 >gi|218282259|ref|ZP_03488558.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989] gi|218216727|gb|EEC90265.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989] Length = 525 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 10/172 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FD+ETTGLDSK DRIIE+GA+ + T T+ + P K S EA ++ IT+ Sbjct: 51 RYVAFDVETTGLDSKKDRIIEVGAILFENGH-TVETYSSLVNPE-VKISKEATTINHITN 108 Query: 68 EFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +K P+ + E F + + AHNA FD+ F++ L R D + Sbjct: 109 GMVKKAPTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDA--QILCL 166 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTLS++R+ P S ++ K + I ++ +H A+ D+ + ++ K++ Sbjct: 167 DTLSLSRKIIPGLSNYKQTTVAKHFNIK--NKQEHRAISDAEVCGEILWKLL 216 >gi|149017968|ref|ZP_01834427.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72] gi|147931532|gb|EDK82510.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72] Length = 1463 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2] gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2] Length = 1449 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 8/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL + D IIE+ AV + + +F F+ P G S ++L GITDE Sbjct: 423 YIVFDVETTGLSAVYDTIIELAAVRMHKGN-VEGSFDEFIDP-GHPLSRTTVELTGITDE 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S + F +F + A +AHNA FD+GF+N ++ P + +IDTL Sbjct: 481 MVRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGI-PEAENPVIDTLE 537 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +AR +P R L L K++G+++ H A+ D+ + Sbjct: 538 LARYLYPEFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHL 578 >gi|327468385|gb|EGF13870.1| DNA polymerase III PolC [Streptococcus sanguinis SK330] Length = 1462 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|148983680|ref|ZP_01816999.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|147923827|gb|EDK74939.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|301799415|emb|CBW31952.1| DNA polymerase III PolC-type [Streptococcus pneumoniae OXC141] Length = 1463 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|322377559|ref|ZP_08052049.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M334] gi|321281324|gb|EFX58334.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M334] Length = 1463 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M] gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M] Length = 1571 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D+IIEI V++ +K FQ F+ P +K + + ITDE Sbjct: 481 YVVFDLETTGLSNVRDKIIEIAGVKIKKGNKIGE-FQKFIDPQ-QKLTKTITDITNITDE 538 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ + + + +F F ++ +AHNA FD+ F+ + + + L+P IIDT++ Sbjct: 539 MLQGQQTIDQVLPQFLAF--AKDCVLVAHNASFDINFLKEKAKELKIS-LEPQPIIDTMA 595 Query: 129 IARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++R + L L + + + H AL D+ ++++IKM+ Sbjct: 596 LSQRYFSNLLKYFSLKRLATFFKVKLEDH--HRALADATATAEIFIKMI 642 >gi|324989747|gb|EGC21690.1| DNA polymerase III PolC [Streptococcus sanguinis SK353] Length = 1462 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 1437 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 9/183 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P G S + L ITD+ Sbjct: 414 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDP-GFPLSELTINLTHITDD 471 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +F F F + A + HN FDVGF++ +R +D + +IDTL Sbjct: 472 MVHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 528 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R HP + + L++L K+Y +++ H H A D+ + + +++ +G T Sbjct: 529 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANADAEATGYLLYALEKEAAKM-YGMTT 585 Query: 188 NED 190 Sbjct: 586 LNQ 588 >gi|332365112|gb|EGJ42875.1| DNA polymerase III PolC [Streptococcus sanguinis SK1059] Length = 1462 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|303238571|ref|ZP_07325105.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2] gi|302593969|gb|EFL63683.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2] Length = 1446 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 9/207 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG ++I E+G ++L D ++ F F+ P + +++ ITD Sbjct: 423 YCVLDLETTGFSPLTEKITEVGIMKLKDGKVIDQ-FSCFVNPE-KPIPARVVEVTNITDY 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D + +F + +F + + +AHNA+FD+GF+ + + + +DTLS Sbjct: 481 MVQDAETIEKVFPKMLEFI--EGSVLVAHNAEFDIGFLKHNAKVLGYNF--DFTYLDTLS 536 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P + L + K GI + H AL D V+ M+ + Sbjct: 537 LAKEIFPDYKSYKLGRIAKNLGIKVD--VAHRALDDVDTTVKVFNIMLEKLKEKGVQTLE 594 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFT 214 + D + +E+ LK + Sbjct: 595 DVDTYSSDEEAKKSEYKKLKTYHAIIL 621 >gi|294678385|ref|YP_003579000.1| PAS domain/exonuclease domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294477205|gb|ADE86593.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB 1003] Length = 704 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 8/177 (4%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEA 59 +K+ +VFD ETTGL D I++I AV +++ + F + P GR + Sbjct: 503 TPLDKLTFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNP-GRPIPAAS 561 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +HGIT+ + P+ + + F F + A +AHNA FD+ F+ + I K+ + Sbjct: 562 TAVHGITEAMVATAPAIAEVGRRFHKF--AEGAVLVAHNAPFDLEFLRRKELLIGKNFDN 619 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P ++DT+ ++ ++ + L++L R GITI ++H AL D+ ++ +++++ Sbjct: 620 P--VLDTVLLSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRLL 674 >gi|229544028|ref|ZP_04433087.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans 36D1] gi|229325167|gb|EEN90843.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans 36D1] Length = 930 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 9/177 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG +K DRII+ AV +++ + F F+ P + P +L GI Sbjct: 2 QRYVVVDLETTGNSAKKGDRIIQFSAV-VVEGREIKTQFTSFVNPE-KPVPPFISELTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + L++ P FS I + +++ ++AHN FD+ F+ EL+ P +D Sbjct: 60 DNGMLEEAPVFSEIAPRIMEIL--EDSIFVAHNVLFDLPFLQQELKAAGFPPF-RGPSLD 116 Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 T+ +R P+ L L +++ H H A D+ + + + + M + + Sbjct: 117 TVEFSRIAFPTLNSYKLGDLAD--SLSLYHERPHRADSDAFVTAKLLLACMEKCASL 171 >gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC 700633] gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC 700633] Length = 1441 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 11/198 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I +VFD+ETTGL + D IIE+ AV++ + ++ F+ F+ P G S ++ Sbjct: 419 ILLEDATYVVFDVETTGLSAIYDSIIELAAVKMHKGNVIDK-FEEFIDP-GHPLSATTIQ 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ ++ S + + EF F ++ +AHNA FD+GF+N ++ + Sbjct: 477 LTGITDDMVRGSKSQAQVLKEFAAF--TKDTILVAHNASFDMGFLNTGYEKEGLEK-TTQ 533 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVG 177 +IDTL ++R HP + + LN+L KRY + + H A+ DS + ++K Sbjct: 534 PVIDTLELSRLLHPHLKSHRLNTLAKRYNVALEQH--HRAVFDSETTGHLCHIFLKEAAN 591 Query: 178 GSQINFGFKTNEDRFFKE 195 + + + N + +E Sbjct: 592 DHGLIYHDQLNTNLHPEE 609 >gi|303259383|ref|ZP_07345360.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293] gi|303261138|ref|ZP_07347087.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292] gi|303263466|ref|ZP_07349389.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397] gi|303265758|ref|ZP_07351656.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457] gi|303267811|ref|ZP_07353613.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458] gi|302637975|gb|EFL68461.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292] gi|302639317|gb|EFL69775.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293] gi|302642507|gb|EFL72852.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458] gi|302644666|gb|EFL74915.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457] gi|302647239|gb|EFL77463.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397] Length = 1463 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|325695495|gb|EGD37395.1| DNA polymerase III PolC [Streptococcus sanguinis SK150] Length = 1462 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|325688979|gb|EGD30987.1| DNA polymerase III PolC [Streptococcus sanguinis SK115] Length = 1462 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334] gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus casei ATCC 334] Length = 1444 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 9/183 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P G S + L ITD+ Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDP-GFPLSELTINLTHITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +F F F + A + HN FDVGF++ +R +D + +IDTL Sbjct: 479 MVHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R HP + + L++L K+Y +++ H H A D+ + + +++ +G T Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANADAEATGYLLYALEKEAAKM-YGMTT 592 Query: 188 NED 190 Sbjct: 593 LNQ 595 >gi|328944876|gb|EGG39036.1| DNA polymerase III PolC [Streptococcus sanguinis SK1087] Length = 1462 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|323350531|ref|ZP_08086193.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66] gi|322123213|gb|EFX94898.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66] Length = 1462 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23] gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23] gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus casei LC2W] gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus casei BD-II] Length = 1444 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 9/183 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P G S + L ITD+ Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDP-GFPLSELTINLTHITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +F F F + A + HN FDVGF++ +R +D + +IDTL Sbjct: 479 MVHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R HP + + L++L K+Y +++ H H A D+ + + +++ +G T Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANADAEATGYLLYALEKEAAKM-YGMTT 592 Query: 188 NED 190 Sbjct: 593 LNQ 595 >gi|27367395|ref|NP_762922.1| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6] gi|27358964|gb|AAO07912.1| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6] Length = 204 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 88/178 (49%), Gaps = 11/178 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + N +V D ETTGL DR IEIGAV+++D + +FQ + P G + S Sbjct: 1 MPQANS--VVVLDFETTGLSPNLGDRAIEIGAVKIVDG-EVVDSFQQLMNP-GFRVSSFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L+ PS + + F +F +N IAHNA FD F++AEL+RIN D Sbjct: 57 ESYTGITNNMLRSAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDAELERINCD--Y 112 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +L +ARR + L L + I H AL D+ + + +++ M+ Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIDNDG-IFHRALADAQMTAKLWLLMVE 169 >gi|307707703|ref|ZP_07644182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis NCTC 12261] gi|307616201|gb|EFN95395.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis NCTC 12261] Length = 1463 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|258611758|ref|ZP_05711628.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503] gi|258605945|gb|EEW18553.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503] Length = 1144 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 128 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 185 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL Sbjct: 186 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 242 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186 +AR +P + LN+L K++ I + H A+ D+ + + K++ ++ N F Sbjct: 243 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 300 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 + + + E KR +P Sbjct: 301 DSLNDYMGEGDAY-------KRARP 318 >gi|325697436|gb|EGD39322.1| DNA polymerase III PolC [Streptococcus sanguinis SK160] Length = 1462 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|229825431|ref|ZP_04451500.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC 49176] gi|229789994|gb|EEP26108.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC 49176] Length = 223 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTG+ + D++IEI A+++ + F + P R A +++GITDE Sbjct: 17 YTVFDLETTGVSPQTDKVIEISAIKVRNGQTVGE-FSSLVNP-MRGIPYGATRVNGITDE 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTL 127 + DKP F + +F DF ++ + HN FD+ FI+ + + + L + IDTL Sbjct: 75 MVADKPVFEKVLGDFLDFV--EDDILVGHNIHDFDMKFIHRDCEAFFRMFLG-NDYIDTL 131 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IAR+ P + L L Y I+I+ H AL D + V+ ++ Sbjct: 132 PIARKCLPQLGHHRLTDLALYYKISING--AHRALNDCRMNQLVFERL 177 >gi|226941443|ref|YP_002796517.1| DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9] gi|226716370|gb|ACO75508.1| Probable DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9] Length = 493 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 11/175 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG DRI EIG VE + + T R + + P G+ P ++ GI+D Sbjct: 6 YVIVDLETTGGHITRDRITEIGLVE-VSHGVTTR-WSQLVNP-GQPIPPFIEEMTGISDA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P F+ + N IAHNA+FD GF+ E +R+ + + T+ Sbjct: 63 MVAEAPPFAELAPALLARLN--GKLLIAHNARFDYGFLKNEFRRLGLTF--TTDPLCTVK 118 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++RR +P ++ L+SL R+GI + +H AL D+ VY+ + +++ Sbjct: 119 LSRRLYPQHAKHSLDSLIARHGIDVPPGMRHRALGDAEA---VYVFLQTAVAELG 170 >gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang] gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus casei str. Zhang] Length = 1444 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 9/183 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV++ D ++ F+ + P G S + L ITD+ Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQ-FEEMIDP-GFPLSELTINLTHITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +F F F + A + HN FDVGF++ +R +D + +IDTL Sbjct: 479 MVHGSKSEVDVFKLFQQFCD--GAIMVGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R HP + + L++L K+Y +++ H H A D+ + + +++ +G T Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVSLEHH--HRANADAEATGYLLYALEKEAAKM-YGMTT 592 Query: 188 NED 190 Sbjct: 593 LNQ 595 >gi|327472427|gb|EGF17858.1| DNA polymerase III PolC [Streptococcus sanguinis SK408] Length = 1462 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSNATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|307710886|ref|ZP_07647313.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK321] gi|307617331|gb|EFN96504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK321] Length = 1463 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PRISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|323342031|ref|ZP_08082264.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464456|gb|EFY09649.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 1433 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 106/233 (45%), Gaps = 17/233 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + D IIE G V L++ + + Q F+ P +L ITD Sbjct: 385 YVSFDLETTGLSNYYDHIIEFGGV-LIENGRVVKKMQTFIK-APVPVRPFIQELTNITDA 442 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + PS E +F + +AHNA+FD+ FI L+RI K+P+ + +IDTL Sbjct: 443 DLVNAPSIEEAMDEILEFLGDH--VLVAHNAQFDIDFIQETLRRIGKEPI-QNAVIDTLD 499 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV------GGSQI 181 ++R + R L S+ + I H A D+ +LS V+++M+ + Sbjct: 500 LSRALFDNRRSYRLGSIARFMRIGYDEGVAHRADYDAEVLSLVFLEMLRLEQLSTMQTID 559 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD-KPLFTRITKEELDEHDKTIQTLGK 233 + NE F K K I+ + K L+ IT H K + GK Sbjct: 560 DLQSLNNESSFKKLRKSHCTVIAKTQSSIKDLYQLITLS----HTKYLAFFGK 608 >gi|289167137|ref|YP_003445404.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6] gi|288906702|emb|CBJ21536.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6] Length = 1463 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 8/169 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L Sbjct: 420 LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNIVAE-FDEFINP-GHPLSAFTTELT 477 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P + Sbjct: 478 GITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQPV 534 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 535 IDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO] Length = 663 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 98/204 (48%), Gaps = 11/204 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +VFD+ETTGL + D IIE+ AV++ + +F F+ P G S + L Sbjct: 422 LSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVI-ESFDEFIDP-GHPLSRTTVDLT 479 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD ++ S + F +F ++ +AHNA FD+GF+N R P + + Sbjct: 480 GITDGMVRGSKSEEEVLRMFLEF--SKDTILVAHNAAFDMGFLNTSYARYGI-PEAANPV 536 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGS 179 IDTL +AR +P R L L K++G+++ H A+ D+ + +++K + Sbjct: 537 IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQH--HRAIYDAEATGHLAWIFVKEAMDNH 594 Query: 180 QINFGFKTNEDRFFKEEKKTVPNI 203 + + + NE + K Sbjct: 595 NMLYHDQLNEHIGEGDSYKRARPF 618 >gi|229490475|ref|ZP_04384316.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis SK121] gi|229322765|gb|EEN88545.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis SK121] Length = 608 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 17/212 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ +V D+ETTG + D I EIGAV++ + P GR P ++ Sbjct: 56 TPLSETTFVVVDLETTGGSADQDSITEIGAVKIRGGEVLGE-MATLVDP-GRSIPPYIVE 113 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT L P + F +F + A +AHNA FD+GF+ A R + P Sbjct: 114 LTGITTAMLIGAPPIERVLPAFLEF--AEGAVLVAHNAPFDIGFLKAAASRSAR-PWPAF 170 Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 R++ T+ +ARR L++L + +T + H AL D+ DV ++ Sbjct: 171 RVLCTVKLARRVLTRDEAPSVKLSALAHLFQVTT--QPTHRALDDARATVDVLHGLI--D 226 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 N G + + E +PNIS +R K Sbjct: 227 RVGNQGVHS-----YSELVDYLPNISSHQRAK 253 >gi|307705682|ref|ZP_07642529.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK597] gi|307620762|gb|EFN99851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK597] Length = 1463 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|295426318|ref|ZP_06818977.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664] gi|295063991|gb|EFG54940.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664] Length = 1435 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 14/211 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL S D IIEIGAV++ + K F F+ P+ S + + Sbjct: 411 MTYEDREFVIFDVETTGLSSVYDTIIEIGAVKMKNG-KVLERFDKFINPH-HPLSDQTIN 468 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE + + +F DF+ + HN +FDVGF+NA L+R + + Sbjct: 469 LTSITDEMVGAADDEDVVIRQFKDFYG--DMPLCGHNVQFDVGFVNAALRRAGLEEI-KQ 525 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL ++R HP R+ L+SL K+Y + + H H A D+ + K++ + Sbjct: 526 PVVDTLEVSRLLHPEQTRHTLDSLVKKYDVVLEHH--HRANQDAEATGYLMYKLLDAFKK 583 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +T KR +P Sbjct: 584 KFGEDNLGKLNDFAKHGET------FKRARP 608 >gi|327460706|gb|EGF07041.1| DNA polymerase III PolC [Streptococcus sanguinis SK1] Length = 1462 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSNATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|283769479|ref|ZP_06342375.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia extructa W1219] gi|283103747|gb|EFC05133.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia extructa W1219] Length = 1442 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 59/189 (31%), Positives = 101/189 (53%), Gaps = 7/189 (3%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++ +VFD+ETTGL +K D +IE GAV++ + + + Q+F+ P K Sbjct: 387 KIDEATYVVFDLETTGLSAKYDYMIEFGAVKIKNGLRLDSK-QLFIKPPI-SIPAFIEKK 444 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 I++E +++ SFS + E + +A +AHNA FD F+N EL+R+++ PL + Sbjct: 445 TNISNEMVRNAKSFSEVVDELLAYIG--DAVLVAHNASFDFPFLNEELRRLSRKPL-TNP 501 Query: 123 IIDTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +IDTL +AR SR L + Y + S H A D+++L+D + ++V + Sbjct: 502 VIDTLDMARAILSDRSRFALEYVSNHYKLNYSRSDAHRADYDANILADAFEHLLVDAKR- 560 Query: 182 NFGFKTNED 190 F +T D Sbjct: 561 QFQVETIRD 569 >gi|306824435|ref|ZP_07457781.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433222|gb|EFM36192.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 1463 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|270292055|ref|ZP_06198270.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M143] gi|270279583|gb|EFA25425.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M143] Length = 1463 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|324992474|gb|EGC24395.1| DNA polymerase III PolC [Streptococcus sanguinis SK405] gi|324995996|gb|EGC27907.1| DNA polymerase III PolC [Streptococcus sanguinis SK678] gi|327488780|gb|EGF20579.1| DNA polymerase III PolC [Streptococcus sanguinis SK1058] Length = 1462 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSNATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|327462769|gb|EGF09091.1| DNA polymerase III PolC [Streptococcus sanguinis SK1057] Length = 1462 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GYPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|157375547|ref|YP_001474147.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157317921|gb|ABV37019.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 208 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 9/178 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + IV D ETTGL + DR IEIGAV+L D TFQ + P G + S Sbjct: 1 MTTRAANSVIVLDFETTGLSPNQGDRAIEIGAVKLQDG-IVVDTFQELMNP-GFRVSGFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L P + + ++F F N +AHNA FD F++AEL I + Sbjct: 59 EGYTGITNAMLNSAPPCNEVMAQFAGFIGNDN--LVAHNASFDKRFLDAELDGIGRT--Y 114 Query: 120 PSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ IARR + + + L L + I H AL DS + + +++KM+ Sbjct: 115 GGEFACSMLIARRLYQAAPNHKLGGLVEYKQIENDG-VFHRALADSEVTAKLWLKMLE 171 >gi|302392350|ref|YP_003828170.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium arabaticum DSM 5501] gi|302204427|gb|ADL13105.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium arabaticum DSM 5501] Length = 1440 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 7/167 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + IVFD+ETTG + ++ IIEIGA ++ D +R F + P + ++ Sbjct: 421 VELEETEYIVFDLETTGFNPYHNEIIEIGAAKVKDGRIIDR-FGTLVDPET-EIPERIVE 478 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GI + + KP +EF DF E A +AHN FD FIN +LQ I + LD + Sbjct: 479 LTGIDNSMVAGKPKKEEALNEFLDFVGE--ATIVAHNLSFDRNFINNKLQAIGESALD-N 535 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 +DTL++AR LN L K + ++ + H A+ D+ + + Sbjct: 536 SALDTLNLARALLDLKSFKLNRLAKEFDKSLDNH--HRAVDDAEVTA 580 >gi|332311763|gb|EGJ24858.1| DNA polymerase III polC-type [Listeria monocytogenes str. Scott A] Length = 1457 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 441 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 498 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL Sbjct: 499 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 555 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186 +AR +P + LN+L K++ I + H A+ D+ + + K++ ++ N F Sbjct: 556 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 613 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 + + + E KR +P Sbjct: 614 DSLNDYMGEGDAY-------KRARP 631 >gi|224499902|ref|ZP_03668251.1| DNA polymerase III PolC [Listeria monocytogenes Finland 1988] Length = 1444 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 542 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186 +AR +P + LN+L K++ I + H A+ D+ + + K++ ++ N F Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 600 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 + + + E KR +P Sbjct: 601 DSLNDYMGEGDAY-------KRARP 618 >gi|254828680|ref|ZP_05233367.1| polC [Listeria monocytogenes FSL N3-165] gi|254829923|ref|ZP_05234578.1| DNA polymerase III PolC [Listeria monocytogenes 10403S] gi|254898515|ref|ZP_05258439.1| DNA polymerase III PolC [Listeria monocytogenes J0161] gi|254911994|ref|ZP_05262006.1| DNA polymerase III [Listeria monocytogenes J2818] gi|254936321|ref|ZP_05268018.1| polC [Listeria monocytogenes F6900] gi|255026351|ref|ZP_05298337.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-003] gi|284801705|ref|YP_003413570.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578] gi|284994847|ref|YP_003416615.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923] gi|258601084|gb|EEW14409.1| polC [Listeria monocytogenes FSL N3-165] gi|258608911|gb|EEW21519.1| polC [Listeria monocytogenes F6900] gi|284057267|gb|ADB68208.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578] gi|284060314|gb|ADB71253.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923] gi|293589958|gb|EFF98292.1| DNA polymerase III [Listeria monocytogenes J2818] Length = 1444 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 542 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186 +AR +P + LN+L K++ I + H A+ D+ + + K++ ++ N F Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 600 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 + + + E KR +P Sbjct: 601 DSLNDYMGEGDAY-------KRARP 618 >gi|16803360|ref|NP_464845.1| DNA polymerase III PolC [Listeria monocytogenes EGD-e] gi|21263551|sp|Q8Y7G1|DPO3_LISMO RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|16410736|emb|CAC99398.1| polC [Listeria monocytogenes EGD-e] Length = 1444 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 542 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186 +AR +P + LN+L K++ I + H A+ D+ + + K++ ++ N F Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 600 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 + + + E KR +P Sbjct: 601 DSLNDYMGEGDAY-------KRARP 618 >gi|125718854|ref|YP_001035987.1| DNA polymerase III PolC [Streptococcus sanguinis SK36] gi|166217455|sp|A3CQI2|DPO3_STRSV RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|125498771|gb|ABN45437.1| DNA polymerase III polC-type, putative [Streptococcus sanguinis SK36] Length = 1462 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKIIQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|331701344|ref|YP_004398303.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929] gi|329128687|gb|AEB73240.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929] Length = 1439 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 11/198 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL + DR+IE+ AV++ + + ++ F+ F+ P G S L ITDE Sbjct: 420 YVVFDTETTGLSAIYDRVIELSAVKMQNSNVIDQ-FEEFIDP-GFHLSERTTNLTSITDE 477 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S +F F +F +A + HN FD+GF+N R + IIDTL+ Sbjct: 478 MVHGSKSEEEVFKLFREFCG--DAIVVGHNVTFDMGFMNTGYVRHGMHE-MQNPIIDTLT 534 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVGGSQINFG 184 +AR +P+ R LN+L K++ +++ H H A+ D+ +++K I + Sbjct: 535 LARFLYPNLRGYRLNTLAKKFDVSLEHH--HRAIYDAETTGHLNYLFLKDAEDRYGIVYH 592 Query: 185 FKTNEDRFFKEEKKTVPN 202 + N+ + + Sbjct: 593 DQLNDHMTDNDAYRHARP 610 >gi|293364694|ref|ZP_06611411.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037] gi|307702942|ref|ZP_07639889.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus oralis ATCC 35037] gi|291316144|gb|EFE56580.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037] gi|307623335|gb|EFO02325.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus oralis ATCC 35037] Length = 1463 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|224501737|ref|ZP_03670044.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-561] Length = 1444 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 542 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186 +AR +P + LN+L K++ I + H A+ D+ + + K++ ++ N F Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 600 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 + + + E KR +P Sbjct: 601 DSLNDYMGEGDAY-------KRARP 618 >gi|226223921|ref|YP_002758028.1| DNA polymerase III (alpha subunit) [Listeria monocytogenes Clip81459] gi|225876383|emb|CAS05092.1| Putative DNA polymerase III (alpha subunit) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 1444 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 542 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186 +AR +P + LN+L K++ I + H A+ D+ + + K++ ++ N F Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 600 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 + + + E KR +P Sbjct: 601 DSLNDYMGEGDAY-------KRARP 618 >gi|254932365|ref|ZP_05265724.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262] gi|293583921|gb|EFF95953.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262] gi|328475042|gb|EGF45830.1| DNA polymerase III PolC [Listeria monocytogenes 220] Length = 1444 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 542 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186 +AR +P + LN+L K++ I + H A+ D+ + + K++ ++ N F Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 600 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 + + + E KR +P Sbjct: 601 DSLNDYMGEGDAY-------KRARP 618 >gi|148244527|ref|YP_001219221.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326354|dbj|BAF61497.1| DNA polymerase III epsilon subunit [Candidatus Vesicomyosocius okutanii HA] Length = 223 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 125/228 (54%), Gaps = 11/228 (4%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGI 65 R IV D ETTG+ + RIIEIG +E++D T N + ++ PN +N +++++HGI Sbjct: 3 RLIVLDTETTGIKPSEGHRIIEIGCIEIIDRQITKNNKYHEYIQPN--RNVGDSVRIHGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRI 123 TD+FL KP F + EF + E I HNA FD+GF+N EL+ I + D I Sbjct: 61 TDKFLTKKPKFKEVVEEFLAYIKE--TTLIIHNAPFDLGFLNHELKLIGINERIEDKCTI 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ID+L +++++ P + ++L+SLC+R+ I S R+ HGALLD +L+ VY+ M G S + Sbjct: 119 IDSLELSKQQRPGTLHNLDSLCRRFKIDSSARTVHGALLDVQILAQVYLAMTGGQSTLFS 178 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 KT ++ N ++ K K+EL H + L Sbjct: 179 NDKTINEQDNNTNNIVRINNAIGKIK---IVYANKKELAAHADYFKKL 223 >gi|327390689|gb|EGE89029.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA04375] Length = 1463 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GYPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|229096133|ref|ZP_04227106.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-29] gi|229115089|ref|ZP_04244499.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-3] gi|228668229|gb|EEL23661.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock1-3] gi|228687093|gb|EEL40998.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-29] Length = 934 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPVFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|46907546|ref|YP_013935.1| DNA polymerase III PolC [Listeria monocytogenes serotype 4b str. F2365] gi|47093944|ref|ZP_00231681.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes str. 4b H7858] gi|254824621|ref|ZP_05229622.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194] gi|300765440|ref|ZP_07075422.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes FSL N1-017] gi|67460321|sp|Q720A2|DPO3_LISMF RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|46880814|gb|AAT04112.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes serotype 4b str. F2365] gi|47017682|gb|EAL08478.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes str. 4b H7858] gi|293593859|gb|EFG01620.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194] gi|300513877|gb|EFK40942.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes FSL N1-017] gi|328468603|gb|EGF39603.1| DNA polymerase III PolC [Listeria monocytogenes 1816] Length = 1444 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 16/205 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ Sbjct: 428 YCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + F ++ + +AHNA FD+GFIN +++ + + + ++DTL Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLE 542 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI-NFGFK 186 +AR +P + LN+L K++ I + H A+ D+ + + K++ ++ N F Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHNIDFH 600 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 + + + E KR +P Sbjct: 601 DSLNDYMGEGDAY-------KRARP 618 >gi|306830212|ref|ZP_07463396.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249] gi|304427738|gb|EFM30834.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249] Length = 1463 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|282600891|ref|ZP_06257782.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM 15176] gi|282571272|gb|EFB76807.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM 15176] Length = 1347 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 21/230 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGLDS + + EIGAV + + + F F+ P G+ + ++L GI D Sbjct: 321 FVVFDTETTGLDSNVEALTEIGAVYVENGKINEEKKFCTFVNP-GKPIPQKVVELTGIND 379 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126 + D P+ F +F + +AHNA FD+ FI ++ D + IDT Sbjct: 380 AMVADAPTPEEAIRAFKEFCGDH--VLVAHNAHSFDMLFIRKAGEKAGIS-FDENTYIDT 436 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ----- 180 L + + P RN L+++ K I + H A+ D+ L+ ++ M+ + Sbjct: 437 LPMGQALFPGLRNYKLDTINKHLEIPPFNH--HRAVDDAMALARIFEVMLNDLQEKDIPT 494 Query: 181 ---INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 IN G N++ K+ + + K L+ ++ H + Sbjct: 495 VEAINTGLGGNKEVLKKKYYHLIILVQNQVGLKNLYRIVS----AAHTQY 540 >gi|228964616|ref|ZP_04125724.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar sotto str. T04001] gi|228795047|gb|EEM42545.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar sotto str. T04001] Length = 365 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPPFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|229102245|ref|ZP_04232954.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-28] gi|228681146|gb|EEL35314.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus Rock3-28] Length = 934 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFVNPK-REIPVFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DESLVKQAPLFQDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEIH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKKH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|82523686|emb|CAI78468.1| Rad3-related DNA helicases [uncultured candidate division WS3 bacterium] Length = 965 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 10/203 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG+DS+ DRIIE+GAV ++D TF+ F+ P G + + L GI+D Sbjct: 28 FVGLDLETTGVDSRVDRIIEVGAVRVVDGR-VADTFESFVNP-GCPIPSDIVHLTGISDA 85 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+ + +F + +AH+A FD GF++ + + DTL Sbjct: 86 DVAGAPTIDEVLPRIIEFIG--GSPIVAHHAPFDTGFLDEAAGGRPGLLVGRGGVFDTLP 143 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + R P + L + + + I H A D+ +SD+++ ++ QI T Sbjct: 144 LTRALLPRLPNHRLATAARFFDIPT--GRSHRATDDARAVSDLFLALLGVLDQIG---AT 198 Query: 188 NEDRFFKEEKKTVPNISLLKRDK 210 DR ++ + R++ Sbjct: 199 VLDRMYRLADTATRTLIEAARER 221 >gi|46202557|ref|ZP_00053013.2| COG5002: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 711 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 10/181 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64 + +VFD ETTGL + D+I+ I V +++ +F + P GR E+++ HG Sbjct: 516 LTFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNP-GRSIPAESIRYHG 574 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITDE + DKP + +F + +A +AHNA FD+ F+ + + P ++ Sbjct: 575 ITDEMVIDKPPAGVVLPQFRSYVA--DAVLVAHNAAFDLKFLRMREKEMGVRFDSP--VL 630 Query: 125 DTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DT+ ++ P + + L+ +C+RYGI I+ R H AL DS + + V ++ + Sbjct: 631 DTMILSNFLDGPEAGHSLDDICERYGIEITDR--HTALGDSMVTAAVLLRQIEALEGRGI 688 Query: 184 G 184 Sbjct: 689 H 689 >gi|157150704|ref|YP_001451113.1| DNA polymerase III PolC [Streptococcus gordonii str. Challis substr. CH1] gi|157075498|gb|ABV10181.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus gordonii str. Challis substr. CH1] Length = 1462 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MALSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|213021700|ref|ZP_03336147.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213612768|ref|ZP_03370594.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 164 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 11/158 (6%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGITISHRSK 157 D+L++AR+ P RN L++LC RY I S R+ Sbjct: 127 FCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTL 164 >gi|311068754|ref|YP_003973677.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942] gi|310869271|gb|ADP32746.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942] Length = 930 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 9/182 (4%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 NK R +V D+ETTG K D+II+I AV + + T R F ++ PN + +L Sbjct: 1 MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPN-KSIPFFIEQL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT+ ++++ F ++ E + + A ++AHN FD+GF+ EL L Sbjct: 59 TGITNSMVENEQPFEAVAEEVFQLLD--GAYFVAHNIHFDLGFVKYELNEAGFR-LPDCE 115 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++DT+ ++R +P L L + + + H + H A D+ + +++K++ ++ Sbjct: 116 VLDTVELSRIVYPGFEGYKLTELSEE--LQLKHENPHRADSDAEVTGFIFLKIIDKLQRL 173 Query: 182 NF 183 Sbjct: 174 PL 175 >gi|315611914|ref|ZP_07886833.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296] gi|315316092|gb|EFU64125.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296] Length = 1463 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|229058278|ref|ZP_04196665.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH603] gi|228720049|gb|EEL71635.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH603] Length = 934 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPLFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DEDLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|322375786|ref|ZP_08050297.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C300] gi|321279054|gb|EFX56096.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C300] Length = 1463 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F +N +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KNTVLVAHNATFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|323496243|ref|ZP_08101301.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326] gi|323318520|gb|EGA71473.1| DNA polymerase III, alpha subunit [Vibrio sinaloensis DSM 21326] Length = 204 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 11/191 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + +V D ETTGL DR IEIGAV+L++ + TFQ + P G + S Sbjct: 1 MTHAHS--VVVLDFETTGLSPNMGDRAIEIGAVKLVNG-EVVDTFQQLMNP-GFRVSAFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT++ L PS + +EF DF +N +AHNA FD F++ EL+R+ Sbjct: 57 EGYTGITNQMLSGAPSCDEVMTEFADFIRGEN--LVAHNASFDKRFLDDELERVKV--AY 112 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L I+RR H + L + + I H AL D+ + + +++ M+ Sbjct: 113 RGEFACSLLISRRLHQDAPSHKLGDIVRYKHIENDG-VFHRALADAQVTAKLWMVMVNDL 171 Query: 179 SQINFGFKTNE 189 Q + E Sbjct: 172 QQRGIAQPSFE 182 >gi|313608987|gb|EFR84729.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes FSL F2-208] Length = 1447 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 8/182 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + Sbjct: 424 IALQDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 481 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K + F ++ + +AHNA FD+GFIN +++ + + + Sbjct: 482 LTGITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-N 538 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL +AR +P + LN+L K++ I + H A+ D+ + + K++ + Sbjct: 539 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKE 596 Query: 181 IN 182 ++ Sbjct: 597 MH 598 >gi|217964533|ref|YP_002350211.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes HCC23] gi|217333803|gb|ACK39597.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria monocytogenes HCC23] gi|307570901|emb|CAR84080.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria monocytogenes L99] Length = 1443 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 8/182 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + Sbjct: 420 IALQDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K + F ++ + +AHNA FD+GFIN +++ + + + Sbjct: 478 LTGITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-N 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL +AR +P + LN+L K++ I + H A+ D+ + + K++ + Sbjct: 535 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKE 592 Query: 181 IN 182 ++ Sbjct: 593 MH 594 >gi|322386941|ref|ZP_08060565.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100] gi|321269223|gb|EFX52159.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100] Length = 1462 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PQITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|295395939|ref|ZP_06806124.1| nuclease subunit of the excinuclease complex [Brevibacterium mcbrellneri ATCC 49030] gi|294971212|gb|EFG47102.1| nuclease subunit of the excinuclease complex [Brevibacterium mcbrellneri ATCC 49030] Length = 560 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 9/211 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + + V D+ETTG +S I EIGAV+ FQ + P SP +L Sbjct: 10 LHDVTFTVVDLETTGANSAQGDITEIGAVKSRGGEIIGE-FQTLVRPTRSVISPFVERLT 68 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT+ + P +S+ F +F + +AHNA FDVGF+ R++ P + Sbjct: 69 GITNSMVATAPELASVIPMFLEF--AHGSILVAHNAGFDVGFLKEACARLDY-PWPGYEV 125 Query: 124 IDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +AR + + L +L + + H AL D+ + M Sbjct: 126 VDTVRLARLCVTRQEVRNHKLGTLATFFNVPTP--PTHRALDDARATHHILQSMFELFGA 183 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + + ++ K + L D P Sbjct: 184 VGVTTFEDLQGLKQQGWKVRQSKKHLAHDVP 214 >gi|313899185|ref|ZP_07832705.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. HGF2] gi|312956008|gb|EFR37656.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium sp. HGF2] Length = 1448 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 17/240 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K VFD+ETTGL S+ D IIE G + D + ++ Q+F+ P S + Sbjct: 391 IELEKGTYCVFDLETTGLSSRFDHIIEFGGQIVKDRACI-KSLQLFIKPPVA-LSAFTTE 448 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT+E +K+ SF+ E DF ++ +AHNA FD F+N EL RI + P+ + Sbjct: 449 LTGITEEHMKNAKSFADSIDEILDFIG--DSILVAHNATFDYNFLNDELARIGRPPI-MN 505 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL +AR + L + + YGI H A D+ +L+ Y+ M+ Sbjct: 506 PVIDTLDLARSMQADRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLAQTYMNMLNDLKH 565 Query: 181 INFGFKTNEDRFFKEE--KKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQTLGKN 234 I + +D E K V ++++L ++ K LF +T H + K+ Sbjct: 566 IK-NLQELQDMQTAESFRKVRVKHVTILAKNMAGLKELFELVTLS----HTSYLAYSSKS 620 >gi|254505589|ref|ZP_05117736.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16] gi|219551706|gb|EED28684.1| DNA polymerase III PolC-type [Vibrio parahaemolyticus 16] Length = 204 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M N +V D ETTGL DR IEIGAV+L++ + TFQ + P G + S Sbjct: 1 MSLANS--VVVLDFETTGLSPNMGDRAIEIGAVKLVNG-EVVDTFQQLMNP-GFRVSSFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L+D PS + ++F F +N +AHNA FD F++ EL+R+N Sbjct: 57 EGYTGITNVMLRDAPSCDEVMAQFAQFIAGEN--LVAHNASFDKRFLDDELERVN--AAY 112 Query: 120 PSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +L ++RR + + L L + I H AL D+ + + +++ M+ Sbjct: 113 SGEFACSLLVSRRLNQDAPSHKLGDLVRFKQIDNDG-VFHRALADAEMTAKLWMLMV 168 >gi|229166488|ref|ZP_04294244.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH621] gi|228617062|gb|EEK74131.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus AH621] Length = 934 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPLFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DEDLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|226307078|ref|YP_002767038.1| DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4] gi|226186195|dbj|BAH34299.1| putative DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4] Length = 586 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 17/212 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ +V D+ETTG + D I EIGAV++ + P GR P ++ Sbjct: 34 TPLSETTFVVVDLETTGGSADQDSITEIGAVKIRGGEVLGE-MATLVDP-GRSIPPYIVE 91 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT L P + F +F + A +AHNA FD+GF+ A R + P Sbjct: 92 LTGITTAMLIGAPPIERVLPAFLEF--AEGAVLVAHNAPFDIGFLKAAASRSAR-PWPSF 148 Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 R++ T+ +ARR L++L + +T + H AL D+ DV ++ Sbjct: 149 RVLCTVKLARRVLTRDEAPSVKLSALAHLFQVTT--QPTHRALDDARATVDVLHGLI--D 204 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 N G + + E +PNIS +R K Sbjct: 205 RVGNQGVHS-----YSELVDYLPNISSHQRAK 231 >gi|332359305|gb|EGJ37126.1| DNA polymerase III PolC [Streptococcus sanguinis SK49] Length = 1462 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MALSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|307709855|ref|ZP_07646304.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK564] gi|307619404|gb|EFN98531.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK564] Length = 1463 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGLSKIS-Q 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|296129915|ref|YP_003637165.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM 20109] gi|296021730|gb|ADG74966.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM 20109] Length = 631 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 57/199 (28%), Positives = 89/199 (44%), Gaps = 12/199 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +V D+ETTG + D I EIGAV++ FQ + P G P Sbjct: 57 TPLSDVTFVVVDLETTGGRAAEDAITEIGAVKVRGGEVLGE-FQTLVDPGG-PVPPFIQV 114 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT L P+ + F +F + A +AHNA FDVGF+ A R + Sbjct: 115 LTGITTSMLVGAPTIGEVLPSFLEF--ARGAVLVAHNAPFDVGFLRAAAARS-ERAWPGF 171 Query: 122 RIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +++DT+ +ARR + + + L++L +G T++ H AL D+ DV ++ G Sbjct: 172 QVVDTVRLARRVVLRDEAPNHKLSTLAALFGATVT--PNHRALADARATVDVLHALL--G 227 Query: 179 SQINFGFKTNEDRFFKEEK 197 G ED + Sbjct: 228 RLAPLGVTHLEDLATATDP 246 >gi|295398912|ref|ZP_06808894.1| DnaQ family exonuclease/DinG family helicase [Geobacillus thermoglucosidasius C56-YS93] gi|294978378|gb|EFG53974.1| DnaQ family exonuclease/DinG family helicase [Geobacillus thermoglucosidasius C56-YS93] Length = 921 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 9/180 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K R ++ D+ETTG K DRII++G V + + R F F P R P +L Sbjct: 2 KDRFVIMDLETTGNVPKKGDRIIQLGMVVVENGQIIER-FSSFFNPE-RDIPPFVQQLTN 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I ++ + D P F+ ++ D Q + ++AHN FD+ F+ EL P I Sbjct: 60 INEQMVADAPVFAEEAAKVVDML--QQSYFVAHNVSFDLQFLQEELHMAGFPPFS-GPTI 116 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DT+ +AR P L L K I +H H A D+ + + ++I ++ Q+ Sbjct: 117 DTVELARIVFPDAESYKLADLAKLLCI--AHDQPHHADSDAEVTAKLFIALLDRLRQLPL 174 >gi|332365809|gb|EGJ43566.1| DNA polymerase III PolC [Streptococcus sanguinis SK355] Length = 1462 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSVFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F +++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--KDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|240146656|ref|ZP_04745257.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] gi|257201200|gb|EEU99484.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] Length = 226 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 15/180 (8%) Query: 3 RKNKMR------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 RK K R +++D+ETTG+ S D +IEI AV++ + + F + P GR Sbjct: 5 RKGKQRREYVRDYVLYDLETTGISSLYDEVIEISAVKVRNGKIVDE-FSELVNP-GRPIP 62 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINK 115 A ++ I+D+ +++ SF + EF F + HN FD+ F+ + ++ Sbjct: 63 YAASSVNNISDKMVENARSFEKVLPEFLAFAGDD--VLAGHNIAGFDMKFLYRDCEKYFG 120 Query: 116 DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L + IDTL+IA+ P ++ L+ L + YGI S + H AL D + V+ M Sbjct: 121 QTL-TNDYIDTLAIAKLCFPEWKHRKLSDLAEHYGI--STKGAHRALADCRMNQQVFELM 177 >gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263] gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263] Length = 1442 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 9/190 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + D IIEI AV++ + TFQ F+ P+ R + +L ITD+ Sbjct: 427 FVFFDLETTGLYAGRDAIIEIAAVKIKN-KHVLDTFQTFVNPH-RPIPQKITELTSITDQ 484 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + F DF + AHNA FD+GF++ L+R + +DTL Sbjct: 485 MVAQGKEEEAAVRAFLDFCD--GKILAAHNASFDMGFMSIALERYGIP--NTITYVDTLP 540 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P +R++L L + I + H H A+ DS + +++++M + + Sbjct: 541 MARTLIPDIARHNLKKLASYFKIDMGHH--HRAIDDSICSAKIFVRLMGLAEKQHCDRAA 598 Query: 188 NEDRFFKEEK 197 + +R + E+ Sbjct: 599 DLNRLMRLEQ 608 >gi|169833032|ref|YP_001693801.1| DNA polymerase III PolC [Streptococcus pneumoniae Hungary19A-6] gi|168995534|gb|ACA36146.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae Hungary19A-6] Length = 1463 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 8/169 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L Sbjct: 420 LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELT 477 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P + Sbjct: 478 GITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQPV 534 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 535 IDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|168485959|ref|ZP_02710467.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1087-00] gi|183570911|gb|EDT91439.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1087-00] Length = 1463 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSVFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|154484062|ref|ZP_02026510.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC 27560] gi|149735104|gb|EDM50990.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC 27560] Length = 237 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 65/190 (34%), Positives = 89/190 (46%), Gaps = 9/190 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIET+G+ K D+IIEIGAV++ D + TF + P G K SP +L GITDE Sbjct: 5 YVCVDIETSGIRVKWDKIIEIGAVKVRDGKAVD-TFSELINP-GLKLSPYITELTGITDE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKDKP + F +F + + HN FD F+ IN+ IDTL Sbjct: 63 MLKDKPFIEEVLPRFIEFAGDD--VIMGHNIMFDYSFLKQNA--INQKLKFDKMGIDTLK 118 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 IAR+ L LC YGI + + H A D+ + S +Y +M + G Sbjct: 119 IARKTLKGLESRGLEYLCNYYGI--ADENHHRAFNDAEVTSKLYNVLMEKFGTESPGLFE 176 Query: 188 NEDRFFKEEK 197 FK +K Sbjct: 177 PYQLVFKAKK 186 >gi|332799219|ref|YP_004460718.1| DNA polymerase III subunit alpha [Tepidanaerobacter sp. Re1] gi|332696954|gb|AEE91411.1| DNA polymerase III, alpha subunit [Tepidanaerobacter sp. Re1] Length = 1422 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTGL ND IIEIGAV++L+ +R F F+ P R + L GIT++ Sbjct: 408 FVVVDIETTGLCFDNDEIIEIGAVKILNNEIIDR-FSSFIKPQ-RLIPTNIINLTGITND 465 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK + F +F + ++AHNA+FD GFI E ++ + I+DTL+ Sbjct: 466 MLKTARPIEKVLPSFMEFLG--DGVFVAHNAEFDSGFIRREASKLGIPF--KNNILDTLA 521 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +AR + L++L K I + S H A+ D+ + + ++++ ++ Sbjct: 522 LARIIFSKLKNHRLDTLAKELNIKM--GSHHRAIDDAKTAALILQELLIKVNEAGI 575 >gi|312110481|ref|YP_003988797.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y4.1MC1] gi|311215582|gb|ADP74186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y4.1MC1] Length = 921 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 9/180 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K R ++ D+ETTG K DRII++G V + + R F F P R P +L Sbjct: 2 KDRFVIMDLETTGNVPKKGDRIIQLGMVVVENGQIIER-FSSFFNPE-RDIPPFVQQLTN 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I ++ + D P F+ ++ D Q + ++AHN FD+ F+ EL P I Sbjct: 60 INEQMVADAPVFAEEAAKVVDML--QQSYFVAHNVSFDLQFLQEELHMAGFPPFS-GPTI 116 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DT+ +AR P L L K I +H H A D+ + + ++I ++ Q+ Sbjct: 117 DTVELARIVFPDAESYKLADLAKLLCI--AHDQPHHADSDAEVTAKLFIALLDRLRQLPL 174 >gi|322388734|ref|ZP_08062331.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779] gi|321140353|gb|EFX35861.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779] Length = 1464 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 419 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNIIAE-FDEFINP-GHPLSAFTTE 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 477 LTGITDDHVKNAKPLVQVLKEFQEFC--KDTVLVAHNASFDVGFMNANYERHGL-PKITQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 582 >gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] Length = 1440 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 17/213 (7%) Query: 2 IRKNKMRKIVFDIETT-GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 I +VFD+ETT GL + D IIE+ AV++ + TF+ F+ P G S + Sbjct: 407 IELTDATYVVFDVETTTGLSAVYDTIIELAAVKMHKGNVI-ETFEQFIDP-GHPLSQTTI 464 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE ++ S + F +F + +AHNA FD+GF+N + P Sbjct: 465 NLTGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGI-PEAA 521 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV-YIKMMVGG 178 + +IDTL ++R +P + LN+L K++G+ + H A+ DS + +I + Sbjct: 522 NPVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQH--HRAIYDSESTGHLCWIFLKEAK 579 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + F + +R E KR +P Sbjct: 580 ENHDMHFHDDLNRHIGEGDSY-------KRARP 605 >gi|313638095|gb|EFS03362.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri FSL S4-171] Length = 1444 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 8/182 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + Sbjct: 421 ILLKDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 478 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K + F ++ + +AHNA FD+GFIN +++ P + Sbjct: 479 LTGITDDMVKGSDPIDVVLKRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAEN 535 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL +AR +P + LN+L K++ I + H A+ D+ + + K++ + Sbjct: 536 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLGWKLIKDAKE 593 Query: 181 IN 182 ++ Sbjct: 594 MH 595 >gi|260434020|ref|ZP_05787991.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260417848|gb|EEX11107.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 470 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 7/174 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62 +++ +VFD ETTGL D I++IGAV ++ F + P G P + ++ Sbjct: 273 LSQLCFVVFDTETTGLLPHKDEIVQIGAVRVVKGRIVEGEQFDTLVNP-GIPIPPASTRV 331 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 H ++D ++D P + +F F ++A +AHNA FD+ F+ +R+ + P Sbjct: 332 HKVSDRMVQDAPDIITAGRQFHHF--ARDAVIVAHNAPFDMAFLRRHAKRMEVEWDHP-- 387 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+DT+ ++ +S + L++LC R GI I +H AL D+ ++ ++M+ Sbjct: 388 ILDTVLLSAVLFGASETHTLDALCDRLGIEIPETLRHTALGDAVATAEALVRML 441 >gi|262283487|ref|ZP_06061253.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA] gi|262260978|gb|EEY79678.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA] Length = 1462 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MALSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ S + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKSLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|313633403|gb|EFS00239.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri FSL N1-067] Length = 1452 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 8/182 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + Sbjct: 429 ILLKDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 486 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K + F ++ + +AHNA FD+GFIN +++ P + Sbjct: 487 LTGITDDMVKGSDPIDVVLKRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAEN 543 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL +AR +P + LN+L K++ I + H A+ D+ + + K++ + Sbjct: 544 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLGWKLIKDAKE 601 Query: 181 IN 182 ++ Sbjct: 602 MH 603 >gi|159046099|ref|YP_001534893.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] gi|157913859|gb|ABV95292.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] Length = 485 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 8/176 (4%) Query: 3 RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60 + ++ ++FD ETTGL + D + +I A +++ F + P GR A Sbjct: 285 KLGDLKYVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNP-GRPIPLSAT 343 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGITD + D P F + F F A IAHNA FD+ F + I P Sbjct: 344 NIHGITDAMVADAPDFLTAGRAFHGF--ADGAVLIAHNAPFDMAFFYRKQAEIGARFDHP 401 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++ + ++ L++L +R +TI ++H AL D+ ++V++K++ Sbjct: 402 --VLDTVLLSAVIYGQTEQHSLDALAERLNVTIPEEARHTALGDALATTEVFLKLL 455 >gi|116672512|ref|YP_833445.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24] gi|116612621|gb|ABK05345.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24] Length = 406 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 100/250 (40%), Gaps = 21/250 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL N RI EI V + + ++ + P R P+ +HGI Sbjct: 5 FAVVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNRWETLVNPQ-RDLGPQ--HIHGIRAA 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDTL 127 + P F I + + + +AHN FD F++ EL R + P + + T+ Sbjct: 62 DILHAPVFGDIAHDVMELLAGR--VLVAHNVHFDYRFVSHELGRAGLELPFEVHDCLCTM 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR P + L C +G+ +++ H A D+ + V + S F Sbjct: 120 KLARRYLPGAGRSLKDCCDSFGLNLAN--AHSAGDDAEAAAHVLSNYLRMDSGNPEWFSA 177 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP-----------LFTRITK-EELDEHDKTIQTLGKNA 235 + +F P +P L R+ + DEH+ + L + A Sbjct: 178 LDRAYFSSWPAVEPKRRQPALRRPAGEPQTHFLERLVNRLPEVAGPDEHNAYLAMLDR-A 236 Query: 236 IWDRYISSNQ 245 + DR IS ++ Sbjct: 237 LMDRQISVSE 246 >gi|309776025|ref|ZP_07671017.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 3_1_53] gi|308916307|gb|EFP62055.1| DNA polymerase III, alpha subunit, Gram-positive type [Erysipelotrichaceae bacterium 3_1_53] Length = 1271 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 115/240 (47%), Gaps = 17/240 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K VFD+ETTGL S+ D IIE G + D + ++ Q+F+ P S + Sbjct: 214 IELEKGTYCVFDLETTGLSSRFDHIIEFGGQIVKDRACI-KSLQMFIKPPVA-LSAFTTE 271 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT+E +K+ SF+ E DF ++ +AHNA FD F+N EL RI + P+ + Sbjct: 272 LTGITEEHMKNAKSFADSIDEILDFIG--DSILVAHNATFDYNFLNDELARIGRKPI-MN 328 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL +AR + L + + YGI H A D+ +L+ Y+ M+ Sbjct: 329 PVIDTLDLARSMQADRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLAQTYMNMLNDLKH 388 Query: 181 INFGFKTNEDRFFKEE--KKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQTLGKN 234 I + +D E K V ++++L ++ K LF +T H K + K+ Sbjct: 389 IK-NLQELQDMQTAESFRKVRVKHVTVLAKNMAGLKELFELVTLS----HTKYLAYSSKS 443 >gi|161986630|ref|YP_445565.2| hypothetical protein SRU_1441 [Salinibacter ruber DSM 13855] Length = 563 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG +DRI+EIGAV++ D S +R FQ + P + K+ GIT Sbjct: 8 FVVTDLETTGTTPDDDRIMEIGAVKVRDGSVVDR-FQQLVNPQ-QSVPGRITKMTGITTG 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P + ++ F + +AHN FD F++AELQR+ + L P+ + T+ Sbjct: 66 MVFEAPPADEVLPDYRAFLG--DGILVAHNVSFDGSFLDAELQRMGDETL-PNETLCTVR 122 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +ARR P + L+ L + Y I + R H AL D+ S V + + SQ+ F Sbjct: 123 LARRLLPGLDSKGLSRLAQFYDIDVEGR--HRALGDAEATSVVLRRFV---SQLAF 173 >gi|289434601|ref|YP_003464473.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170845|emb|CBH27387.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1444 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 8/182 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + Sbjct: 421 ILLKDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 478 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K + F ++ + +AHNA FD+GFIN +++ P + Sbjct: 479 LTGITDDMVKGSDPIDVVLKRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAEN 535 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL +AR +P + LN+L K++ I + H A+ D+ + + K++ + Sbjct: 536 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLGWKLIKDAKE 593 Query: 181 IN 182 ++ Sbjct: 594 MH 595 >gi|229010951|ref|ZP_04168147.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM 2048] gi|229132450|ref|ZP_04261304.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST196] gi|228651156|gb|EEL07137.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BDRD-ST196] gi|228750351|gb|EEM00181.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM 2048] Length = 934 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPLFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DENLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|221231173|ref|YP_002510325.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669] gi|220673633|emb|CAR68120.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669] Length = 1463 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 8/164 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L GITD+ Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTELTGITDD 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + EF +F ++ +AHNA FDVGF+NA +R P +IDTL Sbjct: 483 HVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQPVIDTLE 539 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 540 FARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|328948895|ref|YP_004366232.1| DNA polymerase III subunit epsilon [Treponema succinifaciens DSM 2489] gi|328449219|gb|AEB14935.1| DNA polymerase III, epsilon subunit [Treponema succinifaciens DSM 2489] Length = 216 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 13/187 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ETTGL ++ + IIEIGAV+ F + + P + L ITD+ Sbjct: 22 FVAFDTETTGLKAEKEFIIEIGAVKFNCDGIIGEPFDILIKPPI-ELPQFIKDLTHITDK 80 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P +F +F + +AHNA+FD+GFIN+EL+R + L P+ IDTL+ Sbjct: 81 MISCCPCAKEAVPQFLNFVGGKETVLVAHNAQFDLGFINSELKRFSHPEL-PNVCIDTLN 139 Query: 129 IARRKHPS-------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGS 179 +R +P + L SL KR+GI ++ H A D+ L +++ +++ Sbjct: 140 ASRWAYPDFIKEQEKGQYKLQSLAKRFGIE--AKAAHRANDDARLCMEIFKRIISDTMDK 197 Query: 180 QINFGFK 186 Q NF Sbjct: 198 QKNFSID 204 >gi|312883799|ref|ZP_07743518.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC BAA-2122] gi|309368548|gb|EFP96081.1| DNA polymerase III, alpha subunit [Vibrio caribbenthicus ATCC BAA-2122] Length = 204 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 13/202 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + + +V D ETTGL DR IEIGAV+L+D + +FQ + P G + S Sbjct: 1 MTQASS--VVVLDFETTGLSPNMGDRAIEIGAVKLVDGQVVD-SFQRLMNP-GFRVSTFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L+ PS + + F F +N IAHNA FD F++AEL+R+N Sbjct: 57 EGYTGITNNMLRTAPSCDEVMTSFSQFIAGEN--LIAHNASFDKRFLDAELERVNCG--Y 112 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L +ARR + L L + I H AL D+ + + +++ M+ Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRHRNIENDG-VFHRALADAQVTAKLWLLMVEEL 171 Query: 179 SQINFGFKTNEDRFFKEEKKTV 200 Q +G + F + KT Sbjct: 172 EQ--YGITSPSFTFMQRISKTA 191 >gi|302525360|ref|ZP_07277702.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] gi|302434255|gb|EFL06071.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] Length = 572 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 85/210 (40%), Gaps = 13/210 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +VFD+ETTG D I EIGAV++ F + P G P+ ++ Sbjct: 19 TPLRDTTFVVFDLETTGTKPGPDGITEIGAVKVRAGQVLGE-FATLVNP-GTPIPPQIVE 76 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT + D P + F +F + A +AHN+ FD F+ A + P Sbjct: 77 LTGITQAMVYDAPRIERVLPAFLEFIS--GAVLVAHNSGFDTSFMKAACEGHGYVWPRP- 133 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ T+ +ARR P + R H AL D+ +DV ++ Sbjct: 134 TVVCTVKLARRVIPREEARSYRLSSLSMLLGSRTRPTHRALDDARATTDVLHALLERVG- 192 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 N G T E+ +P+++ +R K Sbjct: 193 -NLGVHTVEELI-----DYLPDVTPAQRRK 216 >gi|188518224|ref|ZP_03003759.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188998138|gb|EDU67235.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 11 str. ATCC 33695] Length = 1442 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121 I+ E + D + + + F N +AHN FD+ FIN L + +PL + Sbjct: 462 TNISQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPL-KN 518 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDTL I+R +P + L ++CK+Y + + H A D+ +L+DV+ M Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571 >gi|153833352|ref|ZP_01986019.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01] gi|148870361|gb|EDL69287.1| DNA polymerase III, alpha subunit [Vibrio harveyi HY01] Length = 204 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 11/182 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + N +V D ETTGL DR IEIGAV+++D + +FQ + P G + S Sbjct: 1 MPQANS--VVVLDFETTGLSPNMGDRAIEIGAVKIVDG-EVVDSFQQLMNP-GFRVSSFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L+ PS + + F +F +N IAHNA FD F++ EL+RI+ Sbjct: 57 EGYTGITNNMLRTAPSCDEVMASFSEFIAGEN--LIAHNASFDKRFLDTELERIDCG--Y 112 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L +ARR + L L + I H AL D+ + + +++ M+ Sbjct: 113 SGEFACSLLVARRLIQDAPSHKLGELVRYKNIENDG-VFHRALADAQVTAKLWLLMVEEL 171 Query: 179 SQ 180 Q Sbjct: 172 EQ 173 >gi|163939458|ref|YP_001644342.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus weihenstephanensis KBAB4] gi|163861655|gb|ABY42714.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus weihenstephanensis KBAB4] Length = 934 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R +V D+ETTG K+ D+I +I AV + D + F F+ P R+ +L GI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPLFITELTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + +K P F + + Q A ++AHN FD F+N EL++ + ID Sbjct: 62 DENLVKQAPLFRDVAPMIVELL--QGAAFVAHNVHFDWNFLNEELRQAGYTEVH-CPKID 118 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P++ L L K++ + H H A D+ ++++++ + Sbjct: 119 TVELAQILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 167 >gi|268610447|ref|ZP_06144174.1| DNA polymerase III, alpha subunit [Ruminococcus flavefaciens FD-1] Length = 1441 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 11/183 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL+ + DR+ EIGAV+L + + +F + P + + +L GI+D Sbjct: 426 IVFDVETTGLNFRTDRLTEIGAVKLKN-LQVVDSFNTKVNPE-KPIPEKITELTGISDAD 483 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +KD P + F +F ++ IAHNA++D IN +R N D +DTL + Sbjct: 484 VKDAPHEAEALRMFMEFCGDKP-VLIAHNARYDTNMINQVCKRQNIDF--DYTWVDTLVM 540 Query: 130 ARRKHP-SSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + P R+ LN + K+ + H H A D+ +L+ +YI++ G + + GFK+ Sbjct: 541 CQSMLPEMGRHKLNLVAKQLKLGKFDH---HRASDDALMLAKIYIEL-AGRLKNDRGFKS 596 Query: 188 NED 190 + Sbjct: 597 LNE 599 >gi|225856031|ref|YP_002737542.1| DNA polymerase III PolC [Streptococcus pneumoniae P1031] gi|225725805|gb|ACO21657.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae P1031] Length = 1463 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 8/169 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L Sbjct: 420 LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GYPLSAFTTELT 477 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P + Sbjct: 478 GITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQPV 534 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 535 IDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|295107656|emb|CBL05199.1| DNA polymerase III, alpha subunit (gram-positive type) [Gordonibacter pamelaeae 7-10-1-b] Length = 445 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 107/208 (51%), Gaps = 19/208 (9%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K + I FD+ETTGL DRI+EIGA+ D K R+F + P G + S EA +++ I Sbjct: 5 KSKFIAFDVETTGLSEYADRIVEIGAICFEDR-KPMRSFSTLVNP-GVRISVEASRINHI 62 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 ++E L + PS + + +F +F + N+ AHNA+FD+GF+ L+R+ Sbjct: 63 SNEMLGNAPSENQAYEQFVEFLGDALAGNSILCAHNARFDMGFLKNTLERLGYSGTIN-- 120 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +DTLS++RR ++ + + I + ++H A D+ + ++ K+ G Q Sbjct: 121 YVDTLSLSRRLISDLPNYKQPTVAQYFNIQNN--AEHRAYGDAEVCGMMFCKLASLGEQR 178 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRD 209 E++ +PN++ ++++ Sbjct: 179 ---------LALNREERGIPNLTDVEKE 197 >gi|291521660|emb|CBK79953.1| exonuclease, DNA polymerase III, epsilon subunit family [Coprococcus catus GD/7] Length = 245 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 21/235 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL D IIEIGA++++ K F F+ P+ +K + + +L GITD+ Sbjct: 5 YVVFDLETTGLSPDKDTIIEIGALKVIQG-KVADRFSEFINPH-QKLTQQISELTGITDD 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + +F DF ++ + HN FD F ++ + IDTL Sbjct: 63 MLAGARNLQVVVGDFVDFC--EDYVVVGHNLGFDYRFTKMAAEKYHLPFEHEG--IDTLK 118 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 IA+ H L +LC+ YGI S S H A D+ + +Y + F+T Sbjct: 119 IAKTVHKDLPSRSLGALCEHYGIINS--SAHRAYHDALATAKLYQTL-------AHYFET 169 Query: 188 NEDRFFKEEK---KTVPNISLLKRDKPLFTRITKEELDEHDKTIQ--TLGKNAIW 237 +E + F EK K + K+ K + K E + ++ T+ + + W Sbjct: 170 SEPKLFVPEKMGFKAKKQQPMTKKQKAYLKDLCKYHKIEFNDAMEQMTMSEASRW 224 >gi|315282169|ref|ZP_07870636.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria marthii FSL S4-120] gi|313614186|gb|EFR87863.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria marthii FSL S4-120] Length = 1367 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 8/182 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I VFD+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + Sbjct: 420 IALQDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTIN 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K + F ++ + +AHNA FD+GFIN +++ + + + Sbjct: 478 LTGITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-N 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL +AR +P + LN+L K++ I + H A+ D+ + + K++ + Sbjct: 535 AVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKE 592 Query: 181 IN 182 ++ Sbjct: 593 MH 594 >gi|188524415|ref|ZP_03004436.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273773|ref|ZP_03206307.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|195659873|gb|EDX53253.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249528|gb|EDY74310.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 1442 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121 I+ E + D + + + F N +AHN FD+ FIN L + +PL + Sbjct: 462 TNISQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPL-KN 518 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDTL I+R +P + L ++CK+Y + + H A D+ +L+DV+ M Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571 >gi|291537849|emb|CBL10960.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis XB6B4] Length = 226 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 15/180 (8%) Query: 3 RKNKMR------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 RK K R +++D+ETTG+ S D +IEI AV++ + + F + P GR Sbjct: 5 RKGKQRREYVPDYVLYDLETTGISSLYDEVIEISAVKVRNGKIVDE-FSELVNP-GRPIP 62 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINK 115 A ++ I+D+ +++ SF + EF F + HN FD+ F+ + ++ Sbjct: 63 YAASSVNNISDKMVENARSFEKVLPEFLAFAGDD--VLAGHNIAGFDMKFLYRDCEKYFG 120 Query: 116 DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L + IDTL+IA+ P ++ L+ L + YGI S + H AL D + V+ M Sbjct: 121 QTL-TNDYIDTLAIAKLCFPEWKHRRLSDLAEHYGI--STKGAHRALADCRMNQQVFELM 177 >gi|291537711|emb|CBL10823.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis M50/1] Length = 226 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 15/180 (8%) Query: 3 RKNKMR------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 RK K R +++D+ETTG+ S D +IEI AV++ + + F + P GR Sbjct: 5 RKGKQRREYVPDYVLYDLETTGISSLYDEVIEISAVKVRNGKIVDE-FSELVNP-GRPIP 62 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINK 115 A ++ I+D+ +++ SF + EF F + HN FD+ F+ + ++ Sbjct: 63 YAASSVNNISDKMVENARSFEKVLPEFLAFAGDD--VLAGHNIAGFDMKFLYRDCEKYFG 120 Query: 116 DPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L + IDTL+IA+ P ++ L+ L + YGI S + H AL D + V+ M Sbjct: 121 QTL-TNDYIDTLAIAKLCFPEWKHRRLSDLAEHYGI--STKGAHRALADCRMNQQVFELM 177 >gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum SK46] gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum SK46] Length = 529 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 17/205 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL +KND IIEIGA++ KT TF F+ P G + L GIT Sbjct: 23 FVVVDLETTGLKAKNDHIIEIGAIKTR-GGKTIGTFSSFIDP-GMEIPDHITSLTGITTA 80 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P ++ ++F +F + + W+AHNAKFD+GF+ + D PS ++DTL+ Sbjct: 81 DVETAPQLGTVITQFLEF--ARGSVWVAHNAKFDIGFLRQACTDLGLDWPSPS-VVDTLT 137 Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +ARR L+ L + G +R H AL D+ DV +M Sbjct: 138 LARRVLDRSQVGSFKLSQLARYVG--SPNRPAHRALDDAIATVDVLHYLME-------RL 188 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 E + E P ++ R K Sbjct: 189 AVYEVQTASELVHYSPTVAPEVRAK 213 >gi|217077387|ref|YP_002335105.1| DNA polymerase III PolC [Thermosipho africanus TCF52B] gi|217037242|gb|ACJ75764.1| DNA polymerase III, alpha subunit, Gram-positive type [Thermosipho africanus TCF52B] Length = 1365 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 17/212 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD+ETTG +++ D IIE GAV+ D + TF+ F+ PN + + KL GIT++ Sbjct: 348 YTVFDLETTGTNARFDEIIEFGAVKYKDGKIID-TFKSFVKPN-KDINDFTQKLTGITND 405 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P + +F +F + +AHNA FD GFI +++ L +DTL Sbjct: 406 MLKDAPGIEEVVPKFLEFI--EGTVLVAHNADFDYGFIREVYRKMYDKDLIM-PYLDTLK 462 Query: 129 IARRKHPS--SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +++ L L + + + H H A D+ + ++++ K++ ++ G Sbjct: 463 LSKVILKGKVKSFGLGKLVEYFKLGPFKH---HRAFEDASVTAELFGKLVELLGKM--GI 517 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 K+ D + ++ +I R K +F IT Sbjct: 518 KSLNDINKLKAGTSISSI----RTKRVFNHIT 545 >gi|332202187|gb|EGJ16256.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA41317] Length = 1463 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|149011144|ref|ZP_01832449.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75] gi|147764780|gb|EDK71710.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75] Length = 1463 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|148988015|ref|ZP_01819478.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73] gi|147926479|gb|EDK77552.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73] Length = 1463 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|15900208|ref|NP_344812.1| DNA polymerase III PolC [Streptococcus pneumoniae TIGR4] gi|111658314|ref|ZP_01409003.1| hypothetical protein SpneT_02000504 [Streptococcus pneumoniae TIGR4] gi|21263563|sp|Q97SQ2|DPO3_STRPN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|14971745|gb|AAK74452.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae TIGR4] Length = 1463 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|298256053|ref|ZP_06979639.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502091|ref|YP_003724031.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|298237686|gb|ADI68817.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] Length = 1463 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|194397447|ref|YP_002036972.1| DNA polymerase III PolC [Streptococcus pneumoniae G54] gi|194357114|gb|ACF55562.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae G54] Length = 1463 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|148973897|ref|ZP_01811430.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3] gi|145965594|gb|EDK30842.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3] Length = 213 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 66/215 (30%), Positives = 101/215 (46%), Gaps = 14/215 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + IV D ETTGL DR IEIGAV+L++ + TFQ + P G + S Sbjct: 1 MAPHSADSVIVLDFETTGLSPNMGDRAIEIGAVKLVNG-EVVDTFQQLMNP-GFRVSGFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ L S + EF DF Q+++ +AHNA FD F++AEL I +D Sbjct: 59 EGYTGITNRMLSTAASCGEVMDEFADFI--QDSQLVAHNASFDKRFLDAELDYIGRDY-- 114 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + ++ IARR + + L L + I + H AL DS + + +++ +M+ Sbjct: 115 NGQFACSMLIARRLIQDAPTHKLGDLVRFKSIDNDG-TFHRALADSEMTARLWL-LMIDE 172 Query: 179 SQINFGFKTNE----DRFFKEEKKTVPNISLLKRD 209 Q + G + K K +P + + RD Sbjct: 173 LQSDHGIHQPSFQLMQKISKTAKGAIPKLLMSSRD 207 >gi|168493969|ref|ZP_02718112.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC3059-06] gi|183576230|gb|EDT96758.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC3059-06] gi|332077575|gb|EGI88036.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA41301] Length = 1463 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|13357937|ref|NP_078211.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762156|ref|YP_001752460.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|13959349|sp|Q9PQB4|DPO3_UREPA RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|11279168|pir||C82898 DNA polymerase III alpha chain 1 UU377 [imported] - Ureaplasma urealyticum gi|6899360|gb|AAF30786.1|AE002135_2 DNA polymerase III alpha chain 1 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827733|gb|ACA32995.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 1442 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 5/167 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL D IIE GAV + + + Q F+ P ++ + L I+ E Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFIKP-IQQINENVTNLTNISQE 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + + + F++ +AHN FD+ FIN L + +PL + IDTL Sbjct: 468 MVNNAIDEKTALLKIKEIFDDH--ILVAHNGINFDINFINQRLLKWGLEPL-KNPSIDTL 524 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I+R +P + L ++CK+Y + + S H A D+ +L+DV+ M Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDESAHRADYDAIVLADVFKVM 571 >gi|332204293|gb|EGJ18358.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA47901] Length = 1463 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|168576299|ref|ZP_02722182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae MLV-016] gi|307066950|ref|YP_003875916.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200] gi|183577861|gb|EDT98389.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae MLV-016] gi|306408487|gb|ADM83914.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200] Length = 1463 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|15902295|ref|NP_357845.1| DNA polymerase III PolC [Streptococcus pneumoniae R6] gi|116515846|ref|YP_815772.1| DNA polymerase III PolC [Streptococcus pneumoniae D39] gi|32469721|sp|Q8DRA5|DPO3_STRR6 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|122279342|sp|Q04MH6|DPO3_STRP2 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|15457800|gb|AAK99055.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae R6] gi|116076422|gb|ABJ54142.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae D39] Length = 1463 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|307126490|ref|YP_003878521.1| DNA polymerase III subunit alpha, Gram-positive type [Streptococcus pneumoniae 670-6B] gi|306483552|gb|ADM90421.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae 670-6B] gi|332076720|gb|EGI87182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA17545] Length = 1463 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|168484148|ref|ZP_02709100.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1873-00] gi|172042563|gb|EDT50609.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1873-00] Length = 1463 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|325686582|gb|EGD28608.1| DNA polymerase III PolC [Streptococcus sanguinis SK72] Length = 1462 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 8/164 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + + +I++ A ++ + F F+ P G S L GITDE Sbjct: 424 YVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTDLTGITDE 481 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ + EF +F Q++ +AHNA FDVGF+N +R N P +IDTL Sbjct: 482 HVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHNL-PKITQPVIDTLE 538 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 AR +P R+ L L KR+ I + H H A D+ + Sbjct: 539 FARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|225860309|ref|YP_002741818.1| DNA polymerase III PolC [Streptococcus pneumoniae Taiwan19F-14] gi|298229634|ref|ZP_06963315.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada MDR_19F] gi|225727760|gb|ACO23611.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae Taiwan19F-14] Length = 1463 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|182683255|ref|YP_001835002.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14] gi|303255179|ref|ZP_07341253.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455] gi|182628589|gb|ACB89537.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14] gi|301801215|emb|CBW33889.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV200] gi|302597812|gb|EFL64884.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455] Length = 1463 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|227529104|ref|ZP_03959153.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540] gi|227350948|gb|EEJ41239.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540] Length = 1442 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 9/190 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FD+ETTGL + D++IE+ A ++ D + F F+ P G S + Sbjct: 418 TPLDGQTYVIFDVETTGLSAIYDKVIELSASKMKDG-EVLERFDEFIDP-GFPLSEQTTN 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE ++ S +F F DF + HN FD+GF+N +R N + + + Sbjct: 476 LTSITDEMVQGSKSEEEVFRMFRDFC--EGCIIAGHNVSFDMGFMNTGYRRHNMEEI-TA 532 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL +AR +P R LN+L K++ + + H H A D+ + + + + ++ Sbjct: 533 PVIDTLPLARFLYPHMRGYRLNTLSKKFKVALEHH--HRANYDAEATGKL-LHIFLKDAE 589 Query: 181 INFGFKTNED 190 +G K D Sbjct: 590 KRYGIKLISD 599 >gi|114707953|ref|ZP_01440845.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Fulvimarina pelagi HTCC2506] gi|114536582|gb|EAU39714.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Fulvimarina pelagi HTCC2506] Length = 466 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 7/169 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 VFD ETTGL D I++IGA+ ++D TF + P G + K+HGITD Sbjct: 274 YCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGG-PIPRASSKIHGITD 332 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + +P + F++F + + +AHNA FD+ F+ + + P I+DT+ Sbjct: 333 KMVMGQPRIAEAGRRFFEF--SKESVLVAHNAPFDMSFLRRHEKAMGVAFDHP--IVDTV 388 Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ + R+ L+ +C+R GI I + +H AL D+ + ++ +M+ Sbjct: 389 LVSAIIFGTTERHMLDVVCERLGIRIEKKDRHTALGDARVTAEAMKRML 437 >gi|301793541|emb|CBW35916.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV104] Length = 1463 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|149006027|ref|ZP_01829756.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP18-BS74] gi|147762383|gb|EDK69344.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP18-BS74] Length = 1463 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|332359968|gb|EGJ37782.1| DNA polymerase III PolC [Streptococcus sanguinis SK1056] Length = 866 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 417 MELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAE-FDEFINP-GHPLSAFTTD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ + EF +F Q++ +AHNA FDVGF+N +R P Sbjct: 475 LTGITDEHVRNAKPLEQVLKEFQEFC--QDSVLVAHNATFDVGFMNVNYERHGL-PKITQ 531 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ I + H H A D+ + Sbjct: 532 PVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAEATGRLL 580 >gi|85057593|ref|YP_456509.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom phytoplasma AYWB] gi|84789698|gb|ABC65430.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom phytoplasma AYWB] Length = 1572 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 91/169 (53%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D+IIEI +++ + +K FQ F+ P +K + + ITDE Sbjct: 481 YVVFDLETTGLSNVRDKIIEIAGIKIKNGNKIGE-FQKFIDPQ-QKLTKTITNITNITDE 538 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ + + + +F F ++ +AHNA FDV F+ + + + L+P IIDT++ Sbjct: 539 MLQGQQTIDQVLPQFLAF--AKDCVLVAHNASFDVDFLKEKAKELKIS-LEPKPIIDTMA 595 Query: 129 IARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++R + L L + + + H AL D+ S+++IKM+ Sbjct: 596 LSQRYFSNLLKYFSLKRLATVFKVKLEDH--HRALADATATSEIFIKMI 642 >gi|294507448|ref|YP_003571506.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8] gi|294343776|emb|CBH24554.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8] Length = 563 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG +DRI+EIGAV++ D + +R FQ + P + K+ GIT Sbjct: 8 FVVTDLETTGTTPDDDRIMEIGAVKVRDGAVVDR-FQQLVNPQ-QSVPGRITKMTGITTG 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P + ++ F + +AHN FD F++AELQR+ + L P+ + T+ Sbjct: 66 MVFEAPPADEVLPDYRAFLG--DGILVAHNVSFDGSFLDAELQRMGDETL-PNETLCTVR 122 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +ARR P + L+ L + Y I + R H AL D+ S V + + SQ+ F Sbjct: 123 LARRLLPGLDSKGLSRLAQFYDIDVEGR--HRALGDAEATSVVLRRFV---SQLAF 173 >gi|320547752|ref|ZP_08042036.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812] gi|320447512|gb|EFW88271.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812] Length = 1464 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + N+ +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G S + Sbjct: 419 LELNEATYVVFDVETTGLSAVHNDLIQIAASKMYKGNIVEQ-FDEFINP-GHHLSAFTTE 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD +++ + F DF ++ +AHNA FDVGF+NA +R P Sbjct: 477 LTGITDNHVRNAKPIEQVLQMFQDFC--KDTVLVAHNATFDVGFMNANYKRHGM-PTITQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL +AR +P R+ L L KR+ +++ H H A D+ + Sbjct: 534 PVIDTLELARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 582 >gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 574 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 28/227 (12%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +++ +VFD+ETTG+ + I EIGAV++ F + P G P Sbjct: 14 TPLSQITFVVFDLETTGVSAGEHAITEIGAVKVRGGEVLGE-FGTLVDP-GSPIPPFISV 71 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD + P S+ F +F + +AHNA FD+GFI A P Sbjct: 72 LTGITDTMVVAAPKIESVLPSFLEF--AEGTTLVAHNAGFDLGFIKAACAAHGYPP-PAH 128 Query: 122 RIIDTLSIARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++DT+ +AR+ + L++L + + +H AL D+ DV ++ Sbjct: 129 PVVDTVVLARKLLTRDEAPNCKLSTLARIFS---KTEPRHRALADAQATVDVLHALLERA 185 Query: 179 SQINFGFKTNED---------------RFFKEEKKTVPNISLLKRDK 210 +FG T E+ R + T P + + + ++ Sbjct: 186 G--SFGVHTLEELRGFVRAPTPEQRRKRHLADGVPTGPGVYVFEDER 230 >gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407] gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407] gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 324 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 19 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 77 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPTNKVIDTVF 133 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H AL D + VY K Sbjct: 134 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNALDDCITCAAVYQK 176 >gi|84496154|ref|ZP_00995008.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649] gi|84382922|gb|EAP98803.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649] Length = 572 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 14/210 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +V D+ETTG I EIGAV++ FQ F+ P G+ Sbjct: 13 TPLSDVTFVVVDLETTGGSPSECGITEIGAVKVRAGEVLGE-FQTFVNP-GQPIPAFISV 70 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD ++D P F +F + +AHNA FDV F+ A R +D Sbjct: 71 LTGITDAMVRDAPRVEPALVAFLEF--AAGSVLVAHNAGFDVSFLKAACGRAERDW-PSF 127 Query: 122 RIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++DT+ +AR+ + + L SL +G T + H AL D+ DV ++ Sbjct: 128 PVVDTVHLARQLVTRDEAPNHRLGSLAVLFGATTT--PDHRALHDARATVDVLHGLI--A 183 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKR 208 + G + E+ K VP + KR Sbjct: 184 RVGSLGVHSLEE--LKAYSSRVPAATRRKR 211 >gi|127512799|ref|YP_001093996.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] gi|126638094|gb|ABO23737.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4] Length = 204 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 9/174 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D ETTGL + DR IEIGAV+L +R FQ + P G S GIT+ Sbjct: 6 IVVLDFETTGLSPLQGDRAIEIGAVKLQQGVVVDR-FQQLMNP-GFAVSSFIADYTGITN 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L D PS ++ ++F DF Q +AHNA FD F+ AE RI+ + +L Sbjct: 64 AMLSDAPSCETVMADFADFI--QGCHLVAHNASFDQKFLTAEFARIDLE--QSQPFACSL 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +ARR + + L +L GI H AL D+ + +++ + SQ Sbjct: 120 LLARRLFQAVPNHQLGTLVNYLGIANDG-VFHRALNDAEVTGALWLALSDAVSQ 172 >gi|332980705|ref|YP_004462146.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1 BON] gi|332698383|gb|AEE95324.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1 BON] Length = 288 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL+ ND+IIE+ AV+ D +R F + P +++ ITDE Sbjct: 115 FVAIDLETTGLNPINDKIIEVAAVKFKDGQIIDR-FTTLINPEIH-IPSGITRINHITDE 172 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + + +F +++ + HNA FD+ F+ D + IDTL Sbjct: 173 MVKDAPVLAEVMPCLVNFI--EDSILVMHNASFDLKFLKHHAMNFGHDI--NNSYIDTLP 228 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 R L ++ GI S H A D+ + V IK + Sbjct: 229 TCRNIFSGLENYKLPTIASHLGI--CGDSFHRACNDAEICGQVLIKCIE 275 >gi|223933907|ref|ZP_03625870.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591] gi|223897433|gb|EEF63831.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591] Length = 1463 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S L GITDE Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + EF DF Q++ +AHNA FDVGF+N +R P+ +IDTL Sbjct: 483 HVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTLE 539 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 AR +P R+ L L KR+G+ + H H A D+ + + Sbjct: 540 FARNLYPDFKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLLFTFL 585 >gi|325001618|ref|ZP_08122730.1| hypothetical protein PseP1_22781 [Pseudonocardia sp. P1] Length = 403 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 89/223 (39%), Gaps = 15/223 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + V D+ETTG + D I E+GAV + + P G + + + Sbjct: 18 TPLRDVTFCVVDLETTGGSHRADAITEVGAVSVRGGESIGE-LSTLVDP-GTRVPADVTR 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT+ L P ++ D + + +AHNA FD GF+ A +R + P Sbjct: 76 LTGITNGMLAGAPPLGAVLPPVLDLL--RGSVLVAHNAPFDTGFLRAACERHER-PWPSP 132 Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ T +AR P L +L +G + H AL D+ +V ++ Sbjct: 133 PVLCTARLARAVLPRSECPSVRLGALAAHFGCRTT--PDHRALTDARATVEVLHHLLE-- 188 Query: 179 SQINFGFKTNED--RFFKEEKKTVPNISLLKRDKPLFTRITKE 219 N G ++ E+ + K+ P + +R L R+ E Sbjct: 189 RIGNLGVQSLEELLQLVKDRAPHRPTTAQRQRRH-LAKRVPSE 230 >gi|330448476|ref|ZP_08312124.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492667|dbj|GAA06621.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 214 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 10/180 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D ETTGL + DR IEIGAV+L + + FQ + P G + S GI++ Sbjct: 18 VILDFETTGLSPNQGDRAIEIGAVKLQNGEVVGQ-FQQLMNP-GFRVSSFIEGYTGISNN 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ PS + +EF DF +A +AHNA FD F++AEL++IN+ ++ Sbjct: 76 MLRTAPSCDVVMNEFADFIG--DANLVAHNASFDQRFLDAELEQINRH--YGGTFTCSML 131 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 IARR + + L +L I + H AL DS + + +++ M+ Q +G +T Sbjct: 132 IARRLYQDAPNHKLGTLVDYKNI-YHNGVFHRALADSEMTARLWLVMLDDIKQ-QYGIET 189 >gi|253582216|ref|ZP_04859439.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium ATCC 27725] gi|251835755|gb|EES64293.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium ATCC 27725] Length = 1446 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 52/190 (27%), Positives = 99/190 (52%), Gaps = 14/190 (7%) Query: 1 MIRKNKM------RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M+R +K +VFD+ET GL+S IIEIGAV+ L ++ + + P + Sbjct: 406 MVRSSKDIPIEEENFVVFDLETMGLNSHEHEIIEIGAVK-LQGTRIVERYSQLVNPK-KT 463 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 + +L I+ + + + P+ + +F +F ++ +AHNA FD+GFI ++++I Sbjct: 464 IPKKIQELTNISQDMVDNMPTIEEVLPKFMEFVG--DSTMVAHNAPFDMGFIRRDVKKIM 521 Query: 115 KDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P+ +IDTL +AR +P + L +L K G+++ + H A+ DS ++++I Sbjct: 522 GYDYKPA-VIDTLQMARDLYPELKAYGLKNLNKVLGLSLDNH--HRAVDDSQATANMFII 578 Query: 174 MMVGGSQINF 183 + ++ Sbjct: 579 FIEKYMEMGI 588 >gi|251796459|ref|YP_003011190.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. JDR-2] gi|247544085|gb|ACT01104.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. JDR-2] Length = 953 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 8/178 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D+ETTG +D I+++G L D + T+ F+ P + +L GI Sbjct: 1 MKFAVLDLETTGHSVSDD-ILQVGLAVLDDNLEIVETYSSFVRPTI-EIPAFITQLTGID 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P + + + ++A +AHN FD GF+N L R P R +DT Sbjct: 59 ADMVADAPELDEVLMQLIPYL--EDAVLVAHNVNFDAGFLNQALDRCGYHPFI-GRRLDT 115 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + R +PS + L ++ + +GI +H H A D+ ++++ + + Q+ Sbjct: 116 IELLRILYPSITTYQLGAVTELFGI--AHDQHHRADSDAIATAELFAQSVQKLRQLPL 171 >gi|193213751|ref|YP_001994950.1| hypothetical protein Ctha_0031 [Chloroherpeton thalassium ATCC 35110] gi|193087228|gb|ACF12503.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC 35110] Length = 578 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 13/209 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG +RIIEI A++ + + + + P ++ S + GIT+ Sbjct: 24 FAVVDLETTGGLKPENRIIEICAIKCRNGQEVG-MLESLVNPE-QQISYFISQYTGITNS 81 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P S+ ++ +FF E ++AHN FD+GFIN EL+R L +R + T Sbjct: 82 MVDNAPVIQSLLTKVSEFFQE--TIFVAHNVPFDMGFINMELERNGYAKL-TNRWLCTFR 138 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR P + +L L K +GI + +R H A D + ++++ +Q G +T Sbjct: 139 LARRLLPTQQKKNLGDLAKYFGIIVENR--HRARGDCEATIKLLAELII-LAQEQHGVET 195 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 E+ + K I KR+ F++I Sbjct: 196 AEELLSLQFKA----IRNFKREPRHFSKI 220 >gi|302389800|ref|YP_003825621.1| DNA polymerase III catalytic subunit, PolC type [Thermosediminibacter oceani DSM 16646] gi|302200428|gb|ADL07998.1| DNA polymerase III catalytic subunit, PolC type [Thermosediminibacter oceani DSM 16646] Length = 1415 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 9/161 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTGL D IIEIGAV++ +R F F+ P GR S L GI + Sbjct: 404 YVVTDIETTGLSLDADEIIEIGAVKVYRGQIIDR-FHSFVNP-GRPISSHITNLTGINNA 461 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + S+F F N ++AHNA+FD GFI + ++ ++++DTL+ Sbjct: 462 MVSQAPPVKDVMSDFLRFIG--NGIFVAHNAEFDAGFIRRDCKKFGMKF--DNKVMDTLN 517 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLS 168 ++ P +N L+++ K++ I + S H A D++ + Sbjct: 518 LSALVFPELKNHRLDTIAKKFNINM--GSHHRAGDDANTTA 556 >gi|257469515|ref|ZP_05633607.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] gi|317063759|ref|ZP_07928244.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] gi|313689435|gb|EFS26270.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] Length = 1446 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 95/179 (53%), Gaps = 14/179 (7%) Query: 1 MIRKNKM------RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRK 54 M+R +K +VFD+ET GL+S IIEIGAV+ L ++ + + P + Sbjct: 406 MVRSSKDALIEEESFVVFDLETMGLNSHEHEIIEIGAVK-LQGTRIVERYSQLVNPK-KP 463 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 + +L I+ + + + P+ + +F +F ++ +AHNA FD+GFI ++++ Sbjct: 464 IPKKIQELTNISQDMVDNMPTIEEVLPKFMEFVG--DSTMVAHNAPFDMGFIRRDVKKFM 521 Query: 115 KDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P+ +IDTL +AR +P + L +L K G+++ + H A+ DS ++++I Sbjct: 522 GYDYKPA-VIDTLQMARDLYPELKAYGLKNLNKVLGLSLDNH--HRAVDDSQATANMFI 577 >gi|332637692|ref|ZP_08416555.1| DNA polymerase III PolC [Weissella cibaria KACC 11862] Length = 1440 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 11/205 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + D++IE+ AV+++ + F F+ P G S + Sbjct: 417 TKLDEAEFVVFDVETTGLSAVYDKVIELSAVKMVKGNVIAE-FSEFIDP-GFPLSQTTVD 474 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITD+ ++ +F EF +F+ +A + HN FD+GF+ R P+ + Sbjct: 475 LTSITDDMVRGSKPEKQVFEEFREFYG--DAVLVGHNVTFDMGFMQEGYARHQLAPI-TN 531 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSD---VYIKMMVG 177 +IDTL +AR +P+ R LN+L K +GI + H A+ DS V+++ Sbjct: 532 PVIDTLILARFLYPNMRSYRLNTLAKHFGIVLEQH--HRAIFDSETTGHLNRVFLEQARE 589 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPN 202 I + + N+ + + Sbjct: 590 EYGIEYADQLNDHMMDNDAWRHGRP 614 >gi|189346954|ref|YP_001943483.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] gi|189341101|gb|ACD90504.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] Length = 214 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 9/177 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M R +V D ETTGL + DR IEIGAV L+++ + FQ + P G + S Sbjct: 1 MQRTLADSVVVLDFETTGLSPQYGDRAIEIGAV-LVEHGEIVDRFQKLMNP-GFRISSFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+E LK +P + +EF F +N +AHNA FD F++ EL+R + + Sbjct: 59 EGYTGITNEMLKGQPCCEEVMAEFSGFIAGRN--IVAHNASFDRRFLDFELKRAKR--VY 114 Query: 120 PSRIIDTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +L ++RR + S + L +L GI S H AL D+ + + +++ M+ Sbjct: 115 EGACCCSLLVSRRIYQDSPNHRLQTLVTHAGIP-ETGSFHRALADAEMTALLWMSMI 170 >gi|157692739|ref|YP_001487201.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus pumilus SAFR-032] gi|157681497|gb|ABV62641.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032] Length = 930 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 9/172 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 R +V DIETTG K D+II+I AV + + R + ++ P G+ +L G Sbjct: 3 DQRFVVVDIETTGNSPKKGDKIIQIAAVVIENGQIVER-YSKYVNP-GKPIPGFIEQLTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + D F I E +D Q A ++AHN FD+ F+N EL+ K+ LD I Sbjct: 61 IQQHMVDDAVFFEDIAQEVYDLI--QGAYFVAHNVHFDLNFLNDELKACGKNELDV-LAI 117 Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+ I+R +P L L + + + H H A D+ + + +++ ++ Sbjct: 118 DTVEISRILYPELEGYKLTELSEE--LMLPHDHPHRADSDAEVTAMLFLTLL 167 >gi|312865553|ref|ZP_07725780.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus downei F0415] gi|311099071|gb|EFQ57288.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus downei F0415] Length = 1468 Score = 161 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 9/190 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + ++ F F+ P G S Sbjct: 423 MDLHEATYVVFDVETTGLSAVNNSLIQIAASKMHKGNIIDQ-FDEFINP-GHPLSQFTTD 480 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD LKD + EF +F Q+ +AHNA FDVGF+NA +R + PL Sbjct: 481 LTGITDNHLKDAKPLLQVLEEFQEFC--QDTVLVAHNATFDVGFMNANYERHDL-PLISQ 537 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ + + H H A D+ + + + ++ Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALDHH--HMANYDAEATGRLLF-IFIKEAR 594 Query: 181 INFGFKTNED 190 N G D Sbjct: 595 ENRGITDLAD 604 >gi|227536604|ref|ZP_03966653.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] gi|227243681|gb|EEI93696.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33300] Length = 469 Score = 161 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 20/220 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + N I EI A+ L D + ++Q + P+ ++ L GIT E Sbjct: 13 YAIVDIETTGGYAANSGITEI-AIYLHDGHQVIDSYQTLINPH-KEIPYHIQMLTGITPE 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D PSF + ++ + F +N ++AHN FD FI A L+ P + T+ Sbjct: 71 MLTDAPSFEDVAADIYSFL--ENKVFVAHNVNFDYSFIYAHLKACGYQWKSP--KLCTVR 126 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG--- 184 +AR S L +LC+R I IS R H A D+ ++ +++ + Sbjct: 127 LARNIFKGFSSYSLGNLCQRLDIPISDR--HRAAGDAKATVILFERILSQDTDGLIDSFL 184 Query: 185 --------FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 T+ D+ E P I + K +K + Sbjct: 185 QTHAKEQLLPTHIDKMVFERLPAKPGIYIFKNNKGKIIYV 224 >gi|255070749|ref|XP_002507456.1| exonuclease and DNA helicase [Micromonas sp. RCC299] gi|226522731|gb|ACO68714.1| exonuclease and DNA helicase [Micromonas sp. RCC299] Length = 1473 Score = 161 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 21/215 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGL+ +RIIEI AV + D T++ + P P + L GIT+ Sbjct: 296 VVFDLETTGLNKDRNRIIEIAAVNVSD--PTHQPMSTLVNPGRFAVPPPVVALTGITNAM 353 Query: 70 L---------KDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLD 119 + + F E + AHNA+ FD GF+ AE +R+ ++ + Sbjct: 354 VSAPAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAEYRRLGRELPE 413 Query: 120 PSRIIDTLSIARRKH-----PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R +DTL +AR+ P L SL +G+ + S H A D+ +L DV ++ Sbjct: 414 DWRFVDTLPLARKTLAKEAVPGGSYKLESLAAHFGVDTAGASAHRAEADARMLGDVLQRL 473 Query: 175 ----MVGGSQINFGFKTNEDRFFKEEKKTVPNISL 205 + G + + E E + S Sbjct: 474 VGCSLEGTAGTSIAADDVEHSELAEALSAMKTYSF 508 >gi|188024469|ref|ZP_02997117.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188018579|gb|EDU56619.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 7 str. ATCC 27819] Length = 1442 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 5/173 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121 I+ E + D + + + F N +AHN FD+ FIN L + +PL + Sbjct: 462 TNISQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPL-KN 518 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDTL I R +P + L ++CK+Y + + H A D+ +L+DV+ M Sbjct: 519 PSIDTLMILRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571 >gi|153815178|ref|ZP_01967846.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756] gi|145847437|gb|EDK24355.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756] Length = 279 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 63/214 (29%), Positives = 96/214 (44%), Gaps = 19/214 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTGLD N+ IIEIGA+++ D K + F F+ P SP L GI+++ Sbjct: 39 YIAFDLETTGLDPMNNEIIEIGALKVRDG-KVSERFMEFIKPQ-ELISPAITGLTGISND 96 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S+ ++F DF E I HN FD F R IDTL Sbjct: 97 MVASARPARSVITDFIDFCEED--ILIGHNIIFDYSFTKCTAAREGLPFEKMG--IDTLK 152 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 IA++ HP L++LC+ Y I +++ H A D+ + +Y + + F+ Sbjct: 153 IAKKVHPELESKSLSALCEHYKIE--NKAAHRAYFDALATAKLYQTL-------SHYFEP 203 Query: 188 NEDRFFKEEK---KTVPNISLLKRDKPLFTRITK 218 + + FK + K + L R+TK Sbjct: 204 DNPKTFKPSQLTYKIRKPQPATPKQLALLERLTK 237 >gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar chinensis CT-43] Length = 315 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPTNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H AL D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNALDDCITCAAVYQK 167 >gi|83310642|ref|YP_420906.1| DNA polymerase III [Magnetospirillum magneticum AMB-1] gi|82945483|dbj|BAE50347.1| DNA polymerase III [Magnetospirillum magneticum AMB-1] Length = 412 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64 + +VFD ETTGL + D+I+ I V +++ +F + P GR E+++ HG Sbjct: 217 LTFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNP-GRPIPAESIRYHG 275 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD+ + DKP + +F + +A +AHNA FD+ F+ + + P ++ Sbjct: 276 ITDDMVVDKPPAGVVLPQFRSYVA--DAVLVAHNAAFDLKFLRMREKDMGIRFDIP--VL 331 Query: 125 DTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 DT+ ++ P + + L+ +C RYGI I+ R H AL D+ + + V ++ + Sbjct: 332 DTMILSNFLDGPDAGHSLDDICDRYGIEITDR--HTALGDAMVTAAVLLRQIEA 383 >gi|330833568|ref|YP_004402393.1| DNA polymerase III PolC [Streptococcus suis ST3] gi|329307791|gb|AEB82207.1| DNA polymerase III PolC [Streptococcus suis ST3] Length = 1463 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 8/164 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S L GITDE Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + EF DF Q++ +AHNA FDVGF+N +R P+ +IDTL Sbjct: 483 HVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTLE 539 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 540 FARNLYPDFKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|323191554|gb|EFZ76814.1| DNA polymerase III subunit epsilon domain protein [Escherichia coli RN587/1] Length = 155 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 63/152 (41%), Positives = 92/152 (60%), Gaps = 11/152 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP+F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYI--RGAELVIHNATFDIGFMDYEFSLLKRDIPKTNT 123 Query: 123 II---DTLSIARRKHPSSRNDLNSLCKRYGIT 151 D+L++AR+ P RN L++LC RY I Sbjct: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEID 155 >gi|319939893|ref|ZP_08014248.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV] gi|319810904|gb|EFW07223.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV] Length = 1464 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 419 MELKEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTD 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +K+ + EF DF Q+ +AHNA FDVGF+N +R P Sbjct: 477 LTGITDEHVKNAKPLEQVLQEFQDFC--QDTVLVAHNATFDVGFMNVNYERHGL-PRITQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + ++ Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFINDAAE 591 >gi|291301852|ref|YP_003513130.1| DNA polymerase III subunit epsilon [Stackebrandtia nassauensis DSM 44728] gi|290571072|gb|ADD44037.1| DNA polymerase III, epsilon subunit [Stackebrandtia nassauensis DSM 44728] Length = 578 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 14/212 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +++ +V D+ETTG+ S I EIGAV++ + + P G Sbjct: 19 TPLSEVTFMVVDLETTGVASDACSITEIGAVKVRGGEVLGE-YATLVNP-GEAIDARISA 76 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD + D P+ + F +F + A W+AHNA FDVGF+ + + P Sbjct: 77 LTGITDAMVADAPAIEEVLPSFLEF--ARGAVWVAHNAPFDVGFLRSACAQAEL-PWPRP 133 Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +++DT+ +ARR L++L + +G + + H AL D+ DV ++ Sbjct: 134 QVVDTVVLARRLVDRSEVPNKRLSTLARYFGARV--KPSHRALDDARATVDVLHALLERL 191 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 T+ED + ++ +P K+ Sbjct: 192 G--THYVLTDED--LADFQRVIPAAERRKKRH 219 >gi|327405996|ref|YP_004346834.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823] gi|327321504|gb|AEA45996.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM 16823] Length = 458 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 24/244 (9%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + DIETTG +K+ +I EI + D K +F + P +L GI Sbjct: 1 MNYAIVDIETTGGSTKSSKITEIAIYKH-DGMKIIDSFDTLVNPE-MPIPEFISRLTGIH 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +++ P F I + +F ++ ++AHN FD G I E + + D + T Sbjct: 59 DDMVENAPKFYEIAKQIIEF--TEDCIFVAHNVGFDYGIIRHEFKLLGYDY--RKAHLCT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---------MV 176 + +R P L L K GI + R H A D+ + ++ + Sbjct: 115 VRASRYVIPDHESYSLGKLTKALGIQLIGR--HRAKGDAEATAHLFTLLHTTDSKGLQTF 172 Query: 177 GGSQINFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE-----LDEHDKTIQT 230 +IN N D EE P I D I K + +++H K ++T Sbjct: 173 IQEEINPKILHPNLDLETLEEIPNKPGIYKFYNDTNQLIYIGKSKHIKKRIEQHLKNVKT 232 Query: 231 LGKN 234 L + Sbjct: 233 LKGS 236 >gi|183602347|ref|ZP_02963713.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019] gi|241191299|ref|YP_002968693.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196705|ref|YP_002970260.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218266|gb|EDT88911.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019] gi|240249691|gb|ACS46631.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251259|gb|ACS48198.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794292|gb|ADG33827.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis V9] Length = 188 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 87/167 (52%), Gaps = 7/167 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M I D+ETTG ++NDRI EIGAV++ D +R F + P GR+ S +L GI Sbjct: 8 PMNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDR-FTQLVNP-GRRVSARITELTGI 65 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRII 124 ++E L+D+P I +F + +N + HN KFD+ F+ A +R+ D R I Sbjct: 66 SNEMLEDQPVIEDILGDFIHW--TENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPI 123 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 DT+ I R PS R+ L L +RYGI +H AL D+ Sbjct: 124 DTMHIDRLLFPSERHRLVDLIQRYGI--GDVEEHRALSDATQTYQCL 168 >gi|118466522|ref|YP_881505.1| hypothetical protein MAV_2300 [Mycobacterium avium 104] gi|118167809|gb|ABK68706.1| DNA polymerase III, epsilon subunit [Mycobacterium avium 104] Length = 643 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 26/228 (11%) Query: 4 KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +V D+ETTG S + D I EIGAV++ D F + P R P Sbjct: 35 LRDTTFVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGE-FATLVDPQ-RSIPP 92 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKD 116 + ++L GIT + D P+ ++ F +F ++ A +AHNA FDVGF+ A Q+ + Sbjct: 93 QIMRLTGITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIA 152 Query: 117 PLDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P R++ T+ +ARR + + L SL + + +T + H AL D+ DV Sbjct: 153 WPRP-RVLCTVRLARRVLSREEAPSVRLASLARLFAVTT--QPTHRALDDARATVDVLHA 209 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 ++ N G T + + + +P+++ +R K R+ E L Sbjct: 210 LIERVG--NQGVHT-----YADLRGYLPDVTPAQRRK----RVLAEGL 246 >gi|315222325|ref|ZP_07864231.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211] gi|315188658|gb|EFU22367.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211] Length = 1456 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + + +I++ A ++ + F F+ P G S Sbjct: 411 MELKEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTD 468 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +K+ + EF DF Q+ +AHNA FDVGF+N +R P Sbjct: 469 LTGITDEHVKNAKPLEQVLQEFQDFC--QDTVLVAHNATFDVGFMNVNYERHGL-PRITQ 525 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + ++ Sbjct: 526 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFINDAAE 583 >gi|225550655|ref|ZP_03771604.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379809|gb|EEH02171.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 1442 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121 I E + D + + + F N +AHN FD+ FIN L + +PL+ + Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLE-N 518 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDTL I+R +P + L ++CK+Y + + H A D+ +L+DV+ M Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571 >gi|146319608|ref|YP_001199320.1| DNA polymerase III PolC [Streptococcus suis 05ZYH33] gi|146321806|ref|YP_001201517.1| DNA polymerase III PolC [Streptococcus suis 98HAH33] gi|253752606|ref|YP_003025747.1| DNA polymerase III PolC-type [Streptococcus suis SC84] gi|253754432|ref|YP_003027573.1| DNA polymerase III PolC-type [Streptococcus suis P1/7] gi|253756365|ref|YP_003029505.1| DNA polymerase III PolC-type [Streptococcus suis BM407] gi|166217454|sp|A4W428|DPO3_STRS2 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|166217456|sp|A4VXT1|DPO3_STRSY RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|145690414|gb|ABP90920.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus suis 05ZYH33] gi|145692612|gb|ABP93117.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus suis 98HAH33] gi|251816895|emb|CAZ52544.1| DNA polymerase III PolC-type [Streptococcus suis SC84] gi|251818829|emb|CAZ56672.1| DNA polymerase III PolC-type [Streptococcus suis BM407] gi|251820678|emb|CAR47440.1| DNA polymerase III PolC-type [Streptococcus suis P1/7] gi|292559223|gb|ADE32224.1| DNA polymerase III, alpha subunit [Streptococcus suis GZ1] gi|319759021|gb|ADV70963.1| DNA polymerase III PolC [Streptococcus suis JS14] Length = 1463 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 8/164 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S L GITDE Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + EF DF Q++ +AHNA FDVGF+N +R P+ +IDTL Sbjct: 483 HVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTLE 539 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 540 FARNLYPDFKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|302024523|ref|ZP_07249734.1| DNA polymerase III PolC [Streptococcus suis 05HAS68] Length = 1463 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 8/164 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S L GITDE Sbjct: 425 YVVFDVETTGLSAVNNALIQIAASKMHKGNIIAE-FDEFIDP-GHPLSQFTTDLTGITDE 482 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + EF DF Q++ +AHNA FDVGF+N +R P+ +IDTL Sbjct: 483 HVRGSKPLEQVLREFQDFC--QDSVMVAHNATFDVGFMNVNYERAGL-PIISQPVIDTLE 539 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 540 FARNLYPDFKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|171920838|ref|ZP_02932008.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903036|gb|EDT49325.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 1442 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121 I E + D + + + F N +AHN FD+ FIN L + +PL+ + Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLE-N 518 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDTL I+R +P + L ++CK+Y + + H A D+ +L+DV+ M Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571 >gi|99078640|ref|YP_611898.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040] gi|99035778|gb|ABF62636.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040] Length = 479 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 7/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61 R +++ +VFD ETTGL D I+E+ A +L+ + F+ ++ P GR + K Sbjct: 267 RLSELNFVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDP-GRPIPAASTK 325 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG+ D + P ++ F DF Q+A +AHNA FD+G + + + P Sbjct: 326 IHGVRDADVAQSPRIEAVIPAFHDF--AQSAVLVAHNAPFDIGLLRQQEVQTGCSWDHP- 382 Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++ S+ + L++LC R I I R +H A D+ ++ I+++ Sbjct: 383 -VVDTVLLSALVFGISADHSLDALCSRLSIEIPARHRHTAKGDARATAEALIRLL 436 >gi|209554353|ref|YP_002284813.1| DNA polymerase III PolC [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541854|gb|ACI60083.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 1442 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121 I E + D + + + F N +AHN FD+ FIN L + +PL+ + Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLE-N 518 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDTL I+R +P + L ++CK+Y + + H A D+ +L+DV+ M Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571 >gi|225858122|ref|YP_002739632.1| DNA polymerase III PolC [Streptococcus pneumoniae 70585] gi|225720766|gb|ACO16620.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae 70585] Length = 1463 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEAIYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|169827550|ref|YP_001697708.1| ATP-dependent helicase dinG [Lysinibacillus sphaericus C3-41] gi|168992038|gb|ACA39578.1| Probable ATP-dependent helicase dinG [Lysinibacillus sphaericus C3-41] Length = 923 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 11/173 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ + + D+ETTG N DR+I+I V + D+ + RT+ F+ P G+ Sbjct: 1 MME--SQKYAIVDLETTGHSPANGDRMIQIAIVIMKDW-EIERTYTKFINP-GKAIPTFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L IT+E +KD F ++ + ++AHNA FD+ F+ AE +R P Sbjct: 57 QDLTHITNEDVKDSYPFEEHADYIYELLA--DCVFVAHNADFDLSFLQAEFKRAGL-PKW 113 Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + +DT+ +A+ P S L L I +++ H A D+ ++++ Sbjct: 114 QGKKMDTVELAKILFPMSLGFKLGDLAADLNIELAN--AHRADDDARATAELF 164 >gi|227498668|ref|ZP_03928812.1| DNA polymerase III [Acidaminococcus sp. D21] gi|226904124|gb|EEH90042.1| DNA polymerase III [Acidaminococcus sp. D21] Length = 225 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNG-RKNSPEALKLHGITD 67 +V DIETTGLD IIEIGAV + + + + R FQ FL P + SP L GITD Sbjct: 57 YVVIDIETTGLDVARSAIIEIGAVHVRNGAVSGR-FQTFLTPEPYQSLSPFITNLTGITD 115 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P+F I DF + HN FD+ F+ + R + L+ + +DT Sbjct: 116 SDLVGAPTFREILPRLRDFLG--GYTLVGHNVNFDINFLYDRIYRETGEHLN-NPYLDTK 172 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A+ P + L +LCK +GI +H H A+ D L V + Sbjct: 173 KLAKTVVPGLSHYSLEALCKHFGIAGNH---HRAVDDCELTEKVLDAL 217 >gi|149188690|ref|ZP_01866982.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio shilonii AK1] gi|148837600|gb|EDL54545.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Vibrio shilonii AK1] Length = 207 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 9/177 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ + +V D ETTGL + DR IEIGAV+L + + +R FQ + P G + S Sbjct: 1 MMLSSAKSVVVLDFETTGLSPNQGDRAIEIGAVKLENGTVVDR-FQSLMNP-GFRVSGFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GI++ L + PS + EF F +N+ +AHNA FD F++AEL+ IN+ Sbjct: 59 ENYTGISNAMLANAPSCKDVMGEFSTFI--KNSNLVAHNASFDKRFLDAELELINES--Y 114 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +L ++RR + + + L L + I H AL D+ + + +++ ++ Sbjct: 115 TGEFACSLLVSRRLNQEAHSHKLGDLVAYHNIANDG-VFHRALADAEVTASLWLLLV 170 >gi|330903518|gb|EGH34090.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. japonica str. M301072PT] Length = 147 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 66/147 (44%), Positives = 91/147 (61%), Gaps = 7/147 (4%) Query: 35 LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW 94 + T R F V+L P+ R++ A+ +HGIT+EFL KP F+ + EF++F + A+ Sbjct: 1 IGRRLTGRHFHVYLQPD-RESDEGAIGVHGITNEFLVGKPRFAEVADEFFEFI--KGAQL 57 Query: 95 IAHNAKFDVGFINAELQRIN----KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGI 150 I HNA FDVGFIN E + D ++DTL +AR +HP RN L++LCKRYG+ Sbjct: 58 IIHNAAFDVGFINNEFALMGSQDRADITQHCSVLDTLMMARERHPGQRNSLDALCKRYGV 117 Query: 151 TISHRSKHGALLDSHLLSDVYIKMMVG 177 S R HGALLDS +L+DVY+ M G Sbjct: 118 DNSGRELHGALLDSEILADVYLAMTGG 144 >gi|332293348|ref|YP_004431957.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332171434|gb|AEE20689.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 466 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 9/177 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M V D+ETTG +RI EI AV L D ++ F + P + P Sbjct: 1 MNETEPTYHCVIDVETTGKGINGNRITEICAVRLKDGEVVDK-FTSLVNPE-QYIPPFIT 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GI D + D P F+ I + A ++AHN FD + +E +R+ Sbjct: 59 NLTGIDDAMVADAPLFNEIADRIIEI--SSGAIFVAHNVTFDFNVLRSEFKRLGHSF--T 114 Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + T+ ++R+ PS L +LC GI +++R H A D+ ++ +++ Sbjct: 115 RKKLCTVRLSRKLIPSLFSYSLGNLCASIGIPLNNR--HRAEGDTDATVILFKRLLT 169 >gi|229075504|ref|ZP_04208492.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18] gi|228707600|gb|EEL59785.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18] Length = 318 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVF 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170 >gi|195867849|ref|ZP_03079848.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660426|gb|EDX53684.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 1442 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121 I E + D + + + F N +AHN FD+ FIN L + +PL+ + Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLE-N 518 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDTL I+R +P + L ++CK+Y + + H A D+ +L+DV+ M Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571 >gi|217973179|ref|YP_002357930.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223] gi|217498314|gb|ACK46507.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223] Length = 208 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 11/215 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M +V D ETTGL + DR IEIGAV + + T R F + P G + S Sbjct: 1 MPTSAANTLVVLDFETTGLSPNQGDRAIEIGAVLIENGVITQR-FSELMNP-GFRISRFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GI+++ L+D + + + F DF + N +AHNA FD F++AE +I L Sbjct: 59 EDYTGISNQMLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL- 115 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + +L +ARR + ++ N L +L RY + + H AL D+ + +++ M+ Sbjct: 116 -GQFGCSLLVARRLYQAAPNHQLGTLV-RYKQLPTDGTFHRALADAEMTGHLWLAMLADL 173 Query: 179 SQINFGFKTNEDRFFKE-EKKTVPNISLLKRDKPL 212 Q FG + ++ KKT ++ R + Sbjct: 174 QQ-EFGLCSPTFELLQKLAKKTKADVPKFLRQYAV 207 >gi|289177416|gb|ADC84662.1| DNA polymerase III, epsilon chain [Bifidobacterium animalis subsp. lactis BB-12] Length = 190 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 87/167 (52%), Gaps = 7/167 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M I D+ETTG ++NDRI EIGAV++ D +R F + P GR+ S +L GI Sbjct: 10 PMNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDR-FTQLVNP-GRRVSARITELTGI 67 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRII 124 ++E L+D+P I +F + +N + HN KFD+ F+ A +R+ D R I Sbjct: 68 SNEMLEDQPVIEDILGDFIHW--TENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPI 125 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 DT+ I R PS R+ L L +RYGI +H AL D+ Sbjct: 126 DTMHIDRLLFPSERHRLVDLIQRYGI--GDVEEHRALSDATQTYQCL 170 >gi|254774974|ref|ZP_05216490.1| hypothetical protein MaviaA2_09919 [Mycobacterium avium subsp. avium ATCC 25291] Length = 648 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 26/228 (11%) Query: 4 KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +V D+ETTG S + D I EIGAV++ D F + P R P Sbjct: 40 LRDTTFVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGE-FATLVDPQ-RSIPP 97 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKD 116 + ++L GIT + D P+ ++ F +F ++ A +AHNA FDVGF+ A Q+ + Sbjct: 98 QIMRLTGITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIA 157 Query: 117 PLDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P R++ T+ +ARR + + L SL + + +T + H AL D+ DV Sbjct: 158 WPRP-RVLCTVRLARRVLSREEAPSVRLASLARLFAVTT--QPTHRALDDARATVDVLHA 214 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 ++ N G T + + + +P+++ +R K R+ E L Sbjct: 215 LIERVG--NQGVHT-----YADLRGYLPDVTPAQRRK----RVLAEGL 251 >gi|229098054|ref|ZP_04229002.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29] gi|228685245|gb|EEL39175.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29] Length = 318 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVF 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170 >gi|312195665|ref|YP_004015726.1| DNA polymerase III epsilon subunit [Frankia sp. EuI1c] gi|311227001|gb|ADP79856.1| DNA polymerase III, epsilon subunit [Frankia sp. EuI1c] Length = 615 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 60/216 (27%), Positives = 89/216 (41%), Gaps = 21/216 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG I E GAV++ + F + + P L GITD Sbjct: 52 FVVFDLETTGTGPTTAEITEFGAVKVR-GGEVVAEFATLVRASTG-IPPLITVLTGITDA 109 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + + F +F Q +AHNA FD+ F+ A +R+ P+ +DT Sbjct: 110 MLATAPPLAEVLPAFLEFI--QGTVLVAHNAGFDLSFLKAACERVGY-PVPTWEHLDTAR 166 Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +ARR + S N L+SL + + H AL D+ DV + N G Sbjct: 167 LARRIVTRDESPNNKLSSLARLFRARTE--PCHRALADARATVDVLHGL--FERLGNLGV 222 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 T ED +S +R K R+ ++L Sbjct: 223 TTLEDVHA-----YSARVSPAQRRK----RVLADDL 249 >gi|237653313|ref|YP_002889627.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237624560|gb|ACR01250.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 769 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 12/204 (5%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61 +++ VFD ETTGL+ + D II++GA +L+ +F+ + P R +PE+ K Sbjct: 574 LSELSYTVFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPE-RPLAPESAK 632 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT E L+ +P+ + F F + IAHNA FD+ F+ + ++ P Sbjct: 633 IHGITSEMLRGQPTIDKVLPAFHAF--AADTVLIAHNAAFDMRFLQLKEEQTGLRFDHP- 689 Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL ++ HP + L ++ +R G+TI R H AL D+ + ++V++K++ ++ Sbjct: 690 -VIDTLLLSAVVHPNQESHRLEAIAERLGLTIVGR--HTALGDAIVTAEVFLKLIPLLAE 746 Query: 181 INFGFKTNEDRFFKEEKKTVPNIS 204 G +T D EK + Sbjct: 747 --KGIRTLRDAREAAEKTYYARVK 768 >gi|186701836|ref|ZP_02971504.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186701125|gb|EDU19407.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 1442 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 5/173 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++FDIETTGL D IIE GA+ + + + Q + P ++ + L Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFLVKP-IQQINENITNL 461 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121 I+ E + + + + + F+ N +AHN FD+ FIN L + +PL + Sbjct: 462 TNISQEMVNNAIDEKTALLKIKEIFD--NHILVAHNGINFDINFINQRLLKWGLEPL-KN 518 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDTL I+R +P + L ++CK+Y + + H A D+ +L+DV+ M Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEIAHRADYDAIVLADVFKVM 571 >gi|185178976|ref|ZP_02964733.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|225551037|ref|ZP_03771983.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209258|gb|EDU06301.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|225378852|gb|EEH01217.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 1442 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 5/173 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121 I E + D + + + F+ N +AHN FD+ FIN L + PL + Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFD--NHILVAHNGISFDINFINQRLLKWGLKPL-KN 518 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDTL I+R +P + L ++CK+Y + + H A D+ +L+DV+ M Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADVFKIM 571 >gi|299538599|ref|ZP_07051882.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1] gi|298726186|gb|EFI66778.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1] Length = 923 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 11/173 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ + + D+ETTG N DR+I+I V + D+ + RT+ F+ P G+ Sbjct: 1 MME--SQKYAIVDLETTGHSPANGDRMIQIAIVIMKDW-EIERTYTKFINP-GKAIPTFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L IT+E +KD F + ++ + ++AHNA FD+ F+ AE +R P Sbjct: 57 QDLTHITNEDVKDAFPFEAHADYIYELLA--DCVFVAHNADFDLSFLQAEFKRAGL-PKW 113 Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + +DT+ +A+ P S L L I +++ H A D+ ++++ Sbjct: 114 QGKKMDTVELAKILFPMSLGFKLGDLAADLNIELAN--AHRADDDARATAELF 164 >gi|313618186|gb|EFR90268.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria innocua FSL S4-378] Length = 931 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 9/171 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + K R IV D+ETTG + + DRII+ A ++ K T+ FL P + Sbjct: 1 MEQMKKKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE-KPIPAFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L GI+ + +K+ P F + ++ ++AHN FD F+ E+ R L Sbjct: 59 QELTGISPKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LG 115 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + +DT+ +AR +P L L +G + H H A D+ + +D Sbjct: 116 KMKKLDTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 164 >gi|312868001|ref|ZP_07728205.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parasanguinis F0405] gi|311096405|gb|EFQ54645.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parasanguinis F0405] Length = 1464 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + N+ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 419 LDLNEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVI-EEFDEFIDP-GHPLSAFTTQ 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT+E ++ + EF F + +AHNA FDVGF+NA +R P Sbjct: 477 LTGITNEHVRGAKPLVQVLKEFQAFC--EGTVLVAHNATFDVGFMNANYERHGL-PKITQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 534 PVIDTLEFARNLYPDFKRHGLGPLTKRFGVGLEHH--HMANYDAEATGRLL 582 >gi|150018035|ref|YP_001310289.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB 8052] gi|149904500|gb|ABR35333.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB 8052] Length = 1446 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 9/190 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG + ++I EIG +++ D ++ F F+ P + +++ ITD+ Sbjct: 423 YCVLDLETTGFSPQTEKITEIGVMKIKDGKVIDK-FSTFVNPQ-KSIPMRVVEVTKITDD 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + +F + +F + + +AHNA FD+GF+ + + + IDTL Sbjct: 481 MVKNAETIDKVFPKLLEFI--EGSVLVAHNADFDIGFLKHNAKVLGYEF--DFTYIDTLG 536 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P + L + K GI + H AL D V+ ++ + + Sbjct: 537 LAQDVFPDYKSYKLGRIAKNLGIKVE--VAHRALDDVDTTVKVFNIIIEKLKERGAQTLS 594 Query: 188 NEDRFFKEEK 197 + D + +E+ Sbjct: 595 DIDLYAADEE 604 >gi|78224248|ref|YP_385995.1| DNA polymerase III subunit epsilon [Geobacter metallireducens GS-15] gi|78195503|gb|ABB33270.1| DNA polymerase III, epsilon subunit [Geobacter metallireducens GS-15] Length = 218 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 9/177 (5%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K ++ D ETTGL DR IEIGAV + + +R FQ + P G++ S + G Sbjct: 3 KFTAVILDFETTGLSPGYGDRAIEIGAVLVRNNRIVDR-FQSLMNP-GKRVSGFIEEYTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E L P + F F N +AHNA FD F++AEL RI + Sbjct: 61 ITNEMLAKAPPAEQVMERFASFIAGHN--LVAHNASFDRRFLDAELSRIGRR--RTGDFA 116 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++ ARR + + + L +L + + H AL D+ + + ++ M+ + Sbjct: 117 CSMLAARRIYTNAPNHRLETLVSHLSLQ-TDGVFHRALADAEMTAQLWTAMIGELKE 172 >gi|153000864|ref|YP_001366545.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185] gi|160875572|ref|YP_001554888.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195] gi|151365482|gb|ABS08482.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185] gi|160861094|gb|ABX49628.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195] gi|315267759|gb|ADT94612.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678] Length = 208 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 63/211 (29%), Positives = 99/211 (46%), Gaps = 11/211 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M +V D ETTGL + DR IEIGAV + D T R F + P G + S Sbjct: 1 MPTSAANTLVVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GI+++ L+D + + + F DF + N +AHNA FD F++AE +I L Sbjct: 59 EDYTGISNQMLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL- 115 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + +L +ARR + ++ N L +L RY + + H AL D+ + +++ M+ Sbjct: 116 -GQFGCSLLVARRLYQAAPNHQLGTLV-RYKQLPTDGTFHRALADAEMTGHLWLAMLADL 173 Query: 179 SQINFGFKTNEDRFFKE-EKKTVPNISLLKR 208 Q FG + ++ KKT + R Sbjct: 174 QQ-EFGLCSPTFELLQKLAKKTKAEVPKFLR 203 >gi|322390849|ref|ZP_08064359.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903] gi|321142519|gb|EFX37987.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903] Length = 1464 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + N+ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 419 LDLNEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVI-EEFDEFIDP-GHPLSAFTTQ 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT+E ++ + EF F + +AHNA FDVGF+NA +R P Sbjct: 477 LTGITNEHVRGAKPLVQVLKEFQAFC--EGTVLVAHNATFDVGFMNANYERHGL-PKITQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 534 PVIDTLEFARNLYPDFKRHGLGPLTKRFGVGLEHH--HMANYDAEATGRLL 582 >gi|315504521|ref|YP_004083408.1| DNA polymerase iii, epsilon subunit [Micromonospora sp. L5] gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5] Length = 584 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 101/255 (39%), Gaps = 25/255 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I EIGAV++ + + P G P L GIT Sbjct: 32 FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQA 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F +F + +A +AHNA +DVGF+ A + +P R++DT + Sbjct: 90 MLLPAPPIEQVLPSFLEFIS--DAVLVAHNAPYDVGFLKAACAKHGYRWPNP-RVLDTAA 146 Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +ARR L +L + + + H AL D+ DV ++ +GG ++ Sbjct: 147 LARRVLTRDEVPNRKLGTLAAYF--RTATQPTHRALDDAKATVDVLHGLIGRLGGHRVGT 204 Query: 184 GFKTNE-----------DRFFKEEKKTVPNISLLKR--DKPLFTRITKEELDEHDKTIQT 230 + E R + VP + + + D+PL+ + + Sbjct: 205 VGEAIEFARAVTPTQRRKRHLADGLPKVPGVYIFRAADDRPLYVGTSGDIATRVRSYFTA 264 Query: 231 LGKNAIWDRYISSNQ 245 K A +++ + Sbjct: 265 AEKRARISEMLAAAE 279 >gi|296877258|ref|ZP_06901298.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912] gi|296431778|gb|EFH17585.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912] Length = 1464 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + N+ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 419 LDLNEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVI-EEFDEFIDP-GHPLSAFTTQ 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT+E ++ + EF F + +AHNA FDVGF+NA +R P Sbjct: 477 LTGITNEHVRGAKPLVQVLKEFQAFC--EGTVLVAHNATFDVGFMNANYERHGL-PKITQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 534 PVIDTLEFARNLYPDFKRHGLGPLTKRFGVGLEHH--HMANYDAEATGRLL 582 >gi|229820392|ref|YP_002881918.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM 12333] gi|229566305|gb|ACQ80156.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM 12333] Length = 590 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 14/215 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG D I EIGAV + + P GR P L GIT+ Sbjct: 32 FVVVDLETTGGSPNADAITEIGAVRVR-GGVVEGELGTLVDP-GRSIPPTITVLTGITNA 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + F +F A +AHNA+FD GF+ +R+ P ++DT+ Sbjct: 90 MVIGAPPIEEVLPSFLEF--AHGAVLVAHNARFDTGFLRVAAERMGLTWPKP-LVVDTVQ 146 Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF-- 183 +ARR + + + L SL + + +++ H AL D+ DV ++ + + Sbjct: 147 LARRVVSRDEAPNHRLGSLARLFHASVT--PDHRALTDARATVDVLHGLLARMAPLGVTH 204 Query: 184 --GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 +T D E ++ V L ++ + Sbjct: 205 LEDLRTAGDSVPPERRRKVTLADGLPAAPGVYQFL 239 >gi|229104149|ref|ZP_04234821.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28] gi|228679166|gb|EEL33371.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28] Length = 315 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|116627026|ref|YP_819645.1| DNA polymerase III PolC [Streptococcus thermophilus LMD-9] gi|122268369|sp|Q03MX3|DPO3_STRTD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116100303|gb|ABJ65449.1| DNA polymerase III catalytic subunit, PolC type [Streptococcus thermophilus LMD-9] gi|312277486|gb|ADQ62143.1| DNA polymerase III polC-type [Streptococcus thermophilus ND03] Length = 1464 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G S + Sbjct: 419 LELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIVEQ-FDEFIDP-GYPLSAFTTE 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD +K + EF +F + A +AHNA FDVGF+NA +R P Sbjct: 477 LTGITDNHVKGAKPLVQVLQEFQEFC--KGAVLVAHNATFDVGFMNANYERHQL-PTISQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 582 >gi|229117071|ref|ZP_04246451.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3] gi|228666360|gb|EEL21822.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3] Length = 315 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPSRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGF-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|228477790|ref|ZP_04062418.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus salivarius SK126] gi|228250482|gb|EEK09696.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus salivarius SK126] Length = 1464 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G S + Sbjct: 419 LELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIIEQ-FDEFIDP-GHPLSAFTTE 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD +K + EF +F Q +AHNA FDVGF+NA +R P Sbjct: 477 LTGITDNHVKGAKPLVQVLQEFQEFC--QGTVLVAHNATFDVGFMNANYERHQL-PTISQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 582 >gi|239616641|ref|YP_002939963.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1] gi|239505472|gb|ACR78959.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1] Length = 185 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 8/169 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66 +V D ETTG + DRIIEI A+ + + F + P R +HG+ Sbjct: 5 YVVIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVDLAFHSLVNPQIR-IPAYISGIHGLK 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + +P+ S +F F ++ NA + H+ + D+ F + + I PL ++ IDT Sbjct: 64 NEDVTSEPTISDVFPRFKEYLG--NAIIVGHSIEVDMKFFDIACKEIGTFPLS-NQYIDT 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L IA+ L L KR I H AL D+ + V++ M+ Sbjct: 121 LKIAKDLFKEGSYSLAELAKRLKIK--DAPTHRALDDARVTGKVFLAMV 167 >gi|126174568|ref|YP_001050717.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155] gi|125997773|gb|ABN61848.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155] Length = 208 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 11/215 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M +V D ETTGL + DR IEIGAV + D T R F + P G + S Sbjct: 1 MPTSAANTLVVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GI+++ L+D + + + F DF + N +AHNA FD F++AE +I L Sbjct: 59 EDYTGISNQMLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL- 115 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + +L +ARR + ++ N L +L RY + + H AL D+ + +++ M+ Sbjct: 116 -GQFGCSLLVARRLYQAAPNHQLGTLV-RYKQLPTDGTFHRALADAEMTGHLWLAMLADL 173 Query: 179 SQINFGFKTNEDRFFKE-EKKTVPNISLLKRDKPL 212 Q FG + ++ KKT + R + Sbjct: 174 QQ-EFGLCSPTFELLQKLAKKTKAEVPKFLRQYAV 207 >gi|171920237|ref|ZP_02690314.2| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902634|gb|EDT48923.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 1442 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 5/173 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++FDIETTGL D IIE GA+ + + + Q F+ P ++ + L Sbjct: 403 NLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKP-IQEINENITNL 461 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPS 121 I+ E + + + + + F+ N +AHN FD+ FIN L + +PL + Sbjct: 462 TNISQEMVNNAIDEKTALLKIKEIFD--NHILVAHNGINFDINFINQRLLKWGLEPL-KN 518 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDTL I+R +P + L ++CK+Y + + H A D+ +L+D + M Sbjct: 519 PSIDTLMISRAINPFKSHRLGAICKKYEVDYNDEVAHRADYDAMVLADAFKIM 571 >gi|24378642|ref|NP_720597.1| DNA polymerase III PolC [Streptococcus mutans UA159] gi|32469722|sp|Q8DWE0|DPO3_STRMU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|24376501|gb|AAN57903.1|AE014864_1 DNA polymerase III, alpha subunit [Streptococcus mutans UA159] Length = 1465 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 15/213 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + N+ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S Sbjct: 418 MDMNEATYVVFDVETTGLSAINNDLIQIAASKMHKGNIVEQ-FDEFIDP-GHPLSQFTTD 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K S + EF F Q+ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDQHVKGAKPISQVLQEFQSFC--QDTVLVAHNATFDVGFMNANYERHDL-PKITQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLLFIFLKEAKE 590 Query: 181 -------INFGFKTNEDRFFKEEKKTVPNISLL 206 ++ K +D +K+ + I +L Sbjct: 591 KHGVNNLLDLNTKIVDDNSYKKARVKHATIYVL 623 >gi|254482913|ref|ZP_05096149.1| exonuclease, DNA polymerase III, epsilon subunit family [marine gamma proteobacterium HTCC2148] gi|214036785|gb|EEB77456.1| exonuclease, DNA polymerase III, epsilon subunit family [marine gamma proteobacterium HTCC2148] Length = 206 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N +V D ETTGL + DR IEIGAV ++ K FQ + P GR+ Sbjct: 3 NADTVVVLDFETTGLSPGEGDRAIEIGAVR-IESGKVTARFQELMNP-GRRVDSFIESFT 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT+ L D S + +F DF E N +AHNA FD F++AEL+RI + Sbjct: 61 GITNLMLADARPCSDVMRDFADFIGEDN--LVAHNASFDKRFLDAELERIALSY--TGQF 116 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ ARR + + L +L + I + H AL DS + + +++ M+ Sbjct: 117 SCSMLAARRIFQQAPDHKLGTLVEFMNIPVEG-VFHRALYDSEMTAKLWLAML 168 >gi|160944143|ref|ZP_02091373.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii M21/2] gi|158444819|gb|EDP21823.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii M21/2] Length = 1417 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 18/222 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGLD + + EIGAV + + + F F+ P G+ +P+ +L GIT+E Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIIRNG-EVVEEFDTFVKP-GKPITPKITELTGITNE 454 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127 + D PS F F ++ + HN FD+ F+ A +R IDTL Sbjct: 455 MVADAPSEKEALEAFLAFAGDR--ILVGHNVHAFDMRFLRAAAKRSGIKLEPT--YIDTL 510 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--------VGG 178 ++A+ +P N ++ K + + H A DS L ++ M+ Sbjct: 511 TMAQTMYPGLHNYKQGTINKH--LELPAYEAHRACEDSAALGRIFCVMLNDLAEKEVTKV 568 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 S+IN G N + K+ + + K L+ +++ Sbjct: 569 SEINTGLGGNREVLKKKYYHLIILVKNQMGLKNLYKIVSEAH 610 >gi|325103921|ref|YP_004273575.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145] gi|324972769|gb|ADY51753.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145] Length = 459 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 18/227 (7%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + + DIETTG + R+ EI AV + D + + + P + L GI Sbjct: 4 RKNYAIVDIETTGAYAGGSRMTEI-AVLIHDGVQVVEEYHTLINPK-QSIPHYIQVLTGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D+ + D P F ++ ++ + Q+ ++AHN FD F++++L+ P + Sbjct: 62 SDDMVSDAPEFENVAAKVFSLL--QDKIFVAHNVGFDYSFVHSQLRECGYYLRSP--KLC 117 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 T+ ++R+ P L LC+ GI I+ R H A D+ + ++ +++ ++ + Sbjct: 118 TVRLSRKCFPGLPSYSLGKLCQSLGIAINDR--HRAYGDARATAVLFGRILSADNEGHIQ 175 Query: 185 FKTNEDRFFKEEKKTVPNI---SLLKRDKPLFTRITKEELDEHDKTI 228 + + VP L +R F R D+H K I Sbjct: 176 LQLKKGYKEHRLPSQVPLSEFEQLPERPGVYFFR------DKHGKLI 216 >gi|95929273|ref|ZP_01312017.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] gi|95134771|gb|EAT16426.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] Length = 217 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 9/171 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + IV D ET+G+ + DR IE+GAV+ ++ + F+ + P G + S + G Sbjct: 7 QQDLIVLDFETSGMAPQRGDRAIEVGAVK-VNDGRIVDHFESLMNP-GFRVSSFIEEFTG 64 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT++ L+ P + +F +F A +AHNA FD F+ +E RI + L R Sbjct: 65 ITNDELRRAPRCEEVMHQFSEFIG--GAPLVAHNASFDQRFLKSEFARIGECKLL--RFG 120 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ +ARR +P + L +L + S H AL D+ + + ++++M Sbjct: 121 CSMLVARRLYPEAPNHKLATLVAYKNLP-SQGVFHRALADAEMTAHLWMEM 170 >gi|301167913|emb|CBW27498.1| putative DNA polymerase III PolC-type [Bacteriovorax marinus SJ] Length = 438 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 8/169 (4%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N + VFD+ETTG + K+D+IIEIG V++ ++ ++ + P K KL Sbjct: 9 NNLEFCVFDLETTGGNHKSDKIIEIGLVKIKNFEVIDQK-NYLIQPEI-KIPEFIQKLTS 66 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I +E +KD P + E F ++ +AHN FDV F N+ L+R+ K L ++ + Sbjct: 67 IKEEDVKDSPVIEDVIDEILKFMG--DSILVAHNTSFDVPFFNSVLKRLGKPQL-KNKSL 123 Query: 125 DTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 T + + P+ N LN + K +GI H+ H AL D+ +++ + Sbjct: 124 CTNLMTKYLIPNLMNSNLNYMSKIFGIK--HKKAHRALDDALATAELLL 170 >gi|317502363|ref|ZP_07960529.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089964|ref|ZP_08338855.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896236|gb|EFV18341.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403102|gb|EGG82665.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium 3_1_46FAA] Length = 245 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 63/214 (29%), Positives = 96/214 (44%), Gaps = 19/214 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTGLD N+ IIEIGA+++ D K + F F+ P SP L GI+++ Sbjct: 5 YIAFDLETTGLDPMNNEIIEIGALKVRDG-KVSERFMEFIKPQ-ELISPAITGLTGISND 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S+ ++F DF E I HN FD F R IDTL Sbjct: 63 MVASARPARSVITDFIDFCEED--ILIGHNIIFDYSFTKCTAAREGLPFEKMG--IDTLK 118 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 IA++ HP L++LC+ Y I +++ H A D+ + +Y + + F+ Sbjct: 119 IAKKVHPELESKSLSALCEHYKIE--NKAAHRAYFDALATAKLYQTL-------SHYFEP 169 Query: 188 NEDRFFKEEK---KTVPNISLLKRDKPLFTRITK 218 + + FK + K + L R+TK Sbjct: 170 DNPKTFKPSQLTYKIRKPQPATPKQLALLERLTK 203 >gi|304408937|ref|ZP_07390558.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|307302940|ref|ZP_07582695.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] gi|304352758|gb|EFM17155.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|306913300|gb|EFN43722.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] Length = 208 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 63/211 (29%), Positives = 99/211 (46%), Gaps = 11/211 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M +V D ETTGL + DR IEIGAV + D T R F + P G + S Sbjct: 1 MPTSAANTLVVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQR-FSELMNP-GFRISRFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GI+++ L+D + + + F DF + N +AHNA FD F++AE +I L Sbjct: 59 EDYTGISNQMLRDAAPCNEVMARFADFIADHN--LVAHNAAFDQRFLDAEFAQIRHRYL- 115 Query: 120 PSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + +L +ARR + ++ N L +L RY + + H AL D+ + +++ M+ Sbjct: 116 -GQFGCSLLVARRLYQAAPNHQLGTLV-RYKKLPTDGTFHRALADAEMTGYLWLAMLADL 173 Query: 179 SQINFGFKTNEDRFFKE-EKKTVPNISLLKR 208 Q FG ++ KKT ++ R Sbjct: 174 QQ-EFGVNAPTFELLQKIAKKTKADVPKFLR 203 >gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma australiense] gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma australiense] Length = 1530 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG S D+IIEI V++ K + FQ + P K S + + ITD+ Sbjct: 450 YVVFDLETTGFSSTKDKIIEIAGVKIKHGKKI-QEFQALINPQ-EKLSQTIINITNITDD 507 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ K + + +F +F +N +AHNA FD+ F+ +++ + P +IDT++ Sbjct: 508 MLEGKNTIDQVLPDFLNFI--ENCILVAHNATFDITFLKEKIKELGI-AYKPQPVIDTMT 564 Query: 129 IARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +++R L L + + + H AL D++ + V+IKM+ Sbjct: 565 LSQRFFSEFLKYFSLKRLATVFKVKME--EHHRALSDANTTAQVFIKMI 611 >gi|55820164|ref|YP_138606.1| DNA polymerase III PolC [Streptococcus thermophilus LMG 18311] gi|81561132|sp|Q5M6H0|DPO3_STRT2 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|55736149|gb|AAV59791.1| DNA polymerase III alpha subunit [Streptococcus thermophilus LMG 18311] Length = 1464 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G S + Sbjct: 419 LELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIVEQ-FDEFIDP-GYPLSAFTTE 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD +K + EF +F + A +AHNA FDVGF+NA +R P Sbjct: 477 LTGITDNHVKGAKPLVQVLQEFQEFC--KGAVLVAHNATFDVGFMNANYERHQL-PTISQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 582 >gi|55822053|ref|YP_140494.1| DNA polymerase III PolC [Streptococcus thermophilus CNRZ1066] gi|81559957|sp|Q5M1Y0|DPO3_STRT1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|55738038|gb|AAV61679.1| DNA polymerase III alpha subunit [Streptococcus thermophilus CNRZ1066] Length = 1464 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G S + Sbjct: 419 LELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIVEQ-FDEFIDP-GYPLSAFTTE 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD +K + EF +F + A +AHNA FDVGF+NA +R P Sbjct: 477 LTGITDNHVKGAKPLVQVLQEFQEFC--KGAVLVAHNATFDVGFMNANYERHQL-PTISQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 582 >gi|323489712|ref|ZP_08094939.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2] gi|323396843|gb|EGA89662.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2] Length = 920 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 9/183 (4%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 N + +V DIETTG K DRII++ V + + T+ T+ F+ P GR L Sbjct: 1 MNTQKYVVVDIETTGHSPAKGDRIIQLAMVTIENGEITD-TYTEFINP-GRTIPLFIQDL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 ITD + + +F ++ Q+A ++AHN FD+ F+ AEL+R P Sbjct: 59 TNITDADVAEAKAFEHYAQTVYE--KMQDAIFVAHNTNFDLPFLQAELKRSGL-PKWQGL 115 Query: 123 IIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +DT+ + R +P++ L + GI + S H A D+ + ++++ + + Sbjct: 116 TMDTVELVRLMYPTAFSFKLQDITSELGIPLE--SAHRADDDAMATALLFLRAKEDLASL 173 Query: 182 NFG 184 + Sbjct: 174 PYA 176 >gi|312862610|ref|ZP_07722851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus vestibularis F0396] gi|311101870|gb|EFQ60072.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus vestibularis F0396] Length = 1464 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G S + Sbjct: 419 LELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIVEQ-FDEFIDP-GHPLSAFTTE 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD +K + EF +F Q +AHNA FDVGF+NA +R P Sbjct: 477 LTGITDNHVKGAKPLVQVLQEFQEFC--QGTVLVAHNATFDVGFMNANYERHQL-PTISQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 582 >gi|194333813|ref|YP_002015673.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM 271] gi|194311631|gb|ACF46026.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM 271] Length = 208 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV + + +R FQ + P G + S GIT+E Sbjct: 11 VVLDFETTGLSPQYGDRAIEIGAVLVEEGRIVDR-FQKLMNP-GFRISSFIEAYTGITNE 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK + + ++F +F N +AHNA FD F++ EL+R N+ +L Sbjct: 69 MLKGEACCEEVMAQFSEFIAGHN--IVAHNASFDKRFLDFELKRANRSYEGVC--CCSLL 124 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++RR + S + L +L G+ + S H AL D+ + + +++ M+ Sbjct: 125 VSRRIYQDSPNHKLQTLVSHAGVP-TIGSFHRALADAEMTAHLWLAMI 171 >gi|300773503|ref|ZP_07083372.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300759674|gb|EFK56501.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 469 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 9/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + DIETTG + N I EI A+ L D + ++Q + P+ ++ Sbjct: 5 MSVSESRIYAIVDIETTGGYAANSGITEI-AIYLHDGHQIIDSYQTLINPH-KEIPYHIQ 62 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GIT E L D PSF + ++ + F +N ++AHN FD F+ A L+ P Sbjct: 63 MLTGITPEMLTDAPSFEDVAADIYSFL--ENKVFVAHNVNFDYSFVYAHLKACGYQWKSP 120 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + T+ +AR S L +LC+R I IS R H A D+ ++ +++ Sbjct: 121 --KLCTVRLARNIFKGFSSYSLGNLCQRLDIPISDR--HRAAGDAKATVILFERIL 172 >gi|256384095|gb|ACU78665.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma mycoides subsp. capri str. GM12] gi|256384927|gb|ACU79496.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma mycoides subsp. capri str. GM12] gi|296455696|gb|ADH21931.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 1482 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 5/169 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FD+ETTGL + D IIE GA+E + + + + P K KL IT+ Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPK-AKLKAFTQKLTNITE 492 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+DKPS F + + ++A +AHNA FD F++ +++ L+ + IIDTL Sbjct: 493 KMLEDKPSIEQAFKQINEII--KDAILVAHNANFDFTFLSYWSEKLGYGKLE-NTIIDTL 549 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +I+R +P + + L SL KR I+ H D+ +L+D+Y +M+ Sbjct: 550 TISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 598 >gi|148996698|ref|ZP_01824416.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70] gi|147757273|gb|EDK64312.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70] Length = 910 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R + P Sbjct: 476 LTGITDDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHDL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|121998681|ref|YP_001003468.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1] gi|121590086|gb|ABM62666.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1] Length = 707 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 12/195 (6%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63 ++ ++FD ETTGL + D II I V +++ F+ + P GR ++K H Sbjct: 511 QLSFVIFDTETTGLAPSEGDEIISIAGVRMVNGRILEGECFEQLVNP-GRPIPKASIKFH 569 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI DE + DKP +++ +F F ++ +AHNA FD+ FI + + +P + Sbjct: 570 GIRDEMVADKPGIATVLPQFSAFVG--DSVLVAHNAAFDMKFIRLKEGQCGLKFENP--V 625 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +DTL ++ H + L ++ R G+ IS R H AL D+ + +++ +M+ + Sbjct: 626 LDTLLLSVFLHDHTPEHTLEAIANRLGVEISGR--HTALGDTLVTGEIFAQMLPLLEER- 682 Query: 183 FGFKTNEDRFFKEEK 197 G T D E+ Sbjct: 683 -GVTTLRDAINASEQ 696 >gi|312869005|ref|ZP_07729182.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus oris PB013-T2-3] gi|311095431|gb|EFQ53698.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus oris PB013-T2-3] Length = 1444 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL + D++IE+ AV++ + R F F+ P G S + L ITDE Sbjct: 423 YVIFDVETTGLSAIYDKVIELSAVKMKNGEVLAR-FDEFIDP-GFPLSEQTTNLTSITDE 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + +F F DF Q HN FD+GF+N +R + + +IDTL Sbjct: 481 MVRGSKTEEEVFKMFKDFC--QGTIIAGHNVSFDMGFMNTGYRRHQMEEI-TEPVIDTLP 537 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR +P+ R LN+L K++ + + H H A D+ + K + Sbjct: 538 LARFLYPNMRGYRLNTLSKKFKVALEHH--HRANYDAEATGHLLYKFL 583 >gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550] gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550] Length = 318 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHAN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKQAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170 >gi|42560899|ref|NP_975350.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492396|emb|CAE76992.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320644|gb|ADK69287.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 1482 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 5/174 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + R + FD+ETTGL + D IIE GA+E + + + + P K KL Sbjct: 429 KLKDARMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKT-KLKAFTQKL 487 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 IT++ L+DKPS F + + ++A +AHNA FD F++ +++ L+ + Sbjct: 488 TNITEKMLEDKPSIEQAFKQINEII--KDAILVAHNANFDFTFLSYWSEKLGYSKLE-NT 544 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IIDTL+I+R +P + + L SL KR I+ H D+ +L+D+Y +M+ Sbjct: 545 IIDTLTISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 598 >gi|225573157|ref|ZP_03781912.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM 10507] gi|225039486|gb|EEG49732.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM 10507] Length = 234 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 62/211 (29%), Positives = 93/211 (44%), Gaps = 16/211 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGLD + + IIEIGA+++ + K F F+ P + S L GIT+E Sbjct: 5 YVAFDVETTGLDPEQNEIIEIGALKVRNG-KVVERFMKFIRPT-EEISQTITDLTGITNE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + S + EF DF E I HN FD F+ + D + S+ IDTL Sbjct: 63 MVVNAQSREQVIPEFLDFCRED--ILIGHNVAFDYSFMKMGALAVGLDFV--SQGIDTLK 118 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 IAR+ H L LC Y I +++ H A D+ + +Y + F+ Sbjct: 119 IARKVHGDLESKSLERLCAYYQIE--NKAAHRAYHDALATAKLYQTL-------AHYFEE 169 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 E F+ + +L K +TK Sbjct: 170 KEPAVFQPMELYYKQKKILPASKRQVEFLTK 200 >gi|114319829|ref|YP_741512.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226223|gb|ABI56022.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] Length = 719 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 9/175 (5%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61 +++ +VFD ETTGL + D II IGAV L++ + F+ + P R A + Sbjct: 519 LDQLSCVVFDTETTGLSPARGDEIIAIGAVRLVNGRVLQDEYFEQLVKP-CRAIPDSATR 577 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HGI++E + P + F F E+ + +AHNA FD+GF+ R P Sbjct: 578 FHGISNEDVARAPEIGPVLRAFSRFIGEE-SVLVAHNAAFDMGFLRRAQARAGLAF--PQ 634 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++ H S + L + +R G+ + R H AL D+ + +DV+ +M+ Sbjct: 635 PVLDTLLLSVYLHDHSPDHTLEGVAERLGVEVQKR--HSALADARVTADVFARMI 687 >gi|331265607|ref|YP_004325237.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5] gi|326682279|emb|CBY99896.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5] Length = 1463 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S + Sbjct: 418 MDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAE-FDEFINP-GHPLSAFTTE 475 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT + +K+ + EF +F ++ +AHNA FDVGF+NA +R P Sbjct: 476 LTGITYDHVKNAKPLEQVLQEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKISQ 532 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 533 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 581 >gi|209964314|ref|YP_002297229.1| exonuclease, putative [Rhodospirillum centenum SW] gi|209957780|gb|ACI98416.1| exonuclease, putative [Rhodospirillum centenum SW] Length = 699 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 10/175 (5%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61 + +VFD ETTGL+ + D ++ + V +++ T TFQ + P GR + Sbjct: 501 LRSLSYVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINP-GRAIPAASAA 559 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGITD + + P ++ F F +A +AHNA FD+ F+ + + Sbjct: 560 IHGITDAMVAEAPRAEAVLPPFRAFVG--DAVLVAHNAAFDLKFLRLKQRAAGVRF--DG 615 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++R+ + L+ L R GI + R H A+ DS + + +++++M Sbjct: 616 PVLDTMILSRQIQGDHGEHSLDGLAARLGIGLVDR--HSAMGDSLMTAAIFLRLM 668 >gi|319745868|gb|EFV98158.1| DNA polymerase III PolC [Streptococcus agalactiae ATCC 13813] Length = 1468 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 423 MNLHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSAFTTE 480 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD ++ + EF +F Q +AHNA FDVGF+NA +R N PL Sbjct: 481 LTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQ 537 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ + + H H A D+ + Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALEHH--HMANYDAEATGRLL 586 >gi|194017045|ref|ZP_03055658.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus pumilus ATCC 7061] gi|194011651|gb|EDW21220.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus pumilus ATCC 7061] Length = 930 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 9/172 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 R +V DIETTG K D+II+I AV + + R + ++ P G+ +L G Sbjct: 3 DQRFVVVDIETTGNSPKKGDKIIQIAAVVIENGQIVER-YSKYVNP-GKAIPGFIEQLTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + D F I E +D Q A ++AHN FD+ F+N EL+ K+ LD I Sbjct: 61 IQQHMVDDAVFFEDIAQEVYDLI--QGAYFVAHNVHFDLNFLNDELKACGKNELDV-LAI 117 Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+ I+R +P L L + + + H H A D+ + + +++ ++ Sbjct: 118 DTVEISRILYPELEGYKLTELSEE--LMLPHDHPHRADSDAEVTAMLFLTLL 167 >gi|322517665|ref|ZP_08070529.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124] gi|322123697|gb|EFX95287.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124] Length = 1424 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G S + Sbjct: 379 LELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIVEQ-FDEFIDP-GHPLSAFTTE 436 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD +K + EF +F Q +AHNA FDVGF+NA +R P Sbjct: 437 LTGITDNHVKGAKPLVQVLQEFQEFC--QGTVLVAHNATFDVGFMNANYERHQL-PTILQ 493 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 494 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 542 >gi|152967191|ref|YP_001362975.1| hypothetical protein Krad_3247 [Kineococcus radiotolerans SRS30216] gi|151361708|gb|ABS04711.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans SRS30216] Length = 601 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 11/204 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + I EIGAV++ FQ + P+ L GIT+ Sbjct: 28 FVVVDLETTGGAPADAGITEIGAVKVRGGQVLGE-FQTLVRPSS-PIPAFVQVLTGITNG 85 Query: 69 FLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + PS + + F +F E+ +AHNA +D F+ A Q + P R++DT+ Sbjct: 86 MVATAPSLAQVLPAFLEFAGFERGTVLVAHNAPYDTSFLKAACQVTGR-PWPKPRVVDTV 144 Query: 128 SIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 +AR+ L +L + +G + H AL D+ DV ++ G N G Sbjct: 145 VLARQLVDRDEAPDRKLGTLARLFGTATT--PDHRALHDARATVDVLHALL--GRVGNRG 200 Query: 185 FKTNEDRFFKEEKKTVPNISLLKR 208 + ED P K Sbjct: 201 VHSLEDLSAFAATAVNPVRRAKKH 224 >gi|190576387|ref|YP_001974232.1| putative exonuclease [Stenotrophomonas maltophilia K279a] gi|190014309|emb|CAQ47956.1| putative exonuclease [Stenotrophomonas maltophilia K279a] Length = 169 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 69/166 (41%), Positives = 94/166 (56%), Gaps = 7/166 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D ETTG+ + R+IEIGAVEL+D T R F +L P RK A ++HGI+ Sbjct: 3 RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDWGAQRVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRII 124 D L KP FSS +E +F + +E +AHNA FDVGF++ EL+ RI Sbjct: 62 DAMLVGKPLFSSKAAELLEFL--RGSEMVAHNATFDVGFLDNELRLSGIPGTLAQHCRIT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +L +AR + P N L+ + +R I S R HGAL D+HLL+ V Sbjct: 120 CSLKLARGRWPGQGNKLDDVLQRLRIP-SQRGLHGALKDAHLLAQV 164 >gi|42525158|ref|NP_970538.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] gi|39577369|emb|CAE81192.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] Length = 217 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 60/183 (32%), Positives = 89/183 (48%), Gaps = 12/183 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR I FD+ETTG D+I+EIGAV +D F + P R P A ++GI+ Sbjct: 13 MRFIAFDLETTGTVPGVDQIVEIGAVRFIDGQP-EAIFATLIDP-LRPIPPGASAVNGIS 70 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +K KP +I F +F E +AHNA FD F+ A++++ I+D+ Sbjct: 71 DDMVKGKPLIDTILPAFAEFCGED--VLVAHNAPFDSQFLIADIKKHE-TTAPRGVILDS 127 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----VGGSQI 181 L IAR+ P L +L + I S+ H A D+ L ++ +MM +GG Sbjct: 128 LPIARKVFPGLPNYKLGTLVQHLKIPTSN--FHRAEEDATYLGHMFSQMMKRISIGGQAP 185 Query: 182 NFG 184 G Sbjct: 186 QVG 188 >gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200] gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200] Length = 318 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKHAPNHKLETLKRILGIRLS---SHNAFDDCITCAAVYQK 170 >gi|22538049|ref|NP_688900.1| DNA polymerase III PolC [Streptococcus agalactiae 2603V/R] gi|25011937|ref|NP_736332.1| DNA polymerase III PolC [Streptococcus agalactiae NEM316] gi|76798733|ref|ZP_00780952.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 18RS21] gi|54036993|sp|P63984|DPO3_STRA5 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|54040954|sp|P63983|DPO3_STRA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|22534952|gb|AAN00773.1|AE014277_21 DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 2603V/R] gi|24413479|emb|CAD47557.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae NEM316] gi|76585912|gb|EAO62451.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 18RS21] Length = 1468 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 423 MNLHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSAFTTE 480 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD ++ + EF +F Q +AHNA FDVGF+NA +R N PL Sbjct: 481 LTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQ 537 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ + + H H A D+ + Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALEHH--HMANYDAEATGRLL 586 >gi|146299725|ref|YP_001194316.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] gi|146154143|gb|ABQ04997.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] Length = 459 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG ++ RI EI + D ++ + P + P L GI +E Sbjct: 6 YAIVDIETTGGNASGSRITEIAIIIH-DGKNVLDRYETLVNPE-QDIPPSIFGLTGINNE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P F I + + ++ ++AHN FD F++ +L++ ++ + T+ Sbjct: 64 MVANAPIFDDISEKVLEMLTDR--IFVAHNVNFDYSFVHHQLEQAGFKW--SAKKLCTVR 119 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 AR+ P L +LC I++ +R H A D+ + ++ ++ Sbjct: 120 AARKIKPGLGSYSLGNLCNSLNISLENR--HRAGGDADATAILFSLLLE 166 >gi|77412300|ref|ZP_00788615.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] gi|77161647|gb|EAO72643.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] Length = 1468 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 423 MNLHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSAFTTE 480 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD ++ + EF +F Q +AHNA FDVGF+NA +R N PL Sbjct: 481 LTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQ 537 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ + + H H A D+ + Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALEHH--HMANYDAEATGRLL 586 >gi|331703357|ref|YP_004400044.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801912|emb|CBW54065.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 1482 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 5/169 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FD+ETTGL + D IIE GA+E + + + + P K KL IT+ Sbjct: 434 RMVFFDLETTGLSPELDEIIEFGAIEYNLKTGERKKIDILIKPKT-KLKAFTQKLTNITE 492 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+DKPS F + + ++A +AHNA FD F++ +++ L+ + IIDTL Sbjct: 493 KMLEDKPSIEQAFKQINEII--KDAILVAHNANFDFTFLSYWSEKLGYGKLE-NTIIDTL 549 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +I+R +P + + L SL KR I+ H D+ +L+D+Y +M+ Sbjct: 550 TISRIIYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 598 >gi|77414701|ref|ZP_00790833.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 515] gi|77159245|gb|EAO70424.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 515] Length = 1036 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 423 MNLHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSAFTTE 480 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD ++ + EF +F Q +AHNA FDVGF+NA +R N PL Sbjct: 481 LTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQ 537 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ + + H H A D+ + Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALEHH--HMANYDAEATGRLL 586 >gi|302869008|ref|YP_003837645.1| DNA polymerase III subunit epsilon [Micromonospora aurantiaca ATCC 27029] gi|302571867|gb|ADL48069.1| DNA polymerase III, epsilon subunit [Micromonospora aurantiaca ATCC 27029] Length = 584 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 101/255 (39%), Gaps = 25/255 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I EIGAV++ + + P G P L GIT Sbjct: 32 FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITQA 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F +F + +A +AHNA +DVGF+ A + +P R++DT + Sbjct: 90 MLLPAPPIEQVLPSFLEFVS--DAVLVAHNAPYDVGFLKAACAKHGYRWPNP-RVLDTAA 146 Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +ARR L +L + + + H AL D+ DV ++ +GG ++ Sbjct: 147 LARRVLTRDEVPNRKLGTLAAYF--RTATQPTHRALDDAKATVDVLHGLIGRLGGHRVGT 204 Query: 184 GFKTNE-----------DRFFKEEKKTVPNISLLKR--DKPLFTRITKEELDEHDKTIQT 230 + E R + VP + + + D+PL+ + + Sbjct: 205 VGEAIEFARAVTPTQRRKRHLADGLPKVPGVYIFRAADDRPLYVGTSGDIATRVRSYFTA 264 Query: 231 LGKNAIWDRYISSNQ 245 K A +++ + Sbjct: 265 AEKRARISEMLAAAE 279 >gi|170016990|ref|YP_001727909.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20] gi|169803847|gb|ACA82465.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc citreum KM20] Length = 1437 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + D+IIE+ AV++ + ++ F ++ P G S +L ITD Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVKMQMGNVIDK-FSEYINP-GFPLSDFTTELTSITDA 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + SI S F + ++A + HN FD+GF+NA R N+ P + IIDTL Sbjct: 477 MVANADTEESIVSRFRAWV--RDAILVGHNVTFDIGFMNAAYSRYNQ-PDISNPIIDTLP 533 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +P + L ++ KR+ I + H A+ DS + +++ Sbjct: 534 FTRWLYPDYKSYRLGTIAKRFNINLE--QAHRAIFDSETTGHIAWRLI 579 >gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium prausnitzii L2-6] Length = 1417 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 18/222 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGLD + + EIGAV + + + F F+ P G+ + + +L GIT+E Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIVRNG-EVVEEFDTFVKP-GKPITSKITELTGITNE 454 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127 + D PS + F DF + + + HNA FD+ F+ A +R + IDTL Sbjct: 455 MVADAPSEAEALKAFLDFVDGR--ILVGHNAHSFDIRFLRAAAKRSGIEFEPT--YIDTL 510 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ------ 180 ++A+ +P N ++ K + + H A DS L ++ M+ + Sbjct: 511 TMAQAMYPGLHNYKQGTINKH--LELPAYEAHRACEDSAALGRIFCVMLKDLEEKQVTAV 568 Query: 181 --INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 IN G N + K+ + + K L+ +++ Sbjct: 569 SGINTGLGGNREVLKKKYYHLIILVRSQMGLKNLYKIVSEAH 610 >gi|210620723|ref|ZP_03292209.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275] gi|210155224|gb|EEA86230.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275] Length = 179 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D+ETTGL+ I + + K R++ F+ P ++ P +L GI++E Sbjct: 13 FIVVDLETTGLNPFEGNEIIEIGITEIRNGKIVRSYSRFVKPE-QEIPPFITELTGISNE 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++ + + F F IAHNAKFD+ F+N L ++ + + I TL Sbjct: 72 MVANEDTIEQVLPRFRKFIGSN--TIIAHNAKFDIKFLNYYLNKLGLEEIKD--YICTLE 127 Query: 129 IARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++ + L + C+ YGI +++ H A D+ +++++K+ Sbjct: 128 LLKKVSSYGGKNKKLATACEYYGIE--NKNAHRASSDTQATAELFLKI 173 >gi|288574409|ref|ZP_06392766.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570150|gb|EFC91707.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 193 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 7/170 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL ++ DRI+EIGA+ S+T +FQ F+ P GR EA+ +HGITDE Sbjct: 10 FVAIDVETTGLSNRWDRIVEIGAIRFTPGSET-ESFQTFVSP-GRPIPSEAVAIHGITDE 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P S F ++ + HN FD+GF++A ++ I + + DT Sbjct: 68 MVEGAPGLSEASIALASFLKDEE-PMVFHNPSFDLGFLDANMRAIKGSW-NVMPVFDTCG 125 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +AR+ P + L +L + +G +S H AL D + ++ ++ Sbjct: 126 LARKAFPGIKGYSLVALARHFG--LSGGGHHRALEDCRYSASLFNLILEA 173 >gi|291279025|ref|YP_003495860.1| hypothetical protein DEFDS_0623 [Deferribacter desulfuricans SSM1] gi|290753727|dbj|BAI80104.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 247 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 12/193 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + V D ETTGLD + ++I I AV+++++ K + VF+ P E++K HGITD Sbjct: 62 KFCVIDTETTGLDFETAKLINIAAVKVVNF-KILDIYDVFINPEI-PIPEESIKWHGITD 119 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +KDKP+ + I +F F +++ + H+ FD+ IN +L+ + + IDT+ Sbjct: 120 DMVKDKPTVAEILPDFLKFI--RDSVIVGHHVNFDLKMINKDLKLYYGSEI-KNIWIDTM 176 Query: 128 SIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + + L+ L +++ + R H AL D+ ++V+ K++V GF Sbjct: 177 FLYSKNILCRDDHISLDFLLEKFNVKCIGR--HTALGDALATAEVFNKIVVKMKN---GF 231 Query: 186 KTNEDRFFKEEKK 198 KT D + + K+ Sbjct: 232 KTVSDLYRSQFKE 244 >gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom phytoplasma] Length = 1492 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 7/173 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-NGRKNSPEALKLHGITD 67 +V DIETTG DRII I AV++ + F + P K S +L I+D Sbjct: 405 YVVLDIETTGFSKTRDRIISIAAVKIQNGKII-EYFDELINPGKDIKISNLIQRLTNISD 463 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L +KP I S+F DF + N +AHNA FD+ F+ + I +IDT Sbjct: 464 EILLNKPHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYW-PLLPVIDT 522 Query: 127 LSIARRKH--PSSRNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKMMV 176 L++A++ L + K + I + H AL D+ + ++++M+ Sbjct: 523 LTLAQKYFNKILKYFSLEKIVKSFKIKLDSEGQYHNALFDARATALIFLEMLE 575 >gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222] gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222] Length = 318 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170 >gi|218295641|ref|ZP_03496437.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23] gi|218243800|gb|EED10327.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23] Length = 627 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 14/177 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 FD+ETTGLD + D II +GAV LL + ++ + P GR + ++HG+T Sbjct: 443 YTAFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDP-GRPIPKASTEVHGLTW 501 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E LKDKP + F F + + +AHN FD+ F+ K +D ++DTL Sbjct: 502 EMLKDKPKLEEVLPAFRAFL--EGSVLVAHNGAFDMAFLR-------KVGIDQPPLVDTL 552 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +A P + + L L +R+G+ + R H AL D+ + ++VY +M+ + F Sbjct: 553 LLAHLLFPDLKDHRLERLAERFGVPVLGR--HTALGDALMTAEVYARMIPLLKERGF 607 >gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] Length = 303 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 9/169 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GI Sbjct: 10 PLNYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGI 67 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+ + D P+ + F F ++ +AHNA FD+ F+ + + + P +++ID Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHKN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVID 124 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T+ +A++ + L +L + GI +S H A D + VY K Sbjct: 125 TVFLAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170 >gi|319779076|ref|YP_004129989.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] gi|317109100|gb|ADU91846.1| DNA polymerase III epsilon subunit [Taylorella equigenitalis MCE9] Length = 186 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 65/190 (34%), Positives = 105/190 (55%), Gaps = 17/190 (8%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR + D ETTG RIIE+G VE++ K+ R ++ P+ R++ A ++H I Sbjct: 1 MRYVCLDTETTGSKYYLGHRIIELGCVEVICGQKSGRELHMYFNPD-RRSDFGAFRVHKI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RI 123 +DEFL DKP F+ E DF + + HNA FD+GF+N E + + L+ + Sbjct: 60 SDEFLLDKPRFADCVDEIIDFL--YGSTLVIHNAPFDMGFLNYEFKISGQPKLNEFVVDV 117 Query: 124 IDTLSIAR-----RKHPSSRNDLNSLCKR-----YGITISHRSKHGALLDSHLLSDVYIK 173 IDT+ + R + HP+ R L++L K Y + HR+ HGAL+D+ +L+D++I+ Sbjct: 118 IDTVILGRMKLPKKLHPNQRYSLDALYKTLVRSDYNPAL-HRNPHGALIDARMLADLFIR 176 Query: 174 MMVGGSQINF 183 + +G +I Sbjct: 177 LNMGQEEIPI 186 >gi|256847046|ref|ZP_05552492.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus coleohominis 101-4-CHN] gi|256715710|gb|EEU30685.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus coleohominis 101-4-CHN] Length = 1448 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL + D++IE+ A ++ D +R F F+ P G S + +L ITD+ Sbjct: 428 YVIFDVETTGLSAIYDKVIELSATKMKDGKVLDR-FDEFIDP-GFPLSEQTTELTSITDD 485 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S +F F DF + HN FD+GF+N QR + P +IDTL Sbjct: 486 MVQGSKSEEEVFKMFQDFCA--GSIIAGHNVSFDMGFMNTGYQRHHL-PEITQPVIDTLP 542 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR +P R LN+L K++ +++ H H A D+ + + Sbjct: 543 LARFLYPDLRGYRLNTLSKKFKVSLEHH--HRANYDAEATGHLLHIFL 588 >gi|291548851|emb|CBL25113.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruminococcus torques L2-14] Length = 231 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTGL + IIEIGA+++ + +R F F+ P+ + +P + IT++ Sbjct: 5 YIAFDLETTGLSPQEHEIIEIGALKVREGKVVDR-FMEFVHPD-KPITPMITNITHITND 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + S + +F F ++ I HN FD F+ R IDTL Sbjct: 63 MVAGARSCPEVIHDFLSFC--EDDVLIGHNVMFDYSFVKCSAVREGLTFEKMG--IDTLK 118 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IAR+ H L +LC Y I + H A D+ + +Y + Sbjct: 119 IARKVHKDFESKSLGALCDYYHIENP--AAHRAYYDALATAKLYQTL 163 >gi|78044072|ref|YP_360592.1| DNA polymerase III subunit alpha [Carboxydothermus hydrogenoformans Z-2901] gi|77996187|gb|ABB15086.1| DNA polymerase III, alpha subunit, Gram-positive type [Carboxydothermus hydrogenoformans Z-2901] Length = 1407 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 97/176 (55%), Gaps = 10/176 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + + FD ET+GL S+ D IIEIGAV++ D + TF V + P + S + + Sbjct: 387 LSLKETPIVAFDFETSGLSSQRDEIIEIGAVKIFDG-EIKETFSVLIRPQ-KPISAKISE 444 Query: 62 LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GIT++ L K+ F +F F + + +AHNA FD GF+ L+R+ + Sbjct: 445 LTGITNDLLEKEGLDFGEAIEKFLRFCD--GSILLAHNAAFDYGFLRQALKRLGHE--RK 500 Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++D L++ R P + + L ++ + +++++ H AL DS+ L++V++K++ Sbjct: 501 FSVVDNLALVRILFPELKNHKLKTITEHLEVSLNNH--HRALADSYALAEVFLKLL 554 >gi|313674131|ref|YP_004052127.1| DNA polymerase iii, epsilon subunit [Marivirga tractuosa DSM 4126] gi|312940829|gb|ADR20019.1| DNA polymerase III, epsilon subunit [Marivirga tractuosa DSM 4126] Length = 465 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + +RI EI + D K + +Q + P R P+ +HGI D+ Sbjct: 2 YAIVDIETTGGYAARNRICEIAIILH-DGEKVVKEYQTLINPE-RHIPPQLSAIHGINDQ 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F + + ++AH+ FD F+ A Q + + + + T+ Sbjct: 60 MVEDAPKFYEEAKTIHELL--EGNIFVAHSVNFDYSFVKAAFQDLGYELKL--KKLCTVR 115 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R+ P + L ++C+ GI I+ R H A D+ ++++ +++ Sbjct: 116 LSRKIFPGLKSYSLGNICENRGIKINDR--HRAFGDAIATAELFTQLV 161 >gi|194367724|ref|YP_002030334.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia R551-3] gi|194350528|gb|ACF53651.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia R551-3] Length = 169 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 69/166 (41%), Positives = 94/166 (56%), Gaps = 7/166 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D ETTG+ + R+IEIGAVEL+D T R F +L P RK A ++HGI+ Sbjct: 3 RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDWGAQRVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRII 124 D L KP FSS +E DF + +E +AHNA FDVGF++ EL+ RI Sbjct: 62 DAMLVGKPLFSSKAAELLDFL--RGSEMVAHNATFDVGFLDNELRLAGIPGTLAQHCRIT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +L +AR + P N L+ + +R I +R HGAL D+HLL+ V Sbjct: 120 CSLKLARGRWPGQGNKLDDVLQRLRIP-GNRGLHGALKDAHLLAQV 164 >gi|260061966|ref|YP_003195046.1| DNA polymerase III subunit epsilon [Robiginitalea biformata HTCC2501] gi|88783528|gb|EAR14699.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata HTCC2501] Length = 456 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 11/186 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG +RI EI A+ +D + ++ + P G + L GIT Sbjct: 2 YTVVDIETTGNGIYGNRITEI-ALFNIDQGRIADSYSTLVNP-GCEIPAFITGLTGITTA 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P FS I + F ++AH+ FD + E +R D + + T+ Sbjct: 60 MVRNAPDFSEIAPKIDAF--SSGRVFVAHSVNFDYPIVRKEFERCGLDF--GRKKLCTVR 115 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV--GGSQINFGF 185 ++RR P R L LC+ I +S R H A D+ + + ++ M GG GF Sbjct: 116 LSRRVFPGLRSYSLGKLCRSLEIPLSDR--HRAAGDARATALLLLRAMEQPGGQDTIAGF 173 Query: 186 KTNEDR 191 R Sbjct: 174 LNARSR 179 >gi|110678446|ref|YP_681453.1| exonuclease, putative [Roseobacter denitrificans OCh 114] gi|109454562|gb|ABG30767.1| exonuclease, putative [Roseobacter denitrificans OCh 114] Length = 465 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 86/176 (48%), Gaps = 7/176 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60 R + +VFD ETTGLD D ++++GAV +++ F + P GR P + Sbjct: 266 TRLRDLTFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNP-GRTIPPGST 324 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +H I+D + D P F F F ++A +AHNA FD+ F+ + + ++D Sbjct: 325 AVHQISDAMVADAPGFDVACRAFHQF--AEHAVIVAHNAPFDMAFLRRQCR--DQDYAFD 380 Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + I+DT+ ++ S + L++LC R + I +H L D+ + + ++ Sbjct: 381 NPILDTVHLSAVVFGGSAEHTLDALCDRLNVHIPDDVRHTGLGDALATAKALVALI 436 >gi|296110428|ref|YP_003620809.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc kimchii IMSNU 11154] gi|295831959|gb|ADG39840.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc kimchii IMSNU 11154] Length = 1437 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + D+IIE+ AV+ + F ++ P G S KL ITD Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVK-MQLGNVIEKFSEYINP-GFPLSDFTTKLTSITDT 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +I + F + +A I HN FD+GF+NA R N+ + + +IDTL Sbjct: 477 MVAHADTEENIITRFRKWIG--DAVLIGHNVTFDIGFMNAAYARYNQTVI-KNPVIDTLP 533 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +P + L +L KR+ I + H A+ D+ + +++ Sbjct: 534 FTRWLYPDYKSYRLGTLAKRFNINLE--QAHRAIFDAETTGHIAWRLI 579 >gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pakistani str. T13001] Length = 318 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170 >gi|41408028|ref|NP_960864.1| hypothetical protein MAP1930 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396383|gb|AAS04247.1| hypothetical protein MAP_1930 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 643 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 26/228 (11%) Query: 4 KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +V D+ETTG S + D I EIGAV++ F + P R P Sbjct: 35 LRDTTFVVVDLETTGGRSTSTEETAPDAITEIGAVKVRGGVVLGE-FATLVDPQ-RSIPP 92 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRINKD 116 + ++L GIT + D P+ ++ F +F ++ A +AHNA FDVGF+ A Q+ + Sbjct: 93 QIMRLTGITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIA 152 Query: 117 PLDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P R++ T+ +ARR + + L SL + + +T + H AL D+ DV Sbjct: 153 WPRP-RVLCTVRLARRVLSREEAPSVRLASLARLFAVTT--QPTHRALDDARATVDVLHA 209 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 ++ N G T + + + +P+++ +R K R+ E L Sbjct: 210 LIERVG--NQGVHT-----YADLRGYLPDVTPTQRRK----RVLAEGL 246 >gi|119357378|ref|YP_912022.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides DSM 266] gi|119354727|gb|ABL65598.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides DSM 266] Length = 219 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 9/177 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M R +V D ETTGL + DR IEIGAV L+++ + +Q + P G + S Sbjct: 1 MHRTMADSVVVLDFETTGLSPQYGDRAIEIGAV-LVEHGEIVDRYQKLMNP-GFRISRFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+E L +P + +EF +F N +AHNA FD F++ EL+R + + Sbjct: 59 ESYTGITNEMLSGQPCCEEVMTEFSEFIAGHN--IVAHNASFDRRFLDFELKRAKR--VY 114 Query: 120 PSRIIDTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +L ++RR + S + L +L GI S H AL D+ + + +++ M+ Sbjct: 115 EGACCCSLLVSRRIYQDSPNHKLQTLVSHAGIP-EIGSFHRALADAEMTAHLWMSMI 170 >gi|284040095|ref|YP_003390025.1| DNA polymerase III subunit epsilon [Spirosoma linguale DSM 74] gi|283819388|gb|ADB41226.1| DNA polymerase III, epsilon subunit [Spirosoma linguale DSM 74] Length = 180 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG R+ EI D + +F L P G P L GI+DE Sbjct: 2 YCIVDVETTGGVKGPTRLTEIAIFRH-DGQQVVDSFHSLLNP-GCPIPPFIRHLTGISDE 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P+F+ + ++ + Q+A ++AHN FD FI EL + D L R + T+ Sbjct: 60 MVQDAPTFADVANDVLNI--TQDAIFVAHNVGFDFSFIQKELNWLGHDFL--RRTLCTVR 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +R+ P L LC+ I ++ R H A D+ ++ ++ +Q Sbjct: 116 TSRKLLPGYPSYSLGKLCRSLEIPLNGR--HRAQGDAAATVLLFEMLLKNDAQ 166 >gi|116617801|ref|YP_818172.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096648|gb|ABJ61799.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 1437 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + DRIIE+ AV+ + F ++ P G S KL ITD Sbjct: 419 FVAFDLETTGLSAVTDRIIELSAVK-MQLGNVIEKFSEYINP-GFPLSEFTTKLTSITDA 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + +I F ++ NA + HN FDVGF+NA R N+ P+ + IIDTL Sbjct: 477 MVANSDTEENIIKRFREW--SGNAVLVGHNVTFDVGFMNAAYTRYNQ-PIITNAIIDTLP 533 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +P + L ++ KR+ I + H A+ D+ + +++ Sbjct: 534 FTRWLYPDYKSYRLGTIAKRFNINLE--QAHRAIFDAETTGHIAWRLI 579 >gi|119387836|ref|YP_918870.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] gi|119378411|gb|ABL73174.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] Length = 706 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 10/175 (5%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61 ++ VFD ETTGL+ + D II+IGA+ +L+ F + P GR+ PE++ Sbjct: 511 LERLSYTVFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDP-GREIPPESIP 569 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HGI E ++ +P + + F + + + HN FD+ F+ + P Sbjct: 570 YHGIHPEMVQGQPRIAEVLPAFHAY--ASDTVLVGHNVAFDMRFLQLKEAATGLRFDQP- 626 Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL +A P + L ++ R G+ I+ R H AL D+ + ++V+++++ Sbjct: 627 -VLDTLLLASIAQPHEPSHSLEAIAARLGVEITQR--HNALSDALVTAEVFLRLL 678 >gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 318 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170 >gi|296140382|ref|YP_003647625.1| DNA polymerase III subunit epsilon [Tsukamurella paurometabola DSM 20162] gi|296028516|gb|ADG79286.1| DNA polymerase III, epsilon subunit [Tsukamurella paurometabola DSM 20162] Length = 610 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 23/222 (10%) Query: 4 KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 ++ +V D+ETTG K D I EIGAV++ F + P R +P L Sbjct: 17 LREVTFVVVDLETTGGSPKGGDAITEIGAVKVRGGEVLGE-FATLVDPE-RGIAPHITHL 74 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT + P+ +S+ F +F Q A +AHNA+FD+GF+ A P + Sbjct: 75 TGITTAMVTGAPTIASVLPAFLEF--AQGAVLVAHNARFDIGFLKAAAAATG-TPWPKPQ 131 Query: 123 IIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + T+ +ARR L+ + + + + H AL D+ DV ++ G Sbjct: 132 TLCTVQLARRVLTRDEAPSVKLSEMARLFRAETT--PTHRALDDARATVDVLHGLI--GR 187 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDK-----PLFTRI 216 N G +T F E + +P+++ +R K PL R Sbjct: 188 VGNLGIRT-----FAELRGHLPSVTPQQRAKRGLADPLPERP 224 >gi|326692542|ref|ZP_08229547.1| DNA polymerase III, alpha subunit [Leuconostoc argentinum KCTC 3773] Length = 1437 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 8/173 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + D+IIE+ AV++ + ++ F ++ P G S +L ITD Sbjct: 419 FVAFDLETTGLSAVTDKIIELSAVKMQLGNVVDQ-FSEYINP-GFPLSEFTTELTSITDS 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + S + F D+ +A I HN FD+GF+NA R + P + +IDTL Sbjct: 477 MVANADPESDVIQRFRDWVG--DAVLIGHNVTFDIGFMNAAYARY-QKPAIGNPVIDTLP 533 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R +P + L ++ KR+ I + H A+ DS + ++M + Sbjct: 534 FTRWLYPDYKSYRLGTIAKRFNINLE--QAHRAIFDSETTGHIAWRLMKEAKE 584 >gi|315640656|ref|ZP_07895761.1| DNA polymerase III [Enterococcus italicus DSM 15952] gi|315483595|gb|EFU74086.1| DNA polymerase III [Enterococcus italicus DSM 15952] Length = 911 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + K DRI + G V + + R F + P GR SP+ L T++ Sbjct: 4 YAIVDIETTGTNPKEDRIFQFGCVFVENGEIVGR-FATMIHP-GRSISPQIQHLTHTTNK 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+NAEL+R + L + IDT+ Sbjct: 62 DVRHSPYFEDVAPTIYELLS--GTVFVAHNIHFDYRFLNAELERCGCERL-QLKGIDTVE 118 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +A+ P+ L+ L + G ++H H A D+ + + ++I + + + Sbjct: 119 LAQILFPTEISFRLSDLSESLG--LAHERPHQADSDAEVTAQLFIALEQRLASLPL 172 >gi|163782848|ref|ZP_02177844.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159881969|gb|EDP75477.1| DNA polymerase III epsilon subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 194 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 9/178 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG D + II+IGAV ++ TF + P G +L GIT+ Sbjct: 10 FVAIDVETTGFDVNHAEIIDIGAVR-VEGGIITETFSSLVDP-GFFIPDRIKELTGITNA 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + F DF ++ + H+ D+ FI+ + + I TL Sbjct: 68 MLVGSPKMIEVLPRFMDFIG--DSIIVGHHISQDIKFIDKYTRLYGEGKF-RRPYICTLE 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++R+ PS R+ L + + + S H AL D+ + + V+++++ N+G Sbjct: 125 LSRKLLPSLPRHSLKEMADYFSVDYS--RLHRALDDALITAQVFLELLNLLWS-NYGI 179 >gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM 43183] gi|268312236|gb|ACY98610.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM 43183] Length = 605 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 13/208 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + I E+GAV++ + F + P G P L GIT + Sbjct: 44 FVVVDLETTGGSPADSAITEVGAVKVRGGERLGE-FATLVDP-GVPIPPFITALTGITQQ 101 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P S++ F +F + +AHNA FD+GF+ A + P ++DT Sbjct: 102 MVTNAPPMSAVLPAFLEF--ARGCVLVAHNAPFDIGFLRAACTAHDH-PWPAFPVVDTAD 158 Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +ARR L +L + + H AL D+ DV ++ ++G Sbjct: 159 LARRVLTREEVPNCKLATLARYF--RTGTEPCHRALADARATVDVLHGLIERLG--SYGV 214 Query: 186 KTNED-RFFKEEKKTVPNISLLKRDKPL 212 + E+ R F + D Sbjct: 215 HSLEELRAFAKTPTPEQRRKRHLADGMP 242 >gi|77409408|ref|ZP_00786106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae COH1] gi|77171990|gb|EAO75161.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae COH1] Length = 1468 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 423 MNLHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSDFTTE 480 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD ++ + EF +F Q +AHNA FDVGF+NA +R N PL Sbjct: 481 LTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQ 537 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ + + H H A D+ + Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALEHH--HMANYDAEATGRLL 586 >gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15] gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15] Length = 318 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170 >gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al Hakam] gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus NVH0597-99] gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB108] gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB102] gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42] gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1] gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al Hakam] gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB108] gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus NVH0597-99] gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB102] gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1] gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42] Length = 315 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVL 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|325955495|ref|YP_004239155.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922] gi|323438113|gb|ADX68577.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922] Length = 466 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIET G + + I EI A+ L + + +Q + P + L GIT E Sbjct: 11 YAIVDIETNGSAAAHGGITEI-AIFLHNGKEIIDEYQTLVNPE-KPIPFHIQTLTGITPE 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P F + + + + + A ++AHN FD F++ + + D + T+ Sbjct: 69 MLVDAPRFDEVAKDVYSYL--EKAIFVAHNVSFDFSFLHKQFLDVGIDWKPI--KLCTVR 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR+ P + L SLCK I + R H A D+ + ++ +++ Sbjct: 125 LARKIFPGYTSYSLGSLCKNLNIPLHDR--HRAAGDAKATTILFEQLL 170 >gi|77405656|ref|ZP_00782744.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae H36B] gi|77175729|gb|EAO78510.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae H36B] Length = 1468 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 423 MNLHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSDFTTE 480 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD ++ + EF +F Q +AHNA FDVGF+NA +R N PL Sbjct: 481 LTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQ 537 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ + + H H A D+ + Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALEHH--HMANYDAEATGRLL 586 >gi|330469366|ref|YP_004407109.1| hypothetical protein VAB18032_27181 [Verrucosispora maris AB-18-032] gi|328812337|gb|AEB46509.1| hypothetical protein VAB18032_27181 [Verrucosispora maris AB-18-032] Length = 584 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 103/255 (40%), Gaps = 25/255 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I EIGAV++ + + P G P L GIT+ Sbjct: 32 FVVVDLETTGGAPDGGGITEIGAVKVRGGEELG-VLATLVNP-GVPIPPFITVLTGITEA 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L PS + F +F + +A +AHNA +DVGF+ A R +P R++DT + Sbjct: 90 MLLPAPSIEQVLPSFLEFVS--DAVLVAHNAPYDVGFLKAACARHGYRWPNP-RVLDTAA 146 Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +ARR L +L + + H AL D+ DV ++ +GG +++ Sbjct: 147 LARRVLLRDEVPNRKLGTLAAYF--RAATTPTHRALDDARATVDVLHGLIGRLGGHRVDT 204 Query: 184 GFKTNE-----------DRFFKEEKKTVPNISLLKR--DKPLFTRITKEELDEHDKTIQT 230 + E R + P + + + D+PL+ +++ Sbjct: 205 IGEAIEFARAVTPTQRRKRHLADGLPRSPGVYIFRAADDRPLYVGTSRDIATRVRSYFTA 264 Query: 231 LGKNAIWDRYISSNQ 245 K A +++ + Sbjct: 265 AEKRARISEMLAAAE 279 >gi|228914217|ref|ZP_04077833.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845421|gb|EEM90456.1| DnaQ family exonuclease/DinG family helicase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 927 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 10/166 (6%) Query: 13 DIETTGLDSKN--DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG K+ D+I +I AV + D + F F+ P R+ P +L GI + + Sbjct: 2 DLETTGNSWKDGKDKITQIAAVVVEDG-EILEIFSSFINPK-REIPPFITELTGIDESMV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 K P F + + Q A ++AHN FD F+ EL++ + +DT+ +A Sbjct: 60 KQAPLFEDVAPMVVELL--QGAAFVAHNVHFDWNFLTEELRQAGYTEIH-CPKVDTVELA 116 Query: 131 RRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P++ L L K++ + H H A D+ ++++++ + Sbjct: 117 QILLPTADSYKLRDLAKQH--ELEHDQPHRADSDALATAELFLQFL 160 >gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264] gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24] gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis BMB171] gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus B4264] gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24] gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis BMB171] Length = 315 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +A++ + L +L + GI +S H A D + VY K + Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQKCVA 170 >gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 315 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|218898703|ref|YP_002447114.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus G9842] gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus G9842] Length = 315 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|76787214|ref|YP_330464.1| DNA polymerase III PolC [Streptococcus agalactiae A909] gi|76562271|gb|ABA44855.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae A909] Length = 1468 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 423 MNLHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQ-FDEFIDP-GHPLSDFTTE 480 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD ++ + EF +F Q +AHNA FDVGF+NA +R N PL Sbjct: 481 LTGITDNHVRGSKPILQVLQEFQNFC--QGTVLVAHNATFDVGFMNANYERHNL-PLITQ 537 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ + + H H A D+ + Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALEHH--HMANYDAEATGRLL 586 >gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 315 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|183508608|ref|ZP_02958116.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182676065|gb|EDT87970.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 1442 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 5/167 (2%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FDIETTGL D IIE GAV + + + Q F+ P ++ + L I+ E Sbjct: 409 YVIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFVKP-IQQINENVTNLTNISQE 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + + + F++ +AHN FD+ FIN L + +PL + IDTL Sbjct: 468 MVNNAIDEKTALLKIKEIFDDH--ILVAHNGINFDINFINQRLLKWGLEPL-KNPSIDTL 524 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I+R +P + L ++CK+Y + + H A D+ +L+DV+ M Sbjct: 525 MISRAINPFKSHRLGAICKKYEVDYNDEIAHRADYDAIVLTDVFKVM 571 >gi|162447117|ref|YP_001620249.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A] gi|161985224|gb|ABX80873.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A] Length = 1504 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 28/188 (14%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFDIETTG D+IIEI A ++ F+V + P + S ++ ITDE Sbjct: 412 YTVFDIETTGFSFTRDKIIEIAAYKVR-GGFIAERFEVLINPEEQ-LSETTKRITNITDE 469 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++ + + F +F + +AHNA FD+GFI + + + +P +IDTL+ Sbjct: 470 MVENEKTIEEVLPTFLEFI--KGTVLVAHNASFDIGFIYEKSRLLGLQH-EPFAVIDTLN 526 Query: 129 IARRKH---------------------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 IAR + R +L +L K + + + + H A+ D++ Sbjct: 527 IARYFYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLE--AHHRAIYDAYAT 584 Query: 168 SDVYIKMM 175 ++V++ M+ Sbjct: 585 AEVFLNML 592 >gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2] gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876] gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876] gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2] Length = 318 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170 >gi|326333554|ref|ZP_08199794.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] gi|325948663|gb|EGD40763.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] Length = 580 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 99/237 (41%), Gaps = 30/237 (12%) Query: 4 KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + V D+ETTG N I EIGAV++ FQ + P+ P L Sbjct: 39 LRDLTFCVVDLETTGNSPDNGGMITEIGAVKVRGGEVLGE-FQTLVNPHTG-IPPSIAVL 96 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT+ + P+ S+ F +F + +AHNA FDVGF+ + + P Sbjct: 97 TGITNSMVASSPTIESVLPAFLEF--AEGCVLVAHNAPFDVGFLKHFAAKQER-PWPRFE 153 Query: 123 IIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++DT+ IARR + + + L SL + +G + H AL D+ DV MM Sbjct: 154 VLDTVKIARRVITRDEAPNHKLGSLARVFGSPTT--PNHRALQDARATVDVLHGMMERLG 211 Query: 180 QINFGFKTNED---------------RFFKEEKKTVPNISLLK--RDKPLFTRITKE 219 N G T ED R E+ P + L K +D+ L+ +K+ Sbjct: 212 --NLGVLTLEDLAAFSAKVTTAQRKKRHLAEDLPHAPGVYLFKDSQDRVLYIGTSKD 266 >gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676] gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676] Length = 318 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170 >gi|315604561|ref|ZP_07879624.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310] gi|315313573|gb|EFU61627.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310] Length = 525 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 84/214 (39%), Gaps = 12/214 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL ++ I EIGAV + + F + P G P L GIT Sbjct: 10 WVVVDLETTGLGAR-AEITEIGAVRVREGRLC-EEFSSLVRPVG-PIPPAITALTGITPA 66 Query: 69 FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ +++ F + + +AHNA FD+GF+ + P R++D Sbjct: 67 MVRGADPIATVLDRFLTWAGFEAKDPVVLVAHNAPFDIGFLRRAAAACSL-PWPRVRVVD 125 Query: 126 TLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 TL++AR P + L ++ +G + H AL D+ ++V + + + Sbjct: 126 TLALARLALPRPIVRNHKLATVASYFG--TATVPGHRALGDARATAEVLLGFVDLLAGAG 183 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + + P D P + Sbjct: 184 ASDVEDLVALSAQAPNVSPKTPSFVADLPPSPGV 217 >gi|331696575|ref|YP_004332814.1| DNA polymerase III subunit epsilon [Pseudonocardia dioxanivorans CB1190] gi|326951264|gb|AEA24961.1| DNA polymerase III, epsilon subunit [Pseudonocardia dioxanivorans CB1190] Length = 586 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 12/217 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ +V D+ETTG S N I EIGAV++ + P G P + Sbjct: 24 TPLREVTFVVLDLETTGGSSANHSITEIGAVKVRGGEVLGE-LATLVDP-GTGVPPGVVA 81 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT + P + + +F A +AHNA FD GF+ A +R ++ P Sbjct: 82 LTGITTAMVTGAPRLAQVLPTLLEFMG--GAVLVAHNAPFDAGFLRAACERHDRRWPRP- 138 Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + T +AR L +L + +G + + H AL D+ +V +++ Sbjct: 139 PQLCTARLARAVLSRAEAPSVRLGALARLFG--TATQPTHRALADARATVEVLHRLLERV 196 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 N G ++ E+ + R + R Sbjct: 197 G--NLGVQSLEELLALARGASAHRPPEQVRRRRTLAR 231 >gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L] gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L] Length = 315 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 9/169 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GI Sbjct: 7 PLNYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGI 64 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+ + D P+ + F F + +AHNA FD+ F+ + + + P +++ID Sbjct: 65 TNYRVSDAPTIEEVLPVFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVID 121 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T+ +A++ + L +L + GI +S H A D + VY K Sbjct: 122 TVFLAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|82703123|ref|YP_412689.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] gi|82411188|gb|ABB75297.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC 25196] Length = 463 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 10/170 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 ++ D+ETTG +DRIIEI + + ++ R ++ + P G P L GI Sbjct: 3 PFPYVILDLETTGGTPLHDRIIEIALIRFEEGMESER-WETLVNP-GISIPPFITHLTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ +KD PSF I + F + A AHN +FD GF+ E +R+ L R++ Sbjct: 61 SNGMVKDAPSFGDIAHRLYGFLD--GAVLAAHNVRFDYGFLKNEYRRMG--ALLQHRVLC 116 Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T ++R+ +P + + L+++ +R+G+ R H A+ D L++ Y++M Sbjct: 117 TARLSRKLYPQHKGHGLDAIMQRHGLKTEMR--HRAMGDVELVA-AYLEM 163 >gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78] Length = 329 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 12/206 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ + + + + P P + +HG+T E Sbjct: 21 YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I E + + +AHNA FD + E R R + T++ Sbjct: 77 VLEGAPLFPEIAEELSRRLDGR--VLVAHNAVFDWSMLAREYARAGI-TAPVRRRLCTIA 133 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P + L +L +G+ R H AL D+ +L++ + + + Sbjct: 134 LAKELALPLPNHKLETLAAHFGVE--QRRAHHALDDARVLAEAFRPSLRAAALGGVRLPL 191 Query: 188 NEDRFFKE--EKKTVPNISLLKRDKP 211 E R E + P I +P Sbjct: 192 LECRPLTEWSDSPARPTIGRQYGSRP 217 >gi|227495535|ref|ZP_03925851.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] gi|226831082|gb|EEH63465.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] Length = 206 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 10/192 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + + DIETTGL +D I E+ AV+ + TF + P GR+ +L Sbjct: 12 LENLTLVSVDIETTGL-GDSDAITELAAVKYQKG-QVVETFSSLVNP-GRQIPVFITRLT 68 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI ++ + D P+ + F +F + + +AHNA+FD F+ ++ + P+ Sbjct: 69 GIDNQLVADAPTLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQFPAS- 127 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 IDT+ +R P + L +L +GI + H AL D++ ++Y K ++ Sbjct: 128 IDTVFFSRALLPRPQVQNHRLGTLAHHFGIKNPN--AHRALADAYTCLELY-KCLLDVLH 184 Query: 181 INFGFKTNEDRF 192 G + E F Sbjct: 185 AADGVELPEAVF 196 >gi|254821932|ref|ZP_05226933.1| hypothetical protein MintA_18512 [Mycobacterium intracellulare ATCC 13950] Length = 323 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 22/222 (9%) Query: 2 IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 + +V D+ETTG +K+ D I EIGAV++ F + P R Sbjct: 10 LSLRDTTFVVVDLETTGGRTKSAAGTEPDAITEIGAVKVRGGVVLGE-FATLIDPQ-RSI 67 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN-EQNAEWIAHNAKFDVGFINAELQRIN 114 P+ ++L GIT + D P+ ++ F +F +Q A +AHNA FD+GF+ A QR + Sbjct: 68 PPQVVRLTGITTAMVSDAPTIDAVLPMFLEFARLDQGAVLVAHNAGFDIGFLRAAAQRCD 127 Query: 115 KDPLDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P +++ T+ +ARR + + L SL + + +T + H AL D+ DV Sbjct: 128 IAWPRP-QVLCTVRLARRVLSREEAPSVRLASLARLFAVTT--QPTHRALDDARATVDVL 184 Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 ++ N G T + + + +P+++ +R K + Sbjct: 185 HALIERVG--NQGVHT-----YADLRSYLPDVAPAQRRKRVL 219 >gi|118616866|ref|YP_905198.1| DNA polymerase [Mycobacterium ulcerans Agy99] gi|118568976|gb|ABL03727.1| DNA polymerase [Mycobacterium ulcerans Agy99] Length = 500 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 106/252 (42%), Gaps = 22/252 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG ++ DR++E+G V L + + P+ A + HGI Sbjct: 98 FAVLDFETTGFAAEYDRVVEVGLVLLSAEGDIEDEWSTLINPHR---DVGATERHGIRAR 154 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RIIDTL 127 + P+F +I + + ++AHN FD F+ AEL+R +P + T+ Sbjct: 155 DVLGAPAFEAIIPRLLR--DLRGRVFVAHNVNFDQRFLLAELRRAGVPLDNPWLTGLCTM 212 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM-VGGSQINFGFK 186 A R P++ L C G+ ++ H AL D+ + + ++ GS + + Sbjct: 213 RWAGRLLPAASRKLPDCCDAAGVFLTD--AHRALADARATASLLKYLIDHCGSPPPWAKE 270 Query: 187 TNEDRFFKEEKKTVPNISLLKR-------DKP---LFTRITKEELDEHDKTIQT---LGK 233 + F+ + P + L+ R +P RI E D +++ + + Sbjct: 271 IDGAEDFEWPQVAGPEVRLVTRAAWGAAPPRPPAGWLDRIVARMPHEDDPRVESYLEILE 330 Query: 234 NAIWDRYISSNQ 245 +A+ D Y+S ++ Sbjct: 331 SALLDCYLSCHE 342 >gi|86130357|ref|ZP_01048957.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] gi|85819032|gb|EAQ40191.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134] Length = 466 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 9/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + D+ETTG +RI E AV L D ++ F + P + P Sbjct: 1 MTELAPTYHCIIDVETTGKGINGNRITEFCAVRLKDGEIIDK-FTSLVNPE-QYIPPFIT 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GI D ++D P F I + + A ++AHN FD I E +R+ + Sbjct: 59 NLTGIDDAMVEDAPLFEEIAQRVLEI--TEGAIFVAHNVNFDFNVIKGEFKRLGVSFV-- 114 Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + T+ ++R+ P+ L +LC GI +++R H A D+ ++ +++ Sbjct: 115 RKKLCTVRLSRKLIPNLFSYSLGNLCASIGIPLNNR--HRAEGDTDATVILFKRLL 168 >gi|255316545|ref|ZP_05358128.1| DNA polymerase III PolC [Clostridium difficile QCD-76w55] Length = 285 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 13/177 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ N+ +V DIETT K RI+EIGAV++ + + F + P K + Sbjct: 11 MLNYNE--FVVVDIETTAFSIQKGGRILEIGAVKIKNGEIVDN-FSTLVNPE-LKIPKKI 66 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPL 118 +L IT++ +KD P ++ +F +F + ++ +AHNA FD F+ L I Sbjct: 67 TELTKITNDMVKDAPYIGNVLQKFNEFIS--DSVIVAHNASFDWDRFLKPALATIGIK-- 122 Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +++DT+S+++ P ++ L LC + + H A+ D+ + ++K+ Sbjct: 123 SSHKVMDTVSLSKFTFPDKKKHTLIDLCSYLEVPLEKN--HRAIDDAIATAKCFLKL 177 >gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16] gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16] Length = 528 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG D++ DRI EIG VE+ + L P G P ++ GIT+E Sbjct: 30 IVFVDLETTGADAQRDRITEIGVVEVGPDGII--EWDTLLDP-GMSIPPFIQRMTGITEE 86 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +PSF S+ + Q ++AHNA+FD GF+ +R + ++ T+ Sbjct: 87 MVRGQPSFESLAESLAERL--QGRLFVAHNARFDYGFLKNAFRRAGVTF--RADVLCTVR 142 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R PS R+ L++L R+G+T R H AL D+ LL + K+ Sbjct: 143 LSRSLFPSVERHGLDALIARFGLTPKGR--HRALADAELLWQFWQKI 187 >gi|241895743|ref|ZP_04783039.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313] gi|241870786|gb|EER74537.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313] Length = 1437 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 8/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D++IE+ AV+++ + F F+ P G S + L ITD+ Sbjct: 421 YVVFDVETTGLSAAYDKVIELSAVKMVKGNVIAE-FSEFIDP-GFSLSQTTVDLTSITDD 478 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S +F+ F +F+ +A + HN FD+GF+N +R + + +IDTL+ Sbjct: 479 MVRGSKSEKEVFTAFREFYG--DAILVGHNVTFDMGFMNEGYERHGMGSI-TNPVIDTLT 535 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +AR +P+ R LN+L K +G+ + H A+ DS + Sbjct: 536 LARFLYPNMRSYRLNTLAKHFGVLLEQH--HRAIFDSETTGHL 576 >gi|302880064|ref|YP_003848628.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] gi|302582853|gb|ADL56864.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans ES-2] Length = 204 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 10/192 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG+ + DR E+ V + D ++R +Q + G P L GI++E Sbjct: 5 AVIDFETTGMSPELGDRATEVAVVIVSDGKISSR-YQSLMN-TGAYIPPFIEDLTGISNE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + + E DF A W+AHNA FD F++AE R+ ++ Sbjct: 63 MIRQAPPAAQVMKELADFVGA--APWVAHNASFDSRFLDAEWSRMGHR--REQAFACSML 118 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR +P S + L +L + G+ + R H AL D+ + + ++++M+ G Sbjct: 119 LARRLYPDSPNHKLGTLVRFLGLPDTAR-HHRALADAEMTAHLWLRMVSDLKNRQ-GLDV 176 Query: 188 NEDRFFKEEKKT 199 F + +K Sbjct: 177 VTHEFLRALQKV 188 >gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 375 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 10/172 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ + D+ETTG RI EIG VE+ T+ + P G+ P +L Sbjct: 10 ASEQPLVFVDLETTGGTPAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQPIPPFIQQLT 66 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+D ++D PSF+ + ++ + ++AHNA FD GF+ AE +R + Sbjct: 67 GISDAMVRDAPSFAELAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGFAFNPD--V 122 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + T+ ++R P SR+ L++L R+G+ + ++H AL D+ LL + + Sbjct: 123 LCTVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLLWQFWRHL 172 >gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH1134] gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185] gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH1134] gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185] Length = 315 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|323126468|gb|ADX23765.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1465 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L+ ++ F DF +++ +AHNA FDVGF+NA +R N P Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHNL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLRDARE 592 >gi|163732758|ref|ZP_02140203.1| exonuclease, putative [Roseobacter litoralis Och 149] gi|161394118|gb|EDQ18442.1| exonuclease, putative [Roseobacter litoralis Och 149] Length = 465 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 7/176 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60 R + +VFD ETTGLD D ++++GAV +++ F + P GR P + Sbjct: 266 TRLRDLTFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNP-GRTIPPGST 324 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +H I D + D P F F F ++A +AHNA FD+ F+ + + N+D Sbjct: 325 AVHQINDAMVADAPGFDVACRAFHQF--AEHAVIVAHNAPFDMAFLRRQCR--NQDYAFD 380 Query: 121 SRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++DT+ ++ S + L++LC R + I +H L D+ + + ++ Sbjct: 381 NPVLDTVHLSAVVFGGSAEHTLDALCNRLNVHIPDDVRHTGLGDALATAKALVALI 436 >gi|254443946|ref|ZP_05057422.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] gi|198258254|gb|EDY82562.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] Length = 205 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV + T R FQ + P R S GIT+ Sbjct: 8 VVLDFETTGLSPSLGDRAIEIGAVRIEGGEVTGR-FQELMNPGCR-ISGFIEDYTGITNG 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D + F +F N +AHNA FD F++AEL RI++ + + ++ Sbjct: 66 MLRDAEPCEVVMERFAEFIGGHN--LVAHNASFDQRFLDAELARISQRRV--GDFVCSML 121 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ARR + N L +L + ++ H AL DS + + ++I+M+ Sbjct: 122 AARRLFQDAPNHQLGTLVRYANFSVDG-VFHRALYDSEMTTKLWIRML 168 >gi|251781676|ref|YP_002995978.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390305|dbj|BAH80764.1| DNA polymerase III subunit alpha [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1465 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L+ ++ F DF +++ +AHNA FDVGF+NA +R N P Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHNL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLRDARE 592 >gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar konkukian str. 97-27] gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus anthracis CI] gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar konkukian str. 97-27] gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar anthracis str. CI] Length = 315 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293] gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293] Length = 315 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC 17616] gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 398 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 10/172 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ + D+ETTG RI EIG VE+ T+ + P G+ P +L Sbjct: 33 ASEQPLVFVDLETTGGTPAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQPIPPFIQQLT 89 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+D ++D PSF+ + ++ + ++AHNA FD GF+ AE +R + Sbjct: 90 GISDAMVRDAPSFAELAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGFAFNPD--V 145 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + T+ ++R P SR+ L++L R+G+ + ++H AL D+ LL + + Sbjct: 146 LCTVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLLWQFWRHL 195 >gi|229174271|ref|ZP_04301804.1| DNA polymerase III alpha subunit [Bacillus cereus MM3] gi|228609128|gb|EEK66417.1| DNA polymerase III alpha subunit [Bacillus cereus MM3] Length = 318 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + IAHNA FD+ F+ + + + P +++IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIIAHNASFDMRFLKSNVSMLGL-PEPQNKVIDTVF 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170 >gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4] gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4] Length = 318 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 127 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKHATNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 170 >gi|90577496|ref|ZP_01233307.1| putative DNA polymerase III [Vibrio angustum S14] gi|90440582|gb|EAS65762.1| putative DNA polymerase III [Vibrio angustum S14] Length = 207 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 9/169 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L++ ++ FQ + P G + S GI++ Sbjct: 11 VVLDFETTGLSPNQGDRAIEIGAVKLVNGEVVDQ-FQQLMNP-GFRVSSFIEGYTGISNN 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P + + F DF +A +AHNA FD F++AEL I + ++ Sbjct: 69 MLRTAPPCNEVMDAFADFIG--DANLVAHNASFDQRFLDAELADIGR--YYTGTFTCSML 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 IARR + + L +L I + H AL DS + + +++ M+ Sbjct: 125 IARRLYQHAPNHKLGTLVDFKHIE-HNGVFHRALADSEMTARLWLVMIE 172 >gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893] gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893] Length = 483 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 DIETTG + +DRI EIG + +Q + P R SP L GIT++ Sbjct: 13 FAFLDIETTGGNPSHDRITEIGIRFWRAGAVVGE-WQTLVNPETR-ISPFIESLTGITND 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P F I ++ ++AHNA+FD GFI AE +R+ L ++++ T+ Sbjct: 71 MVADAPVFEDIAEVLEKQL--KDTIFVAHNARFDYGFIKAEFRRLGL--LFSAKVLCTVK 126 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++R+ +P R+++++L +R+G + +H AL D + + +V Sbjct: 127 LSRKLYPGFRRHNMDALIERHG--LEQVQRHRALGDVAAMMAFFEHALV 173 >gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 315 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 315 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|297620852|ref|YP_003708989.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU 86-1044] gi|297376153|gb|ADI37983.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU 86-1044] Length = 231 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 11/169 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I +D ETTG+ +++DRI+EI A + + + + + P G EA K+H ITD Sbjct: 4 RPIFYDTETTGIKAEHDRIVEIAAYDPISGC----SLEELVNP-GIPIPKEASKVHHITD 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126 + +KD P+F + +F +F + + IAHN FDV F+ E +R + + R DT Sbjct: 59 DMVKDAPTFKEVGQKFIEFCSG-DVILIAHNNDNFDVHFLRHEFKRHALE-MPEWRFFDT 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L ARR P R+ L L + Y I ++ H AL D +L V+ KM Sbjct: 117 LKWARRYRPDLPRHALQFLREIYSIEANN--AHRALDDVIVLHKVFEKM 163 >gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] Length = 331 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 11/201 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ + + + + P P + +HG+T E Sbjct: 19 YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I E + + +AHNA FD + E R R + T++ Sbjct: 75 VLEGAPLFPEIAGELSRRLDGR--VLVAHNAVFDWSMLAREYARAGI-TAPVRRRLCTIA 131 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P + L +L +G+ R H AL D+ +L++ + + + N Sbjct: 132 LAKELALPLPNHKLETLAAHFGVE--QRRAHHALDDARVLAEAFRPSLRAAALGNVRLPL 189 Query: 188 NEDRFFKEEKKTVPNISLLKR 208 E R E + P ++ R Sbjct: 190 LECRPLTEWSDS-PARPVIGR 209 >gi|194246813|ref|YP_002004452.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] gi|193807170|emb|CAP18609.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] Length = 1449 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 16/200 (8%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N ++FD ETTGL ND+IIEI A+++ + + FQ + P ++ +P L Sbjct: 404 LNLATYVIFDFETTGLSKINDQIIEIAAIKIQNNQIIDE-FQTLINPQ-QELTPFIENLT 461 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I+++ LK++P ++I +F F +N+ IAHN FD+GF+ + ++ L+ Sbjct: 462 NISNQDLKNQPLIATILPKFLKFC--ENSILIAHNISFDMGFLVNQTKKHLNLKLNL-PF 518 Query: 124 IDTLSIARRKHPS-SRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 IDTL++AR S R +L SL K + I+ + H A+ D + ++ +++ Sbjct: 519 IDTLNLARYCLDSNLRYFNLKSLAKYFKISFENH--HRAMSDVLITKTIFQQLLN----- 571 Query: 182 NFGFKTNEDRFFKEEKKTVP 201 T +F+++ K T+P Sbjct: 572 --YLLTKNIQFYQQLKLTLP 589 >gi|296166059|ref|ZP_06848506.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898580|gb|EFG78139.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 648 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 27/227 (11%) Query: 4 KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +V D+ETTG +K D I EIGAV++ F + P R P Sbjct: 38 LRDTTFVVVDLETTGGRTKATGGNAPDAITEIGAVKVRGGVVLGE-FATLVDPE-RSIPP 95 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + ++L GIT + D P ++ F +F +A +AHNA FD+GF+ A R + Sbjct: 96 QIVRLTGITTAMVSDAPRIDAVLPMFLEFAG--DAVLVAHNAGFDIGFLRAAAARCDIAW 153 Query: 118 LDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P +++ T+ +ARR + + L +L + + + + + H AL D+ +V + Sbjct: 154 PRP-KVLCTVRLARRVLSREEAPSVRLGALARLFAV--AAQPTHRALDDARATVEVLHAL 210 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 + N G T + + + +P+++ +R K R+ E L Sbjct: 211 IERVG--NQGVHT-----YADLRSYLPDVTPTQRRK----RVLAEGL 246 >gi|330999159|ref|ZP_08322878.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] gi|329575359|gb|EGG56903.1| putative DNA polymerase III, epsilon subunit [Parasutterella excrementihominis YIT 11859] Length = 248 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 20/220 (9%) Query: 22 KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFS 81 + DRIIEIG VEL ++ T++ F ++ P R+ E +++H IT+EFL KP F+ I Sbjct: 5 EGDRIIEIGCVELGEHGLTDKNFHEYIDPE-RQMEAEVIRVHKITNEFLVGKPKFADIAD 63 Query: 82 EFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP----SRIIDTLSIARRKHPSS 137 +F +F Q A I HNA+FD+GF+N EL+++ K ++ IID++ +A+ P Sbjct: 64 KFIEFV--QGARLIIHNAQFDIGFLNEELRKLGKPSMEEICGKDNIIDSMELAKAAFPQM 121 Query: 138 RNDLNSLCKRYGITISHRSK--HGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKE 195 N L++LCKR I + R K HGALLD+ LL VY+ + + Sbjct: 122 HNSLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYLVLKQQQGILEIDAAPVSADVHDI 181 Query: 196 EKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 +P R T+E+L E+++ ++ + K A Sbjct: 182 SDVELP-----------VIRATEEDLSENERVLEMVRKAA 210 >gi|90408002|ref|ZP_01216174.1| putative DNA polymerase III [Psychromonas sp. CNPT3] gi|90310846|gb|EAS38959.1| putative DNA polymerase III [Psychromonas sp. CNPT3] Length = 210 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 10/204 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M ++ +V D ETTGL + DR IEIGAV +++ T++ FQ + P R NS Sbjct: 1 MNQRFADTIVVLDFETTGLSPNQGDRAIEIGAVRIVNGEVTDQ-FQALMNPGIRVNS-FI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT+ LK+ S S + ++F DF + N +AHNA FD F++ EL I++ Sbjct: 59 EDYTGITNHMLKEAASCSDVMAQFCDFIGDDN--LLAHNASFDKKFLDNELDEISRT--Y 114 Query: 120 PSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L ++RR S + L +L K+ ++ H AL D+ + + +++ M+ Sbjct: 115 QGEFTCSLLVSRRINIDSQSHSLGNLVKQLNLS-EEGGFHRALFDAQMTAKLWLHMLDNI 173 Query: 179 SQINFGFKTNEDRFFKEEKKTVPN 202 SQ +G K ++ T N Sbjct: 174 SQ-TYGIKRPLFSLMQQIANTPKN 196 >gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus H3081.97] gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187] gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1] gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26] gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus H3081.97] gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH187] gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1] gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26] Length = 315 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|254469279|ref|ZP_05082684.1| exonuclease, DNA polymerase III, epsilon subunit family [Pseudovibrio sp. JE062] gi|211961114|gb|EEA96309.1| exonuclease, DNA polymerase III, epsilon subunit family [Pseudovibrio sp. JE062] Length = 471 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 7/172 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64 + +VFD ETTGL D I++IGAV +++ T + P GR + +H Sbjct: 276 DLSFVVFDTETTGLMPNKDEIVQIGAVRVVNRRIIPGETVDQLVNP-GRPIPAASTGVHR 334 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD+ + + P + S+F F ++A +AHNA FD+ F+ P I+ Sbjct: 335 ITDDMVVNAPDPVTATSDFHVF--AKDAVIVAHNAPFDMAFLQRYGHMSGHVWDHP--IL 390 Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+ ++ + + + L++LC R I I +H AL D+ + K++ Sbjct: 391 DTVLLSAVVFGAEQEHTLDALCARLDIEIPEALRHTALGDAQATAQALCKLL 442 >gi|19746871|ref|NP_608007.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS8232] gi|24418360|sp|Q8NZB5|DPO3_STRP8 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|19749113|gb|AAL98506.1| DNA polymerase III alpha chain [Streptococcus pyogenes MGAS8232] Length = 1465 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L+ ++ F DF +++ +AHNA FDVGF+NA +R N P Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHNL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLRDARE 592 >gi|332522391|ref|ZP_08398643.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus porcinus str. Jelinkova 176] gi|332313655|gb|EGJ26640.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus porcinus str. Jelinkova 176] Length = 1466 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 421 MDLHEATYVVFDVETTGLSAINNDLIQIAASKMYKGNIIEQ-FDEFINP-GHPLSSFTTE 478 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD L + + F F Q+A +AHNA FDVGF+NA +R + PL Sbjct: 479 LTGITDNHLIGAKTLLQVLEAFQAFC--QDAILVAHNASFDVGFMNANYERHHL-PLIKQ 535 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ +++ H H A D+ + Sbjct: 536 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLL 584 >gi|290579638|ref|YP_003484030.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025] gi|254996537|dbj|BAH87138.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025] Length = 1470 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + N+ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S Sbjct: 423 MDMNEATYVVFDVETTGLSAINNDLIQIAASKMHKGNIVEQ-FDEFIDP-GHPLSQFTTD 480 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ +K + EF F Q+ +AHNA FDVGF+NA +R + P Sbjct: 481 LTGITDQHVKGAKPILQVLQEFQSFC--QDTVLVAHNATFDVGFMNANYERHDL-PKITQ 537 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ +++ H H A D+ + Sbjct: 538 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 586 >gi|256424475|ref|YP_003125128.1| DNA polymerase III subunit epsilon [Chitinophaga pinensis DSM 2588] gi|256039383|gb|ACU62927.1| DNA polymerase III, epsilon subunit [Chitinophaga pinensis DSM 2588] Length = 456 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 11/188 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + + I EI A+ + D + ++ + P G L GITDE Sbjct: 2 YAIVDIETTGGHASANGITEI-AIYIYDGRNIVQQYETLINP-GVPIPRYIQSLTGITDE 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P+F + + + +++ ++AHN FD FI L + ++ + T+ Sbjct: 60 MVANAPAFDEVAGDIFALLHDK--IFVAHNVNFDYSFIQYHLAQAGYQL--RTKKLCTVR 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG--GSQINFGF 185 + R+ P L +LCK I+++ R H A D+ ++ ++ G I Sbjct: 116 LGRKIIPGLPSYSLGNLCKSLEISVTQR--HRAAGDAAATVKLFGLLLQQDTGKAIAHAL 173 Query: 186 KTNEDRFF 193 T+ F Sbjct: 174 STHSKEQF 181 >gi|312887472|ref|ZP_07747071.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM 18603] gi|311300112|gb|EFQ77182.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM 18603] Length = 456 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + ++ TNR F+ + P G L GI ++ Sbjct: 2 YAIVDIETTGGHASAHGITEIAIIIHDGHTITNR-FETLINP-GMLIPMHIQVLTGIDND 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ P FSSI ++ + ++AHN FD F+ L D P + T+ Sbjct: 60 MVKNAPPFSSIAQHVYEIL--EPCTFVAHNVNFDYSFVKHHLMASGYDLQSP--KLCTVR 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + R+ P L C GI S ++H A+ D+ + ++ M++ + Sbjct: 116 LGRKIFPGLPSYSLGKFCGHMGIDNS--ARHRAMGDADATAKLFSMMLLNDKE 166 >gi|228986699|ref|ZP_04146829.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773030|gb|EEM21466.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 315 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|229818165|ref|ZP_04448447.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM 20098] gi|229784416|gb|EEP20530.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM 20098] Length = 186 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG+ DRIIEIGAV +++ + + P GR L GI+DE Sbjct: 19 YVVVDLETTGISPARDRIIEIGAVR-VEHGTVTAEYSKLVNP-GRPVGGFITGLTGISDE 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + ++ +F + +AHNA FD+ F+ R P IDTL Sbjct: 77 MVGNASPIEAVLPDFLAHLRPSDT-IVAHNANFDINFLYDNCMRTLGKPFSYD-FIDTLR 134 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P R + L L +R+GI + +H L D+ + Y +M Sbjct: 135 LSRALFPQERQHRLVDLIQRFGI--ADEEEHRGLSDALQTVECYERM 179 >gi|309799630|ref|ZP_07693854.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302] gi|308116752|gb|EFO54204.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302] Length = 681 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 8/169 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +VFD+ETTGL + + +I++ A ++ + F F+ P G S +L Sbjct: 421 LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNIIAE-FDEFINP-GHHLSAFTTELT 478 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD+ +K+ + EF +F ++ +AHNA FDVGF+NA +R P + Sbjct: 479 GITDDHVKNAKPLVQVLKEFQEFC--KDTVLVAHNATFDVGFMNANYERHGL-PKITQPV 535 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 536 IDTLEFARNLYPEYKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLL 582 >gi|21702589|gb|AAM75986.1|AF481102_22 DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps] Length = 203 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 5/181 (2%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + R +V D ETTGL + R+ E+G VE+ T F ++ P R + A +H + Sbjct: 2 QTRYVVLDTETTGLSPRYHRLAEVGCVEIACGRITGNFFHSYINPRQR-MTRGAQAVHRL 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-- 123 DEFL ++P+F +I F + + HN FD+ F++A L P Sbjct: 61 RDEFLAEQPTFRAIAQRLLFFL--CRSTLVGHNLSFDLNFLDAGLATAGFMPAARYCHGV 118 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDT+ ++ R L++ C R G+ R++HGAL D+ LL++ ++ I + Sbjct: 119 IDTMLHLAQRGRRRRFSLDACCDRLGVRRGDRARHGALEDAVLLAEAFVVAKRTLPPIGY 178 Query: 184 G 184 Sbjct: 179 H 179 >gi|71904322|ref|YP_281125.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS6180] gi|123747742|sp|Q48R90|DPO3_STRPM RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|71803417|gb|AAX72770.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180] Length = 1465 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L+D ++ F DF +++ +AHNA FDVGF+NA +R + P Sbjct: 478 LTGITDKHLQDAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLRDARE 592 >gi|227432323|ref|ZP_03914316.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351929|gb|EEJ42162.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 1437 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 8/173 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + DRIIE+ AV+ + F ++ P G S KL ITD Sbjct: 419 FVAFDLETTGLSAVTDRIIELSAVK-MQLGNVIEKFSEYINP-GFLLSEFTTKLTSITDA 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + + +I F ++ NA + HN FDVGF+NA R N+ P+ + IIDTL Sbjct: 477 MVANSDTEENIIKRFREW--SGNAVLVGHNVTFDVGFMNAAYTRYNQ-PIITNAIIDTLP 533 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R +P + L ++ KR+ I + H A+ D+ + +++ + Sbjct: 534 FTRWLYPDYKSYRLGTIAKRFNINLE--QAHRAIFDAETTGHIAWRLIKEAQE 584 >gi|183983226|ref|YP_001851517.1| hypothetical protein MMAR_3235 [Mycobacterium marinum M] gi|183176552|gb|ACC41662.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 674 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 23/219 (10%) Query: 4 KNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 + +V D+ETTG + D I EIGAV++ F + P R P Sbjct: 52 LRETTFVVVDLETTGGRATGTEASPPDAITEIGAVKVRGGVILGE-FATLVDPQ-RSIPP 109 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + ++L GIT L D P+ S+ F++F N+ +AHNA FD+GF+ A R + Sbjct: 110 QIVRLTGITTAMLCDAPTIDSVLPMFFEFVG--NSVLVAHNAGFDIGFLRAAAGRCDIAW 167 Query: 118 LDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 S+++ T+ +ARR + + L +L + + +++ + H AL D+ +V + Sbjct: 168 -PGSKVLCTVRLARRVLSREEAPSVRLAALARLF--SVATQPTHRALDDARATVEVLHAL 224 Query: 175 MVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 + N G + + E + +P ++ +R K + Sbjct: 225 IERVG--NQGVHS-----YAELRAYLPGVTPAQRRKRVL 256 >gi|294140713|ref|YP_003556691.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12] gi|293327182|dbj|BAJ01913.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12] Length = 206 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 9/177 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M I+ D ETTGL + DR IEIGAV + D TFQ + P G + S Sbjct: 1 MSSLAANSVIILDFETTGLSPNQGDRAIEIGAVRIQDG-IVVDTFQELMNP-GFRVSGFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GI++ L + + + F DF + N +AHNA FD F++AEL IN Sbjct: 59 EGYTGISNAMLANAAPCEEVMARFADFIGDHN--LVAHNASFDQRFLDAELDGINLSY-- 114 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++ IARR + + L L + I H AL DS + + ++++M+ Sbjct: 115 GGKFACSMLIARRLYQDAPNHKLGGLVEYKQIENDG-VFHRALADSEMTAKLWLQML 170 >gi|254522385|ref|ZP_05134440.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] gi|219719976|gb|EED38501.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14] Length = 169 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 68/166 (40%), Positives = 93/166 (56%), Gaps = 7/166 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + D ETTG+ + R+IEIGAVEL+D T R F +L P RK A ++HGI+ Sbjct: 3 RIVALDTETTGISHRLGHRVIEIGAVELIDGQLTGRQFHTYLQPQ-RKVDRGAQRVHGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD--PLDPSRII 124 D L KP FSS +E F + +E +AHNA FDVGF++ EL+ RI Sbjct: 62 DAMLVGKPLFSSKAAELLAFL--RGSEMVAHNATFDVGFLDNELRLSGIPGTLAQHCRIT 119 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +L +AR + P N L+ + +R I +R HGAL D+HLL+ V Sbjct: 120 CSLKLARGRWPGQGNKLDDVLQRLRIP-GNRGLHGALKDAHLLAQV 164 >gi|229031267|ref|ZP_04187273.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271] gi|228730025|gb|EEL80999.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271] Length = 315 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579] gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579] Length = 315 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHATNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045] gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045] Length = 336 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 85/202 (42%), Gaps = 11/202 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T E Sbjct: 22 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTTVNPER---DPGPVWIHGLTSE 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + EF + +AHNA FD I E R ++P R + T++ Sbjct: 78 ALEGAPLFHEVAGEFAARLTGR--VLVAHNAVFDWSMIAREYARAGQEPPVRQR-LCTIA 134 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + L +L +G+ R H AL D+ +L++ + + ++ N Sbjct: 135 LSKALALPLPNHKLETLAAHFGVV--QRRAHHALDDARVLAEAFRPSLHAAARDNVRLPL 192 Query: 188 NEDRFFKEEKKTVPNISLLKRD 209 E E T P I Sbjct: 193 LECLPLTEWSAT-PRIGRQATP 213 >gi|322374172|ref|ZP_08048705.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C150] gi|321276877|gb|EFX53949.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C150] Length = 1464 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G S + Sbjct: 419 LELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIIEQ-FDEFIDP-GYPLSAFTTE 476 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD +K + EF F Q +AHNA FDVGF+NA +R N+ P Sbjct: 477 LTGITDNHVKGAKPLLQVLQEFQVFC--QGTVLVAHNATFDVGFMNANYER-NQLPTISQ 533 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+G+ + H H A D+ + Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRFGVALDHH--HMANYDAEATGRLL 582 >gi|332312340|gb|EGJ25435.1| ATP-dependent helicase [Listeria monocytogenes str. Scott A] Length = 931 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 9/171 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + + R IV D+ETTG + + DRII+ A ++ K T+ FL P + Sbjct: 1 MEQMKQKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L GI+ + +K+ P F + + ++ ++AHN FD F+ E+ R L Sbjct: 59 QELTGISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LG 115 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + +DT+ +AR +P L L + + H H A D+ + +D Sbjct: 116 KMKKLDTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 164 >gi|324327507|gb|ADY22767.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar finitimus YBT-020] Length = 315 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPQNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|257439598|ref|ZP_05615353.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] gi|257197965|gb|EEU96249.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] Length = 1417 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 18/222 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGLD + + EIGAV + + + F F+ P G+ +P+ +L GIT+E Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIVRNG-EVVEEFDTFVKP-GKPITPKITELTGITNE 454 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P F F +AHNA FD+ F+ A +R IDTL Sbjct: 455 MVADAPGEKEALEAFLRF--ADGRILVAHNAHAFDIRFLKAAAKRSGISFEPT--YIDTL 510 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ------ 180 ++A+ +P N ++ K + + H A DS L ++ M+ ++ Sbjct: 511 TMAQAMYPGLHNYKQGTINKH--LELPSYEAHRACEDSAALGRIFCVMLSDLAEKEVTTV 568 Query: 181 --INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 IN G N + K+ + + K L+ +++ Sbjct: 569 EGINTGLGGNREVLKKKYFHLIILVKNQMGLKNLYKIVSEAH 610 >gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular protein) [Cupriavidus taiwanensis LMG 19424] gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular protein) [Cupriavidus taiwanensis LMG 19424] Length = 532 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG D++ DRI EIG VE+ ++ L P G P ++ GI+D+ Sbjct: 33 IVFVDLETTGADAQRDRITEIGVVEVGPDGIV--EWETLLDP-GMSIPPFIQRMTGISDD 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +P+F S+ + Q ++AHNA+FD GF+ +R + ++ T+ Sbjct: 90 MVRGQPTFESLAESLAERL--QGRLFVAHNARFDYGFLKNAFRRAGVTF--RADVLCTVR 145 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R PS R+ L++L R+G+T R H AL D+ LL + K+ Sbjct: 146 LSRSLFPSVERHGLDALIARFGLTPKGR--HRALADAELLWQFWQKI 190 >gi|225867817|ref|YP_002743765.1| DNA polymerase III PolC-type [Streptococcus equi subsp. zooepidemicus] gi|197941223|gb|ACH78331.1| DNA polymerase [Streptococcus equi subsp. zooepidemicus] gi|225701093|emb|CAW97928.1| DNA polymerase III PolC-type [Streptococcus equi subsp. zooepidemicus] Length = 1465 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIIEQ-FDEFINP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD L + F F Q +AHNA FDVGF+NA R + Sbjct: 478 LTGITDNHLVGAKPIQQVLEAFQAFC--QGTILVAHNASFDVGFMNANYDRYGLAKIS-Q 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL +AR +P R+ L L KR+ +++ H H A D+ + Sbjct: 535 PVIDTLELARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 583 >gi|209809036|ref|YP_002264574.1| exonuclease [Aliivibrio salmonicida LFI1238] gi|208010598|emb|CAQ80976.1| exonuclease [Aliivibrio salmonicida LFI1238] Length = 227 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 10/192 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L + +R FQ + P G + S GIT+ Sbjct: 31 VVLDFETTGLSPNQGDRAIEIGAVKLENGVIVDR-FQKLMNP-GFRVSSFIANYTGITNA 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L +++ EF DF Q +AHNA FD F++AEL I +D +L Sbjct: 89 MLMGADDCATVMHEFADFI--QGCNLVAHNASFDQRFLDAELDAIQRD--YDGTFACSLL 144 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++RR + + L L + I H AL D+ + + ++ ++ + ++ K+ Sbjct: 145 VSRRLTQEAPSHKLGELVAYHQIDNDG-VFHRALADAEVTASLWQVLL-DTLESDYAIKS 202 Query: 188 NEDRFFKEEKKT 199 + ++ KT Sbjct: 203 PDFSLMQKIAKT 214 >gi|89072880|ref|ZP_01159437.1| putative DNA polymerase III [Photobacterium sp. SKA34] gi|89051402|gb|EAR56857.1| putative DNA polymerase III [Photobacterium sp. SKA34] Length = 207 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 9/169 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L++ ++ FQ + P G + S GI++ Sbjct: 11 VVLDFETTGLSPNQGDRAIEIGAVKLVNGEIVDQ-FQQLMNP-GFRVSSFIEGYTGISNN 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P + F DF +A +AHNA FD F++AEL I + ++ Sbjct: 69 MLRTAPPCHEVMDAFADFIG--DANLVAHNASFDQRFLDAELADIGR--YYTGTFTCSML 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 IARR + + L +L I + H AL DS + + +++ M+ Sbjct: 125 IARRLYQHAPNHKLGTLVDFKHIK-HNGVFHRALADSEMTARLWLVMLE 172 >gi|310642523|ref|YP_003947281.1| dnaq family exonuclease/ding family helicase [Paenibacillus polymyxa SC2] gi|309247473|gb|ADO57040.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus polymyxa SC2] Length = 960 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 98/237 (41%), Gaps = 10/237 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D ETTG S +D II++G + + +R + ++ P GR P L GIT Sbjct: 1 MKFAVLDFETTGTQSADD-IIQVGLAIIDHDNSISRVYGSYVNP-GRSIPPFITGLTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +KD P+ + E + + + HN FD F+ + L R P RI+DT Sbjct: 59 DDDVKDAPALEEMMMELVPMLD--DVVLVGHNVAFDFNFLQSALDRCGYLPFS-GRILDT 115 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + + PS S L + +G ++H H A D+ ++V++K + + Sbjct: 116 MDFLKIMFPSLSSYQLGFVSSEFG--LAHDRPHQADSDALATAEVFLKCLGELQALPLIT 173 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWDRYIS 242 F EE + R++ I E + + + ++ W + Sbjct: 174 IQRLSDLFAEEDSDLGWFLDGIREEKELDPIQDLEKHQFFRQLALKVED--WTELAT 228 >gi|195978859|ref|YP_002124103.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975564|gb|ACG63090.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 1465 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIIEQ-FDEFINP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD L + F F Q +AHNA FDVGF+NA R + Sbjct: 478 LTGITDNHLVGAKPIQQVLEAFQAFC--QGTILVAHNASFDVGFMNANYDRYGLAKIS-Q 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL +AR +P R+ L L KR+ +++ H H A D+ + Sbjct: 535 PVIDTLELARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 583 >gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp. Tu6071] Length = 331 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 10/200 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ + + + + P P + +HG+T E Sbjct: 19 YAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I E + + +AHNA FD + E R R + T++ Sbjct: 75 VLEGAPLFPEIAEELSRRLDGR--VLVAHNAVFDWSMLAREYARAGI-TAPVRRRLCTIA 131 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P + L +L +G+ R H AL D+ +L++ + + + Sbjct: 132 LAKELALPLPNHKLETLAAHFGVE--QRRAHHALDDARVLAEAFRPSLRAAALGGVRLPL 189 Query: 188 NEDRFFKEEKKTVPNISLLK 207 E R E + ++ + Sbjct: 190 LECRPLTEWSDSPARPTIGR 209 >gi|228928662|ref|ZP_04091698.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229123127|ref|ZP_04252334.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201] gi|228660421|gb|EEL16054.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201] gi|228830981|gb|EEM76582.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 315 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|228992309|ref|ZP_04152240.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM 12442] gi|228767334|gb|EEM15966.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM 12442] Length = 315 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + NDRII++ AV ++ ++ F F+ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDRIIQVAAVRYRNHELADQ-FVSFVNPE-RFIPNRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F E +AHNA FD+ F+ + + + + P + +IDT+ Sbjct: 68 RVSDAPTIQEVLPLFLAFLGED--TIVAHNASFDMRFLKSNAKML-RLPEPKNIVIDTVF 124 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A+R +R + L +L + GI +S H AL D + VY K Sbjct: 125 LAKRYMKHARNHKLETLKRMLGIRLS---SHNALDDCITCAAVYQK 167 >gi|126737494|ref|ZP_01753224.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. SK209-2-6] gi|126720887|gb|EBA17591.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. SK209-2-6] Length = 465 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 10/179 (5%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSP 57 +R +R VFD ETTGL D I++IGA+ +++ F+ + P G Sbjct: 248 LRTRPLRSLSFTVFDTETTGLLPHKDEIVQIGALRVVNGRLVNGEGFETLVNP-GFDIPA 306 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + +HG+T E +++ P + + F F +++ +AHNA FD+ F+ + D Sbjct: 307 ASTAVHGVTTEMVRNSPMIKTAGAAFHQFC--KDSVLVAHNAPFDIAFLRRHAKSSGVDW 364 Query: 118 LDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DT+ ++ +S + L++LC R I I +H A+ D+ ++ ++M+ Sbjct: 365 --NHMVLDTVLLSAVIFGASVPHTLDALCDRLEINIPEALRHTAMGDAQATAEALLRML 421 >gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes DSM 40736] Length = 330 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 12/198 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T E Sbjct: 23 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTMVNPER---DPGPVWIHGLTSE 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I EF + +AHNA FD I E R ++ + + + T++ Sbjct: 79 ALEGAPLFQDIAEEFTTRL--EGRVLVAHNAVFDWQMIAREYARAQRE-VPVRQRLCTIA 135 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + L SL YG+ R H AL D+ +L++ + + + Sbjct: 136 LSKELGLPLPNHKLESLAAHYGVV--QRRAHHALDDARVLAEAFQPSLRAAAAGGVRLPL 193 Query: 188 NEDRFFKE--EKKTVPNI 203 E R E ++ P I Sbjct: 194 LECRPLTEWSDRPATPRI 211 >gi|260205487|ref|ZP_05772978.1| hypothetical protein MtubK8_14429 [Mycobacterium tuberculosis K85] gi|289574877|ref|ZP_06455104.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289539308|gb|EFD43886.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length = 645 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 23/223 (10%) Query: 2 IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 + ++ +V D+ETTG + D I EIGAV++ + F + P Sbjct: 36 MSLSETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSI 93 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+ ++L GIT + + P+ ++ F++F ++ +AHNA FD+GF+ A +R + Sbjct: 94 PPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDI 151 Query: 116 DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +++ T+ +ARR L +L + + + + H AL D+ DV Sbjct: 152 TWPQP-QVLCTMRLARRVLSRDEAPSVRLAALARLFAV--ASNPTHRALDDARATVDVLH 208 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 ++ N G T + E + +PN++ +R K + Sbjct: 209 ALIERVG--NQGVHT-----YAELRSYLPNVTQAQRCKRVLAE 244 >gi|255532547|ref|YP_003092919.1| DNA polymerase III subunit epsilon [Pedobacter heparinus DSM 2366] gi|255345531|gb|ACU04857.1| DNA polymerase III, epsilon subunit [Pedobacter heparinus DSM 2366] Length = 456 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 9/164 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V DIETTG + + I EI + D + ++ + P G++ L GI+ Sbjct: 1 MLYAVVDIETTGGFASGNGITEISILVH-DGREVVEAYETLINP-GQEIPAYIETLTGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + P F + +E + +++ ++AHN FD FI L D + + T Sbjct: 59 NEMVVTAPLFGGVAAEIYAMLHDK--IFVAHNVNFDFSFIKHHLSLSGYDL--RCKKLCT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R+ P S L LC I I R H A D+ ++ Sbjct: 115 VRLSRKLFPGYSSYSLGKLCNALNIAIHDR--HRAGGDARATAE 156 >gi|293189820|ref|ZP_06608534.1| putative DNA polymerase III, epsilon subunit [Actinomyces odontolyticus F0309] gi|292821235|gb|EFF80180.1| putative DNA polymerase III, epsilon subunit [Actinomyces odontolyticus F0309] Length = 540 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 12/209 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL + I EIGAV + D + + F + P+ R P L GIT Sbjct: 19 WVVVDLETTGLGA-GAEITEIGAVRIRDGAVVDE-FSSLVKPS-RPIPPFITSLTGITPA 75 Query: 69 FLKDKPSFSSIFSEFWDF--FNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + D +S+ F ++ ++ +AHNA FDVGF+ + P R++D Sbjct: 76 MVADADPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARAC-ARPWPRVRVVD 134 Query: 126 TLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 TL++AR P + L ++ +G + +H AL D+ +++ + + + Sbjct: 135 TLALARLALPRPLVRNHKLGTVASYFG--TATVPEHRALGDARATAEILLGFIDLLAAAG 192 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + + P+ D P Sbjct: 193 ATDVEDLIVLTDQAPARRPSTPDFVTDLP 221 >gi|71907536|ref|YP_285123.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] gi|71847157|gb|AAZ46653.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] Length = 453 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 10/170 (5%) Query: 7 MRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR + F D+ETTG + +DRI EIG VE +D + R +Q + P G + P +L GI Sbjct: 1 MRPLAFVDLETTGATATHDRITEIGIVE-VDADGSVREWQQLVNP-GMRIPPFIEQLTGI 58 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +DE + D P F +I E + +IAHNA+FD GF+ E +R+ + ++ Sbjct: 59 SDEMVADAPPFEAIAGEVMKRL--EGRLFIAHNARFDYGFLKNEFKRLGVTF--RAAVLC 114 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ ++R P R++L+SL +R+ + ++H AL D+ L+ + K+ Sbjct: 115 TVKLSRTLFPEHKRHNLDSLIERH--ELRAEARHRALADAQLIHQFWQKI 162 >gi|317125104|ref|YP_004099216.1| DNA polymerase III subunit epsilon [Intrasporangium calvum DSM 43043] gi|315589192|gb|ADU48489.1| DNA polymerase III, epsilon subunit [Intrasporangium calvum DSM 43043] Length = 590 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 86/212 (40%), Gaps = 17/212 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R + +V D+E+TG I EIGAV++ FQ + P Sbjct: 13 TRLADVTFVVVDLESTGGSPAQCGITEIGAVKVRGGDVIGE-FQTLVNP-AEPIPAFISV 70 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD + D P S F F +F + +AHNA FD+ F+ A R P Sbjct: 71 LTGITDAMVADSPRIESAFPAFLEF--AAGSVLVAHNAGFDISFLKAAAVRTG-TPWPGF 127 Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++DTL++AR+ + L+SL + + + H AL D+ DV ++ Sbjct: 128 DVLDTLTLARQLVTRDEVPNHKLSSLARVFASPTT--PDHRALHDARATVDVLHGLIERV 185 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 N G T E E +S +R K Sbjct: 186 G--NLGVHTLE-----ELASYTSRVSPAQRRK 210 >gi|295703510|ref|YP_003596585.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium DSM 319] gi|294801169|gb|ADF38235.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus megaterium DSM 319] Length = 933 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTG K D++I+ AV + D R F FL P G P +L I Sbjct: 4 RFVVVDLETTGHSPKQGDKMIQFAAVIVEDGKIVER-FSSFLNP-GMDIPPFITQLTNIQ 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ +K P F I + + + +A ++AHN FD+ F+ EL + ++ L + +DT Sbjct: 62 NDMVKGAPLFEEISPKIIELLD--DAYFVAHNVAFDLTFLQEELYQCGRETL-YNSTVDT 118 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + +AR P+ L+ L + I H + H A D+ + + + Sbjct: 119 VELARILLPTVDGYKLSQLAEYLHIE--HENPHQADSDAEVTARI 161 >gi|16801079|ref|NP_471347.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria innocua Clip11262] gi|16414514|emb|CAC97243.1| dinG [Listeria innocua Clip11262] Length = 928 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 KKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +K+ P F + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L +G + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161 >gi|259503120|ref|ZP_05746022.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041] gi|259168986|gb|EEW53481.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041] Length = 1444 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 14/204 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++FD+ETTGL + D++IE+ AV++ + R F F+ P G S + L ITDE Sbjct: 423 YVIFDVETTGLSAIYDKVIELSAVKMKNGEVLAR-FDEFIDP-GFPLSEQTTNLTSITDE 480 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ S +F F DF HN FD+GF+N +R + + +IDTL Sbjct: 481 MVRGSKSEEEVFKMFKDFCA--GTIIAGHNVSFDMGFMNTGYRRHQMEEI-TEPVIDTLP 537 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR +P+ R LN+L K++ + + H H A D+ + K + K Sbjct: 538 LARFLYPNMRGYRLNTLSKKFKVALEHH--HRANFDAEATGHLLYKFLKDAE------KR 589 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 E R+ E + + K +P Sbjct: 590 YEIRYVDELNQHMAENDAYKHARP 613 >gi|313623167|gb|EFR93428.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria innocua FSL J1-023] Length = 928 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 KKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +K+ P F + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L +G + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161 >gi|154509184|ref|ZP_02044826.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC 17982] gi|153798818|gb|EDN81238.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC 17982] Length = 550 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 12/209 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL + D I EIGAV + D + + F + P+ R P L GIT Sbjct: 29 WVVVDLETTGLGAGAD-ITEIGAVRIRDGAVVDE-FSSLVKPS-RPIPPFITSLTGITPA 85 Query: 69 FLKDKPSFSSIFSEFWDF--FNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + D +S+ F ++ ++ +AHNA FDVGF+ + P RI+D Sbjct: 86 MVADAAPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARAC-ARPWPRVRIVD 144 Query: 126 TLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 TL++AR P + L ++ +G + +H AL D+ +++ + + + Sbjct: 145 TLALARLALPRPLVRNHKLGTVASYFG--TATVPEHRALGDARATAEILLGFIDLLAAAG 202 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + + P+ D P Sbjct: 203 ATDVEDLIVLTDQAPARRPSTPDFVTDLP 231 >gi|225871273|ref|YP_002747220.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047] gi|225700677|emb|CAW95265.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047] Length = 1465 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIIEQ-FDEFINP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD L + F F Q +AHNA FDVGF+NA R + Sbjct: 478 LTGITDNHLVGAKPIQQVLEAFQAFC--QGTILVAHNASFDVGFMNANYDRYGLAKIS-Q 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL +AR +P R+ L L KR+ +++ H H A D+ + Sbjct: 535 PVIDTLELARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLL 583 >gi|257068588|ref|YP_003154843.1| hypothetical protein Bfae_14220 [Brachybacterium faecium DSM 4810] gi|256559406|gb|ACU85253.1| exonuclease, DNA polymerase III, epsilon subunit family [Brachybacterium faecium DSM 4810] Length = 551 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 13/202 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG D D I EIGAV++ F+ F+ P R L GITD Sbjct: 22 VVVDLETTGTDPAADAITEIGAVKVRGGEVLGE-FRTFVDPE-RPIPAYIASLTGITDAA 79 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + PS ++ F DF +A +AHNA+FD+GF++A+ P R++DTL++ Sbjct: 80 VAEAPSIRTVLPMFLDFAG--DAALVAHNARFDIGFLSAQAAACEITWPRP-RVLDTLAL 136 Query: 130 ARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 AR + L++L + G I+ H AL D+ DV ++ G Sbjct: 137 ARTVFRRDEVRDHRLSTLARHVGAGIT--PDHRALSDARATVDVLHAIIERLGPS--GAS 192 Query: 187 TNEDRFFKEEKKTVPNISLLKR 208 T ED ++ P K Sbjct: 193 TLED-LGTAHRRASPVQLRKKH 213 >gi|196034235|ref|ZP_03101645.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W] gi|228947225|ref|ZP_04109519.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195993309|gb|EDX57267.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W] gi|228812472|gb|EEM58799.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 315 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|254232344|ref|ZP_04925671.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|289750785|ref|ZP_06510163.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|124601403|gb|EAY60413.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|289691372|gb|EFD58801.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|323719091|gb|EGB28236.1| hypothetical protein TMMG_01471 [Mycobacterium tuberculosis CDC1551A] Length = 647 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 23/223 (10%) Query: 2 IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 + + +V D+ETTG + D I EIGAV++ + F + P Sbjct: 38 MSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSI 95 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+ ++L GIT + + P+ ++ F++F ++ +AHNA FD+GF+ A +R + Sbjct: 96 PPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDI 153 Query: 116 DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +++ T+ +ARR L +L + + + + H AL D+ DV Sbjct: 154 TWPQP-QVLCTMRLARRVLSRDEAPSVRLAALARLFAV--ASNPTHRALDDARATVDVLH 210 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 ++ N G T + E + +PN++ +R K + Sbjct: 211 ALIERVG--NQGVHT-----YAELRSYLPNVTQAQRCKRVLAE 246 >gi|281202348|gb|EFA76553.1| DNA polymerase III [Polysphondylium pallidum PN500] Length = 725 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 5/169 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + FD+ET+G +D IIEIGAVEL++ +T TFQ + P + P A ++H +++ Sbjct: 320 RVVCFDLETSGFGP-DDSIIEIGAVELINGCRTGLTFQSYAKPKTQ-IHPAAEQIHQLSN 377 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L+D P + S F DF ++ +AHN FD + EL R + T+ Sbjct: 378 FLLQDAPPIEFVLSSFMDFVG--DSILVAHNLAFDRRMLIQELVRSKTPFDINHKCFCTM 435 Query: 128 SIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMM 175 R+ + S L+S+ ++ I + R HGAL+DS +L+ VY ++ Sbjct: 436 RYFRKMYKDSNYSLDSISQQLKINKLLLRRTHGALVDSEILAIVYKHLL 484 >gi|56808719|ref|ZP_00366439.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus pyogenes M49 591] gi|209560099|ref|YP_002286571.1| DNA polymerase III PolC [Streptococcus pyogenes NZ131] gi|209541300|gb|ACI61876.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131] Length = 1465 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L+D ++ F DF +++ +AHNA FDVGF+NA +R + P Sbjct: 478 LTGITDKHLQDAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592 >gi|222099149|ref|YP_002533717.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM 4359] gi|281411717|ref|YP_003345796.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila RKU-10] gi|221571539|gb|ACM22351.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM 4359] gi|281372820|gb|ADA66382.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila RKU-10] Length = 186 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 9/176 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59 + N + V D ETTG D DRIIEI AV + +NR F + P+ R Sbjct: 1 MIWNDIIFCVVDTETTGTDPFGGDRIIEIAAVPVFKGKIFSNRAFHSLVNPHVR-IPALI 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGI++E +++ P +++ F D+ + + HNA FD+ F++ + PL Sbjct: 60 QKVHGISNEEVEEAPDMGTVYERFRDYV--KGTVLVFHNANFDLTFLDMMAKETRNFPL- 116 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + IDTL I++ + L LC++ GI + +H AL D+ + + V+++++ Sbjct: 117 TNAYIDTLDISQEVF-GRPHSLKWLCEKLGIR--DKIEHRALSDALVTAKVFVRLV 169 >gi|15639630|ref|NP_219080.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025868|ref|YP_001933640.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp. pallidum SS14] gi|6014996|sp|O83649|DPO3E_TREPA RecName: Full=DNA polymerase III subunit epsilon gi|3322942|gb|AAC65617.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018443|gb|ACD71061.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp. pallidum SS14] gi|291060013|gb|ADD72748.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp. pallidum str. Chicago] Length = 215 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 10/177 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 FD ETTGL ++ DRIIEIGAV D F + P+ R P+ K++ ITD+ Sbjct: 15 FTAFDTETTGLKAEEDRIIEIGAVTF-DRKGIIARFSTLIFPD-RAIPPDVSKINHITDD 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L +KP F I S+F F + +AHNA FDV F+NAEL K PL +++DT + Sbjct: 73 MLVNKPRFCEIVSDFSRFI--KGTVLVAHNANFDVEFLNAELSLCKKQPLS-HKVVDTYA 129 Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +A+ P + L +L ++G+T+ + H A D+ + +++ M+ ++ N Sbjct: 130 MAQAVFPGLGRHQYRLQNLALQFGLTV--HAAHRAEDDARVCMELFTTMIAHHAKQN 184 >gi|313115651|ref|ZP_07801107.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310622037|gb|EFQ05536.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 1417 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 18/222 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFD ETTGLD + + EIGAV + + + F F+ P G+ +P+ +L GIT+E Sbjct: 397 FCVFDTETTGLDPGVEYMTEIGAVIVKNG-EVVEEFDTFVKP-GKPITPKITELTGITNE 454 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P F F ++ + HN FD+ F+ A +R IDTL Sbjct: 455 MVADAPGEKEALEAFLKFAGDR--ILVGHNVHAFDMRFLRAAAKRSGIKLEPT--YIDTL 510 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--------VGG 178 ++A+ +P N ++ K + + H A DS L ++ M+ Sbjct: 511 TMAQAMYPGLHNYKQGTINKH--LELPAYEAHRACEDSAALGRIFGVMLNDLKEKQVAKV 568 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 S+IN G N + K+ + + K L+ +++ Sbjct: 569 SEINTGLGGNREVLKKKYYHLIILVKNQMGLKNLYKIVSEAH 610 >gi|229162442|ref|ZP_04290403.1| DNA polymerase III alpha subunit [Bacillus cereus R309803] gi|228620921|gb|EEK77786.1| DNA polymerase III alpha subunit [Bacillus cereus R309803] Length = 315 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 19/208 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-LEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQKC----------ASI 171 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215 E++ KE K + + + K + R Sbjct: 172 EEEKTRKENKVVLDETVVYEAVKEILVR 199 >gi|94991249|ref|YP_599349.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10270] gi|166217452|sp|Q1JEV4|DPO3_STRPD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|94544757|gb|ABF34805.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270] Length = 1465 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L+D ++ F DF +++ +AHNA FDVGF+NA +R + P Sbjct: 478 LTGITDKHLQDAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592 >gi|125625168|ref|YP_001033651.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris MG1363] gi|124493976|emb|CAL98973.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp. cremoris MG1363] gi|300071977|gb|ADJ61377.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris NZ9000] Length = 1635 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 8/187 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G + S +L GITD+ Sbjct: 593 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDD 650 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + ++F F + +AHNA FDVGF+N R P+ ++DTL Sbjct: 651 HVKNAKPLYEVLTKFQKFC--EGTILVAHNASFDVGFMNMNYSRNGL-PIISQPVVDTLE 707 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR +P R L L K++ I + H H A D+ + + N G+ + Sbjct: 708 FARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDAEATGRLLFVFLEELRTRNTGWTS 765 Query: 188 NEDRFFK 194 + K Sbjct: 766 LLELNAK 772 >gi|31793370|ref|NP_855863.1| hypothetical protein Mb2214 [Mycobacterium bovis AF2122/97] gi|121638072|ref|YP_978296.1| hypothetical protein BCG_2207 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990566|ref|YP_002645253.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo 172] gi|31618962|emb|CAD97067.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121493720|emb|CAL72195.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773679|dbj|BAH26485.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo 172] Length = 645 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 23/223 (10%) Query: 2 IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 + + +V D+ETTG + D I EIGAV++ + F + P Sbjct: 36 MSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSI 93 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+ ++L GIT + + P+ ++ F++F ++ +AHNA FD+GF+ A +R + Sbjct: 94 PPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDI 151 Query: 116 DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +++ T+ +ARR L +L + + + + H AL D+ DV Sbjct: 152 TWPQP-QVLCTMRLARRVLSRDEAPSVRLAALARLFAV--ASNPTHRALDDARATVDVLH 208 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 ++ N G T + E + +PN++ +R K + Sbjct: 209 ALIERVG--NQGVHT-----YAELRSYLPNVTQAQRCKRVLAE 244 >gi|166032846|ref|ZP_02235675.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC 27755] gi|166027203|gb|EDR45960.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC 27755] Length = 232 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIETTGL +++ IIEIGA+++ + +R F F+ P P +L GIT++ Sbjct: 5 YVAFDIETTGLSPEHNEIIEIGALKVREGKVVDR-FIRFIEPEAG-IPPMITQLTGITND 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + + EF +F I HN +FD F+ + + + IDTL Sbjct: 63 MVEGAGNCGEVLPEFLEFCERD--TLIGHNVQFDFSFVKTKAKELGYTYDHMG--IDTLK 118 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IA+ H L +LC+ Y I + H A D+ + +Y M Sbjct: 119 IAKVVHADLPSRKLGALCEYYHIENV--AAHRAYHDALATAKLYQSM 163 >gi|111018139|ref|YP_701111.1| hypothetical protein RHA1_ro01126 [Rhodococcus jostii RHA1] gi|110817669|gb|ABG92953.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1] Length = 588 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 17/212 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +V D+ETTG D I EIGAV++ + P GR P ++ Sbjct: 17 TPLRDTTFVVVDLETTGARPGEDAITEIGAVKIRGGEVIAE-MATLVDP-GRSIPPHIVE 74 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + GIT + D P + F +F + A +AHNA FD GF+ A + P Sbjct: 75 ITGITTAMVIDAPRIERVLPAFLEF--ARGAVLVAHNAPFDTGFLKAAASATD-TPWPKF 131 Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ T+ +ARR L+SL + + + + H AL D+ DV ++ Sbjct: 132 TVLCTVKLARRVLSRDEAPSVKLSSLARLFDVGTT--PTHRALDDARATVDVLHALI--A 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 N G + E +P++S +R K Sbjct: 188 RVGNQGVHS-----LTELVDYLPDVSSHQRAK 214 >gi|218904738|ref|YP_002452572.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH820] gi|218538798|gb|ACK91196.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH820] Length = 315 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNYKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|15609328|ref|NP_216707.1| hypothetical protein Rv2191 [Mycobacterium tuberculosis H37Rv] gi|148662008|ref|YP_001283531.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra] gi|148823398|ref|YP_001288152.1| hypothetical protein TBFG_12219 [Mycobacterium tuberculosis F11] gi|167969416|ref|ZP_02551693.1| hypothetical protein MtubH3_15860 [Mycobacterium tuberculosis H37Ra] gi|215403581|ref|ZP_03415762.1| hypothetical protein Mtub0_07840 [Mycobacterium tuberculosis 02_1987] gi|215411916|ref|ZP_03420690.1| hypothetical protein Mtub9_11341 [Mycobacterium tuberculosis 94_M4241A] gi|215427566|ref|ZP_03425485.1| hypothetical protein MtubT9_14751 [Mycobacterium tuberculosis T92] gi|215431125|ref|ZP_03429044.1| hypothetical protein MtubE_10707 [Mycobacterium tuberculosis EAS054] gi|215446420|ref|ZP_03433172.1| hypothetical protein MtubT_10948 [Mycobacterium tuberculosis T85] gi|219558170|ref|ZP_03537246.1| hypothetical protein MtubT1_13062 [Mycobacterium tuberculosis T17] gi|253798744|ref|YP_003031745.1| hypothetical protein TBMG_04035 [Mycobacterium tuberculosis KZN 1435] gi|254551229|ref|ZP_05141676.1| hypothetical protein Mtube_12318 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187187|ref|ZP_05764661.1| hypothetical protein MtubCP_14313 [Mycobacterium tuberculosis CPHL_A] gi|260201308|ref|ZP_05768799.1| hypothetical protein MtubT4_14636 [Mycobacterium tuberculosis T46] gi|289443698|ref|ZP_06433442.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289447819|ref|ZP_06437563.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289554022|ref|ZP_06443232.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289570307|ref|ZP_06450534.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289745464|ref|ZP_06504842.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis 02_1987] gi|294993576|ref|ZP_06799267.1| hypothetical protein Mtub2_03474 [Mycobacterium tuberculosis 210] gi|297634780|ref|ZP_06952560.1| hypothetical protein MtubK4_11686 [Mycobacterium tuberculosis KZN 4207] gi|297731771|ref|ZP_06960889.1| hypothetical protein MtubKR_11808 [Mycobacterium tuberculosis KZN R506] gi|298525683|ref|ZP_07013092.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313659105|ref|ZP_07815985.1| hypothetical protein MtubKV_11818 [Mycobacterium tuberculosis KZN V2475] gi|1722908|sp|Q10384|Y2191_MYCTU RecName: Full=Uncharacterized protein Rv2191/MT2247 gi|1237044|emb|CAA94260.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148506160|gb|ABQ73969.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra] gi|148721925|gb|ABR06550.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|253320247|gb|ACT24850.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289416617|gb|EFD13857.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289420777|gb|EFD17978.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289438654|gb|EFD21147.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289544061|gb|EFD47709.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289685992|gb|EFD53480.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis 02_1987] gi|298495477|gb|EFI30771.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|326903805|gb|EGE50738.1| DNA polymerase III [Mycobacterium tuberculosis W-148] gi|328458507|gb|AEB03930.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 645 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 23/223 (10%) Query: 2 IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 + + +V D+ETTG + D I EIGAV++ + F + P Sbjct: 36 MSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSI 93 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+ ++L GIT + + P+ ++ F++F ++ +AHNA FD+GF+ A +R + Sbjct: 94 PPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDI 151 Query: 116 DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +++ T+ +ARR L +L + + + + H AL D+ DV Sbjct: 152 TWPQP-QVLCTMRLARRVLSRDEAPSVRLAALARLFAV--ASNPTHRALDDARATVDVLH 208 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 ++ N G T + E + +PN++ +R K + Sbjct: 209 ALIERVG--NQGVHT-----YAELRSYLPNVTQAQRCKRVLAE 244 >gi|156741527|ref|YP_001431656.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM 13941] gi|156232855|gb|ABU57638.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM 13941] Length = 944 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 89/212 (41%), Gaps = 14/212 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL++ D IIEI AV+ + TF + P + +L GIT E Sbjct: 5 YVAIDVETTGLEAGVDEIIEIAAVKFR-TGEVIETFDTLVQP-RHSLPLNSSRLTGITAE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P FS + F F +N + HN +FD+ + A+ R+ P DT Sbjct: 63 MLAGAPRFSEVAPRFAAFL--KNYPLVGHNVRFDINMLQAQGMRL------PQPAFDTFE 114 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A P + L++L + GI H H AL D+ + V++ ++ ++ Sbjct: 115 LATLLMPRTPAYRLSALAETLGIV--HDEAHRALSDADVTRQVFLHLLRRIDALSLNDLN 172 Query: 188 NEDRFFKEEKKTV-PNISLLKRDKPLFTRITK 218 R T+ P +R K L + + Sbjct: 173 EIVRLTSRVDWTLRPLFEAAQRAKALRVFVDE 204 >gi|86137282|ref|ZP_01055859.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. MED193] gi|85825617|gb|EAQ45815.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. MED193] Length = 484 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 7/182 (3%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62 N++ VFD ETTGL D I++IGAV +L+ + P GR + ++ Sbjct: 272 LNQLCFAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDP-GRPIPEASTRV 330 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HG++ ++ P + +EF F +A +AHNA FD+ F+ + P Sbjct: 331 HGVSTAMVQGAPDIAEAAAEFHLF--ATDAVIVAHNAPFDMAFLRRHAKASGLAWDHP-- 386 Query: 123 IIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I+DT+ ++ +S + L++LC+R ITI +H AL D+ + ++M+ Sbjct: 387 ILDTVLLSAVLFGASVPHTLDALCERLDITIPPALRHTALGDAQATACALVQMIPMLQAR 446 Query: 182 NF 183 F Sbjct: 447 GF 448 >gi|116513078|ref|YP_811985.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris SK11] gi|116108732|gb|ABJ73872.1| DNA polymerase III catalytic subunit, PolC type [Lactococcus lactis subsp. cremoris SK11] Length = 1635 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 8/187 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G + S +L GITD+ Sbjct: 593 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDD 650 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + ++F F + +AHNA FDVGF+N R P+ ++DTL Sbjct: 651 HVKNAKPLYEVLTKFQKFC--EGTILVAHNASFDVGFMNMNYSRNGL-PIISQPVVDTLE 707 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR +P R L L K++ I + H H A D+ + + N G+ + Sbjct: 708 FARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDAEATGRLLFVFLEELRTRNTGWTS 765 Query: 188 NEDRFFK 194 + K Sbjct: 766 LLELNAK 772 >gi|309812650|ref|ZP_07706394.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185] gi|308433345|gb|EFP57233.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185] Length = 608 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 9/213 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + ++ D+ET G I EIGAV++ F + P G P+ + Sbjct: 21 TPLHDVTFVIVDLETAGGRPGAQGITEIGAVKVRGGEVLGE-FATLVDP-GCAIPPQIQR 78 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT + + P +S+ F++F +A +AHNA FDVGF+ A + + P Sbjct: 79 LTGITTAMVHNAPKLASVLPAFFEFLGP-DAVLVAHNAPFDVGFLTAAARDLEV-PWPAP 136 Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++DT+ +AR P + L +L +G +++ H AL D+ DV ++ Sbjct: 137 AVVDTVKLARALVPRDEVRNHRLGTLAAHFGASVN--PNHRALADAQATVDVLHALLSRA 194 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + + F + + L P Sbjct: 195 GSLGVTSREELLSFSAKVPAARRRKATLADGLP 227 >gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Frankia alni ACN14a] gi|111152024|emb|CAJ63748.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a] Length = 580 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 88/210 (41%), Gaps = 17/210 (8%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + + +V D+ETTG + I EIGAV + + + P+ P + Sbjct: 16 LSDLTFVVVDLETTGTSAATSEITEIGAVRVR-GGEVLAEMSTLVRPSAG-IPPMVSVIT 73 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD + P+ + + F +F + A +AHNA FD+GF+ A QR P Sbjct: 74 GITDAMVATAPAEAEVVPTFLEF--ARGAVLVAHNAPFDLGFLRAAAQRCGYPP-PAWEH 130 Query: 124 IDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL IARR + L SL + + S H AL D+ DV + Sbjct: 131 LDTLRIARRLVSRDEAPDCRLASLARLF--RSSTEPCHRALADARATVDVLHGL--FERL 186 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 N G +T E+ + +S +R K Sbjct: 187 GNAGVRTLEELH-----EYSARVSPAQRRK 211 >gi|15841682|ref|NP_336719.1| hypothetical protein MT2247 [Mycobacterium tuberculosis CDC1551] gi|289754299|ref|ZP_06513677.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|308232063|ref|ZP_07414780.2| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis SUMu001] gi|308369651|ref|ZP_07418557.2| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis SUMu002] gi|308370940|ref|ZP_07423289.2| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis SUMu003] gi|308372166|ref|ZP_07427656.2| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis SUMu004] gi|308373349|ref|ZP_07431961.2| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis SUMu005] gi|308374520|ref|ZP_07436352.2| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis SUMu006] gi|308375805|ref|ZP_07668121.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis SUMu007] gi|308376938|ref|ZP_07668388.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis SUMu008] gi|308377937|ref|ZP_07480989.2| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis SUMu009] gi|308379142|ref|ZP_07485216.2| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis SUMu010] gi|308380293|ref|ZP_07489432.2| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis SUMu011] gi|308404461|ref|ZP_07493965.2| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis SUMu012] gi|13881937|gb|AAK46533.1| DNA polymerase III, epsilon subunit, putative [Mycobacterium tuberculosis CDC1551] gi|289694886|gb|EFD62315.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|308215084|gb|EFO74483.1| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis SUMu001] gi|308326837|gb|EFP15688.1| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis SUMu002] gi|308330190|gb|EFP19041.1| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis SUMu003] gi|308334026|gb|EFP22877.1| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis SUMu004] gi|308337834|gb|EFP26685.1| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis SUMu005] gi|308341594|gb|EFP30445.1| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis SUMu006] gi|308345002|gb|EFP33853.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis SUMu007] gi|308349313|gb|EFP38164.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis SUMu008] gi|308354021|gb|EFP42872.1| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis SUMu009] gi|308357963|gb|EFP46814.1| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis SUMu010] gi|308361897|gb|EFP50748.1| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis SUMu011] gi|308365560|gb|EFP54411.1| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis SUMu012] Length = 637 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 23/223 (10%) Query: 2 IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 + + +V D+ETTG + D I EIGAV++ + F + P Sbjct: 28 MSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSI 85 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+ ++L GIT + + P+ ++ F++F ++ +AHNA FD+GF+ A +R + Sbjct: 86 PPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDI 143 Query: 116 DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +++ T+ +ARR L +L + + + + H AL D+ DV Sbjct: 144 TWPQP-QVLCTMRLARRVLSRDEAPSVRLAALARLFAV--ASNPTHRALDDARATVDVLH 200 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 ++ N G T + E + +PN++ +R K + Sbjct: 201 ALIERVG--NQGVHT-----YAELRSYLPNVTQAQRCKRVLAE 236 >gi|42782681|ref|NP_979928.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987] gi|42738607|gb|AAS42536.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus ATCC 10987] Length = 315 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|73537451|ref|YP_297818.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134] gi|72120788|gb|AAZ62974.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134] Length = 530 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 93/167 (55%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG D+++DRI EIG VE+ + + + L P G P +L GITDE Sbjct: 32 IVFVDLETTGADAQHDRITEIGVVEV--GPEGIQEWDTLLDP-GVSIPPFIQRLTGITDE 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +P+F+SI + Q ++AHNA+FD GF+ E +R + ++ T+ Sbjct: 89 TVQGQPTFASIAEALAERL--QGRLFVAHNARFDYGFLKNEFRRAGLTF--RADVLCTVR 144 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R PS +R+ L+++ R+ + R++H AL D+ LL + K+ Sbjct: 145 LSRSLFPSAARHGLDAIIARF--DLQPRARHRALADAELLWQFWQKI 189 >gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] Length = 375 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 10/170 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + + D+ETTG RI EIG VE+ T+ + P G+ P +L GI Sbjct: 12 EQPLVFVDLETTGGTPAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQPIPPFIQQLTGI 68 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D ++D PSF+ + ++ + + ++AHNA FD GF+ AE +R ++ Sbjct: 69 SDAMVRDAPSFAELAPALFERLDGK--LFVAHNASFDRGFLRAEFERAGFAFNPD--VLC 124 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ ++R P SR+ L++L R+G+ + ++H AL D+ LL + + Sbjct: 125 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLLWQFWRHL 172 >gi|238916793|ref|YP_002930310.1| DNA polymerase III subunit alpha, the Gram-positive type [Eubacterium eligens ATCC 27750] gi|238872153|gb|ACR71863.1| DNA polymerase III subunit alpha, the Gram-positive type [Eubacterium eligens ATCC 27750] Length = 1513 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 9/152 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ++ DRIIEIGAV++ + +R F F+ P L I D+ Sbjct: 473 YVVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDR-FSTFVNPEI-PIPFRIETLTHINDQ 530 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P I EF +F + A +AHNA+FD FI + ++I + + IIDT+ Sbjct: 531 MVMNAPKIEEILPEFLEFC--EGAVMVAHNAEFDTSFIINKAEKIGINV--DTTIIDTVL 586 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHG 159 +A+ P+ N L++L K + + S H Sbjct: 587 LAQFLMPNLHNYKLDTLTKHLNVVLE--SHHR 616 >gi|94989303|ref|YP_597404.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS9429] gi|94993192|ref|YP_601291.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS2096] gi|123257711|sp|Q1J9R4|DPO3_STRPB RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|123382486|sp|Q1JJW3|DPO3_STRPC RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|94542811|gb|ABF32860.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429] gi|94546700|gb|ABF36747.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096] Length = 1465 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L+ ++ F DF +++ +AHNA FDVGF+NA +R + P Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLRDARE 592 >gi|306826600|ref|ZP_07459906.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782] gi|304431208|gb|EFM34211.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782] Length = 1465 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L+ ++ F DF +++ +AHNA FDVGF+NA +R + P Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLRDARE 592 >gi|294498159|ref|YP_003561859.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium QM B1551] gi|294348096|gb|ADE68425.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus megaterium QM B1551] Length = 933 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 9/165 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTG K D++I+ AV + D R F FL P G P +L I Sbjct: 4 RFVVVDLETTGHSPKQGDKMIQFAAVIVEDGKIVER-FSSFLNP-GMDIPPFITQLTNIQ 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ +KD P F I + + + +A ++AHN FD+ F+ EL + ++ L + +DT Sbjct: 62 NDMVKDAPLFEEISPKIIELLD--DAYFVAHNVAFDLTFLQEELYQCGEETL-YNSTVDT 118 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + +AR P+ L+ L + I H + H A D+ + + + Sbjct: 119 VELARILLPTVDGYKLSQLAEYLHIE--HENPHQADSDAEVTARI 161 >gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] Length = 398 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 10/170 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + + D+ETTG RI EIG VE+ T+ + P G+ P +L GI Sbjct: 35 EQPLVFVDLETTGGTPAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQPIPPFIQQLTGI 91 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D ++D PSF+ + ++ + + ++AHNA FD GF+ AE +R ++ Sbjct: 92 SDAMVRDAPSFAELAPALFERLDGK--LFVAHNASFDRGFLRAEFERAGFAFNPD--VLC 147 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ ++R P SR+ L++L R+G+ + ++H AL D+ LL + + Sbjct: 148 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLLWQFWRHL 195 >gi|160902928|ref|YP_001568509.1| DNA polymerase III PolC [Petrotoga mobilis SJ95] gi|160360572|gb|ABX32186.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95] Length = 1388 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 94/193 (48%), Gaps = 9/193 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + ++ +VFD+ETTGL+ + IIEIGAV++ + ++ F + P + S Sbjct: 376 KISETEFVVFDLETTGLEPAMNEIIEIGAVKIKNMKIVSK-FHRLVKP-RKPVSNFTSNF 433 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT++ L+ + + +F F + A +AHNA FD FI ++R+ + + Sbjct: 434 TGITNQMLEVEKPIEEVLPQFLSFI--EGAVLVAHNAIFDYRFIREWVRRVYNEHFE-QT 490 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 IDT+++++ L + + + + H H A D+++ + V++K++ Sbjct: 491 YIDTVALSKSLLTLKSYGLAKVVEELKLGSFEH---HRAHEDANITALVFLKLIEMAKSQ 547 Query: 182 NFGFKTNEDRFFK 194 N ++ ++ K Sbjct: 548 NVEMLSDLEKLKK 560 >gi|171056716|ref|YP_001789065.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6] gi|170774161|gb|ACB32300.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6] Length = 210 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 8/204 (3%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTG+ + R EIGAV + + +Q + +G P +L GI++ Sbjct: 4 IAVIDFETTGMTPSQGARATEIGAVLVRGGEIVGQ-YQSLMY-SGVHIPPFIEQLTGISN 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L+D P + E F + +AHNA FD GF AE +R +P T+ Sbjct: 62 AMLRDAPPAEQVMREVAAF--TRGCPMVAHNAAFDRGFWLAERERAGCEPDLAQEFACTV 119 Query: 128 SIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++RR + + + L +L +G+ + R H AL D+ + + +++ +Q + + Sbjct: 120 LLSRRLNTEAPNHKLGTLASWFGLPNNGR-AHRALADALTTAHLLVRLQDLVAQ-RYADQ 177 Query: 187 TNEDRFFKEEKKTVPNISLLKRDK 210 E + + D+ Sbjct: 178 LQGRPVRHELLAALQRAPKTQLDR 201 >gi|13959345|sp|Q9CDT7|DPO3_LACLA RecName: Full=DNA polymerase III polC-type; Short=PolIII Length = 1638 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 8/183 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G + S +L GITD+ Sbjct: 596 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDD 653 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + ++F F + +AHNA FDVGF+N R P+ ++DTL Sbjct: 654 HVKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSRNGL-PIITQPVVDTLE 710 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR +P R L L K++ I + H H A D+ + + N G+ + Sbjct: 711 FARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDAEATGRLLFVFLEELRTRNTGWTS 768 Query: 188 NED 190 + Sbjct: 769 LLE 771 >gi|255068237|ref|ZP_05320092.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sicca ATCC 29256] gi|255047507|gb|EET42971.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sicca ATCC 29256] Length = 449 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 10/160 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+E+TG + DR+ EI + + ++ + P G+ ++L GIT+E + Sbjct: 2 VVDLESTGGNLYQDRVTEIAFLRFENGR--VEHYEQLINP-GKPIPEFVVQLTGITNEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P+F I + + + +AHN++FD F+ E R D P+ + T+ ++ Sbjct: 59 AQAPAFDQIAPDILPLL--RGSLIVAHNSRFDYTFLRHEFYRAGIDFAAPA--LCTVQLS 114 Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 RR +P +++L+S+ R GI R H AL D L+D Sbjct: 115 RRLYPQFYKHNLDSIISRMGIQTDDR--HRALADVLALAD 152 >gi|15674106|ref|NP_268281.1| DNA polymerase III PolC [Lactococcus lactis subsp. lactis Il1403] gi|12725180|gb|AAK06222.1|AE006440_8 DNA polymerase III, alpha chain [Lactococcus lactis subsp. lactis Il1403] Length = 1658 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 8/183 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G + S +L GITD+ Sbjct: 616 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDD 673 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + ++F F + +AHNA FDVGF+N R P+ ++DTL Sbjct: 674 HVKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSRNGL-PIITQPVVDTLE 730 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR +P R L L K++ I + H H A D+ + + N G+ + Sbjct: 731 FARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDAEATGRLLFVFLEELRTRNTGWTS 788 Query: 188 NED 190 + Sbjct: 789 LLE 791 >gi|139474447|ref|YP_001129163.1| DNA polymerase III PolC [Streptococcus pyogenes str. Manfredo] gi|166217453|sp|A2RGI3|DPO3_STRPG RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|134272694|emb|CAM30965.1| DNA polymerase III PolC-type [Streptococcus pyogenes str. Manfredo] Length = 1465 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L+ ++ F DF +++ +AHNA FDVGF+NA +R + P Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLRDARE 592 >gi|42527504|ref|NP_972602.1| DNA polymerase III domain-containing protein [Treponema denticola ATCC 35405] gi|41818089|gb|AAS12513.1| DNA polymerase III domain protein [Treponema denticola ATCC 35405] gi|325473756|gb|EGC76945.1| DNA polymerase III domain-containing protein [Treponema denticola F0402] Length = 217 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 8/164 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 FD ETTG ++K +R++EIG V+ R + V + P + PEA K++ ITDE Sbjct: 16 FTAFDTETTGTEAKAERVVEIGCVKFDIRGVIAR-YNVLIDPE-KPMPPEAGKVNQITDE 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L +P F+ + +F DF +N +AHNA FD+ FIN EL+R K L +++ DTL+ Sbjct: 74 MLAGQPKFAEVLPDFLDFI--RNTVLVAHNASFDINFINCELERCGKTKL-TNKVFDTLT 130 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 AR P L +L ++G+ + H A D+ + + + Sbjct: 131 FARETLPGLQSYALQNLATQFGVQAVN--AHRAEDDARVCMEFF 172 >gi|56475526|ref|YP_157115.1| exonuclease [Aromatoleum aromaticum EbN1] gi|56311569|emb|CAI06214.1| conserved hypothetical protein, possibly exonuclease [Aromatoleum aromaticum EbN1] Length = 642 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 12/204 (5%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61 +++ VFD ETTGLD K D II+IGA +++ +F+ + P R SPE++K Sbjct: 447 LSELTYTVFDTETTGLDPSKGDEIIQIGATRIVNSKLLRQESFEQLIDPE-RGVSPESVK 505 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT + L +P+ + + F F Q+ IAHNA FD+ F+ + P Sbjct: 506 IHGITPDMLAGQPTIARVLPAFHAF--AQDTVLIAHNAAFDMRFLQLKETMTGLRFDQP- 562 Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL ++ HP + L ++ +R +TI R H AL D+ + ++V +K++ ++ Sbjct: 563 -VLDTLLLSAVVHPNQESHRLEAIAERLNLTIIGR--HTALGDAIVTAEVLLKLIPLLAE 619 Query: 181 INFGFKTNEDRFFKEEKKTVPNIS 204 G T + EK + Sbjct: 620 --KGIHTLGEARRAAEKSYYARVK 641 >gi|322411039|gb|EFY01947.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1465 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L+ ++ F DF +++ +AHNA FDVGF+NA +R + P Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592 >gi|315303836|ref|ZP_07874324.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria ivanovii FSL F6-596] gi|313627797|gb|EFR96442.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria ivanovii FSL F6-596] Length = 928 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + ++DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASRDDRIIQFAAC-FVESGKRLETYATFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + ++D P F + + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVRDAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMNRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L +G + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161 >gi|313891131|ref|ZP_07824750.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pseudoporcinus SPIN 20026] gi|313120494|gb|EFR43614.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pseudoporcinus SPIN 20026] Length = 1466 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 8/171 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 421 MDLHEATYVVFDVETTGLSAINNDLIQIAASKMYKGNIIEQ-FDEFINP-GHPLSTFTTE 478 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD L + F DF QN +AHNA FDVGF+NA +R PL Sbjct: 479 LTGITDNHLIGAKPILKVLEAFQDFC--QNTILVAHNASFDVGFMNANYERHQL-PLINQ 535 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +IDTL AR +P R+ L L KR+ +++ H H A D+ + Sbjct: 536 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLL 584 >gi|54302908|ref|YP_132901.1| putative DNA polymerase III [Photobacterium profundum SS9] gi|46916332|emb|CAG23101.1| putative DNA polymerase III [Photobacterium profundum SS9] Length = 214 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 9/174 (5%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N IV D ETTGL + DR IEIGAV + + +R FQ + P G + S Sbjct: 11 NANTVIVLDFETTGLSPTQGDRAIEIGAVLMENGEVVDR-FQKLMNP-GFRVSSFIESYT 68 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT+ L+ + +F DF + N +AHNA FD F++AEL IN+ Sbjct: 69 GITNNMLRTAAPCDEVMDQFTDFIGDYN--LVAHNASFDKRFLDAELDIINRSY--GGEF 124 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ IARR + + + L SL I H AL DS + + ++++M+ Sbjct: 125 ACSMLIARRLYQNAPNHKLGSLVAYKNID-HDGVFHRALADSEMTAKLWLQMLE 177 >gi|319651314|ref|ZP_08005444.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp. 2_A_57_CT2] gi|317397094|gb|EFV77802.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp. 2_A_57_CT2] Length = 933 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 9/164 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + +V D+ETTG K D+II+ AV + + T + + P + P +L G++ Sbjct: 4 KYVVVDLETTGNAPKKGDKIIQFAAVVIENGKIT-EEYSSLVNPE-QSIPPFIEELTGLS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE +++ P FS I + + A ++AHN FD+ F+ EL + ++DT Sbjct: 62 DEMVENAPLFSEIAPKVLTLL--EGAYFVAHNVLFDLSFLQEELIEAGYNGF-YGPVLDT 118 Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + +AR P++ L+ L R G ++H H A D+++ ++ Sbjct: 119 VEMARILFPTADSFKLSDLALREG--LNHERPHQADSDAYVTAE 160 >gi|281492785|ref|YP_003354765.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis KF147] gi|281376437|gb|ADA65923.1| DNA polymerase III, alpha subunit [Lactococcus lactis subsp. lactis KF147] Length = 1638 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 8/183 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G + S +L GITD+ Sbjct: 596 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDD 653 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + ++F F + +AHNA FDVGF+N R P+ ++DTL Sbjct: 654 HVKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSRNGL-PIITQPVVDTLE 710 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR +P R L L K++ I + H H A D+ + + N G+ + Sbjct: 711 FARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDAEATGRLLFVFLEELRTRNTGWTS 768 Query: 188 NED 190 + Sbjct: 769 LLE 771 >gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] Length = 375 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 10/170 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + + D+ETTG RI EIG VE+ T+ + P G+ P +L GI Sbjct: 12 EQPLVFVDLETTGGTPAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQPIPPFIQQLTGI 68 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D ++D PSF+ + ++ + ++AHNA FD GF+ AE +R ++ Sbjct: 69 SDAMVRDAPSFAELAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGFAFNPD--VLC 124 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ ++R P SR+ L++L R+G+ + ++H AL D+ LL + + Sbjct: 125 TVRLSRALFPRESRHGLDALIARHGLVPA--ARHRALADADLLWQFWRHL 172 >gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] Length = 958 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 9/160 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG ++DR+IE+ AV D + F + P G L GI Sbjct: 6 FVAIDVETTGTSPEHDRLIEVAAVRFEDGREIG-CFSRLIDP-GCPVPQRIQHLTGIHPA 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L KP + + F + +AHNA FDV F+ A R + P+ DT Sbjct: 64 MLAGKPRIEEVVPDLASFLG--DLPLVAHNAPFDVAFLQAAFARAGRSL--PNWSYDTAE 119 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLL 167 +AR P +RN L +L + G+ + H H A D+ Sbjct: 120 LARVALPLARNHRLATLAELLGLPLEHH--HRAEDDARAC 157 >gi|284991755|ref|YP_003410309.1| DNA polymerase III subunit epsilon [Geodermatophilus obscurus DSM 43160] gi|284065000|gb|ADB75938.1| DNA polymerase III, epsilon subunit [Geodermatophilus obscurus DSM 43160] Length = 609 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 94/234 (40%), Gaps = 29/234 (12%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 ++ +V D+ETTG K+ I EIGAV++ FQ + P G + P L GI Sbjct: 36 EVTFVVVDLETTGGSPKDSAITEIGAVKVRGGEVLGE-FQTLVDP-GCEIPPYISVLTGI 93 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + P ++ F +F + A +AHNA FD+GF+ A N P + +D Sbjct: 94 TSTMVAAAPRIGAVLPHFLEF--ARGAVLVAHNAPFDLGFLKAACA-ANGIPWPATASVD 150 Query: 126 TLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 T +ARR L +L + S H AL D+ DV + + Sbjct: 151 TAVLARRLLSRDEVPNCKLATLAPYF--RTSTEPCHRALADARATVDVLHGLFERLGPL- 207 Query: 183 FGFKTNED---------------RFFKEEKKTVPNISLLK--RDKPLFTRITKE 219 G + E+ R + P + L + RD+PL+ + + Sbjct: 208 -GITSLEELTGLTRQVDPDRLRKRHLADAVPHGPGVYLFRGPRDEPLYVGTSTD 260 >gi|30263558|ref|NP_845935.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames] gi|47528957|ref|YP_020306.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames Ancestor'] gi|49186408|ref|YP_029660.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne] gi|65320888|ref|ZP_00393847.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Bacillus anthracis str. A2012] gi|165871011|ref|ZP_02215662.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0488] gi|167636474|ref|ZP_02394772.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0442] gi|167640607|ref|ZP_02398869.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0193] gi|170688408|ref|ZP_02879616.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0465] gi|170708125|ref|ZP_02898572.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0389] gi|177652488|ref|ZP_02934955.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0174] gi|190565123|ref|ZP_03018044.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis Tsiankovskii-I] gi|229603113|ref|YP_002867802.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0248] gi|254686178|ref|ZP_05150037.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. CNEVA-9066] gi|254726056|ref|ZP_05187838.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A1055] gi|254738651|ref|ZP_05196354.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Western North America USA6153] gi|254744791|ref|ZP_05202469.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Kruger B] gi|254752968|ref|ZP_05205004.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum] gi|254759240|ref|ZP_05211266.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Australia 94] gi|30258193|gb|AAP27421.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. Ames] gi|47504105|gb|AAT32781.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49180335|gb|AAT55711.1| DNA polymerase III, epsilon subunit, putative [Bacillus anthracis str. Sterne] gi|164713222|gb|EDR18748.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0488] gi|167511475|gb|EDR86859.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0193] gi|167528133|gb|EDR90925.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0442] gi|170126933|gb|EDS95813.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0389] gi|170667578|gb|EDT18333.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0465] gi|172082162|gb|EDT67229.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0174] gi|190564440|gb|EDV18404.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis Tsiankovskii-I] gi|229267521|gb|ACQ49158.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0248] Length = 315 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R + L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRIMSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|326800820|ref|YP_004318639.1| DNA polymerase III subunit epsilon [Sphingobacterium sp. 21] gi|326551584|gb|ADZ79969.1| DNA polymerase III, epsilon subunit [Sphingobacterium sp. 21] Length = 463 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 9/173 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + DIETTG + I EI A+ + D + ++ + P L GI+ Sbjct: 1 MEYAIVDIETTGGHAAGHGITEI-AICIHDGAGICHRYETLVNPQAH-IPLHISALTGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + D P+F+ I + + + ++AHN FD FI L + + T Sbjct: 59 NEMVADAPTFAEIAATVYQLL--EGRIFVAHNVNFDYSFIKHHLAFCGYSW--NAPKLCT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + ++R+ P + L LC++ I+I++R H A D+ ++ ++ G Sbjct: 115 VRLSRKVLPGFASYSLGKLCQQLNISITNR--HRAGGDATATGILFSLLLEKG 165 >gi|47458892|ref|YP_015754.1| DNA polymerase III PolC [Mycoplasma mobile 163K] gi|47458220|gb|AAT27543.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K] Length = 1433 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 6/164 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL D IIE GA ++L+ + T Q F+ PN ++ S + + GI ++ Sbjct: 400 YVVFDLETTGLSPIFDDIIEFGAQKILNGKVID-TLQFFVKPN-KEISEKITLITGIKNQ 457 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ S + +F + +AHNA FD+ FIN ++++ N +IIDTL Sbjct: 458 DVENAISEKEALKKILEFMGDH--TVVAHNATFDMNFINEKIEKYNFQE-SNLQIIDTLV 514 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +++ P + L +L R GI + H A D+ +L+ V+ Sbjct: 515 VSKIIEPEAKKFSLENLASRSGIIYNSTEAHRADYDADVLAKVW 558 >gi|149183101|ref|ZP_01861552.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. SG-1] gi|148849178|gb|EDL63377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. SG-1] Length = 933 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 9/178 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + +V D+ETTG K D+II++ A+ ++ ++ F+ P G +L GI Sbjct: 5 KIVVVDLETTGNSPKKGDKIIQLAAM-VVQGGAVVDSYTTFVNP-GITIPSFIEELTGIH 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D +KD P FS I + + + A + AHN +FD+GF+ AEL+ +P DT Sbjct: 63 DGMVKDAPEFSEIAPKVLELLD--GAVFCAHNVQFDLGFLQAELEEAGYNPFS-GPSFDT 119 Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + +A+ P++ L L R+ +++H H A D+ + +++ I + +++ Sbjct: 120 VELAKITLPTADSYKLTELSDRF--SLNHSRPHQADSDALVTAELLIHFIEKLAKLPL 175 >gi|148245142|ref|YP_001219835.1| DNA polymerase III subunit epsilon [Clostridium kluyveri DSM 555] gi|146337022|gb|ABQ23633.1| DNA polymerase III, epsilon subunit related exonuclease [Clostridium kluyveri DSM 555] Length = 441 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL+ D IIEI A + + + T+ + P P ++ I ++ Sbjct: 131 FVVVDLETTGLEPTRDYIIEIAAAKYENNEIID-TYTTLVNPEVF-IPPNITNINHIDND 188 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + F +F + +AHNA FD+ F + IIDTL Sbjct: 189 MVKDCPEIKEVLPGFMNFIGQ--LPLVAHNAPFDIKF--LNANLALLGLYLNNPIIDTLP 244 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I+R+ + L ++ + I + H AL D ++ +Y++ Sbjct: 245 ISRKLFSEIENHKLGTIKEYLNIDVQD--SHRALPDCYVCGQIYLE 288 >gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448] gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448] Length = 1469 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 7/200 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +K++ ++FD+ETTGL + + IIE GAV L + + + Q F+ P G K P K+ G Sbjct: 407 DKLKFVIFDLETTGLSAFYNEIIEFGAVVLQNGIEIEKH-QFFIKPTG-KIPPAITKITG 464 Query: 65 ITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I+ + + + S+ + +++ +AHNA FD F+ ++ K L + I Sbjct: 465 ISQKMIDETAISWEIALEKITKII--KDSVLVAHNAAFDFSFLEQFFRQKAKKSL-KNPI 521 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL ++R +P+ + + L ++ KRY I + H A D+ +L+ ++ + N Sbjct: 522 IDTLEVSRFLNPNEKSHSLKNVAKRYEIEYAEEIAHRADYDAKILTTIWKNFLAELKSQN 581 Query: 183 FGFKTNEDRFFKEEKKTVPN 202 T+ + P Sbjct: 582 INDLTSLSEIKNSIFELRPE 601 >gi|219684048|ref|YP_002470430.1| hypothetical protein CKR_P20 [Clostridium kluyveri NBRC 12016] gi|219570556|dbj|BAH08539.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 444 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL+ D IIEI A + + + T+ + P P ++ I ++ Sbjct: 134 FVVVDLETTGLEPTRDYIIEIAAAKYENNEIID-TYTTLVNPEVF-IPPNITNINHIDND 191 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + F +F + +AHNA FD+ F + IIDTL Sbjct: 192 MVKDCPEIKEVLPGFMNFIGQ--LPLVAHNAPFDIKF--LNANLALLGLYLNNPIIDTLP 247 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I+R+ + L ++ + I + H AL D ++ +Y++ Sbjct: 248 ISRKLFSEIENHKLGTIKEYLNIDVQD--SHRALPDCYVCGQIYLE 291 >gi|289640817|ref|ZP_06472988.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca glomerata] gi|289509393|gb|EFD30321.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca glomerata] Length = 629 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 29/244 (11%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +V D+ETTG + + I EIGAV++ + + P+ P L Sbjct: 88 LREVTFVVVDLETTGSRAADSEITEIGAVKIR-GGEVLAELATLVRPD-APIPPFISVLT 145 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD + P + F +F + +AHNA FD+GF+ R P+ Sbjct: 146 GITDAMVATAPRIDAALPTFLEF--AHGSVLVAHNAPFDLGFLREACVRCGH-PVPDWEH 202 Query: 124 IDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL IAR+ + L SL + + H AL D+ V + Sbjct: 203 LDTLRIARQVLGRDETPDHKLASLARLF--PADAGPCHRALADARATVAVLHGL--FERL 258 Query: 181 INFGFKTNED---------------RFFKEEKKTVPNISLLK--RDKPLFTRITKEELDE 223 FG T E+ R ++ T P + + + D+PL+ ++ Sbjct: 259 GGFGVTTLEELHGFSRKVSPARRRKRHLADDLPTGPGVYIFRDSTDRPLYVGTSRSVRAR 318 Query: 224 HDKT 227 Sbjct: 319 VRSY 322 >gi|88801444|ref|ZP_01116972.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P] gi|88782102|gb|EAR13279.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P] Length = 462 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 13/198 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V DIETTG K +I EI A+ + D K F + P + L GIT Sbjct: 1 MLYAVVDIETTGNGPKGQKITEISAL-IFDGKKIVDEFTSLVNPE-QNIPAFITSLTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +++ P F I + + +N ++AHN FD I AE + + D + + T Sbjct: 59 NAMVRNAPRFFEIAKKVAEI--TENTIFVAHNVNFDYNIIQAEFKSLGFDF--KRKKLCT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + + R+ P L ++C I I+ R H A D+ +++ +++ + + F Sbjct: 115 IRLTRKIIPGLPSYSLGNICTGENIPINGR--HRAKGDAEATAELLRRLI----ERDENF 168 Query: 186 KTNEDRFFKEEKKTVPNI 203 N K + T+P + Sbjct: 169 TINSFLNPKSRQATLPPL 186 >gi|119898701|ref|YP_933914.1| DNA polymerase III epsilon subunit-like protein [Azoarcus sp. BH72] gi|119671114|emb|CAL95027.1| DNA polymerase III epsilon chain-like protein [Azoarcus sp. BH72] Length = 734 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 101/202 (50%), Gaps = 12/202 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLH 63 ++ VFD ETTGL+ + D II+IGAV +L+ F+ + P R E+ ++H Sbjct: 541 ELTYTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDP-CRPLPEESARVH 599 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + L +P ++ F F + +AHNA FD+ F+ + P + Sbjct: 600 GITADMLAGQPVIEAVLPSFHAF--AADTVLVAHNAAFDMRFLQLKEDLTGLRFDQP--V 655 Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +DTL ++ HP+ + L ++ +R GIT+ R H AL D+ + ++V++K++ ++ Sbjct: 656 LDTLLLSAVIHPNQDSHRLEAIAERLGITVVGR--HTALGDAMVTAEVFLKLVPLLAE-- 711 Query: 183 FGFKTNEDRFFKEEKKTVPNIS 204 G +T + EK I Sbjct: 712 KGIRTLREAREAAEKSYYARIK 733 >gi|159039058|ref|YP_001538311.1| hypothetical protein Sare_3518 [Salinispora arenicola CNS-205] gi|157917893|gb|ABV99320.1| DNA polymerase III, epsilon subunit [Salinispora arenicola CNS-205] Length = 585 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 63/253 (24%), Positives = 101/253 (39%), Gaps = 24/253 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I EIGAV++ + + P G P L GIT Sbjct: 32 FVVVDLETTGGAPDGGGITEIGAVKVRGGEQLG-VLATLVNP-GVPVPPFVTVLTGITQA 89 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L PS + + F +F + +A +AHNA +DVGF+ A +P RI+DT + Sbjct: 90 MLLPAPSIAQVLPSFLEFLSA-DAVLVAHNAPYDVGFLKAACAAHGHRWPNP-RILDTAA 147 Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +ARR L +L + S + H AL D+ DV ++ +GG +++ Sbjct: 148 LARRVLSRDEVPNRRLGTLAAYF--RTSTQPTHRALDDAKATVDVLHGLIARLGGHRVHT 205 Query: 184 GFKTNE-----------DRFFKEEKKTVPNISLLKR--DKPLFTRITKEELDEHDKTIQT 230 + E R E P + L + D+PL+ + + Sbjct: 206 IGEAIEFARAVTPTQRRKRHLAEGLPRTPGVYLFRGADDRPLYVGTSVDIATRVRSYFTA 265 Query: 231 LGKNAIWDRYISS 243 K A +++ Sbjct: 266 AEKRARISEMLAA 278 >gi|299821667|ref|ZP_07053555.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601] gi|299817332|gb|EFI84568.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601] Length = 929 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 10/171 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M RK K R +V D+ETTG + ++DRII+ A L++ SK T+ F+ P R+ P Sbjct: 1 MKRKEK-RYLVVDLETTGNQANRHDRIIQFAA-TLVEGSKRLETYSTFINPE-REIPPFI 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L GI D P F+ + + ++ ++AHN FD F+ E+QR PL Sbjct: 58 QQLTGIKPSDCYDAPIFTDVAPIIQNLL--EDCIFVAHNVSFDWTFLAREMQRAGY-PLP 114 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++ +DT+ +AR +P L L + + H H A D+ + +D Sbjct: 115 KTKKLDTVELARIIYPGIDSYKLQDLSDEFK--LGHDRPHQADSDAEVTAD 163 >gi|227813558|ref|YP_002813567.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. CDC 684] gi|227004983|gb|ACP14726.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. CDC 684] Length = 315 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R + L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPK-RPIPDRIMSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|78065586|ref|YP_368355.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383] gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383] Length = 378 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 10/169 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ + D+ETTG RI EIG VE+ T+ + P G+ P +L Sbjct: 11 ASEQPLVFVDLETTGGSPAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQPIPPFIQQLT 67 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+DE ++D PSF+S+ ++ + ++AHNA FD GF+ AE +R + Sbjct: 68 GISDEMVRDAPSFASLAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGFAFNPD--V 123 Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + T+ ++R P R+ L++L +R+G+ + ++H AL D+ LL + Sbjct: 124 LCTVRLSRALFPRETRHGLDALIERHGLVPA--ARHRALADADLLLQFW 170 >gi|254510913|ref|ZP_05122980.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacteraceae bacterium KLH11] gi|221534624|gb|EEE37612.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacteraceae bacterium KLH11] Length = 470 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 7/169 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL D I++IGAV ++ + + P G + ++H I D Sbjct: 278 FVVFDTETTGLLPHKDEIVQIGAVRVIKGRIVEGEQLDMLVDP-GIPIPAASTRVHKIND 336 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P + F F ++A +AHNA FD+ F++ +R+ + P ++DT+ Sbjct: 337 AMVLGAPDIAKAGLIFHQF--SRDAVIVAHNAPFDMAFLHRHAKRMGVEWTHP--VLDTV 392 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ +S + L+++C R G+TI +H AL D+ ++V ++M+ Sbjct: 393 LLSAVLFGASETHTLDAVCARLGVTIPATLRHTALGDAVATAEVLVRML 441 >gi|258653407|ref|YP_003202563.1| hypothetical protein Namu_3243 [Nakamurella multipartita DSM 44233] gi|258556632|gb|ACV79574.1| DNA polymerase III, epsilon subunit [Nakamurella multipartita DSM 44233] Length = 613 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 13/208 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ +V D+ETTG + I EIGAV++ F + P GR P+ L Sbjct: 44 LREVTFVVVDLETTGGSPATEAITEIGAVKVRGGQVLGE-FATLVDP-GRTIPPQITMLT 101 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT+ + D P SS+ F +F + + +AHNA+FDVGF+ A R + P + Sbjct: 102 GITNAMVYDAPRISSVLPAFLEF--ARGSVLVAHNARFDVGFLRAACAR-QQVPWPGPAV 158 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +DT+ +AR+ P + + + R H AL D+ DV + + Sbjct: 159 VDTVRLARKVLPRAEAPSVRLSALAALLGARTRPDHRALTDARATVDVLHALFERLGSLG 218 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDK 210 E + +++ +R K Sbjct: 219 VH-------SLAELQDASRDVAPQRRRK 239 >gi|291278558|ref|YP_003495393.1| hypothetical protein DEFDS_0125 [Deferribacter desulfuricans SSM1] gi|290753260|dbj|BAI79637.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 207 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 98/178 (55%), Gaps = 9/178 (5%) Query: 3 RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEA 59 + N++ VFDIE+TG++ DRI+EIGAV++ + F V + P G ++ Sbjct: 12 KINEVEYCVFDIESTGINPFDGDRIVEIGAVKIKPGFVIDYKNKFHVLVNP-GIPIPEDS 70 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGITDE + + P + F +F + +AHNA+ D+ F+ + D Sbjct: 71 QKIHGITDEDVANAPDECEAYYNFIEF--AKGCIPVAHNARKDMAFLRRISKEYLIDEPF 128 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITI-SHRSKHGALLDSHLLSDVYIKMM 175 ++DTL+++++ + SR ++L++L ++Y + I S+ +H AL D+ S ++ MM Sbjct: 129 EF-VLDTLALSKKVNVLSRYHNLDALIEKYNVRIKSNYKRHRALYDAEATSVIFKIMM 185 >gi|222152446|ref|YP_002561621.1| DNA polymerase III PolC [Streptococcus uberis 0140J] gi|222113257|emb|CAR40776.1| DNA polymerase III PolC-type [Streptococcus uberis 0140J] Length = 1465 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 15/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMYKGNIIEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD L + EF F + +AHNA FD+GF+NA +R P Sbjct: 478 LTGITDNHLIGAKPLLQVLEEFQAFC--HDTVLVAHNASFDIGFMNANYERNGL-PQITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLLFIFLKEARE 592 Query: 181 -------INFGFKTNEDRFFKEEKKTVPNISL 205 ++ K + +K+ + I + Sbjct: 593 KHGVTDLLDLNIKLVAEDSYKKARIKHATIYV 624 >gi|269956792|ref|YP_003326581.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM 15894] gi|269305473|gb|ACZ31023.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica DSM 15894] Length = 584 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 90/224 (40%), Gaps = 23/224 (10%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ +V D+ETTG + + I EIGAV++ FQ + P GR+ + Sbjct: 26 TPLREVTFVVVDLETTGTRTTDSGITEIGAVKVRGGEVLGE-FQSLVNP-GREVPAFVAR 83 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT + PS + F ++ + +AHNA FDVGF+ A + P Sbjct: 84 LTGITTAMVSTAPSIDLVLPSFLEW--AHDCVLVAHNAPFDVGFLKAAAAGLGY-PWPGF 140 Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--- 175 ++DT+ +ARR P + L +L + ++ H AL D+ DV ++ Sbjct: 141 PVVDTVPLARRVVPKDEAPNHKLATLAHLFRARVTPE--HRALADARATVDVLHGLLDRL 198 Query: 176 -VGGSQINFGFKTNED---------RFFKEEKKTVPNISLLKRD 209 G Q T D R + P + L K Sbjct: 199 GAMGVQHLEDLATAADPVPPDVRKKRHLADGLPEAPGVYLFKGP 242 >gi|257784354|ref|YP_003179571.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] gi|257472861|gb|ACV50980.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] Length = 342 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGLD IIEI A++++D T F + P R+ A ++ IT+ Sbjct: 78 YVVVDLETTGLDVHYCEIIEIAALKVVDGKIT-EEFSSLIHPP-REIPSGATAINHITNH 135 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTL 127 +K+ P+ + +F F + I HN+ ++D + R +D L DT Sbjct: 136 MVKNAPTLDKVIPQFDTFV--KGFPLIGHNSLRYDAIVLEENFFR--RDFLCDYVWYDTY 191 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR+ L ++ KR + H H AL D ++ +Y KM Sbjct: 192 KLARQIL-EPPYKLINIAKRLNVK-QHGKAHRALADCYMTYGIYEKM 236 >gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010] gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010] Length = 488 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D ETTG + DR+ EI +E+ D R +Q L P R P +L GITD Sbjct: 12 VILDCETTGGRASRDRLTEIALIEVEDGHVVKR-WQTLLNP-LRPIPPWITRLTGITDAT 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+F I E F +AHNA+FD F+ QR ++ + ++ + Sbjct: 70 VADAPTFDEIADEL--FACLDGKVIVAHNARFDYSFLRQSFQRCGYTL--GNKTLCSVKL 125 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R+ P R + L+ + +R G+TI +R H A+ D+ +L + + Sbjct: 126 SRQLFPEHRSHGLDRIIERLGLTIDNR--HRAMADTEVLLAFFEHI 169 >gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J] gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J] Length = 1468 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 7/200 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +K++ ++FD+ETTGL + + I+E GAV L + + + Q F+ P G K P K+ G Sbjct: 406 DKLKFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKH-QFFIKPTG-KIPPAITKITG 463 Query: 65 ITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I+ + + + S+ + +++ +AHNA FD F+ ++ K L + I Sbjct: 464 ISQKMIDETAISWEIALEKITKII--KDSVLVAHNAAFDFSFLEQFFRQKAKKSL-KNPI 520 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL ++R +P+ + + L ++ KRY I H A D+ +L+ ++ + N Sbjct: 521 IDTLEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLAELKSQN 580 Query: 183 FGFKTNEDRFFKEEKKTVPN 202 T+ + P Sbjct: 581 INDLTSLSEIKNSIFELRPE 600 >gi|71911485|ref|YP_283035.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS5005] gi|71854267|gb|AAZ52290.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005] Length = 1465 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L+ ++ F DF +++ +AHNA FDVGF+NA +R + P Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592 >gi|91775906|ref|YP_545662.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] gi|91709893|gb|ABE49821.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus KT] Length = 462 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 86/167 (51%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG DRI EIG + + + R +Q + P SP + GI++ Sbjct: 5 YVLLDLETTGATPVTDRITEIGLIRYENGIEVKR-WQTLVNPEMH-ISPFITSITGISNA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P F + +E A AHN +FD GF+ E +R+ D ++ T+ Sbjct: 63 MVKDAPLFKDVANELLSHL--HGAVLCAHNVRFDYGFLKNEFRRL--DITLRQNVLCTVK 118 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++RR +P + + L+++ R+GI + ++H A+ D ++++ ++ + Sbjct: 119 LSRRLYPEYKSHGLDAIIARHGIACA--ARHRAMGDVEVMAE-FLHI 162 >gi|21911223|ref|NP_665491.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS315] gi|28896601|ref|NP_802951.1| DNA polymerase III PolC [Streptococcus pyogenes SSI-1] gi|25452927|sp|Q8K5S8|DPO3_STRP3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|21905436|gb|AAM80294.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS315] gi|28811855|dbj|BAC64784.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes SSI-1] Length = 1465 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L+ ++ F DF +++ +AHNA FDVGF+NA +R + P Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592 >gi|94995162|ref|YP_603260.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10750] gi|123382133|sp|Q1J4M0|DPO3_STRPF RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|94548670|gb|ABF38716.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750] Length = 1465 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L+ ++ F DF +++ +AHNA FDVGF+NA +R + P Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592 >gi|15675759|ref|NP_269933.1| DNA polymerase III PolC [Streptococcus pyogenes M1 GAS] gi|81175278|sp|P0C0B8|DPO3_STRP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|13622981|gb|AAK34654.1| DNA polymerase III (alpha subunit) [Streptococcus pyogenes M1 GAS] Length = 1465 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L+ ++ F DF +++ +AHNA FDVGF+NA +R + P Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592 >gi|225419839|ref|ZP_03762142.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme DSM 15981] gi|225041521|gb|EEG51767.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme DSM 15981] Length = 255 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 62/238 (26%), Positives = 99/238 (41%), Gaps = 16/238 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGL+ + D+I EI A+ ++D + R F + P GR ++L GITD Sbjct: 16 YVAIDIETTGLEPRLDKITEIAALRVVDGAVEGR-FVTLVNP-GRPLGERIVELTGITDG 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+ + F + + HN FD F+ D IDTL+ Sbjct: 74 MLAGAPAIGDVIGPLVRFCG--DLPLLGHNILFDYSFLKRAAVNQGLDF--QREGIDTLN 129 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + R P + +L++ C Y I H A D+ +Y K++ G + T Sbjct: 130 LCRAFMPGEHKKNLSAACAFYCIE--QVEAHRAEADALSAHLLYQKLLEGRGEGREELFT 187 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA---IWDRYIS 242 + +K +K+ + KR K + K + I TL +N + DR +S Sbjct: 188 PKSLIYKAKKEQ----PVTKRQKEYLQDLIKCHRIDVTVQIDTLSRNEASRMIDRILS 241 >gi|50915026|ref|YP_060998.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10394] gi|73919253|sp|Q5X9U8|DPO3_STRP6 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|50904100|gb|AAT87815.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394] Length = 1465 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + + F F+ P G S + Sbjct: 420 MDLHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD+ L+ ++ F DF +++ +AHNA FDVGF+NA +R + P Sbjct: 478 LTGITDKHLQGAKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592 >gi|229179896|ref|ZP_04307242.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W] gi|228603577|gb|EEK61052.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W] Length = 315 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RPIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + +++IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-LEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|332668025|ref|YP_004450813.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM 1100] gi|332336839|gb|AEE53940.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis DSM 1100] Length = 463 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 9/171 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K + + D+ETTG + DRIIEI V D ++ +++ + P L GI Sbjct: 2 KKKYAIIDVETTGGKASRDRIIEIAVVIH-DGNQILESWESLINPET-LIPWNITILTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+ + + P F + + + + A ++AHNA+FD FI E +R+ + + Sbjct: 60 NDQMVANAPKFYEVARKIVEL--TEGAIFVAHNARFDYSFIGEEFKRLGYTY--TRKQLC 115 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 TL +AR+ P L++L + + I ++++H A+ D V ++ Sbjct: 116 TLRLARQTLPGLYAYGLDALSRHFNI--HNQARHRAMGDVQATIKVLEYIL 164 >gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] Length = 1428 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 9/188 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ETTGL+++ +IEI AV++ + + + P G SP+ +L GIT + Sbjct: 416 FVVFDTETTGLNAREHTLIEIAAVKVRGGELVD-HYTSLIDP-GVPISPKIQELTGITSD 473 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K +P S + F F A +AHNA+FD+GF+ + +++ + P D ++DTL+ Sbjct: 474 MVKGQPGLSEVLEAFRKF--AAGAVLVAHNAEFDMGFLQSAARKLGQPPWD-HPVLDTLA 530 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR +P RN L +L +++ + + + H A D+ + V++ ++ Sbjct: 531 LARVLYPRERNHRLKTLTQKFNVELVNH--HRAAADAEATAKVFLHLLREAEARGAH-HL 587 Query: 188 NEDRFFKE 195 +E E Sbjct: 588 DECNALGE 595 >gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232] gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232] Length = 1469 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 7/200 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +K++ ++FD+ETTGL + + I+E GAV L + + + Q F+ P G K P K+ G Sbjct: 407 DKLKFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKH-QFFIKPTG-KIPPAITKITG 464 Query: 65 ITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I+ + + + S+ + +++ +AHNA FD F+ ++ K L + I Sbjct: 465 ISQKMIDETAISWEIALEKITKII--KDSVLVAHNAAFDFSFLEQFFRQKAKKSL-KNPI 521 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL ++R +P+ + + L ++ KRY I H A D+ +L+ ++ + N Sbjct: 522 IDTLEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLAELKSQN 581 Query: 183 FGFKTNEDRFFKEEKKTVPN 202 T+ + P Sbjct: 582 INDLTSLSEIKNSIFELRPE 601 >gi|226360268|ref|YP_002778046.1| hypothetical protein ROP_08540 [Rhodococcus opacus B4] gi|226238753|dbj|BAH49101.1| putative DNA polymerase III epsilon subunit [Rhodococcus opacus B4] Length = 588 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 86/212 (40%), Gaps = 17/212 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +V D+ETTG D I EIGAV++ + P GR P ++ Sbjct: 17 TPLRDTTFVVVDLETTGARPGEDAITEIGAVKIRGGEVIAE-MATLVDP-GRSIPPHIVE 74 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + GIT + D P + F +F + A +AHNA FD GF+ A + P Sbjct: 75 ITGITTAMVIDAPRIERVLPAFLEF--ARGAVLVAHNAPFDTGFLKAAAAATD-TPWPKF 131 Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ T+ +ARR L+SL + + + H AL D+ DV ++ Sbjct: 132 TVLCTVKLARRVLTRDEAPSVKLSSLARLLDVGTT--PTHRALDDARATVDVLHALI--A 187 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 N G + E +P++S +R K Sbjct: 188 RVGNQGVHS-----LTELVDYLPDVSSHQRAK 214 >gi|212696923|ref|ZP_03305051.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM 7454] gi|212676213|gb|EEB35820.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM 7454] Length = 1010 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 11/162 (6%) Query: 15 ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74 ETTGL +D+I EIGAV++ + T F + P + + ++L GIT+E + DKP Sbjct: 2 ETTGLYKYSDKITEIGAVKVENGEIT-EVFNELVNPE-KMIPEKVVELTGITNEMVMDKP 59 Query: 75 SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134 I +F +F ++A ++ N FD+GFI ++ +DTL +AR Sbjct: 60 KIDEILPKFLEF--SKDAYFVGQNTDFDIGFIKEACDNLSYQFEPV--YLDTLPMARAVF 115 Query: 135 PS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKM 174 PS R L+ L K+ + +H H A D+ + V+IK+ Sbjct: 116 PSMGRFSLDKLAKKLAVGPFNH---HRASDDAMTTAKVFIKL 154 >gi|225163449|ref|ZP_03725765.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] gi|224801949|gb|EEG20229.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] Length = 197 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 7/174 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M ++FD+ETTG + + II+I AV L+D ++ TF ++ P R +L GIT Sbjct: 1 MNLVIFDLETTGFSPRWNDIIQIAAVRLVDGRISDETFSTYVSP-RRPVPDHITELTGIT 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRINKDPLDPSRII 124 D + D P S F F + +AHN +FD+ FI P+ P R I Sbjct: 60 DADVADAPETSDALRAFARFVGDVGPTTLVAHNGHRFDMRFIAESCTLHGL-PMRPIRFI 118 Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYIKMM 175 D++ ++++ P+ ++L+ + +R GI I+ +H A D HLL++ +M+ Sbjct: 119 DSIWLSKKLWPAESLHNLDVIVERLGIETGITGHRRHDARADVHLLANAVRRMI 172 >gi|148543926|ref|YP_001271296.1| DNA polymerase III PolC [Lactobacillus reuteri DSM 20016] gi|184153322|ref|YP_001841663.1| DNA polymerase III PolC [Lactobacillus reuteri JCM 1112] gi|227364835|ref|ZP_03848882.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3] gi|325682539|ref|ZP_08162056.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A] gi|166918295|sp|A5VJD5|DPO3_LACRD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|148530960|gb|ABQ82959.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus reuteri DSM 20016] gi|183224666|dbj|BAG25183.1| DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112] gi|227070098|gb|EEI08474.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3] gi|324978378|gb|EGC15328.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A] Length = 1443 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 ++FD+ETTGL + D++IE+ AV++ D + F F+ P G S + L IT Sbjct: 424 QTYVIFDVETTGLSAIYDKVIELSAVKMQDGN-VLERFDEFIDP-GFPLSEQTTNLTSIT 481 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++ + +F F DF + HN FD+GF+N +R + +IDT Sbjct: 482 TEMVQGSKTEEEVFQMFKDFC--KGCIIAGHNVSFDMGFMNTGYERHQMGKIAE-PVIDT 538 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L +AR +P R LN+L K++ + + H H A DS + K + Sbjct: 539 LPLARFLYPDMRGYRLNTLSKKFKVALEHH--HRANYDSEATGHLLYKFL 586 >gi|71279381|ref|YP_267529.1| exonuclease [Colwellia psychrerythraea 34H] gi|71145121|gb|AAZ25594.1| exonuclease [Colwellia psychrerythraea 34H] Length = 203 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 9/179 (5%) Query: 4 KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 N I+ D ETTGL N DR IEIGAV+L + T+R FQ + P GR S Sbjct: 1 MNANSLIILDFETTGLSPDNGDRAIEIGAVKLENGVVTDR-FQELMYP-GRPVSHFIADY 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT+ L + F F QN +AHNA FD F+++EL+RI+ + Sbjct: 59 TGITNVMLSKAAPCHEVMDRFSGFIQGQN--LVAHNASFDKRFLDSELKRISSG--YDGQ 114 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +L ++RR + + + L +L GI S+ S H AL DS + + +++ M+ Q Sbjct: 115 FACSLLLSRRLYQTAPNHKLGTLINYKGIA-SNGSFHRALYDSEMTAKLWVAMLDDIQQ 172 >gi|194467743|ref|ZP_03073729.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23] gi|194452596|gb|EDX41494.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23] Length = 1443 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 ++FD+ETTGL + D++IE+ AV++ D + F F+ P G S + L IT Sbjct: 424 QTYVIFDVETTGLSAIYDKVIELSAVKMQDGN-VLERFDEFIDP-GFPLSEQTTNLTSIT 481 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++ + +F F DF + HN FD+GF+N +R + +IDT Sbjct: 482 TEMVQGSKTEEEVFQMFKDFC--KGCIIAGHNVAFDMGFMNTGYERHQMGKIAE-PVIDT 538 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L +AR +P R LN+L K++ + + H H A DS + K + Sbjct: 539 LPLARFLYPDMRGYRLNTLSKKFKVALEHH--HRANYDSEATGHLLYKFL 586 >gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158] gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158] Length = 375 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 10/172 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ + D+ETTG S RI EIG VE+ T+ + P G+ P +L Sbjct: 10 ASEQPLVFVDLETTGGSSAEHRITEIGVVEV--GPLGVSTWTTLVNP-GQSIPPFIQQLT 66 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+D ++D PSF+S+ ++ + ++AHNA FD GF+ AE +R + Sbjct: 67 GISDAMVRDAPSFASLAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGYAFNPD--V 122 Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + T+ ++R P R+ L++L +R+G+ S ++H AL D+ LL + ++ Sbjct: 123 LCTVRLSRALFPREARHGLDALIERHGLVPS--ARHRALADADLLWQFWRQL 172 >gi|90414417|ref|ZP_01222394.1| putative DNA polymerase III [Photobacterium profundum 3TCK] gi|90324530|gb|EAS41086.1| putative DNA polymerase III [Photobacterium profundum 3TCK] Length = 214 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 10/203 (4%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N IV D ETTGL + DR IEIGAV + + +R FQ + P G + S Sbjct: 11 NANTVIVLDFETTGLSPTQGDRAIEIGAVLMENGKVVDR-FQKLMNP-GFRVSSFIEGYT 68 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT+ L+ + + +F DF + N +AHNA FD F++AEL I + Sbjct: 69 GITNNMLRTAAPCNEVMDQFTDFIGDYN--LVAHNASFDKRFLDAELDIIKRSY--GGEF 124 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++ IARR + + + L SL I H AL DS + + ++++M+ Q Sbjct: 125 ACSMLIARRLYQNAPNHKLGSLVAYKNID-HDGVFHRALADSEMTAKLWLQMLEDL-QNQ 182 Query: 183 FGFKTNEDRFFKEEKKTVPNISL 205 F ++ K + Sbjct: 183 FHIPQPSFALMQQVSKKTKAAAP 205 >gi|302338443|ref|YP_003803649.1| DNA polymerase III subunit epsilon [Spirochaeta smaragdinae DSM 11293] gi|301635628|gb|ADK81055.1| DNA polymerase III, epsilon subunit [Spirochaeta smaragdinae DSM 11293] Length = 210 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ETTGLDS DRI+EIGAV KT TF + P G P + +HGITD+ Sbjct: 25 FVSFDFETTGLDSFRDRILEIGAVSWRQG-KTKETFSSLVRP-GIPVPPASTAVHGITDD 82 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P F F + A +AHN FD GF+ + + R+ L + IDTL+ Sbjct: 83 DLLDAPDEKGALVSFLRFIEGKVA--VAHNLPFDYGFLESSVDRLGLS-LGDTLFIDTLT 139 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++RR +P L +L + H AL D+ ++ + + Q+ Sbjct: 140 LSRRVYPGLPSYALGNLITFLN--LFQEDAHRALSDASDCGRLFFRCLDEDKQM 191 >gi|227544953|ref|ZP_03975002.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300910016|ref|ZP_07127476.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112] gi|227185064|gb|EEI65135.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300892664|gb|EFK86024.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112] Length = 1443 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 ++FD+ETTGL + D++IE+ AV++ D + F F+ P G S + L IT Sbjct: 424 QTYVIFDVETTGLSAIYDKVIELSAVKMQDGN-VLERFDEFIDP-GFPLSEQTTNLTSIT 481 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++ + +F F DF + HN FD+GF+N +R + +IDT Sbjct: 482 TEMVQGSKTEEEVFQMFKDFC--KGCIIAGHNVAFDMGFMNTGYERHQMGKIAE-PVIDT 538 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L +AR +P R LN+L K++ + + H H A DS + K + Sbjct: 539 LPLARFLYPDMRGYRLNTLSKKFKVALEHH--HRANYDSEATGHLLYKFL 586 >gi|154500376|ref|ZP_02038414.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC 29799] gi|150270881|gb|EDM98164.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC 29799] Length = 1390 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 31/247 (12%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + FDIETTGLD++ D IIEIGAV L + + TF F+ P GR S E ++L ITD+ Sbjct: 370 VCFDIETTGLDNRRDVIIEIGAVILRNG-EIAETFDTFVSP-GRPLSREIVELTSITDKM 427 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ PS F +F ++ AHNA+FD+GFI +R S IDTL + Sbjct: 428 LEGAPSQEEAIRAFLEFAGDR--PLAAHNAEFDMGFIAEGCRRYGIPFEKTS--IDTLIL 483 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFGF 185 A+ P + L+ + + + + H A D+ +++ + + KM+ + G Sbjct: 484 AQNLLPDLGKYKLDIVAEH--LRLPPFKHHRADADAGMVAYMLVPFFKMLE-----DLGI 536 Query: 186 KTNED--------RFFKEEKKTVPNISLLKRD----KPLFTRITKEELDEHDKTIQTLGK 233 T + R + ++ ++ +L ++ + L+T I+K L EH K + Sbjct: 537 HTLQSINPEMTRLRVKGKARRQPKHLIVLAKNNMGLRNLYTLISKAHL-EHFKRYPIM-P 594 Query: 234 NAIWDRY 240 ++ ++Y Sbjct: 595 KSLINQY 601 >gi|134299597|ref|YP_001113093.1| DNA polymerase III subunit epsilon [Desulfotomaculum reducens MI-1] gi|134052297|gb|ABO50268.1| DNA polymerase III, epsilon subunit [Desulfotomaculum reducens MI-1] Length = 930 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 12/176 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + + D+ET+GLD D IIEIG V+++D + + +F + P G + +L GI Sbjct: 2 LNFVALDLETSGLDCLQDEIIEIGLVKMVDGKEID-SFSTLIRPKG-ILPVKIKRLTGIK 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D L+D P + F + + HN KFD F++ +Q +PL DT Sbjct: 60 DHELQDAPKLQEVLPVILQFIA--DLPLVGHNVKFDYDFLSTAVQSPLANPL-----YDT 112 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L +++ P S + L LC GI I ++ H AL D+ + + I ++ ++ Sbjct: 113 LELSKYLMPGASNHRLGYLCSYLGIDIPNQ--HRALDDARGAAMLLIHLLNQCEEM 166 >gi|89099885|ref|ZP_01172757.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911] gi|89085443|gb|EAR64572.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911] Length = 934 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 9/178 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + +V D+ETTG +K D+II+ AV +++ K + L P G++ +L G+ Sbjct: 4 KYVVVDLETTGNSAKKGDKIIQFAAV-VMEGGKIIDQYSSLLNP-GKEIPAFIEELTGLN 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + ++A ++AHN FD+ F+ EL +IDT Sbjct: 62 DSMVSDAPVFAEIAPKVMELL--EDAYFVAHNVLFDLSFLQEELLDAGFPGF-YGPVIDT 118 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + +AR P S L+ L + GI H H A D++ + + + ++ Sbjct: 119 VELARTVLPCSDSYKLSDLSAKEGIM--HDRPHQADSDAYATAKLLHIFLERLEELPL 174 >gi|294339674|emb|CAZ88034.1| putative protein fusion of DNA polymerase III, epsilon subunit and Excinuclease ABC, C subunit [Thiomonas sp. 3As] Length = 469 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 96/210 (45%), Gaps = 14/210 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG + DRI E+ AV ++ + + + P G++ P +L GI D Sbjct: 5 YVLLDLETTGSNPVLDRITEV-AVMRVEQGEVVAKWSRLVNP-GQRIPPFIQQLTGIDDA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+F + E + A +AHN +FD GF+ R D + + T+ Sbjct: 63 MVAGAPAFGEVLPELLAALD--GAVLVAHNVRFDHGFLKQAAAREGVDL--RVKTLCTVR 118 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R+ +P +R + L+++ +R+G+ + ++H A+ D LL ++ + +Q G + Sbjct: 119 LSRKLYPQARGHGLDAIMRRHGLHTT--ARHRAMGDVELLHQ-WLHI----AQTELGPAS 171 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + + + + L+ + Sbjct: 172 VQTAALELLRGSASLPPHLETPVDDIPEAS 201 >gi|322417781|ref|YP_004197004.1| putative PAS/PAC sensor protein [Geobacter sp. M18] gi|320124168|gb|ADW11728.1| putative PAS/PAC sensor protein [Geobacter sp. M18] Length = 835 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 9/173 (5%) Query: 6 KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLH 63 + +VFD ETTGL S+ D+++ I AV + N F + P GR E+ H Sbjct: 638 DLEYVVFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNP-GRHIPAESTAFH 696 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I D + D PS + ++ +F + +A +AHNA FD ++ PL + I Sbjct: 697 RIEDHMVADAPSMNEVYPQFVKYAG--DAVLVAHNAAFDKKCLDMAAAEAGL-PLVENPI 753 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DTL ++ H + + L+++ +R GI I R H +L D+ + +++ ++ Sbjct: 754 LDTLFLSVGLHSGTEGHSLDAMAQRMGIAIEGR--HTSLGDARATAQIFLGLL 804 >gi|325983091|ref|YP_004295493.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] gi|325532610|gb|ADZ27331.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212] Length = 463 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 85/161 (52%), Gaps = 9/161 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG+ DRI EIG + + +T R + + P G P +L GIT + Sbjct: 8 YVLLDLETTGVTPTQDRITEIGLIRYENGVETGR-WNTLINP-GINIPPFIQRLTGITQD 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+FS ++ + ++ A AHNA+FD GF+ E +RI +++ T+ Sbjct: 66 MVDHAPTFSQVYETLLQWLDQ--AVLCAHNARFDYGFLKNEFKRIGVTF--QKKLLCTVK 121 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLS 168 ++R+ +P + LN++ +R+ + R H A+ D+ +++ Sbjct: 122 LSRKLYPQHHSHSLNAIIERFRLICDQR--HRAMGDTEMIA 160 >gi|170726548|ref|YP_001760574.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908] gi|169811895|gb|ACA86479.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908] Length = 205 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 87/200 (43%), Gaps = 10/200 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ IV D ETTGL + DR IEIGAV+L D TFQ + P G + + Sbjct: 1 MLNPASNSAIVLDFETTGLSPNQGDRAIEIGAVKLEDG-VVVDTFQALMNP-GFRITSFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GIT++ L + F DF + +AHNA FD F++AEL IN+ Sbjct: 59 ESYTGITNQMLSTAAPCEVVMDRFADFI--HGSNLVAHNASFDQRFLDAELSLINRHY-- 114 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ IARR + + L L I H AL DS + + +++ M+ Sbjct: 115 TGEFACSMLIARRIYQEAPNHKLGGLVAFRQIENDG-VFHRALADSEMTAKLWLTMIED- 172 Query: 179 SQINFGFKTNEDRFFKEEKK 198 Q + T + ++ K Sbjct: 173 IQTRYSITTPSFKLMQKIAK 192 >gi|119471121|ref|ZP_01613653.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7] gi|119445777|gb|EAW27059.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7] Length = 745 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG +R+ EIG V+ + + K T+ + P R KL GI+D Sbjct: 579 YSVVDIETTGGLKGGNRVTEIGIVK-VQHGKVIDTWTTLINPQ-RHIPSFITKLTGISDG 636 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P F+ I D + ++AHN FD GFI E + + T+ Sbjct: 637 MVYNAPVFADIAQPLLDKLA--GSIFVAHNVNFDYGFIKKECEVAGH--FFKMPKMCTVV 692 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +RR + L +L + + ++ S H AL D+ +++ + + Sbjct: 693 ESRRAFKGLKSYSLGNLSAHFNLNLT--SHHRALADATATAELLLLI 737 >gi|317056777|ref|YP_004105244.1| DNA polymerase III subunit alpha [Ruminococcus albus 7] gi|315449046|gb|ADU22610.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7] Length = 1500 Score = 154 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 11/177 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTG ++K D+IIEIGAV+L + ++ F + + P + L ITD+ Sbjct: 449 IICFDLETTGTNAKEDKIIEIGAVKLRNLEIVDK-FDMLVDPE-VPLTEFISNLTNITDD 506 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK + + F F + +AHNA FD GFI +R+ D +DT+ Sbjct: 507 MLKGQADIRTAIDAFIAFCGDSPC-LVAHNAPFDTGFIRNTCERLGIDF--NFSSVDTVP 563 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI---KMMVGGSQI 181 +++ P R+ LN + + +G H D+ +L ++I KM++ + Sbjct: 564 MSQLMLPQLERHKLNYVAEHFG--YGDFQHHRGCDDAEVLGHIFIELSKMLMAQYPL 618 >gi|228998363|ref|ZP_04157954.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17] gi|228761284|gb|EEM10239.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17] Length = 315 Score = 154 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + NDRII++ AV ++ ++ F F+ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDRIIQVAAVRYRNHELADQ-FVSFVNPE-RFIPNRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F E +AHNA FD+ F+ + + + P + +IDT+ Sbjct: 68 RVSDAPTIQEVLPLFLAFLGED--TIVAHNASFDMRFLKSNANML-RLPEPKNIVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A+R + L +L + GI +S H AL D + VY K Sbjct: 125 LAKRYMKHAPNHKLETLKRMLGICLS---SHNALDDCITCAAVYQK 167 >gi|254495198|ref|ZP_05108122.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] gi|85819550|gb|EAQ40707.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] Length = 461 Score = 154 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG K +I EI + + D K F + P + P L GIT+ Sbjct: 2 YTVIDIETTGNGFKGQKITEIS-IFVFDGKKIIDEFTSLINPE-QNIPPFITNLTGITNA 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F I + + ++ ++AHN FD I E + + D + + T+ Sbjct: 60 MVRYAPKFHEIAKKVEEL--TRDTIFVAHNVNFDYNIIRDEFKSLGFDF--KRKKLCTVR 115 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++R+ P R L ++C I I+ R H A D+ ++++ +++ Sbjct: 116 LSRKIMPGLRSYSLGNICIDENIPINGR--HRAKGDAEATTELFRRLIE 162 >gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM 6192] gi|306532600|gb|ADN02134.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM 6192] Length = 198 Score = 154 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 8/174 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K + FD+ETTGLD ++EI V+ + F + + P E K Sbjct: 14 IDWRKEVVVTFDLETTGLDPVRHSVVEIACVKFQ-GGEPRAFFSLLVKPP-HPIPAEVTK 71 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI D+ +++ P S+ F +AHNA FD+ F+ E R + P Sbjct: 72 IHGIGDQDVEEAPPLPSVLPMLESFVGTH--LLVAHNAPFDLSFLRMEYARCGR-PYPGF 128 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R IDT +AR P R L SL + I + H H AL D+ D++ + Sbjct: 129 RAIDTRLLARSVLPHLGRYSLASLTRALDIPLQHH--HRALSDAWACGDLFYAL 180 >gi|117920694|ref|YP_869886.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3] gi|117613026|gb|ABK48480.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3] Length = 229 Score = 154 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 16/208 (7%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL + R IEIGAV + T R F + P G + + GI+++ Sbjct: 31 VVLDFETSGLSPNQGARAIEIGAVLIEQGQITAR-FSELMNP-GFRINSFIEDYTGISNQ 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + F +F + +AHNA FD F++AE +I P + +L Sbjct: 89 MLAHAAPCAEVMARFAEFIGKH--HLVAHNATFDQRFLDAEFSQIGHQY--PGQFGCSLL 144 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR +P + + L +L + + ++ + H AL D+ + ++++M+ Q G+ Sbjct: 145 LARRLYPEAINHQLATLVRHKQLP-TNGTYHRALADAEMTGHLWLRMLADLKQ---GYAI 200 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215 E F +K ++ K + P F R Sbjct: 201 TEPPFSLMQKI----MAKTKAEVPKFLR 224 >gi|71907264|ref|YP_284851.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] gi|71846885|gb|AAZ46381.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] Length = 721 Score = 154 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 3 RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEAL 60 + + + VFD ETTGL+ D II+IGA +++ TF + P P ++ Sbjct: 525 KLSDLTYTVFDTETTGLEPSNGDEIIQIGAARIVNNRLLRQETFNQIVDPEI-PLKPASI 583 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGIT++ ++ +P+ + F +F ++ IAHNA FD+ F+ + +R N P Sbjct: 584 PIHGITEDMVRGQPNIDVVLPAFHEFC--EDTVLIAHNAAFDMRFLQLKEERTNIRFTQP 641 Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++DTL ++ HP + L+ + +R GITI R H AL D+ +V++K++ Sbjct: 642 --VLDTLLLSAVVHPNQESHKLDVILERLGITIGKR--HNALEDALATGEVFLKLVKLLE 697 Query: 180 QINFGFKTNEDRFFKEEKKTVPNIS 204 + G T EK + Sbjct: 698 --DQGIVTVRQALEAAEKTYFARVK 720 >gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 1447 Score = 154 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 9/185 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 ++FDIETTGL + DRII++ AV++ D + F F+ P G S + L IT Sbjct: 425 QPYVIFDIETTGLSAIYDRIIQVSAVKMQDG-EVLDHFDQFIDP-GFHLSEQTTALTSIT 482 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ ++ + + F DF + HN FD+GF+N +R + +IDT Sbjct: 483 DDMVQGSKTEEEVLKLFDDF--ADGSLLAGHNVSFDMGFMNVAYERHGMGQI-KQPVIDT 539 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L +AR HP R LN+L KR+ +++ H H A DS + + + + ++ +G Sbjct: 540 LPLARFLHPDFRGYRLNTLSKRFKVSLEHH--HLASYDSEATGHL-LAIFLKDAEERYGV 596 Query: 186 KTNED 190 +D Sbjct: 597 TYVDD 601 >gi|184155198|ref|YP_001843538.1| DNA polymerase III PolC [Lactobacillus fermentum IFO 3956] gi|183226542|dbj|BAG27058.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus fermentum IFO 3956] Length = 1447 Score = 154 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 9/185 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 ++FDIETTGL + DRII++ AV++ D + F F+ P G S + L IT Sbjct: 425 QPYVIFDIETTGLSAIYDRIIQVSAVKMQDG-EVLDHFDQFIDP-GFHLSEQTTALTSIT 482 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ ++ + + F DF + HN FD+GF+N +R + +IDT Sbjct: 483 DDMVQGSKTEEEVLKLFDDF--ADGSLLAGHNVSFDMGFMNVAYERHGMGQI-KQPVIDT 539 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L +AR HP R LN+L KR+ +++ H H A DS + + + + ++ +G Sbjct: 540 LPLARFLHPDFRGYRLNTLSKRFKVSLEHH--HLASYDSEATGHL-LAIFLKDAEERYGV 596 Query: 186 KTNED 190 +D Sbjct: 597 TYVDD 601 >gi|229018800|ref|ZP_04175648.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273] gi|229025042|ref|ZP_04181470.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272] gi|228736248|gb|EEL86815.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272] gi|228742492|gb|EEL92644.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273] Length = 315 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 9/165 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RPIPNRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P +++IDT+ Sbjct: 68 RVSDAPTIEEVLPFFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +A++ + L +L + GI +S H A D + VY Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQ 166 >gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus fermentum 28-3-CHN] gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus fermentum 28-3-CHN] Length = 1447 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 9/185 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 ++FDIETTGL + DRII++ AV++ D + F F+ P G S + L IT Sbjct: 425 QPYVIFDIETTGLSAIYDRIIQVSAVKMQDG-EVLDHFDQFIDP-GFHLSEQTTALTSIT 482 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ ++ + + F DF + HN FD+GF+N +R + +IDT Sbjct: 483 DDMVQGSKTEEEVLKLFDDF--ADGSLLAGHNVSFDMGFMNVAYERHGMGQI-KQPVIDT 539 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L +AR HP R LN+L KR+ +++ H H A DS + + + + ++ +G Sbjct: 540 LPLARFLHPDFRGYRLNTLSKRFKVSLEHH--HLASYDSEATGHL-LAIFLKDAEERYGV 596 Query: 186 KTNED 190 +D Sbjct: 597 TYVDD 601 >gi|227495992|ref|ZP_03926303.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM 15434] gi|226834480|gb|EEH66863.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM 15434] Length = 547 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 85/220 (38%), Gaps = 12/220 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +V D+ETTG + I EIGAV + + + P GR + Sbjct: 24 TPLQETTFVVVDLETTGAGPGSHTITEIGAVRVR-GGQVEDELSTLVNP-GRAIPAQITV 81 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L GIT+ + P F + E+ +AHNA+FDVG + + + D + Sbjct: 82 LTGITNAMVAGAPPVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHE 141 Query: 120 PSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 P R++DTL++ARR + L +L G R H AL D+ DV + Sbjct: 142 P-RVLDTLALARRAWTRSEVPNHRLATLASFVGSPT--RPTHRALDDARATVDVLHAALE 198 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 + G ED + + + + L T Sbjct: 199 VLGPL--GVTHLEDLATATDPVPARRRAKSRLAQDLPTSP 236 >gi|329569951|gb|EGG51706.1| exonuclease, DNA polymerase III, epsilon subunit family [Enterococcus faecalis TX1467] Length = 240 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|86741790|ref|YP_482190.1| hypothetical protein Francci3_3104 [Frankia sp. CcI3] gi|86568652|gb|ABD12461.1| DNA polymerase III, epsilon subunit [Frankia sp. CcI3] Length = 584 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 86/205 (41%), Gaps = 17/205 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG D I EIGAV + + + P G P L GITD Sbjct: 30 FVVFDLETTGTSPGRDEITEIGAVRVR-GGRILAEMATLVRP-GVGIPPMVSVLTGITDV 87 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + + F +F + A +AHNA FD+GF+ A ++ P+ +DTL Sbjct: 88 MVATAPPVTQVLPTFLEF--ARGAVLVAHNAPFDLGFLRAAVELCGY-PVPVWEYLDTLR 144 Query: 129 IARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 IARR + S L SL + + R H AL D+ DV + N G Sbjct: 145 IARRVVTRDESPDCRLTSLASLFRSPVEPR--HRALADARATVDVLHGL--FERLGNAGV 200 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 T ED +S +R K Sbjct: 201 TTLEDLH-----DYSSRVSPAQRRK 220 >gi|163941216|ref|YP_001646100.1| DNA polymerase III subunit epsilon [Bacillus weihenstephanensis KBAB4] gi|163863413|gb|ABY44472.1| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis KBAB4] Length = 315 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 19/208 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + + +AHNA FD+ F+ + + + P + +IDT+ Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTK--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQKC----------AAV 171 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215 E+ K K+ + ++ + K + R Sbjct: 172 EEEGKRKANKEVLDETAVFEAVKEMLVR 199 >gi|212638970|ref|YP_002315490.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Anoxybacillus flavithermus WK1] gi|212560450|gb|ACJ33505.1| DNA polymerase III, epsilon subunit and Rad3-related DNA helicase [Anoxybacillus flavithermus WK1] Length = 880 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 9/164 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V DIETTG K DRII+IG V +++ K + F F+ P R +L GI Sbjct: 4 RFVVVDIETTGNAPKKEDRIIQIGFV-VIEGDKVKKRFSTFVQPE-RDIPLFIQQLTGID 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D P F I + + + A ++AHN +FD F+ E R P R++DT Sbjct: 62 HAMVHDAPPFQHIAAMLVE--QWEGAYFVAHNVQFDWAFLQEEFIRSGIQP-PTCRLLDT 118 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + +AR P S LN L + ++ +H H A D+ + Sbjct: 119 VELARFLMPTQSSYKLNHLAEA--LSFAHDRPHQADYDAEATAQ 160 >gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu] Length = 375 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 10/170 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + + D+ETTG S RI EIG VE+ T+ + P G+ P +L GI Sbjct: 12 EQPLVFVDLETTGGSSAEHRITEIGVVEI--GPLGVSTWTSLVNP-GQPIPPFIQQLTGI 68 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D ++D PSF+S+ ++ + ++AHNA FD GF+ AE +RI ++ Sbjct: 69 SDAMVRDAPSFASLAPALFERLD--GKLFVAHNASFDRGFLRAEFERIGLAFNPD--VLC 124 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ ++R P SR+ L++L +R+G+ S ++H AL D+ LL + ++ Sbjct: 125 TVRLSRALFPRESRHGLDALIERHGLVPS--ARHRALADADLLWQFWRQL 172 >gi|126651265|ref|ZP_01723475.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. B14905] gi|126592103|gb|EAZ86169.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus sp. B14905] Length = 914 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 9/161 (5%) Query: 13 DIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ETTG N DR+I+I V + D+ + RT+ F+ P G+ L IT+E +K Sbjct: 2 DLETTGHSPANGDRMIQIAIVIMKDW-EIERTYTKFINP-GKAIPSFIQDLTHITNEDVK 59 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 D F ++ + ++AHNA FD+ F+ AE +R P + +DT+ +A+ Sbjct: 60 DSYPFEEHADYIYELLA--DCVFVAHNADFDLSFLQAEFKRAGL-PKWQGKKMDTVELAK 116 Query: 132 RKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 P S L L I +++ H A D+ ++++ Sbjct: 117 ILFPMSLGFKLGDLAADLNIELAN--AHRADDDARATAELF 155 >gi|89902537|ref|YP_525008.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118] gi|89347274|gb|ABD71477.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118] Length = 722 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 93/175 (53%), Gaps = 10/175 (5%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61 + + VFD ETTGL+ + D II+IGA +++ +F+ + P+ R S +++ Sbjct: 527 LSDLSYTVFDTETTGLNPAEGDEIIQIGAARIVNKKILRQESFEQLVNPD-RLISAASVQ 585 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT + + +P + F F Q+ +AHNA FD+ F+ + P Sbjct: 586 IHGITQDRVIGQPRIGEVLPAFHAF--AQDTVLVAHNAAFDMKFLQLKEAATGLAFHQP- 642 Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++DTL ++ HP + L ++ +R+ IT+ R H AL D+ + ++V+++++ Sbjct: 643 -VLDTLLLSAVVHPNQESHRLEAIAERFNITVLGR--HTALGDAMVTAEVWLRLI 694 >gi|15835150|ref|NP_296909.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270285322|ref|ZP_06194716.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270289339|ref|ZP_06195641.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss] gi|301336719|ref|ZP_07224921.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14] gi|8163241|gb|AAF73567.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum Nigg] Length = 232 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 84/216 (38%), Gaps = 16/216 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRI+EI A T +FQ + P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIVEIAAY----NGTTGESFQTLVNPEI-PIPAEATKIHGITTSE 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P F + +F DF N +AH N FD + E +R P R ID+L Sbjct: 60 VANAPKFPEAYQQFSDFCGTDN-ILVAHNNNAFDYPLLLRECRRHGL-PEPQLRTIDSLK 117 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 A++ ++ L L + YG + H AL D L V+ ++ S Sbjct: 118 WAKKYRTDLPQHSLQYLRQVYG--FEENNAHRALDDVITLHRVFSVLVGDLSPDQIYNLL 175 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 NE + K + K + + + Sbjct: 176 NETCHPRVFK-----MPFGKYKGKPLSEVPSSYIAW 206 >gi|327440746|dbj|BAK17111.1| Rad3-related DNA helicase [Solibacillus silvestris StLB046] Length = 926 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 9/171 (5%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 K + + DIETTG DR+I+I V + + + + F+ P G+ Sbjct: 1 MKESQKYAIVDIETTGHSPASGDRMIQIAIVIMQGWEIV-KKYSTFINP-GKPIPLFIQD 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L ITDE +KD F + ++ + A ++AHN FD+ F+ AE R Sbjct: 59 LTNITDEDVKDALPFEAYADYIYELL--EGAVFVAHNTDFDLNFLQAEFNRAGLSKWH-G 115 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + IDT+ + + P S L+ L + I + +S H A D+ + + Sbjct: 116 KKIDTVELTKILFPMSLSYKLSDLANDFNILL--QSAHRADDDALATAYLL 164 >gi|315187162|gb|EFU20919.1| DNA polymerase III, epsilon subunit [Spirochaeta thermophila DSM 6578] Length = 198 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 8/174 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K + FD+ETTGLD ++EI V+ + F + + P E K Sbjct: 14 IDWRKEVVVAFDLETTGLDPVRHSVVEIACVKFQ-GGEPRAFFSLLVKPP-HPIPAEVTK 71 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI D+ +++ P S+ F +AHNA FD+ F+ E R + P Sbjct: 72 IHGIGDQDVEEAPPLPSVLPMLESFVGTH--LLVAHNAPFDLSFLRIEYARCGR-PYPGF 128 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R IDT +AR P R L SL + I + + H AL D+ D++ + Sbjct: 129 RAIDTRLLARSVLPHLGRYSLASLTRALDIPL--QQHHRALSDAWACGDLFYAL 180 >gi|218753913|ref|ZP_03532709.1| hypothetical protein MtubG1_10964 [Mycobacterium tuberculosis GM 1503] Length = 493 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 23/223 (10%) Query: 2 IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 + + +V D+ETTG + D I EIGAV++ + F + P Sbjct: 28 MSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGE-FATLVNPQ-HSI 85 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+ ++L GIT + + P+ ++ F++F ++ +AHNA FD+GF+ A +R + Sbjct: 86 PPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAG--DSVLVAHNAGFDIGFLRAAARRCDI 143 Query: 116 DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +++ T+ +ARR L +L + + + + H AL D+ DV Sbjct: 144 TWPQP-QVLCTMRLARRVLSRDEAPSVRLAALARLFAV--ASNPTHRALDDARATVDVLH 200 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 ++ N G T + E + +PN++ +R K + Sbjct: 201 ALIERVG--NQGVHT-----YAELRSYLPNVTQAQRCKRVLAE 236 >gi|114773251|ref|ZP_01450486.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255] gi|114546370|gb|EAU49279.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255] Length = 313 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 10/169 (5%) Query: 5 NKM-RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N M +V DIETTG + + +I EIG V++++ + +Q L P R+ L Sbjct: 137 NPMQPYVVVDIETTGGRATSHKITEIGMVKVINGQVVDE-YQTLLNPK-RRIPRNITALT 194 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI D + + P F+ + E F + ++AHN FD GFI E R+ + Sbjct: 195 GIDDVMVSNAPIFAEVADEVAQF--TKGCVFVAHNVNFDYGFIKQEFTRLERHF--SRAK 250 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + T+ R+ P + L +L + +GI +S H A+ D+ +++ Sbjct: 251 LCTVREMRKARPGLASYSLANLTRHFGIEMS--RHHRAMSDAIAANELL 297 >gi|308069470|ref|YP_003871075.1| DnaQ family exonuclease/DinG family helicase, [Paenibacillus polymyxa E681] gi|305858749|gb|ADM70537.1| DnaQ family exonuclease/DinG family helicase, putative [Paenibacillus polymyxa E681] Length = 955 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 8/215 (3%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D ETTG S +D II++G + + +R + ++ P GR P L GIT Sbjct: 1 MKFAVLDFETTGTQSADD-IIQVGLAIIDHDNSISRVYGSYVNP-GRSIPPFITGLTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ +KD P+ + E + + + HN FD F+ L R P RI+DT Sbjct: 59 DDDVKDAPALEEMMMELVPMLD--DVVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILDT 115 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + + PS S L + + ++H H A D+ ++V++K + + Sbjct: 116 MDFLKIMFPSLSSYQLGFVSSEF--ELAHDRPHQADSDALATAEVFLKCLGELQALPLIT 173 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 F EE + R++ I E Sbjct: 174 IQRLSDLFAEEDSDLGWFLDGVREEKELDPIQDLE 208 >gi|239617281|ref|YP_002940603.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1] gi|239506112|gb|ACR79599.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1] Length = 1430 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGLD D IIEIGAV+L F F+ P R S + ++ GI+D Sbjct: 419 YVVFDLETTGLDPSADEIIEIGAVKLKGTEVIGE-FSSFVKPE-RNLSEKVTRITGISDR 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D PS S + +F +F +++ +AHNA FD F+ ++++ + IDTL+ Sbjct: 477 ELEDAPSLSEVLPKFLEFC--KDSVLVAHNATFDYRFVRNAVKQLYNEDWKL-PYIDTLA 533 Query: 129 IARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +++ S L+++ KR + H H A D+ + ++V+ K++ + Sbjct: 534 LSKSLLKSKSYSLDNVVKRLKLGDFEH---HRASEDARITAEVFKKLLSMAKKRGI 586 >gi|138895754|ref|YP_001126207.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus thermodenitrificans NG80-2] gi|134267267|gb|ABO67462.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2] Length = 911 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 106/245 (43%), Gaps = 26/245 (10%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR ++ D+ETTG K DRII++G + D S R F F P + +L I Sbjct: 3 MRFVIIDLETTGNVPKKGDRIIQLGMAVVEDGSIVKR-FASFFNPE-QPIPLFIQQLTNI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ P F+ E + A ++AHN FD+ F+ AEL+R P ID Sbjct: 61 DEQTVEGAPLFADKADEITAMM--EGAYFVAHNVDFDLPFLQAELERAGWPPF-TGPTID 117 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---------- 174 T+ +AR P+ L L K+ G + H H A D+ + + ++I + Sbjct: 118 TVELARIVLPTAESYKLGDLAKQLG--LHHDRPHQADSDAEVTAKLFIALLERLGRLPLV 175 Query: 175 -MVGGSQINFGFKTN----EDRFFKEEKKTVP--NISLLKRDKPLFTRITKEELDEHDKT 227 + ++ K++ D E++K P N L R L +K E + +K Sbjct: 176 TLEQLRRLAHHLKSDIYSLLDLVITEKQKEAPMDNTIALYRGIALKKPASKPESGDDEKR 235 Query: 228 IQTLG 232 + ++ Sbjct: 236 LASVS 240 >gi|325847082|ref|ZP_08169908.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481054|gb|EGC84099.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 1010 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 11/162 (6%) Query: 15 ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74 ETTGL +D+I EIGAV++ + T F + P + + ++L GIT+E + DKP Sbjct: 2 ETTGLYKYSDKITEIGAVKVENGEIT-EVFNELVNPE-KMIPEKVVELTGITNEMVMDKP 59 Query: 75 SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKH 134 I +F +F ++A ++ N FD+GF+ ++ +DTL +AR Sbjct: 60 KIDEILPKFLEF--SKDAYFVGQNTDFDIGFVKEACDNLSYQFEPI--YLDTLPMARAVF 115 Query: 135 PS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKM 174 PS R L+ L K+ + +H H A D+ + V+IK+ Sbjct: 116 PSMGRFSLDKLAKKLAVGPFNH---HRASDDAMTTAKVFIKL 154 >gi|196248636|ref|ZP_03147336.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. G11MC16] gi|196211512|gb|EDY06271.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. G11MC16] Length = 911 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 26/245 (10%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR ++ D+ETTG K DRII++G + D S R F F P + +L I Sbjct: 3 MRFVIIDLETTGNVPKKGDRIIQLGMAVVEDGSIVKR-FASFFNPE-QPIPLFIQQLTNI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++ P F+ E + A ++AHN FD+ F+ AEL+R P ID Sbjct: 61 DEQTVEGAPLFADKADEITAMM--EGAYFVAHNVDFDLPFLQAELERAGWPPF-TGPTID 117 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF- 183 T+ +AR P+ L L K+ G + H H A D+ + + ++I ++ ++ Sbjct: 118 TVELARIVLPTAESYKLGDLAKQLG--LHHDRPHQADSDAEVTAKLFIALLERLGRLPLV 175 Query: 184 --------------GFKTNEDRFFKEEKKTVP--NISLLKRDKPLFTRITKEELDEHDKT 227 + D E++K P N L R L +K E + +K Sbjct: 176 TLEQLRRLVHHLKSDIYSLLDLVITEKQKEAPMDNTIALYRGIALKKPASKPESGDDEKR 235 Query: 228 IQTLG 232 + ++ Sbjct: 236 LASVS 240 >gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4] gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 375 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 91/172 (52%), Gaps = 10/172 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ + D+ETTG RI EIG VE+ T+ + P G+ P +L Sbjct: 10 ASEQPLVFVDLETTGGSPAEHRITEIGVVEIGPGHM--STWTTLVNP-GQPIPPFIQQLT 66 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+D+ ++D PSF+S+ ++ + ++AHNA FD GF+ AE +R + Sbjct: 67 GISDDMVRDAPSFASLAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGLAFNPD--V 122 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + T+ ++R P SR+ L++L +RYG+ + ++H AL D+ L+ + ++ Sbjct: 123 LCTVKLSRALFPRESRHGLDALIERYGLVPA--ARHRALADADLIWQFWRQL 172 >gi|325661635|ref|ZP_08150259.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472162|gb|EGC75376.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium 4_1_37FAA] Length = 238 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 96/228 (42%), Gaps = 18/228 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI+ + FD+ETTGL + D IIEIGAV++ D T+R F FL P + SP Sbjct: 1 MIKT----YVAFDLETTGLSEERDSIIEIGAVKVTDGKVTDR-FMEFLKP-AEEISPMIT 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++ GIT+E + + + +F F E+ + HN FD F+ + Sbjct: 55 QITGITNEMVAHARNTKEVIDDFMGFCGEE--VLLGHNILFDYKFMKRYACKYQHSF--E 110 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R IDTL IAR+ H L +LC Y I + H A D+ + +Y + Sbjct: 111 RRGIDTLKIARKVHKDLESRSLEALCVHYQIKND--AAHRAYHDALATAKLYHCLGHYFE 168 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF----TRITKEELDE 223 + E F++ +K P KR E+L+ Sbjct: 169 EKEPNLFVPEPLFYQ-PRKEQPATEKQKRYLEKLCGWHRIAVPEDLEA 215 >gi|46445870|ref|YP_007235.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia amoebophila UWE25] gi|46399511|emb|CAF22960.1| putative DNA polymerase III epsilon chain [Candidatus Protochlamydia amoebophila UWE25] Length = 249 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 15/225 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K + I D ETTGLD + DRIIE+ AV D ++ + + P ++ Sbjct: 1 MPDIEKNKFICIDCETTGLDPQQDRIIEV-AVMCFDGNQVYAQMESLINPEC-PIPETSI 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLD 119 +H IT + +KDKP+ + + + + ++ I H FD+ + +R + Sbjct: 59 AIHHITQDMVKDKPTINHVLPQILELISDH--IIIGHGVGFDIEILAVAAERHGIPCKIR 116 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +R +DTL +AR S N L L K + I + H A+ D + +V+ + Sbjct: 117 KNRFLDTLRMARLYGESPVNSLEYLRKHFNIPLEG--AHRAMSDVIVNKEVFKHL----- 169 Query: 180 QINFGFKTNEDRFFKEEKKTVPN-ISLLKRDKPLFTRITKEELDE 223 + ++T E F K + N + L K L I + L Sbjct: 170 --SKRYRTTEQLFEVLSKPILMNTMPLGKHKGRLLKEIPLQYLQW 212 >gi|16803938|ref|NP_465423.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes EGD-e] gi|224501301|ref|ZP_03669608.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes FSL R2-561] gi|16411352|emb|CAC99977.1| dinG [Listeria monocytogenes EGD-e] Length = 928 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +K+ P F + + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L + + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161 >gi|118471901|ref|YP_888535.1| hypothetical protein MSMEG_4259 [Mycobacterium smegmatis str. MC2 155] gi|118173188|gb|ABK74084.1| DNA polymerase III, epsilon subunit [Mycobacterium smegmatis str. MC2 155] Length = 672 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 96/223 (43%), Gaps = 28/223 (12%) Query: 9 KIVFDIETTGLDSKN-------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +V D+ETTG +K D I EIGAV++ + P GR P+ ++ Sbjct: 76 FVVVDLETTGGRAKATAPGGLCDAITEIGAVKVRGGEVLGE-LATLVDP-GRAIPPQIVE 133 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT ++D P ++ F +F + A +AHNA FD+GF+ A +R P Sbjct: 134 LTGITTAMVRDAPRIDAVLPMFLEF--ARGAVLVAHNAGFDIGFLRAAAERTQLTWPRP- 190 Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++ T+ +ARR L+ L + +G + + H AL D+ DV ++ Sbjct: 191 PVLCTVKLARRVLTRDEAPSVRLSELARLFGASTT--PTHRALDDARATVDVLHGLIERV 248 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 N G T D + +P+ + +R R + L Sbjct: 249 G--NQGVHTLADL-----RAYLPDTTPAQRR----NRALADGL 280 >gi|47096482|ref|ZP_00234074.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a F6854] gi|254899404|ref|ZP_05259328.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes J0161] gi|254912457|ref|ZP_05262469.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818] gi|254936784|ref|ZP_05268481.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900] gi|284802344|ref|YP_003414209.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5578] gi|284995486|ref|YP_003417254.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5923] gi|47015135|gb|EAL06076.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a F6854] gi|258609379|gb|EEW21987.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900] gi|284057906|gb|ADB68847.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5578] gi|284060953|gb|ADB71892.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 08-5923] gi|293590439|gb|EFF98773.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818] Length = 928 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +K+ P F + + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L + + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161 >gi|269794889|ref|YP_003314344.1| exonuclease, DNA polymerase III subunit epsilon family [Sanguibacter keddieii DSM 10542] gi|269097074|gb|ACZ21510.1| exonuclease, DNA polymerase III, epsilon subunit family [Sanguibacter keddieii DSM 10542] Length = 616 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 16/212 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +++ +V D+ETTG SK+ I EIGAV++ FQ + P G + Sbjct: 55 TPLSEVTFVVVDLETTGGSSKDAGITEIGAVKVRGGEVIGE-FQSLVNP-GHPVPAFIAR 112 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT + PS + F +F + +AHNA FD+ F+ A + ++ + Sbjct: 113 LTGITTLMVSSAPSIELVLPSFLEF--ARGTVLVAHNAPFDISFLKAAARSMDLAW-PGN 169 Query: 122 RIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +++DT+ +ARR + + + L +L + TI+ H AL D+ DV + Sbjct: 170 QVLDTVPLARRVVTRDEAPNHKLGTLAALFRATIT--PDHRALSDARATVDVMHAL--FD 225 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 G ED T P + ++R + Sbjct: 226 RMAPLGITHLEDLATA----TDPVPADVRRRR 253 >gi|119945580|ref|YP_943260.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] gi|119864184|gb|ABM03661.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] Length = 204 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 9/174 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 ++FD ETTGL K DR IEIGAV + + R FQ + P G + S GI++ Sbjct: 7 IVIFDFETTGLSPKMGDRPIEIGAVRIKNGLLVER-FQALMHP-GIRISSFIENFTGISN 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L + + + F DF N +AHNA FD F++AEL RI++ +I ++ Sbjct: 65 KMLAEAKPCAEVMGRFCDFIGSDN--LVAHNASFDKRFLDAELHRISRGY--SGQISCSM 120 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +ARR + L +L I H AL DS + ++V++ M+ Q Sbjct: 121 LLARRVLRDAPNHKLGTLVDYLNIQTEG-VYHRALFDSEMTANVWLAMINKIQQ 173 >gi|266619696|ref|ZP_06112631.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] gi|288868749|gb|EFD01048.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] Length = 264 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG+ + D IIEI A+++ ++ + TF + P R A K++GITDE Sbjct: 58 YVVFDLETTGISAVKDDIIEISALKVKNHEQV-ETFSRLVNP-RRPIPAGATKVNGITDE 115 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ +P I EF DF + + I HN FD+ F+N + + + + IDTL Sbjct: 116 MVQSEPGLEFILPEFLDFIDGE--ILIGHNIQSFDLLFLNRAADEVCRKAVL-NDFIDTL 172 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR P SR+ L L + I S H A D + Y M Sbjct: 173 FMARALLPGLSRHRLTDLADYFKI--SSEGAHRAFNDCVMNQICYEHM 218 >gi|224500250|ref|ZP_03668599.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes Finland 1988] gi|254831500|ref|ZP_05236155.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 10403S] Length = 928 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +K+ P F + + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L + + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161 >gi|31747869|gb|AAN10194.1| DNA polymerase III epsilon subunit [Candidatus Fritschea bemisiae] Length = 249 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 103/235 (43%), Gaps = 17/235 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K + FD E+TGLD + DRIIEI A++ + + + + + P E Sbjct: 1 MGLLKKEIFVCFDCESTGLDPEKDRIIEIAAIKFSFNAIID-SIEDLINPET-LIPQETT 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLD 119 ++H ITDE ++ P + + + DF E + + H FD+ + AE +R L Sbjct: 59 RIHHITDEMVQKSPKINEVIQSYLDFIGE--SIVVGHGIPFDLALLEAEAKRAGVPSRLL 116 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R +DTL +AR S N L SL K + I + H A+ D + DV+ + Sbjct: 117 NQRYLDTLRLARLYGESPTNSLESLRKHFNIQ--GINAHRAMSDVLVNIDVFKYL----- 169 Query: 180 QINFGFKTNEDRFFK-EEKKTVPNISLLKRDKPLFTRITKEELDE--HDKTIQTL 231 + GF T E+ F K E+ + + L K F I E L H Q L Sbjct: 170 --SQGFNTVEELFKKLEKPIALRAMPLGKHKGRSFREIPTEYLKWACHQNFDQDL 222 >gi|288819191|ref|YP_003433539.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus TK-6] gi|46849522|dbj|BAD17850.1| putative DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus] gi|288788591|dbj|BAI70338.1| DNA polymerase III epsilon subunit [Hydrogenobacter thermophilus TK-6] gi|308752773|gb|ADO46256.1| DNA polymerase III, epsilon subunit [Hydrogenobacter thermophilus TK-6] Length = 191 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG D ++ IIEI V ++ F + P G +KL GIT+ Sbjct: 10 FVSIDIETTGFDEESSDIIEIACVR-VEGCIITDRFSTLVNP-GYLLPDRIVKLTGITNA 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + KP+ + F F ++ + H+ + D+ FI+ + + I TL+ Sbjct: 68 MIVGKPNIYEVLPHFLRFVG--DSIIVGHHVEKDMAFIDKAYRVLYGKKF-KHPHICTLN 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR P R L L + I R H AL D+ + ++I+++ Sbjct: 125 LARNILPDLKRYSLKDLADHFNIRY--RRLHRALDDAETTAYLFIELL 170 >gi|113970108|ref|YP_733901.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4] gi|113884792|gb|ABI38844.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4] Length = 229 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 16/208 (7%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL + R IEIGAV + T R F + P G + + GI+++ Sbjct: 31 VVLDFETSGLSPNQGARAIEIGAVLIEQGQITAR-FSELMNP-GFRINSFIEDYTGISNQ 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + F F + +AHNA FD F++AE +I P + +L Sbjct: 89 MLAHAAPCAEVMARFAAFIGKH--HLVAHNAAFDQRFLDAEFAQIGHHY--PGQFGCSLL 144 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR +P + + L +L + + S + H AL D+ + ++++M+ Q G+ Sbjct: 145 LARRLYPEAINHQLATLVRHKQLP-SDGTFHRALADAEMTGHLWLRMLADLKQ---GYAI 200 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215 E F +K ++ K + P F R Sbjct: 201 TEPPFSLMQKI----MTKTKAEVPKFLR 224 >gi|90415683|ref|ZP_01223617.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] gi|90333006|gb|EAS48176.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium HTCC2207] Length = 528 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 9/167 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++ D+ETTG + + RIIEIG + +++ K +Q F+ P P KL GI Sbjct: 23 KMVLLDLETTGGKATHHRIIEIGLL-VIEQGKVLERWQSFVDPETV-LPPFIQKLTGIAP 80 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L+ P FS + + N++ +AHNA+FD GF+ E QRI ++ + ++ Sbjct: 81 SMLRGAPLFSEVAETLLTYLNDR--TLVAHNARFDYGFLKNEFQRIGISY--NAKPLCSV 136 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +R +P R+ L+ + KR+ + I +R H AL D+ ++ ++K Sbjct: 137 KFSRSLYPQFKRHGLDQIIKRFQLPIENR--HRALDDAEMIQRFFLK 181 >gi|158313649|ref|YP_001506157.1| hypothetical protein Franean1_1813 [Frankia sp. EAN1pec] gi|158109054|gb|ABW11251.1| DNA polymerase III, epsilon subunit [Frankia sp. EAN1pec] Length = 603 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 80/210 (38%), Gaps = 17/210 (8%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + + +V D+ETTG I EIGAV + + P+ L Sbjct: 24 LSDLTFVVVDLETTGGSPATSEITEIGAVRVRGGQILGE-MSSLVRPS-APIPAFISVLT 81 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + P + F +F + A +AHNA FD+GF+ A P Sbjct: 82 GITGAMVATAPGIGEVVPTFLEF--ARGAVLVAHNAPFDLGFLRAAATACGY-PAPAWEH 138 Query: 124 IDTLSIARRKHPSSRND---LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ IARR L+SL +G + + H AL D+ DV + Sbjct: 139 LDTVRIARRVISRDETRDCRLSSLAALFG--SATQPNHRALADARATVDVLHGL--FERL 194 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 N G T ED + +S +R K Sbjct: 195 GNLGVTTIEDLH-----EYSARVSPAQRRK 219 >gi|254827216|ref|ZP_05231903.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165] gi|258599599|gb|EEW12924.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165] Length = 928 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +K+ P F + + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L + + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161 >gi|46908132|ref|YP_014521.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes serotype 4b str. F2365] gi|46881402|gb|AAT04698.1| ATP-dependent helicase DinG [Listeria monocytogenes serotype 4b str. F2365] Length = 928 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +K+ P F + + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L + + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161 >gi|229061173|ref|ZP_04198523.1| DNA polymerase III alpha subunit [Bacillus cereus AH603] gi|228718044|gb|EEL69684.1| DNA polymerase III alpha subunit [Bacillus cereus AH603] Length = 318 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 19/208 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P + +IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A++ + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQKC----------AAV 174 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215 E+ K K+ + ++ + K + R Sbjct: 175 EEEGKRKANKEVLDETAVFEAVKEMLVR 202 >gi|254852803|ref|ZP_05242151.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503] gi|300763791|ref|ZP_07073788.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017] gi|258606130|gb|EEW18738.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503] gi|300515527|gb|EFK42577.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017] Length = 928 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +K+ P F + + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L + + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161 >gi|15606258|ref|NP_213636.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5] gi|6014995|sp|O67074|DPO3E_AQUAE RecName: Full=DNA polymerase III subunit epsilon gi|2983450|gb|AAC07031.1| DNA polymerase III epsilon subunit [Aquifex aeolicus VF5] Length = 202 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 15/179 (8%) Query: 6 KMR-------KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 KMR +V D+E TG D + +I++ AV ++ F + P G Sbjct: 9 KMRDNLLDGTFVVIDLEATGFDVEKSEVIDLAAVR-VEGGIITEKFSTLVYP-GYFIPER 66 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 KL GIT+ L +P+ + EF +F + + H + D+ FIN ++ Sbjct: 67 IKKLTGITNAMLVGQPTIEEVLPEFLEFVGDN--IVVGHFVEQDIKFINKYTKQYRGKKF 124 Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + + TL +AR+ P + L + + +G H AL D+ L ++++IK++ Sbjct: 125 -RNPSLCTLKLARKVFPGLKKYSLKEIAENFG--FETNGVHRALKDATLTAEIFIKILE 180 >gi|226224503|ref|YP_002758610.1| ATP-dependent helicase [Listeria monocytogenes Clip81459] gi|254825606|ref|ZP_05230607.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194] gi|225876965|emb|CAS05674.1| Putative ATP-dependent helicase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293594849|gb|EFG02610.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194] gi|328466248|gb|EGF37405.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes 1816] Length = 928 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +K+ P F + + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L + + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161 >gi|300856800|ref|YP_003781784.1| putative DNA polymerase III [Clostridium ljungdahlii DSM 13528] gi|300436915|gb|ADK16682.1| predicted DNA polymerase III [Clostridium ljungdahlii DSM 13528] Length = 362 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 11/179 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGLD +ND+I+EIGAV+ D +T++ F + P+ + K++GI D Sbjct: 61 FVALDFETTGLDYRNDKIVEIGAVKYKDEKETDK-FHFLINPHIH-IPEKITKINGIEDS 118 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD PS + + + DF N + HNA+FD+ F++ + + +IDTLS Sbjct: 119 MVKDSPSINEVIPKLIDFMG--NLPIVVHNARFDIDFLDENMSDNKYR---GNSVIDTLS 173 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 I+R+ + + L ++ I + + H A+ D+ + +++Y+K G I + Sbjct: 174 ISRKMFENIDNHRLQTIKDYLKIDL---NSHRAIDDAKVAAEIYLKYCREGYPIKKDYD 229 >gi|331084769|ref|ZP_08333857.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410863|gb|EGG90285.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 238 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 97/228 (42%), Gaps = 18/228 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI+ + FD+ETTGL + D IIEIGAV++ D T+R F FL P + SP Sbjct: 1 MIKT----YVAFDLETTGLSEERDSIIEIGAVKVTDGKVTDR-FMEFLKP-AEEISPMIT 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++ GIT+E + + ++ +F F E+ + HN FD F+ + Sbjct: 55 QITGITNEMVAHARNTKAVIDDFMGFCGEE--VLLGHNILFDYKFMKRYACKYQHSF--E 110 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R IDTL IAR+ H L +LC Y I + H A D+ + +Y + Sbjct: 111 RRGIDTLKIARKVHKDLESRSLEALCAHYQIKND--AAHRAYHDALATAKLYHCLGHYFE 168 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF----TRITKEELDE 223 + E F++ +K P KR E+L+ Sbjct: 169 EKEPNLFVPEPLFYQ-PRKEQPATEKQKRYLEKLCGWHRIAVPEDLEA 215 >gi|163784927|ref|ZP_02179686.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159879804|gb|EDP73549.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 206 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 7/176 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + N+ ++ D+ETTGL + N+ +IE+ A++ ++ P + + Sbjct: 5 LTVNEATFVIIDLETTGLSASNNSVIEVAAIKYQSGMIIDQ-LHHLTKPRENFIPSKVIN 63 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT+ + DKP F I+ E ++F +++ +AHNAKFD+ F++ + + K+ L Sbjct: 64 LTGITNAMVIDKPYFEDIYPEVYNFL--KDSIVVAHNAKFDISFLSEVHKIVFKNNLRLH 121 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 I T ++ARR P + L+SL GI + KH AL D+ + M+ Sbjct: 122 -YICTDNLARRIFPEIQKKSLSSLTNYLGINF--KQKHRALSDAQATLQAFQTMLE 174 >gi|320449814|ref|YP_004201910.1| DNA polymerase III subunit epsilon [Thermus scotoductus SA-01] gi|320149983|gb|ADW21361.1| DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01] Length = 637 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 14/169 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 FD+ETTGLD + D II +GAV +L + + F+ + P GR + ++HG+T Sbjct: 453 YTAFDLETTGLDPEKDAIIALGAVHILGKTVLRHEVFEALVNP-GRPIPKASTEVHGLTW 511 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E LK+KP + F F ++ +AHN FD+ F+ +R+ +D ++DTL Sbjct: 512 EMLKEKPKLEEVLPGFRLFL--EDTVLLAHNGAFDMAFL----RRVG---IDQPPLVDTL 562 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ P + + L +L +R+G+ + R H AL D+ + ++V+ M+ Sbjct: 563 LLSYLLFPDLQDHRLETLAERFGVPVIGR--HTALGDALMTAEVFAGMV 609 >gi|310828723|ref|YP_003961080.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612] gi|308740457|gb|ADO38117.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612] Length = 461 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 8/183 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTGLD N+ IIEIGA+++ D + + +F+ F+ P + + GIT+ Sbjct: 146 YVMVDVETTGLDPSNNEIIEIGALKITDGNVID-SFKTFVKP-INSIPSKITSITGITNN 203 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA-ELQRINKDPLDPSRIIDTL 127 + D PS ++ EF F ++ + +N FD+ F++ + ID L Sbjct: 204 MVADAPSIKTVLMEFKSFLSDN--YIVGYNVLFDIKFLHDSYYKNFGNCDWLSHDYIDVL 261 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 R+ S + L ++ I + + H AL D + + Y + N F+ Sbjct: 262 RFCRKYFKSAPNHKLTTMIDYLNIDV--KEHHRALADCYATLECYNNCKERALKENIRFE 319 Query: 187 TNE 189 N Sbjct: 320 LNS 322 >gi|89901349|ref|YP_523820.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118] gi|89346086|gb|ABD70289.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118] Length = 476 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 86/167 (51%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG + +DRI EI AV + + + R + + P G SP L GI++ Sbjct: 5 YVLLDLETTGGNPVHDRITEIAAVRIENGQEVAR-WSTLVNP-GCSISPFIQHLTGISNA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F ++ + A +AHN +FD GF+ EL R+ D + + T+ Sbjct: 63 MVRGAPGFETVAQHLLALLD--GAVLVAHNVRFDHGFLLNELARL--DVALRVKTLCTVR 118 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R +P + + L+++ +R+GI R H A+ D ++ ++++ Sbjct: 119 LSRLLYPQHKGHGLDAIMQRHGIRTLER--HRAMGDVEVM-QAWLQI 162 >gi|258511618|ref|YP_003185052.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478344|gb|ACV58663.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 952 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 8/180 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I+ D+ETTGLD + I+EIGA+ + + TF + P R E +L G++ Sbjct: 1 MEWIIVDLETTGLDPERAEILEIGALRVR-GGEIVDTFHTLVRPE-RPIPDEITRLTGLS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + PS F F H+ F+ F+ + R PL P + T Sbjct: 59 DADVAGAPSEREALMRFAGFAGH--TPMAGHHWVFERSFLLHRVARYGL-PLQPGDGLCT 115 Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 LS+AR P + L L +R + + H AL D+ + +++ ++ G Sbjct: 116 LSLARILAPRLMSHRLEYLARR--LRLRAEVSHRALADARTAHQLLMRLEEKARRLPSGV 173 >gi|254931930|ref|ZP_05265289.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262] gi|293583482|gb|EFF95514.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262] Length = 928 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +K+ P F + + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L + + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161 >gi|225180860|ref|ZP_03734308.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT 1] gi|225168341|gb|EEG77144.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT 1] Length = 269 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 9/168 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGI 65 R I+FD ETTG + D II I AV + + ++ F + P+ R L GI Sbjct: 77 RYIIFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPH-RSIPQAVCDLTGI 135 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD+ + DK S+ S+F DF ++ +AHNA+FD+ F+N +L + + + +ID Sbjct: 136 TDDMVADKCGICSVLSDFLDFIG--DSVLVAHNAEFDLAFLNIKLNWYTQTEI-YNPVID 192 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 T + R +P +DL++L + + + R +H AL DS + +++++ Sbjct: 193 TYKLGRALYPQLLSHDLDTLIRHHRVK--ERPRHTALGDSLMTAEIFL 238 >gi|163751714|ref|ZP_02158932.1| putative DNA polymerase III [Shewanella benthica KT99] gi|161328366|gb|EDP99525.1| putative DNA polymerase III [Shewanella benthica KT99] Length = 206 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 9/177 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M I+ D ETTGL + DR IEIGAV + D TFQ + P G + S Sbjct: 1 MTTPAADSVIILDFETTGLSPNQGDRAIEIGAVRIQDG-IVVDTFQELMNP-GFRVSGFI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 GI++ L + + + F DF N +AHNA FD F++AEL IN Sbjct: 59 AGYTGISNAMLANAAPCEEVMARFADFIGNHN--LVAHNASFDQRFLDAELDAINLSY-- 114 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ IARR + + L L + I H AL DS + + +++ M+ Sbjct: 115 GGEFACSMLIARRLYQDAPNHKLGGLVEYKQIENDG-VFHRALADSEMTAKLWLLML 170 >gi|332983437|ref|YP_004464878.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1 BON] gi|332701115|gb|AEE98056.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1 BON] Length = 296 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL+ D+I+EI AV+ Y + ++ + P G A K++ ITDE Sbjct: 122 FVAIDLETTGLNPAIDKIVEIAAVKFK-YGEIIDSYTTLINP-GIHIPSSASKINHITDE 179 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S + +F ++ + HNA FD+ F+ ++ D +P IDTL Sbjct: 180 TVHGAPDLSEVLPNLLNFIG--DSILVMHNASFDLKFLKYHAAKLGYDISNPF--IDTLP 235 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ L ++ I+ + + H A D+ + V IK + Sbjct: 236 TCKKLFTDFENYQLATVANYLKISTAD-TFHRACNDAEICGPVLIKCI 282 >gi|117928176|ref|YP_872727.1| hypothetical protein Acel_0968 [Acidothermus cellulolyticus 11B] gi|117648639|gb|ABK52741.1| DNA polymerase III, epsilon subunit [Acidothermus cellulolyticus 11B] Length = 566 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 84/231 (36%), Gaps = 23/231 (9%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +V D+ETTG I E+ AV++ Q + P GR P Sbjct: 19 TPLRDVTFVVVDLETTGGAPGTGAITELAAVKVRGGEVLGE-LQTLVNP-GRPIPPFITV 76 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD + P ++ F +F + +AHNA FDVGF+ A D Sbjct: 77 LTGITDAMVAPAPPIDAVLPTFLEF--ATGSVLVAHNAPFDVGFLRAACAAAGYDW-PEF 133 Query: 122 RIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++DT +ARR + + L +L + + + H AL D + DV ++ Sbjct: 134 EVLDTARLARRVLTREEAPNCTLATLARVFRAKTT--PNHRALADVYATIDVLHGLLERL 191 Query: 179 SQINFGFKTN-------------EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 G + + R E P + L + + + Sbjct: 192 GSFGVGSLADVRTFSAKVTATQRQKRHLAERLPHAPGVYLFRDRQGRVLYV 242 >gi|229134413|ref|ZP_04263226.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196] gi|228649034|gb|EEL05056.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196] Length = 318 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 19/208 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P + +IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A++ + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQKC----------AAV 174 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215 E+ K K+ + ++ + K + R Sbjct: 175 EEEGKRKANKEVLDETAVFEAVKEMLVR 202 >gi|238062933|ref|ZP_04607642.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149] gi|237884744|gb|EEP73572.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149] Length = 286 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 ++ +V D+ETTGL S +DRI+EI V ++ + + + P GR P +H I Sbjct: 34 EVPFVVVDVETTGLSSTSDRIVEIALVR-IEGGRVVDEWATLVDP-GRDPDPTF--VHHI 89 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E L P+F+ + E + A +AHNA+F+ GFI E R+ P + Sbjct: 90 TAEMLSGAPTFADVAGEILSRLD--GAVVVAHNARFEEGFIAQEFARVGISTA-PLPAVC 146 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 TL +AR+ + L S C YGI + H AL D+ + + Sbjct: 147 TLRLARQVLAAPNFQLVSCCTVYGIEL--HDAHTALGDTRATAQLL 190 >gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] Length = 327 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 11/198 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T + Sbjct: 23 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSD 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I EF + + +AHNA FD I E R + S+ + T+ Sbjct: 79 ALEGAPLFQDIADEFSSRLDGR--VLVAHNAVFDWQMIAREYARAGRVA-PVSQRLCTIV 135 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + L SL +G+ + H AL D+ +L++ + + + + Sbjct: 136 LSKELGLPLPNHKLESLAAHFGVV--QQRAHHALDDARVLAEAFRPSLRAAAARSVRLPL 193 Query: 188 NEDRFFKE-EKKTVPNIS 204 +E R E + VP S Sbjct: 194 HECRPLTEWTDRAVPRQS 211 >gi|320353730|ref|YP_004195069.1| DNA polymerase III, subunit epsilon [Desulfobulbus propionicus DSM 2032] gi|320122232|gb|ADW17778.1| DNA polymerase III, epsilon subunit [Desulfobulbus propionicus DSM 2032] Length = 218 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTG + DR IE+GAV +++ + FQ + P G S +L GI+++ Sbjct: 7 IVLDFETTGHSPNRGDRPIEVGAVR-IEHDRIVDRFQALMNP-GFTISWFIERLTGISND 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + + F D+ + +AHNA FD F++AEL I + + + T+ Sbjct: 65 LIAHAPPCEEVMNRFADWMG--DLPLVAHNAGFDRAFLDAELALIGRH--QSNPMACTVL 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +RR P S + L +L GI + + H AL D+ + V+I M Sbjct: 121 ASRRLFPESPNHKLATLVNHLGI-FTDGTFHRALADAEMTGHVWIAMT 167 >gi|56420711|ref|YP_148029.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus kaustophilus HTA426] gi|56380553|dbj|BAD76461.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426] Length = 909 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 15/218 (6%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D+ETTG K DRII++G + D R F F P + +L I Sbjct: 4 RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE-QPIPLFIQQLTNIN 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E ++ P F+ E A ++AHN FD+ F+ AEL+R P IDT Sbjct: 62 EEMVEGAPLFADKAGEIAALM--HGAYFVAHNVDFDLPFLQAELERAGWPPFS-GPTIDT 118 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + +AR P+ L L ++ G + H H A D+ + + ++I ++ S++ Sbjct: 119 VELARIVLPTAESYKLGDLARQLG--LHHNRPHQADSDAEVTAKLFIALLKRLSRLPL-M 175 Query: 186 KTNEDRFFKEEKKT-----VPNISLLKRDKPLFTRITK 218 + R K+ + + KR+K R Sbjct: 176 TLEQLRGLARHLKSDIYLLLDAVIAKKRNKAPADRAVA 213 >gi|288922213|ref|ZP_06416412.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f] gi|288346447|gb|EFC80777.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f] Length = 565 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 91/236 (38%), Gaps = 29/236 (12%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + + +V D+ETTG I EIGAV++ + P L Sbjct: 24 LSDLTFVVVDLETTGGSPATSEITEIGAVKVRGGQVLGE-MSSLVR-ASTPIPPVVSVLT 81 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD L P+ + F +F + A +AHNA FD+GF+ A Q P+ Sbjct: 82 GITDSMLATAPTLDEVVPTFLEF--SRGAVLVAHNAAFDLGFLRAAAQACGY-PVPAWEH 138 Query: 124 IDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ IARR + + L SL +G H AL D+ V + Sbjct: 139 LDTVLIARRVVTRDEAPNCRLASLATLFGSPTE--PNHRALADARATVAVLHGL--FERL 194 Query: 181 INFGFKTNED---------------RFFKEEKKTVPNISLLK--RDKPLFTRITKE 219 N G T ED R ++ T P + + + D+PL+ ++ Sbjct: 195 GNLGVTTLEDVREYSARVSPAQRRKRHLADDLPTGPGVYVFRDGADRPLYVGTSRS 250 >gi|149915092|ref|ZP_01903620.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. AzwK-3b] gi|149810813|gb|EDM70652.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. AzwK-3b] Length = 481 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 90/169 (53%), Gaps = 7/169 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 + FD ETTGL ++ D ++++GAV +L+ T ++ P GR P + ++H +TD Sbjct: 277 FVAFDTETTGLSAQTDDVVQLGAVRVLNGRVVPGETLDTYVNP-GRPIPPASTEIHRVTD 335 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ F ++ F F ++A +AHNA FD+ F++ R+ + P ++DT+ Sbjct: 336 GHVRGASDFVTVGRNFHHF--ARDAVLVAHNAPFDLAFLHRFADRMGVEWTHP--VLDTV 391 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ + ++ L++LC R ITI +H A D+ ++ ++++ Sbjct: 392 LLSAVVFGTTEQHSLDALCDRLAITIPDNLRHTAFGDAQATAEALVRLI 440 >gi|229168326|ref|ZP_04296051.1| DNA polymerase III alpha subunit [Bacillus cereus AH621] gi|228615152|gb|EEK72252.1| DNA polymerase III alpha subunit [Bacillus cereus AH621] Length = 318 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 19/208 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P + +IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A++ + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQKC----------AAV 174 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215 E+ K K+ + ++ + K + R Sbjct: 175 EEEGKRKANKEVLDETAVFEAVKEMLVR 202 >gi|116873334|ref|YP_850115.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742212|emb|CAK21336.1| ATP-dependent helicase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 928 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYSTFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + +K+ P F + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 IAPKDVKNAPLFEDVAPIIASLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L +G + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHRADSDAEVTAD 161 >gi|50365104|ref|YP_053529.1| DNA polymerase III alpha subunit [Mesoplasma florum L1] gi|50363660|gb|AAT75645.1| DNA polymerase III alpha subunit [Mesoplasma florum L1] Length = 1493 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 97/178 (54%), Gaps = 11/178 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEA 59 IR++KM +VFD+ETTGL + + IIE GAV T +T + P + Sbjct: 435 IRESKM--VVFDLETTGLSPEFNEIIEFGAVVF--DPVTGKTTKYDYLFKPK-QPLKQFT 489 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + L IT E L+DK + F + ++ +++ +AHNA FD F+N+ +R+ L Sbjct: 490 IDLTNITPEMLEDKKNIDDDFDKIYELI--KDSILVAHNANFDFNFLNSLSKRLGYGDL- 546 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + +IDTL+++R P+ + + L ++CK++GI H D+ +L+D++ K++ Sbjct: 547 QNTVIDTLTLSRLVRPALKSHRLGAVCKKFGILYDEHVAHRGDYDADVLNDLFFKIIA 604 >gi|34496475|ref|NP_900690.1| DNA-directed DNA polymerase III subunit epsilon [Chromobacterium violaceum ATCC 12472] gi|34102328|gb|AAQ58694.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Chromobacterium violaceum ATCC 12472] Length = 481 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 94/196 (47%), Gaps = 13/196 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + DRI E+G V L+D + R + P G+ P + GI++E Sbjct: 7 AIIDLETTGGNIARDRITEVGMV-LIDGERVER-LSWLVNP-GQPIPPFIENMTGISNEM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P FS+ E D Q +AHNA+FD GF+ E +R +R + T+ + Sbjct: 64 VAGAPPFSAQADELLDRL--QGRLLLAHNARFDYGFLKNEFRRHGLRF--QARALCTVKL 119 Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +RR +P ++ L+SL R+GI + R H AL D+ VY + + +++ + Sbjct: 120 SRRLYPQHFKHSLDSLIARHGIDMPER--HRALADAEA---VYRFIRIAEAELGEDRVAH 174 Query: 189 EDRFFKEEKKTVPNIS 204 E + + ++ Sbjct: 175 EAAQLLSQPAELSSLP 190 >gi|152975987|ref|YP_001375504.1| DNA polymerase III subunit epsilon [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024739|gb|ABS22509.1| DNA polymerase III, epsilon subunit [Bacillus cytotoxicus NVH 391-98] Length = 299 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 9/165 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG NDRII++ AV ++ ++ F F+ P R L GIT+ Sbjct: 10 YVVIDFETTGFHPYNDRIIQVAAVRYRNHELADQ-FVSFVNPE-RSIPSRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F N +AHNA FD+ F+ + + R +++IDT+ Sbjct: 68 RVSDAPTVQEVLPLFLAFLG--NDTIVAHNASFDMRFLKSNMSRFQLGE-PNNKVIDTVL 124 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +A++ + N L +L + GI +S H AL D + VY Sbjct: 125 LAKKYMKHAPNFKLETLKRMLGIRLS---SHNALDDCITCAAVYQ 166 >gi|307717390|gb|ADN88748.1| DNA polymerase III [Listeria welshimeri] Length = 231 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 11/195 (5%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F ++ + +AHNA FD+GFIN +++ + D + ++DTL +AR Sbjct: 59 SDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAD-NAVVDTLELARF 115 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ---INFGFKTN 188 +P + LN+L K++ I + H A+ D+ + + K++ + INF N Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHDINFHDSLN 173 Query: 189 EDRFFKEEKKTVPNI 203 + E K Sbjct: 174 DYMGEGEAYKRARPF 188 >gi|325843612|ref|ZP_08168008.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sp. HGF1] gi|325489298|gb|EGC91675.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sp. HGF1] Length = 1528 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 31/220 (14%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I N +V+D+ETTG + D IIEI AV++ + + + F F P+ RK S + ++ Sbjct: 426 IPLNDATYVVYDVETTGFSTNYDVIIEIAAVKIKNGTIIDE-FSDFANPH-RKLSLKTIE 483 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L I + + P + F ++ ++ +AHNA FD+G + +R N + + Sbjct: 484 LTHILQSDVDNAPELEDVMKRFKEW--SEDCILVAHNAAFDMGHLEQTYKRFNLG-VCDN 540 Query: 122 RIIDTLSIARRKH----------------------PSSRNDLNSLCKRYGITISHRSKHG 159 ++DTL++AR + R +L +L K + + ++ H Sbjct: 541 PVLDTLALARVLYHHQYGVYWNYATDATIDEKFKRKMKRFNLKALSKFFKVDLTQH--HR 598 Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199 A+ D+ +I M+ + KT+++ +K+T Sbjct: 599 AIYDARATGQAFILMLR--DILKLDIKTHDEVNQLVDKET 636 >gi|28210814|ref|NP_781758.1| DNA polymerase III subunit epsilon [Clostridium tetani E88] gi|28203252|gb|AAO35695.1| DNA polymerase III alpha subunit [Clostridium tetani E88] Length = 380 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 99/245 (40%), Gaps = 36/245 (14%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL D+IIEI A++ + + + P A +++ IT+ Sbjct: 84 FVVIDLETTGLYPVTDKIIEITAIKYKSGQIVEK-YNTLINPKI-NIPKRATEINNITNN 141 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + E F E +AHNA FD+ F+NA L IN++ + IDTL Sbjct: 142 MVKDSPVIEDVLPELLKFIKE--YPLVAHNASFDIKFLNANLALINREI--KNVAIDTLQ 197 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R + + L ++ + I S + H AL D +++Y+ + F Sbjct: 198 LSRAMYTFLPNHKLTTIKEHLCI--SEDNSHRALPDCITTAEIYLDYCYKANNNLKEFNE 255 Query: 188 NEDRFFKEEKKTVP---------------------------NISLLKRDKPLFTRITKEE 220 E FK K + I + R + T I EE Sbjct: 256 LEKACFKVIKDMLNKNNRDTEFLKLKHTGNYTDIAYFYPLVRIKVGDRKQYFLTNIPLEE 315 Query: 221 LDEHD 225 L EH+ Sbjct: 316 LKEHE 320 >gi|94312850|ref|YP_586059.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34] gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans CH34] Length = 530 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG D++ DRI EIG VE+ + + + P P L GITDE Sbjct: 35 IVFVDLETTGADAQRDRITEIGVVEVGPDGI--QEWDTLVDP-LTSIPPFVQGLTGITDE 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +P+F+ I + Q ++AHNA+FD GF+ E +R + ++ TL Sbjct: 92 MVRGQPTFALIAEALAE--KLQGRLFVAHNARFDYGFLKNEFRRAGVTF--RADVLCTLR 147 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R PS R+ L++L R+G+T R H AL D+ LL + K+ Sbjct: 148 LSRSLFPSVERHGLDALIARFGLTPKGR--HRALADAELLWQFWQKI 192 >gi|260655785|ref|ZP_05861254.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1] gi|260629401|gb|EEX47595.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1] Length = 208 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 8/174 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGL ++ IIE+GA++ + K F + P G +HGITD+ Sbjct: 12 YVALDIETTGLSPRSCSIIEVGALKFVPGKK-GEEFSSLIDP-GCPIPASGRSIHGITDD 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +P + + DF A + HNA FD+ FI L ++ + + DTL Sbjct: 70 MVAGQPRVEEVIAGLLDFVGP--APLVLHNAPFDLSFIAPVLDKLGRKW-QAMTVFDTLP 126 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++R P R L SL + H AL D ++ + + Q+ Sbjct: 127 LSRVAFPGLRSYSLESLSDFF--EFKEGVHHRALCDCWYTQQLFTRFLEKVDQL 178 >gi|224826734|ref|ZP_03699834.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224600954|gb|EEG07137.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 707 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 12/204 (5%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALK 61 +++ VFD ETTGL+ D II+IGA +++ F+ + P R +++K Sbjct: 512 LSELSYTVFDTETTGLEPAAGDEIIQIGATRIVNRRLLQHEGFEQLIDP-RRPLPEDSVK 570 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT E L +P ++ F + + +AHNA FD+ F+ + P Sbjct: 571 IHGITPEMLAGQPPLDTVLPAFRAYCA--DTVLVAHNAAFDMRFLQLKEASTGVRFDQP- 627 Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL ++ HP + L ++ +R G+TI R H A+ D+ + +V++KM+ ++ Sbjct: 628 -VLDTLLLSAVLHPNQESHRLEAIAERLGVTIIGR--HTAMGDAIVTGEVFLKMIPLLAE 684 Query: 181 INFGFKTNEDRFFKEEKKTVPNIS 204 G +T + E+ I Sbjct: 685 --KGIRTLREAREASERTYYARIR 706 >gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14] Length = 328 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 11/196 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T E Sbjct: 23 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSE 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ I EF ++ +AHNA FD I E R ++ R + T++ Sbjct: 79 ALEGAPLFTDIAEEFAARLADR--VLVAHNAVFDWQMIAREYARARREAPVRQR-LCTIA 135 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + L SL +G+ R H AL D+ +L++ + + + Sbjct: 136 LSKELGLPLPNHKLESLAAHFGVV--QRRAHHALDDARVLAEAFRPSLWAAAAGGVRLPL 193 Query: 188 NEDRFFKE-EKKTVPN 202 E R E + VP Sbjct: 194 LECRPLTEWSDRPVPR 209 >gi|313124719|ref|YP_004034978.1| DNA polymerase iii polc-type [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281282|gb|ADQ62001.1| DNA polymerase III PolC-type [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 298 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 13/179 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL + D +IEIG + + + T+R ++ + P + L GIT+E Sbjct: 12 YCVLDTETTGLSAYYDEVIEIGILRVRNGEITDR-YEQLIKPEN-EIDGFITSLTGITNE 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + DKP+ + S+ F + HN FDV F+ A + +DT+ Sbjct: 70 MVADKPAIEDVKSDVLAFLGSD--IIVGHNTSFDVRFLAA-----GFHEDIANEYMDTMQ 122 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 AR+ +P + + L+ L + +T + H AL D ++Y M + G K Sbjct: 123 FARKLYPDLTHHRLSDLSEYLYLTNNE---HRALADCVTTEELYEAMKTEMIRKGLGIK 178 >gi|307717344|gb|ADN88725.1| DNA polymerase III [Listeria innocua] gi|307717350|gb|ADN88728.1| DNA polymerase III [Listeria innocua] gi|307717352|gb|ADN88729.1| DNA polymerase III [Listeria innocua] gi|307717386|gb|ADN88746.1| DNA polymerase III [Listeria innocua] Length = 231 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 92/171 (53%), Gaps = 8/171 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + +F ++ + +AHNA FD+GFIN +++ + + + ++DTL +AR Sbjct: 59 SDPIDVVLKQFREWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAN-NAVVDTLELARF 115 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +P + LN+L K++ I + H A+ D+ + + K++ +++ Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164 >gi|293374694|ref|ZP_06621002.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sanguinis PC909] gi|292646608|gb|EFF64610.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter sanguinis PC909] Length = 1528 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 31/220 (14%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I N +V+D+ETTG + D IIEI AV++ + + + F F P+ RK S + ++ Sbjct: 426 IPLNDATYVVYDVETTGFSTNYDVIIEIAAVKIKNGTIIDE-FSDFANPH-RKLSLKTIE 483 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L I + + P + F ++ ++ +AHNA FD+G + +R N + + Sbjct: 484 LTHILQSDVDNAPELEDVMKRFKEW--SEDCVLVAHNAAFDMGHLEQTYKRFNLG-VCDN 540 Query: 122 RIIDTLSIARRKH----------------------PSSRNDLNSLCKRYGITISHRSKHG 159 ++DTL++AR + R +L +L K + + ++ H Sbjct: 541 PVLDTLALARVLYHHQYGVYWNYATDATIDEKFKRKMKRFNLKALSKFFKVDLTQH--HR 598 Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT 199 A+ D+ +I M+ + KT+++ +K+T Sbjct: 599 AIYDARATGQAFILMLR--DILKLDIKTHDEVNQLVDKET 636 >gi|295135069|ref|YP_003585745.1| exonuclease family protein [Zunongwangia profunda SM-A87] gi|294983084|gb|ADF53549.1| exonuclease family protein [Zunongwangia profunda SM-A87] Length = 457 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + D K F + P R P + L GI +E Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKF-DGEKVVDQFISLINPE-RPIQPFVVGLTGINNE 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P F + + + +AHNAKFD + E +R+ + + + T+ Sbjct: 60 MLRNAPKFYEVAKRIVEI--TTDCIIVAHNAKFDYRILRTEFKRLGFEF--QRKSLCTVE 115 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++++ P L L + GI +S R H A D+ ++ KM++ Sbjct: 116 LSKKLIPDMPSYSLGKLVRALGIPLSDR--HRANGDAQATVKLF-KMLLA 162 >gi|325265145|ref|ZP_08131871.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5] gi|324029549|gb|EGB90838.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5] Length = 233 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTGL+ + + IIEIGA+++ D K F F+ P SP + L GIT+E Sbjct: 5 YIAFDLETTGLNPEQNEIIEIGALKVRDG-KVQERFMEFVRPT-ENISPVVMNLTGITNE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D S ++ +F DF + I HN FD F+ D IDTL Sbjct: 63 MVADARSSRNVIPDFLDFCGDD--ILIGHNVIFDYSFVKIGAMAEGLDF--ERAGIDTLK 118 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IAR+ H L LC Y I + + H A D+ + +Y + Sbjct: 119 IARKVHKDMESKSLGCLCDYYHIENN--AAHRAYHDALATAKLYQTL 163 >gi|255522480|ref|ZP_05389717.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes FSL J1-175] Length = 807 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +K+ P F + + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L + + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161 >gi|260587424|ref|ZP_05853337.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] gi|331083705|ref|ZP_08332816.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542291|gb|EEX22860.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583] gi|330403916|gb|EGG83468.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium 6_1_63FAA] Length = 236 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 10/203 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D+ETTGL+ DRIIEIGAV++ + + + P + +L GI+ Sbjct: 2 MEYVALDLETTGLEPSKDRIIEIGAVKVRNKEVVGE-YGTLINPQ-MEIPDRITELTGIS 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++ KP + E DF E + HN FD F+ + + + +DT Sbjct: 60 NDMVQGKPLIAQALGELLDFCEE--LPLLGHNLMFDYSFVKHQAVNAGM--VFEKKGMDT 115 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L +AR P L +L Y I + H AL D+ +Y ++ + Sbjct: 116 LKLARALLPELPSRSLQNLRMHYEIP--QKDAHRALEDARTTYLLYERLREEFEEKQPKL 173 Query: 186 KTNEDRFFKEEKKTVPNISLLKR 208 +K KK P + KR Sbjct: 174 FVPNALIYK-VKKQGPVTAAQKR 195 >gi|59713199|ref|YP_205974.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] gi|59481447|gb|AAW87086.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) [Vibrio fischeri ES114] Length = 212 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 9/169 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L + +R FQ + P G + SP GI++ Sbjct: 16 VVLDFETTGLSPNQGDRAIEIGAVKLENGVVVDR-FQGLMNP-GFRVSPFIENYTGISNR 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D S + +EF +F Q +AHNA FD F++ EL I ++ +L Sbjct: 74 MLADAASCDEVMNEFANFI--QGCNLVAHNASFDKRFLDGELALIQREY--DGDFACSLL 129 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++RR +S + L L + I H AL D+ + + +++ ++ Sbjct: 130 VSRRLTQEASSHKLGDLVAYHQIENDG-VFHRALADAEVTASLWLVLLE 177 >gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315] gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315] Length = 375 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 10/172 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ + D+ETTG S + RI EIG VE+ T+ + P G+ P +L Sbjct: 10 ASEQPLVFVDLETTGGSSADHRITEIGVVEI--GPLGVSTWTSLVNP-GQAIPPFIQQLT 66 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+D ++D P+F+S+ ++ + ++AHNA FD GF+ AE +R + Sbjct: 67 GISDAMVRDAPTFASLAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGLTFNPD--V 122 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + T+ ++R P SR+ L++L +R+G+ + ++H AL D+ LL + ++ Sbjct: 123 LCTVRLSRALFPRESRHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172 >gi|291287661|ref|YP_003504477.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] gi|290884821|gb|ADD68521.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] Length = 228 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 9/172 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ETTGLD + RII + AV++ ++ + + F+ P + E+++ H ITDE + Sbjct: 47 VIDTETTGLDLNDARIINVAAVKVQNFKIID-FYNSFINPET-EIPKESIQWHNITDEMV 104 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL--S 128 DKP+ + +F +F + ++ + H+ FD+ IN E+ ++ + +DT+ Sbjct: 105 ADKPTAGEVLPDFLNFVD--DSIIVGHHVTFDIKMINKEMMDSFSCQINNN-WLDTMLIY 161 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R L+ L Y +T + R H AL D+ ++V+ KM++ S+ Sbjct: 162 SHAIIKKDERYSLDYLLDLYNVTCNGR--HTALGDALATAEVFTKMIMQASR 211 >gi|313665237|ref|YP_004047108.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma leachii PG50] gi|312949309|gb|ADR23905.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma leachii PG50] Length = 1480 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 5/169 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + + FD+ETTGL + D IIE GA+E + + + + P K KL I + Sbjct: 432 KMVFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPK-AKLKDFTKKLTNINE 490 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L++KP F + ++A +AHNA FD F++ Q++ L+ + IIDTL Sbjct: 491 EMLENKPGIEVAFKQINQII--KDAILVAHNANFDYTFLSHWSQKLGYGKLE-NTIIDTL 547 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +I+R +P + + L SL KR I+ H D+ +L+D+Y +M+ Sbjct: 548 TISRIIYPELKSHRLGSLAKRVNISYDPSVAHRGDYDADILADIYERML 596 >gi|307717338|gb|ADN88722.1| DNA polymerase III [Listeria welshimeri] gi|307717340|gb|ADN88723.1| DNA polymerase III [Listeria welshimeri] gi|307717362|gb|ADN88734.1| DNA polymerase III [Listeria welshimeri] gi|307717368|gb|ADN88737.1| DNA polymerase III [Listeria welshimeri] gi|307717392|gb|ADN88749.1| DNA polymerase III [Listeria welshimeri] Length = 231 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 11/181 (6%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F ++ + +AHNA FD+GFIN +++ + D + ++DTL +AR Sbjct: 59 SDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAD-NAVVDTLELARF 115 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ---INFGFKTN 188 +P + LN+L K++ I + H A+ D+ + + K++ + INF N Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMHDINFHDSLN 173 Query: 189 E 189 + Sbjct: 174 D 174 >gi|326790794|ref|YP_004308615.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM 5427] gi|326541558|gb|ADZ83417.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM 5427] Length = 237 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 10/169 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +V DIETTG IIEIGAV ++ + + F + P + S + + GIT+ Sbjct: 3 KYVVVDIETTGAHPVQSEIIEIGAV-YIEEGQVKKIFNELVRPT-QIISDYIISITGITN 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDT 126 E + D P + F DF ++ I HN FD + + + +DT Sbjct: 61 EMVADAPPIEEVMPRFIDFC--EDVPLIGHNIILFDYRMLKTKATALGFTFEKMG--VDT 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L I+R+ L LC+ Y I++ + H A D+ +++ K+ Sbjct: 117 LVISRKMLAHLPSRKLGDLCEHYAISLEN--AHRAYHDAFATYELFEKL 163 >gi|89890830|ref|ZP_01202339.1| DNA polymerase III [Flavobacteria bacterium BBFL7] gi|89516975|gb|EAS19633.1| DNA polymerase III [Flavobacteria bacterium BBFL7] Length = 453 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EI + D + F + P ++ P +KL GI ++ Sbjct: 2 YAIVDVETTGGKFNEEGITEIAIYKF-DGHEIVDQFASLVNPE-KEIQPFVVKLTGINNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F + + Q +AHNA FD + E +R+ + ++ + T+ Sbjct: 60 MLARAPKFYEVAKRIIEIM--QGTVLVAHNANFDYRMLRIEFERLGYEF--HTQTLCTVE 115 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +A++ P L L + GI I+ R H A D+ ++ KM++ Sbjct: 116 LAQQLMPEEESYSLGKLTRSLGIPITDR--HRATGDALATVKLF-KMLMA 162 >gi|307717322|gb|ADN88714.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717324|gb|ADN88715.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717408|gb|ADN88757.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717412|gb|ADN88759.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] gi|307717418|gb|ADN88762.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii] Length = 231 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 8/171 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F ++ + +AHNA FD+GFIN +++ P + ++DTL +AR Sbjct: 59 SDPIEVVLQRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAKNAVVDTLELARF 115 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +P + LN+L K++ I + H A+ D+ + + K++ +++ Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164 >gi|307717346|gb|ADN88726.1| DNA polymerase III [Listeria innocua] gi|307717356|gb|ADN88731.1| DNA polymerase III [Listeria innocua] gi|307717358|gb|ADN88732.1| DNA polymerase III [Listeria innocua] gi|307717360|gb|ADN88733.1| DNA polymerase III [Listeria innocua] gi|307717374|gb|ADN88740.1| DNA polymerase III [Listeria innocua] gi|307717388|gb|ADN88747.1| DNA polymerase III [Listeria innocua] Length = 231 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 91/171 (53%), Gaps = 8/171 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + +F ++ + +AHNA FD+GFIN +++ + + ++DTL +AR Sbjct: 59 SDPIDVVLKQFREWSGDD--ILVAHNASFDMGFINTAYEKVGLEKA-KNAVVDTLELARF 115 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +P + LN+L K++ I + H A+ D+ + + K++ +++ Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164 >gi|298208469|ref|YP_003716648.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Croceibacter atlanticus HTCC2559] gi|83848392|gb|EAP86261.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Croceibacter atlanticus HTCC2559] Length = 457 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + + ++ + P R P + L GI ++ Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGHEVVDQVIS-LVNPE-RPIQPFVVGLTGINND 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P F I + Q+ +AHNAKFD + E +R+ + + ++ Sbjct: 60 MLRNAPKFYEIAKRILEI--TQDCILVAHNAKFDYRILRTEFRRLGYE--YERETLCSVE 115 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++++ P L L K GI IS R H A D+ ++ ++ Sbjct: 116 LSKKLLPGHASYSLGKLTKALGIPISSR--HRADGDAIATVKLFKLLL 161 >gi|217963949|ref|YP_002349627.1| DnaQ family exonuclease/DinG family helicase [Listeria monocytogenes HCC23] gi|217333219|gb|ACK39013.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria monocytogenes HCC23] gi|307571481|emb|CAR84660.1| ATP-dependent helicase [Listeria monocytogenes L99] Length = 928 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +K+ P F + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKNAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L + + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161 >gi|154246367|ref|YP_001417325.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] gi|154160452|gb|ABS67668.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] Length = 719 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 10/178 (5%) Query: 9 KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 VFD ETTGLD D I++IGA +++ + F + P R + +HGI Sbjct: 529 YTVFDTETTGLDPAGGDEILQIGATRIVNGRLLASECFDQLVDPQ-RSIPEAGIAVHGIR 587 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++ KP+ + F F + + HN FD+ F+ + P ++DT Sbjct: 588 PEMVRGKPTLPQVLPAFHAF--AADTVLVGHNVAFDMRFLTLKENASGVRFDQP--VLDT 643 Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 L +A HP + L ++ R GI +S R H AL D+ +++++K++ Q Sbjct: 644 LLLAAIVHPGEDSHGLEAMAARLGIAVSGR--HTALGDALATAEIFLKLLPLLRQRGI 699 >gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC 10712] Length = 330 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 10/200 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ L + + P P + +HG+T + Sbjct: 21 YAVVDVETTGL-ARDDRIVSAAVYRLDAQGNVEDHWYTLVNPER---DPGPVWIHGLTTD 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F I +EF + + +AHNA FD I E R + + T++ Sbjct: 77 VLAGAPLFPEIAAEFAARLDGR--VLVAHNAMFDWQMIAREYARAE-SAAPVRQRLCTIA 133 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P + L SL +G+ + H AL D+ +L++ + + ++ N Sbjct: 134 LAKELSLPLPNHKLESLAAHFGVV--QQRAHNALDDARVLAEAFRPSLHAAAERNVRLPL 191 Query: 188 NEDRFFKEEKKTVPNISLLK 207 E R E + + + Sbjct: 192 LECRPLTEWASSSERPRIGQ 211 >gi|326407708|gb|ADZ64779.1| DNA polymerase III subunit alpha, Gram-positive type [Lactococcus lactis subsp. lactis CV56] Length = 1638 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 8/183 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + ++ +I+I A ++ + + F F+ P G + S +L GITD+ Sbjct: 596 YVVFDVETTGLSAVHNDLIQIAATKMHKGNPIDE-FDEFINP-GYRLSEFTTELTGITDD 653 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ + ++F F + +AHNA FDVGF+N R P+ ++DTL Sbjct: 654 HVKNAKPLYEVLTKFQKFC--EGTILVAHNATFDVGFMNMNYSRNGL-PIITQPVVDTLE 710 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR +P R L L K++ I + + H A D+ + + N G+ + Sbjct: 711 FARNLYPEMKRFGLGQLTKKFQIGLEYH--HMANFDAEATGRLLFVFLEELRTRNTGWTS 768 Query: 188 NED 190 + Sbjct: 769 LLE 771 >gi|310287853|ref|YP_003939111.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17] gi|309251789|gb|ADO53537.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17] Length = 180 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG+ D IIE GAV+++D + T+Q + P R +P +L GIT + Sbjct: 11 YVVLDLETTGVSWYRDTIIEFGAVKVVDRKPVD-TYQQLVNP-MRNLNPFITQLTGITPD 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127 L+ P+ ++ +F + + I HN +FD+ FI+ QRI + P+RIIDTL Sbjct: 69 MLEPAPTLDTVLPDFLRWCGDD--AMIGHNIMRFDIKFIDLAAQRILHHAV-PNRIIDTL 125 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R +P R+ L L +R+ I + +H AL D+ + M Sbjct: 126 QMSRSMYPQYNRHRLVDLIQRFDI--ADVEEHRALSDAEQTQMCFEYM 171 >gi|319952129|ref|YP_004163396.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM 14237] gi|319420789|gb|ADV47898.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM 14237] Length = 457 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + ++I EI + D F + P + L GI + Sbjct: 2 YTIIDIETTGNGIQGNKITEISIFKY-DGYDVIEEFTTLINPE-AEIPYFITGLTGIDNT 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P FS + + + ++AHN FD I E + I D + + + T+ Sbjct: 60 MVRNAPKFSEVADQILKI--TEETIFVAHNVSFDYNIIKHEFKAIGVDFI--RQKLCTVR 115 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++R+ P L LC I ++ R H A D+ + ++ K++ Sbjct: 116 LSRKLFPGYNSYSLGKLCTALKIPLTDR--HRARGDAEATTILFEKLLR 162 >gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168] Length = 1447 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 7/200 (3%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +K++ ++FD+ETTGL + + IIE GA+ L + + + Q F+ P G K K+ G Sbjct: 385 DKLKFVIFDLETTGLSAFYNEIIEFGAIVLQNGIEIEKH-QFFIKPTG-KIPSAITKITG 442 Query: 65 ITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 I+ + + + S+ + +++ +AHNA FD F+ ++ K L + I Sbjct: 443 ISQKMIDETAISWEIALEKITKII--KDSVLVAHNAAFDFSFLEQFFRQKAKKSL-KNPI 499 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDTL ++R +P+ + + L ++ KRY I H A D+ +L+ ++ + N Sbjct: 500 IDTLEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLAELKSQN 559 Query: 183 FGFKTNEDRFFKEEKKTVPN 202 T+ + P Sbjct: 560 INDLTSLSEIKNSIFELRPE 579 >gi|114047347|ref|YP_737897.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7] gi|113888789|gb|ABI42840.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7] Length = 239 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 16/208 (7%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL + R IEIGAV + T R F + P G + + GI+++ Sbjct: 41 VVLDFETSGLSPNQGARAIEIGAVLIEQGQITAR-FSELMNP-GFRINSFIEDYTGISNQ 98 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + F F + +AHNA FD F++AE +I P + +L Sbjct: 99 MLAHAAPCAEVMARFAAFIGKH--HLVAHNAAFDQRFLDAEFAQIGHQY--PGQFGCSLL 154 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR +P + + L +L + + + + H AL D+ + ++++M+ Q G+ Sbjct: 155 LARRLYPEAINHQLATLVRHKQLP-TDGTFHRALADAEMTGHLWLRMLADLKQ---GYAI 210 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215 E F +K ++ K + P F R Sbjct: 211 TEPPFSLMQKI----MTKTKAEVPKFLR 234 >gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22] gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22] Length = 331 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 10/204 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T + Sbjct: 22 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSD 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I EF ++ +AHNA FD I E R + R + T++ Sbjct: 78 VLEGAPLFRDIAQEFSARLADR--VLVAHNAVFDWSMIAREYARAETEAPVRQR-LCTIA 134 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + L SL +G+ + H AL D+ +L++ + + + N Sbjct: 135 LSKELGLPLPNHKLESLAAHFGVV--QQRAHHALDDARVLAEAFRPSLRAAAASNVRLPL 192 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP 211 +E R E +++ + ++ P Sbjct: 193 HECRPLTEWRESPAAPRIGQQAGP 216 >gi|296135545|ref|YP_003642787.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] gi|295795667|gb|ADG30457.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] Length = 469 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG + DRI E+ AV ++ + + L P G++ P +L GI D Sbjct: 5 YVLLDLETTGSNPVLDRITEV-AVMRVEQGEVVAKWSRLLNP-GQRIPPFIQQLTGIDDA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+F + E + A +AHN +FD GF+ R D + + T+ Sbjct: 63 MVAGAPAFGEVLPELLAVLD--GAVLVAHNVRFDHGFLKQAAAREGVDL--RVKTLCTVR 118 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R+ +P +R + L+++ +R+G+ + ++H A+ D LL ++ + Sbjct: 119 LSRKLYPQARGHGLDAIMRRHGLHTT--ARHRAMGDVELLHQ-WLHI 162 >gi|307717332|gb|ADN88719.1| DNA polymerase III [Listeria seeligeri] Length = 231 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 8/171 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F ++ + +AHNA FD+GFIN +++ P + ++DTL +AR Sbjct: 59 SDPIDVVLKRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELARF 115 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +P + LN+L K++ I + H A+ D+ + + K++ +++ Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164 >gi|329117787|ref|ZP_08246504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parauberis NCFD 2020] gi|326908192|gb|EGE55106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parauberis NCFD 2020] Length = 1465 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 8/180 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ +VFD+ETTGL + N+ +I+I A ++ + F F+ P G S + Sbjct: 420 LDLHESTYVVFDVETTGLSAMNNDLIQIAASKMYKGN-ILEQFDEFIDP-GHPLSAFTTE 477 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD L + EF F ++ +AHNA FDVGF+NA R N P Sbjct: 478 LTGITDNHLVGAKPLHQVLVEFQAFC--KDTVLVAHNASFDVGFMNANYARENL-PKITQ 534 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL AR +P R+ L L KR+ + + H H A D+ + + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRFQVALDHH--HMANYDAEATGRLLFIFLKDARE 592 >gi|152979979|ref|YP_001352248.1| hypothetical protein mma_0558 [Janthinobacterium sp. Marseille] gi|151280056|gb|ABR88466.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 195 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 9/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + I D+ETTG + NDRI EIG V + +R + F+ P GR L GI+D Sbjct: 6 KLIFVDLETTGANLVNDRITEIGIVAVDPDGCIDR-WSTFVNP-GRPIPEFIQGLTGISD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ P F ++ + Q+ +IAHNA+FD GF++ R + + ++ T+ Sbjct: 64 EMVESAPMFETLADTVRERL--QDGLFIAHNARFDYGFLHHAFVRSGH--VLNAEMLCTV 119 Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P +++L+SL R+ + ++H AL D+ LL ++ K+ Sbjct: 120 KLSRALFPAEKKHNLDSLIARHDLIPE--ARHRALADADLLWQLWRKL 165 >gi|47094224|ref|ZP_00231936.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858] gi|47017396|gb|EAL08217.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858] Length = 618 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +K+ P F + + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L + + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFN--LGHDKPHRADSDAEVTAD 161 >gi|313202457|ref|YP_004041115.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688] gi|312441773|gb|ADQ85879.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688] Length = 473 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 10/166 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG DRI EI + + + +R +Q + P P +L GI D Sbjct: 5 YVLLDLETTGATPLVDRITEIALIRFENGQEVSR-WQTLVNPETA-IPPFIQRLTGIDDG 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + E D + A AHN +FD GF+ E +RI D +++ T+ Sbjct: 63 MVATAPHFKEVAGELLDHL--EGAVLCAHNVRFDHGFLKNEFKRIGIDL--RQKVLCTVK 118 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++R+ +P R + L+S+ +R+ + ++H A+ D L D +++ Sbjct: 119 LSRKLYPQHRSHSLDSIIERHSLQC--GARHRAMGDVVALVD-FLR 161 >gi|228982633|ref|ZP_04142892.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407] gi|228776816|gb|EEM25124.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407] Length = 286 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 12/216 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V DIETT K RI EIGAV+ +D ++ + + P K KL GIT+ Sbjct: 19 FVVLDIETTAFSPVKGGRITEIGAVKYIDGKVVDK-YSQLINPE-MKIPANITKLTGITN 76 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126 + ++ KP + + F F + +AHNAKFD F+ +++ P + ++D+ Sbjct: 77 DMVQGKPVYGQVLPVFQQFID--GFLVVAHNAKFDWNRFLLFYFEKVGIHP--KNEVLDS 132 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +++ + P+ + L+ C +G +R H A D+ +++ + Sbjct: 133 VAVFQHFCPNKGKYKLDDFCTTFGYLNKNR--HRAYEDAEATGYCLLELKRRFASEIPEV 190 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 + + +K + P I +KR K +++ +L Sbjct: 191 EEEPIKVQSVQKSSQPEI-FVKRVKYWEKKVSSTKL 225 >gi|15604982|ref|NP_219766.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D/UW-3/CX] gi|76788983|ref|YP_328069.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13] gi|166154472|ref|YP_001654590.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu] gi|166155347|ref|YP_001653602.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802684|ref|YP_002887878.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/Jali20/OT] gi|237804606|ref|YP_002888760.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/TZ1A828/OT] gi|255311062|ref|ZP_05353632.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276] gi|255317363|ref|ZP_05358609.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s] gi|255348621|ref|ZP_05380628.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70] gi|255503161|ref|ZP_05381551.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s] gi|255506839|ref|ZP_05382478.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923] gi|301335732|ref|ZP_07223976.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1] gi|3328673|gb|AAC67854.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX] gi|76167513|gb|AAX50521.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13] gi|165930460|emb|CAP03953.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu] gi|165931335|emb|CAP06907.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231272906|emb|CAX09817.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/TZ1A828/OT] gi|231273918|emb|CAX10710.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/Jali20/OT] gi|289525300|emb|CBJ14776.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2] gi|296434850|gb|ADH17028.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150] gi|296435777|gb|ADH17951.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768] gi|296436702|gb|ADH18872.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222] gi|296437637|gb|ADH19798.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074] gi|296438570|gb|ADH20723.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023] gi|297140136|gb|ADH96894.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301] gi|297748391|gb|ADI50937.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-EC] gi|297749271|gb|ADI51949.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-LC] Length = 232 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 76/182 (41%), Gaps = 11/182 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRI+E+ A T+ +FQ + P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIVELAAY----NGTTSESFQTLVNPEI-PIPAEATKIHGITTAE 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAH-NAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P F + +F +F N +AH N FD + E +R R ID+L Sbjct: 60 VADAPRFPEAYQKFIEFCGTDN-ILVAHNNNAFDYPLLVRECRRHGLSE-PQLRTIDSLK 117 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 A++ ++ L L + YG H AL D L V+ ++ S Sbjct: 118 WAKKYRTDLPQHSLQYLRQVYG--FEENQAHRALDDVITLYRVFSALVGDLSPDQIYDLL 175 Query: 188 NE 189 NE Sbjct: 176 NE 177 >gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1] gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1] Length = 956 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 13/176 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ETTGL++ D IIEI AV+ + + TF + P + +L GIT + Sbjct: 5 YIAIDVETTGLEAGVDEIIEIAAVKF-NADEVLETFSTLVQP-VHSLPLNSSRLTGITAD 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + F F +N + HN +FD+ + A+ R+ P DT Sbjct: 63 MLASAPRFAEVAPRFAAFL--KNYPLVGHNVEFDLRMLRAQGMRL------PQPAFDTFE 114 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +A P + L++L GI H H AL D+ + +++ ++ + Sbjct: 115 LATLLMPRTPAYRLSALAATLGI--HHDEAHRALSDADVTRQIFLYLLRRIEALPL 168 >gi|224283886|ref|ZP_03647208.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum NCIMB 41171] gi|311064734|ref|YP_003971459.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum PRL2010] gi|313141038|ref|ZP_07803231.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB 41171] gi|310867053|gb|ADP36422.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium bifidum PRL2010] gi|313133548|gb|EFR51165.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB 41171] Length = 180 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG+ D IIE GAV+++D + T+Q + P R +P +L GIT + Sbjct: 11 YVVLDLETTGVSWYRDTIIEFGAVKVVDRKPVD-TYQQLVNP-MRNLNPFITQLTGITPD 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127 L+ P+ ++ +F + + I HN +FD+ FI+ QRI + P+RIIDTL Sbjct: 69 MLEPAPTLDTVLPDFLRWCGDD--AMIGHNIMQFDIKFIDLAAQRILHHAV-PNRIIDTL 125 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R +P R+ L L +R+ I + +H AL D+ + M Sbjct: 126 QMSRSMYPQYNRHRLVDLIQRFDI--ADVEEHRALSDAEQTQMCFEYM 171 >gi|289435248|ref|YP_003465120.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171492|emb|CBH28036.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 928 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYATFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +KD P F + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKDAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L +G + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHQADSDAEVTAD 161 >gi|284030730|ref|YP_003380661.1| DNA polymerase III subunit epsilon [Kribbella flavida DSM 17836] gi|283810023|gb|ADB31862.1| DNA polymerase III, epsilon subunit [Kribbella flavida DSM 17836] Length = 602 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 88/233 (37%), Gaps = 27/233 (11%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + V D+ETTG + I EIGAV++ FQ + P P Sbjct: 32 TPLRDVTFCVVDLETTGGAPGDSGITEIGAVKVRAGELVGE-FQSLVNP-AEPIPPFIAV 89 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITD + P S+ F +F + +AHNA FDVGF+ + Q D D Sbjct: 90 LTGITDLMVASSPRIGSVLPAFLEF--ARGCVLVAHNAPFDVGFLKHDSQVHGYDWPD-F 146 Query: 122 RIIDTLSIARRKH-PS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ++DT +ARR P L +L K + T + H AL D+ DV + Sbjct: 147 PVVDTALLARRVLTPDEVPNCKLGTLAKLFRATTT--PNHRALSDARATVDVLHGL--FE 202 Query: 179 SQINFGFKTNED---------------RFFKEEKKTVPNISLLKRDKPLFTRI 216 + G +T ED R E P + L D+ + Sbjct: 203 RVGSLGVQTLEDLQTFSARVAPAVRKKRHLAESLPHAPGVYLFTDDRGEVLYV 255 >gi|29840147|ref|NP_829253.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC] gi|29834495|gb|AAP05131.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC] Length = 228 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 60/216 (27%), Positives = 92/216 (42%), Gaps = 16/216 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRIIEI A + T ++F ++ P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIIEIAAY----NNVTKQSFVTYVNPEI-PIPEEASKIHGITTST 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + +F DF + A +AHN FD + E +R + +PL R ID+L Sbjct: 60 VSSAPKFPEAYKQFCDFCGNE-AILVAHNNDSFDFPLLEKECRRHSLEPLSL-RTIDSLK 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 A++ P +++L L + YG + H AL D L +V+ ++ S Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLYNVFSALIGDLSAEQVLALM 175 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 E + K K + K T + + Sbjct: 176 EESQHPKAFK-----MPFGKYRGKPLTEVPASYIQW 206 >gi|257094696|ref|YP_003168337.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047220|gb|ACV36408.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 729 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 102/202 (50%), Gaps = 12/202 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLH 63 ++ VFD ETTGL + D II+IGA +++ + F + P R S +++++H Sbjct: 536 ELSYTVFDTETTGLQPSQGDEIIQIGATRIVNRRLLRHECFDQLIDP-RRPLSQQSIEVH 594 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E L +P+ ++ +F F + + HNA FD+ F+ + ++ P + Sbjct: 595 GITRELLVGQPTIDTVLPQFQTFCA--DTVLVGHNAAFDMRFLQLKEKQTGVRFDQP--V 650 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +DTL ++ HP+ + L ++ +R G+++ R H AL D+ + +V++KM+ +++ Sbjct: 651 LDTLLLSAVLHPNQNSHRLEAIAERLGVSVFGR--HTALGDAMVTGEVFLKMLPLLAEM- 707 Query: 183 FGFKTNEDRFFKEEKKTVPNIS 204 G T EK + Sbjct: 708 -GVTTLRQAREASEKTYHARLK 728 >gi|84514691|ref|ZP_01002055.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella vestfoldensis SKA53] gi|84511742|gb|EAQ08195.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella vestfoldensis SKA53] Length = 469 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 17/212 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60 + + +VFD ETTG D +++IGA+ +++ + + + P GR + Sbjct: 269 VPLRDLTYVVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDLLVNP-GRAIPASST 327 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +H ITD +KD P +F F ++A +AHNA FD+ F + +I P Sbjct: 328 AVHRITDAMVKDAPDMVHAGRKFHSF--ARDAVLVAHNAPFDLSFFHRYAPKIGMKFDHP 385 Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++DT+ ++ + + L+ L KR GI + + +H A+ D+ D++++M+ Sbjct: 386 --VLDTVLLSAVLFGITEGHTLDELAKRLGIELLDKHRHTAIGDAIATRDIFLRMI---- 439 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 E R V I KR P Sbjct: 440 ------PMLEARGLTTFGAVVAEIRKHKRLLP 465 >gi|300173484|ref|YP_003772650.1| DNA polymerase III subunit alpha [Leuconostoc gasicomitatum LMG 18811] gi|299887863|emb|CBL91831.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc gasicomitatum LMG 18811] Length = 1437 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL + D+IIE+ AV+ + F ++ P G S KL ITD Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVK-MQLGNVIEKFSEYINP-GFPLSDFTTKLTSITDT 476 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + +I F + E A I HN FD+GF+NA R +++ + + +IDTL Sbjct: 477 MVAHTDTEENIIKRFRQWVGE--AVLIGHNVTFDIGFMNAAYARYSQESI-TNPVIDTLP 533 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +P + L ++ KR+ I + H A+ D+ + +++ Sbjct: 534 FTRWLYPDYKSYRLGTIAKRFNINLE--QAHRAIFDAETTGHIAWRLI 579 >gi|297621916|ref|YP_003710053.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044] gi|297377217|gb|ADI39047.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044] Length = 249 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 15/234 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K + + D ETTGLD K DR+IE+ V K + F+ + P R ++ Sbjct: 1 MSCLEKQQFVCLDCETTGLDPKEDRVIEVACVAFTLEEKLD-AFETLIDPE-RDIPETSI 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LD 119 +H IT + + KP + + DF + H +FD+ I+ R L Sbjct: 59 AIHHITQKMVAGKPKVKEVLPKVLDFVGSH--IIVGHGIQFDIEAISHSCDRAGISKNLR 116 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDTL +AR S N L L K + I H A+ D + +V+ +++ G S Sbjct: 117 DNPFIDTLRMARLYGESPINSLEHLRKHFNIE--SEIAHRAMSDVMVNIEVFKQLLKGYS 174 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL--DEHDKTIQTL 231 + + + + + L K F I + L H Q L Sbjct: 175 SLK------QLNKILAKPIMLKEMPLGKHKGRPFKEIPVQYLRWAAHQDFDQDL 222 >gi|311746711|ref|ZP_07720496.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1] gi|126578388|gb|EAZ82552.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1] Length = 456 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 9/178 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + DIETTG + I EI + D K F+ + P + L GI Sbjct: 1 MEFAIVDIETTGGAASTCGITEIAILIH-DGEKVIEEFESLINPE-QDIPTYITGLTGID 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P+F + + WD + + ++AH+ FD GF+ A I ++ + T Sbjct: 59 NSMVSDAPTFEELSDKLWDLLHGR--VFVAHSVNFDYGFVRACFNAIGREFKVD--KLCT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + +AR+ P S L +C+ I I ++H A+ D+ + ++ +M+ SQ F Sbjct: 115 VRLARKIIPGLSSYSLGRICETQKIPI--LARHRAMGDARATAILFDQMLKKDSQTVF 170 >gi|307717410|gb|ADN88758.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis] gi|307717414|gb|ADN88760.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis] gi|307717416|gb|ADN88761.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis] Length = 231 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 8/171 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F ++ + +AHNA FD+GFIN +++ P + ++DTL +AR Sbjct: 59 SDPIDVVLQRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELARF 115 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +P + LN+L K++ I + H A+ D+ + + K++ +++ Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164 >gi|119717352|ref|YP_924317.1| hypothetical protein Noca_3128 [Nocardioides sp. JS614] gi|119538013|gb|ABL82630.1| DNA polymerase III, epsilon subunit [Nocardioides sp. JS614] Length = 601 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 92/232 (39%), Gaps = 28/232 (12%) Query: 4 KNKMRKIVFDIETTGLDSKNDR-IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + V D+ETTG ++ I EIGAV++ FQ + P + L Sbjct: 25 LRDITFCVVDLETTGGSAEGGAMITEIGAVKVRGGEVLGE-FQTLVNPRT-EIPAFIAVL 82 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI++ + D P + F +F + +AHNA FDVGF+ ++ + P Sbjct: 83 TGISNSMVADAPPVEAALPAFLEF--AAGSVLVAHNAPFDVGFLRYFAEQQGR-PWPGFE 139 Query: 123 IIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++DT +ARR + + L+SL K +G T + H AL D+ DV +M Sbjct: 140 VVDTARLARRVVSRDDAPNCKLSSLAKAFGSTTT--PNHRALSDARATVDVLHGLMERLG 197 Query: 180 QINFGFKTNED---------------RFFKEEKKTVPNISLLKRDKPLFTRI 216 G T E+ R E P + L + ++ + Sbjct: 198 --GVGVHTLEELQTFSSRVSSAQRRKRHLAEGLPHAPGVYLFRDEQAQVLYV 247 >gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] Length = 205 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 8/192 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + +++ IIEI A++ +R + + P KL GIT Sbjct: 11 FTIIDIETTGFNPESNDIIEIAAIKYQGNIILDRFWS-LIKPEIELIPEHISKLTGITTA 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D+P+ + +F +F +N + HN +FD+ F+N + + I + + I T Sbjct: 70 MVIDQPTVDKVLPDFLNFI--ENTILVGHNIRFDLAFLNKKAKEILNKTI-KNPFICTDH 126 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR+ L S+ + + I S +H A+ D+ + +++IKM+ N FK Sbjct: 127 LARKILSDIDSKSLASIAQHFNIPFS--RQHRAMYDAEVNLEIFIKMLRFLEDYNV-FKV 183 Query: 188 NEDRFFKEEKKT 199 + E KK Sbjct: 184 MDIIKLSEGKKV 195 >gi|150025957|ref|YP_001296783.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] gi|149772498|emb|CAL43981.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86] Length = 453 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 10/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + + ++ F + P P +KL GI + Sbjct: 2 YAILDIETTGGQFNEEGITEIAIYKFDGHQIVDQ-FISLVNPEI-PIQPFVVKLTGINNA 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F + + ++ +AHN FD + E R+ D ++ + T+ Sbjct: 60 MLVSAPKFHEVAKRIVEI--TKDCIIVAHNTVFDYRILRTEFSRLGYDF--QAKTLCTVE 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +A+ P L L + GI I++R H A D+ ++ KM++ Sbjct: 116 LAKILIPEQPSYSLGKLVRALGIPITNR--HRAEGDALATVKLF-KMLL 161 >gi|171056929|ref|YP_001789278.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6] gi|170774374|gb|ACB32513.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6] Length = 731 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 10/170 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT 66 VFD ETTGL+ D II+IGA + + +F+ + P R P + +HGI Sbjct: 541 YTVFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQ-RPIPPAGIPIHGIK 599 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + +P+ + F F Q+ +AHNA FD+ F+ + R P ++DT Sbjct: 600 PDMVAGQPTIDHVLPAFHAF--AQDTVLVAHNAAFDMRFLQLKQDRTGLVFDQP--VLDT 655 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L ++ HP + L ++ +R+ IT+ R H AL D+ + ++V+++++ Sbjct: 656 LLLSAVVHPNQESHRLEAIAERFSITVVGR--HTALGDAMVTAEVFVRLI 703 >gi|170288240|ref|YP_001738478.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2] gi|170175743|gb|ACB08795.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2] Length = 186 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 9/181 (4%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59 + N V D ETTG D DRI+EI AV + N+ F + P R Sbjct: 1 MIWNDTVFCVVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIR-IPALI 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGI++ +++ P ++++ F D+ + + HNA FD+ F++ + P+ Sbjct: 60 QKVHGISNMDIEEAPDMDAVYNLFRDYV--KGTVLVFHNANFDLTFLDMMAKETGNFPI- 116 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDTL ++ + L LC+R GI + R H AL D+ + + V++K++ Sbjct: 117 TNPYIDTLDLSEEIF-GRPHSLKWLCERLGIKTTIR--HRALPDALVTARVFVKLVEFLG 173 Query: 180 Q 180 + Sbjct: 174 E 174 >gi|15618325|ref|NP_224610.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae CWL029] gi|15835943|ref|NP_300467.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138] gi|16752629|ref|NP_444893.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39] gi|4376690|gb|AAD18554.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029] gi|8163413|gb|AAF73657.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila pneumoniae AR39] gi|8978782|dbj|BAA98618.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138] gi|269303286|gb|ACZ33386.1| exonuclease, DNA polymerase III, epsilon subunit family [Chlamydophila pneumoniae LPCoLN] Length = 237 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 11/178 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + I +D ETTG + DRIIEI A S T+ +F ++ P EA Sbjct: 1 MSSQTMDVLIFYDTETTGTQIERDRIIEIAAY----NSVTDESFLTYVNPEI-PIPDEAS 55 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLD 119 K+HGIT + + P F + F F +++ +AHN FD + E +R + +PL Sbjct: 56 KIHGITTDAVLSAPKFPEAYEGFRKFCG-EDSILVAHNNDGFDFPLLGKECRRHSLEPL- 113 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +R ID+L A++ P +++L L + YG + H AL D +L V+ ++ Sbjct: 114 TNRTIDSLKWAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVVILHKVFTSLIG 169 >gi|313632670|gb|EFR99647.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria seeligeri FSL N1-067] Length = 928 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYATFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +KD P F + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKDAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR +P L L +G + H H A D+ + +D Sbjct: 118 DTVELARIMYPGIDSYKLQDLSDEFG--LGHDKPHQADSDAEVTAD 161 >gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC 27064] Length = 334 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 10/202 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ L + + + P P + +HG+T + Sbjct: 20 YAVVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTLVNPER---DPGPVWIHGLTSD 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F I EF + + +AHNA FD I E R + + + T++ Sbjct: 76 VLAGAPLFQDIADEFSQRLDGR--VLVAHNAMFDWSMIAREYARA-RRTAPTRQRLCTIA 132 Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ + P + L SL +G+ R H AL D+ +L++ + + ++ Sbjct: 133 LAKELRLPLPNHKLESLAAHFGVV--QRQAHHALDDARVLAEAFRPSLHTAARDGVRLPL 190 Query: 188 NEDRFFKEEKKTVPNISLLKRD 209 E E + + + Sbjct: 191 LECLPLTEWSDSPAVARIGYQP 212 >gi|170698522|ref|ZP_02889593.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] gi|170136606|gb|EDT04863.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] Length = 375 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + + D+ETTG S RI EIG VE+ T+ + P G+ P +L GI Sbjct: 12 EQPLVFVDLETTGGSSAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQAIPPFIQQLTGI 68 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +DE ++D PSF+S+ + + ++AHNA FD GF+ AE +R ++ Sbjct: 69 SDEMVRDAPSFASLAPALVERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLC 124 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ ++R P R+ L++L +R+G+ + ++H AL D+ LL + ++ Sbjct: 125 TVRLSRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172 >gi|307717354|gb|ADN88730.1| DNA polymerase III [Listeria innocua] Length = 231 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 91/171 (53%), Gaps = 8/171 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + +F ++ + +AHNA FD+GFIN +++ + + ++DTL +AR Sbjct: 59 SDPIDVVLKQFKEW--SGDNILVAHNASFDMGFINTAYEKVGIEKA-KNAVVDTLELARF 115 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +P + LN+L K++ I + H A+ D+ + + K++ +++ Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164 >gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] Length = 330 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 11/197 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T + Sbjct: 25 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPQR---DPGPVWIHGLTSD 80 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P F + EF + + +AHNA FD I E R ++ R + T++ Sbjct: 81 VLRDAPLFPDVAEEFAARLDGR--VLVAHNAVFDWQMIAREYARAEREAPVRQR-LCTIA 137 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + L SL +G+ + H AL D+ +L++ + ++ + + Sbjct: 138 LSKALDLPLPNHKLESLAAHFGVV--QQRAHHALDDARVLAEAFRPSLLAAAAGDVRLPL 195 Query: 188 NEDRFFKE-EKKTVPNI 203 +E R E + P I Sbjct: 196 HECRPLTEWSDRPAPRI 212 >gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)] gi|256788562|ref|ZP_05526993.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24] gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7) [Streptomyces coelicolor A3(2)] Length = 328 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 11/197 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T + Sbjct: 23 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPQR---DPGPVWIHGLTSD 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P F + EF + + +AHNA FD I E R ++ R + T++ Sbjct: 79 VLRDAPLFPDVAEEFAARLDGR--VLVAHNAVFDWQMIAREYARAEREAPVRQR-LCTIA 135 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + L SL +G+ + H AL D+ +L++ + ++ + + Sbjct: 136 LSKALDLPLPNHKLESLAAHFGVV--QQRAHHALDDARVLAEAFRPSLLAAAAGDVRLPL 193 Query: 188 NEDRFFKE-EKKTVPNI 203 +E R E + P I Sbjct: 194 HECRPLTEWSDRPAPRI 210 >gi|307297316|ref|ZP_07577122.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916576|gb|EFN46958.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 182 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 8/171 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64 M +V D ETTG++ + ++IE+ V + ++ + F + P L G Sbjct: 1 MEFVVIDTETTGMNPYRGAKLIEVAGVRVKNWELCRDDFFDSLIDPEC-IIPIAITALTG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I++ +KDK + + F+ F +A + HNA FD+ FIN + L ++ I Sbjct: 60 ISNLTVKDKSTVCDVLRGFYSFAG--DATLVIHNAPFDLSFINFYGDKCGLGKL-RNQFI 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+ +++ RN+L+ L R GI R H AL D+ ++ ++ M+ Sbjct: 117 DTIEVSKAVFRYGRNNLDILLARLGIIPESR--HRALGDALATAEAFVAML 165 >gi|227553912|ref|ZP_03983959.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis HH22] gi|227176898|gb|EEI57870.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis HH22] Length = 929 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|260769807|ref|ZP_05878740.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972] gi|260615145|gb|EEX40331.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972] Length = 205 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 84/176 (47%), Gaps = 9/176 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL DR IEIGAV+L+D + TFQ + P G + S GIT+ Sbjct: 9 IVLDFETTGLSPNMGDRAIEIGAVKLVDG-QVAGTFQQLMNP-GFRVSGFIEGYTGITNT 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ + +EF F + +AHNA FD F++AE RI P + ++ Sbjct: 67 MLRTALPCEEVMAEFAHFIG--DTPLVAHNASFDKRFLDAEFDRIGVRY--PGQFACSML 122 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IARR ++ + L L + I + H AL DS + + +++ M+ + Sbjct: 123 IARRLIQNAPTHKLGDLVRFKQIENDG-TFHRALADSQMTASLWMLMVNDLRERGV 177 >gi|126665661|ref|ZP_01736642.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17] gi|126629595|gb|EBA00212.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17] Length = 483 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 9/203 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D+ETTG DRI EIG + +Q + P R SP +L GI++ Sbjct: 13 FAFLDLETTGGSVATDRITEIGIQFWRAGECVGQ-WQTLVNPKTR-ISPFIEQLTGISNA 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P F I E + ++AHNA+FD GF+ E +R+ + + ++++ T+ Sbjct: 71 MVADAPLFEDIADELEQRLD--GVVFVAHNARFDYGFVKGEFRRLGRMFV--AKVLCTVK 126 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++RR +P R+++++L +R+G+ +H A+ D + + ++ + Sbjct: 127 LSRRLYPEFRRHNMDALIERHGLQ--QVQRHRAMGDVAAMLGFFEHVLAQQGEDTLETAI 184 Query: 188 NEDRFFKEEKKTVPNISLLKRDK 210 E +P +L + + Sbjct: 185 CELLQRPSIPSHLPLDTLQELPR 207 >gi|255972155|ref|ZP_05422741.1| DNA polymerase III [Enterococcus faecalis T1] gi|255963173|gb|EET95649.1| DNA polymerase III [Enterococcus faecalis T1] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|229545209|ref|ZP_04433934.1| conserved hypothetical protein [Enterococcus faecalis TX1322] gi|229309754|gb|EEN75741.1| conserved hypothetical protein [Enterococcus faecalis TX1322] Length = 175 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 8/172 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLI 172 >gi|15835437|ref|NP_297196.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270285617|ref|ZP_06195011.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg] gi|270289627|ref|ZP_06195929.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss] gi|301337013|ref|ZP_07225215.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14] gi|8163328|gb|AAF73606.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum Nigg] Length = 250 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 6/183 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ + + D ETTGLD K DR+IE A+ + + + + + P R S E+ Sbjct: 1 MVLLKDIEFVCLDCETTGLDVKKDRVIEFAAIRFT-FDEVIDSVEFLIHPE-RAVSAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+H I+D LKDKP FS +FS FF E++ + H+ FD+ ++ E +R+ + L Sbjct: 59 KIHKISDAMLKDKPKFSEVFSTIKGFFKERD-YIVGHHVGFDLQVLSQESERLGETLLPK 117 Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IDTL +A+ S N L +L + + + H+ H A+ D + V+ + Sbjct: 118 QHYVIDTLRLAKEYGDSPNNSLEALARHFNVP--HQGNHRAMKDVEMNVKVFKHLTKRFR 175 Query: 180 QIN 182 ++ Sbjct: 176 TLS 178 >gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [marine bacterium HP15] Length = 486 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 9/156 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 DIETTG +S DRI EIG +Q L P R SP GI++E Sbjct: 13 FAFLDIETTGGNSARDRITEIGIRFWRAGEVVGE-WQTLLNPETR-ISPFIENFTGISNE 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P F + E + ++AHNA+FD GFI +E +R+ + L ++++ T+ Sbjct: 71 MVADAPLFEEVADELEAQL--KGKVFVAHNARFDYGFIKSEFRRLGR--LFSAKVLCTVK 126 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLD 163 ++RR +P R+++++L R+G+ R H A+ D Sbjct: 127 LSRRLYPEFRRHNMDALIARHGLARVQR--HRAMGD 160 >gi|91789989|ref|YP_550941.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666] gi|91699214|gb|ABE46043.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666] Length = 729 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 54/182 (29%), Positives = 98/182 (53%), Gaps = 10/182 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLH 63 ++ VFD ETTGL+ D II+IGA+ +++ N T + P R+ PE++ +H Sbjct: 536 QLSYTVFDTETTGLEPSAGDEIIQIGAIRIVNGRLLRNETIDQLIDP-RRRLKPESIAIH 594 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT++ +K +P+ F +F ++ +AHNA FD+ F+ +L+ + + + Sbjct: 595 GITEDMVKGQPTIEQALPAFHEFC--EDTVLVAHNAAFDMRFL--QLKEASTGIVFRQPV 650 Query: 124 IDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +DTL ++ HP + L ++ R GI + R H AL D+ + ++++KM+ +Q N Sbjct: 651 LDTLLLSALLHPNQESHRLEAIAGRLGINVIGR--HTALGDAIVTGEIFLKMIPLLAQQN 708 Query: 183 FG 184 Sbjct: 709 IH 710 >gi|315173642|gb|EFU17659.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1346] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|315035644|gb|EFT47576.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0027] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|257087406|ref|ZP_05581767.1| DNA polymerase III [Enterococcus faecalis D6] gi|256995436|gb|EEU82738.1| DNA polymerase III [Enterococcus faecalis D6] gi|315025444|gb|EFT37376.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2137] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|256963550|ref|ZP_05567721.1| DNA polymerase III [Enterococcus faecalis HIP11704] gi|307271490|ref|ZP_07552762.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0855] gi|256954046|gb|EEU70678.1| DNA polymerase III [Enterococcus faecalis HIP11704] gi|306511762|gb|EFM80760.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0855] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|256853717|ref|ZP_05559082.1| DNA polymerase III [Enterococcus faecalis T8] gi|307291048|ref|ZP_07570934.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0411] gi|256710660|gb|EEU25703.1| DNA polymerase III [Enterococcus faecalis T8] gi|306497897|gb|EFM67428.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0411] gi|315030986|gb|EFT42918.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4000] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|29376872|ref|NP_816026.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Enterococcus faecalis V583] gi|227519901|ref|ZP_03949950.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis TX0104] gi|29344337|gb|AAO82096.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Enterococcus faecalis V583] gi|227072695|gb|EEI10658.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis TX0104] gi|315574388|gb|EFU86579.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0309B] gi|315580138|gb|EFU92329.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0309A] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|315150174|gb|EFT94190.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0012] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|315032870|gb|EFT44802.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0017] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|257416585|ref|ZP_05593579.1| DNA polymerase III [Enterococcus faecalis AR01/DG] gi|257158413|gb|EEU88373.1| DNA polymerase III [Enterococcus faecalis ARO1/DG] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|256617168|ref|ZP_05474014.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|307277210|ref|ZP_07558314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2134] gi|256596695|gb|EEU15871.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|295113409|emb|CBL32046.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus sp. 7L76] gi|306506140|gb|EFM75306.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2134] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|229549451|ref|ZP_04438176.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis ATCC 29200] gi|256956656|ref|ZP_05560827.1| DNA polymerase III [Enterococcus faecalis DS5] gi|257419833|ref|ZP_05596827.1| DNA polymerase III [Enterococcus faecalis T11] gi|300861259|ref|ZP_07107346.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus faecalis TUSoD Ef11] gi|312953414|ref|ZP_07772254.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0102] gi|229305688|gb|EEN71684.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis ATCC 29200] gi|256947152|gb|EEU63784.1| DNA polymerase III [Enterococcus faecalis DS5] gi|257161661|gb|EEU91621.1| DNA polymerase III [Enterococcus faecalis T11] gi|300850298|gb|EFK78048.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus faecalis TUSoD Ef11] gi|310628623|gb|EFQ11906.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0102] gi|315152082|gb|EFT96098.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0031] gi|315159114|gb|EFU03131.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0312] gi|315170323|gb|EFU14340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1342] gi|327535661|gb|AEA94495.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecalis OG1RF] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|325681442|ref|ZP_08160968.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus albus 8] gi|324106932|gb|EGC01222.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus albus 8] Length = 1498 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTG + ++D+IIEIGAV+L ++ F + + P G + L ITD+ Sbjct: 447 IICFDLETTGTNPRDDKIIEIGAVKLRGLEIVDK-FDMLVDP-GCPLTEFISNLTNITDD 504 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK + + F +F E+ +AHNA FD GFI +R IDT+ Sbjct: 505 MLKGQSDIKTALEAFVEFCGEKPC-LVAHNAPFDTGFIKHACEREGIKF--EFSSIDTVP 561 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +++ P ++ LN + + +G H D+ +L ++I++ Sbjct: 562 MSQLMLPQLEKHKLNYVAEHFG--YGDFQHHRGCDDAEVLGKIFIEL 606 >gi|256763069|ref|ZP_05503649.1| DNA polymerase III [Enterococcus faecalis T3] gi|257079582|ref|ZP_05573943.1| DNA polymerase III [Enterococcus faecalis JH1] gi|294779459|ref|ZP_06744857.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis PC1.1] gi|307270866|ref|ZP_07552153.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4248] gi|312903707|ref|ZP_07762881.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0635] gi|256684320|gb|EEU24015.1| DNA polymerase III [Enterococcus faecalis T3] gi|256987612|gb|EEU74914.1| DNA polymerase III [Enterococcus faecalis JH1] gi|294453465|gb|EFG21869.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis PC1.1] gi|306512779|gb|EFM81424.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4248] gi|310632899|gb|EFQ16182.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0635] gi|315166434|gb|EFU10451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1341] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus Tu4000] Length = 314 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 12/212 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T + Sbjct: 10 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTTVNPER---DPGPVWIHGLTSD 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + +EF + +AHNA FD I E R + R+ Sbjct: 66 VLEGAPLFKDVAAEFAARL--EGRVLVAHNAVFDWQMIAREYARARGEAPVRQRLCTIAL 123 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 K P + L SL +G+ R H AL D+ +L++ + + + + Sbjct: 124 SKELKLPLPNHKLESLAAHFGVV--QRRAHHALDDARVLAEAFRPSLRAAAAGGVRLPLH 181 Query: 189 EDRFFKEEKKTVPNISLLKRD---KPLFTRIT 217 E R E + P I +P R + Sbjct: 182 ECRPLTEWTER-PRIGQQAGPGGYRPASWRPS 212 >gi|257082037|ref|ZP_05576398.1| DNA polymerase III [Enterococcus faecalis E1Sol] gi|256990067|gb|EEU77369.1| DNA polymerase III [Enterococcus faecalis E1Sol] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2] gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2] Length = 1458 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 7/180 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + ++FDIETTGL D+IIE GA++ + + Q+F+ P K S + Sbjct: 414 TKISDATYVIFDIETTGLSPYYDKIIEFGAIKYHKGVQV-ESIQMFINPE-EKISDKIFA 471 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120 + I++E +KD + DF ++ IAHN KFD+ F+N +L+ D + Sbjct: 472 ITKISNEDVKDALKIKEALVKIKDFIG--DSVLIAHNGIKFDLPFLNCKLEENKMDII-K 528 Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + +IDTL I+R + + L + ++Y I H A D+ L +++ +M+ Sbjct: 529 NPLIDTLQISRAINEQIHGHSLGVIARKYKIDYDETQAHRADKDAEYLLNIWKRMLENQK 588 >gi|110004377|emb|CAK98715.1| probable dna polymerase III alpha subunit protein [Spiroplasma citri] Length = 1453 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 10/204 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + ++FD+ETTGL S D IIE GAV + S + P+ K S +L GITD Sbjct: 409 KYVIFDLETTGLSSGYDEIIEFGAVIMDGISGERQIINHLFKPS-VKLSSFTTELTGITD 467 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L DKP+F + ++F ++A IAHNA+FD+GFI + L++ + ++ + +IDTL Sbjct: 468 ELLADKPTFIESIDQILEYF--KDAILIAHNAEFDLGFIQSWLKKAGRSEIN-NTVIDTL 524 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++R P +N L ++ + Y + + H D+ +L+D+Y + N+G + Sbjct: 525 QLSRILEPHLKNYRLGTIARCYSVIYNEEVAHRGDYDAIVLTDIYEHQLRKMIN-NYGIE 583 Query: 187 TNEDRFFKEEKKTVPNISLLKRDK 210 + D E P + R K Sbjct: 584 FDNDI----ENIHDPAVYKKLRPK 603 >gi|149372305|ref|ZP_01891493.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] gi|149354695|gb|EDM43258.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] Length = 460 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 18/214 (8%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + DIETTG + I EI D K F + P R P + L GI Sbjct: 1 MNYAILDIETTGGKYNEEGITEIAIYRF-DGEKVVDQFCSLVNPE-RPIQPFVVNLTGIN 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + LK+ P F + + ++ +AHNA+FD + E R+ D + T Sbjct: 59 SDMLKNAPKFYEVAKRIVEI--TKDCILVAHNAQFDNRILTTEFDRLGYDF--DLETLCT 114 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + ++++ P L L + GI I+ R H A D+ ++ KM++ Sbjct: 115 VELSKKLIPDMPSYSLGKLVRSLGIPITDR--HRAQGDAKATVTLF-KMLL--------L 163 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 K E K K P + + L + E Sbjct: 164 KDTEKEIIKAAVKKDPKRQIDTKLLDLIKQAPSE 197 >gi|326692531|ref|ZP_08229536.1| Rad3-related DNA helicase [Leuconostoc argentinum KCTC 3773] Length = 801 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 10/182 (5%) Query: 2 IRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + NK +V D+ETTG ++ RII+IG + + + F+ F+ P G+ Sbjct: 1 MNANK-TFVVVDLETTGQSVARGGRIIQIGMTFIKNRRIVD-HFESFVNP-GQPIDRNIQ 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L I+++ ++D P F I + Q+ IAHN FD ++N EL R P+ Sbjct: 58 QLTHISEKDVRDAPYFEEIVPVLRNML--QDTVLIAHNINFDYPYLNDELARTGF-PVLN 114 Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDT+ +A+ P++ L L IT+++ H A D+ + +++K+ Sbjct: 115 NPAIDTVQLAQILLPTAPGYRLLDLTTFLNITLNN--AHRANADAQATALLFLKLWQKAE 172 Query: 180 QI 181 Q+ Sbjct: 173 QL 174 >gi|312899802|ref|ZP_07759121.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0470] gi|311293052|gb|EFQ71608.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0470] gi|315146017|gb|EFT90033.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX2141] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|307287736|ref|ZP_07567779.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0109] gi|306501474|gb|EFM70777.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0109] gi|315164835|gb|EFU08852.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX1302] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|315161735|gb|EFU05752.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0645] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|257421980|ref|ZP_05598970.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98] gi|257163804|gb|EEU93764.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98] gi|315155308|gb|EFT99324.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0043] Length = 929 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|126661817|ref|ZP_01732816.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] gi|126625196|gb|EAZ95885.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] Length = 453 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 10/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + D + F + P + P +KL GI + Sbjct: 2 YAIIDIETTGGQFNEEGITEIAIYKF-DGHEVVDQFISLVNPE-KPIQPFVVKLTGINNA 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + + + +AHNA FD + E +R+ D + + T+ Sbjct: 60 MLRSAPKFYEVAKRIIEI--TEGCVIVAHNASFDYRILKTEFRRLGYDF--KKQTLCTVE 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++++ P L L + GI ++ R H A D+ ++ KM++ Sbjct: 116 LSKKLIPEQPSYSLGKLVRALGIPMADR--HRANGDALATVKLF-KMLL 161 >gi|255975219|ref|ZP_05425805.1| DNA polymerase III [Enterococcus faecalis T2] gi|307285838|ref|ZP_07565972.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0860] gi|255968091|gb|EET98713.1| DNA polymerase III [Enterococcus faecalis T2] gi|306502599|gb|EFM71866.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0860] Length = 929 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|114565211|ref|YP_752725.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] gi|114336504|gb|ABI73886.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB 400] Length = 204 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M N+ +V D ETTGL N DR IEIGAV+L++ + TFQ + P GR+ + Sbjct: 1 MKLANQ--VVVLDFETTGLSPDNGDRAIEIGAVKLVNGQIVD-TFQELINP-GRRVNSFI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + GI+++ LK P+ + +F F + N +AHNA FD F++AE Sbjct: 57 EQYTGISNDMLKHAPTSKQVMGQFAKFIDGFN--LVAHNASFDKKFLDAEFSHSKLHY-- 112 Query: 120 PSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +L ++RR + + L +L + + H AL D+ + S +++ + Sbjct: 113 SGQFACSLLLSRRISQDAPNHKLGTLVDHHQLPNDG-VFHRALADATMTSHLWLHQI 168 >gi|319950676|ref|ZP_08024577.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4] gi|319435659|gb|EFV90878.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4] Length = 547 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 13/206 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ +V D+ETTG D I EIGAV + + F+ +G +L Sbjct: 33 LSEVTFVVVDLETTGTRPGGDEITEIGAVRIR-GGEVQAELSTFVSIDGV-LPGHISRLT 90 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI E L PS + + F +F + A +AHNA+FD+GF+ A DP Sbjct: 91 GIAPEDLVGAPSLGEVMATFLEF--SRGAVLVAHNARFDLGFLRAAAAATGHRWPDP-PS 147 Query: 124 IDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + TL++ARR + L L G T+ H AL D+ DV ++ Sbjct: 148 VCTLALARRVLHRGETRGHRLGVLAAHLGATVE--PNHRALQDARATVDVLHALISRVG- 204 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLL 206 + G T + + + P I Sbjct: 205 -DCGVSTLSE-LLAYDGRLAPEIRRR 228 >gi|307717320|gb|ADN88713.1| DNA polymerase III [Listeria monocytogenes] gi|307717330|gb|ADN88718.1| DNA polymerase III [Listeria monocytogenes] gi|307717378|gb|ADN88742.1| DNA polymerase III [Listeria monocytogenes] gi|307717380|gb|ADN88743.1| DNA polymerase III [Listeria monocytogenes] gi|307717394|gb|ADN88750.1| DNA polymerase III [Listeria monocytogenes] gi|307717396|gb|ADN88751.1| DNA polymerase III [Listeria monocytogenes] Length = 231 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 91/171 (53%), Gaps = 8/171 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F ++ + +AHNA FD+GFIN +++ + + + ++DTL +AR Sbjct: 59 SDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELARF 115 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +P + LN+L K++ I + H A+ D+ + + K++ +++ Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164 >gi|295397429|ref|ZP_06807516.1| DNA polymerase III [Aerococcus viridans ATCC 11563] gi|294974330|gb|EFG50070.1| DNA polymerase III [Aerococcus viridans ATCC 11563] Length = 314 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ DIETTGL ND I+E+ A+ + D+ +RTF + PN R S L GI++ Sbjct: 25 YVMIDIETTGLKPSNDEILELSAIRIRDHQM-DRTFSTLVQPN-RPISGFITNLTGISNH 82 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P EF DF E + +N FD+ FI + P+ + +D L+ Sbjct: 83 MVMTAPPIEQAIPEFLDFIQED--IILGYNVNFDLSFIYDTAVNLYNFPV-RNDYLDVLT 139 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 IAR+ + + L ++ + YGI+ H L D ++ +VY ++ Q+ Sbjct: 140 IARKLVTETPNHKLGTMAQFYGISYEG--AHRGLTDCYITVEVYNQLFNQAKQV 191 >gi|323481332|gb|ADX80771.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis 62] Length = 929 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|86143556|ref|ZP_01061941.1| nuclease subunit Cho of the excinuclease complex (UvrC-like protein) [Leeuwenhoekiella blandensis MED217] gi|85830003|gb|EAQ48464.1| nuclease subunit Cho of the excinuclease complex (UvrC-like protein) [Leeuwenhoekiella blandensis MED217] Length = 519 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + + D+ETTG K ++I EI + L + + NR F + P GR+ KL GI D Sbjct: 49 KFAIIDVETTGGGIKGNKITEICIIVLQEGKEINR-FASLVNP-GREIPLYIEKLTGIND 106 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++D P F + + Q+ ++AHN FD + AE + D + + T+ Sbjct: 107 RMVEDAPYFDELAPQIDAL--TQDCIFVAHNVGFDYNVVRAEFKEAGLDF--NRKRLCTV 162 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A++ P L +LC I I H +H A D+ ++ + + Sbjct: 163 RLAKKLIPGLFSYSLGNLCT--SINIPHYDRHRATGDTEATVILFQRCL 209 >gi|265993833|ref|ZP_06106390.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] gi|262764814|gb|EEZ10735.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str. Ether] Length = 143 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 59/143 (41%), Positives = 88/143 (61%), Gaps = 2/143 (1%) Query: 101 FDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGA 160 FD+GFINAEL R+++ + I+DTL++ARRKHP N L++LCKRYGI SHR+ HGA Sbjct: 2 FDLGFINAELARLDQAEITSEHIVDTLALARRKHPIGPNSLDALCKRYGIDNSHRTLHGA 61 Query: 161 LLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKT-VPNISLLKRDKPLFTRITKE 219 LLD+ +L++VYI+++ GG Q G + + + L R +PL RI+ Sbjct: 62 LLDAQILAEVYIELI-GGKQTALGLTMESGSAGGDSRGNGSAPVVLAARPRPLPPRISDA 120 Query: 220 ELDEHDKTIQTLGKNAIWDRYIS 242 E H ++ +G A+W +Y+S Sbjct: 121 ERAAHAALVEKMGDKAVWKKYLS 143 >gi|257084662|ref|ZP_05579023.1| DNA polymerase III [Enterococcus faecalis Fly1] gi|256992692|gb|EEU79994.1| DNA polymerase III [Enterococcus faecalis Fly1] Length = 929 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPNQA-VPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|218961823|ref|YP_001741598.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas acidaminovorans] gi|167730480|emb|CAO81392.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas acidaminovorans] Length = 960 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 8/175 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ + DIETTGL+S+ D II+I + + F + P G K Sbjct: 17 LPLEQLEFVAIDIETTGLNSEWDEIIQIAGMRFK-GEEVVNQFVSLVKPKG-KVPKFIEH 74 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L I+ + LK P + +F +F ++ + HN FD F+N + P+ + Sbjct: 75 LTHISPQELKTAPPIKEVLKDFCNFIG--DSILVGHNIGFDFNFLNQFIVDNGGFPIS-N 131 Query: 122 RIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT I R P ++ + L++L +GI + + H A D+ ++ + Sbjct: 132 MHWDTAEIGRIYLPFTTDHKLSTLVSFFGIEL--MNAHQADADALATGKLFNALT 184 >gi|146301193|ref|YP_001195784.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] gi|146155611|gb|ABQ06465.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] Length = 453 Score = 151 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 10/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + D + F + P P +KL GI + Sbjct: 2 YAILDIETTGGQFNEEGITEIAIYKF-DGHEVVDQFISLVNPEI-PIQPFVVKLTGINNA 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + + + +AHNA FD + E +R+ D ++ + T+ Sbjct: 60 MLRSAPKFYEVAKRIIEI--TTDCVIVAHNASFDYRILRTEFRRLGYDF--EAKTLCTVE 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +A++ P L L + GI ++ R H A D+ + ++ KM++ Sbjct: 116 LAKKLIPEQPSYSLGKLVRALGIPMADR--HRASGDAMATTKLF-KMLL 161 >gi|307717326|gb|ADN88716.1| DNA polymerase III [Listeria monocytogenes] gi|307717328|gb|ADN88717.1| DNA polymerase III [Listeria monocytogenes] gi|307717342|gb|ADN88724.1| DNA polymerase III [Listeria marthii] gi|307717348|gb|ADN88727.1| DNA polymerase III [Listeria monocytogenes] gi|307717364|gb|ADN88735.1| DNA polymerase III [Listeria monocytogenes] gi|307717370|gb|ADN88738.1| DNA polymerase III [Listeria marthii] gi|307717372|gb|ADN88739.1| DNA polymerase III [Listeria marthii] gi|307717376|gb|ADN88741.1| DNA polymerase III [Listeria monocytogenes] gi|307717382|gb|ADN88744.1| DNA polymerase III [Listeria monocytogenes] gi|307717384|gb|ADN88745.1| DNA polymerase III [Listeria monocytogenes] gi|307717398|gb|ADN88752.1| DNA polymerase III [Listeria monocytogenes] gi|307717404|gb|ADN88755.1| DNA polymerase III [Listeria monocytogenes] Length = 231 Score = 151 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 91/171 (53%), Gaps = 8/171 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F ++ + +AHNA FD+GFIN +++ + + + ++DTL +AR Sbjct: 59 SDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAE-NAVVDTLELARF 115 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +P + LN+L K++ I + H A+ D+ + + K++ +++ Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLAWKLIKDAKEMH 164 >gi|83319984|ref|YP_424323.1| DNA polymerase III, alpha subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283870|gb|ABC01802.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 1479 Score = 151 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 5/169 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + + FD+ETTGL + D IIE GA+E + + + + P + KL I + Sbjct: 431 KMVFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPKSKLKD-FTKKLTNINE 489 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L++KP F E ++A +AHNA FD F++ +++ L+ + IIDTL Sbjct: 490 EMLENKPGIEVAFKEINQVI--KDAILVAHNANFDYTFLSHWSEKLGYGKLE-NTIIDTL 546 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +I+R +P + + L SL KR I+ H D+ +L+D+Y +M+ Sbjct: 547 TISRIIYPELKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 595 >gi|311742833|ref|ZP_07716641.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM 15272] gi|311313513|gb|EFQ83422.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM 15272] Length = 569 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 79/206 (38%), Gaps = 18/206 (8%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K RI EIGAV + FQ + P+ L GITD Sbjct: 32 FCVVDLETTGGSPQKGSRITEIGAVLVRGGEVLGE-FQTLVNPD-ESIPAFITVLTGITD 89 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P + F +F + + +AHNA FD GF+ + P ++DT Sbjct: 90 QMVVQAPRIAEALPSFLEF--ARGSVLVAHNAPFDTGFLRHAAAELQI-PWPRFEVLDTA 146 Query: 128 SIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 +ARR + L +L G T + H AL D+ DV + + Sbjct: 147 LLARRVLLAGEVRNCKLGTLAAHVGATTT--PNHRALSDARATVDVLHHLFERLGPLGVH 204 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDK 210 +E + ++ +R K Sbjct: 205 -------SLEEARAYTSTVTPAQRRK 223 >gi|297529654|ref|YP_003670929.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. C56-T3] gi|297252906|gb|ADI26352.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. C56-T3] Length = 909 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 15/218 (6%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D+ETTG K DRII++G + D R F F P + +L I Sbjct: 4 RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE-QPIPLFIQQLTNIN 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++ P F+ E A ++AHN FD+ F+ AEL+R P IDT Sbjct: 62 EQMVEGAPLFADKAGEIAALM--HGAYFVAHNVDFDLPFLQAELERAGWPPFA-GPTIDT 118 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + +AR P+ L L ++ G + H H A D+ + + ++I ++ S++ Sbjct: 119 VELARIVLPTAESYKLGDLARQLG--LHHDRPHQADSDAEVTAKLFIALLKRLSRLPL-M 175 Query: 186 KTNEDRFFKEEKKT-----VPNISLLKRDKPLFTRITK 218 + R K+ + + KR+K R Sbjct: 176 TLEQLRGLARHLKSDIYLLLDAVIAKKRNKAPADRAVA 213 >gi|332525056|ref|ZP_08401237.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] gi|332108346|gb|EGJ09570.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] Length = 645 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 10/170 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGIT 66 VFD ETTGL+ D II+IGA ++ + + +F+ + P R + +HGIT Sbjct: 455 YTVFDTETTGLEPSAGDEIIQIGATRIVAGKLRRHESFEQLVDPQ-RAIPERTVAIHGIT 513 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +P+ + F + +AHNA FD+ F+ + + P ++DT Sbjct: 514 PAMVAGQPTIREVLPALHAF--AHDTVLVAHNAAFDLRFLELKERAAGVRFDMP--VLDT 569 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L +++ HP R+ L ++ +R G+ + R H AL D+ + ++V++KM+ Sbjct: 570 LLLSQVLHPNQERHSLEAIAERLGVPVLGR--HTALGDAIVTAEVFLKMI 617 >gi|71907013|ref|YP_284600.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] gi|71846634|gb|AAZ46130.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] Length = 204 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 10/191 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL + DR EI AV L + +R +Q + G + +L GI++ Sbjct: 5 AVIDFETTGLSPAQGDRATEIAAVILENGKVVDR-YQSLMN-AGVRIPSFIEQLTGISNA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + + E DF + +AHNA FD F +AE+ RIN +L Sbjct: 63 MIRSAPPAAQVMREVSDFVG--DIPLVAHNASFDCKFWDAEVARINLQ--RCQEFACSLL 118 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR P + + L +L + + ++ R H AL D+ + + + + + G + G + Sbjct: 119 LARRLMPLAPSHKLGALIEFAKLPVAGR-AHRALADAEMAASL-LAYLAGELRSKHGIQQ 176 Query: 188 NEDRFFKEEKK 198 ++ + Sbjct: 177 VTHELLRKIQG 187 >gi|260426760|ref|ZP_05780739.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] gi|260421252|gb|EEX14503.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] Length = 468 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 7/176 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60 + + VFD ETTGL D +++IGAV +L+ + + P G + Sbjct: 269 TPLSALSYTVFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGEVLDLLVDP-GIPIPASSS 327 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++H +TD + KP F F + + +AHNA FD+ F+ R+ + P Sbjct: 328 RVHKVTDAMVAGKPDIGEAGRRFHRF--AKGSVIVAHNAPFDMAFLRRHRDRMGVEWDHP 385 Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I+DT+ ++ +S + L++LC+R G+ I +H AL D++ + V + M+ Sbjct: 386 --ILDTVLLSAVLFGASETHTLDALCQRLGVEIPQALRHTALGDANATAQVLVMML 439 >gi|148269564|ref|YP_001244024.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1] gi|147735108|gb|ABQ46448.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1] Length = 186 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 9/181 (4%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59 + N V D ETTG D DRI+EI AV + N+ F + P R Sbjct: 1 MIWNDTVFCVVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIR-IPALV 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGI++ +++ P ++++ F D+ + + HNA FD+ F++ + P+ Sbjct: 60 QKVHGISNMDIEEAPDMDAVYNLFRDYV--KGTVLVFHNANFDLTFLDMMAKETGNFPI- 116 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDTL ++ + L LC+R GI + R H AL D+ + + V++K++ Sbjct: 117 TNPYIDTLDLSEEIF-GRPHSLKWLCERLGIKTTIR--HRALPDALVTARVFVKLVEFLG 173 Query: 180 Q 180 + Sbjct: 174 E 174 >gi|33241759|ref|NP_876700.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae TW-183] gi|33236268|gb|AAP98357.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila pneumoniae TW-183] Length = 232 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG + DRIIEI A S T+ +F ++ P EA K+HGIT + Sbjct: 5 IFYDTETTGTQIERDRIIEIAAY----NSVTDESFLTYVNPEI-PIPDEASKIHGITTDA 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + F F +++ +AHN FD + E +R + +PL +R ID+L Sbjct: 60 VLSAPKFPEAYEGFRKFCG-EDSILVAHNNDGFDFPLLGKECRRHSLEPL-TNRTIDSLK 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 A++ P +++L L + YG + H AL D +L V+ ++ Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVVILHKVFTSLIG 164 >gi|257090540|ref|ZP_05584901.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188] gi|256999352|gb|EEU85872.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188] gi|315578691|gb|EFU90882.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX0630] Length = 929 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + D F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYDFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|239932092|ref|ZP_04689045.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC 14672] Length = 327 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 10/188 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ L + + + P P + +HG+T E Sbjct: 23 YAVVDVETTGL-ARDDRIVSAAVYRLDARGEVEDHWYTVVNPER---DPGPVWIHGLTSE 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + EF + +AHNA FD I E R + + + T++ Sbjct: 79 ALEGAPLFRDVAEEFATRL--EGRVLVAHNAVFDWQMIAREYARA-RSEAPVKQRLCTIA 135 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + L SL +G+ R H AL D+ +L++ + + + Sbjct: 136 LSKELGLPLPNHKLESLAAHFGVV--QRRAHHALDDARVLAEAFRPSLRAAAASGVRLPL 193 Query: 188 NEDRFFKE 195 +E R E Sbjct: 194 HECRPLTE 201 >gi|261417986|ref|YP_003251668.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus sp. Y412MC61] gi|319767201|ref|YP_004132702.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y412MC52] gi|261374443|gb|ACX77186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y412MC61] gi|317112067|gb|ADU94559.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y412MC52] Length = 909 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 9/178 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D+ETTG K DRII++G + D R F F P + +L I Sbjct: 4 RFVIIDLETTGNGPKKGDRIIQLGMAVVEDGLIVER-FASFFNPE-QPIPLFIQQLTNIN 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++ P F+ E A ++AHN FD+ F+ AEL+R P IDT Sbjct: 62 EQMVEGAPLFADKAGEIAALM--HGAYFVAHNVDFDLPFLQAELERAGWPPFA-GPTIDT 118 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + +AR P+ L L ++ G+ H H A D+ + + ++I ++ S++ Sbjct: 119 VELARIVLPTAESYKLGDLARQLGLR--HDRPHQADSDAEVTAKLFIALLKRLSRLPL 174 >gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815] gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815] Length = 392 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + RI E+G VE+ ++ + P G+ P +L GIT++ Sbjct: 15 IVFVDLETTGGSVGDHRITEVGVVEVGPNG--VSSWTTLVDP-GQPIPPFIQQLTGITND 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+F +I ++ F +IAHNA FD GF+ +E QR ++ T+ Sbjct: 72 MVRGAPTFEAIAADL--FARLDGKLFIAHNASFDRGFLRSEFQRAGFAFNPD--VLCTVR 127 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P R+ L++L +R+ + S R H AL D+ LL + ++ Sbjct: 128 LSRALFPAEKRHGLDALVERHALMPSDR--HRALADADLLWQFWQRL 172 >gi|107022085|ref|YP_620412.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116689029|ref|YP_834652.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3] gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia MC0-3] Length = 375 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 91/172 (52%), Gaps = 10/172 (5%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ + D+ETTG + RI EIG VE+ T+ + P G+ P +L Sbjct: 10 ASEQPLVFVDLETTGGSLADHRITEIGVVEI--GPLGVSTWTSLVNP-GQAIPPFIQQLT 66 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI+D ++D P+F+S+ ++ + ++AHNA FD GF+ AE +R + Sbjct: 67 GISDAMVRDAPTFASLAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGLAFNPD--V 122 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + T+ ++R P SR+ L++L +R+G+ + ++H AL D+ LL + ++ Sbjct: 123 LCTVRLSRALFPRESRHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172 >gi|229157184|ref|ZP_04285264.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342] gi|228626248|gb|EEK82995.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342] Length = 315 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P R L GIT+ Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQ-FVSYVNPE-RSIPDRITSLTGITNY 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D + + F F + +AHNA FD+ F+ + + ++ P +++IDT+ Sbjct: 68 RVSDARTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLSL-PEPKNKVIDTVF 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +A++ + L +L + GI +S H A D + VY K Sbjct: 125 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQK 167 >gi|24373798|ref|NP_717841.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] gi|24348190|gb|AAN55285.1|AE015666_9 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1] Length = 212 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 9/173 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL + R IEIGAV + T R F + P G + + GI+++ Sbjct: 14 VVLDFETSGLSPNQGARAIEIGAVLIEQGQITTR-FSELMNP-GFRINAFIEDYTGISNQ 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + F +F + +AHNA FD F++AE I + +L Sbjct: 72 MLAHAAPCAEVMARFAEFIGKH--HLVAHNAAFDQRFLDAEFAHIGHQY--SGQFGCSLL 127 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +ARR +P + + L +L + + + + H AL D+ + ++++M+ Q Sbjct: 128 LARRLYPEAINHQLATLVRHKQLPN-NGTFHRALADAEMTGHLWLRMLADLKQ 179 >gi|115350920|ref|YP_772759.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD] gi|115280908|gb|ABI86425.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] Length = 375 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 10/170 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + + D+ETTG S RI EIG VE+ T+ + P G+ P +L GI Sbjct: 12 EQPLVFVDLETTGGSSAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQSIPPFIQQLTGI 68 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D+ ++D PSF+S+ ++ + ++AHNA FD GF+ AE +R ++ Sbjct: 69 SDDMVRDAPSFASLAPTLFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLC 124 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ ++R P R+ L++L +R+G+ + ++H AL D+ LL + ++ Sbjct: 125 TVRLSRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172 >gi|154487101|ref|ZP_02028508.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis L2-32] gi|154084964|gb|EDN84009.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis L2-32] Length = 256 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 9/165 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ETTG +DRI+EIGA+ + + R + + P R E +L+G+TD L+ Sbjct: 89 IDLETTGFSPSDDRIVEIGAIRVRNGRPVKR-YSQLINPQ-RPLPEEITRLNGLTDADLR 146 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++P+ + +F F N I HN +FD F+ A R+ + ++ IDTL + Sbjct: 147 NQPTVDQVLPDFIRFIG--NDTLIGHNINEFDAAFLLANTTRLGMRHIG-NKTIDTLPLD 203 Query: 131 RRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R +P ++ L + +R+GI + H A D+ + Y M Sbjct: 204 RALYPEEPKHRLVDIIRRFGI--AQTESHRAADDALQTAQCYETM 246 >gi|307717400|gb|ADN88753.1| DNA polymerase III [Listeria seeligeri] Length = 231 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 8/171 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F ++ + +AHNA FD+GFIN +++ P + ++DTL +AR Sbjct: 59 SDPIDVVLKRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELARF 115 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +P + LN+L K++ I + H A+ D+ + + K++ +++ Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLGWKLIKDAKEMH 164 >gi|307717334|gb|ADN88720.1| DNA polymerase III [Listeria seeligeri] gi|307717336|gb|ADN88721.1| DNA polymerase III [Listeria seeligeri] gi|307717366|gb|ADN88736.1| DNA polymerase III [Listeria seeligeri] gi|307717402|gb|ADN88754.1| DNA polymerase III [Listeria seeligeri] gi|307717406|gb|ADN88756.1| DNA polymerase III [Listeria seeligeri] Length = 231 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 8/171 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + D IIE+ V++ + ++ F+ F+ P G S + L GITD+ +K Sbjct: 1 DVETTGLSAVYDTIIELAGVKMKNGEIIDK-FEAFIDP-GHPLSATTINLTGITDDMVKG 58 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 + F ++ + +AHNA FD+GFIN +++ P + ++DTL +AR Sbjct: 59 SDPIDVVLKRFKEW--SADDILVAHNASFDMGFINTAYEKVGI-PKAENAVVDTLELARF 115 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +P + LN+L K++ I + H A+ D+ + + K++ +++ Sbjct: 116 LYPHFKNHRLNTLTKKFNIILEQH--HRAVFDAEATAYLGWKLIKDAKEMH 164 >gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae KM-6054] Length = 329 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 10/164 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL ++DR+I G +L + + + P P + +HG+T E Sbjct: 25 FAVVDVETTGL-GRSDRVISAGVYQLDPDGEITDHWYTLVNPQR---DPGPVWIHGLTSE 80 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+F + +EF + ++ +AHNA FD I+ E R + + T+ Sbjct: 81 VLAGAPTFPEVAAEFAERLRDR--VLVAHNALFDWNMISREFSRAGLRA-PVEQRLCTMV 137 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +AR P L+SL + + R H AL D+ +L++V+ Sbjct: 138 LARDLRLPLPNGKLSSLAAHF--DVRQRQAHHALDDARVLAEVF 179 >gi|254000498|ref|YP_003052561.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4] gi|253987177|gb|ACT52034.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4] Length = 470 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 10/166 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG DRI EI + + + +R +Q + P P +L GI D Sbjct: 5 YVLLDLETTGATPLVDRITEIALIRFENGQEVSR-WQTLVNPETA-IPPFIQRLTGIDDG 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + E + + A AHN +FD GF+ E +RI D +++ T+ Sbjct: 63 MVATAPRFREVAGELLNHL--EGAVLCAHNVRFDHGFLKNEFKRIGIDL--RQKVLCTVK 118 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++R+ +P R + L+S+ +R+ + ++H A+ D L D +++ Sbjct: 119 LSRKLYPQHRSHSLDSIIERHSLQC--GARHRAMGDVVALVD-FLR 161 >gi|164686248|ref|ZP_02210278.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM 16795] gi|164601850|gb|EDQ95315.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM 16795] Length = 174 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 9/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + N + IV D+ETTGLD + I + + +K R + + P G Sbjct: 1 MNKYNDDKYIVVDLETTGLDPFSGCEIIEIGITEIVNNKIGRNYSRLVKPKG-IIPSHIT 59 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + IT++ ++D S ++ F + + IAHNAKFD+ F+N L + + ++ Sbjct: 60 NITSITNDMVEDAESLETVLPNFRKYVG--DTTIIAHNAKFDLKFLNYYLDLLGLEKINN 117 Query: 121 SRIIDTLSIARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I TL + +R + L + C Y I H H A D+ + +++ + Sbjct: 118 --HICTLEMLKRCKSYKGKNKKLETACNYYNIVNEH--AHRANSDTLATAKLFLTI 169 >gi|120435022|ref|YP_860708.1| exonuclease family protein [Gramella forsetii KT0803] gi|117577172|emb|CAL65641.1| exonuclease family protein [Gramella forsetii KT0803] Length = 457 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 10/170 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + D K F + P + P + L GI ++ Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKF-DGQKVVDQFISLVNPE-QPIQPFVVNLTGINND 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ P F + + ++ +AHNAKFD + E +R+ + + + T+ Sbjct: 60 MLKNAPKFYEVAKRIVEI--TEDCILVAHNAKFDYRILRTEFRRLGFEY--ERKSLCTVE 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++++ P L L + GI +S R H A D+ ++ KM++ Sbjct: 116 LSKKLIPGLPSYSLGKLVRSLGIPLSDR--HRAAGDAQATIKLF-KMLLA 162 >gi|329929867|ref|ZP_08283543.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp. HGF5] gi|328935845|gb|EGG32306.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp. HGF5] Length = 971 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 9/209 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +M+ V D ETTG + D II++G + + +R + ++ P G P L GI Sbjct: 13 EMKFAVLDFETTG-NQSADEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGI 70 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + D PS + E + + + HN FD F+ L R P RI+D Sbjct: 71 SDSDVADAPSLEEMMMELVPMLD--DVVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILD 127 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-F 183 T+ + PS L + +G + H H A D+ + +K + ++ Sbjct: 128 TMHFLKICFPSLPSYQLGMVSSHFG--LEHDRPHQADSDALATAYALLKCLEEIDELPLL 185 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 + D F E+ ++ D+ L Sbjct: 186 TIQRLSDLFADEDSDLAWFFDGIRSDREL 214 >gi|218134802|ref|ZP_03463606.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC 43243] gi|217990187|gb|EEC56198.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC 43243] Length = 237 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + DRIIE+GA + ++ + F F+ P SP L GITDE Sbjct: 5 YVAIDLETTGTNPAEDRIIEVGAAK-VECGRVVSIFSTFVNPQI-SISPRITSLTGITDE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + I ++ + ++ + HN FD FI + IDTL Sbjct: 63 DVAGAPVIADIIADMIAY--TKDVPILGHNVIFDYSFIKKAAANSKLEYAKEG--IDTLK 118 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IARR P + L +LC+ + I H AL D+ S +Y + Sbjct: 119 IARRILPDVPHKNLPALCEHFKIDP--GKSHRALDDAISASKLYYAL 163 >gi|118586857|ref|ZP_01544291.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163] gi|290890494|ref|ZP_06553569.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429] gi|118432689|gb|EAV39421.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163] gi|290479890|gb|EFD88539.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429] Length = 1437 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 10/184 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +FDIETTGL + ND+II++ AV++ + TF F+ P G S + + L GITD+ Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKMKNG-VVLDTFDQFINP-GFPLSEQTINLTGITDD 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K+ + + F F+ HN KFD GF+N L ++K P + +IDTL Sbjct: 468 LVKNSKPEAEVLKMFQQFYA--GTILAGHNVIKFDYGFVNHALA-VHKLPKINTLVIDTL 524 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++AR +P+ R L+ L K++ + + H H A+ DS + + + + ++ N+G Sbjct: 525 NLARWLYPNFGRYTLDFLSKKFSVNLEHH--HRAIDDSTATGML-LHIFLKEAEENYGVV 581 Query: 187 TNED 190 +E Sbjct: 582 YDEQ 585 >gi|134093833|ref|YP_001098908.1| putative DNA polymerase/helicase [Herminiimonas arsenicoxydans] gi|133737736|emb|CAL60781.1| putative DNA-polymerase/ribonuclease/exonuclease [Herminiimonas arsenicoxydans] Length = 193 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + I D+ETTG + NDRI EIG V + +R + F+ P GR L GI+D Sbjct: 6 KLIFIDLETTGANLINDRITEIGIVTVNADGDIDR-WSSFVNP-GRPIPSFIQDLTGISD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P+F ++ + ++ +IAHNA+FD GF++ L R ++ T+ Sbjct: 64 RMVATAPTFETLADTVRERL--EDGLFIAHNARFDYGFLHHALARAGHAL--SIDVLCTV 119 Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++RR P R++L++L R+G+ ++H AL D+ LL ++ K+ Sbjct: 120 KLSRRFFPEEKRHNLDTLIARHGLVPE--ARHRALADADLLWQLWEKLTA 167 >gi|229012784|ref|ZP_04169953.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048] gi|228748465|gb|EEL98321.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048] Length = 318 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 19/208 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG + ND+II++ AV+ ++ ++ F ++ P L GIT+ Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQ-FVSYVNPE-LSIPDRITSLTGITNY 70 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F F + +AHNA FD+ F+ + + + P + +IDT+ Sbjct: 71 RVSDAPTIEEVLPLFLAFLHTN--VIVAHNASFDMRFLKSNVNMLGL-PEPKNNVIDTVF 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A++ + L +L + GI +S H A D + VY K Sbjct: 128 LAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFDDCITCAAVYQKC----------AAV 174 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215 E+ K K+ + ++ + K + R Sbjct: 175 EEEGKRKANKEVLDETAVFEAVKEMLVR 202 >gi|149277808|ref|ZP_01883948.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39] gi|149231496|gb|EDM36875.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39] Length = 456 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 9/158 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V DIETTG + + I EI + + + ++ + P G+ L GI+ Sbjct: 1 MLYAVVDIETTGGHASGNGITEISILVH-NGHSIVQNYETLINP-GQYIPAHIEALTGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E ++ PSF+ + +E + +++ ++AHN FD FI +L + R + T Sbjct: 59 NEMVETAPSFNQVAAEVYQLLHDK--IFVAHNVNFDFSFIRHQLGVCGYEL--SCRKLCT 114 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLD 163 + ++R+ P R L LC I++++R H A D Sbjct: 115 VRMSRKIIPGHRSYSLGKLCAALNISLNNR--HRAGGD 150 >gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Nocardia farcinica IFM 10152] gi|54015198|dbj|BAD56568.1| putative DNA polymerase III subunit [Nocardia farcinica IFM 10152] Length = 598 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 17/205 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + D I EIGAV++ F + P GR P +++ GIT Sbjct: 27 FVVVDLETTGTSPEGDAITEIGAVKVRGGEVLGE-FATLVNP-GRAIPPAVVQVTGITTA 84 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P ++ F +F A +AHNA+FD P + ++ T+ Sbjct: 85 LVYAAPRIEAVLPGFLEF--AAGAVLVAHNARFDTA-FLRAAAARCALPWPDAPVLCTVK 141 Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +ARR L SL + G S + H AL D+ DV ++ N G Sbjct: 142 LARRVLGRDEAPSVRLASLARLLG--ASTQPTHRALDDARATVDVLHALI--ARVGNQGV 197 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 + E +P++S +R K Sbjct: 198 HS-----LTELMDYLPDVSAGQRAK 217 >gi|312140182|ref|YP_004007518.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S] gi|311889521|emb|CBH48838.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S] Length = 577 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 13/210 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +V D+ETTG S++D I EIGAV++ + P GR P ++ Sbjct: 22 TPLRETTFVVVDLETTGGSSESDAITEIGAVKVRGGEVLGE-LGTLVDP-GRAIPPYIVE 79 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT ++ P ++ F +F A +AHNA FDVGF+ A R P Sbjct: 80 LTGITTAMVRTAPRIDTVLPAFLEFAG--GAVLVAHNAGFDVGFLKAAAARQGL-PWPKF 136 Query: 122 RIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +++ T+ +ARR + + H AL D+ DV ++ G Sbjct: 137 QVLCTVKLARRVLGRDEAPSVKLSALAALLGADTTPTHRALDDARATVDVLHALI--GRV 194 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 N G + E +P ++ +R K Sbjct: 195 GNQGVHS-----LPELLDYLPRVTSEQRAK 219 >gi|212635482|ref|YP_002312007.1| DNA polymerase III [Shewanella piezotolerans WP3] gi|212556966|gb|ACJ29420.1| DNA polymerase III [Shewanella piezotolerans WP3] Length = 222 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IV D ETTGL + DR IEIGAV+ L + FQ + P G + S GI+++ Sbjct: 25 IVLDFETTGLSPNQGDRAIEIGAVK-LQHGIVVDRFQELMNP-GFRISGFIESYTGISNQ 82 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + F DF + N +AHNA FD F++AEL I ++ ++ Sbjct: 83 MLNNAAPCEEVMERFADFIADYN--MVAHNASFDQRFLDAELNSIGREY--RGEFACSML 138 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR + + L SL I H AL DS + +D+++ M+ Sbjct: 139 IARRLYQEAPNHKLGSLINYKQIK-HDGVFHRALADSEMTADLWLVML 185 >gi|253577523|ref|ZP_04854836.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14] gi|251843063|gb|EES71098.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14] Length = 951 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 9/215 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D ETTG + +D II++G + ++ ++ F+ P G P L GIT Sbjct: 1 MKYAVLDFETTG-NQSSDDIIQVGLAIIEPDRSISQVYRSFVKP-GVPIPPFITGLTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE +KD P + E N + + HN FD ++ + L + P RI+DT Sbjct: 59 DEDVKDAPELDEVMMEMVPLLN--DVVLVGHNVAFDFNYLQSALDKTGYLPF-TGRILDT 115 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FG 184 + + PS + L + + + H H A D+ + +++K + ++ Sbjct: 116 MDFLKILFPSLTSYQLGMVAAEF--EVEHERPHQADSDALATALIFLKCLEECDRLPLLT 173 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + D F E+ + ++K +++ Sbjct: 174 LQRLADLFAGEDSDLGWFFDAMVQEKEREALPSED 208 >gi|171315543|ref|ZP_02904779.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] gi|171099380|gb|EDT44118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] Length = 375 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + + D+ETTG S RI EIG VE+ T+ + P G+ P +L GI Sbjct: 12 EQPLVFVDLETTGGSSAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQSIPPFIQQLTGI 68 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +DE ++D PSF+S+ ++ + ++AHNA FD GF+ AE R ++ Sbjct: 69 SDEMVRDAPSFASLAPTLFERLD--GKLFVAHNASFDRGFLRAEFDRAGIAFNPD--VLC 124 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ ++R P R+ L++L +R+G+ + ++H AL D+ LL + ++ Sbjct: 125 TVRLSRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172 >gi|315146656|gb|EFT90672.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis TX4244] Length = 929 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + + F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQEGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|46198769|ref|YP_004436.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus HB27] gi|55980782|ref|YP_144079.1| DNA polymerase III subunit epsilon-like protein [Thermus thermophilus HB8] gi|46196392|gb|AAS80809.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus HB27] gi|55772195|dbj|BAD70636.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus HB8] Length = 624 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 14/175 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEAL 60 + +++ FD+ETTGLD + D ++ + V +L + F+ + P GR SP A Sbjct: 433 VPLDQLLYTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALVNP-GRPISPAAT 491 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HG+T E L+DKP ++ F F Q+ +AHN FD+ F+ +R D Sbjct: 492 AVHGLTAEMLRDKPPLEAVLPAFRAFV--QDTVLVAHNGAFDLAFL----RRAGLDQPPL 545 Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +A+ P + L +L R+G+ + R H AL D+ + ++V+++M Sbjct: 546 LDTL---LLAQLLFPDLKDYRLEALAHRFGVPATGR--HTALGDALMTAEVFVRM 595 >gi|325128513|gb|EGC51390.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568] Length = 470 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+IE+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVIEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R+ P+ + + Sbjct: 85 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|256961321|ref|ZP_05565492.1| DNA polymerase III [Enterococcus faecalis Merz96] gi|293383606|ref|ZP_06629516.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis R712] gi|293387281|ref|ZP_06631838.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis S613] gi|312906156|ref|ZP_07765168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 512] gi|312909501|ref|ZP_07768356.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 516] gi|256951817|gb|EEU68449.1| DNA polymerase III [Enterococcus faecalis Merz96] gi|291079118|gb|EFE16482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis R712] gi|291083318|gb|EFE20281.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis S613] gi|310627802|gb|EFQ11085.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 512] gi|311290174|gb|EFQ68730.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis DAPTO 516] Length = 929 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 8/181 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 K+K V D+ETTG D +DRII+ G V + + F + PN + + L Sbjct: 8 KDKQVYAVVDLETTGTDPTSDRIIQFGCVLVQEGKIIAN-FATDVNPN-QVVPKQIQSLT 65 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++ ++ P F + + + ++ ++AHN FD F+ EL R PL Sbjct: 66 GISNTQVQKAPYFEDVAHTIYHYL--EDTIFVAHNVHFDYNFLARELVRCGTPPLTI-PA 122 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P+ ++ L+ L + G +SH + H A D+ + +++ + + + Sbjct: 123 IDTVELAQIFLPTEKSFRLSDLSESLG--LSHENPHQADSDAQVTAELLLLIQEKMKSLP 180 Query: 183 F 183 Sbjct: 181 L 181 >gi|297625374|ref|YP_003687137.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921139|emb|CBL55686.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 203 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 12/206 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + DRIIEIG V L + + + P A ++H IT Sbjct: 4 YAVLDLETTGFSPARGDRIIEIGLVRLDPQGHVDDEWSTLVNPRRTV---RATRVHHITS 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126 + P+ + + D ++ +AHN+ FDVGF+ AEL+ P +P + T Sbjct: 61 ADVAAAPTMAELAPGLVDKLRDR--VVVAHNSSFDVGFLTAELRTAGMTIPPEPIPSVCT 118 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY-IKMMVGGSQINFGF 185 + + R + L C+ G+++ R H AL D+ ++++ + G ++ + Sbjct: 119 MRQSTRFLHARSRRLVDCCEAAGVSL--RDAHSALGDARATAELFGHYLRAAGGELPWQD 176 Query: 186 KTNEDRFFKEEKK--TVPNISLLKRD 209 + R + + P L++R Sbjct: 177 VVDRARRYPWPQALFVEPQTHLVQRP 202 >gi|302387397|ref|YP_003823219.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] gi|302198025|gb|ADL05596.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] Length = 222 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG+ D I+EI A+++ + + P G A +++GITD+ Sbjct: 18 YVVFDLETTGISPAEDSILEISAIKVKGHEPVAE-LNTLVNP-GTHIPAGATRINGITDD 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K P + +F F + + HN FD+ F+ Q + + P+ +DTL Sbjct: 76 MVKAAPGLKEVLPDFLSFI--EGEILVGHNIQSFDLLFLYRAAQELFGKEV-PNDYVDTL 132 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A+ P R+ L + + I H AL D + Y +M Sbjct: 133 FMAKTTLPQLGRHRLTDISAYFHINTEG--AHRALSDCVMNQKCYEQM 178 >gi|283796625|ref|ZP_06345778.1| DNA polymerase III PolC-type [Clostridium sp. M62/1] gi|291076048|gb|EFE13412.1| DNA polymerase III PolC-type [Clostridium sp. M62/1] Length = 251 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 94/220 (42%), Gaps = 21/220 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D+ETTGLD K D+IIE+GA L++ K R + P+ R+ S L GIT Sbjct: 18 YAAIDLETTGLDPKRDKIIEVGAC-LVEQGKVKRELSFLINPH-REISERVELLTGITGR 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + E F E + H+ FD F+ IDTLS Sbjct: 76 MVEHAPGIEEVIGEIAAFVGE--LPLLGHHVIFDYSFLKHAAVNAGLPFEKNG--IDTLS 131 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + RR P + +L++ C + I + H AL D+ +Y + + F+ Sbjct: 132 LCRRFMPPEEKKNLSAACGWFQIPRE--TAHRALADAKAAHLLYQSL------RDCHFQE 183 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 NE+ F + P I +KR++P R KE L E K Sbjct: 184 NEEAFAAK-----PLIYKVKREQPASKR-QKEGLRELAKY 217 >gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus XylebKG-1] gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus XylebKG-1] Length = 341 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 12/212 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + P P + +HG+T + Sbjct: 19 YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNPER---DPGPVWIHGLTSD 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + E ++ +AHNA FD I E R + + + T++ Sbjct: 75 VLEGAPLFPEVAEELSARLADR--VLVAHNAAFDWSMIAREYARASVVA-PVEQRLCTIA 131 Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ + P + L SL +G+ + H AL D+ +L++ + + ++ Sbjct: 132 LAKELRLPLPNHKLASLAAHFGVV--QQRAHHALDDARVLAEAFRPSLHAAARGGVRLPL 189 Query: 188 NEDRFFKE--EKKTVPNISLLKRDKPLFTRIT 217 E R E + P + +P R + Sbjct: 190 LECRPLTEWSDSPVTPRVGYQPSRQPNSWRPS 221 >gi|218289182|ref|ZP_03493418.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius LAA1] gi|218240765|gb|EED07944.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus acidocaldarius LAA1] Length = 952 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 8/180 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I+ D ETTGL+ + I+EIGA+ + + TF + P R E +L G++ Sbjct: 1 MEWIIVDFETTGLEPERAEILEIGALRVR-GGEIVDTFHTLVRPE-RPIPDEITRLTGLS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + PS F F + H+ F+ F+ R PL P + T Sbjct: 59 DTDVAGAPSEREALMRFATFAG--DTPMAGHHWAFERSFLRDRASRYGL-PLQPGDGLCT 115 Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L++AR P + L L +R + H AL D+H + +++ ++ G Sbjct: 116 LNLARILAPRLMSHRLEYLARRLCLRAE--ISHRALADAHTAHQLLMRLENKARRLPSGV 173 >gi|255038895|ref|YP_003089516.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM 18053] gi|254951651|gb|ACT96351.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM 18053] Length = 174 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 10/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG RI EI AV D ++ F + P P +L GI +E Sbjct: 2 YAIVDIETTGG-GGTSRITEI-AVFRHDGARIVDFFHSLINPEIY-IPPFITRLTGIDNE 58 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+F + ++A ++AHNAKFD GFI E + D ++ T+ Sbjct: 59 MVKDAPTFYEVQDAVRAM--TRDAWFVAHNAKFDYGFIKREFGAL--DEYFQRDLLCTVQ 114 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++R+ P + L +LC+ I I +R H A D+ ++ K+++ Q Sbjct: 115 LSRKIFPGLKSYSLGNLCESLEIMIENR--HRAHGDAEATVRLFEKLLLHDRQ 165 >gi|269956916|ref|YP_003326705.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM 15894] gi|269305597|gb|ACZ31147.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica DSM 15894] Length = 547 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 11/210 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL + DR+IE+ + L +T + L P A +HGITD Sbjct: 49 FAVVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWSTRLNPQRTV---GATWIHGITDA 105 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + PSF+ + ++ A ++ HNA+FD GF+ AEL R D +P+ + Sbjct: 106 DVAHAPSFADVAAQVAQRL--TGAVFVGHNARFDAGFVLAELTRAGWDAPEPTIWCTQAA 163 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +S L + GI+++H H AL D+ + M+ + G Sbjct: 164 SHHWLPDASSRRLVDVAAAAGISLTH--AHSALGDARATA----AMLTRYIGASTGVDRL 217 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 +D P + P+ + Sbjct: 218 DDLAAVAAATAWPERAARTALGPVTIDVPP 247 >gi|189425539|ref|YP_001952716.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ] gi|189421798|gb|ACD96196.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ] Length = 168 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 9/171 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R IV D ETTGL +N R+IEIGAV + + T + +G S A ++HGI+ Sbjct: 3 RVIVVDTETTGLSVRNQGRVIEIGAVAVENGQITAE-LATLIN-SGTPISYGAYRVHGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ L +P+ ++ F +F N+ +AHNA FD FIN EL + +P T Sbjct: 61 EQMLAGRPTPQEVWPWFLEFAG--NSPLVAHNAAFDRAFINHELHLLGMSLANP--WHCT 116 Query: 127 LSIARRKHPSS-RNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++RRK P + L ++ K +G +H AL D+ + + V+++++ Sbjct: 117 VRLSRRKLPRLMNHKLETVYKHLFGELPEEVQRHRALDDARMAARVWVELL 167 >gi|91795118|ref|YP_564769.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] gi|91717120|gb|ABE57046.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans OS217] Length = 204 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 11/182 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M N +V D ETTGL DR IEIGAV+L+D + +FQ + P R NS Sbjct: 1 MTLANN--VVVLDFETTGLSPDMGDRAIEIGAVKLVDGQVVD-SFQALINPGQRVNS-FI 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + GI+++ LKD P + + +F +F N +AHNA FD F++AE Sbjct: 57 EQYTGISNQMLKDAPRSNVVMGQFTEFIAGFN--LVAHNASFDKKFLDAEFSANKLS--Y 112 Query: 120 PSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + +L ++RR + + L +L + + + H AL D+ + +++++ + Sbjct: 113 SGQFACSLLLSRRISQEAPNHKLGTLIQHHQLANDG-VFHRALADATMTANLWLHQVSLL 171 Query: 179 SQ 180 Q Sbjct: 172 QQ 173 >gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC 33331] Length = 346 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 10/202 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + P P + +HG+T + Sbjct: 32 YAVVDVETTGL-ARDDRIISAAVYRLDARGDVEDHWYTLVNPER---DPGPVWIHGLTSD 87 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + +E + + +AHNA FD I E R + + T++ Sbjct: 88 VLEGAPLFPQVAAELSERLAGR--VLVAHNAAFDWSMIAREYARA-AVTAPVEQRLCTIA 144 Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ + P + L SL +G+ H H AL D+ +L++ + + ++ Sbjct: 145 LAKELRLPLPNHKLESLAAHFGVVQQH--AHHALDDARVLAEAFRPSLHAAAKGGVRLPL 202 Query: 188 NEDRFFKEEKKTVPNISLLKRD 209 E R E + R Sbjct: 203 LECRPLTEWYDSPVTPRAGYRP 224 >gi|325676936|ref|ZP_08156608.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707] gi|325552236|gb|EGD21926.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707] Length = 577 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 87/210 (41%), Gaps = 13/210 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +V D+ETTG S++D I EIGAV++ + P GR P ++ Sbjct: 22 TPLRETTFVVVDLETTGGSSESDAITEIGAVKVRGGEVLGE-LGTLVDP-GRAIPPYIVE 79 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT ++ P ++ F +F A +AHNA FDVGF+ A R P Sbjct: 80 LTGITTAMVRTAPRIDTVLPAFLEFAG--GAVLVAHNAGFDVGFLKAAAARQGL-PWPKF 136 Query: 122 RIIDTLSIARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +++ T+ +ARR + + H AL D+ DV ++ G Sbjct: 137 QVLCTVKLARRVLGRDEAPSVKLSALAALLGADTTPTHRALDDARATVDVLHALI--GRV 194 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 N G + E +P +S +R K Sbjct: 195 GNQGVHS-----LPELLDYLPRVSSEQRAK 219 >gi|295092491|emb|CBK78598.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium cf. saccharolyticum K10] gi|295115331|emb|CBL36178.1| exonuclease, DNA polymerase III, epsilon subunit family [butyrate-producing bacterium SM4/1] Length = 251 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 94/220 (42%), Gaps = 21/220 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 D+ETTGLD K D+IIE+GA L++ K R + P+ R+ S L GIT Sbjct: 18 YAAIDLETTGLDPKRDKIIEVGAC-LVEQGKVKRELSFLINPH-REISERVELLTGITGR 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + E F E + H+ FD F+ IDTLS Sbjct: 76 MVEHAPGIEEVIGEIAAFVGE--LPLLGHHVIFDYSFLKHAAVNAGLPFEKNG--IDTLS 131 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + RR P + +L++ C + I + H AL D+ +Y + + F+ Sbjct: 132 LCRRFMPPEEKKNLSAACGWFQIPRE--TAHRALSDAKAAHLLYQSL------RDCHFQE 183 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKT 227 NE+ F + P I +KR++P R KE L E K Sbjct: 184 NEEAFAAK-----PLIYKVKREQPASKR-QKEGLRELAKY 217 >gi|197337514|ref|YP_002157585.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11] gi|197314766|gb|ACH64215.1| DNA polymerase III epsilon subunit [Vibrio fischeri MJ11] Length = 212 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 9/169 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + DR IEIGAV+L + +R FQ + P G + S GI++ Sbjct: 16 VVLDFETTGLSPNQGDRAIEIGAVKLENGVVVDR-FQGLMNP-GFRVSSFIENYTGISNR 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D S + +EF +F Q +AHNA FD F++ EL I ++ +L Sbjct: 74 MLADAASCDEVMNEFANFI--QGCNLVAHNASFDKRFLDGELALIQREY--DGDFACSLL 129 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++RR +S + L L + I H AL D+ + + +++ ++ Sbjct: 130 VSRRLTQEASSHKLGDLVAYHQIENDG-VFHRALADAEVTASLWLVLLE 177 >gi|237804887|ref|YP_002889041.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/TZ1A828/OT] gi|231273187|emb|CAX10100.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/TZ1A828/OT] Length = 250 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 6/183 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ + + D ETTGLD K DR+IE A+ + + + + + P R S E+ Sbjct: 1 MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFT-FDEIIDSVEFLIHPE-RAVSAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+H I+D L+DKP F +FS FF E++ + H+ FD+ ++ E +R+ + L Sbjct: 59 KIHKISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPK 117 Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IDTL +A+ S N L +L + + + H+ H A+ D + V+ + Sbjct: 118 HHYVIDTLRLAKEYGDSPNNSLEALARHFNVP--HQGNHRAMKDVEMNVKVFKHLTKRFR 175 Query: 180 QIN 182 ++ Sbjct: 176 TLS 178 >gi|239940309|ref|ZP_04692246.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] Length = 341 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 12/212 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + P P + +HG+T + Sbjct: 19 YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNPER---DPGPVWIHGLTSD 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + E ++ +AHNA FD I E R + + + T++ Sbjct: 75 VLEGAPLFPEVAEELSARLADR--VLVAHNAAFDWSMIAREYARASVVA-PVEQRLCTIA 131 Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ + P + L SL +G+ + H AL D+ +L++ + + ++ Sbjct: 132 LAKELRLPLPNHKLASLAAHFGVV--QQQAHHALDDARVLAEAFRPSLHAAARGGVRLPL 189 Query: 188 NEDRFFKE--EKKTVPNISLLKRDKPLFTRIT 217 E R E + P + +P R + Sbjct: 190 LECRPLTEWSDSPVTPRVGYRAVRQPNSWRPS 221 >gi|261406087|ref|YP_003242328.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. Y412MC10] gi|261282550|gb|ACX64521.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp. Y412MC10] Length = 958 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 8/178 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D ETTG + D II++G + + +R + ++ P G P L GI+ Sbjct: 1 MKFAVLDFETTG-NQSADEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D PS + E + + + HN FD F+ L R P RI+DT Sbjct: 59 DSDVADAPSLEEMMMELVPMLD--DVVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILDT 115 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + PS L + +G + H H A D+ + +K + ++ Sbjct: 116 MHFLKICFPSLPSYQLGMVSSHFG--LEHDRPHQADSDALATAYALLKCLEEIDELPL 171 >gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 11379] gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL 15998] Length = 343 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 12/212 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + P P + +HG+T + Sbjct: 21 YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNPER---DPGPVWIHGLTSD 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + E ++ +AHNA FD I E R + + + T++ Sbjct: 77 VLEGAPLFPEVAEELSARLADR--VLVAHNAAFDWSMIAREYARASVVA-PVEQRLCTIA 133 Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ + P + L SL +G+ + H AL D+ +L++ + + ++ Sbjct: 134 LAKELRLPLPNHKLASLAAHFGVV--QQQAHHALDDARVLAEAFRPSLHAAARGGVRLPL 191 Query: 188 NEDRFFKE--EKKTVPNISLLKRDKPLFTRIT 217 E R E + P + +P R + Sbjct: 192 LECRPLTEWSDSPVTPRVGYRAVRQPNSWRPS 223 >gi|291456364|ref|ZP_06595754.1| exonuclease, DNA polymerase III, epsilon subunit family [Bifidobacterium breve DSM 20213] gi|291381641|gb|EFE89159.1| exonuclease, DNA polymerase III, epsilon subunit family [Bifidobacterium breve DSM 20213] Length = 235 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 11/172 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG I EIGAV + ++ FQ + P + L GITD Sbjct: 34 YVALDLETTGFYPNRCAITEIGAVRVRGGRVVDQ-FQQLINPLC-PIPRQITALTGITDA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + +F + + NA + HN FD+ F++ + I Sbjct: 92 MVADHDPIDGVLPQFISWLADSNAAAETEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 150 Query: 124 IDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 DT+ I+R P S + L L R+GI + +H AL D+ + M Sbjct: 151 YDTMQISRALFPKQSHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM 200 >gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B] gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B] Length = 298 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 18/177 (10%) Query: 1 MIRKNKMRKI-----VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 M KN ++I V D ETTGL S D IIEIG +++ D +R + + P+ + Sbjct: 1 MANKNYTKQIINDYCVLDTETTGLSSYYDEIIEIGILKVRDNKIVDR-YSQLIKPD-YEI 58 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 L GIT+E +K+ P+ + + S+ F + I HN FD+ F+NA Sbjct: 59 DSFITSLTGITNEMVKEMPAINFVMSDVLSFIGKD--VIIGHNTSFDIRFLNA-----GF 111 Query: 116 DPLDPSRIIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + ++ +DT+ AR+ P ++ L+ L G++ + H ++ D ++Y Sbjct: 112 NIELDNKYMDTMQFARKLFPELKHHRLSDLTSYLGLSNNE---HRSIADCIATKELY 165 >gi|315127113|ref|YP_004069116.1| hypothetical protein PSM_A2044 [Pseudoalteromonas sp. SM9913] gi|315015627|gb|ADT68965.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 718 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 9/156 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG +RI EIG V++ + T+ + P R L GI D Sbjct: 554 YSVVDIETTGGLKGGNRITEIGIVKIKQGEIVD-TWTTLINPE-RPIPRFITSLTGINDA 611 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P FS I + + + + ++AHN FD GFI EL+RI + P + T+ Sbjct: 612 MVSNAPIFSEIAAPLLNQLS--GSIFVAHNVNFDYGFIKKELERIGINFKMP--KLCTVV 667 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLD 163 +R+ + L +L + + +++ H AL D Sbjct: 668 ESRKAFKGLKSYSLGNLSAHFNLDLTNH--HRALDD 701 >gi|308049989|ref|YP_003913555.1| RNAse T [Ferrimonas balearica DSM 9799] gi|307632179|gb|ADN76481.1| RNAse T [Ferrimonas balearica DSM 9799] Length = 222 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 21/200 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53 + N+ R +V D+ET G +++ D ++EI AV L + + ++T + P G Sbjct: 9 LLSNRFRGYYPVVIDVETAGFNAQTDALLEIAAVTLKMDEQGWLQPDQTIHFHVAPFEGA 68 Query: 54 KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVG 104 P AL+ +GITD F L+ S SE + + +AHNA FD Sbjct: 69 NLEPAALEFNGITDPFSALRGAVSEREALSEIFKLVRKGQKAAGCNRSIIVAHNATFDQS 128 Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+NA +R + + P P DT +++ + L C+ GI ++ H AL Sbjct: 129 FVNAASERTKMKRVPFHPFGTFDTAALSGLAL--GQTVLAKACRAAGIPFDNKEAHSALY 186 Query: 163 DSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 187 DTQRTAELFCYIVNRWKALG 206 >gi|227873963|ref|ZP_03992179.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268] gi|227840171|gb|EEJ50585.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268] Length = 178 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 9/174 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R IVFD+ET + KN+RI IG + +++ K ++ F + P +KL GI+ Sbjct: 3 RFIVFDVETP--NRKNNRISAIG-ITVVEEGKISKEFYSLVNPET-NFDYFNVKLTGISK 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +KD P+F ++ + F++ +AHNA FD+ + L D +R + T+ Sbjct: 59 ASVKDAPTFPELWQQIEPLFSDGM--LVAHNASFDMNVLKNCLLDYEIDWKPYARYLCTV 116 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + R P + LN +C+ +GI++ H H A DSH +++ ++ + G+++ Sbjct: 117 KMGRSLFPDRSHKLNMVCEDFGISLQH---HRADSDSHACAEILLRYLEAGAEV 167 >gi|166154751|ref|YP_001654869.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu] gi|166155626|ref|YP_001653881.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336025|ref|ZP_07224269.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1] gi|165930739|emb|CAP04236.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu] gi|165931614|emb|CAP07190.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 250 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 6/183 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ + + D ETTGLD K DR+IE A+ + + + + + P R S E+ Sbjct: 1 MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFT-FDEIIDSVEFLIHPE-RAVSAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+H I+D L+DKP F +FS FF E++ + H+ FD+ ++ E +R+ + L Sbjct: 59 KIHKISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPK 117 Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IDTL +A+ S N L +L + + + H+ H A+ D + V+ + Sbjct: 118 HHYVIDTLRLAKEYGDSPNNSLEALARHFNVP--HQGNHRAMKDVEMNVKVFKHLTKRFR 175 Query: 180 QIN 182 ++ Sbjct: 176 TLS 178 >gi|149372989|ref|ZP_01891945.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] gi|149354349|gb|EDM42916.1| DNA polymerase III, epsilon subunit [unidentified eubacterium SCB49] Length = 472 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 10/198 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + V D+ETTG R+ EI + + + + + + P L GITD Sbjct: 7 KFTVIDVETTGG-VGQGRMTEICIITVENMEIVD-VWSSLINPEIY-IPQHITALTGITD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + D P F + + + ++A ++AHN FD GF+ E I + + T+ Sbjct: 64 QMVTDAPRFCDVAAIIEE--KTRDAIFVAHNVNFDYGFLKKEFDLIGASF--SRKKLCTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++R+ P L+ LC+ GI++ H A D+ + ++++++ S NF Sbjct: 120 RLSRKLIPGLPSYSLSKLCRSIGISLLD--AHRAEADTRATTTLFLQLLEKDSVANFEVF 177 Query: 187 TNEDRFFKEEKKTVPNIS 204 N E P+I+ Sbjct: 178 LNFLNKSSREATLPPHIN 195 >gi|308235755|ref|ZP_07666492.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14018] Length = 301 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 13/164 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL + D IIEIG + + + +R + + P+ + L GIT++ Sbjct: 16 YCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDR-YDQLIKPSI-EVDGFITALTGITND 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D PS SS+ ++ F +E + HN FD+ F+N ++ +DT+ Sbjct: 74 MLEDMPSISSVKNDVLSFISED--IILGHNTSFDMRFLNE-----GFKEQLSNQYMDTMQ 126 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 AR+ +P ++ L+ L G+ H ++H AL D ++Y Sbjct: 127 FARKLYPELKHHRLSDLTDYLGL---HNNEHRALADCIATKELY 167 >gi|313673170|ref|YP_004051281.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312939926|gb|ADR19118.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 226 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 95/186 (51%), Gaps = 12/186 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGLD +II + AV++ + + + VF+ P G+ PE++K HGITDE Sbjct: 44 FCVVDTETTGLDINTAKIINLAAVKIKGFKIID-YYNVFINP-GKSIDPESIKWHGITDE 101 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KDKP + EF F + + + H+ KFDV I+ EL L + +DT+ Sbjct: 102 MVKDKPFVVEVMPEFVKFIRK--SVIVGHHIKFDVDMISKELMETFGCSL-KQKCLDTMF 158 Query: 129 IARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 I R + L+ L Y + + R H AL D+ ++V+ KM++ QI+ FK Sbjct: 159 IYTRGIAKKNDHVGLDFLLDLYKVRCNGR--HTALGDAMATAEVFNKMVM---QISDRFK 213 Query: 187 TNEDRF 192 T D + Sbjct: 214 TVRDLY 219 >gi|124265242|ref|YP_001019246.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] gi|124258017|gb|ABM93011.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] Length = 208 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 7/168 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTG+ + R EI AV + R +Q + +G P +L GI++ Sbjct: 4 IAVIDFETTGISPGQGARATEIAAVLVRGGQIVGR-YQSLMN-SGAWVPPFIEQLTGISN 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L+ P + E DF +AHNA FD GF AE R D TL Sbjct: 62 RMLERAPPAERVMREVLDF--TAGCPLVAHNAAFDRGFWQAERARAGCDEDAAHAFACTL 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR +P + L +L K + + R H AL D+ + + ++M Sbjct: 120 LLARRLYPEAPNHRLGTLAKLHALPDGGR-AHRALADAETAAHLLLRM 166 >gi|315612858|ref|ZP_07887769.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sanguinis ATCC 49296] gi|315314968|gb|EFU63009.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sanguinis ATCC 49296] Length = 830 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 105/238 (44%), Gaps = 13/238 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ R +V D+E T SK +II++G V + + ++ + + P+ Sbjct: 1 MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD+ L P FS + + ++ ++ ++AHN +FD + L + P Sbjct: 58 ELTGLTDQRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P + +L LC+ GI + H H AL D+ +++ + M Sbjct: 116 --RVDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYMRQKLF 171 Query: 180 QINFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236 ++ G ++ D ++ I + + + L + EL H ++ K + Sbjct: 172 ELPKGLLESLLDLADNLLYESYLVIEEVYQQQSLLSSPDLMEL--HGLFLRKESKGLV 227 >gi|325288177|ref|YP_004263967.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489] gi|324323631|gb|ADY31096.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489] Length = 454 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ DIETTG + I EI A+ D K F + P ++ P +KL GI D+ Sbjct: 2 YVILDIETTGGKFNEEGITEI-AIHRFDGHKVVDKFISLVNPE-KEIQPFVVKLTGINDK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I + ++A +AHNA+FD + E +R+ + + + T++ Sbjct: 60 MLRTAPKFYEIAKRIVEI--TEDAVLVAHNAQFDYRILRTEFRRLGYNF--ERKTLCTVN 115 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +++ P L L + GI +S R H A D+ ++ ++ Sbjct: 116 LSKELIPDKESYSLGKLVRSLGIPVSDR--HRANGDALATLQLFKLLLA 162 >gi|311114663|ref|YP_003985884.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019] gi|310946157|gb|ADP38861.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019] Length = 307 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 13/164 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL + D IIEIG + + + +R + + P+ + L GIT++ Sbjct: 22 YCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDR-YDQLIKPSI-EVDGFITALTGITND 79 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D PS SS+ ++ F +E + HN FD+ F+N ++ +DT+ Sbjct: 80 MLEDMPSISSVKNDVLSFISED--IILGHNTSFDMRFLNE-----GFKEQLSNQYMDTMQ 132 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 AR+ +P ++ L+ L G+ H ++H AL D ++Y Sbjct: 133 FARKLYPELKHHRLSDLTDYLGL---HNNEHRALADCIATKELY 173 >gi|315646467|ref|ZP_07899585.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex V453] gi|315278110|gb|EFU41430.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex V453] Length = 961 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ V D ETTG + D II++G + + +R + ++ P G P L GI+ Sbjct: 1 MKFAVLDFETTG-NQSADEIIQVGLAIIEEDRSISRVYGTYVNP-GIPIPPFITGLTGIS 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D PS + E + + + HN FD F+ L R P RI+DT Sbjct: 59 DSDVADAPSLEEMMMELVPMLD--DVVLVGHNVAFDFNFLQNALDRCGYLPFS-GRILDT 115 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + PS S L + +G + H H A D+ + +K + ++ Sbjct: 116 MHFLKICFPSLSSYQLGMVSSHFG--LEHDRPHQADSDALATAYALLKCLEEIDELPL 171 >gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis BCW-1] Length = 324 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 82/210 (39%), Gaps = 10/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ +L + + P P + +HG+T + Sbjct: 22 YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTLVNPQR---DPGPVWIHGLTSD 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P FS I E + + +AHNA FD + E R + + T++ Sbjct: 78 TLADAPLFSEIADELAQHLDGR--VLVAHNAVFDWSMLAREYARAG-SAAPVRQRLCTIA 134 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + L SL YG+ H AL D+ +L++ + + + Sbjct: 135 LSKELGLPLPNHKLESLAAHYGVV--QERAHHALDDARVLAETFRPSLHAAAAGGLRLPL 192 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 + E I + + R + Sbjct: 193 LACQPLTEWSDAPRPIGYQRSYRATSWRAS 222 >gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49] Length = 374 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + + D+ETTG S RI EIG VE+ T+ + P G+ P +L GI Sbjct: 12 EQPLVFVDLETTGGSSVEHRITEIGVVEI--GPLGVSTWTSLVNP-GQSIPPFIQQLTGI 68 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++ ++D PSF+S+ ++ + ++AHNA FD GF+ AE +R ++ Sbjct: 69 SEAMVRDAPSFASLAPALFERLD--GKLFVAHNASFDRGFLRAEFERAGLAFNPD--VLC 124 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ ++R P SR+ L++L +R+G+ + ++H AL D+ LL + + Sbjct: 125 TVRLSRALFPRESRHGLDALIERHGLVPA--ARHRALADADLLWQFWRHL 172 >gi|291561902|emb|CBL40706.1| exonuclease, DNA polymerase III, epsilon subunit family [butyrate-producing bacterium SS3/4] Length = 247 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG+ +++++I EIG V+++D +T T+ + P+ R+ ++L GITD+ Sbjct: 9 YVALDLETTGIGARHEKITEIGMVKVIDG-ETTDTYHTMVNPH-REIPKRIVELTGITDD 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P I E F ++ + H FD GF+ +N+ +DTL Sbjct: 67 MVKDAPGIEEILDEVLAF--TEDLPLLGHQIIFDYGFLVQAA--VNQKRKFEKYGVDTLK 122 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + R P + +L++ C + ++ + H AL D++ ++Y ++ Sbjct: 123 LCRYLMPGEEKKNLSAACAYF--EVTQDTAHRALSDAYAAHNLYQEL 167 >gi|260063099|ref|YP_003196179.1| hypothetical protein RB2501_15959 [Robiginitalea biformata HTCC2501] gi|88784668|gb|EAR15838.1| hypothetical protein RB2501_15959 [Robiginitalea biformata HTCC2501] Length = 375 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 9/170 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V DIETTG + I EI A+ D + TF + P R P KL GI Sbjct: 1 MTYAVLDIETTGGKFDEEGITEI-AIHRFDGHEVVDTFISLINPE-RPIQPYVQKLTGID 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ P F + + +++ +AHNA+FD + E +R+ + + + T Sbjct: 59 PKMVQTAPRFHQVAKRIVEI--TRDSVLVAHNAQFDYRILRTEFRRLGYNF--ERKTLCT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +++R P + L L + GI +S+R H A D+ + ++ Sbjct: 115 VDLSQRLIPDAESHSLGKLVRSLGIPVSNR--HRANGDALATLKLLQHLL 162 >gi|146293210|ref|YP_001183634.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32] gi|145564900|gb|ABP75835.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32] Length = 212 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 9/201 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL + R IEIGAV + + T R F + P G + S GI+++ Sbjct: 14 VVLDFETSGLSPNQGARAIEIGAVLIENGVITQR-FSELMDP-GFRISSFIEDYTGISNQ 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ + + F DF + +AHNA FD F++AE I+ + + +L Sbjct: 72 MLRNAAPCHEVMARFADFIGDN--HLVAHNAAFDQRFLDAEFAHIHHEY--QGQFACSLL 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +ARR +P + N + RY ++ + H AL D+ + +++ M+ Q +F + Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLADL-QRDFAITSP 186 Query: 189 EDRFFKE-EKKTVPNISLLKR 208 ++ +KT +++ R Sbjct: 187 PFSLMQKITQKTKADVAKFIR 207 >gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 345 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 12/202 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ G +L + + + P P + +HG+T Sbjct: 40 YAVVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTLVNPER---DPGPVWIHGLTTG 95 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P F I E ++ +AHNA FD + E R + R + T++ Sbjct: 96 VLKDAPLFKDISDELSARLADR--VLVAHNAAFDWSMLAREYARAERVAPVRQR-LCTIA 152 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + L SL +G+ H AL D+ +L++ + +V + Sbjct: 153 LSKELGLPLPNHKLESLAAHFGVV--QERAHHALDDARVLAEAFRPSLVAAAGGGVRLPL 210 Query: 188 NEDRFFKE--EKKTVPNISLLK 207 E R E E P I Sbjct: 211 LECRPLTEWSEPPATPRIGRQP 232 >gi|76789273|ref|YP_328359.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13] gi|255311354|ref|ZP_05353924.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276] gi|255317655|ref|ZP_05358901.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s] gi|255348913|ref|ZP_05380920.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70] gi|255503453|ref|ZP_05381843.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s] gi|255507132|ref|ZP_05382771.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923] gi|76167803|gb|AAX50811.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13] gi|289525581|emb|CBJ15059.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2] gi|296435141|gb|ADH17319.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150] gi|296436069|gb|ADH18243.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768] gi|296436997|gb|ADH19167.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222] gi|296437930|gb|ADH20091.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074] gi|296438861|gb|ADH21014.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023] gi|297140430|gb|ADH97188.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301] Length = 250 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 6/183 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ + + D ETTGLD K DR+IE A+ + + + + + P R S E+ Sbjct: 1 MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFT-FDEIIDSVEFLIHPE-RAVSAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+H I+D L+DKP F +FS FF E++ + H+ FD+ ++ E +R+ + L Sbjct: 59 KIHKISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPK 117 Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IDTL +A+ S N L +L + + + H+ H A+ D + V+ + Sbjct: 118 HHYVIDTLRLAKEYGDSPNNSLEALARHFNVP--HQGNHRAMKDVEMNVKVFKHLTKRFR 175 Query: 180 QIN 182 ++ Sbjct: 176 TLS 178 >gi|77360920|ref|YP_340495.1| hypothetical protein PSHAa1996 [Pseudoalteromonas haloplanktis TAC125] gi|76875831|emb|CAI87052.1| conserved protein of unknown function; putative enzyme [Pseudoalteromonas haloplanktis TAC125] Length = 730 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG ++I EIG V+ + + K T+ + P R L GI+D Sbjct: 567 YSVVDLETTGALKGGNKITEIGLVK-VQHGKVIDTWTTLVNPQ-RHIPGFITSLTGISDS 624 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P F+ I + ++AHN FD GFI E + P + T+ Sbjct: 625 MVSNAPVFADIVKPLMAKLA--GSIFVAHNVNFDYGFIKKECEMAKVPFKMP--KLCTVV 680 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R+ + L +L K + + ++ S H AL D+ + + + + Sbjct: 681 ESRKAFAGLKSYSLGNLSKHFNLNLT--SHHRALADATATAQLLLLI 725 >gi|160878305|ref|YP_001557273.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans ISDg] gi|160426971|gb|ABX40534.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans ISDg] Length = 235 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + DIE+TGL + DRIIEI A+ +D K F+ + P G +L GIT Sbjct: 1 MNFLAIDIESTGLSPEKDRIIEIAAIRYIDG-KPKERFEKLINP-GCPLPERITELTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ L + + EF F E + HN D FI R+ + IDT Sbjct: 59 EDMLAGAMTEREVIKEFLTFAGED--VLLGHNVSVDFSFIKTAADRLKIGY--ERQGIDT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L ++R + +L S+C+ YGI H AL D+ + +Y K+ Sbjct: 115 LYLSRTLKSDLEKKNLESMCEHYGIIRE--CSHRALEDAIAAATLYQKL 161 >gi|15605265|ref|NP_220051.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D/UW-3/CX] gi|3328974|gb|AAC68138.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX] gi|297748666|gb|ADI51212.1| Exonuclease family protein [Chlamydia trachomatis D-EC] gi|297749546|gb|ADI52224.1| Exonuclease family protein [Chlamydia trachomatis D-LC] Length = 250 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 6/183 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ + + D ETTGLD K DR+IE A+ + + + + + P R S E+ Sbjct: 1 MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFT-FDEIIDSVEFLIHPE-RAVSAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+H I+D L+DKP F +FS FF E++ + H+ FD+ ++ E +R+ + L Sbjct: 59 KIHKISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPK 117 Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IDTL +A+ S N L +L + + + H+ H A+ D + V+ + Sbjct: 118 HHYVIDTLRLAKGYGDSPNNSLEALARHFNVP--HQGNHRAMKDVEMNVKVFKHLTKRFR 175 Query: 180 QIN 182 ++ Sbjct: 176 TLS 178 >gi|237802965|ref|YP_002888159.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis B/Jali20/OT] gi|231274199|emb|CAX10993.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis B/Jali20/OT] Length = 250 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 6/183 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ + + D ETTGLD K DR+IE A+ + + + + + P R S E+ Sbjct: 1 MVLLKDVEFVCLDCETTGLDVKKDRVIEFAAIRFT-FDEIIDSVEFLIHPE-RAVSAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 K+H I+D L+DKP F +FS FF E++ + H+ FD+ ++ E +R+ + L Sbjct: 59 KIHKISDAMLRDKPKFGEVFSRIKGFFKERD-HIVGHHVGFDLQVLSQESERLGETLLPK 117 Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IDTL +A+ S N L +L + + + H+ H A+ D + V+ + Sbjct: 118 HHYVIDTLRLAKEYGDSPNNSLEALARHFNVP--HQGNHRAMKDVEMNVKVFKHLTKRFR 175 Query: 180 QIN 182 ++ Sbjct: 176 TLS 178 >gi|161870374|ref|YP_001599545.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 053442] gi|161595927|gb|ABX73587.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 053442] Length = 187 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 93/187 (49%), Gaps = 11/187 (5%) Query: 63 HGITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 HG+T E L K+ P F+ + + DF + AE I HNAKFDVGF+N E +R+ ++ Sbjct: 2 HGLTIEVLEGKNAPPFAEVGRQIADFL--RGAELIIHNAKFDVGFLNMEFRRMGLPTVEE 59 Query: 121 --SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + DTL++AR P + L++LC R+ + S R HGAL+D LL +VY+ M Sbjct: 60 LGCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQ 119 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAIWD 238 + E K E K V + + K R + EL H + + LG+ IW Sbjct: 120 FDL-----MGEAAEEKMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEACIWR 174 Query: 239 RYISSNQ 245 + ++ Sbjct: 175 KEAVPSE 181 >gi|121635139|ref|YP_975384.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18] gi|120866845|emb|CAM10604.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18] gi|325132197|gb|EGC54893.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190] gi|325138130|gb|EGC60703.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis ES14902] gi|325198587|gb|ADY94043.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136] Length = 470 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVVGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R+ P ++ + Sbjct: 85 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSP--VLCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|116491013|ref|YP_810557.1| DNA polymerase III, alpha subunit ( type) [Oenococcus oeni PSU-1] gi|116091738|gb|ABJ56892.1| DNA polymerase III, alpha subunit (gram-positive type) [Oenococcus oeni PSU-1] Length = 1437 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 10/184 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +FDIETTGL + ND+II++ AV++ + TF F+ P G S + + L GITD+ Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKMKNG-VVLDTFDQFINP-GFPLSEQTINLTGITDD 467 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K+ + + F F+ HN KFD GF+N L ++K P + +IDTL Sbjct: 468 LVKNSKPEAEVLKMFQQFYAR--TILAGHNVIKFDYGFVNHALA-VHKLPKINTLVIDTL 524 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++AR +P+ R L+ L K++ + + H H A+ DS + + + + ++ N+G Sbjct: 525 NLARWLYPNFGRYTLDFLSKKFSVNLEHH--HRAIDDSTATGML-LHIFLKEAEENYGVV 581 Query: 187 TNED 190 +E Sbjct: 582 YDEQ 585 >gi|291276271|ref|YP_003516043.1| DNA polymerase III subunit epsilon [Helicobacter mustelae 12198] gi|290963465|emb|CBG39295.1| Putative dna polymerase III epsilon subunit [Helicobacter mustelae 12198] Length = 247 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 8/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 DIETTG + IIEIGA++ + TF+ + + +L GI Sbjct: 67 FCFVDIETTGSKPNHSSIIEIGAIKYHGGEIID-TFETLV--FSQSVPENITELTGIDAG 123 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D PS + F F N+ ++AHN FD GFI+ L R N +P + + T+ Sbjct: 124 MLADAPSEREVLQRFRKFLG--NSVFVAHNVVFDYGFISDRLLRYN-EPYLLNPRLCTVE 180 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +ARR S+R L L GI I +H AL D+ + V+ Sbjct: 181 LARRGILSARYSLGHLNAFLGIGID--KQHRALSDAFICLKVF 221 >gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] gi|302442614|gb|EFL14430.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] Length = 332 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 12/198 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ L + + P + P +HG+T Sbjct: 27 YAVVDVETTGL-ARDDRIVSAAVYRLDAQGNVEDHWYTLVNP---RRDPGPTWIHGLTSA 82 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P F+ I EF ++ +AHNA FD I E R + + + T++ Sbjct: 83 MLQDAPLFADIAEEFAGRLADR--VLVAHNAIFDWQMIAREYARAS-ATAPVRQRLCTIA 139 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + L SL YG+ + H AL D+ +L++ + + ++ Sbjct: 140 LSKELNLPLPNHKLESLAAHYGVV--QQRAHHALDDARVLAEAFRPSLHAAARDGVRLPL 197 Query: 188 NEDRFFKE--EKKTVPNI 203 E R E + P + Sbjct: 198 LECRPLTEWSDSPATPRV 215 >gi|270290279|ref|ZP_06196504.1| DnaQ family exonuclease/DinG family helicase [Pediococcus acidilactici 7_4] gi|270281060|gb|EFA26893.1| DnaQ family exonuclease/DinG family helicase [Pediococcus acidilactici 7_4] Length = 927 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 11/212 (5%) Query: 6 KMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K R V D+ETTG + RII+IG ++ + T+Q + P +L G Sbjct: 3 KTRYAVVDLETTGTGSVEESRIIQIGC-AFIEGDQITETYQTKINPQ-MTIPKRISRLTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD+ ++ P F+ + + + ++AHN FD F+N EL R LD + I Sbjct: 61 ITDQQVRQAPKFADVADKIYQKLA--GTVFVAHNVNFDFPFLNRELVRSGYPELDL-KAI 117 Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DT+++++ +R L L I H H A D+ + +++K+ S++ Sbjct: 118 DTVTLSQVLFSRTRGYRLRDLTNYLHIE--HDDPHSADSDAVATAHLFLKIKAALSELP- 174 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 T E ++ + ++L+ R Sbjct: 175 -IVTLEQLVKLGDQLPLQTATILEAALQKSKR 205 >gi|89898431|ref|YP_515541.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56] gi|89331803|dbj|BAE81396.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56] Length = 228 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 90/216 (41%), Gaps = 16/216 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRIIEI A + T +F ++ P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIIEIAAF----NNVTKESFVTYVNPKI-PIPEEASKIHGITTST 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + +F DF + A +AHN FD + E +R + +PL R ID+L Sbjct: 60 VASAPDFPEAYKQFRDFCGNE-AVLVAHNNDGFDFPLLEKECRRHSLEPL-TLRTIDSLK 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 A++ P +++L L + YG + H AL D L DV+ ++ S Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHDVFSALIGDLSAEQVLALM 175 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 E K K + K T + + Sbjct: 176 EESCHPKTFK-----MPFGKYKGKPLTEVPASYIQW 206 >gi|332653359|ref|ZP_08419104.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcaceae bacterium D16] gi|332518505|gb|EGJ48108.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcaceae bacterium D16] Length = 1396 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 85/164 (51%), Gaps = 9/164 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIETTGLD + + IIEIGA L + T TF F+ P GR SPE + L GITDE Sbjct: 371 IVCFDIETTGLDKRREVIIEIGAAVLKNGEVT-ETFNTFVAP-GRILSPEIIHLTGITDE 428 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L PS F DF ++ AHNA+FD+GFI+ ++ +PS ID+L Sbjct: 429 MLVGAPSQEEALRAFLDFVGDR--PLAAHNAEFDMGFISTGCRKYGIPFTNPS--IDSLI 484 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +A+ P + L+ + + + + H A D+ ++ + Sbjct: 485 LAQNLLPELGKYKLDIVAEYLQLPAFNH--HRASDDAATVAYML 526 >gi|304384907|ref|ZP_07367253.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] gi|304329101|gb|EFL96321.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] Length = 927 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 11/212 (5%) Query: 6 KMRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K R V D+ETTG + RII+IG ++ + T+Q + P +L G Sbjct: 3 KTRYAVVDLETTGTGSVEESRIIQIGC-AFIEGDQITETYQTKINPQ-MTIPKRISRLTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD+ ++ P F+ + + + ++AHN FD F+N EL R LD + I Sbjct: 61 ITDQQVRQAPKFADVADKIYQKLA--GTVFVAHNVNFDFPFLNRELVRSGYPELDL-KAI 117 Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DT+++++ +R L L I H H A D+ + +++K+ S++ Sbjct: 118 DTVTLSQVLFSRTRGYRLRDLTNYLHIE--HDDPHSADSDAVATAHLFLKIKAALSELP- 174 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 T E ++ + ++L+ R Sbjct: 175 -IVTLEQLVKLGDQLPLQTATILEAALQKSKR 205 >gi|34556664|ref|NP_906479.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM 1740] gi|34482378|emb|CAE09379.1| DNA POLYMERASE III EPSILON SUBUNIT DNAQ [Wolinella succinogenes] Length = 206 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + R + D+ET G D+IIEIGA+ + +F+ ++ ++ K+ GI Sbjct: 13 EQRFCIVDVETNGSLPAKDQIIEIGAILYQGGKIID-SFESYV--FCKEVPEYITKITGI 69 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E LKD PS + + F F +A ++AHNA FD GF+ A ++R D L +R + Sbjct: 70 TSEELKDAPSMKEVLTRFRLFLG--DAVFVAHNALFDYGFLGAMMKRSGMDRLH-NRKLC 126 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 T+ +AR+ P+ R L+ L + I H A D+ V+ + + Sbjct: 127 TIDLARKTIPADRYGLSFLNEFLEIHTE--VSHRAYADALTALRVFEESLR 175 >gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1] Length = 334 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 12/212 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL ++ DRI+ L + + P P + +HG+T + Sbjct: 31 YAVVDVETTGL-AREDRIVSAAVYRLDAQGNVEDHWYTLVNPQR---DPGPVWIHGLTSD 86 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P F I EF ++ +AHNA FD I E R + + + T++ Sbjct: 87 MLQDAPLFKDIAGEFAGRLADR--VLVAHNAIFDWQMIAREYARAE-ETAPVRQRLCTIA 143 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + L SL +G+ + H AL D+ +L++ + + ++ Sbjct: 144 LSKELNLPLPNHKLESLAAHFGVV--QQRAHHALDDARVLAEAFRPSLHAAARDGVRLPL 201 Query: 188 NEDRFFKE--EKKTVPNISLLKRDKPLFTRIT 217 E R E + P I + R + Sbjct: 202 LECRPLTEWSDSAVTPRIGYQSSYRGGGWRPS 233 >gi|284048335|ref|YP_003398674.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM 20731] gi|283952556|gb|ADB47359.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM 20731] Length = 223 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 11/171 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP----NGRKNSPEALKLHG 64 +V D+ETTGLD + D+IIEIGA+E+ + RTF L P G+ SP +L G Sbjct: 25 YVVVDLETTGLDPERDQIIEIGALEVTAGKR-GRTFSTLLQPRTPLEGQYVSPFITRLTG 83 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+E L P F F + A + +N FD+GF+ + Q PL + + Sbjct: 84 ITNEMLAAAPQPRQALEAFGKFLGSRVA--VGYNVGFDMGFLQQQFQDQLYRPLA-NDWV 140 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D L +A+ P + LN+L Y + ++ H AL D + K+ Sbjct: 141 DVLPMAQTLFPLWDHHRLNNLAAWYHVE--NKEAHRALSDVETTETCFRKL 189 >gi|224826335|ref|ZP_03699437.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224601436|gb|EEG07617.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 476 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 13/178 (7%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + + D+ETTG DRI EIG + L+D + R ++ + P G+ P + GI Sbjct: 4 EQPCAIVDLETTGGHITRDRITEIGIL-LIDGERIER-YETLVNP-GQPIPPFIENMTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +D + + P F+++ + Q +AHNA+FD GF+ E +R + S ++ Sbjct: 61 SDAMVAEAPPFAALVETLLE--KLQGRLLLAHNARFDYGFLKNEFKRAGH--VFQSEVLC 116 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 T+ ++RR +P ++ L+SL R+GI ++ R H A+ D+ VY + +++ Sbjct: 117 TVKLSRRLYPQHFKHSLDSLIARHGIVLADR--HRAMADALA---VYHFIEAATAELG 169 >gi|324995504|gb|EGC27416.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK678] Length = 814 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLSQAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAESLFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|167628537|ref|YP_001679036.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1] gi|167591277|gb|ABZ83025.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1] Length = 255 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 17/188 (9%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAV---------ELLDYSKTNRTFQVFLCPNGRK 54 + +VFD ETTGL ND +I +G V E + + R F + P+ R Sbjct: 57 LRDITFVVFDTETTGLSVPNDDVIALGGVALPPGGEGAEWTEDTGKVRVFDRLVNPH-RP 115 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 A ++ GI D+ + +P+ + +F DF + A +AH FDVGF++ L+ + Sbjct: 116 IPVLAREITGIDDDMVFSQPTIYPVLDDFLDFID--GAVLVAHGIAFDVGFLDKYLRPLR 173 Query: 115 KDPLDPSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 P +IDT++++R P + + L++L YGIT R +H AL D+ + +D++ Sbjct: 174 TKLYHP--VIDTITLSRVLEPFRAEHSLDALVADYGITP--RRRHSALGDAQMTADLFAA 229 Query: 174 MMVGGSQI 181 M+V ++ Sbjct: 230 MLVRLQKL 237 >gi|119900237|ref|YP_935450.1| putative DNA-directed polymerase III [Azoarcus sp. BH72] gi|119672650|emb|CAL96564.1| putative DNA-directed polymerase III [Azoarcus sp. BH72] Length = 474 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 82/163 (50%), Gaps = 9/163 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R ++ D+ETTG DRI EI + ++ + + ++ + P G P + GI D Sbjct: 6 RYVLVDLETTGAHPLRDRITEIAILR-IERGQLVQRWESLINP-GVPIPPTIQGVTGIDD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P F+++ + + ++AHNA+FD GF+ + ++ P ++ T+ Sbjct: 64 TMVAGAPDFAAVADTVAALLD--DCVFVAHNARFDYGFLKTAYAALGREFDAP--VLCTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 ++R +P R+ L+++ +R+G+ ++H A+ D+ +L Sbjct: 120 KLSRALYPDHHRHGLDAIIERHGLAC--GARHRAMGDTEVLWQ 160 >gi|329847967|ref|ZP_08262995.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Asticcacaulis biprosthecum C19] gi|328843030|gb|EGF92599.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Asticcacaulis biprosthecum C19] Length = 708 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG + NDR+ EI AV++ + + P R+ +L GIT+E Sbjct: 543 YVVVDVETTGGRAVNDRVTEIAAVKVRGGKIIAE-WSSLINPE-RRIPGYITQLTGITNE 600 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F+ I + F + A ++AHN FD FI +E +R+ + + + T + Sbjct: 601 MVAGAPKFAEIADDLAAFLS--GAVFVAHNVNFDHSFIASEYRRLERRF--HAPKLCTCA 656 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRS 156 R+ +P L L K YGI + + Sbjct: 657 GMRKYYPGHGSYGLGPLSKEYGIRLENHH 685 >gi|304387160|ref|ZP_07369404.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC 13091] gi|304338764|gb|EFM04874.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC 13091] gi|325201850|gb|ADY97304.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240149] Length = 470 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R+ P+ + + Sbjct: 85 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|254805232|ref|YP_003083453.1| putative DNA polymerase III subunit [Neisseria meningitidis alpha14] gi|254668774|emb|CBA06684.1| putative DNA polymerase III subunit [Neisseria meningitidis alpha14] Length = 461 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R+ P+ + + Sbjct: 76 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LCS 131 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 132 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173 >gi|161870321|ref|YP_001599491.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442] gi|161595874|gb|ABX73534.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442] Length = 461 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R+ P+ + + Sbjct: 76 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA--LCS 131 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 132 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173 >gi|329901259|ref|ZP_08272784.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] gi|327549191|gb|EGF33783.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] Length = 462 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 12/188 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R D+ETTG + DRI E+G VE+ + R + + P+ R L GI++ Sbjct: 9 RLAFVDLETTGATAVIDRITEVGIVEVDEDG--VRHWSSLVNPH-RHIPEFIEGLTGISN 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P F + +E + ++AHNA+FD GF+ E +R+ D ++ T+ Sbjct: 66 AMVADAPGFDELAAEIHQRL--EGRIFLAHNARFDHGFLKNEFKRVGIDFRP--TVLCTV 121 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM--MVGGSQINFG 184 ++R+ +P ++++L++L +R+ + ++ R H AL D+ L+ + + +QIN Sbjct: 122 KLSRKLYPEFAKHNLDTLAERHQLQVTER--HRALGDAQLIWQFWETIHTTFPHAQINAA 179 Query: 185 FKTNEDRF 192 K R Sbjct: 180 IKELTARP 187 >gi|325136504|gb|EGC59108.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579] Length = 469 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 27 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 83 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R P+ + + Sbjct: 84 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 139 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 140 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 181 >gi|325130506|gb|EGC53261.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis OX99.30304] Length = 470 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|319410698|emb|CBY91078.1| putative DnaQ-like exonuclease [Neisseria meningitidis WUE 2594] Length = 461 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R P+ + + Sbjct: 76 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 132 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173 >gi|308389143|gb|ADO31463.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis alpha710] Length = 461 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R P+ + + Sbjct: 76 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 132 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173 >gi|261392288|emb|CAX49811.1| putative DnaQ-like exonuclease [Neisseria meningitidis 8013] Length = 470 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|254672325|emb|CBA05474.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria meningitidis alpha275] Length = 312 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R P+ + + Sbjct: 76 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 132 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173 >gi|254670274|emb|CBA05558.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria meningitidis alpha153] Length = 461 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R P+ + + Sbjct: 76 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 132 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173 >gi|218768453|ref|YP_002342965.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491] gi|121052461|emb|CAM08798.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491] Length = 470 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|306833904|ref|ZP_07467028.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis ATCC 700338] gi|304423905|gb|EFM27047.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis ATCC 700338] Length = 827 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 90/182 (49%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + + D+E TG + II++G V +++ + +T+Q + P+ S + Sbjct: 1 MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIV-IIENDEIVKTYQTDVNPHEA-LSEHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + E ++ ++ ++AHN KFD + +L + P Sbjct: 58 NLTGITDEQLAKAPDFSQVAQEIFNLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P+ + L +L + ++ H A+ D++ + +++K+ Sbjct: 116 --RVDTVELAQVFYPTFEKYSLGNLADVLALDLAD--AHTAISDAYATAQLFLKLKAKMK 171 Query: 180 QI 181 + Sbjct: 172 SL 173 >gi|194246482|ref|YP_002004121.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] gi|193806839|emb|CAP18268.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali] Length = 1522 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 10/176 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I KN M +VFDIETTG D+IIEI ++ + ++ F + P Sbjct: 410 ILKN-MEYVVFDIETTGFSKVRDKIIEISGFKIKNNIVIDQ-FYSLVNPEI-DLPENIYL 466 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L I +E LK+ P + +F F +N +AHNA FDV FI + +++N Sbjct: 467 LTKIKNETLKNAPKILQVLPDFLKFI--KNTCLVAHNASFDVSFIFEKSKQLNIS-FPLL 523 Query: 122 RIIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +IDTL++++ S L L ++ + + H A D+ +++++K++ Sbjct: 524 PVIDTLALSQYYFSSFMKFFSLKRLAAKFKVKLE--EHHRAKDDAKATTEIFMKIL 577 >gi|293365088|ref|ZP_06611805.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus oralis ATCC 35037] gi|291316538|gb|EFE56974.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus oralis ATCC 35037] Length = 830 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 105/238 (44%), Gaps = 13/238 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ R +V D+E T SK +II++G V + + ++ + + P+ Sbjct: 1 MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD+ L P FS + + ++ ++ ++AHN +FD + L + P Sbjct: 58 ELTGLTDQRLAVAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P + +L LC+ GI + H H AL D+ +++ + M Sbjct: 116 --RVDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYMRQKLF 171 Query: 180 QINFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236 ++ G ++ D ++ I + + + L + EL H ++ K + Sbjct: 172 ELPKGLLESLLDLADNLLYESYLLIEEVYQQQSLLSSPDLMEL--HGLFLRKESKALV 227 >gi|260578114|ref|ZP_05846035.1| exonuclease [Corynebacterium jeikeium ATCC 43734] gi|258603753|gb|EEW17009.1| exonuclease [Corynebacterium jeikeium ATCC 43734] Length = 198 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 26/187 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGL + +RIIEI A+ + + ++ + L PN E L GI+D Sbjct: 13 IVIDLETTGLRPQEERIIEIAALHIRNGELQDK-YTTLLNPN-LSVPQEITDLTGISDGL 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-------------WIAHNAKFDVGFINAELQRINK- 115 L DKP+FS + E +F + + HN FD F+ E+ R Sbjct: 71 LADKPTFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRTQLK 130 Query: 116 -----DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + R++ T +R P R L ++ I HR H A+ D+ Sbjct: 131 NSADANRPYTPRLVCTAEASRTLIPRESVGRYRLGNVASYLKIP--HRPLHRAMSDALAT 188 Query: 168 SDVYIKM 174 DV + Sbjct: 189 YDVLRAL 195 >gi|257867744|ref|ZP_05647397.1| DNA polymerase III [Enterococcus casseliflavus EC30] gi|257874072|ref|ZP_05653725.1| DNA polymerase III [Enterococcus casseliflavus EC10] gi|257801827|gb|EEV30730.1| DNA polymerase III [Enterococcus casseliflavus EC30] gi|257808236|gb|EEV37058.1| DNA polymerase III [Enterococcus casseliflavus EC10] Length = 918 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 8/174 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG DS DRII+ G V + D NR F + P+ R+ S + +L IT++ Sbjct: 5 YAVVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTHITNQ 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F I ++ + N ++AHN FD F++ E R PL IDT+ Sbjct: 63 QVSKAPYFEDIADTIYNLLS--NTIFVAHNIYFDYHFLSNEFVRCGLPPLSI-PGIDTVE 119 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +A+ P S L L I H + H A D+ + + +++ + Q+ Sbjct: 120 LAQVFLPTESSFRLGDLAD--SIGFRHDNPHQADSDAEVTAALFLYIEAIMRQL 171 >gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis MA-4680] gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces avermitilis MA-4680] Length = 325 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 11/200 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRII L + + + P P + +HG+T + Sbjct: 22 YAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTMVNPER---DPGPVWIHGLTSD 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I +EF ++ +AHNA FD I E R K + + T++ Sbjct: 78 VLEGAPLFEDIAAEFASRLADR--VLVAHNAVFDWSMIAREYARA-KSQAPVRQRLCTIA 134 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + L SL +G+ + H AL D+ +L++ + + ++ Sbjct: 135 LSKELGLPLPNHKLESLAAHFGVV--QQRAHHALDDARVLAEAFRPSLHAAARDGVRLPL 192 Query: 188 NEDRFFKEEKKTVPNISLLK 207 E E T P I Sbjct: 193 LECLPLTEWNAT-PRIGRQP 211 >gi|282861901|ref|ZP_06270964.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE] gi|282562926|gb|EFB68465.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE] Length = 333 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 10/211 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ L + + P P + +HG+T E Sbjct: 19 YAVVDVETTGL-ARDDRIVSAAVYRLDALGDVEDHWYTLVNPER---DPGPVWIHGLTSE 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + ++ + + + +AHNA FD + E R R+ Sbjct: 75 ALEGAPLFPEVAAQLSERLDGR--VLVAHNAAFDWSMLAREYARAAITAPVRQRLCTIAL 132 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 + P + L SL +G+ + H AL D+ +L++ + + ++ Sbjct: 133 SKELRLPLPNHKLESLAAHFGVV--QQRAHHALDDARVLAEAFRPSLHAAARGGVRLPLL 190 Query: 189 EDRFFKE--EKKTVPNISLLKRDKPLFTRIT 217 E R E + P + R + Sbjct: 191 ECRPLTEWTDSPVAPRVGYQPSRGQGTWRAS 221 >gi|120598713|ref|YP_963287.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1] gi|120558806|gb|ABM24733.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1] Length = 212 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 9/201 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL + R IEIGAV + + T R F + P G + S GI+++ Sbjct: 14 VVLDFETSGLSPNQGARAIEIGAVLIENGVITQR-FSELMGP-GFRISSFIEDYTGISNQ 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ + + F DF + +AHNA FD F++AE I+ + + +L Sbjct: 72 MLRNAAPCHEVMARFADFIGDN--HLVAHNAAFDQRFLDAEFAHIHHEY--QGQFACSLL 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +ARR +P + N + RY ++ + H AL D+ + +++ M+ Q +F + Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLADL-QRDFAITSP 186 Query: 189 EDRFFKE-EKKTVPNISLLKR 208 ++ +KT +++ R Sbjct: 187 PFSLMQKITQKTKADVAKFIR 207 >gi|319426278|gb|ADV54352.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200] Length = 212 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 9/201 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ET+GL + R IEIGAV + + T R F + P G + S GI+++ Sbjct: 14 VVLDFETSGLSPNQGARAIEIGAVLIENGVITQR-FSELMDP-GFRISTFIEDYTGISNQ 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ + + F DF + +AHNA FD F++AE I+ + +L Sbjct: 72 MLRNAAPCHEVMARFADFIGDN--HLVAHNAAFDQRFLDAEFAHIHHQY--QGQFACSLL 127 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +ARR +P + N + RY ++ + H AL D+ + +++ M+ Q +F + Sbjct: 128 LARRLYPLASNHQLATLVRYKQLPNNGTFHRALADAEMTGHLWLAMLADL-QRDFAITSP 186 Query: 189 EDRFFKE-EKKTVPNISLLKR 208 ++ +KT +++ R Sbjct: 187 PFSLMQKITQKTKADVAKFIR 207 >gi|68535798|ref|YP_250503.1| putative exonuclease [Corynebacterium jeikeium K411] gi|68263397|emb|CAI36885.1| putative exonuclease [Corynebacterium jeikeium K411] Length = 198 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 26/187 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D+ETTGL + +RIIEI A+ + + ++ + L PN E L GI+D Sbjct: 13 IVIDLETTGLRPQEERIIEIAALHIRNGELQDK-YTTLLNPN-LSVPQEITDLTGISDGL 70 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAE-------------WIAHNAKFDVGFINAELQRINK- 115 L DKP+FS + E +F + + HN FD F+ E+ R Sbjct: 71 LADKPTFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRTQLK 130 Query: 116 -----DPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + R++ T +R P R L ++ + HR H A+ D+ Sbjct: 131 NSAYANRPYTPRLVCTAEASRTLIPRESVGRYRLGNVASYLKVP--HRPLHRAMSDALAT 188 Query: 168 SDVYIKM 174 DV + Sbjct: 189 YDVLRAL 195 >gi|325208398|gb|ADZ03850.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis NZ-05/33] Length = 469 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 27 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 83 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R P+ + + Sbjct: 84 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 139 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 140 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 181 >gi|330444392|ref|YP_004377378.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58] gi|328807502|gb|AEB41675.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58] Length = 232 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 16/216 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DR+IEI A S T +F ++ P ++ K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRVIEIAAY----NSSTKESFVTYVNPEI-PVPEDSSKIHGITTAM 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+F + F F + +AHN FD+ + E QR + +PL+ R ID+L Sbjct: 60 VSSAPTFPEAYHNFKQFCGSA-SILVAHNNDNFDLPLLQKECQRYSLEPLNL-RTIDSLK 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 A++ P +++L L + YG + H AL D L V+ ++ + Sbjct: 118 WAKKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHKVFSALVGDLTPEQI-LAL 174 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 E+ F V + K + I L+ Sbjct: 175 LEESF----HPRVFKMPFGKYKGKTLSEIPASYLEW 206 >gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074] Length = 324 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 12/202 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ G +L + + + P P + +HG+T Sbjct: 19 YAVVDVETTGL-ARDDRIVSAGVYQLDALGRVEDHWYTLVNPER---DPGPVWIHGLTTG 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LKD P F I E ++ +AHNA FD + E R + R + T++ Sbjct: 75 VLKDAPLFKDISDELSARLADR--VLVAHNAAFDWSMLAREYARAERVAPVRQR-LCTIA 131 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + L SL +G+ H AL D+ +L++ + +V + Sbjct: 132 LSKELGLPLPNHKLESLAAHFGVV--QERAHHALDDARVLAEAFRPSLVAAAGGGVRLPL 189 Query: 188 NEDRFFKE--EKKTVPNISLLK 207 E R E E P I Sbjct: 190 LECRPLTEWSEPPATPRIGRQP 211 >gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] Length = 328 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 10/188 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ +L + + P P + +HG+T+E Sbjct: 26 YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDHWYTLVNPQR---DPGPVWIHGLTEE 81 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I E + ++ +AHNA FD + E R +K + + T++ Sbjct: 82 VLEGAPRFPEIAGELAERLADR--VLVAHNAAFDWSMLAREYAR-SKSAAPVRQRLCTIA 138 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + L +L YG+ R H AL D+ +L++ + + ++ Sbjct: 139 LSKELGLPLPNHKLETLAAHYGVV--QRRAHHALDDARVLAETFRPSLHRAAETGLRLPL 196 Query: 188 NEDRFFKE 195 + E Sbjct: 197 LACQPLTE 204 >gi|172059933|ref|YP_001807585.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6] gi|171992450|gb|ACB63369.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] Length = 375 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG + RI EIG VE+ T+ + P G+ P +L GI+D+ Sbjct: 16 VFVDLETTGGSTAEHRITEIGVVEI--GPLGVSTWTTLVNP-GQSIPPFIQQLTGISDDM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D PSF+S+ ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRDAPSFASLAPTLFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128 Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P R+ L++L +R+G+ + ++H AL D+ LL + ++ Sbjct: 129 SRALFPREARHGLDALIERHGLVPA--ARHRALADADLLWQFWRQL 172 >gi|261408383|ref|YP_003244624.1| hypothetical protein GYMC10_4596 [Paenibacillus sp. Y412MC10] gi|261284846|gb|ACX66817.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. Y412MC10] Length = 246 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 9/177 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEA 59 +++ +VFD+ETTG + + D I+ GA+ ++ N TF + + +G SP Sbjct: 54 TPLDELEVVVFDLETTGFNHQHGDEILSFGAIRVIGEQVIENETFHMIVN-SGAPVSPFI 112 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L GIT + + P +F F + +AH A D GF+NA L + +K L Sbjct: 113 AELTGITQQMVDAAPPLMEGLHDFMAFIGGR--VLVAHAAAHDRGFLNAALWKTSKVRL- 169 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R++DT+ +A+R +P + L+ L + GI + R H AL D+ + + ++ M Sbjct: 170 THRLLDTMMLAQRLYPEQKDYSLDELLRSSGIPVEGR--HHALSDARMTARLWADYM 224 >gi|326406526|gb|ADZ63597.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp. lactis CV56] Length = 277 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 4/167 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFD ETTG ++ + II+IGAV+ + ++ F + S E +L GI Sbjct: 4 KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYVSTEITQLTGIKP 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L ++P+ I EF DF + +AHNA FD+ F+ + ++ R+ DTL Sbjct: 64 ADLLNQPTIEEILPEFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ S L + + ++ H AL D + + +Y + Sbjct: 122 AESKKLLTMSSYALENFKDL--LEMNDLRSHDALNDCLITAKLYQYL 166 >gi|322689603|ref|YP_004209337.1| exonuclease [Bifidobacterium longum subsp. infantis 157F] gi|320460939|dbj|BAJ71559.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F] Length = 235 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 11/172 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EIGAV + + ++ FQ + P R + L GITD Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + F + A + HN FD+ F++ + I Sbjct: 92 MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 150 Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 DT+ I+R P+ R+ L L R+GI + +H AL D+ + M Sbjct: 151 YDTMQISRALFPAQRHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM 200 >gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae] gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae] Length = 1459 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 6/169 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIETTGL K IIE GAV++ K + Q F+ P K +L GIT + Sbjct: 425 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKVTQFFIKPQ-AKIGAFTTELTGITQQ 483 Query: 69 FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L + S +D + + A IAHNAKFD F+ + R+N P +IDTL Sbjct: 484 MLDSEGLSIKDGLQRIYDCLDGKVA--IAHNAKFDFNFLKEQF-RLNNVPFPNVTVIDTL 540 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R P+ R+ L + R G+ H D+ +L++V++ ++ Sbjct: 541 IASRIGFPNYKRHKLEDVASRLGVVYDPNVAHRGDYDAKVLANVWVNII 589 >gi|239998744|ref|ZP_04718668.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae 35/02] gi|240014337|ref|ZP_04721250.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI18] gi|240080968|ref|ZP_04725511.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA19] gi|240121900|ref|ZP_04734862.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID24-1] gi|240123269|ref|ZP_04736225.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID332] gi|268594593|ref|ZP_06128760.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268597081|ref|ZP_06131248.1| DNA polymerase III [Neisseria gonorrhoeae FA19] gi|268547982|gb|EEZ43400.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268550869|gb|EEZ45888.1| DNA polymerase III [Neisseria gonorrhoeae FA19] Length = 255 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 15/213 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + +AHN++FD F+ E R P+ + + Sbjct: 76 DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + ++RR +P ++ L+ + +R GI + R H A+ D L D + G Sbjct: 132 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCDYLEYSLSA-----HGL 184 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + + F+ + +L +R + + Sbjct: 185 EEWSRQCFRLTNPKLFPAALPERLRERLYGLPD 217 >gi|269214643|ref|ZP_05986966.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria lactamica ATCC 23970] gi|269209302|gb|EEZ75757.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria lactamica ATCC 23970] Length = 470 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + IAHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|15643262|ref|NP_228306.1| DNA polymerase III, epsilon subunit, putative [Thermotoga maritima MSB8] gi|4981007|gb|AAD35581.1|AE001726_15 DNA polymerase III, epsilon subunit, putative [Thermotoga maritima MSB8] Length = 189 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 9/181 (4%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59 + N V D ETTG D DRI+EI AV + N+ F + P R Sbjct: 4 MIWNDTVFCVVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIR-IPALI 62 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+HGI++ + + P +++ F D+ + + HNA FD+ F++ + P+ Sbjct: 63 QKVHGISNMDIVEAPDMDTVYDLFRDYV--KGTVLVFHNANFDLTFLDMMAKETGNFPI- 119 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDTL ++ + L L +R GI + R H AL D+ + + V++K++ Sbjct: 120 TNPYIDTLDLSEEIF-GRPHSLKWLSERLGIKTTIR--HRALPDALVTARVFVKLVEFLG 176 Query: 180 Q 180 + Sbjct: 177 E 177 >gi|325140605|gb|EGC63125.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385] Length = 469 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 27 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 83 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R P+ + + Sbjct: 84 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 139 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 140 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 181 >gi|323694146|ref|ZP_08108325.1| DNA polymerase III subunit epsilon [Clostridium symbiosum WAL-14673] gi|323501863|gb|EGB17746.1| DNA polymerase III subunit epsilon [Clostridium symbiosum WAL-14673] Length = 226 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 20/215 (9%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K + D+ETTGLD K+D+IIEIGAV ++D + TF F+ P R+ +L Sbjct: 20 EKEADSYVAIDLETTGLDPKHDKIIEIGAVLVIDG-EIKETFSTFVNP-RRELDGRIREL 77 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT E P + +F ++ + H+ FD F+ +NK + Sbjct: 78 TGITGEMTAGAPDIGDVIGRVVEFC--RDLPLLGHHIIFDYSFLKRAA--VNKGLVFEKS 133 Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 IDTL++ RR P + +L + + YGI H AL D+ L + + + Sbjct: 134 GIDTLTLCRRFMPEEEKKNLENASRYYGIK--QTDAHRALADA-LTAHLLYR-------- 182 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 K + E + P + +K+++P + Sbjct: 183 --NVKRSHFSSAPEAFRCKPLVYKVKKEQPASKKA 215 >gi|15677307|ref|NP_274462.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|7226692|gb|AAF41810.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|316984587|gb|EFV63552.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Neisseria meningitidis H44/76] gi|325199934|gb|ADY95389.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76] Length = 470 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|121607002|ref|YP_984331.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2] gi|120595971|gb|ABM39410.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2] Length = 203 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 9/164 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG+ DR E+ V LL+ + FQ + G + +L GIT+ Sbjct: 5 AVIDFETTGISPGCGDRATEVAIV-LLEGGRVVDRFQSLMN-AGVRIPSFITQLTGITNA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + + ++ F +A +AHNA FD F AEL R P I TL Sbjct: 63 MVAGAPDAAQVMTQASRFVG--DAPLVAHNAAFDRKFWQAELDRAGLAA--PQPFICTLL 118 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++RR +P + L SL +G+ + H AL D+ + ++ Sbjct: 119 LSRRLYPQAPNHKLGSLVDFHGLPRTG-QAHRALADAEMAVELL 161 >gi|329929369|ref|ZP_08283117.1| exonuclease, DNA polymerase III, epsilon subunit family [Paenibacillus sp. HGF5] gi|328936456|gb|EGG32901.1| exonuclease, DNA polymerase III, epsilon subunit family [Paenibacillus sp. HGF5] Length = 246 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 9/177 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEA 59 +++ +VFD+ETTG + + D I+ GA+ ++ N TF + + +G SP Sbjct: 54 TPLDELEVVVFDLETTGFNHQHGDEILSFGAIRVIGEQVIENETFHMIVN-SGAPVSPFI 112 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L GIT + + P +F F + +AH A D GF+NA L + +K L Sbjct: 113 AELTGITQQMVDAAPPLMEGLHDFMAFIGGR--VLVAHAAAHDRGFLNAALWKTSKVRL- 169 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R++DT+ +A+R +P + L+ L + GI + R H AL D+ + + ++ M Sbjct: 170 THRLLDTMMLAQRLYPEQKDYSLDELLRSSGIPVEGR--HHALSDARMTARLWADYM 224 >gi|261496609|ref|ZP_05992989.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307812|gb|EEY09135.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE] Length = 221 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53 + KN+ R +V D+ET GL+++ D ++E+ A+ + Y ++ + P G Sbjct: 20 LLKNRFRGYLPVVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGA 79 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 +PE+LK +GI D L+ + + E + Q A +AHNA FD F Sbjct: 80 NINPESLKFNGIDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAIIVAHNATFDQSF 139 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A ++RIN +DP P + DT ++A + + L C+ I H AL D Sbjct: 140 LQAAIKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQAAQINFDGHQAHSALYD 197 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ M+ + Sbjct: 198 TEKTTELFCAMVNKLKDLG 216 >gi|23464698|ref|NP_695301.1| exonuclease [Bifidobacterium longum NCC2705] gi|189438951|ref|YP_001954032.1| DNA polymerase III subunit alpha [Bifidobacterium longum DJO10A] gi|239620784|ref|ZP_04663815.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132392|ref|YP_003999731.1| polc [Bifidobacterium longum subsp. longum BBMN68] gi|23325262|gb|AAN23937.1| possible exonuclease [Bifidobacterium longum NCC2705] gi|189427386|gb|ACD97534.1| DNA polymerase III alpha subunit [Bifidobacterium longum DJO10A] gi|239516360|gb|EEQ56227.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772644|gb|ADQ02132.1| PolC [Bifidobacterium longum subsp. longum BBMN68] Length = 235 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 11/172 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EIGAV + + ++ FQ + P R + L GITD Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + F + A + HN FD+ F++ + I Sbjct: 92 MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 150 Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 DT+ I+R P+ R+ L L R+GI + +H AL D+ + M Sbjct: 151 YDTMQISRALFPAQRHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM 200 >gi|126435878|ref|YP_001071569.1| hypothetical protein Mjls_3300 [Mycobacterium sp. JLS] gi|126235678|gb|ABN99078.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS] Length = 630 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 20/214 (9%) Query: 2 IRKNKMRKIVFDIETTGLDSKN---DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 + +V D+ETTG + D I EIGAV++ + P GR P+ Sbjct: 23 LSLRDTTFVVVDLETTGGRATGERPDAITEIGAVKVRGGEVLGE-LATLVDP-GRAIPPQ 80 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + L GIT + P S+ F +F + + +AHNA FD+GF+ A ++ Sbjct: 81 IVSLTGITTAMVCAAPRIESVLPAFLEF--ARGSVLVAHNAGFDIGFLRAAAEQCGLTWP 138 Query: 119 DPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P ++ T+ +ARR L++L + + + H AL D+ DV ++ Sbjct: 139 RP-PVLCTVKLARRVLTRDEAPSVRLSALAQLFRAKTT--PTHRALDDARATVDVLHGLI 195 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 N G T + + + +P+++ +R Sbjct: 196 E--RIGNQGVHT-----YTDLRAYLPDVTPAQRR 222 >gi|320535302|ref|ZP_08035422.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Treponema phagedenis F0421] gi|320147834|gb|EFW39330.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Treponema phagedenis F0421] Length = 216 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 10/166 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 FD ETTGL + D ++EIG ++ D+ F + + P G+ + ++ ITD Sbjct: 15 FTAFDTETTGLKQEEDSVVEIGGIKF-DHRGVIARFNILINP-GKPMPEDVTAVNNITDA 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L DKP F+++ +F F + +AHNA FD+GFIN EL+R K PL +++IDTL Sbjct: 73 MLADKPPFNAVIPDFLRFIKK--TVLVAHNAPFDIGFINNELKRCKKPPL-TNKVIDTLV 129 Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +A+ P + L +L ++GI + H A DS + + + Sbjct: 130 LAQEVFPGLGKHQYRLQNLALQFGI--TALEAHRAEDDSRVCMEFF 173 >gi|226310490|ref|YP_002770384.1| hypothetical protein BBR47_09030 [Brevibacillus brevis NBRC 100599] gi|226093438|dbj|BAH41880.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 235 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 9/185 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 I + + +V D+ETTG D II +GAV + ++ +F + P GR P Sbjct: 46 IPLHDLEVVVVDLETTGFYPDHGDAIISMGAVAMRGEHLLLGDSFYTLVNP-GRAIPPHI 104 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L GITD+ + D P S F+ + ++ +AH+++ + F+ + L + ++ P Sbjct: 105 RSLTGITDDMVADAPPLLEALSRFFQYVGDR--PLVAHHSRHEREFLRSGLWKTSRRPF- 161 Query: 120 PSRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 R++DT+ + R +P L++LC + I IS R H A D+ ++ K +V Sbjct: 162 THRMLDTMLLIRLLNNPIGNGSLDALCAAHDIPISRR--HHAYCDALAAGTLWAKYLVKA 219 Query: 179 SQINF 183 F Sbjct: 220 QSQGF 224 >gi|225018549|ref|ZP_03707741.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum DSM 5476] gi|224948681|gb|EEG29890.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum DSM 5476] Length = 319 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 19/220 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG D D IIE+GA+ + + + +F P R ++L GI++E Sbjct: 22 YVVIDLETTGYDPHRDEIIELGALRIHEG-EVVESFSSLTKPQ-RDLDDYIIQLTGISNE 79 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P S +F + DF ++ + HN FDV FI + + L + ++D L Sbjct: 80 MLASAPELSDVFPRYLDFIG--DSIVVGHNVHFDVNFIYDTCIKESLK-LFTNDLVDLLW 136 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R+ P + + L + + I + H +L D + + K + + +G Sbjct: 137 LSRKLLPDLTSHKLCRVSSHFNICVEG--MHRSLFDCKTTFECFEKCRILAKE-RYGQVD 193 Query: 188 NEDRFFKEEKKT----------VPNISLLKRDKPLFTRIT 217 N + F+ K+T +P PLF ++ Sbjct: 194 NLSQVFRPIKRTPCPKLKACDILPECDEFDEAHPLFNKVC 233 >gi|325696784|gb|EGD38672.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK160] Length = 814 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S +II+IG V + + S T +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-GAKIIQIGIVLIENGSIT-KTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCDLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|237654602|ref|YP_002890916.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237625849|gb|ACR02539.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 502 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 DIETTG ++ + I EIG V++ + R + + P R +L GI D+ Sbjct: 13 AFVDIETTGGPAQRESITEIGIVQVDEDG--VREWSTLVRPASR-IPETIQRLTGIDDDM 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P F I E +D + + ++AHNA+FD G + A +R D +++ T+ + Sbjct: 70 VADAPRFEDIADEVFDRLDGR--LFVAHNARFDHGHLRAAFRRAGLD--MRPQVLCTVKL 125 Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +RR P R+ L+ L +R+G+ ++ R H AL D+ LL + K+ Sbjct: 126 SRRLFPDHRRHGLDHLIERHGLAVADR--HRALGDARLLWQFWQKI 169 >gi|325204438|gb|ADY99891.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240355] Length = 470 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|15672964|ref|NP_267138.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis Il1403] gi|12723925|gb|AAK05080.1|AE006332_9 DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis Il1403] Length = 277 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 4/167 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFD ETTG ++ + II+IGAV+ + ++ F + S E +L GI Sbjct: 4 KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYVSTEITQLTGIKP 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L ++P+ I EF DF + +AHNA FD+ F+ + ++ R+ DTL Sbjct: 64 ADLLNQPTIEEILPEFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ S L + + ++ H AL D + + +Y + Sbjct: 122 AESKKLLTMSSYALENFKDL--LEMNDLRSHDALNDCLITAKLYQYL 166 >gi|172057786|ref|YP_001814246.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Exiguobacterium sibiricum 255-15] gi|171990307|gb|ACB61229.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sibiricum 255-15] Length = 937 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + + +V D+ETTG K D +IEIG + D T R F+ P + P +L G Sbjct: 2 EKKFVVVDLETTGHSIKSGDEMIEIGVAVIEDGQITER-LSAFVRPQ-KPIPPFISQLTG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITDE + SF++I + ++AHN +FD+ F+N L+ P +I Sbjct: 60 ITDEDVAQAESFATIAPRVLQLLD--GGVFVAHNVQFDLTFLNEALEEEGYLP-YTGPVI 116 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 DT+ +AR P+ + L+ L + + ++H H A D+ ++ Sbjct: 117 DTVELARILLPTAESHSLSHLTEA--LQLTHHEAHRAGSDAEATAE 160 >gi|254493534|ref|ZP_05106705.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291] gi|268681897|ref|ZP_06148759.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332] gi|226512574|gb|EEH61919.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291] gi|268622181|gb|EEZ54581.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332] gi|317164039|gb|ADV07580.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae TCDC-NG08107] Length = 264 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 15/213 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + +AHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + ++RR +P ++ L+ + +R GI + R H A+ D L D + G Sbjct: 141 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCDYLEYSLSA-----HGL 193 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + + F+ + +L +R + + Sbjct: 194 EEWSRQCFRLTNPKLFPAALPERLRERLYGLPD 226 >gi|227546804|ref|ZP_03976853.1| DNA polymerase III, alpha subunit (gram-positive type) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|317481634|ref|ZP_07940669.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA] gi|322691564|ref|YP_004221134.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217] gi|227212766|gb|EEI80647.1| DNA polymerase III, alpha subunit (gram-positive type) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|316916924|gb|EFV38311.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA] gi|320456420|dbj|BAJ67042.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM 1217] Length = 235 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 11/172 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EIGAV + + ++ FQ + P R + L GITD Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + F + A + HN FD+ F++ + I Sbjct: 92 MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 150 Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 DT+ I+R P+ R+ L L R+GI + +H AL D+ + M Sbjct: 151 YDTMQISRALFPAQRHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM 200 >gi|116492693|ref|YP_804428.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745] gi|116102843|gb|ABJ67986.1| Rad3-related DNA helicase [Pediococcus pentosaceus ATCC 25745] Length = 929 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 9/182 (4%) Query: 4 KNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 NK + V D+E TG D D RII+IG ++ K TFQ + P R KL Sbjct: 1 MNKTKYAVVDLEMTGSDFDGDNRIIQIGC-AFVENGKIVDTFQSKVNPQ-RPIPAGITKL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GITDE +++ P F+ I E + + ++AHN +FD F+N EL R L+ Sbjct: 59 TGITDEQVQNAPKFNDIVDEVYR--KLVDTVFVAHNVEFDFPFLNQELVRSGYPELNI-P 115 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +DT+S+++ ++ L L I H H A D+ +++ I + Q+ Sbjct: 116 AVDTVSLSQIVFSFTKGYRLRDLTSYLKIE--HDDPHSADSDAIATANLLIAIKKNLQQL 173 Query: 182 NF 183 Sbjct: 174 PI 175 >gi|324990933|gb|EGC22868.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK353] Length = 814 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S +II+IG V L++ +T++ + P+ + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-GAKIIQIGIV-LIENGIITKTYETDVNPH-EDLDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|331091091|ref|ZP_08339933.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405313|gb|EGG84849.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium 2_1_46FAA] Length = 236 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 76/171 (44%), Gaps = 11/171 (6%) Query: 7 MR--KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 MR I FD+ETTGL + D IIEIGAV+ ++ K F FL P S L G Sbjct: 1 MRKTYISFDLETTGLSEEKDYIIEIGAVK-VNNGKVVDRFARFLKPPI-SISNTITNLTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD+ +K+ +F F + + HN FD F+ R I Sbjct: 59 ITDDMVKNAGDTQETIKDFIKFCD--GYFLLGHNIMFDYKFMKTYAARFGLHFEKEG--I 114 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 DTL IAR+ H + L SLC Y I + S H A D+ + +Y + Sbjct: 115 DTLKIARKVHKNLESKSLESLCTYYNIVNA--SAHRAYHDALATAKLYHML 163 >gi|163791070|ref|ZP_02185490.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Carnobacterium sp. AT7] gi|159873626|gb|EDP67710.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Carnobacterium sp. AT7] Length = 939 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 9/181 (4%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +K V DIETTG + + DR+I+ G V LL+ + F + P + L Sbjct: 3 HKDTYAVVDIETTGGNVASGDRMIQFGCV-LLEGDQVVHRFATNINP-LTSIPKQIEHLT 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 G++++ + P F I + ++ + IAHN +FD F++AELQR L ++ Sbjct: 61 GLSNKTVAQAPYFEDIAATIYNLLD--GCIIIAHNIQFDYTFLSAELQRCGMPAL-QNKG 117 Query: 124 IDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT+ +A+ P S LN L ++ I H + H A D+ + +++++ + ++ Sbjct: 118 IDTVELAQVLLPTESSYRLNDLVSKFNIE--HTNPHQADSDAAVTAELFLVLKQKLKELP 175 Query: 183 F 183 Sbjct: 176 L 176 >gi|319638605|ref|ZP_07993367.1| DNA polymerase III subunit [Neisseria mucosa C102] gi|317400354|gb|EFV81013.1| DNA polymerase III subunit [Neisseria mucosa C102] Length = 463 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + DRI E+ V T ++ + P R +L GI DE Sbjct: 22 VVVDLETTGGNFYQDRITEVALVRFEQGRAT--HYEQLVNP-CRSIPEFVARLTGIHDET 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ P F+ I ++ Q A +AHN++FD F+ E RI+ D PS + T+ + Sbjct: 79 VKNAPVFADIAADLLPLL--QGAVVVAHNSRFDYTFLRHEFARIHTDFAAPS--LCTVQL 134 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +RR +P ++ L+S+ +R GI ++R H A+ D L D Y+++ Sbjct: 135 SRRLYPEFYKHSLDSIIERTGIQTANR--HRAMTDVVALCD-YLEL 177 >gi|257876649|ref|ZP_05656302.1| DNA polymerase III [Enterococcus casseliflavus EC20] gi|257810815|gb|EEV39635.1| DNA polymerase III [Enterococcus casseliflavus EC20] Length = 918 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 8/174 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG DS DRII+ G V + D NR F + P+ R+ S + +L IT++ Sbjct: 5 YAVVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTHITNQ 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F I ++ + N ++AHN FD F++ E R PL IDT+ Sbjct: 63 QVSKAPYFEDIADTIYNLLS--NTIFVAHNIYFDYHFLSNEFVRCGLPPLSI-PGIDTVE 119 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +++ P S L L I H + H A D+ + + +++ + Q+ Sbjct: 120 LSQVFLPTESSFRLGDLAD--SIGFRHDNPHQADSDAEVTAALFLYIEAIMRQL 171 >gi|240016771|ref|ZP_04723311.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA6140] gi|240112673|ref|ZP_04727163.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae MS11] Length = 255 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 15/213 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + +AHN++FD F+ E R P+ + + Sbjct: 76 DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + ++RR +P ++ L+ + +R GI + R H A+ D L D + G Sbjct: 132 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCDYLEYSLSA-----HGL 184 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + + F+ + +L +R + + Sbjct: 185 EEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 217 >gi|89894618|ref|YP_518105.1| hypothetical protein DSY1872 [Desulfitobacterium hafniense Y51] gi|89334066|dbj|BAE83661.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 929 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 11/181 (6%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K + +V DIETTG D ND IIE A+ ++ + F V + P R+ L+L GI Sbjct: 3 KGKIVVIDIETTGFDIYNDEIIEFAAL-CIEEGEEAEAFSVLISP-RRQVPERILRLTGI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + E LK S + + D F Q+A + HN +FD+GF+ L ++ L D Sbjct: 61 SPEELKQAGSLHAYRDKILDLF--QDAIIVGHNVEFDLGFLEQALTIHFENTL-----WD 113 Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 TL IAR +P + L L K G+T H AL D+ ++ G ++ G Sbjct: 114 TLEIARILYPNMPKYKLGDLTKSLGLT-PLEKAHRALFDARAAWELLQACWEKGLTLDLG 172 Query: 185 F 185 F Sbjct: 173 F 173 >gi|194468010|ref|ZP_03073996.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri 100-23] gi|194452863|gb|EDX41761.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri 100-23] Length = 954 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 23/234 (9%) Query: 1 MIRKNKMR----------KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLC 49 M +++ R V D+ETTG + DRII+IG V + D N F+ + Sbjct: 1 MTQRSSQRTKKRDKKAPIYSVVDLETTGTNVNHGDRIIQIGCVLVQDGEIIN-HFETKIN 59 Query: 50 PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 P K ++L GI D+ ++ P F I + E ++AHN FD F+NAE Sbjct: 60 P-REKIPRSIVQLTGIEDKDVRKAPLFEDIAGTIYSLLAE--TTFVAHNVNFDFPFLNAE 116 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168 L+R L IDT+++++ P++++ L L I H H A+ D+ + Sbjct: 117 LERAGYPSLSI-PAIDTVTLSQILLPTAKSFRLRDLTSSLHIE--HDHPHSAVSDAEATA 173 Query: 169 DVYIKMMVGGSQIN---FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 ++ ++ Q+ T ++ V ++ LL+R K +++E Sbjct: 174 ELLTDLLKRIEQLPTLTLEKITQLKLNLPQQTAGVFDVELLRRRKS-PQPLSEE 226 >gi|313668201|ref|YP_004048485.1| DNA polymerase III subunit [Neisseria lactamica ST-640] gi|313005663|emb|CBN87106.1| putative DNA polymerase III subunit [Neisseria lactamica 020-06] Length = 470 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + D + E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDMVTEVALVKFEQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|281491483|ref|YP_003353463.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp. lactis KF147] gi|281375201|gb|ADA64714.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis KF147] Length = 277 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 4/167 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFD ETTG ++ + II+IGAV+ + ++ F + S E +L GI Sbjct: 4 KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYVSTEITQLTGIKP 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L ++P+ I EF DF + +AHNA FD+ F+ + ++ R+ DTL Sbjct: 64 ADLLNQPTIEEILPEFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ S L + + ++ H AL D + + +Y + Sbjct: 122 AESKKLLTMSSYALENFKDL--LEMNDLRSHDALNDCLITAKLYQYL 166 >gi|268686367|ref|ZP_06153229.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035] gi|268626651|gb|EEZ59051.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035] Length = 264 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + +AHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 141 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182 >gi|240127974|ref|ZP_04740635.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035] Length = 255 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + +AHN++FD F+ E R P+ + + Sbjct: 76 DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 132 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173 >gi|240117716|ref|ZP_04731778.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID1] Length = 255 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + +AHN++FD F+ E R P+ + + Sbjct: 76 DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 132 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173 >gi|325134568|gb|EGC57212.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399] gi|325144729|gb|EGC67024.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240013] gi|325205795|gb|ADZ01248.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M04-240196] Length = 470 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVAGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + +AHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGELFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|290580273|ref|YP_003484665.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025] gi|254997172|dbj|BAH87773.1| putative ATP-dependent DNA helicase [Streptococcus mutans NN2025] Length = 842 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 89/175 (50%), Gaps = 10/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K + V D+E TG + II++G V +++ + +T+ + P+ + S + Sbjct: 23 MTEKKTRKYAVVDLEATGAS-HSASIIQVGIV-IIENEQIIQTYTTDVNPH-KPLSKAII 79 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GITD L+ P FS + ++ + + + ++AHN KFD + L + L P Sbjct: 80 RLTGITDAQLQQAPDFSEVAADIYHLID--DCVFVAHNVKFDANLLAEHLFLEGFELLTP 137 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +L + I +S H A+ D+ +++++K+ Sbjct: 138 --RVDTVELAQVFYPTFEKYSLGNLTELLKIDLSD--AHTAIADAKATAELFLKL 188 >gi|332362812|gb|EGJ40606.1| DNA polymerase III [Streptococcus sanguinis SK355] Length = 814 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45] gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma bovis PG45] Length = 1458 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 6/169 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIETTGL K IIE GAV++ K +T Q F+ P K +L GIT + Sbjct: 424 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKTTQFFIKPKD-KIGSFTTELTGITQQ 482 Query: 69 FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L K + +D + + A IAHNAKFD F+ + R+N +IDTL Sbjct: 483 MLDSKGLYIKEGLEKIYDCLDGKIA--IAHNAKFDFNFLKEQF-RLNNMQFPRVTVIDTL 539 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R P R+ L + R G+ H D+ +L++V++ ++ Sbjct: 540 VASRIGFPGYKRHKLEDVASRLGVVYDPNVAHRGDYDAKVLANVWVNII 588 >gi|326407322|gb|ADZ64393.1| ATP-dependent DNA helicase DinG [Lactococcus lactis subsp. lactis CV56] Length = 794 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 KN R V D+E T S ++II+IG V L++ + TF + P+ P +L Sbjct: 1 MKNMTRYAVVDLEATDAHSSENKIIQIGIV-LVEDGEIVETFSTEVNPH-EPLLPRISEL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 G++D+ LK P FS + ++ + ++ ++AHNA+FD G + + + Sbjct: 59 TGLSDKQLKTAPEFSEVAAKVRELL--TDSVFVAHNARFDYGLLEKSFLNAGLE-FNEML 115 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +DT+ +AR +P+ + L SL ++ + ++H H A+ D++ +++ +K+ ++ Sbjct: 116 RVDTVDLARVFYPTFEKYGLESLSEK--LDLAHDHPHAAVSDAYATAELLLKIEAKIQKL 173 >gi|305433007|ref|ZP_07402163.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20] gi|304443708|gb|EFM36365.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20] Length = 253 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 13/184 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE+TG KN +I+EIGAV++ + + +R F + ++ +L GI + Sbjct: 72 FCIVDIESTGG-IKNGQILEIGAVKIKNLQEIDR-FSSLV--QVKEIPENITELTGINLD 127 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD PS + + ++F F +++ ++AHN +FD GFI+ L L +R I T+ Sbjct: 128 MVKDAPSLTKVLNDFRLFL--KDSIFVAHNVRFDYGFISKALNECGFGILL-NRRICTIE 184 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A+ S R L+ L + GI +H H AL D+ ++++ + ++ + KT Sbjct: 185 FAQCCIESPRYKLDVLKELLGIKNAH---HRALNDALAAAEIFKHCLG---KLPYHIKTT 238 Query: 189 EDRF 192 E+ Sbjct: 239 EELI 242 >gi|242309952|ref|ZP_04809107.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT 98-5489] gi|239523249|gb|EEQ63115.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT 98-5489] Length = 247 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 11/187 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + + + DIET G + + IEIGA+ + + FQ F+ + K+ I Sbjct: 68 EQKFCIVDIETNGHNPFLHQPIEIGAILYQNGM-VQKEFQSFV--FCEEIPEYITKITNI 124 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E L++ P + F F + ++AHN FD GF++ L L + + Sbjct: 125 TTEMLRNAPPIHQVLESFRIFLG--DCVFVAHNVGFDYGFLSNSLHHYGFGYL-YNPSLC 181 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +A++ + R L L I H H AL D+ + +V+ G +N Sbjct: 182 TIKLAQKTFQAPRYSLEFLNGFLNIN--HSPLHRALEDAKVALEVFK---TGLKNLNKNI 236 Query: 186 KTNEDRF 192 T+ED Sbjct: 237 YTSEDLI 243 >gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC 25259] gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans ATCC 25259] Length = 470 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 9/170 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 R D+ETTG ++ DR+ EI ++ T+ + P R +L GI Sbjct: 7 PQRLAFVDLETTGANAARDRVTEI--GVVVVDGDRVETWSTLVNPE-RAIPQFIQQLTGI 63 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++E + D P+F+ + E + + + +IAHNA+FD GF+ E QR+ + + ++ Sbjct: 64 SNEMVADAPTFARVADELAERLDGR--LFIAHNARFDYGFLKHEYQRLGRRF--RADVLC 119 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ ++RR P R++L+SL R+G+ +H AL D+ L+ + + Sbjct: 120 TVRLSRRLFPEHYRHNLDSLIARHGLATEG-DRHRALADADLIWQFWRTL 168 >gi|331266715|ref|YP_004326345.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5] gi|326683387|emb|CBZ01005.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5] Length = 830 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 10/186 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ R +V D+E T SK +II++G V + + ++ + + P+ Sbjct: 1 MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGDIIDQ-YATDVNPH-EPLDSHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD+ L P FS + + ++ ++ ++AHN +FD + L + P Sbjct: 58 ELTGLTDQRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P + +L LC+ GI + H H AL D+ +++ + M Sbjct: 116 --RVDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYMRQKLF 171 Query: 180 QINFGF 185 ++ G Sbjct: 172 ELPKGL 177 >gi|116334989|ref|YP_802484.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii PV] gi|116235270|dbj|BAF35118.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii PV] Length = 181 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 69/170 (40%), Positives = 99/170 (58%), Gaps = 7/170 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I D+ETTGL + DRIIEIG VE+++ T R F + P K + A +HGI Sbjct: 3 RIIFLDVETTGLFVEHGDRIIEIGCVEVINGHLTGRVFHSYFNPE-VKITQGAFNVHGIK 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSRI 123 D+FL KP F +EF F N N+ IAHNAKFD+ FIN E+ N + + I Sbjct: 62 DDFLLLKPMFYEKINEFIGFIN--NSTIIAHNAKFDINFINKEIYLTNFKIKKIQNYANI 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +D+L + R+ +P +N+LN LC ++ + + + HGAL D+ LL+ + IK Sbjct: 120 LDSLLLFRKLYPRKKNNLNDLCLKFNLIKNKKRIHGALNDAFLLAVLIIK 169 >gi|328945970|gb|EGG40117.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK1087] Length = 814 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|306825581|ref|ZP_07458920.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431942|gb|EFM34919.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 830 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 104/238 (43%), Gaps = 13/238 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ R +V D+E T SK +II++G V + + N+ + + P+ Sbjct: 1 MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIINQ-YATDVNPH-EPLDSHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD L P FS + + ++ ++ ++AHN +FD + L + P Sbjct: 58 ELTGLTDRRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P + +L LC+ GI + H H AL D+ +++ + M Sbjct: 116 --RVDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYMRQKLF 171 Query: 180 QINFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236 ++ G ++ + ++ I + + + L + EL H ++ K + Sbjct: 172 ELPKGLLESLLNLADNLLYESYLVIEEVYQQQSLLSSPDLMEL--HGLFLRKESKALV 227 >gi|194098334|ref|YP_002001392.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae NCCP11945] gi|268598740|ref|ZP_06132907.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11] gi|193933624|gb|ACF29448.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae NCCP11945] gi|268582871|gb|EEZ47547.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11] Length = 264 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 15/213 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + +AHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + ++RR +P ++ L+ + +R GI + R H A+ D L D + G Sbjct: 141 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCDYLEYSLSA-----HGL 193 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + + F+ + +L +R + + Sbjct: 194 EEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 226 >gi|269213464|ref|ZP_05982022.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria cinerea ATCC 14685] gi|269146173|gb|EEZ72591.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria cinerea ATCC 14685] Length = 470 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQ-KPIPQFVSGLTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + IAHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 141 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 182 >gi|224417820|ref|ZP_03655826.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|253827160|ref|ZP_04870045.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|313141361|ref|ZP_07803554.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|253510566|gb|EES89225.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] gi|313130392|gb|EFR48009.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT 98-5491] Length = 247 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 8/170 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + DIET G + + IEIGA+ K +F F+ + KL GIT Sbjct: 70 RFCIVDIETNGHNPFVHQPIEIGAIVYQ-GGKICESFHSFV--FCEEIPEYITKLTGITS 126 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L+ P + F F + + ++AHN FD F++ L L R + T+ Sbjct: 127 PMLEKAPKIHQVLESFKLFLS--DCVFVAHNVNFDYQFLSNALYHYGFGYLYNPR-LCTI 183 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +A++ S R L L + GI H H AL DS + S+V+ K ++G Sbjct: 184 KLAQKTFTSPRYSLEFLNEFLGIR--HSPLHRALEDSKVASEVFKKSLMG 231 >gi|323489901|ref|ZP_08095123.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2] gi|323396408|gb|EGA89232.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2] Length = 202 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 11/165 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL ND+II+IGAV+ +++ + T + + P R S ++ GIT++ Sbjct: 42 YVVLDFETTGLRPGNDKIIQIGAVKYVNHER-EETMYLMVNPQ-RSISNTITRITGITNK 99 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P I + F + IAHNA FD+GF+ A + P+ +IDT+ Sbjct: 100 DVENAPVIEDIAHDLITFIG--DLPIIAHNAPFDMGFLYALE---DITPIPEYTVIDTVK 154 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +AR+ + + L +L + H AL D + +Y Sbjct: 155 LARKAITQTPNHKLTTLTAFLKLE---HDAHDALGDCLATAAIYQ 196 >gi|83311148|ref|YP_421412.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] gi|82945989|dbj|BAE50853.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 216 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 30/218 (13%) Query: 1 MIRKNKM----RKIVFDIETTGLD-SKNDRI-------------IEIGAVE---LLDYSK 39 M+ + + R I D ETTG I IEIG VE D K Sbjct: 2 MLTLDDLSEVGRLIAIDAETTGFRVPTAAEIKKMPKGLRLPGVMIEIGCVELLRGEDGWK 61 Query: 40 TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 T ++ + P G + ++ +HGIT LKD P F + EF F + +AH+A Sbjct: 62 TGESWHRRIQPGG-PIAKASIAVHGITPAELKDAPQFRDVLDEFETFIGQDM--LLAHSA 118 Query: 100 KFDVGFINAELQRINKDPLD-----PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154 + ++ F+N E R+ + D + + T ++R+ P L+ LC R I S Sbjct: 119 ENEIEFLNFEYARVGRCGFDDVIFSDNDFVCTQELSRQFFPGVPGSLDVLCDRLWIDRSD 178 Query: 155 R-SKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191 R HGALLD+ L ++ ++KM G Q + + + D+ Sbjct: 179 RFEHHGALLDAILTAEAFMKMAGGFVQDDTRYMSFGDQ 216 >gi|219669053|ref|YP_002459488.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium hafniense DCB-2] gi|219539313|gb|ACL21052.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium hafniense DCB-2] Length = 929 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 60/186 (32%), Positives = 87/186 (46%), Gaps = 14/186 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI K + +V DIETTG D ND IIE A+ ++ + F V + P R+ L Sbjct: 1 MI---KGKIVVIDIETTGFDIYNDEIIEFAAL-CIEEGEEAEAFSVLISP-RRQVPERIL 55 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GI+ E LK S + + D F Q+A + HN +FD+GF+ L ++ L Sbjct: 56 RLTGISPEELKQAGSLQAYRDKILDLF--QDAIIVGHNVEFDLGFLEQALTIHFENTL-- 111 Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 DTL IAR +P + L L K G+T H AL D+ ++ G Sbjct: 112 ---WDTLEIARILYPNMPKYKLGDLTKSLGLT-PLEKAHRALFDARAAWELLQACWEKGL 167 Query: 180 QINFGF 185 ++ GF Sbjct: 168 TLDLGF 173 >gi|229822935|ref|ZP_04449005.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271] gi|229787748|gb|EEP23862.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271] Length = 828 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 95/196 (48%), Gaps = 12/196 (6%) Query: 2 IRKNKMRKIVFDIETTG--LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 ++ +R V D+ETTG LD + D+II+IGAV + D + + L P R Sbjct: 1 MKAKGIRIAVVDLETTGSHLD-QGDQIIQIGAVLIEDGQVLAQH-SMLLNPE-RNIPTHI 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + GI + ++D P+FS + +++ ++ ++AHN FD+ F+ A+ D Sbjct: 58 TAITGIQSDQVQDAPTFSQVAGLWYERL--KDCFFVAHNLGFDLTFLQAKFAEQGLDFQP 115 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 P+ +DT+ +A+ P + +L L + +G+ H AL D+ + + + + Sbjct: 116 PA--LDTVQLAKIFLPQAPGFNLQDLSQFFGLNFQD--AHDALGDARMTAHLLDVLAHQA 171 Query: 179 SQINFGFKTNEDRFFK 194 + +++G K FK Sbjct: 172 ADLDYGTKLALQPIFK 187 >gi|254360642|ref|ZP_04976791.1| exoribonuclease T [Mannheimia haemolytica PHL213] gi|153091182|gb|EDN73187.1| exoribonuclease T [Mannheimia haemolytica PHL213] Length = 215 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 21/207 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGR 53 + K++ R +V D+ET GL+++ D ++E+ A+ L + ++ + P G Sbjct: 12 LLKHRFRGYLPVVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGA 71 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 +PE+LK +GI D L+ + + E + Q A +AHNA FD GF Sbjct: 72 NINPESLKFNGIDIDNPLRGAVAENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQGF 131 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A ++RIN +DP P + DT ++A + + L C+ I + H AL D Sbjct: 132 LQAAIKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQVAKIPFDGKQAHSALYD 189 Query: 164 SHLLSDVYIKMMVGGSQINFGFKTNED 190 + ++++ M+ + GF D Sbjct: 190 TERTAELFCAMVNRLKDLG-GFPPLSD 215 >gi|309379715|emb|CBX21704.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 326 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ + + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPK-KPIPQFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I E + + IAHN++FD F+ E R P+ + + Sbjct: 76 DGMVVDAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R +P ++ L+S+ +R GI + R H A+ D L D Sbjct: 132 VQLSRCLYPQFYKHSLDSIIERLGIVVEDR--HRAMADVSALCD 173 >gi|240115419|ref|ZP_04729481.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID18] Length = 255 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPQFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + +AHN++FD F+ E R P+ + + Sbjct: 76 DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 132 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173 >gi|195952795|ref|YP_002121085.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1] gi|195932407|gb|ACG57107.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1] Length = 196 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 8/168 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTGL+ IIEI A L++ + + F + P G ++ GIT+ Sbjct: 12 YVVLDIETTGLNPDEHEIIEIFA-FLVEKERITKQFHRLINP-GFFIPRRITEITGITNA 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L +P I +F +F ++ + HN KFD+ F++ L+ S I TL Sbjct: 70 MLVGQPKVEGIIYDFDNFV--KDYIIVGHNVKFDLSFLSKAYSIYLHKKLN-SPNICTLE 126 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++++ P+ + L+++ + I H A D+ L +++ K+M Sbjct: 127 LSKKLIPNLKSYKLSAVADYFNIKYE--RLHRAKDDALLTYNIFNKLM 172 >gi|169334141|ref|ZP_02861334.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM 17244] gi|169258858|gb|EDS72824.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM 17244] Length = 204 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 7/166 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTGL+ + IIE+GAV++ D + F F+ P SPE KL GI + Sbjct: 24 YTVIDIETTGLNPDENEIIEVGAVKVRDRKIVDE-FSSFVSPKKDIISPEIRKLTGIDEA 82 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + F +F + + + HN FD+ F+ +R + D + +D L Sbjct: 83 MIEGADQIEDVIPRFNEFIDGE--ILLGHNVNFDINFLYDNYERYS-DFYLSNDYVDLLK 139 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I+R+ P + L ++ K+ GI + +H A+ D + K Sbjct: 140 ISRKLSPEFENHKLETVLKKLGIKVD--QQHRAVSDCIDAHHCFEK 183 >gi|329942403|ref|ZP_08291213.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|332287044|ref|YP_004421945.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|313847640|emb|CBY16628.1| putative DNA polymerase III epsilon chain [Chlamydophila psittaci RD1] gi|325507354|gb|ADZ18992.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|328815313|gb|EGF85301.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|328914277|gb|AEB55110.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC] Length = 249 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 5/166 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + D E TGLD K DRIIE A+ + + + + + P+ R S E+ Sbjct: 1 MTLLKDTVFVCLDCEMTGLDVKKDRIIEFAAIRFT-FDRVIDSMETLINPD-RVISAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++H I+D LKD+P + +F + F E + + H+ FD+ ++ E +RI + L Sbjct: 59 RIHHISDAMLKDQPRIAEVFPKIKSFLKEGD-YIVGHSVGFDLQVLSQEAERIGESFLSK 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 +IDTL +A+ S N L +L + + H A+ D + Sbjct: 118 YYVIDTLRLAKEYGDSPNNSLEALAVHFNVPYDGN--HRAMKDVEI 161 >gi|15673814|ref|NP_267989.1| DinG [Lactococcus lactis subsp. lactis Il1403] gi|12724861|gb|AAK05930.1|AE006413_6 ATP-dependent helicase DinG [Lactococcus lactis subsp. lactis Il1403] Length = 794 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 KN R V D+E T S ++II+IG V L++ + TF + P+ P +L Sbjct: 1 MKNMTRYAVVDLEATDAHSSENKIIQIGIV-LVEDGEIVETFSTEVNPH-EPLLPRISEL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 G++D+ LK P FS + ++ + ++ ++AHNA+FD G + + + Sbjct: 59 TGLSDKQLKTAPEFSEVAAKVRELL--TDSVFVAHNARFDYGLLEKSFLNAGLE-FNEML 115 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +DT+ +AR +P+ + L SL ++ + ++H H A+ D++ +++ +K+ ++ Sbjct: 116 RVDTVDLARVFYPTFEKYGLESLSEK--LDLAHDHPHAAVSDAYATAELLLKIEAKIQKL 173 >gi|268603417|ref|ZP_06137584.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1] gi|268587548|gb|EEZ52224.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1] Length = 264 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + +AHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 141 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182 >gi|57168588|ref|ZP_00367721.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli RM2228] gi|57020093|gb|EAL56770.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli RM2228] Length = 251 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 13/184 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE+TG KN +I+EIGAV++ + + +R F + ++ +L GI + Sbjct: 70 FCIVDIESTGG-IKNGQILEIGAVKIKNLQEIDR-FSSLV--QVKEIPENITELTGINLD 125 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD PS + + ++F F +++ ++AHN +FD GFI+ L L +R I T+ Sbjct: 126 MVKDAPSLTKVLNDFRLFL--KDSIFVAHNVRFDYGFISKALNECGFGILL-NRRICTIE 182 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 A+ S R L+ L + GI +H H AL D+ ++++ + ++ + KT Sbjct: 183 FAQCCIESPRYKLDVLKELLGIKNAH---HRALNDALAAAEIFKHCLG---KLPYHIKTT 236 Query: 189 EDRF 192 E+ Sbjct: 237 EELI 240 >gi|330984026|gb|EGH82129.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. lachrymans str. M301315] Length = 234 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 15/229 (6%) Query: 12 FDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 FD ETTGLD K D+++E VEL+D KT R ++ P R EA ++H ++ + L Sbjct: 2 FDTETTGLDPKTGDKMVEAAFVELIDRKKTGRFLHLYFDPK-RDVPDEAREVHNLSRDEL 60 Query: 71 ---KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD--PSRIID 125 F + DF + A +AHN+KFD GF + E Q L IID Sbjct: 61 VRLSGGRVFGHFAQQIIDFI--KGATLVAHNSKFDEGFFDMEFQHAGYGKLSDYCESIID 118 Query: 126 TLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 +L++A K P +N L++L + Y G R HGALLD+ LL+ VY+ M V ++ Sbjct: 119 SLAVASMKRPGRQNSLDALLREYVGTENYSREYHGALLDADLLAQVYLLMTVSQEGLSL- 177 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK 233 + R P + + + ++ H + + K Sbjct: 178 ----DTRLKATGPSLRPARLEVPEGALSVVSVNEAAMERHRSLSERIKK 222 >gi|239623211|ref|ZP_04666242.1| DNA polymerase III subunit epsilon [Clostridiales bacterium 1_7_47_FAA] gi|239522177|gb|EEQ62043.1| DNA polymerase III subunit epsilon [Clostridiales bacterium 1_7_47FAA] Length = 240 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 13/227 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ETTGL+ K ++I EI A++++D ++ + F+ P GR +L GITD Sbjct: 5 YIALDLETTGLEPKQEKITEIAALKVVDG-VISQRYVTFVNP-GRSLGAYITQLTGITDG 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P + + F + + HN +FD F+ +N+ IDTL+ Sbjct: 63 MLADAPPIEELIEDVVKFCG--DLPLLGHNIRFDYSFLKHAA--VNRRLEFEREGIDTLT 118 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + R R +L+ C + + + H A D+ +Y ++M Q Sbjct: 119 LCRAFMTGETRKNLSCACSYFHVP--QSTAHRAQADAEAAHLLYQELMSRHGQDQPSMFD 176 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + +K ++ KR K + K + I+ + ++ Sbjct: 177 PKPLIYKAKRDQAAT----KRQKEYLQDLLKCHRIDITVQIEDMSRS 219 >gi|323351851|ref|ZP_08087502.1| DNA polymerase III [Streptococcus sanguinis VMC66] gi|322121908|gb|EFX93640.1| DNA polymerase III [Streptococcus sanguinis VMC66] Length = 814 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S N +II+IG V L++ +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-NAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLNDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91] Length = 346 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAAEHRITEIGVVVVNANG--TSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|325571052|ref|ZP_08146624.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC 12755] gi|325156137|gb|EGC68323.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC 12755] Length = 918 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 8/174 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG DS DRII+ G V + D NR F + P+ R+ S + +L IT++ Sbjct: 5 YAVVDLETTGTDSTIDRIIQFGCVLVQDGKIINR-FAADINPD-RRISKQIQRLTHITNQ 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + ++ + N ++AHN FD F++ E R PL IDT+ Sbjct: 63 QVSKAPYFEDVADTIYNLLS--NTIFVAHNIYFDYHFLSNEFVRCGLPPLSL-PGIDTVE 119 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +A+ P S L L I H + H A D+ + + +++ + ++ Sbjct: 120 LAQVFLPTESSFRLGDLAD--SIGFRHDNPHQADSDAEVTAALFLYIEAIMREL 171 >gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] Length = 423 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + RI E+G VE+ T + + P + +L GIT+ Sbjct: 54 IVFVDLETTGGSTSEHRITEVGVVEVGPAGVT--RWSSLVDPQ-QPIPSFIQQLTGITNA 110 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+F +I E + N ++AHNA FD GF+ E +R ++ T+ Sbjct: 111 MVRGAPTFDAIAPELFARLN--GKLFVAHNASFDRGFLRGEFRRAGISFDPD--VLCTVR 166 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R PS R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 167 LSRALFPSEKRHGLDALVERHSLVPSDR--HRALADADLIWQFWQRL 211 >gi|317128618|ref|YP_004094900.1| DnaQ family exonuclease/DinG family helicase [Bacillus cellulosilyticus DSM 2522] gi|315473566|gb|ADU30169.1| DnaQ family exonuclease/DinG family helicase [Bacillus cellulosilyticus DSM 2522] Length = 922 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D+ETTG+ K DRII+I V +++ K F ++ P R P L I Sbjct: 3 RFVIVDVETTGVSFIKGDRIIQIAFV-VIEGKKIIDRFNSYVNP-MRDIPPFIRSLTNIN 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D +KD P+F + + A ++AHN FD+ FIN EL + L +IDT Sbjct: 61 DNEVKDAPTFDLVAPRLLQALD--GAFFVAHNVDFDLSFINEELHALGYTGLS-GPVIDT 117 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +++ +P++ L+ L + + ++H H A D+ + +++++M Sbjct: 118 VELSKIAYPTADGFRLSQLSE--SLHMNHDQPHRADSDAEATALIFLEIM 165 >gi|300775432|ref|ZP_07085294.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC 35910] gi|300506172|gb|EFK37308.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC 35910] Length = 407 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 10/227 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE+ G +N+ II+I D K F + P G +P KL IT + Sbjct: 2 YSIIDIESNGAGYRNECIIDIAIYRY-DGQKITDQFISLVNPEG-DITPFVQKLTSITPK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K P F I + QN + HN FD + +R+ D + +DT+ Sbjct: 60 MVKTAPKFHEIAKRVIEI--TQNTTLVGHNIDFDYRMLRQSFKRLGYDFKINT--LDTIP 115 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A++ P L L K GI +++ H A D+ +++ ++ ++ K Sbjct: 116 LAKKLIPDEVSYSLGKLVKSLGIPLTNH--HRAEGDARATLELFKLLISKDTENEIIQKQ 173 Query: 188 NEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGK 233 +E+ K + ++ L DK + +Q + K Sbjct: 174 HEESNAKTYINKIKELTQDLPNDKGFVYFQDEAGRIMFSDYVQDINK 220 >gi|225076263|ref|ZP_03719462.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens NRL30031/H210] gi|224952387|gb|EEG33596.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens NRL30031/H210] Length = 463 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + DRI E+ V T ++ + P R +L GI DE Sbjct: 22 VVVDLETTGGNFYQDRITEVALVRFEQGRAT--HYEQLVNP-CRSIPEFVARLTGIHDET 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ P F+ I ++ Q A +AHN++FD F+ E RI+ D PS + T+ + Sbjct: 79 VKNAPVFADIAADLLPLL--QGAVVVAHNSRFDYTFLRHEFARIHTDFAAPS--LCTVQL 134 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +RR +P ++ L+S+ +R GI ++R H A+ D L D Y+++ Sbjct: 135 SRRLYPEFYKHSLDSIIERTGIQTANR--HRAMTDVAALCD-YLEL 177 >gi|260440770|ref|ZP_05794586.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI2] Length = 255 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 15/213 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + +AHN++FD F+ E R P+ + + Sbjct: 76 DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + ++RR +P ++ L+ + +R GI + R H A+ D L D + G Sbjct: 132 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCDYLEYSLSA-----HGL 184 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + + F+ + +L +R + + Sbjct: 185 EEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 217 >gi|255656369|ref|ZP_05401778.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-23m63] gi|296450182|ref|ZP_06891943.1| epsilon subunit family exonuclease [Clostridium difficile NAP08] gi|296878563|ref|ZP_06902568.1| epsilon subunit family exonuclease [Clostridium difficile NAP07] gi|296260945|gb|EFH07779.1| epsilon subunit family exonuclease [Clostridium difficile NAP08] gi|296430370|gb|EFH16212.1| epsilon subunit family exonuclease [Clostridium difficile NAP07] Length = 168 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGLD I + + + + + + P G S +L I++E Sbjct: 4 YVVVDLETTGLDPYKGCEIIEIGITEIKNEQIVKNYSRLIKPKG-IISSFITELTHISNE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++ + F + ++ IAHNAKFD+ F+N L+ +N +P++ I T+ Sbjct: 63 MVENEEPLELVLPRFRKYIGDR--TIIAHNAKFDLKFLNYYLRMLNLEPINN--YICTVE 118 Query: 129 IARRK--HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++ + L + C Y I + H A D+ + +++K+ Sbjct: 119 LLKKCKSYKGKNKKLETACAYYNIENIN--AHRADSDTLATAKLFLKI 164 >gi|24379729|ref|NP_721684.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus mutans UA159] gi|24377689|gb|AAN58990.1|AE014965_11 putative ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit (3'-5' exonuclease) [Streptococcus mutans UA159] Length = 820 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 89/175 (50%), Gaps = 10/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K + V D+E TG + II++G V +++ + +T+ + P+ + S + Sbjct: 1 MTEKKTRKYAVVDLEATGAS-HSASIIQVGIV-IIENEQIIQTYTTDVNPH-KPLSKAII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GITD L+ P FS + ++ + + + ++AHN KFD + L + L P Sbjct: 58 RLTGITDAQLQQAPDFSEVAADIYHLID--DCVFVAHNVKFDANLLAEHLFLEGFELLTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +L + I +S H A+ D+ +++++K+ Sbjct: 116 --RVDTVELAQVFYPTFEKYSLGNLTELLKIDLSD--AHTAIADAKATAELFLKL 166 >gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2] gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2] Length = 1459 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 6/169 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIETTGL K IIE GAV++ K Q F+ P K +L GIT + Sbjct: 425 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGEVTQFFIKPQ-AKIGAFTTELTGITQQ 483 Query: 69 FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L + S +D + + A IAHNAKFD F+ + R+N P +IDTL Sbjct: 484 MLDSEGLSIKDGLQRIYDCLDGKVA--IAHNAKFDFNFLKEQF-RLNNVPFPNVTVIDTL 540 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R P+ R+ L + R G+ H D+ +L++V++ ++ Sbjct: 541 IASRIGFPNYKRHKLEDVTSRLGVVYDPNVAHRGDYDAKVLANVWVNII 589 >gi|297571338|ref|YP_003697112.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum DSM 20595] gi|296931685|gb|ADH92493.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum DSM 20595] Length = 200 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 79/166 (47%), Gaps = 8/166 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+ETTGLD DRIIEIG V L D + + F + P S A +H I+ Sbjct: 1 MTYAVVDVETTGLDLATDRIIEIGIVLLSDSLEQSGYFHSLIDPQR---SITAQHIHHIS 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRIID 125 + D PSF+ + + Q +AHNA FD+GF+NAE R +D + + Sbjct: 58 SAMVADAPSFALVAERVAKVLDGQ--IIVAHNAPFDLGFLNAEFARAQAGISIDRANAVC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 TL +R P + L L R GI H AL D+ ++++ Sbjct: 116 TLDQSRIYCPEGSHSLIGLAARLGIETP--VAHRALADALTCTELF 159 >gi|268601098|ref|ZP_06135265.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18] gi|268585229|gb|EEZ49905.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18] Length = 264 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPQFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + +AHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 141 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182 >gi|260663059|ref|ZP_05863952.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus fermentum 28-3-CHN] gi|260552680|gb|EEX25680.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus fermentum 28-3-CHN] Length = 946 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 10/216 (4%) Query: 9 KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K RII+IG V + D N F+ + P +L GI + Sbjct: 14 YAVVDLETTGTSVKTGSRIIQIGCVLVQDGQVINE-FETKINPRTV-VPLTIEQLTGIKN 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +KD P F + + + ++AHN FD F+NAE +R + PL IDT+ Sbjct: 72 NDVKDAPLFEDVAPTLKSLLD--DTIFVAHNVNFDFPFLNAEFERAGEAPLTI-PAIDTV 128 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FGF 185 ++++ P+ L L I H H A+ D+ + + I+++ + + Sbjct: 129 TLSQILMPTAPSFRLRDLTSYLAID--HDQPHSAVSDAVATAHLLIELLKRLADLPTITL 186 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 ++ D +KT + + + KEEL Sbjct: 187 QSIVDLQLTLPQKTAWLFERELAKRAVEPQPLKEEL 222 >gi|327459895|gb|EGF06235.1| DNA polymerase III [Streptococcus sanguinis SK1057] Length = 814 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|324993194|gb|EGC25114.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK405] gi|327461463|gb|EGF07794.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1] gi|327489318|gb|EGF21111.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1058] Length = 814 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S N +II+IG V L++ +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-NAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|125717716|ref|YP_001034849.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK36] gi|125497633|gb|ABN44299.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit, putative [Streptococcus sanguinis SK36] Length = 814 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EDLDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1] gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit family [Aromatoleum aromaticum EbN1] Length = 478 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 90/165 (54%), Gaps = 10/165 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 DIETTG + +D I EI +E+ + R + + P+ R ++ GI++ Sbjct: 19 AFVDIETTGTTASHDSITEIAIIEIGEDG--VREWSSLVRPDSR-IPDYIERMTGISNHM 75 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P+F+ + +D +E+ ++AHNA+FD GFI A +R+ D +++ T+ + Sbjct: 76 VADAPTFAELAETVFDRLHER--VFVAHNARFDHGFIRAAFRRLGVDFRP--KVLCTVRL 131 Query: 130 ARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +RR +P R++L++L R+G+ + ++H AL D+ L + + Sbjct: 132 SRRLYPQERRHNLDALIARHGLEVE--AQHRALGDAQALWQFWQR 174 >gi|184155667|ref|YP_001844007.1| helicase [Lactobacillus fermentum IFO 3956] gi|183227011|dbj|BAG27527.1| helicase [Lactobacillus fermentum IFO 3956] Length = 943 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 13/226 (5%) Query: 2 IRKNKMR---KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 + K K R V D+ETTG K RII+IG V + D N F+ + P Sbjct: 1 MAKKKRRGPVYAVVDLETTGTSVKTGSRIIQIGCVLVQDGQVINE-FETKINPRTV-VPL 58 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 +L GI + +KD P F + + + ++AHN FD F+NAE +R + P Sbjct: 59 TIEQLTGIKNNDVKDAPLFEDVAPTLKSLLD--DTIFVAHNVNFDFPFLNAEFERAGEAP 116 Query: 118 LDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 L IDT+++++ P+ L L I H H A+ D+ + + I+++ Sbjct: 117 LTI-PAIDTVTLSQILMPTAPSFRLRDLTSYLAID--HDQPHSAVSDAVATAHLLIELLK 173 Query: 177 GGSQIN-FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 + + ++ D +KT + + + KEEL Sbjct: 174 RLADLPTITLQSIVDLQLTLPQKTAWLFERELAKRAVEPQPLKEEL 219 >gi|332359593|gb|EGJ37411.1| DNA polymerase III [Streptococcus sanguinis SK49] Length = 814 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLNDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|328868531|gb|EGG16909.1| DNA polymerase III [Dictyostelium fasciculatum] Length = 782 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 5/170 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I FD+ETTG S+ D IIE+GAVEL+D +T TFQ + P PEA K+H + Sbjct: 401 RVICFDLETTGFGSE-DSIIEVGAVELIDGCRTGLTFQSYAKPK-APIHPEAAKVHNLNA 458 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P + + F DF +A +AHN FD + E+ R + T+ Sbjct: 459 YLLSSAPPIEFVLASFMDFVG--DALLVAHNLAFDHRMLIQEMMRSKIPINRSKKCFCTM 516 Query: 128 SIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMMV 176 R+ +L+++ + I + R HGAL+DS +L+ VY + Sbjct: 517 KYYRKVIKDVSYNLDAISSQLKIDKLLLRRTHGALVDSEILAIVYSHLTR 566 >gi|327473768|gb|EGF19186.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK408] Length = 814 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|239616933|ref|YP_002940255.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1] gi|239505764|gb|ACR79251.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1] Length = 180 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 9/171 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHG 64 M +V D ETTG K +IEI V + D+ +F + P R + G Sbjct: 1 MEFVVIDTETTGSSPHKGAELIEIAGVVVRDWEIIYEESFNELIKPK-RHVPISITMITG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + L+DK + F+DF ++ + NA FD+ F++ ++I L P+ + Sbjct: 60 INNLMLEDKLPIEIVLPRFYDFVRDR--VLVIQNAPFDLSFLDYFGKKIGIGEL-PNPFV 116 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+S++R R++L+ + R GI R H AL D+ + +IKM+ Sbjct: 117 DTISLSRSLF-RGRHNLDIILARLGIFCEDR--HRALGDAVATAKAFIKMV 164 >gi|327469619|gb|EGF15088.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK330] Length = 814 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|240125521|ref|ZP_04738407.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679] Length = 255 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 19 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + +AHN++FD F+ E R P+ + + Sbjct: 76 DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 131 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 132 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 173 >gi|297571327|ref|YP_003697101.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum DSM 20595] gi|296931674|gb|ADH92482.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum DSM 20595] Length = 597 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 13/212 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +V D+ETTG + EIGAV++ + F + P G + Sbjct: 40 LPLHDATFLVVDVETTGEKPGLHSLTEIGAVKVRGGTVIGE-FGSLVNP-GVPIPAFITR 97 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GIT + PS + F +F + ++AHNA FD+G + + Sbjct: 98 LTGITTGMVATAPSLGEVLVSFIEFVGGDPDLIFVAHNAPFDMGQLRGAASALGL-AFPN 156 Query: 121 SRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++IDT+ ++RR + L++L + TIS H AL D+ DV ++ Sbjct: 157 RKVIDTVKLSRRVFMKDEVPNHKLSTLARFVNATIS--PSHRALDDARATVDVLHAIL-- 212 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 G + G +D + VP +K Sbjct: 213 GRLGSLGVTHVDDLMVAHSR--VPGKRRMKAR 242 >gi|296454533|ref|YP_003661676.1| DNA polymerase III subunit epsilon [Bifidobacterium longum subsp. longum JDM301] gi|296183964|gb|ADH00846.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp. longum JDM301] Length = 235 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 11/172 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EIGAV + + ++ FQ + P R + L GITD Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + F + A + HN FD+ F++ + I Sbjct: 92 MVADLDPIDKVLPRFIAWLATPAAGPTVEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 150 Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 DT+ I+R P+ R+ L L R+GI + +H AL D+ + M Sbjct: 151 YDTMQISRALFPAQRHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM 200 >gi|291044082|ref|ZP_06569798.1| DNA polymerase III [Neisseria gonorrhoeae DGI2] gi|291012545|gb|EFE04534.1| DNA polymerase III [Neisseria gonorrhoeae DGI2] Length = 264 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 15/213 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + +AHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + ++RR +P ++ L+ + +R GI + R H A+ D L D + G Sbjct: 141 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCDYLEYSLSA-----HGL 193 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + + F+ + +L +R + + Sbjct: 194 EEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 226 >gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243] gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243] Length = 381 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAAEHRITEIGVVVVNANG--TSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|116618479|ref|YP_818850.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097326|gb|ABJ62477.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 797 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG K RII+IG + + + F+ F+ P G+ + +L I+ Sbjct: 7 FVVVDLETTGHSVKKGGRIIQIG-MTFIKKRQIVDHFESFVNP-GQLIDRQIQQLTHISQ 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +++ P F I + QN IAHN FD ++N E +R PL S IDT+ Sbjct: 65 KDVQNAPYFEEIAPLLQNLL--QNTVIIAHNVNFDYPYLNDEFERTGF-PLLKSAAIDTV 121 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +A+ P++ L L IT+ ++ H A D+H + +++K ++ Sbjct: 122 QLAQILFPTAPGYRLLDLTTYLNITL--KNAHRANADAHATALLFLKFWKKLEEL 174 >gi|325694226|gb|EGD36142.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK150] Length = 814 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLNDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|268684113|ref|ZP_06150975.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679] gi|268624397|gb|EEZ56797.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679] Length = 264 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+E+TG + DR+ E+ V+ ++ + P + +L GI+ Sbjct: 28 MPVAVVDLESTGGNLYEDRVTEVALVKFGQGR--AERYEWLVNPQ-KPIPKFVAELTGIS 84 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D + D P F+ I + + +AHN++FD F+ E R P+ + + Sbjct: 85 DGMVADAPVFAEIAGGLFSVL--KGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA--LCS 140 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++RR +P ++ L+ + +R GI + R H A+ D L D Sbjct: 141 VQLSRRLYPQFYKHSLDGIIERLGIVVEDR--HRAMADVSALCD 182 >gi|108805769|ref|YP_645706.1| hypothetical protein Rxyl_2984 [Rubrobacter xylanophilus DSM 9941] gi|108767012|gb|ABG05894.1| DNA polymerase III, epsilon subunit [Rubrobacter xylanophilus DSM 9941] Length = 560 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 11/159 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD+ETTG ++ I E+GA++L+ +R F + P GR P + Sbjct: 26 LDLREAPYVVFDLETTGSSAREGGITELGALKLVRGRVVDR-FSTLVNP-GRPIEPFVAR 83 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE + P + F +F + + +AHNA FD F+ A R + P+ Sbjct: 84 LTGITDEMVSGAPPAREVIPRFEEF--AEGSVLVAHNAGFDCSFLAA--ARGGRGL--PN 137 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159 ++DTL +AR P R L++L +G+ H Sbjct: 138 PVLDTLRLARLLVPGLRRYRLSALVSHFGVR--QAPNHR 174 >gi|163756168|ref|ZP_02163283.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] gi|161323780|gb|EDP95114.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] Length = 454 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 9/176 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI D + F + P R+ P + L GI Sbjct: 2 YAIVDIETTGGKYNEEGITEIAIYRF-DGHEVVDQFISLVNPE-REIQPFVVNLTGINSR 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D P F + + ++ +AHNA FD + E +R+ + + + T+ Sbjct: 60 MLRDAPKFYEVAKRIVEI--TEDCIIVAHNASFDYRILQLEFKRLGFEY--KRKSLCTVE 115 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 ++++ P L L + GI +S R H A D+ ++ ++ S+ N Sbjct: 116 LSKKLIPEMESYKLGKLVRALGIPMSDR--HRASGDALATVKLFQLLLDKDSEKNI 169 >gi|330718588|ref|ZP_08313188.1| Rad3-related DNA helicase [Leuconostoc fallax KCTC 3537] Length = 798 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M+ N +V D+ETTG + RII+IG + + K F+ F+ P G+ + Sbjct: 4 MMNAND-SFVVVDLETTGQSVDRGGRIIQIG-MTFIKKRKIVDHFETFVNP-GQLIDRQI 60 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L I+ ++ P F I +++ IAHN FD ++N E +R PLD Sbjct: 61 QQLTHISQNEVQHAPYFEEIAPVIHTLL--KDSVIIAHNVNFDYPYLNEEFERAGLSPLD 118 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +++ P++ L L + I +S+ H A D+H +++++ + Sbjct: 119 I-PAIDTVMLSQILLPTAPGYRLVDLTQYLDIKLSN--AHRANEDAHATAELFLSL 171 >gi|325689970|gb|EGD31974.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK115] Length = 814 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147] Length = 405 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + T+ + P P +L GITD+ Sbjct: 16 AFVDLETTGGSAVEHRITEIGVVVVSADH--VSTWTTLVNPRQA-IPPFIQQLTGITDDM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ + S ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADVASALFERLD--GKLFVAHNASFDRGFLRAEFERAGFAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L R+ +T S ++H AL D+ L+ + K+ Sbjct: 129 SRVLFPRESRHGLDALIARHALTPS--ARHRALADADLIWQFWQKL 172 >gi|261493343|ref|ZP_05989869.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310987|gb|EEY12164.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 221 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53 + KN+ R +V D+ET GL+++ D ++E+ A+ + Y ++ + P G Sbjct: 20 LLKNRFRGYLPVVIDVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGA 79 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 +PE+LK +GI D L+ + + E + Q A +AHNA FD GF Sbjct: 80 NINPESLKFNGIDIDNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQGF 139 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A ++RIN +DP P + DT ++A + + L C+ I+ H AL D Sbjct: 140 LQAAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQAAQISFDGHQAHCALYD 197 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ M+ + Sbjct: 198 TEKTTELFCAMVNKLKDLG 216 >gi|323485384|ref|ZP_08090732.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163] gi|323401247|gb|EGA93597.1| DNA polymerase III PolC-type [Clostridium symbiosum WAL-14163] Length = 263 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 10/172 (5%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K + D+ETTGLD K+D+IIEIGAV ++D + TF F+ P R+ +L Sbjct: 20 EKEADSYVAIDLETTGLDPKHDKIIEIGAVLVIDG-EIKETFSTFVNP-RRELDGRIREL 77 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT E P + +F ++ + H+ FD F+ +NK + Sbjct: 78 TGITGEMTAGAPDIGDVIGRVVEFC--RDLPLLGHHIIFDYSFLKRAA--VNKGLVFEKS 133 Query: 123 IIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 IDTL++ RR P + +L + + YGI H AL D+ L + + + Sbjct: 134 GIDTLTLCRRFMPEEEKKNLENASRYYGIK--QTDAHRALADA-LTAHLLYR 182 >gi|332638894|ref|ZP_08417757.1| helicase [Weissella cibaria KACC 11862] Length = 940 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 13/231 (5%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 N+ V D+ETT S+ RII+I AV + K F + P G + ++L Sbjct: 1 MLNRDIYAVVDLETTRTTSETGRIIQI-AVAFVQNKKIINQFSTLVNP-GEQIPRNIIQL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GIT +K P F + Q ++AHN FD+ F+NAE +R+ L S Sbjct: 59 TGITQNMVKGAPFFEDVAMTLHAML--QGTIFVAHNVNFDLPFLNAEFERVGLTAL-KST 115 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +DT+ +++ P++ L + +++ H H A D+ ++ I ++ Sbjct: 116 ALDTVPLSQILWPTAPGYRLVDMTN--CLSLEHNHPHQADSDALATGELLIAILKRAE-- 171 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT-RITKEELDEHDKTIQTL 231 G + + +P + +K L + + L H + I +L Sbjct: 172 --GLPMITLQALADLPLVLPRDTKTVFEKALAKNQAEPQPLPSHLQVIDSL 220 >gi|114321155|ref|YP_742838.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227549|gb|ABI57348.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] Length = 729 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 12/197 (6%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALK 61 + + +VFD ETTGL + D I+ I V +++ + F+ + P GR ++ Sbjct: 531 LDALNYVVFDTETTGLSPAEGDEIVSIAGVRMVNGRLLDGERFEQLVNP-GRTIPRSSIL 589 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HGI D + DKP ++ F F ++ +AHNA FD+ FI + +R +P Sbjct: 590 FHGIHDTTVADKPRIETVLPRFHTFVG--DSVLVAHNAAFDMKFIRLKERRCGVRFDNP- 646 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++DTL ++ H + + L ++ R G+ ++ ++H A D+ + + V+ ++ + Sbjct: 647 -VLDTLLLSVFLHDHTADHTLEAIAARLGVEVT--AQHTAWGDALVTARVFACLLPLLRE 703 Query: 181 INFGFKTNEDRFFKEEK 197 G T D E+ Sbjct: 704 R--GVHTLRDAVAASER 718 >gi|281492444|ref|YP_003354424.1| ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Lactococcus lactis subsp. lactis KF147] gi|281376108|gb|ADA65599.1| ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit [Lactococcus lactis subsp. lactis KF147] Length = 794 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 91/180 (50%), Gaps = 8/180 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 KN R V D+E T S ++II+IG V L++ + TF + P+ P +L Sbjct: 1 MKNMTRYAVVDLEATDAHSSENKIIQIGIV-LVEDGEIVETFSTEVNPH-EPLLPRISEL 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 G++D+ LK P FS + + + ++ ++AHNA+FD G + + + Sbjct: 59 TGLSDKQLKTAPEFSEVAGKVRELL--TDSVFVAHNARFDYGLLEKSFLNAGLE-FNEML 115 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +DT+ +AR +P+ + L SL ++ + ++H H A+ D++ +++ +K+ ++ Sbjct: 116 RVDTVDLARVFYPTFEKYGLESLSEK--LDLAHDHPHAAVSDAYATAELLLKIEAKIQKL 173 >gi|251796155|ref|YP_003010886.1| hypothetical protein Pjdr2_2143 [Paenibacillus sp. JDR-2] gi|247543781|gb|ACT00800.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. JDR-2] Length = 244 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 9/178 (5%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59 ++ +VFD+ETTG D II GAV + +R F + P R+ + Sbjct: 53 TPLKELDIVVFDLETTGFYPSNGDEIISFGAVHMKGLELDESRQFYSLVNPK-RRIPRQI 111 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 ++L GIT+E ++D P + +F +F + IAH A D F+NA L R +K L+ Sbjct: 112 IELTGITNEMVQDAPDLMQVLHDFMEFIGRR--LLIAHAAGHDKQFLNAALWRTSKVSLN 169 Query: 120 PSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 R++DT+ +A+ P + L+ L + GI I+ R H AL DS + + ++ + +V Sbjct: 170 -HRVLDTMLVAKWLEPKRASYALDDLLEDCGIPITER--HHALQDSLMTAKLWQQFLV 224 >gi|126734517|ref|ZP_01750263.1| exonuclease, putative [Roseobacter sp. CCS2] gi|126715072|gb|EBA11937.1| exonuclease, putative [Roseobacter sp. CCS2] Length = 461 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 87/162 (53%), Gaps = 11/162 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKL 62 + +VFD ETTGLD + D ++++GAV +++ + TF+ + P GR ++ K+ Sbjct: 268 LRDLTFVVFDSETTGLDPQKDDVVQLGAVRIVNGRIIASETFEALVNP-GRPIPAQSTKV 326 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI+D+ + P F+ + F + NA +AHNA FD+ F+N D + + Sbjct: 327 HGISDDMVAGAPDFTVVRDNFQRY--AANAVLVAHNAPFDMAFLNRS------DAIFQNP 378 Query: 123 IIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLD 163 ++DT+ ++ S + L++LC R ++I +H AL D Sbjct: 379 VMDTVHLSAIVFGGSAEHTLDALCARLEVSIPEDLRHTALGD 420 >gi|116511811|ref|YP_809027.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris SK11] gi|116107465|gb|ABJ72605.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactococcus lactis subsp. cremoris SK11] Length = 277 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 4/167 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFD ETTG ++ + II+IGAV+ + ++ F + S E +L GI Sbjct: 4 KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQLVKNQRSYVSTEITQLTGIKP 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L ++P+ I +F DF + +AHNA FD+ F+ + ++ R+ DTL Sbjct: 64 ADLLNQPTIEEILPDFLDFI--KGHLLVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ S L + + ++ H AL D + + +Y + Sbjct: 122 AESKKLLTMSSYALENFKDL--LEMNDLRSHDALNDCLITAKLYQYL 166 >gi|148544145|ref|YP_001271515.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri DSM 20016] gi|184153518|ref|YP_001841859.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112] gi|227364574|ref|ZP_03848635.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri MM2-3] gi|325682311|ref|ZP_08161828.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A] gi|148531179|gb|ABQ83178.1| DnaQ family exonuclease/DinG family helicase, putative [Lactobacillus reuteri DSM 20016] gi|183224862|dbj|BAG25379.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112] gi|227070411|gb|EEI08773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri MM2-3] gi|324978150|gb|EGC15100.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A] Length = 954 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 21/233 (9%) Query: 1 MIRKNKMR----------KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLC 49 M +++ R V D+ETTG + DRII+IG V + D N F+ + Sbjct: 1 MTQRSSQRTKKRDKKAPIYSVVDLETTGTNVNHGDRIIQIGCVLVQDGEIIN-HFETKIN 59 Query: 50 PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 P K ++L GI D+ ++ P F I + E ++AHN FD F+NAE Sbjct: 60 P-REKIPRSIVQLTGIEDKDVRKAPLFEDIAGTIYSLLAE--TTFVAHNVNFDFPFLNAE 116 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168 L+R L IDT+++++ P++++ L L I H H A+ D+ + Sbjct: 117 LERAGYPSLSI-PAIDTVTLSQILLPTAKSFRLRDLTSSLHIE--HDHPHSAVSDAEATA 173 Query: 169 DVYIKMMVGGSQIN-FGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKE 219 D+ ++ ++ + ++T + L+R + +++E Sbjct: 174 DLLNDLLKRVQELPTLTLEKITQLKLNLPQQTAGVFDAELQRRRKSPQPLSEE 226 >gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1] gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1] Length = 1457 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 11/188 (5%) Query: 2 IRKNKM----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +R+N+ R +VFD+ETTGL K + +IE GAV + + + + P K Sbjct: 393 LRQNQDLEHARYVVFDLETTGLSPKFNELIEFGAVVWQNGQILEKH-EFLIKPK-EKIPS 450 Query: 58 EALKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 L GIT++ ++ + S + F QN+ +AHNA+FD G + + + Sbjct: 451 YISDLTGITNQMIENEAISVEEAAIKIKQIF--QNSILVAHNARFDYGCLVEFFKELELY 508 Query: 117 PLDPSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L+ +IDTL ++R P R++L L K I H D+ +L+ V+ + + Sbjct: 509 ELE-QPVIDTLEVSRFLAPTQKRHNLKELAKNASIHYDETESHRGGYDAEVLAKVWDQFL 567 Query: 176 VGGSQINF 183 + + N Sbjct: 568 IKLIEKNI 575 >gi|167570838|ref|ZP_02363712.1| possible DNA polymerase/helicase [Burkholderia oklahomensis C6786] Length = 408 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + T+ + P P +L GITD+ Sbjct: 16 AFVDLETTGGSAVEHRITEIGVVVVSADH--VSTWTTLVNPRQA-IPPFIQQLTGITDDM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ + S ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADVASALFERLD--GKLFVAHNASFDRGFLRAEFERAGFAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L R+ +T S ++H AL D+ L+ + K+ Sbjct: 129 SRVLFPRESRHGLDALIARHALTPS--ARHRALADADLIWQFWQKL 172 >gi|326773509|ref|ZP_08232792.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] gi|326636739|gb|EGE37642.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505] Length = 465 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 12/218 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +V D+ETTG + EIGAV++ + F + P G + Sbjct: 15 TPLERATFVVVDLETTGGAPGARSVTEIGAVKVR-GGQVLAEFSTLVNP-GVAIPAQITM 72 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L GIT+ + P + F D+ + +AHNA+FDVG + + + + Sbjct: 73 LTGITNAMVAGAPGVRTCVEAFLDWADLLADDVILVAHNARFDVGHLRGAAAAVGLEWPE 132 Query: 120 PSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 P R++DTL++ARR + L +L G R H AL D+ DV + Sbjct: 133 P-RVLDTLALARRAWTRSEVPNHKLGTLAAFVG--SQTRPTHRALDDARATVDVLHAALE 189 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214 + + G ED + + + L + Sbjct: 190 VMAPL--GVTHLEDLSTASDPVPARRRAKSRLADALPS 225 >gi|312869960|ref|ZP_07730099.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris PB013-T2-3] gi|311094545|gb|EFQ52850.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris PB013-T2-3] Length = 949 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 19/187 (10%) Query: 1 MIRKNKMR----------KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLC 49 M +KNK R V D+ETTG DRII+IG V + D N F+ + Sbjct: 1 MQKKNKRRTPKRDRTAPIYSVVDLETTGTSVNHGDRIIQIGCVLVQDGQVIN-HFETKVN 59 Query: 50 PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 P K ++L GI D ++ P F + + ++AHN FD F+NAE Sbjct: 60 P-REKIPRAVVQLTGIQDRDVRKAPLFEDVAGTIYSLL--TGTTFVAHNVNFDFPFLNAE 116 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168 L+R PL P + IDT+++++ P++++ L L I H H A+ D+ + Sbjct: 117 LERAGYPPL-PIKAIDTVTLSQILLPTAKSFRLRDLTSSLQIE--HDHPHSAVSDAEATA 173 Query: 169 DVYIKMM 175 + + ++ Sbjct: 174 SLLVDLL 180 >gi|332366322|gb|EGJ44074.1| DNA polymerase III [Streptococcus sanguinis SK1059] Length = 267 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCNLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|320457724|dbj|BAJ68345.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 235 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 84/213 (39%), Gaps = 17/213 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EIGAV + ++ FQ + P R + L GITD Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVRKGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 91 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + F + A + HN FD+ F++ + I Sbjct: 92 MVADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 150 Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 DT+ I+R P+ R+ L L R+GI + +H AL D+ + M + Sbjct: 151 YDTMQISRALFPAQRHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM------RH 202 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 + + +E + ++ N + + + + R Sbjct: 203 YVTEHHESEAIRWKQAPARNSTEILHQQLVVKR 235 >gi|325687825|gb|EGD29845.1| DNA polymerase III [Streptococcus sanguinis SK72] Length = 814 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG V L++ +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIGIV-LIENGIITKTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCGLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|194015490|ref|ZP_03054106.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061] gi|194012894|gb|EDW22460.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061] Length = 240 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 17/176 (9%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNSPEA 59 +V D+ETTGLD K D+IIEIGA+++ + F + GR Sbjct: 3 PQTYVVLDLETTGLDHKKDQIIEIGAIKIRLGGRVREFEEVSRFHTMVALEEGRDLPEFI 62 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L GIT+E L+D P E +F +A +A NA FD+ FI+ + ++ Sbjct: 63 TNLTGITEEDLEDAPEEWDALDELQNFIG--DAIVVAQNAPFDLSFIS-------RGDIE 113 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P R T ++AR P L + KR GI++ H AL D +V+ + + Sbjct: 114 PERFYCTRAMARFVEPELSASLKDVTKRIGISLDGH--HRALNDVEATIEVFRRYL 167 >gi|227529135|ref|ZP_03959184.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus vaginalis ATCC 49540] gi|227350979|gb|EEJ41270.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus vaginalis ATCC 49540] Length = 960 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 13/212 (6%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG DRII++G V + D N F+ + P +L GI + Sbjct: 25 YSVVDLETTGTSVNHGDRIIQVGCVLVQDGEIIN-HFETKINPRVA-VPRHITQLTGIKN 82 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +++ P F I + + ++AHN FD F+NAEL+R L + IDT+ Sbjct: 83 NDVRNAPLFEDIAGTLYSLLS--GTIFVAHNVNFDFPFLNAELERAGYPSLSI-KAIDTV 139 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++++ P+ L L I H H A+ D+ + + + +M ++ Sbjct: 140 TLSQILMPTVKSYRLRDLTSSLSIE--HDHPHSAVSDAEATAHLLVDLMKQLREL----P 193 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 T E K +P + + ++ L R+ Sbjct: 194 TLTLEKLVELKLNLPQQTTMVLEQELERRVAN 225 >gi|329942731|ref|ZP_08291510.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|332287328|ref|YP_004422229.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|313847912|emb|CBY16907.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci RD1] gi|325506611|gb|ADZ18249.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC] gi|328814991|gb|EGF84980.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Chlamydophila psittaci Cal10] gi|328914571|gb|AEB55404.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC] Length = 228 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 78/169 (46%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRIIEI A KT +F ++ P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIIEIAAYNH----KTKESFVTYVNPEI-PIPEEASKIHGITTST 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + F DF + A +AHN FD + E +R PL + ID+L Sbjct: 60 VISAPKFPEAYKHFCDFCGNE-AVLVAHNNDSFDFPLLEKECRRHALPPLSL-KTIDSLK 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 A++ P +++L L + YG + H AL D L +V+ ++ Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHNVFSALIG 164 >gi|330815857|ref|YP_004359562.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia gladioli BSR3] gi|327368250|gb|AEA59606.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia gladioli BSR3] Length = 388 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 88/166 (53%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + + RI EIG VE+ + T+ + P + +L GI+DE Sbjct: 16 AFVDLETTGGSAADHRITEIGVVEV--GPQGVSTWTSLIDPQ-QPIPAFIQQLTGISDEM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+FSSI +E F + +IAHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFSSIAAEL--FARLEGRLFIAHNASFDRGFLRAEFERAGFAFNPD--MLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + + ++H AL D+ L+ + ++ Sbjct: 129 SRALFPRESRHGLDALIERHALVPN--ARHRALADADLVWQFWQRL 172 >gi|56477410|ref|YP_158999.1| nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) [Aromatoleum aromaticum EbN1] gi|56313453|emb|CAI08098.1| Nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) [Aromatoleum aromaticum EbN1] Length = 469 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 91/169 (53%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 ++ D+ETTG + +DR+ EI AV ++ + ++ + P R +L GITDE Sbjct: 8 VLIDVETTGANPVSDRVTEI-AVLRIERGEIVGRWESLVNPE-RPIPALIQRLVGITDEM 65 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+F+ + + A ++AHNA+FD GFI E R+ + + ++ T+ + Sbjct: 66 VAGAPTFAELADSVRGHLD--GAVFVAHNARFDYGFIRNEFSRLGQQF--EASVLCTVKL 121 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +R +P R+ L++L +R+G T ++H A+ D+ +L + +++ G Sbjct: 122 SRALYPEHHRHGLDALIERHGFTC--GARHRAMGDTDVLWQ-FARLVSG 167 >gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001] gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001] Length = 386 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + RI E+G VE+ T + + P + +L GIT+ Sbjct: 15 IVFVDLETTGGSTNEHRITEVGVVEVGPTGVT--RWSSLVDPQ-QPIPSFIQQLTGITNA 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+F +I E F ++AHNA FD GF+ E +R+ ++ T+ Sbjct: 72 MVRGAPTFEAIAPEL--FARLDGKLFVAHNASFDRGFLRGEFRRVGISFDPD--VLCTVR 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R PS R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 128 LSRALFPSEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172 >gi|281355248|ref|ZP_06241742.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC BAA-548] gi|281318128|gb|EFB02148.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC BAA-548] Length = 185 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 7/173 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI +FD+ETTG+ DRI+E+ AV +D + FQ + P G + +A+ Sbjct: 1 MIWCELGPFTIFDVETTGMSPVRDRIVELAAVR-VDRDGSLSRFQSLVNP-GVRIPAQAV 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +H ITD+ + PSF+ + +F +F +E + +AHNA+FD+GF+ L R PL Sbjct: 59 AVHHITDDMVAGAPSFARMGLDFLEFASE--STLVAHNARFDLGFLQESLARTGL-PLWK 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHR-SKHGALLDSHLLSDVY 171 + +D+L + + P+ +L SL + + + H A D V Sbjct: 116 GKTLDSLRLLKTTFPNLPSYNLQSLRAYFQLETEKGMNAHRAGADVEWTRQVL 168 >gi|306829204|ref|ZP_07462394.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis ATCC 6249] gi|304428290|gb|EFM31380.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis ATCC 6249] Length = 830 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 100/235 (42%), Gaps = 19/235 (8%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ R +V D+E T SK +II++G V + + ++ + + P+ Sbjct: 1 MMNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIVDQ-YATDVNPH-EPLDSHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+TD+ L P FS + + ++ ++ ++AHN +FD + L + P Sbjct: 58 ELTGLTDQRLAAAPEFSQVAGKIFELV--KDGVFVAHNVQFDANLLAEFLFFEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P + +L LC+ GI + H AL D+ +++ + M Sbjct: 116 --RVDTVELAQVLYPQFEKYNLGILCQELGIELE--QAHTALSDAQATAELLLYMRQKLF 171 Query: 180 QINFGFKTN----EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 ++ G + D E + + + F + E ++ H ++ Sbjct: 172 ELPKGLLESLLDLADNLLYESYLVIEEVYQQQ-----FLLSSSELIELHGLFLRK 221 >gi|293568616|ref|ZP_06679931.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1071] gi|291588576|gb|EFF20409.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1071] Length = 929 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L IDT+ Sbjct: 64 RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +A+ P L L + G H + H A D+ + + + + ++ Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLIEERMRKLPI 174 >gi|257886903|ref|ZP_05666556.1| DNA polymerase III [Enterococcus faecium 1,141,733] gi|257822957|gb|EEV49889.1| DNA polymerase III [Enterococcus faecium 1,141,733] Length = 929 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L IDT+ Sbjct: 64 RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +A+ P L L + G H + H A D+ + + + + ++ Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLIEERMRKLPI 174 >gi|227551932|ref|ZP_03981981.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecium TX1330] gi|257895474|ref|ZP_05675127.1| DNA polymerase III [Enterococcus faecium Com12] gi|293378340|ref|ZP_06624509.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecium PC4.1] gi|227178933|gb|EEI59905.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus faecium TX1330] gi|257832039|gb|EEV58460.1| DNA polymerase III [Enterococcus faecium Com12] gi|292643204|gb|EFF61345.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus faecium PC4.1] Length = 929 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L IDT+ Sbjct: 64 RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +A+ P L L + G H + H A D+ + + + + ++ Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLIEERMRKLPI 174 >gi|29839853|ref|NP_828959.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC] gi|29834200|gb|AAP04837.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC] Length = 249 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 5/174 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + D E TGLD K DRIIE A+ + K + + + P+ R S E+ Sbjct: 1 MTLLKDTIFVCLDCEMTGLDVKKDRIIEFAAMRFT-FDKVIDSMETLINPD-RVISAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++H I+D LKD+P + +F + F E + + H+ FD+ + E +RI + L Sbjct: 59 RIHRISDAMLKDQPRIAEVFPKIKSFLKEGD-YIVGHSVGFDLQVLTQEAERIGESFLSK 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IIDTL +A+ S N L +L + + H A+ D + +++ Sbjct: 118 YYIIDTLRLAKEYGDSPNNSLEALAVHFNVPYDGN--HRAMKDVEININIFKHF 169 >gi|295677334|ref|YP_003605858.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] Length = 382 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + RI E+G VE+ + + P + +L GIT++ Sbjct: 15 IVFVDLETTGGSTSEHRITEVGVVEV--GPAGVSRWSSLVDPQ-QPIPSFIQQLTGITND 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+F SI ++ N ++AHNA FD GF+ +E +R ++ T+ Sbjct: 72 MVRGAPTFESIAPALFERLN--GKLFVAHNASFDRGFLRSEFRRAGIAFDPD--VLCTVR 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 128 LSRALFPGEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172 >gi|293571662|ref|ZP_06682683.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E980] gi|291608332|gb|EFF37633.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E980] Length = 929 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L IDT+ Sbjct: 64 RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +A+ P L L + G H + H A D+ + + + + ++ Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLIEERMRKLPI 174 >gi|227514853|ref|ZP_03944902.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum ATCC 14931] gi|227086785|gb|EEI22097.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus fermentum ATCC 14931] Length = 946 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 10/216 (4%) Query: 9 KIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K RII+IG V + D N F+ + P +L GI + Sbjct: 14 YAVVDLETTGTSVKTGSRIIQIGCVLVQDGQVINE-FETKINPRTV-VPLTIEQLTGIKN 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 +K P F + + + ++AHN FD F+NAE +R + PL IDT+ Sbjct: 72 NDVKGAPLFEDVAPTLKSLLD--DTIFVAHNVNFDFPFLNAEFERAGEAPLTI-PAIDTV 128 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FGF 185 ++++ P+ L L I H H A+ D+ + + I+++ + + Sbjct: 129 TLSQILMPTAPSFRLRDLTSYLAID--HDQPHSAVSDAVATAHLLIELLKRLADLPTITL 186 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 ++ D +KT + + + KEEL Sbjct: 187 QSIVDLQLTLPQKTAWLFERELAKRAVEPQPLKEEL 222 >gi|257898090|ref|ZP_05677743.1| DNA polymerase III [Enterococcus faecium Com15] gi|257836002|gb|EEV61076.1| DNA polymerase III [Enterococcus faecium Com15] Length = 929 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L IDT+ Sbjct: 64 RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +A+ P L L + G H + H A D+ + + + + ++ Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLIEERMRKLPI 174 >gi|62184729|ref|YP_219514.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3] gi|62147796|emb|CAH63542.1| putative DNA polymerase III epsilon chain [Chlamydophila abortus S26/3] Length = 249 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 5/166 (3%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + D E TGLD K DRIIE A+ + + + + P+ R S E+ Sbjct: 1 MTLLKDTVFVCLDCEMTGLDVKKDRIIEFAAIRFT-FDSVIDSMETLINPD-RVISAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++H I+D LKD+P + +F + F E + + H+ FD+ ++ E +RI + L Sbjct: 59 RIHHISDAMLKDQPRIAEVFPKIKSFLKEGD-YIVGHSVGFDLQVLSQEAERIGETFLSK 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 IIDTL +A+ S N L +L + + H A+ D + Sbjct: 118 YYIIDTLRLAKEYGDSPNNSLEALAVHFNVPYDGN--HRAMKDVEI 161 >gi|87120665|ref|ZP_01076558.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121] gi|86163893|gb|EAQ65165.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121] Length = 203 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 12/174 (6%) Query: 7 MR---KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 MR ++ D ETTGL + DR IEIGAV+ L+ + FQ + P G + Sbjct: 1 MRADSLVILDFETTGLSPDQGDRAIEIGAVK-LEAGEVVAEFQALMNP-GFSVTSFIEGY 58 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI++ L S + F +F + N IAHNA FD F++AE R N + Sbjct: 59 TGISNAMLAQADSCREVMESFAEFIADNN--LIAHNASFDRRFLDAEFSRFNH--VYQGD 114 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +L ++RR + L +L ++ H AL D+ + + +++ M+ Sbjct: 115 FSCSLLLSRRIFQDAPSHSLGALVNYINLS-GTGDFHRALYDAQMTAKLWMAML 167 >gi|328957363|ref|YP_004374749.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4] gi|328673687|gb|AEB29733.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4] Length = 940 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 10/186 (5%) Query: 1 MIRKN-KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M + N K V DIETTG + DR+I+ G V + D +R F + P + Sbjct: 1 MNKLNHKDTYAVVDIETTGGNVTSGDRMIQFGCVLIEDDKIVHR-FATTVNP-LTSIPKQ 58 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 L G++++ + P F + + ++ ++ +AHN +FD F++ ELQR L Sbjct: 59 IEHLTGLSNKSVALAPYFEDVAATIYNLL--EDCIIVAHNIQFDYIFLSGELQRCGMPAL 116 Query: 119 DPSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++ IDT+ +A+ P S LN L ++ I H + H A D+ + +++++++ Sbjct: 117 -KNKGIDTVELAQILLPTESSYRLNDLVSKFNIE--HTNPHQADSDAAVTAELFLELKNK 173 Query: 178 GSQINF 183 ++ Sbjct: 174 LKELPL 179 >gi|325288090|ref|YP_004263880.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489] gi|324323544|gb|ADY31009.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489] Length = 447 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 13/171 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D+ETTG + ++I EI + D K F + P L GI Sbjct: 1 MMYTIIDVETTG---QTNKITEIS-IFKFDGDKVVDEFTSLVNPEDV-IPYYITTLTGID 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P+F+ I + D ++ ++AHN FD I E + ++KD + + T Sbjct: 56 NAMVANAPTFAEIAQQVLDI--TEDTIFVAHNVNFDYNVIRNEFKAVDKDF--RRKKLCT 111 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + ++R+ P L LCK I I R H A D+ ++ K++V Sbjct: 112 VRLSRKLLPGHNSYSLGKLCKDLDIAIEGR--HRARGDAEATVTLF-KILV 159 >gi|332520671|ref|ZP_08397133.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4] gi|332044024|gb|EGI80219.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4] Length = 444 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 12/169 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D+ET+G + +RI EI + + + F + PN L GI Sbjct: 1 MFYTIIDVETSG---RTNRITEISIFKYHENKIIDE-FTSLVNPNCY-IPEHITALTGID 55 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P FS I ++ + ++ ++AHN FD I E +R+ D + + T Sbjct: 56 NNTVANAPEFSEIANKVLEI--TKDCIFVAHNVNFDYNVIRKEFKRLEIDF--TRKKLCT 111 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++R+ P R L LCK I I+ R H A D+ ++ K+ Sbjct: 112 VRLSRKLLPGHRSYSLGKLCKDLNICINGR--HRARGDAEATVILFKKL 158 >gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH] Length = 379 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAVEHRITEIGVVVV--NANHVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I + + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAPALLERLD--GKLFVAHNASFDRGFLRAEFERAGVAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALVPS--ARHRALADADLIWQFWQKL 172 >gi|322374613|ref|ZP_08049127.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C300] gi|321280113|gb|EFX57152.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C300] Length = 829 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 104/237 (43%), Gaps = 13/237 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + R +V D+E T SK +II++G V + + ++ + + P+ + Sbjct: 1 MNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + ++ ++ ++AHN +FD + L + P Sbjct: 58 LTGLTDQRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ +P + +L LC+ GI + H H AL D+ +++ + M + Sbjct: 115 -RVDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYMRQKLFE 171 Query: 181 INFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236 + G ++ + ++ I + + + L + EL H ++ K + Sbjct: 172 LPKGLLESLLNLADNLLYESYLVIEEVYQQQSLLSSPDLMEL--HGLFLKKESKALV 226 >gi|314929290|gb|EFS93121.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL044PA1] Length = 597 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 13/190 (6%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 ++ V D+ETTG + +I EIGAV++ FQ +CP G L GI Sbjct: 29 EVTFCVVDLETTGT-GEGAQITEIGAVKVRGGRVEGE-FQTLVCPTG-PIPASVQVLTGI 85 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD ++ P S++ + +F ++ +AHNA+FD+GF+ + N DP ++D Sbjct: 86 TDAMVRPAPPLSAVLPSWSEF--SRSTVLVAHNARFDIGFLKRAYAQHNYPWGDP-TLVD 142 Query: 126 TLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 TL++AR L++L + + + S H AL D+ DV ++ + Sbjct: 143 TLALARSVLSRGEVRNYKLSTLSQLF--RTTTMSSHRALADARATVDVLHGLIERVG--S 198 Query: 183 FGFKTNEDRF 192 FG T ED Sbjct: 199 FGVTTLEDLL 208 >gi|308807965|ref|XP_003081293.1| DNA helicase RecG (ISS) [Ostreococcus tauri] gi|116059755|emb|CAL55462.1| DNA helicase RecG (ISS) [Ostreococcus tauri] Length = 1259 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 82/183 (44%), Gaps = 18/183 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ETTGL + RIIE+ A L D + F + P P L GIT+ Sbjct: 195 IIVFDLETTGLSKEKSRIIELAAQSLTD---PSAAFSTLVNPGRFNIPPAIKALTGITNS 251 Query: 69 FLK--DKPSFSSIFSEFWDFFNE-------QNAEWIAHNAK-FDVGFINAELQRINKDPL 118 + D PSF+ +F F + +AHNA+ FD FI E +R+ ++ Sbjct: 252 MVSAPDVPSFAMAAEQFEMFIEQVRQSRPGAPVLLVAHNARQFDAAFIQYEYRRLGRELP 311 Query: 119 DPSRIIDTLSIARRKHP---SSRNDLNSLCKRYGITISHR--SKHGALLDSHLLSDVYIK 173 R DTL +AR+ + ++ L Y I + H A D+ +L+D+ K Sbjct: 312 SSWRFCDTLPLARQLLRPDGLGKFSMDVLRGHYDIELEGGDVQMHRAGTDARVLADILNK 371 Query: 174 MMV 176 M+ Sbjct: 372 MLE 374 >gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003] gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003] Length = 383 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + RI E+G VE+ T + + P + +L GIT+ Sbjct: 15 IVFVDLETTGGSTNEHRITEVGVVEVGPTGVT--RWSSLVDPQ-QPIPSFIQQLTGITNA 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+F +I E + N ++AHNA FD GF+ E +R+ ++ T+ Sbjct: 72 MVRGAPTFDAIAPELFARLN--GKLFVAHNASFDRGFLRGEFRRVGISFDPD--VLCTVR 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R PS R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 128 LSRALFPSEKRHGLDALVERHSLVPSDR--HRALADADLIWQFWQRL 172 >gi|210621010|ref|ZP_03292395.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275] gi|210154994|gb|EEA86000.1| hypothetical protein CLOHIR_00338 [Clostridium hiranonis DSM 13275] Length = 276 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 14/179 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 K+ IVFD+ETTGL++ + I EI A++ DY + F ++ P +K + Sbjct: 89 TTKDPECYIVFDLETTGLEAHKEAITEIAAIKF-DYDEPVEYFHTYVNPK-KKIREKITD 146 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GIT+E + P + F F ++ I+HN FD+ FI + + + Sbjct: 147 LTGITNEMVASAPPIEYVLPNFLKFIDK--YTLISHNVSFDMSFILDPMYNLGYKK-PGN 203 Query: 122 RIIDTLSIARRKHPS-------SRNDLNSLCKRYGITIS--HRSKHGALLDSHLLSDVY 171 + IDTL++ARR S L L + G+ + H AL D+ + +Y Sbjct: 204 KAIDTLALARRFMKDEDTGKRLSSYKLEDLKYQLGLPLDVYDIKSHNALYDTKVAYFLY 262 >gi|268680225|ref|YP_003304656.1| DNA polymerase III subunit epsilon [Sulfurospirillum deleyianum DSM 6946] gi|268618256|gb|ACZ12621.1| DNA polymerase III, epsilon subunit [Sulfurospirillum deleyianum DSM 6946] Length = 260 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 8/166 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + + DIE G D IIEIGAV + F + ++L GIT Sbjct: 70 KFCIVDIEANGSKPALDAIIEIGAVMVEKGKIVGE-FSSLAKTD--VLPESIVQLTGITL 126 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L PS +S+ F F ++A ++AHN FD FI+ L+ PL +R +DT+ Sbjct: 127 EELSFAPSLNSVLEGFRLFI--KDAVFVAHNVNFDYYFISHSLEMAGFGPLL-NRRLDTI 183 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +AR+ + + L++L + GIT + H AL D+ ++V + Sbjct: 184 DLARKCIEAPKYGLSALAEHLGITFENH--HRALYDAKATTEVLLH 227 >gi|62185003|ref|YP_219788.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3] gi|62148070|emb|CAH63824.1| DNA polymerase III, epsilon chain [Chlamydophila abortus S26/3] Length = 228 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 11/169 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I +D ETTG DRIIEI A + T +F ++ P EA K+HGIT Sbjct: 5 IFYDTETTGTQIDKDRIIEIAAYNHI----TKESFVTYVNPEI-PIPEEASKIHGITTST 59 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F + F +F +A +AHN FD + E +R +PL + ID+L Sbjct: 60 VISAPKFPEAYKHFCEFCGN-DAVLVAHNNDSFDFPLMEKECRRHALEPLSL-KTIDSLK 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 A++ P +++L L + YG + H AL D L +V+ ++ Sbjct: 118 WAQKYRPDLPKHNLQYLRQVYG--FAENQAHRALDDVITLHNVFSALIG 164 >gi|76363558|sp|P0C0B7|DPO3_STRPY RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|9789541|gb|AAF98345.1| DNA polymerase III alpha chain [Streptococcus pyogenes] Length = 1465 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 8/169 (4%) Query: 13 DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 D+ETTGL + N+ +I+I A ++ + + F F+ P G S +L GITD+ L+ Sbjct: 431 DVETTGLSAMNNDLIQIAASKMFKGNIVEQ-FDEFIDP-GHPLSAFTTELTGITDKHLQG 488 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 ++ F DF +++ +AHNA FDVGF+NA +R + P +IDTL AR Sbjct: 489 AKPLVTVLKAFQDFC--KDSILVAHNASFDVGFMNANYERHDL-PKITQPVIDTLEFARN 545 Query: 133 KHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +P R+ L L KR+ +++ H H A D+ + + + Sbjct: 546 LYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLKDARE 592 >gi|313837498|gb|EFS75212.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA2] gi|314971705|gb|EFT15803.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA3] gi|328906955|gb|EGG26721.1| GIY-YIG catalytic domain protein [Propionibacterium sp. P08] Length = 598 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 13/190 (6%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 ++ V D+ETTG + +I EIGAV++ FQ +CP G L GI Sbjct: 30 EVTFCVVDLETTGT-GEGAQITEIGAVKVRGGRVEGE-FQTLVCPTG-PIPASVQVLTGI 86 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD ++ P S++ + +F ++ +AHNA+FD+GF+ + N DP ++D Sbjct: 87 TDAMVRPAPPLSAVLPSWSEF--SRSTVLVAHNARFDIGFLKRAYAQHNYPWGDP-TLVD 143 Query: 126 TLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 TL++AR L++L + + + S H AL D+ DV ++ + Sbjct: 144 TLALARSVLSRGEVRNYKLSTLSQLF--RTTTMSSHRALADARATVDVLHGLIERVG--S 199 Query: 183 FGFKTNEDRF 192 FG T ED Sbjct: 200 FGVTTLEDLL 209 >gi|255321503|ref|ZP_05362661.1| mature parasite-infected erythrocyte surface antigen [Campylobacter showae RM3277] gi|255301359|gb|EET80618.1| mature parasite-infected erythrocyte surface antigen [Campylobacter showae RM3277] Length = 311 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 106/209 (50%), Gaps = 18/209 (8%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 R+N+++ V DIET+G + +IIEIGA++L + + F+ F+ Sbjct: 63 TRRNEIKDQIFCVVDIETSGG-INSGQIIEIGALKLQNGEIIGK-FETFVYAPY--VPEN 118 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 +L GIT E LK+ PS + + +F F + + ++AHN +FD GFI+A L+ + L Sbjct: 119 ISELTGITAEHLKNAPSLAFVMEQFKVFLGQ--SVFVAHNVRFDYGFISATLEALGYGEL 176 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +R + T+ +ARR S + L +L + GI +H H AL D+ ++++ + Sbjct: 177 L-NRKLCTIDLARRTIASPKYGLGTLKEILGIDNTH---HRALSDAIAAAEIFKYSL--- 229 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLK 207 ++ +T ED E K+ + LK Sbjct: 230 QKLPSEVRTTEDLI--EFSKSAKTMKRLK 256 >gi|294619947|ref|ZP_06699320.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1679] gi|291593804|gb|EFF25305.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1679] Length = 929 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L IDT+ Sbjct: 64 RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P L L + G H + H A D+ + + + + Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165 Query: 188 NEDRFFKEEKKTVPNISLLKR 208 E+R K T+ I+ L R Sbjct: 166 -EERMRKLPIITLEQIARLSR 185 >gi|46190621|ref|ZP_00121275.2| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Bifidobacterium longum DJO10A] Length = 211 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 11/172 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EIGAV + + ++ FQ + P R + L GITD Sbjct: 10 YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + F + A + HN FD+ F++ + I Sbjct: 68 MVADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 126 Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 DT+ I+R P+ R+ L L R+GI + +H AL D+ + M Sbjct: 127 YDTMQISRALFPAQRHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM 176 >gi|261363839|ref|ZP_05976722.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria mucosa ATCC 25996] gi|288568430|gb|EFC89990.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria mucosa ATCC 25996] Length = 479 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 10/161 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG + DR+ E+ + ++ ++ + P + +L GI+++ Sbjct: 34 VVVDLETTGGNLYQDRVTEVALLRF--DGQSVCRYEWLVNP-CKPIPEFVAQLTGISNKM 90 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K P F I S+ Q A +AHN++FD F+ E +R D P+ + T+ + Sbjct: 91 VKTAPLFEEIASQLLPLL--QGAVVVAHNSRFDYTFLRHEFRRAGIDFAAPA--LCTVQL 146 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 +RR +P +++L+S+ +R I + +R H A+ D LSD Sbjct: 147 SRRLYPEFYKHNLDSIIERNAIAVENR--HRAMTDVLALSD 185 >gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264] gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4] gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264] gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264] Length = 379 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAVEHRITEIGVVVV--NANHVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I + + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAPALLERLD--GKLFVAHNASFDRGFLRAEFERAGVAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALVPS--ARHRALADADLIWQFWQKL 172 >gi|269219439|ref|ZP_06163293.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269211135|gb|EEZ77475.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 589 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 11/200 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ +V D+ETTG + I EIGAV++ +T F + P G+ Sbjct: 37 TPLEEVTFVVVDLETTGAKPGPESITEIGAVKVR-GGETVGEFSTLVNP-GQPIPAFITS 94 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWI-AHNAKFDVGFINAELQRINKDPLDP 120 L GIT P +++ +F + + AHNA+FDVG + A + Sbjct: 95 LTGITTAMTARAPRIAAVIPSLIEFLCAGPSTVVAAHNARFDVGHLKAAFAGADFTW-PS 153 Query: 121 SRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R++DT+++ARR S L++L G T + H AL D+ DV M+ Sbjct: 154 VRVLDTVALARRAFSSDEVPNFKLSTLAGACGATTA--PNHRALDDARATVDVLHAML-- 209 Query: 178 GSQINFGFKTNEDRFFKEEK 197 G G ED + Sbjct: 210 GRLGPLGVTHLEDLATATDP 229 >gi|257884118|ref|ZP_05663771.1| DNA polymerase III [Enterococcus faecium 1,231,501] gi|257819956|gb|EEV47104.1| DNA polymerase III [Enterococcus faecium 1,231,501] Length = 929 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L IDT+ Sbjct: 64 RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P L L + G H + H A D+ + + + + Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165 Query: 188 NEDRFFKEEKKTVPNISLLKR 208 E+R K T+ I+ L R Sbjct: 166 -EERMRKLPIITLEQIARLSR 185 >gi|294622016|ref|ZP_06701159.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium U0317] gi|291598406|gb|EFF29480.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium U0317] Length = 929 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L IDT+ Sbjct: 64 RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P L L + G H + H A D+ + + + + Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165 Query: 188 NEDRFFKEEKKTVPNISLLKR 208 E+R K T+ I+ L R Sbjct: 166 -EERMRKLPIITLEQIARLSR 185 >gi|227510342|ref|ZP_03940391.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189994|gb|EEI70061.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 945 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 9/179 (5%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +K V DIETTG D S ++RII+ L+ + K T+ + P R+ ++L Sbjct: 3 SKTTYAVVDIETTGTDMSVDNRIIQFSC-TLVAHGKIVETYVSDINPQ-REVPERIIQLT 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E LK P+F + S+ + + ++AHN FD F+N E QR+ LD Sbjct: 61 GITPERLKKAPTFDQVSSKLYKLLS--GTVFVAHNVNFDFPFLNGEFQRVGYPELDI-EA 117 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 IDT+++++ P+ S L L + I H H A D+ + + + ++ + Sbjct: 118 IDTVTLSQILLPTLSSYRLQDLSAYFNII--HNHPHTADSDALATAKLLLILLRQVKML 174 >gi|69247318|ref|ZP_00604300.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase [Enterococcus faecium DO] gi|257890489|ref|ZP_05670142.1| DNA polymerase III [Enterococcus faecium 1,231,410] gi|258614363|ref|ZP_05712133.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Enterococcus faecium DO] gi|260558928|ref|ZP_05831115.1| DNA polymerase III [Enterococcus faecium C68] gi|293559766|ref|ZP_06676286.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1162] gi|314940162|ref|ZP_07847340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a04] gi|314942421|ref|ZP_07849264.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133C] gi|314950181|ref|ZP_07853466.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0082] gi|314952303|ref|ZP_07855314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133A] gi|314994254|ref|ZP_07859557.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133B] gi|68194888|gb|EAN09359.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase [Enterococcus faecium DO] gi|257826849|gb|EEV53475.1| DNA polymerase III [Enterococcus faecium 1,231,410] gi|260075036|gb|EEW63351.1| DNA polymerase III [Enterococcus faecium C68] gi|291606249|gb|EFF35663.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1162] gi|313591341|gb|EFR70186.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133B] gi|313595562|gb|EFR74407.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133A] gi|313598821|gb|EFR77666.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133C] gi|313640601|gb|EFS05181.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a04] gi|313643491|gb|EFS08071.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0082] Length = 929 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L IDT+ Sbjct: 64 RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P L L + G H + H A D+ + + + + Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165 Query: 188 NEDRFFKEEKKTVPNISLLKR 208 E+R K T+ I+ L R Sbjct: 166 -EERMRKLPIITLEQIARLSR 185 >gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 466 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 12/176 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 DIETTG DRI EIG L + + ++ + P +L GI+ + Sbjct: 12 AFVDIETTGSHFDRDRITEIGIKTLANDGI--QVWERLINPQTF-IPQNIQRLTGISPQM 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ +PSF + E + ++AHNA+FD GFI A +R+ D +++ T+ + Sbjct: 69 VEGQPSFDQVAKELKQEL--EGKIFVAHNARFDYGFIKASFKRVGIDFKP--KVLCTVKL 124 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY--IKMMVGGSQIN 182 +R P R++L+++ +G+ +S ++H AL D+ LL + + G ++N Sbjct: 125 SRLLFPEQPRHNLDTIINAHGLQVS--ARHRALGDADLLLQFWRVCEAKFGAEKLN 178 >gi|294789265|ref|ZP_06754503.1| exonuclease, DNA polymerase III, epsilon subunit family [Simonsiella muelleri ATCC 29453] gi|294482690|gb|EFG30379.1| exonuclease, DNA polymerase III, epsilon subunit family [Simonsiella muelleri ATCC 29453] Length = 450 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 84/172 (48%), Gaps = 9/172 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 ++ ++ D+E TG +DRI EI + + F + P ++ S +L GI Sbjct: 16 RLPVVILDLEATGGHFMHDRITEIAFLRF--DGQNVERFTQLVNPQ-KEISEFVTQLTGI 72 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++E + + P+F+ + + + +AHN++FD + E +R P+ + Sbjct: 73 SNEMVANAPTFADVIPHILPML--RGSLLVAHNSRFDYTLLRNEFRRAGVPFATPT--LC 128 Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 T+ ++R +P +++L+++ R+G+T S +H A D +L+D ++ Sbjct: 129 TVKLSRTLYPNEHKHNLDAVANRFGLT-SDGKRHRAWADVAILADFLQAALL 179 >gi|294616364|ref|ZP_06696157.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1636] gi|291590878|gb|EFF22594.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1636] Length = 929 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 8/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L IDT+ Sbjct: 64 RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A+ P L L + G H + H A D+ + + + + Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI 165 >gi|261209451|ref|ZP_05923814.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289566622|ref|ZP_06447041.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium D344SRF] gi|260076579|gb|EEW64343.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289161563|gb|EFD09444.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium D344SRF] Length = 929 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L IDT+ Sbjct: 64 RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P L L + G H + H A D+ + + + + Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165 Query: 188 NEDRFFKEEKKTVPNISLLKR 208 E+R K T+ I+ L R Sbjct: 166 -EERMRKLPIITLEQIARLSR 185 >gi|227431886|ref|ZP_03913909.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352353|gb|EEJ42556.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 797 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG K RII+IG + + + F+ F+ P G+ + +L I+ Sbjct: 7 FVVVDLETTGHSVKKGGRIIQIG-MTFIKKRQIVDHFESFVNP-GQLIDRQIQQLTHISQ 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +++ P F I + QN IAHN FD ++N E +R L S IDT+ Sbjct: 65 KDVQNAPYFEEIAPLLQNLL--QNTVIIAHNVNFDYPYLNDEFERTGFQLL-KSAAIDTV 121 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +A+ P + L L IT+ ++ H A D+H + +++K ++ Sbjct: 122 QLAQILFPMAPGYRLLDLTTYLNITL--KNAHRANADAHATALLFLKFWKKLEEL 174 >gi|314997169|ref|ZP_07862155.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a01] gi|313588743|gb|EFR67588.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium TX0133a01] Length = 929 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L IDT+ Sbjct: 64 RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P L L + G H + H A D+ + + + + Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165 Query: 188 NEDRFFKEEKKTVPNISLLKR 208 E+R K T+ I+ L R Sbjct: 166 -EERMRKLPIITLEQIARLSR 185 >gi|257883091|ref|ZP_05662744.1| DNA polymerase III [Enterococcus faecium 1,231,502] gi|257818749|gb|EEV46077.1| DNA polymerase III [Enterococcus faecium 1,231,502] Length = 929 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L IDT+ Sbjct: 64 RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P L L + G H + H A D+ + + + + Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165 Query: 188 NEDRFFKEEKKTVPNISLLKR 208 E+R K T+ I+ L R Sbjct: 166 -EERMRKLPIITLEQIARLSR 185 >gi|257879980|ref|ZP_05659633.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|257894416|ref|ZP_05674069.1| DNA polymerase III [Enterococcus faecium 1,231,408] gi|257814208|gb|EEV42966.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|257830795|gb|EEV57402.1| DNA polymerase III [Enterococcus faecium 1,231,408] Length = 929 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L IDT+ Sbjct: 64 RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P L L + G H + H A D+ + + + + Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165 Query: 188 NEDRFFKEEKKTVPNISLLKR 208 E+R K T+ I+ L R Sbjct: 166 -EERMRKLPIITLEQIARLSR 185 >gi|307297299|ref|ZP_07577105.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916559|gb|EFN46941.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 185 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 11/178 (6%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGIT 66 +V D ETTG + DRI+EI A+ + + +FQ + P + +HG+ Sbjct: 5 YLVIDTETTGSSPLEGDRILEIAAIPVYGNKILHNLSFQSLVNP-LVMIPAQITGIHGLK 63 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + D+P+ + +F F ++ A + HN D+ F + + PL + IDT Sbjct: 64 NEDVLDEPTMAEVFPRFRNYVG--GATIVGHNIVNDMTFFDIASKETGILPLANN-YIDT 120 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---MVGGSQI 181 + IA L S+ KR I H A+ D+ + + V++ + + G SQ+ Sbjct: 121 IDIAHEVFSEGPYGLKSIAKRLRIR--DVPTHRAMDDARVTAKVFLALARRLGGISQM 176 >gi|167854538|ref|ZP_02477319.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Haemophilus parasuis 29755] gi|219872178|ref|YP_002476553.1| ribonuclease T [Haemophilus parasuis SH0165] gi|167854293|gb|EDS25526.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Haemophilus parasuis 29755] gi|219692382|gb|ACL33605.1| ribonuclease T [Haemophilus parasuis SH0165] Length = 216 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 21/209 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53 + KN+ R +V D+ET GL+++ D ++EI A+ L Y + F + P Sbjct: 11 LLKNRFRGYLPVVVDVETGGLNAQTDALLEIAAITLKMDDDGYLHLDEKFHRHVKPFENA 70 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 +PEALK++GI D + +E + Q A +AHNA FD F Sbjct: 71 NINPEALKVNGIDVDNAERGAVPEDIAITEMFKMVRKAVKDNGCQRAVIVAHNATFDQAF 130 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A ++RIN +DP P + DT ++A + + L C+ I + H AL D Sbjct: 131 LQAAVKRINTKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAQIPFDGKQAHSALYD 188 Query: 164 SHLLSDVYIKMMVGGSQINFGFKTNEDRF 192 + ++++ M+ + GF + R Sbjct: 189 TERTAELFCAMVNKLKDLG-GFPDLKARM 216 >gi|163847184|ref|YP_001635228.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus J-10-fl] gi|222525025|ref|YP_002569496.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl] gi|163668473|gb|ABY34839.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus J-10-fl] gi|222448904|gb|ACM53170.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl] Length = 951 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 15/205 (7%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N + D+ETTGL S D IIE+ AV + +R F+ + P + +L Sbjct: 1 MNNRIYVAIDVETTGLQSGLDEIIEVAAVTFRGHEILDR-FEQLVRPRQA-VPLKITRLT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI L P F+ I ++ F + + H+ FD+ + A+ + N + Sbjct: 59 GIDPAALAQAPRFNEIGADLARFIGNR--PIVGHSIGFDLTMLRAQGMQFN------QPV 110 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 DT +A P S L++L GI H H AL D+ + + ++ M+ + Sbjct: 111 YDTFELATLLLPQVSSYKLSALAAHLGIP--HPDAHRALNDAEVTARLFA--MLSERMLQ 166 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLK 207 T + K P L + Sbjct: 167 LDLATLSEMVRLMGKIGTPLRDLFE 191 >gi|227505453|ref|ZP_03935502.1| possible exonuclease, RNase T and DNA polymerase III [Corynebacterium striatum ATCC 6940] gi|227197946|gb|EEI77994.1| possible exonuclease, RNase T and DNA polymerase III [Corynebacterium striatum ATCC 6940] Length = 1118 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 95/231 (41%), Gaps = 22/231 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D ETTG S DR+IEIG V L + T++ + P ++ P + +H IT Sbjct: 6 RYAVVDFETTGFGS-TDRVIEIGVVLLDHNREVESTWETLVQPQ--RDIPNSF-VHHITP 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDT 126 + D P F + EF+D N + +AHNA F+V F+ E + + +DT Sbjct: 62 TDVVDAPLFGEVAGEFFDLLNGR--TVVAHNAPFEVRFLQREFSNLGVAWPNYGAWVVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + ++ +P L K GIT + H AL D+ ++++ ++ G Sbjct: 120 KRLFQQTYPGEGTTLEHALKVVGITNA--RPHSALADTLATAELFAWLVSQG-------- 169 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD--KTIQTLGKNA 235 D T+P R L E+L H + + L A Sbjct: 170 --NDVVISSRAITLPPHEFPARGALLPRTALAEDLT-HKRGEWLARLADTA 217 >gi|217076887|ref|YP_002334603.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B] gi|217036740|gb|ACJ75262.1| DNA polymerase III PolC-type [Thermosipho africanus TCF52B] Length = 186 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGIT 66 V D ETTGL+ DRIIEI V + + + + PN R K+HGI+ Sbjct: 7 YCVMDTETTGLNPYFGDRIIEIAIVPVYKNKIVKKWIYHSLVNPNIR-IPALTEKIHGIS 65 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ + D PS +I S + + ++ HNA D+ FI+ + I + P++ R IDT Sbjct: 66 NDAITDAPSLENIISNVRAY--AKGTIFVMHNAYVDLSFIDIATKEIGEFPIN-FRYIDT 122 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L I++ + + + L SL K + I + + H AL D+ L + V++K+ Sbjct: 123 LEISQVLY-NKKRSLESLVKEFKI--ADKVPHRALEDAILTAKVFLKL 167 >gi|125624340|ref|YP_001032823.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris MG1363] gi|124493148|emb|CAL98112.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris MG1363] gi|300071124|gb|ADJ60524.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. cremoris NZ9000] Length = 277 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 4/167 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +VFD ETTG ++ + II+IGAV+ + ++ F + S E +L GI Sbjct: 4 KYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQLVKNQRSYVSTEITQLTGIKP 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L ++P+ I +F DF + +AHNA FD+ F+ + ++ R+ DTL Sbjct: 64 ADLLNQPTIEEILPDFLDFI--KGHLVVAHNAPFDISFLYQAIIDCAITDVEAFRVYDTL 121 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +++ S L + + ++ H AL D + + +Y + Sbjct: 122 AESKKLLTMSSYALENFKDL--LEMNDLRSHDALNDCLITAKLYQYL 166 >gi|108800255|ref|YP_640452.1| hypothetical protein Mmcs_3289 [Mycobacterium sp. MCS] gi|119869383|ref|YP_939335.1| hypothetical protein Mkms_3351 [Mycobacterium sp. KMS] gi|108770674|gb|ABG09396.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119695472|gb|ABL92545.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] Length = 630 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 20/214 (9%) Query: 2 IRKNKMRKIVFDIETTGLDSKN---DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 + +V D+ETTG + D I EIGAV++ + P GR P+ Sbjct: 23 LSLRDTTFVVVDLETTGGRATGERPDAITEIGAVKVRGGEVLGE-LATLVDP-GRAIPPQ 80 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + L GIT + P S+ F +F + + +AHNA FD+GF+ A ++ Sbjct: 81 IVSLTGITTAMVCAAPRIESVLPAFLEF--ARGSVLVAHNAGFDIGFLRAAAEQCALTWP 138 Query: 119 DPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P ++ T+ +ARR L++L + + + H AL D+ DV ++ Sbjct: 139 RP-PVLCTVKLARRVLTRDEAPSVRLSALAQLFRAKTT--PTHRALDDARATVDVLHGLI 195 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 N G T + + + +P+++ +R Sbjct: 196 E--RIGNQGVHT-----YTDLRAYLPDVTPAQRR 222 >gi|307704598|ref|ZP_07641501.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK597] gi|307621843|gb|EFO00877.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK597] Length = 816 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D +R + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIVDR-YTTDVNPH-EPLDAHIQELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMAQLPKGL 176 >gi|293553821|ref|ZP_06674436.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1039] gi|291602027|gb|EFF32264.1| DnaQ family exonuclease/DinG family helicase, putative [Enterococcus faecium E1039] Length = 929 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 22/201 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG + K DRII+ G V + T+R F + + P GRK S + L GIT++ Sbjct: 6 YAVVDIETTGTNPKEDRIIQFGCVMIESGRITSR-FSIDIHP-GRKISKQIQHLTGITNQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + ++ + ++AHN FD F+N EL R L IDT+ Sbjct: 64 RVQKAPYFEDVAQTIYNLLA--DTIFVAHNIYFDYNFLNHELMRCGLPSLKI-PGIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P L L + G H + H A D+ + + + + Sbjct: 121 LAQIFLPTEPSFRLADLSESLG--FIHENPHQADSDAEVTGQLLLLI------------- 165 Query: 188 NEDRFFKEEKKTVPNISLLKR 208 E+R K T+ I+ L R Sbjct: 166 -EERMRKLPIITLEQIARLSR 185 >gi|126700009|ref|YP_001088906.1| putative DNA polymerase III subunit epsilon [Clostridium difficile 630] gi|254975983|ref|ZP_05272455.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-66c26] gi|255093371|ref|ZP_05322849.1| putative DNA polymerase III, epsilon chain [Clostridium difficile CIP 107932] gi|255101551|ref|ZP_05330528.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-63q42] gi|255307420|ref|ZP_05351591.1| putative DNA polymerase III, epsilon chain [Clostridium difficile ATCC 43255] gi|255315116|ref|ZP_05356699.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-76w55] gi|255517786|ref|ZP_05385462.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-97b34] gi|255650901|ref|ZP_05397803.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-37x79] gi|260683972|ref|YP_003215257.1| putative DNA polymerase III subunit epsilon [Clostridium difficile CD196] gi|260687632|ref|YP_003218766.1| putative DNA polymerase III subunit epsilon [Clostridium difficile R20291] gi|306520788|ref|ZP_07407135.1| putative DNA polymerase III, epsilon chain [Clostridium difficile QCD-32g58] gi|115251446|emb|CAJ69279.1| DNA polymerase III, epsilon subunit [Clostridium difficile] gi|260210135|emb|CBA64288.1| putative DNA polymerase III, epsilon chain [Clostridium difficile CD196] gi|260213649|emb|CBE05485.1| putative DNA polymerase III, epsilon chain [Clostridium difficile R20291] Length = 168 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 5/166 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGLD I + + + + + + P G S +L I++E Sbjct: 4 YVVVDLETTGLDPYKGCEIIEIGITEIKNEQIVKNYSRLIKPKG-IISSFITELTHISNE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++++ + F + ++ IAHNAKFD+ F+N L+ ++ +P++ L Sbjct: 63 MVENEEPLELVLPRFRKYIGDR--TIIAHNAKFDLKFLNYYLRMLDLEPINNYICTVELL 120 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + L + C Y I + H A D+ + +++K+ Sbjct: 121 KKCKSYKGKNKKLETACAYYNIENIN--AHRADSDTLATAKLFLKI 164 >gi|119718032|ref|YP_924997.1| exonuclease, RNase T and DNA polymerase III [Nocardioides sp. JS614] gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp. JS614] Length = 405 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 98/254 (38%), Gaps = 28/254 (11%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D+ETTGL K+DRI+EIG +E+ D R + + P R P +HGIT Sbjct: 4 YTIIDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATLVNPQ-RDVGP--THIHGITA 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P+F + + +AHNA+FD F++ E +R + P+ + T+ Sbjct: 61 RDVLDAPTFQEVAPYLIGSLAGR--TLVAHNARFDTQFLDYEFERASVGTRPPTPSLCTM 118 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++ + L C + H +H AL D+ ++ + +V + Sbjct: 119 QLSSSYLRGASRKLKDCCVAANVP--HADEHTALGDARAVAGLLNYYLVNTDRPVPWSAV 176 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE----------------HDKTIQTL 231 E P R + + T E + + L Sbjct: 177 LESTRRHWWPAPGPT---PGRPRSVLRSATPREPAAWLDRITSTLPRNPNPMVEAYLDVL 233 Query: 232 GKNAIWDRYISSNQ 245 + A+ D Y+S+++ Sbjct: 234 -EQALLDGYLSAHE 246 >gi|134292561|ref|YP_001116297.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] gi|134135718|gb|ABO56832.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 205 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL DR EI + L D +R +Q + GR+ + + L GIT+E Sbjct: 5 AVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTGITNE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S + E F +AHNA FD F AEL + P T+ Sbjct: 63 MIATAPPVSKVMKEAAAFVGSH--PVVAHNAGFDKRFWQAELGSLGVAADHPFA--CTML 118 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR +P +R + L+SL + + R H A++D+ + S ++ +M Sbjct: 119 VARRLYPHARSHRLSSLADLLRLPQAGR-AHRAMVDAEIASHLWCRM 164 >gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD] Length = 1457 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 11/188 (5%) Query: 2 IRKNKM----RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 +R+N+ R +VFD+ETTGL K + +IE GAV + +T + + P K Sbjct: 393 LRQNQDLEHARYVVFDLETTGLSPKFNELIEFGAVVWQNG-QTLEKHEFLIKPK-EKIPS 450 Query: 58 EALKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 L GIT++ ++ + S + F QN+ +AHNA+FD G + + + Sbjct: 451 YISDLTGITNQMIENEAISVEEAAIKIKQIF--QNSILVAHNARFDYGCLVEFFKELELY 508 Query: 117 PLDPSRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 L+ +IDTL ++R P R++L L K I H D+ +L+ V+ + + Sbjct: 509 ELE-QPVIDTLEVSRFLAPTQKRHNLKELAKNASIHYDETESHRGGYDAEVLAKVWDQFL 567 Query: 176 VGGSQINF 183 + + N Sbjct: 568 IKLIEKNI 575 >gi|307709092|ref|ZP_07645551.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK564] gi|307620038|gb|EFN99155.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK564] Length = 816 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIVD-HYSTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPEMEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKIAQLPKGL 176 >gi|317128725|ref|YP_004095007.1| exonuclease RNase T and DNA polymerase III [Bacillus cellulosilyticus DSM 2522] gi|315473673|gb|ADU30276.1| Exonuclease RNase T and DNA polymerase III [Bacillus cellulosilyticus DSM 2522] Length = 242 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 9/185 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEA 59 I +K+ +VFD+ETTG N DRI+ IG +++ + TF + NG S E Sbjct: 50 IPFSKLDVVVFDLETTGFYPNNGDRILSIGGIKVKGDKVIDSETFYSLINSNGG-VSEEI 108 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 KL IT++ L + P + + F+ F + +AH+A + F+ I K + Sbjct: 109 TKLTNITEKDLIEAPPINDVLQNFYTFMS--GCTLVAHHANHERSFMQHMTWSILKSRFE 166 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 RIIDT + + P+ L+ C YGITI R H AL D+ + ++ + + Sbjct: 167 -HRIIDTAFLTKIVEPNKNLVSLDECCDHYGITIKKR--HHALYDAIATAQLWTESVREI 223 Query: 179 SQINF 183 + F Sbjct: 224 QNLGF 228 >gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581] gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae] Length = 1455 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 7/171 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFD+ETTGL + IIE GAV + D +T + Q F+ E K+ IT Sbjct: 400 RYVVFDLETTGLSPVYNEIIEFGAVVIQDGIQT-ESHQFFVK-AKEPIPTEITKITNITQ 457 Query: 68 EFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + ++ + F +++ +AHNAKFD F+ ++ +D IIDT Sbjct: 458 EMVDEQGIEATEAFYRISKII--KDSILVAHNAKFDFNFLAELFKKEASMTID-QPIIDT 514 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 L ++R +PS + + L ++ K G+ H A D+ +LS V++ + Sbjct: 515 LQVSRFLNPSQKSHSLKNVSKLIGLYYDETVAHRADYDAEILSKVWLNFLT 565 >gi|118473161|ref|YP_890494.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str. MC2 155] gi|118174448|gb|ABK75344.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str. MC2 155] Length = 337 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 100/247 (40%), Gaps = 32/247 (12%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG RI+ + A+ + D + L P P +HG+T E Sbjct: 24 WAVVDVETTGFRPGQARIVSVAALAVGDDGSVEHSMSSLLNPG---VDPGPTHVHGLTAE 80 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ +P F+ + E + + +AHNA FD F+ AE + + + L + T+ Sbjct: 81 MLEGQPCFADVVDELIEVL--RGRTLVAHNAGFDYSFLAAEAELVGAE-LPIDTAMCTVE 137 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY---------------I 172 +ARR + N L +L +G+ + H AL D+ +L+ + + Sbjct: 138 LARRLELGTENLRLETLAAHWGV--TQMKPHDALDDALVLAQILKPTLARARDRKVWLPL 195 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLF----TRITKEELDEH 224 + + N +E R K E +P N +PL ++ E + H Sbjct: 196 RQLTRKRWPNGHVTHDELRPLKVEASRLPCRYANPGPFVAGRPLVQGMRVALSAEVVRTH 255 Query: 225 DKTIQTL 231 ++ ++ + Sbjct: 256 EELLERV 262 >gi|330793394|ref|XP_003284769.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum] gi|325085263|gb|EGC38673.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum] Length = 501 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 5/173 (2%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K R I FD+ET+G ++ D IIEIGAVEL+D +T FQ + P + P A ++H + Sbjct: 286 KGRVICFDLETSGFSAE-DSIIEIGAVELIDGCRTGVIFQSYAKPK-AQIHPRAEEIHQL 343 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + L+ P + F D+ ++ IAHN FD + EL R + Sbjct: 344 NNYLLQYSPPIEVMLCSFMDWVG--DSPLIAHNLSFDKRMLLQELVRYKIPFDNDHICFC 401 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMMVG 177 T+ R+ + L+S+ ++ I + R HGAL+D+ +LS VY ++ Sbjct: 402 TMKYFRKVYMGLNYSLDSVSQKLKINKLLLRKTHGALVDAEILSIVYTHLLTA 454 >gi|322833483|ref|YP_004213510.1| ribonuclease T [Rahnella sp. Y9602] gi|321168684|gb|ADW74383.1| ribonuclease T [Rahnella sp. Y9602] Length = 238 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 22/217 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI A+ L + +++ T + P G P Sbjct: 24 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEDGWLQSDETVHFHVEPFEGAILVP 83 Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109 EAL +GI L+ S E + + A +AHNA FD F+ A Sbjct: 84 EALAFNGIDPTNPLRGAVSEYEALHEIFKVIRKGMKEQNCNRAIIVAHNANFDHSFLMAA 143 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L C GI H AL D+ Sbjct: 144 AERAGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACISAGIVFDSSQAHSALYDTERT 201 Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKEEKKT 199 ++++ +++ +GG + + ED EE + Sbjct: 202 AELFCELVNRWKRLGGWPLALSDEEVEDETASEENQQ 238 >gi|227501930|ref|ZP_03931979.1| possible exonuclease [Corynebacterium accolens ATCC 49725] gi|227077314|gb|EEI15277.1| possible exonuclease [Corynebacterium accolens ATCC 49725] Length = 1118 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 97/231 (41%), Gaps = 22/231 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D ETTG S DR+IEIG V L + T++ + P ++ P + +H IT Sbjct: 6 RYAVVDFETTGFGS-TDRVIEIGVVLLDHNREVESTWETLVQPQ--RDIPNSF-VHRITP 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDT 126 + D P F + EF++ N + +AHNA F+V F+ E + + +DT Sbjct: 62 TDVVDAPLFGEVAGEFFELLNGR--TVVAHNAPFEVRFLQREFSNLGVAWPNYGAWVVDT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + ++ +P L + GIT + H AL D+ ++++ +++ G+ Sbjct: 120 KRLFQQTYPGEGTTLEHALEVVGITNA--RPHSALADALATAELFAQLVSQGT------- 170 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHD--KTIQTLGKNA 235 D T+P R L E+L H + + L A Sbjct: 171 ---DVVISSRAITLPPHEFPARGALLPRTALAEDLT-HKRGEWLARLADTA 217 >gi|319950859|ref|ZP_08024742.1| DNA polymerase III [Dietzia cinnamea P4] gi|319435472|gb|EFV90709.1| DNA polymerase III [Dietzia cinnamea P4] Length = 313 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 9/209 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ET+G+ DR++ + AV + D + F L P P + +HG+T Sbjct: 4 WVVVDVETSGMTPAVDRVLSVAAVVIGDDGEVVEEFATLLNPG---VDPGPVHVHGLTPA 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L KP FS + +E + + +AHNA FD F+ AE +R P R + TL Sbjct: 61 LLAGKPRFSDVAAELGRVLDGR--TVVAHNAAFDASFLAAEARRAGLAP-PLERFVCTLD 117 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 A R H S+ + L++L +G+ R+ H A D+ L+ V+ ++ + Sbjct: 118 FAGRLHLSTADLKLSTLAAHFGVR--QRAAHDAHDDALALAGVFAGLLEVAAAKGVRPSV 175 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 E +T +S + + R+ Sbjct: 176 RELDAMVAHPETGYLVSTVWAEALAAPRL 204 >gi|317051112|ref|YP_004112228.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5] gi|316946196|gb|ADU65672.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5] Length = 169 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D+ETTGL + R+IEI AV++ L G S +HGIT Sbjct: 4 FVAIDVETTGLSPARGARVIEIAAVKMEQGQVIAEFCS--LIQVGVPVSAATTGVHGITT 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L +P+ I+ +F F ++ +AHNA FD+ F+++ELQR+ +PS TL Sbjct: 62 AMLAGQPAPGEIWPQFIWFI--EHHPIVAHNAPFDMRFVHSELQRLGLSMANPS--HCTL 117 Query: 128 SIARRKHPS-SRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKM 174 + RRK+P + L L + G H AL D+ L + V+ +M Sbjct: 118 RLGRRKYPRLPNHKLEYLAQHVLGKLPPEIQLHRALGDARLTAMVWEEM 166 >gi|242242736|ref|ZP_04797181.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis W23144] gi|242233872|gb|EES36184.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis W23144] Length = 902 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I +E Sbjct: 6 FAVVDLETTGNQLDYDEIIQIGITFVRQNQVID-TYHSMIR-TDLEIPPFIQALTSIEEE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + + + ++ ++AHN FD+ FI ++ N P R++DTL Sbjct: 64 MLVQAPYFNEVADDIYQLI--KDCVFVAHNISFDLNFIKKAFEKCNIQ-FKPKRVMDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + P L++L + + I +++ H A D+ + + IK Q++ Sbjct: 121 LFKIAFPTDKSYQLSALAESHHIPLNN--AHRADEDATTTAKLMIKAFEKFEQLHL 174 >gi|227524493|ref|ZP_03954542.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus hilgardii ATCC 8290] gi|227088363|gb|EEI23675.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus hilgardii ATCC 8290] Length = 945 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 9/179 (5%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +K V DIETTG D S ++RII+ L+ + K T+ + P R+ ++L Sbjct: 3 SKTTYAVVDIETTGTDMSVDNRIIQFSC-TLVAHGKIVETYVSDINPQ-REVPERIIQLT 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E LK P+F + S+ + + ++AHN FD F+N E QR+ LD Sbjct: 61 GITPERLKKAPTFDQVSSKLYKLLS--GTVFVAHNVNFDFPFLNGEFQRVGYPELDI-EA 117 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 IDT+++++ P+ S L L + I H H A D+ + + + ++ + Sbjct: 118 IDTVTLSQILLPTLSSYRLQDLSTYFNII--HNHPHTADSDALATAKLLLILLRQVKML 174 >gi|317497265|ref|ZP_07955589.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA] gi|316895510|gb|EFV17668.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA] Length = 235 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL +D+IIEIGAV++ D + + + + P + S + L GI+ + Sbjct: 4 YVAFDLETTGLSPDSDQIIEIGAVKIRDGKISGK-YNCIIHPEI-EVSDFIINLTGISRD 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ EF +F + + HN FD F+ +DTL Sbjct: 62 MLRKGIPLKEGVEEFLEF--SGDLPVLGHNVMFDYKFMKMAAASFKYPFEKTG--VDTLK 117 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR+ N L +LC Y +++ H A D+ + V+ +M Sbjct: 118 VARKLLTGLENKKLETLCAHYH--YVNQAAHRAYDDALATAVVFEQM 162 >gi|227513350|ref|ZP_03943399.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus buchneri ATCC 11577] gi|227083223|gb|EEI18535.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus buchneri ATCC 11577] Length = 945 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 9/179 (5%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +K V DIETTG D S ++RII+ L+ + K T+ + P R+ ++L Sbjct: 3 SKTTYAVVDIETTGTDMSVDNRIIQFSC-TLVAHGKIVETYVSDINPQ-REVPERIIQLT 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E LK P+F + S+ + + ++AHN FD F+N E QR+ LD Sbjct: 61 GITPERLKKAPTFDQVSSKLYKLLS--GTVFVAHNVNFDFPFLNGEFQRVGYPELDI-EA 117 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 IDT+++++ P+ S L L + I H H A D+ + + + ++ + Sbjct: 118 IDTVTLSQILLPTLSSYRLQDLSTYFNII--HNHPHTADSDALATAKLLLILLRQVKML 174 >gi|27468061|ref|NP_764698.1| dinG protein [Staphylococcus epidermidis ATCC 12228] gi|57866955|ref|YP_188602.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus epidermidis RP62A] gi|251810883|ref|ZP_04825356.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis BCM-HMP0060] gi|282876111|ref|ZP_06284978.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus epidermidis SK135] gi|293366576|ref|ZP_06613253.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|81819394|sp|Q5HP88|DING_STAEQ RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81842831|sp|Q8CP71|DING_STAES RecName: Full=Probable ATP-dependent helicase dinG homolog gi|27315606|gb|AAO04740.1|AE016747_237 dinG protein [Staphylococcus epidermidis ATCC 12228] gi|57637613|gb|AAW54401.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus epidermidis RP62A] gi|251805563|gb|EES58220.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis BCM-HMP0060] gi|281295136|gb|EFA87663.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus epidermidis SK135] gi|291319345|gb|EFE59714.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|329725381|gb|EGG61864.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU144] gi|329735254|gb|EGG71546.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU045] gi|329737465|gb|EGG73719.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU028] Length = 902 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I +E Sbjct: 6 FAVVDLETTGNQLDYDEIIQIGITFVRQNQVID-TYHSMIR-TDLEIPPFIQALTSIEEE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + + + ++ ++AHN FD+ FI ++ N P R++DTL Sbjct: 64 MLVQAPYFNEVADDIYQLI--KDCVFVAHNISFDLNFIKKAFEKCNIQ-FKPKRVMDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + P L++L + + I +++ H A D+ + + IK Q++ Sbjct: 121 LFKIAFPTDKSYQLSALAESHHIPLNN--AHRADEDATTTAKLMIKAFEKFEQLHL 174 >gi|257869632|ref|ZP_05649285.1| DNA polymerase III [Enterococcus gallinarum EG2] gi|257803796|gb|EEV32618.1| DNA polymerase III [Enterococcus gallinarum EG2] Length = 920 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 8/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D DRII+ G V + D NR F + P+ R+ S + L IT++ Sbjct: 5 YAVVDLETTGTDPAIDRIIQFGCVLIQDGQVINR-FATDINPD-RRISKQIQNLTHITNQ 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K P F + ++ + ++AHN FD F++ EL R L+ IDT+ Sbjct: 63 QVKRAPYFEDVAHTIYNLLTQ--TVFVAHNIYFDYHFLSQELIRCGMPSLEI-PGIDTVE 119 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A+ P S L L + I H + H A D+ + + + + + Sbjct: 120 LAQVFLPTESSFRLGDLAE--SIGFVHENPHQADSDAEVTAALLLYI 164 >gi|269302439|gb|ACZ32539.1| exonuclease, DNA polymerase III, epsilon subunit family [Chlamydophila pneumoniae LPCoLN] Length = 249 Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 5/174 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M D E TGLD K DRIIEI AV + + + + P R S E+ Sbjct: 1 MSLLKDTVFTCLDCEMTGLDVKKDRIIEIAAVRFT-FDSVISSIEFLINPE-RVVSAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++H I++ L+D+P + +F + FF E + + H+ FD+ ++ E++RI + L Sbjct: 59 RVHHISNAMLRDQPKIAEVFPQIKAFFKEGD-YIVGHSVGFDLQVLSQEMERIGETFLSK 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IIDTL +A+ S N L SL + + H A+ D + +++ + Sbjct: 118 YTIIDTLRLAKEYGDSPNNSLESLAVHFNVPYDGN--HRAMKDVEININIFKHL 169 >gi|170733343|ref|YP_001765290.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3] gi|169816585|gb|ACA91168.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia MC0-3] Length = 212 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 11/178 (6%) Query: 1 MIRKNK--MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 M N V D ETTGL DR EI + L D +R FQ + GR+ Sbjct: 1 MTPPNSTMQTVAVLDFETTGLSPNLGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPS 58 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + + L GIT++ + P S + E F + +AHNA FD F +EL + Sbjct: 59 DVVALTGITNDMIATAPPASEVMKEAAAFVGKH--AVVAHNAGFDKRFWQSELGMLGMSA 116 Query: 118 LDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ +ARR +P +R + L+SL + + + R H A++D+ + ++ ++ Sbjct: 117 DHAFA--CTMLVARRIYPDARSHRLSSLAEMLRLPQTGR-AHRAMVDAEMAGHLWCRL 171 >gi|332361545|gb|EGJ39349.1| DNA polymerase III [Streptococcus sanguinis SK1056] Length = 814 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +N + V D+E TG S + +II+IG + L++ +T++ + P+ + + Sbjct: 1 MTQNDYKYAVVDLEATGTGS-SAKIIQIG-IALIENGIITKTYETDVNPH-EELDEHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+ DE L P FS + +E ++ Q+A ++AHN KFD + L D L P Sbjct: 58 LTGLDDERLGRAPEFSQVAAEVYELI--QDAIFVAHNVKFDANLLAEALFWEGFDLLTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ +P+ + L +LC I++ + H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFYPTFDKYSLGNLCGLLDISLEN--AHTALADAQATAQLFLKI 165 >gi|320531410|ref|ZP_08032377.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136382|gb|EFW28363.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 299 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 84/218 (38%), Gaps = 12/218 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +V D+ETTG + EIGAV++ F + P G + Sbjct: 15 TPLERATFVVVDLETTGGAPGARSLTEIGAVKVRGGQVLAD-FSTLVNP-GVAIPAQITM 72 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L GIT+ + P S+ F + + +AHNA+FDVG + + + + Sbjct: 73 LTGITNAMVAGAPGVSTCVEAFLSWADLLADDVVLVAHNARFDVGHLRGAAAALGLEWPE 132 Query: 120 PSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 P R++DTL++AR+ + L +L G R H AL D+ DV + Sbjct: 133 P-RVLDTLALARKAWTRSEVPNHKLGTLAAFVG--SRTRPSHRALDDARATVDVLHAALE 189 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214 + + G ED + + + L + Sbjct: 190 VMAPL--GVTHLEDLATASDPVPAKRRAKSRLADALPS 225 >gi|301166002|emb|CBW25576.1| putative DNA polymerase III PolC-type alpha subunit [Bacteriovorax marinus SJ] Length = 295 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 99/216 (45%), Gaps = 9/216 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL D++IE+ A+++ Y + F + P + + +HGIT++ Sbjct: 20 IVALDLETTGLSPLIDKVIELSAIKVTPYGE--EVFDELIDPKI-EIPKFTIDIHGITND 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ K + + EF +F +AHNAKFD+GFI + +I PL S + + Sbjct: 77 MVQGKRTLDKVLPEFINFIGS--LPLVAHNAKFDLGFIVFGMHQIGL-PLHESHVYCSCK 133 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +R S N L++L I + + H AL D+ VY + + + + Sbjct: 134 FSRYALRGSTNFKLSTLTTELEIPLENH--HRALDDAIACLKVYERGLRVFKKPDRKILN 191 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 F ++ + + K+ KPL ++ +E+ E Sbjct: 192 EGHLFKLKDFDKQDDFEIPKKLKPLQDKVKDQEMIE 227 >gi|307702203|ref|ZP_07639163.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis ATCC 35037] gi|307624216|gb|EFO03193.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis ATCC 35037] Length = 829 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 104/237 (43%), Gaps = 13/237 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + R +V D+E T SK +II++G V + + ++ + + P+ + Sbjct: 1 MNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIIDQ-YATDVNPH-EPLDSHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + ++ ++ ++AHN +FD + L + P Sbjct: 58 LTGLTDQRLAVAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT+ +A+ +P + +L LC+ GI + H H AL D+ +++ + M + Sbjct: 115 -RVDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQATAELLLYMRQKLFE 171 Query: 181 INFG-FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236 + G ++ D ++ I + + + L + EL H ++ K + Sbjct: 172 LPKGLLESLLDLADNLLYESYLLIEEVYQQQSLLSSPDLMEL--HGLFLRKESKALV 226 >gi|167767436|ref|ZP_02439489.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1] gi|167710728|gb|EDS21307.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1] gi|291558729|emb|CBL37529.1| exonuclease, DNA polymerase III, epsilon subunit family [butyrate-producing bacterium SSC/2] Length = 235 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGL +D+IIEIGAV++ D + + + + P + S + L GI+ + Sbjct: 4 YVAFDLETTGLSPDSDQIIEIGAVKIRDGKISGK-YNCIIHPEI-EVSDFIINLTGISRD 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ EF +F + + HN FD F+ +DTL Sbjct: 62 MLRKGIPLKEGVEEFLEF--SGDLPILGHNVMFDYKFMKMAAASFKYPFEKTG--VDTLK 117 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR+ N L +LC Y +++ H A D+ + V+ +M Sbjct: 118 VARKLLTGLENKKLETLCAHYH--YVNQAAHRAYDDALATAVVFEQM 162 >gi|319400807|gb|EFV89026.1| putative dnaQ family exonuclease/DinG family helicase [Staphylococcus epidermidis FRI909] Length = 902 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I +E Sbjct: 6 FAVVDLETTGNQLDYDEIIQIGITFVRQNQVID-TYHSMIR-TDLEIPPFIQALTSIEEE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + + + ++ ++AHN FD+ FI ++ N P R++DTL Sbjct: 64 MLVQAPYFNEVADDIYQLI--KDCVFVAHNISFDLNFIKKAFEKCNIQ-FKPKRVMDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + P L++L + + I +++ H A D+ + + IK Q++ Sbjct: 121 LFKIAFPTDKSYQLSALAESHHIPLNN--AHRADEDATTTAKLMIKAFEKFEQLHL 174 >gi|307326641|ref|ZP_07605834.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] gi|306887625|gb|EFN18618.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] Length = 638 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 11/205 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ET+GL ++ DR++ + + + + F L P P +K+HG+T E L+ Sbjct: 23 VDVETSGLMARRDRVLSVAVITVGPDGEQTGEFSTLLNPGC---DPGPVKVHGLTVERLQ 79 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P+F + Q+ +AHNA+FD F+ E R + L S+ + TL++ R Sbjct: 80 GAPTFDQVAGRIGAML--QDRVLVAHNAQFDYDFLAHEFARA-RTWLPVSQRLCTLALNR 136 Query: 132 RKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + P+ L +L YGI + H AL D+ +L+ + + +Q++ Sbjct: 137 QVDPPTGDMKLGTLAAHYGIP--QQRAHDALDDTRVLAGILRASLREAAQLDLPLPLVAC 194 Query: 191 RFFKEEK--KTVPNISLLKRDKPLF 213 E + P R+ Sbjct: 195 PPRAETQFTPKPPKAPCAYRNPGRL 219 >gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jostii RHA1] gi|110818358|gb|ABG93642.1| probable DNA polymerase III [Rhodococcus jostii RHA1] Length = 649 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 10/208 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+ET+GL S R++ + A+ L + R L P P + +H +T Sbjct: 70 RWVVVDVETSGLRSSTHRVLSVAALALREDGSVERELVTLLNPGC---DPGPVHIHNLTP 126 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P F + ++ + + + +AHNA FD GF++AE++R + + + TL Sbjct: 127 QRLAGAPRFEEVANDLLELLDGR--TLVAHNASFDYGFLDAEVRRAGM-TMPTRQRLCTL 183 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +++RR + L++L + + H A D+ +L++V+ + Sbjct: 184 ALSRRLEIDVPNHKLSTLAAHWKVR--QNRAHDAYDDALVLTEVFAHSASLAESLRLPLP 241 Query: 187 TNEDRFFKE-EKKTVPNISLLKRDKPLF 213 + VP + R+ Sbjct: 242 VVGCADRRAVYPDRVPRVESPWRNPGRL 269 >gi|89890222|ref|ZP_01201732.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] gi|89517137|gb|EAS19794.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7] Length = 466 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTG +R+ EI V + + ++ + + P L GI + Sbjct: 8 YCVVDIETTGNRMTGNRMTEICIVRMRGDTILDK-YSSLIDPE-VLIPDYITTLTGIDNA 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F+ + E +F ++ ++AHN FD + E +R++ D + + T+ Sbjct: 66 MVASAPVFADVAEEILNF--TKDYIFVAHNVNFDYNVLRNEFKRLHHDF--KRKKLCTVR 121 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++R P R L LC GI + +R H A D+ ++ K++ Sbjct: 122 LSRELIPGMRSYSLGKLCDDIGIPLINR--HRAEGDTDATVILFQKLIT 168 >gi|323339821|ref|ZP_08080090.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644] gi|323092694|gb|EFZ35297.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644] Length = 968 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 9/172 (5%) Query: 5 NKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N V D+E TG + +R+I+ V + +K TF + P RK + L Sbjct: 36 NLQTYAVVDLEMTGTNPNGSERLIQFSCVFT-EGNKIVNTFSTLINP-LRKIPEDVQNLT 93 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 ITD+ +K P+F + + + + ++AHN + D F+N+E +RI LD Sbjct: 94 NITDKDVKSAPTFDEVAGTIYALLS--DTVFVAHNIELDYRFLNSEFERIGFPKLDL-EG 150 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +A+ P+ + L L G H+ H A D+ + ++++I + Sbjct: 151 IDTVQLAQIAFPTLASYRLGDLAHFLG--FKHKHPHHADSDAFVTAELFILL 200 >gi|160937823|ref|ZP_02085182.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC BAA-613] gi|158439262|gb|EDP17015.1| hypothetical protein CLOBOL_02715 [Clostridium bolteae ATCC BAA-613] Length = 245 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 56/229 (24%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ETTGL+++ D+I EI A+ + D F + P GR+ L GITD+ Sbjct: 5 YIALDLETTGLEARLDKITEIAALRVEDGR-VEERFVTLVNP-GRQLGERITALTGITDD 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P + F N + HN FD F+ D IDTL Sbjct: 63 MVKDAPVIEDTIGDVVRFCG--NLPLLGHNILFDYAFLKRAAVNSGLDFEREG--IDTLG 118 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 I R P + +L C Y +S + H A D+ +Y MM + + Sbjct: 119 ICRLFMPEDVKRNLTCACSFY--EVSQSAAHRAQADAEAAHGLYQVMMARHGEEHPEAFA 176 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNAI 236 + +K +++ KR K + K + I + ++ + Sbjct: 177 AKPLIYKAKREQ----PATKRQKEYLHDLLKCHRIDVTVQIDAMSRSEV 221 >gi|193216948|ref|YP_002000190.1| DNA polymerase III PolC [Mycoplasma arthritidis 158L3-1] gi|193002271|gb|ACF07486.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1] Length = 1438 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 6/206 (2%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + +VFD+ETTGL + + IIE GA +++ + Q F+ P + P ++ Sbjct: 400 LSSQTYVVFDLETTGLSPRFNEIIEFGA-SIIENGIIKESHQFFIKPT-KPIPPSITEIT 457 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 ITD + + S + +D + +AHNAKFD+ + D Sbjct: 458 KITDNTVANGYSQEEGVRKIYDILKNRIC--VAHNAKFDINVCKENFLKYGLDN-SKIIG 514 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ID+L+IAR ++ L + K++ + + H A D+++L++V+I M++ ++ Sbjct: 515 IDSLAIARFLIDEAKSYRLEIVAKKFNVYYARNEAHRADYDANVLANVWILMILKLAREK 574 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKR 208 NE ++K R Sbjct: 575 NIRTANELAAVNDDKLFAKKFPREVR 600 >gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] Length = 382 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + RI E+G VE+ T + + P + +L GIT++ Sbjct: 15 IVFVDLETTGGSTSEHRITEVGVVEVGPTGVT--RWSSLIDPQ-QPIPSFIQQLTGITND 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+F SI ++ N ++AHNA FD GF+ +E +R ++ T+ Sbjct: 72 MVHGAPTFESIAPALYERLN--GKLFVAHNASFDRGFLRSEFRRAGLAFDPD--VLCTVR 127 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 128 LSRALFPGEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172 >gi|293390535|ref|ZP_06634869.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951069|gb|EFE01188.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D7S-1] Length = 217 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53 I K++ R +V D+ET GL++K D ++E+ A+ L ++ + P G Sbjct: 12 ILKHRFRGYLPVVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQPFEGA 71 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 PE+LK +GI D L+ S + SE + + Q + +AHNA FD GF Sbjct: 72 NIDPESLKFNGIDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFDQGF 131 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A QR+N ++P P DT +++ + L C+ I + H AL D Sbjct: 132 LMAAAQRMNAKRNPFHPFSTFDTATLSGFMF--GQTVLVKACQAAKIPFDSQQAHSALYD 189 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ M+ Q+ Sbjct: 190 TERTAELFCYMVNHLKQLG 208 >gi|298369304|ref|ZP_06980622.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sp. oral taxon 014 str. F0314] gi|298283307|gb|EFI24794.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sp. oral taxon 014 str. F0314] Length = 463 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 12/176 (6%) Query: 8 RKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + V D+E+TG + DRI E+ + + + ++ + P + L GIT Sbjct: 19 RPVAVVDLESTGGNFYRDRITEVAVLRFERGA--AKRYEWLVNPQ-QPIPKFVADLTGIT 75 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE + P FS I ++ A +AHN++FD F+ E +R D P+ + T Sbjct: 76 DEAVSGAPVFSDIAADLLPLL--HGAVVVAHNSRFDYTFLRHEFRRAGMDFAAPA--LCT 131 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK-MMVGGSQ 180 + ++RR +P R++L+S+ +R+GI + R H A+ D LSD + ++ G++ Sbjct: 132 VQLSRRLYPQFYRHNLDSIIERFGIAVESR--HRAMADVAALSDFLERSLVEKGAE 185 >gi|323701749|ref|ZP_08113420.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum nigrificans DSM 574] gi|323533285|gb|EGB23153.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum nigrificans DSM 574] Length = 930 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 12/168 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGLD +D IIEIG V+++D + FQ + P G + +L G+ D+ Sbjct: 5 FVALDLETTGLDCWSDDIIEIGMVKVIDGQE-RDFFQSLVRPGG-PLPVKIKQLTGLKDD 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F +I + F + + HN KFD F+ A P+ + DTL Sbjct: 63 DFQSAPWFQTIIPKILTFIG--DLPLVGHNIKFDRDFLAAAC-----GHQLPNDLYDTLE 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR PS + L LCK G+ ++ +H AL D+ + + +K++ Sbjct: 116 LARILQPSAPSHRLGELCKIAGVEVN--VEHRALDDARSSARLMLKLL 161 >gi|254247914|ref|ZP_04941235.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|124872690|gb|EAY64406.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] Length = 212 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL DR EI + L D +R FQ + GR+ + + L GIT++ Sbjct: 12 AVLDFETTGLSPNLGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPSDVVALTGITND 69 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S + E F + +AHNA FD F +EL + T+ Sbjct: 70 MIATAPPASEVMKEAAAFVGKH--AVVAHNAGFDKRFWQSELGMLGMSADHAFA--CTML 125 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR +P +R + L+SL + + + R H A++D+ + ++ ++ Sbjct: 126 VARRIYPDARSHRLSSLAEMLRLPQTGR-AHRAMVDAEMAGHLWCRL 171 >gi|296876164|ref|ZP_06900218.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit [Streptococcus parasanguinis ATCC 15912] gi|296432875|gb|EFH18668.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit [Streptococcus parasanguinis ATCC 15912] Length = 817 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 91/187 (48%), Gaps = 14/187 (7%) Query: 2 IRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 + + K + + D+E T G ++K II++G V + D T ++++ + P+ R Sbjct: 1 MTRQKRKYAIVDLEATSAGSNAK---IIQVGIVIIEDGRIT-QSYETDVNPHER-LDEHI 55 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L G+TD L+ P F+ + E ++ ++A ++AHN KFD + L + Sbjct: 56 KQLTGLTDARLRKAPEFAQVAKEIFELI--EDAVFVAHNVKFDANLLAEALFWEGFELTT 113 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 P IDT+ +++ +P+ R +L +L I + H H AL D+ + + +K+ Sbjct: 114 P--RIDTVELSQIFYPTLERYNLGALAAELEIELHH--AHSALADAMATAQLLLKLREKI 169 Query: 179 SQINFGF 185 + + G Sbjct: 170 ASLPRGL 176 >gi|238925353|ref|YP_002938870.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC 33656] gi|238877029|gb|ACR76736.1| DNA polymerase III, epsilon subunit [Eubacterium rectale ATCC 33656] Length = 245 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 10/178 (5%) Query: 1 MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + ++ V D+E TGL +KND+IIEIGA + + T + P Sbjct: 1 MSNIDNIKNYTVIDLEMTGLSAKNDKIIEIGAARVR-GGEIVDTISTLVNPKQH-IPQRV 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L GITD +++ +F + + N FD F+ + Sbjct: 59 QELTGITDSDVENAADMDEAVDNLLNFIGDD--IILGQNVTFDYSFLKQWAVNHKRTLSL 116 Query: 120 PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + DTL IAR+ P+ ++ L LC+ +G+ S ++ H AL D+ ++ K++ Sbjct: 117 NA--YDTLKIARKCLPAEQSKKLEDLCEYFGV--SRKNAHRALDDAIETKQIFEKLLA 170 >gi|119896359|ref|YP_931572.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] gi|119668772|emb|CAL92685.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 231 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTG+ + R EI V + + +R +Q + G E L GIT+ Sbjct: 31 YAVIDFETTGMAPEHGARPTEIAVVLVRNGCVIDR-YQSLMN-AGVHVPYEIQALTGITN 88 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P + + ++ DF +AHNA FD F +AEL R+ + + + +L Sbjct: 89 AMVRAAPPLAQVMAQAADFVGSH--ALVAHNAAFDRKFWDAELDRLGRR--READFVCSL 144 Query: 128 SIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++RR P S + L +L + G+ S R H AL D+ + ++ ++ Sbjct: 145 LLSRRVFPDSPNHKLGTLVRTLGLPASGR-FHRALADAEATAQLFARI 191 >gi|302384787|ref|YP_003820609.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] gi|302195415|gb|ADL02986.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum WM1] Length = 235 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ETTGLD K D+IIEIGAV+++ T FQ F+ P RK + L GI+D Sbjct: 5 YIAVDLETTGLDPKLDKIIEIGAVKVVKGQMT-EHFQTFINPF-RKLESRVIILTGISDR 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P + EF +F + + H+ FD F+ R IDTL Sbjct: 63 QLEASPGIGEVIGEFLEF--AEGLPVLGHHVIFDYSFLKRAAINEGYSF--ERRGIDTLK 118 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR P + +L + C +GI H AL D+ +Y +M Sbjct: 119 LARRFMPPEEKKNLGAACGYFGIE--QTMSHRALADASAAHGLYQEM 163 >gi|89898728|ref|YP_515838.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56] gi|89332100|dbj|BAE81693.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56] Length = 249 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 5/174 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + D E TGLD K DRIIE A + + + + + P+ R S E+ Sbjct: 1 MTLLKDTIFVCLDCEMTGLDVKKDRIIEFAA-KRFTFDNVIDSMETLINPD-RVISAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++H I+D LKD+P S +F + F E + + H+ FD+ + E +RI + L Sbjct: 59 RIHRISDAMLKDQPRISEVFPKIQAFLKEGD-YIVGHSVGFDLQVLTQEAERIGETFLSK 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IIDTL +A+ S N L +L + + H A+ D + +++ Sbjct: 118 YCIIDTLRLAKEYGDSPNNSLEALAVHFNVPYDGN--HRAMKDVEININIFKHF 169 >gi|15618565|ref|NP_224851.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae CWL029] gi|15836187|ref|NP_300711.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138] gi|16752385|ref|NP_444644.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39] gi|33242012|ref|NP_876953.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae TW-183] gi|4376954|gb|AAD18794.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029] gi|8163364|gb|AAF73628.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila pneumoniae AR39] gi|8979027|dbj|BAA98862.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138] gi|33236522|gb|AAP98610.1| DNA polymerase III [Chlamydophila pneumoniae TW-183] Length = 249 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 5/174 (2%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M D E TGLD K DRIIEI AV + + + + P R S E+ Sbjct: 1 MSLLKDTVFTCLDCEMTGLDVKKDRIIEIAAVRFT-FDSVISSIEFLINPE-RVVSAESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++H I++ L+D+P + +F + FF E + + H+ FD+ + E++RI + L Sbjct: 59 RVHHISNAMLRDQPKIAEVFPQIKAFFKEGD-YIVGHSVGFDLQVLAQEMERIGETFLSK 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IIDTL +A+ S N L SL + + H A+ D + +++ + Sbjct: 118 YTIIDTLRLAKEYGDSPNNSLESLAVHFNVPYDGN--HRAMKDVEININIFKHL 169 >gi|332995649|gb|AEF05704.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2] Length = 710 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 9/158 (5%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R +V DIETTG ++ +RI EIG V+++ + T+Q + P R+ +L Sbjct: 537 RDPNQPYVVVDIETTGGNNSYNRITEIGMVKIV-AGEVVDTYQTLINPQ-RRIPATITRL 594 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI+D+ + D P F + F +E A ++AHN FD GFI E R+ P Sbjct: 595 TGISDDMVADAPLFVEVAERIASFTDE--AVFVAHNVNFDYGFIKQEFARLELPFKRP-- 650 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159 + T+ R+ +P L +L + + I + H Sbjct: 651 KLCTVREMRKVNPGLPSYSLANLTRHFDIKMEQH--HR 686 >gi|23012539|ref|ZP_00052599.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Magnetospirillum magnetotacticum MS-1] Length = 218 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 26/206 (12%) Query: 8 RKIVFDIETTGLD----------SKNDR----IIEIGA---VELLDYSKTNRTFQVFLCP 50 R I D ETTG K R +IEIG V + KT +++Q + P Sbjct: 12 RIIAIDAETTGFQVPTPAEIRKMPKGLRLPGIVIEIGCLELVRSEEGWKTGKSWQRRIQP 71 Query: 51 NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 G S ++++HGI+ LK+ PSF I EF F + +AH+A+ ++ F+N E Sbjct: 72 GG-PVSKASVEVHGISPAELKNAPSFRDILDEFEAFIGQD--VLLAHSAENEMAFLNFEY 128 Query: 111 QRINKDPLDPS-----RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHR-SKHGALLDS 164 R + D + T ++R+ P L+ LC R + S R HGALLD+ Sbjct: 129 ARAGRCGFDEMIFSVDDFVCTQDLSRQFFPGVPGSLDVLCDRLWVDRSDRFEHHGALLDA 188 Query: 165 HLLSDVYIKMMVGGSQINFGFKTNED 190 L ++ ++KM G Q + + + D Sbjct: 189 ILTAEAFMKMAGGFVQDDTRYMSFGD 214 >gi|320547177|ref|ZP_08041471.1| DNA polymerase III [Streptococcus equinus ATCC 9812] gi|320448164|gb|EFW88913.1| DNA polymerase III [Streptococcus equinus ATCC 9812] Length = 827 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 88/175 (50%), Gaps = 10/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + V D+E TG + II++G V +++ K +T+Q + P+ + + Sbjct: 1 MMQVNSQKYAVVDLEATGAHAM-AEIIQVGIV-IIENKKIVKTYQTDVNPH-EPLTEHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + + ++ + + ++AHN KFD + +L + P Sbjct: 58 NLTGITDEQLAKAPDFSQVAQKIYNMIS--DCVFVAHNVKFDANLLAEKLFLEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++DT+ +++ +P+ + L L + ++ H A+ D++ + + +K+ Sbjct: 116 --LVDTVELSQVFYPTLEKYTLGHLADVLQLDLTD--AHTAISDAYATAQLLLKL 166 >gi|313672047|ref|YP_004050158.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312938803|gb|ADR17995.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 201 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 98/177 (55%), Gaps = 10/177 (5%) Query: 4 KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALK 61 +++ +VFD+ETTGL+ N D+IIE+GA ++ + F + P+ + + Sbjct: 12 LDEVSFVVFDLETTGLNPDNGDQIIEMGAFKIEEGFKLVRDPFHTMVKPDIFIPN----E 67 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT+ LK+ P + +F DF + + +AH A D+ F+ A ++ D Sbjct: 68 IHGITEMELKNAPDICTALYDFIDF--SRGSVLVAHKASKDIAFLRAAMREYLIDDSFDF 125 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHR-SKHGALLDSHLLSDVYIKMMV 176 +IDT+ ++R +P + ++L+ L +++ I+I+ + +H A+ D+ + +++KM+ Sbjct: 126 LVIDTIKFSQRLYPDFKYHNLDYLIEKHHISINSKFKRHRAIYDAEATAKIFLKMIR 182 >gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN] gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans PsJN] Length = 383 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + RI E+G VE+ + + P + +L GIT+ Sbjct: 15 IVFVDLETTGGSTAEHRITEVGVVEI--GPAGVSRWSSLVDPQ-QPIPSFIQQLTGITNA 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+F I E + N ++AHNA FD GF+ E +R+ ++ T+ Sbjct: 72 MVRGAPTFDVIAPELFKRLN--GKLFVAHNASFDRGFLRGEFRRVGLAFDPD--VLCTVR 127 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 128 LSRALFPAEKRHGLDALVERHALVPSDR--HRALADADLIWQFWQRL 172 >gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM 43183] gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM 43183] Length = 328 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 9/193 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D+ET+GL R++ + + L F L P P + +HG+T E L Sbjct: 18 VVDVETSGLRPDRHRVLSLAVLTLRPDGHLVEEFSTLLDPGC---DPGPVHIHGLTPERL 74 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P+F + + + + +AHNA FD F+ E R L + + TL++ Sbjct: 75 RGAPTFDRVAERVAELLSGR--VMVAHNAAFDYAFLAHEFGRAGLH-LPVEQRLCTLALG 131 Query: 131 RRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNE 189 RR P+ L++L YG+ H AL D+ +L+ V + + + Sbjct: 132 RRIGLPTPDLRLSTLAAHYGVP--QHRAHDALDDARVLAGVLRASLADAAALGVPLPLER 189 Query: 190 DRFFKEEKKTVPN 202 F + Sbjct: 190 CSFHSVLRNGAAR 202 >gi|241759673|ref|ZP_04757773.1| DNA polymerase III subunit [Neisseria flavescens SK114] gi|241319681|gb|EER56077.1| DNA polymerase III subunit [Neisseria flavescens SK114] Length = 463 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 11/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTG +S DRI E+ V T ++ + P R +L I DE Sbjct: 22 VVVDLETTGGNSYQDRITEVALVRFEQGRTT--HYEQLVNP-CRSIPEFVARLTEIHDET 78 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 +K+ P F+ I + Q A +AHN++FD F+ E RI+ D PS + T+ + Sbjct: 79 VKNAPVFADIAGDLLPLL--QGAVVVAHNSRFDYTFLRHEFARIHTDFAAPS--LCTVQL 134 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +RR +P ++ L+S+ +R GI ++R H A+ D L D Y+++ Sbjct: 135 SRRLYPEFYKHSLDSIIERTGIQTANR--HRAMTDVVALCD-YLEL 177 >gi|170017004|ref|YP_001727923.1| Rad3-related DNA helicase [Leuconostoc citreum KM20] gi|169803861|gb|ACA82479.1| Rad3-related DNA helicase [Leuconostoc citreum KM20] Length = 801 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 10/182 (5%) Query: 2 IRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + NK +V D+ETTG +K RII+IG + + + F+ F+ P + Sbjct: 1 MNANK-TFVVVDLETTGQSVAKGGRIIQIGMTFIKNRRIID-HFESFVNP-AQPIDRNIQ 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L I+ + +K+ P F I + + IAHN FD ++N E R L Sbjct: 58 QLTHISQKEVKNAPYFEEIAPVIQNLL--TDTVIIAHNVNFDYPYLNDEFARTGFPEL-T 114 Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + IDT+ +A+ P++ L L IT+++ H A D+H + +++ + Sbjct: 115 NAAIDTVQLAQILLPTAPGYRLLDLTTYLNITLNN--AHRANADAHATALLFLSLWQRAE 172 Query: 180 QI 181 Q+ Sbjct: 173 QL 174 >gi|28898888|ref|NP_798493.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633] gi|260879442|ref|ZP_05891797.1| ribonuclease T [Vibrio parahaemolyticus AN-5034] gi|29611937|sp|P46232|RNT_VIBPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|28807107|dbj|BAC60377.1| ribonuclease T [Vibrio parahaemolyticus RIMD 2210633] gi|308093530|gb|EFO43225.1| ribonuclease T [Vibrio parahaemolyticus AN-5034] gi|328474555|gb|EGF45360.1| ribonuclease T [Vibrio parahaemolyticus 10329] Length = 214 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 8 LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 EAL+ +GI D F L+ S E + ++ A +AHNA FD+ Sbjct: 68 ANLEKEALEFNGIRDPFSPLRGAVSEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDL 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+NA +R P P DT +++ + + L CK G+ +R H AL Sbjct: 128 SFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQKTAELFCGIVNKWKALG 206 >gi|226325409|ref|ZP_03800927.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758] gi|225206152|gb|EEG88506.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758] Length = 231 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD+ETTGLD + IIEIGA+++ D K F F+ P + SP L GIT+E Sbjct: 5 YVCFDLETTGLDPLYNEIIEIGALKVRDG-KVAERFMEFIHPQ-EEISPMITNLTGITNE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + ++ S+F +F ++ I HN FD F+ + + IDT Sbjct: 63 MVANARPADAVISDFLEFC--EDDVLIGHNVGFDYSFMKSGASNLGLTFEKFG--IDTFK 118 Query: 129 IA-RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IA R L+SLC+ Y I +++ H A D+ + +Y + Sbjct: 119 IAQRTLKSLPSKSLSSLCEYYQIE--NKAAHRAYYDALATAKLYQTL 163 >gi|295133359|ref|YP_003584035.1| exonuclease domain-containing protein [Zunongwangia profunda SM-A87] gi|294981374|gb|ADF51839.1| exonuclease domain-containing protein [Zunongwangia profunda SM-A87] Length = 475 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 9/171 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +++ + DIETTG K ++I EI + + + N + + P G + L I Sbjct: 3 EVKFAIIDIETTGGGIKGNKITEICVLVVQNGEVINE-YTSLVNP-GTEIPLYIETLTNI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+ L D P FS I S+ + ++ ++AHN FD I AE + +N + + Sbjct: 61 NDKMLVDAPKFSEIASKIQEI--TRDCIFVAHNVNFDYNIIKAEFESLNLSF--QRKRLC 116 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A++ P L +LC I I H +KH A D ++ + + Sbjct: 117 TVRLAKKLIPGLFSYSLGNLCT--SINIPHDNKHRAYGDCEATVTLFKRFI 165 >gi|107028837|ref|YP_625932.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116690004|ref|YP_835627.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|105898001|gb|ABF80959.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116648093|gb|ABK08734.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] Length = 212 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 11/178 (6%) Query: 1 MIRKNK--MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP 57 M N V D ETTGL DR EI + L + +R FQ + GR+ Sbjct: 1 MTPPNSTMQTVAVLDFETTGLSPNLGDRATEIAVILLRNGQVVDR-FQSLMN-AGRRIPS 58 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + + L GIT++ + P S + E F + +AHNA FD F +EL + Sbjct: 59 DVVALTGITNDMIATAPPASEVMKEAAAFVGKH--AVVAHNAGFDKRFWQSELGMLGMSA 116 Query: 118 LDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ +ARR +P +R + L+SL + + + R H A++D+ + ++ ++ Sbjct: 117 DHAFA--CTMLVARRIYPDARSHRLSSLAEMLRLPQTGR-AHRAMVDAEMAGHLWCRL 171 >gi|326335468|ref|ZP_08201655.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692234|gb|EGD34186.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 453 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI D ++ F + P +K L GI+++ Sbjct: 2 YAILDIETTGGKLNEESITEIAIYRF-DGNEVTDRFISLINPE-KKIDDFVAHLTGISNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P F + + +AHNA FD + E +R+ D I T+ Sbjct: 60 MVRNAPKFYEVAKRIIEI--TDGCIIVAHNAAFDYRILRLEFRRLGFDF--HRNTICTVE 115 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +++R P S L L + GI + R H A D+ ++ ++ +Q Sbjct: 116 MSQRLLPQESSYSLGKLTRSLGIPLLGR--HRANGDAMATVHLFKLLLTKDTQ 166 >gi|315221792|ref|ZP_07863704.1| DnaQ family exonuclease/DinG family helicase [Streptococcus anginosus F0211] gi|315189025|gb|EFU22728.1| DnaQ family exonuclease/DinG family helicase [Streptococcus anginosus F0211] Length = 819 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 93/174 (53%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + K + V D+E T S N +II++G V L++ + +T++ + P+ K P + Sbjct: 1 MTQEKRKYAVVDLEATSASS-NAKIIQVGIV-LIENGQIVKTYETDVNPH-EKLDPHIRQ 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L+ P FS + E ++ ++A ++AHN KFD + L + + P Sbjct: 58 LTGLTDKRLRKAPDFSQVAREIYELI--EDAIFVAHNVKFDANLLAEALFWEGFELVTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ P+ + +L LC++ I + H H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFFPTFEKYNLGILCEQLDIPLKH--AHTALADASATATLFLKI 165 >gi|323140812|ref|ZP_08075727.1| exonuclease, DNA polymerase III, epsilon subunit family [Phascolarctobacterium sp. YIT 12067] gi|322414694|gb|EFY05498.1| exonuclease, DNA polymerase III, epsilon subunit family [Phascolarctobacterium sp. YIT 12067] Length = 304 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 17/208 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTGL +ND I EI A++ + + + F + P +L GI D Sbjct: 22 YTVLDIETTGLSPQNDYITEISAIKYRNNRRVDE-FSSLVKPE-LSIPYYITRLTGINDA 79 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+ + F DF + +N FD+ FI L L + +D + Sbjct: 80 MVADAPAIDEVILSFMDFLADD--IIAGYNVAFDLSFIAENLAGHYAKRLA-NDYVDVMK 136 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ + P R ++ + + I + H AL+D ++ + Y K+ Sbjct: 137 LAQNELPFLGRYKQTAVAEYFNIATAG--AHRALVDCNICNGCYQKLKELA--------- 185 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215 D ++K + + +R +PL + Sbjct: 186 VADYHLPPKQKELAIVPSFRRLRPLADK 213 >gi|330816132|ref|YP_004359837.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] gi|327368525|gb|AEA59881.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3] Length = 203 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 10/195 (5%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 V D ETTGL + DR EI V L D +R +Q + GR+ + + L GI Sbjct: 2 QTVAVLDFETTGLSPAQGDRATEIAIVLLRDGEIVDR-YQSLMN-AGRRIPSDVVALTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T++ + P +S+ E F N +AHNA FD F +EL + Sbjct: 60 TNDMIASAPPVASVMREAAAFVG--NHPVVAHNAGFDRRFWQSELGLLGVPSAHEFA--C 115 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 TL +ARR +P + L+SL + + + R H A++D+ + S ++ ++ ++ +G Sbjct: 116 TLLVARRIYPQAPSHRLSSLVEMLSLPKTGR-AHRAMVDAEMASHLWCRLQSDMAR-TYG 173 Query: 185 FKTNEDRFFKEEKKT 199 + +KT Sbjct: 174 LSRIDHALMSRLQKT 188 >gi|251789330|ref|YP_003004051.1| ribonuclease T [Dickeya zeae Ech1591] gi|247537951|gb|ACT06572.1| ribonuclease T [Dickeya zeae Ech1591] Length = 226 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 88/216 (40%), Gaps = 22/216 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI AV L + + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDATLHFHIEPFEGAILRP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF EQ+ +AHNA FD F+ A Sbjct: 73 EALAFNGIDPTNPLRGAVSEYEALHEIFKSVRKGIKEQDCNRAIIVAHNATFDHSFLMAA 132 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L C I H AL D+ Sbjct: 133 AERCGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAADIPFDASQAHSALYDTERT 190 Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKEEKK 198 + ++ +++ +GG + G TN + ++ + Sbjct: 191 AQLFCELVNRWKRMGGWPLASGIDTNTEASLTDDDE 226 >gi|296133462|ref|YP_003640709.1| DnaQ family exonuclease/DinG family helicase [Thermincola sp. JR] gi|296032040|gb|ADG82808.1| DnaQ family exonuclease/DinG family helicase [Thermincola potens JR] Length = 994 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 11/174 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +K + DIETTGL+ + IIE+ AV + TFQ + P +K + +L Sbjct: 1 MSKNTFVAVDIETTGLNPADSEIIEVAAVRFAEGR-VLETFQSLVKPE-KKIPLKIQQLT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + D P+ + + +F ++ I HN FD+ F+ +R Sbjct: 59 GINESMVADAPACAEVTGMLAEFV--HDSIIIGHNIGFDLNFLQHY-----HPVFIRARY 111 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 DTL +AR P + L +L + I + + S H A D+ +V+ + Sbjct: 112 YDTLPLARLVWPKAHGYRLANLVEALKIQL-NGSPHRAFHDALAAKEVFCLALE 164 >gi|53728911|ref|ZP_00134639.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207670|ref|YP_001052895.1| ribonuclease T [Actinobacillus pleuropneumoniae L20] gi|165975638|ref|YP_001651231.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250752|ref|ZP_07336948.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251713|ref|ZP_07533617.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|166228560|sp|A3MYQ4|RNT_ACTP2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|126096462|gb|ABN73290.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875739|gb|ABY68787.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650422|gb|EFL80582.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860799|gb|EFM92808.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 218 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 21/205 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET GL+++ D ++E+ A+ + Y ++ + P G Sbjct: 12 KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANI 71 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +P++LK +GI D L+ + E + Q A +AHNA FD F+ Sbjct: 72 NPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQ 131 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A ++RIN +DP P + DT ++A + + L C+ I + H AL D+ Sbjct: 132 AAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKIPFDGKQAHSALYDTE 189 Query: 166 LLSDVYIKMMVGGSQINFGFKTNED 190 ++++ M+ + GF D Sbjct: 190 KTTELFCAMVNRLKDLG-GFPLVSD 213 >gi|227544617|ref|ZP_03974666.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri CF48-3A] gi|300910253|ref|ZP_07127713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri SD2112] gi|227185400|gb|EEI65471.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri CF48-3A] gi|300892901|gb|EFK86261.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus reuteri SD2112] Length = 954 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 101/233 (43%), Gaps = 21/233 (9%) Query: 1 MIRKNKMR----------KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLC 49 M +++ R V D+ETTG + DRII+IG V + D + F+ + Sbjct: 1 MTQRSSQRTKKRDKKAPIYSVVDLETTGTNVNHGDRIIQIGCVLVQDG-EIMNHFETKIN 59 Query: 50 PNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAE 109 P K ++L GI D+ ++ P F I + E ++AHN FD F+NAE Sbjct: 60 P-REKIPRSIVQLTGIEDKDVRKAPLFEDIAGTIYSLLAE--TTFVAHNVNFDFPFLNAE 116 Query: 110 LQRINKDPLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168 L+R L IDT+++++ P++++ L L I H H A+ D+ + Sbjct: 117 LERAGYPSLSI-PAIDTVTLSQILLPTAKSFRLRDLTSSLHIE--HDHPHSAVSDAEATA 173 Query: 169 DVYIKMMVGGSQIN-FGFKTNEDRFFKEEKKTVPNI-SLLKRDKPLFTRITKE 219 D+ ++ ++ + ++T + L+R + +++E Sbjct: 174 DLLNDLLKRVQELPTLTLEKITQLKLNLPQQTAGVFDAELQRRRKSPQPLSEE 226 >gi|194334228|ref|YP_002016088.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271] gi|194312046|gb|ACF46441.1| DNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271] Length = 180 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R I D+ETTGL + DR+IE+ AV +++ F + N K+HGIT Sbjct: 12 RVIAVDVETTGLSPRRGDRVIEVAAVAIVNG-VIEEHFCCLINVN-APIPTVVQKIHGIT 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L + +++ EF F IAHNA FD+ FI EL+ + L+ S+ T Sbjct: 70 PELLAGEKPPEAVWPEFLKFIGSN--ILIAHNAPFDISFIRNELRFLGLSLLNGSQ--CT 125 Query: 127 LSIARRKHPSSR-NDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKM 174 L+ +R+K P + + L ++ + G H A D+ L + ++ + Sbjct: 126 LAFSRKKFPQLKNHKLENVARHVLGGMPKGIKLHRASGDALLTAMIWQVI 175 >gi|257094042|ref|YP_003167683.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046566|gb|ACV35754.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 484 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 88/164 (53%), Gaps = 9/164 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ET+G + +DR+IE+G VE+ R + V + P SP +L GI D Sbjct: 13 VFVDLETSGANFASDRVIEVGLVEVDADG--VREWSVLVNPE-APISPFITRLTGIDDAM 69 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P+F + + +AHNA+FD GF+ E +R+ + P+ + T+ + Sbjct: 70 VGSAPTFRQLAPT--LLDRLRGRLLVAHNARFDYGFLQCEFKRLGVEFRTPT--LCTVKL 125 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +R+ P R++L++L R+G+ ++ ++H AL D+ +L +++ Sbjct: 126 SRKLFPEHHRHNLDALVTRHGLKVAG-NRHRALADARILWELWQ 168 >gi|190149453|ref|YP_001967978.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307260640|ref|ZP_07542332.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262772|ref|ZP_07544399.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914584|gb|ACE60836.1| DNA polymerase III, epsilon subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306869717|gb|EFN01502.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871917|gb|EFN03634.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 218 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 21/205 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET GL+++ D ++E+ A+ + Y ++ + P G Sbjct: 12 KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANI 71 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +P++LK +GI D L+ + E + Q A +AHNA FD F+ Sbjct: 72 NPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQ 131 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A ++RIN +DP P + DT ++A + + L C+ I + H AL D+ Sbjct: 132 AAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKIPFDDKQAHSALYDTE 189 Query: 166 LLSDVYIKMMVGGSQINFGFKTNED 190 ++++ M+ + GF D Sbjct: 190 KTTELFCAMVNRLKDLG-GFPLVSD 213 >gi|262274550|ref|ZP_06052361.1| ribonuclease T [Grimontia hollisae CIP 101886] gi|262221113|gb|EEY72427.1| ribonuclease T [Grimontia hollisae CIP 101886] Length = 223 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 18/190 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G + + D ++EI AV L + ++T + P G EAL + Sbjct: 19 PVVIDVETAGFNPQTDALLEICAVTLKMDEDGWLSPDKTIHFHVTPFEGANLEQEALAFN 78 Query: 64 GITDEF--LKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQR-- 112 GI D F L+ E + Q A +AHNA FD F+ A +R Sbjct: 79 GIKDPFSPLRGAVDEEHALKEIFKLIRKEQKASGCQRAIMVAHNANFDHSFVMAASERAN 138 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + ++P P DT +++ + L CK GI + H AL D+ ++++ Sbjct: 139 LKRNPFHPFATFDTAALSGLAL--GQTVLAKACKTAGIAFDNNEAHSALYDTERTAELFC 196 Query: 173 KMMVGGSQIN 182 +++ ++ Sbjct: 197 EIVNRWKKLG 206 >gi|119476123|ref|ZP_01616475.1| exonuclease [marine gamma proteobacterium HTCC2143] gi|119450750|gb|EAW31984.1| exonuclease [marine gamma proteobacterium HTCC2143] Length = 216 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 9/169 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL DR IEIGAV L +R FQ + P G++ S GIT+ Sbjct: 7 VVLDFETTGLSPDAGDRAIEIGAVRLESGEVVDR-FQALMNP-GQRVSGFIEDHTGITNT 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + + + +F DF N +AHNA FD F++AEL RI++ +L Sbjct: 65 MLANSDHSAKVMHQFADFIEGHN--LVAHNASFDKRFLDAELARISRSY--SGDFSCSLL 120 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +RR + + N L +L K GI S H AL DS + +++ ++ Sbjct: 121 ASRRIYQQAPNHQLGTLIKYTGIA-STGDFHRALYDSEMTVKLWLHLLA 168 >gi|257464923|ref|ZP_05629294.1| ribonuclease T [Actinobacillus minor 202] gi|257450583|gb|EEV24626.1| ribonuclease T [Actinobacillus minor 202] Length = 216 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53 + KN+ R ++ D+ET GL+++ D ++EI A+ + Y ++ + P G Sbjct: 10 LLKNRFRGYLPVIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPFEGA 69 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 + ++LK +GI D L+ + E + Q A +AHNA FD GF Sbjct: 70 NINQDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRKAMKDQGCQRAVIVAHNAAFDQGF 129 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A +RIN +DP P + DT ++A + + L C+ I + H AL D Sbjct: 130 LQAAAKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMANIAFDGKQAHSALYD 187 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ M+ + Sbjct: 188 TEKTTELFCTMVNRLKDLG 206 >gi|271500216|ref|YP_003333241.1| ribonuclease T [Dickeya dadantii Ech586] gi|270343771|gb|ACZ76536.1| ribonuclease T [Dickeya dadantii Ech586] Length = 226 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 22/216 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI AV L + + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDDTLHFHIEPFEGAILRP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF +QN +AHNA FD F+ A Sbjct: 73 EALAFNGIDPSNPLRGAVSEYDALHDIFKAVRKGIKDQNCNRAIIVAHNATFDHSFLMAA 132 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L C I H AL D+ Sbjct: 133 AERCGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAAEIPFDASQAHSALYDTERT 190 Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKEEKK 198 + ++ +++ +GG + ED ++ Sbjct: 191 AQLFCELVNRWKRMGGWPLAGAVGDTEDAPLAVDEG 226 >gi|213691637|ref|YP_002322223.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523098|gb|ACJ51845.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 211 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 84/213 (39%), Gaps = 17/213 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + I EIGAV + ++ FQ + P R + L GITD Sbjct: 10 YVALDLETTGFYPNSCAITEIGAVRVRKGHIVDQ-FQQLVNP-LRPIPRQITTLTGITDA 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNA-----EWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 + D + F + A + HN FD+ F++ + I Sbjct: 68 MVADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFA-CAD 126 Query: 124 IDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 DT+ I+R P+ R+ L L R+GI + +H AL D+ + M + Sbjct: 127 YDTMQISRALFPAQRHHRLADLIVRFGI--ADNEEHRALSDAIQTQQCFEWM------RH 178 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 + + +E + ++ N + + + + R Sbjct: 179 YVTEHHESEAIRWKQAPARNSTEILHQQLVVKR 211 >gi|91216470|ref|ZP_01253436.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC 700755] gi|91185264|gb|EAS71641.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC 700755] Length = 454 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE+TG + I EI + D ++ F + P RK + L GI +E Sbjct: 2 YAILDIESTGGKYNEEGITEIAIYKF-DGNEIVDQFISLINPE-RKIQSFVVGLTGINNE 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F I + + +AHNAKFD + E R+ L + + T+ Sbjct: 60 MLHQAPKFYEIAKRIIEI--TEGCTIVAHNAKFDYRMLKLEFDRLGY--LYERKTLCTVK 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++++ P L L K+ GI I+ R H A D+ ++ ++ Sbjct: 116 LSKKLLPDFESYSLGKLVKKLGIPITDR--HRASGDALATVKLFKLLLE 162 >gi|313818253|gb|EFS55967.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA2] Length = 597 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 27 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 83 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 84 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 140 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 141 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 196 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 197 GNLGVTTLEDLL 208 >gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces hygroscopicus ATCC 53653] gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces himastatinicus ATCC 53653] Length = 335 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 10/201 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +++DRI+ +L + + P P + +HG+T E Sbjct: 26 YAVVDVETTGL-ARDDRIVSAAVYQLDARGAVQDRWYTLVNPQR---DPGPVWIHGLTRE 81 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P F I + F + + + +AHNA FD I E R + R + T++ Sbjct: 82 TLSDAPLFPDIATAFAERLDGR--VLVAHNAAFDWSMIAREFARSKTEAPVRQR-LCTIA 138 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +++ P + + L +L YG+ H AL D+ +L++ + + ++ Sbjct: 139 LSKELGLPLANHKLETLAAHYGVV--QERAHHALDDARVLAETFRPSLHRAAEAGVRLPL 196 Query: 188 NEDRFFKEEKKTVPNISLLKR 208 + E +R Sbjct: 197 LACQPLTEWSDPPSRGIGAQR 217 >gi|90409038|ref|ZP_01217165.1| ribonuclease T [Psychromonas sp. CNPT3] gi|90309845|gb|EAS38003.1| ribonuclease T [Psychromonas sp. CNPT3] Length = 204 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNSPEALKLH 63 ++ DIET+GL+S+ D I+EI A+ + +T + P G P+AL+ Sbjct: 14 PVIIDIETSGLNSQTDAILEIAAIFPAMDEQGYLYSAQTIHFNVQPFEGANMDPKALEFT 73 Query: 64 GITD-EFLKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRIN- 114 GI L+ + +E + + + +AHNA FD GFIN +R N Sbjct: 74 GIDPFNPLRGAIDEKEVLTEIFKLVRKHQKINDCNRSILVAHNAAFDQGFINKASERCNF 133 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT S+A + L C++ I ++ H AL D+ + +D++ Sbjct: 134 KRIPFHPFVCFDTASMAGLML--GQTVLAKACEQANIDYNNEEAHSALYDTQVTADLFFY 191 Query: 174 MMVGGSQIN 182 M+ + Sbjct: 192 MVNKLKALG 200 >gi|256851162|ref|ZP_05556551.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN] gi|260660586|ref|ZP_05861501.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN] gi|282934628|ref|ZP_06339871.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] gi|297206027|ref|ZP_06923422.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16] gi|256616224|gb|EEU21412.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN] gi|260548308|gb|EEX24283.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN] gi|281301203|gb|EFA93504.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] gi|297149153|gb|EFH29451.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16] Length = 936 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 14/227 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG DRII+ G + + +T+ + P L GI Sbjct: 10 FAVVDLETTGTRRGQDRIIQFGCAIIKNRQII-KTYSFLINPK-ADIPQAVQNLTGIKPA 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P F + ++ D Q+ ++AHN FD+ F+NAEL L +R IDT+ Sbjct: 68 DVVNQPVFKNFATQIEDIL--QDTVFVAHNINFDLPFLNAELAANGFPKL-RNRAIDTVE 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG--- 184 +++ P+ L+ L + + + H + H A D++ + + +K++ + Sbjct: 125 LSKIAFPTLPSYRLSDLT--HSLNLKHTNPHQADSDAYATASLLLKILDKLESLPQSTLN 182 Query: 185 -FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 + ++ + IS R + ++K+ L H ++ Sbjct: 183 TLTSLSKGLLRDTQFIFKEISEFTRQEKRP--LSKKYLQIHSLVLKK 227 >gi|294668271|ref|ZP_06733376.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309790|gb|EFE51033.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 493 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 11/173 (6%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + ++ D+E TG + DRI EI + +++ + P R L GI Sbjct: 18 RRPVVIIDLEATGGNPYTDRITEIAFLRFDGNG--VSSYRQLVNPQ-RNIPEFVSNLTGI 74 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 DE + D P F+ + + + +AHN+KFD F+ E R P+ + Sbjct: 75 DDEMVADAPPFADLSDDLLHRL--RGTLLLAHNSKFDYTFLRHEFSRCRLSYAAPT--LC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 T+ ++RR +P +++L+S+ +R+ I +S R H A+ D L+D Y+++ Sbjct: 131 TVQLSRRLYPQFFKHNLDSIIERHQIAVSSR--HRAMNDVLALAD-YLELTAA 180 >gi|314960311|gb|EFT04413.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA2] Length = 604 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 34 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 90 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 91 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 147 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 148 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 203 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 204 GNLGVTTLEDLL 215 >gi|307253947|ref|ZP_07535799.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256208|ref|ZP_07537995.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258402|ref|ZP_07540143.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306863151|gb|EFM95093.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865389|gb|EFM97285.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867586|gb|EFM99433.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 218 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 21/205 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET GL+++ D ++E+ A+ + Y ++ + P G Sbjct: 12 KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANI 71 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +P++LK +GI D L+ + E + Q A +AHNA FD F+ Sbjct: 72 NPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQAFVQ 131 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A ++RIN +DP P + DT ++A + L C+ I + H AL D+ Sbjct: 132 AAVKRINAKRDPFHPFAMFDTATLAGFMF--GQTVLVKACQMAKIPFDGKQAHSALYDTE 189 Query: 166 LLSDVYIKMMVGGSQINFGFKTNED 190 ++++ M+ + GF D Sbjct: 190 KTTELFCAMVNRLKDLG-GFPLVSD 213 >gi|303252005|ref|ZP_07338176.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247168|ref|ZP_07529219.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649435|gb|EFL79620.1| ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856306|gb|EFM88458.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 218 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 21/205 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET GL+++ D ++E+ A+ + Y ++ + P G Sbjct: 12 KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANI 71 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +P++LK +GI D L+ + E + Q A +AHNA FD F+ Sbjct: 72 NPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQ 131 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A ++RIN +DP P + DT ++A + + L C+ I + H AL D+ Sbjct: 132 AAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKIPFDGKQAHSALYDTE 189 Query: 166 LLSDVYIKMMVGGSQINFGFKTNED 190 ++++ M+ + GF D Sbjct: 190 KTTELFCAMVNRLKDLG-GFPLVSD 213 >gi|149190366|ref|ZP_01868638.1| ribonuclease T [Vibrio shilonii AK1] gi|148835745|gb|EDL52710.1| ribonuclease T [Vibrio shilonii AK1] Length = 241 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NG 52 + K + R +V D+ET G ++K D ++EI A+ L + + P G Sbjct: 32 LTLKKRFRGYFPVVVDVETAGFNAKTDALLEICAITLTMDDQGNLQPASVLHFHIEPFEG 91 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 EAL+ GI D F L+ S E + ++ A +AHNA FD Sbjct: 92 ANLEKEALEFTGIRDPFSPLRGAVSEQEALKEIYKVIRKEQKQHDCSRAIMVAHNANFDH 151 Query: 104 GFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F++A +R + + P P DT +++ + + L CK G+ +R H AL Sbjct: 152 SFVSAANERAKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNREAHSAL 209 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ +++ + Sbjct: 210 YDTQKTAELFCRIVNKWKALG 230 >gi|315080369|gb|EFT52345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL078PA1] Length = 597 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 27 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 83 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 84 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 140 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 141 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 196 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 197 GNLGVTTLEDLL 208 >gi|282856872|ref|ZP_06266130.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens W5455] gi|282585290|gb|EFB90600.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens W5455] Length = 196 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 8/190 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 DIETTGL I+EI A+++ + R+FQ+ + P GR + +HGI D Sbjct: 10 FTALDIETTGLSPAFCGIVEIAALKIFPDG-SQRSFQMLVDP-GRPIPRDVSAIHGIDDA 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +PS + + F + + HNA FD+ F+N ++R P+ + DTL Sbjct: 68 MVRGQPSAADAVAALVSFVGP--SPLVLHNAPFDMSFLNPVVRRQRLQWDSPA-VFDTLR 124 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R+ P L SL + + H AL D ++ +++ ++ F Sbjct: 125 LSRQAFPGLNSYSLESLSRFF--DFDAGGHHRALADCRYCVQLFARILRKIRGLDMDFAA 182 Query: 188 NEDRFFKEEK 197 + + Sbjct: 183 FAREYASSAR 192 >gi|205373870|ref|ZP_03226672.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus coahuilensis m4-4] Length = 194 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +V D+ETTG K DRII++ A L+++ + F FL PN + +L GIT Sbjct: 5 RYVVVDLETTGNSPKRGDRIIQLSAC-LIEHGEIVEQFTSFLNPN-KTIPIFIEELTGIT 62 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + D P+F I + N ++ ++AHN FD+ F+ EL I+DT Sbjct: 63 QPMVDDAPNFEQIAPKLISMLN--DSVFVAHNVTFDLSFLQWELHAAGYKTF-QGPILDT 119 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLD 163 + +A+ P+S L L +++ + H H A D Sbjct: 120 VELAKICFPTSNSYKLGDLSEKFNLL--HERPHQADSD 155 >gi|182683721|ref|YP_001835468.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14] gi|182629055|gb|ACB90003.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14] Length = 816 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|296160037|ref|ZP_06842857.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] gi|295889783|gb|EFG69581.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] Length = 383 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + RI E+G VE+ + + P + +L GIT+ Sbjct: 15 IVFVDLETTGGSTAEHRITEVGVVEV--GPAGVSRWSSLVDPQ-QPIPSFIQQLTGITNA 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+F +I ++ N ++AHNA FD GF+ E +R+ ++ T+ Sbjct: 72 MVRGAPTFEAIAPALFERLN--GKLFVAHNASFDRGFLRGEFRRVGLAFDPD--VLCTVR 127 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 128 LSRALFPAEKRHGLDALVERHTLVPSDR--HRALADADLIWQFWQRL 172 >gi|307244994|ref|ZP_07527091.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854159|gb|EFM86367.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 218 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 21/205 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET GL+++ D ++E+ A+ + Y ++ + P G Sbjct: 12 KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANI 71 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +P++LK +GI D L+ + E + Q A +AHNA FD F+ Sbjct: 72 NPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQAFVQ 131 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A ++RIN +DP P + DT ++A + L C+ I + H AL D+ Sbjct: 132 AAVKRINAKRDPFHPFAMFDTATLAGFMF--GQTVLVKACQMAKIPFDGKQAHSALYDTE 189 Query: 166 LLSDVYIKMMVGGSQINFGFKTNED 190 ++++ M+ + GF D Sbjct: 190 KTTELFCAMVNRLKGLG-GFPLVSD 213 >gi|15902755|ref|NP_358305.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae R6] gi|116516668|ref|YP_816199.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae D39] gi|15458302|gb|AAK99515.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6] gi|116077244|gb|ABJ54964.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae D39] Length = 816 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMAQLPKGL 176 >gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] Length = 395 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + RI E+G VE+ + + P + +L GIT+ Sbjct: 27 IVFVDLETTGGSTAEHRITEVGVVEV--GPAGVSRWSSLVDPQ-QPIPSFIQQLTGITNA 83 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+F +I ++ N ++AHNA FD GF+ E +R ++ T+ Sbjct: 84 MVRGAPTFEAIAPALFERLN--GKLFVAHNASFDRGFLRGEFRRAGLAFDPD--VLCTVR 139 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R P R+ L++L +R+ + S R H AL D+ L+ + ++ Sbjct: 140 LSRALFPAEKRHGLDALVERHTLVPSDR--HRALADADLIWQFWQRL 184 >gi|225376763|ref|ZP_03753984.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM 16841] gi|225211389|gb|EEG93743.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM 16841] Length = 241 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 87/203 (42%), Gaps = 12/203 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+E TGL++K DRI+E GA + T TF + P RK + + L GIT+E Sbjct: 5 YVVIDLEMTGLNAKTDRILEAGAARVRGNVVTA-TFSEIINPK-RKLPEKVVSLTGITNE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + F+DF E + N FD F+ + + +DTL Sbjct: 63 MAAQGKETDATLAAFFDFIGED--ILVGQNVIFDYSFLKQWAVNHKRTFERNA--VDTLK 118 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY---IKMMVGGSQINFG 184 +AR+ P + DL SLC +GI H H AL D ++ KM G+ F Sbjct: 119 LARKFLPQEQKKDLASLCSYFGIERVH--AHRALDDVMETQQIFEQMQKMYEAGATGAFR 176 Query: 185 FKTNEDRFFKEEKKTVPNISLLK 207 + + K+ T I LK Sbjct: 177 PYPLQYKVKKQSPATPQQIKYLK 199 >gi|83312383|ref|YP_422647.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] gi|82947224|dbj|BAE52088.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 215 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 30/218 (13%) Query: 1 MIRKNKM----RKIVFDIETTGLD-SKNDRI-------------IEIGA---VELLDYSK 39 M+ + + R + D ETTG I IEIG V + K Sbjct: 1 MLSLDDLATTSRIVAIDAETTGFKVPTPAEIKKMPKGLRLPGVVIEIGCLELVRGDEGWK 60 Query: 40 TNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA 99 T ++Q L P G S ++ +HGI+ LK PSF + +F F + +AH+A Sbjct: 61 TGESWQRRLQPGG-PISKASIDVHGISPAELKTAPSFRDVLDDFEAFIGQD--ALLAHSA 117 Query: 100 KFDVGFINAELQRINKDPLDP-----SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154 + ++ F+N E R + D + T ++R+ P L+ LC R + S Sbjct: 118 ENEMEFLNFEYARAGRCGFDEMIFGDGDFVCTQELSRQFFPGVPGSLDVLCDRLWVDRSD 177 Query: 155 R-SKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191 R HGALLD+ L ++ ++KM G Q + + + D+ Sbjct: 178 RFEHHGALLDAILTAEAFMKMAGGFVQDDTRYMSFGDQ 215 >gi|325955054|ref|YP_004238714.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922] gi|323437672|gb|ADX68136.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922] Length = 453 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 65/167 (38%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE TG + II+I D T F + P RK P KL ITD+ Sbjct: 2 FAILDIEATGGKVGEESIIDIAIFRY-DGQTTVDQFISLVNP-MRKIDPFVQKLTNITDK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F I + ++ + HN KFD + E +++ D IDT Sbjct: 60 MVLTAPKFHEIAKRIVEI--TEDCILVGHNVKFDYRMLRQEFKKLGYDYEKD--WIDTFE 115 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 A++ P L L GI I+ R H A D+ ++ + Sbjct: 116 FAQKLIPNMESYSLGKLTNALGIPITDR--HRASGDARATLKLFQLL 160 >gi|76788222|ref|YP_329936.1| DNA polymerase III epsilon subunit family exonuclease [Streptococcus agalactiae A909] gi|77412263|ref|ZP_00788580.1| Unknown [Streptococcus agalactiae CJB111] gi|77414710|ref|ZP_00790841.1| Unknown [Streptococcus agalactiae 515] gi|76563279|gb|ABA45863.1| exonuclease, DNA polymerase III, epsilon subunit family [Streptococcus agalactiae A909] gi|77159237|gb|EAO70417.1| Unknown [Streptococcus agalactiae 515] gi|77161697|gb|EAO72691.1| Unknown [Streptococcus agalactiae CJB111] Length = 604 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 94/173 (54%), Gaps = 10/173 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K R I FDIETTGL+S+ DRI+E+GAV + K +++ + S + +++ I Sbjct: 50 KNRFIAFDIETTGLNSQQDRIVEVGAVLFENG-KVVDSYESLVN-AKVNISADVTRINNI 107 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 T+ +K+ PS + ++ E +F + AHNAKFD+GF+ L R+ + + Sbjct: 108 TNRMIKNAPSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLGYN--GEIK 165 Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DTLS++R+ RN N++ + + + +++ H A D+ + ++ K+ Sbjct: 166 YLDTLSLSRKNVKGLRNYKQNTVAEYFNLQ--NKNSHRAKSDAIICGNILTKL 216 >gi|327452827|gb|EGE99481.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL092PA1] Length = 587 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 17 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 73 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 74 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 130 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 131 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 186 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 187 GNLGVTTLEDLL 198 >gi|313809712|gb|EFS47433.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA1] gi|314915265|gb|EFS79096.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA4] gi|314978176|gb|EFT22270.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA2] gi|314983574|gb|EFT27666.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA1] gi|315098227|gb|EFT70203.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA2] gi|327330574|gb|EGE72320.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL097PA1] gi|327442625|gb|EGE89279.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA2] gi|327445348|gb|EGE92002.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA2] Length = 597 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 27 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 83 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 84 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 140 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 141 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 196 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 197 GNLGVTTLEDLL 208 >gi|321309652|ref|YP_004191981.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str. Langford 1] gi|319801496|emb|CBY92142.1| DNA polymerase III, alpha subunit, Gram-positive type (fragment) [Mycoplasma haemofelis str. Langford 1] Length = 216 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 13/199 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH-GITD 67 V DIETTG K I EI + + + ++ + F+ R P ITD Sbjct: 20 YCVLDIETTGTSYKTSEITEISIHKYRNGKRVDK-YHSFVK-ISRPLPPFIRIFTPHITD 77 Query: 68 EFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIID 125 E L ++ + E DF + + +AHN FD+ F+ A + PL + IID Sbjct: 78 ELLAREGKDLDVVIKEVKDF--TKGSILVAHNGVTFDLLFLKAACIKYGLKPLS-NPIID 134 Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF- 183 TL ++R P+ R + L +C+R + H A D +L V+ VG +I Sbjct: 135 TLRLSRSTFPNERYHTLGDVCRRMQVNYDEDRAHSADYDVDVLWQVFWNFAVGLKKIGVN 194 Query: 184 ---GFKTNEDRFFKEEKKT 199 G + + F KKT Sbjct: 195 LEDGLQEANEAIFNMFKKT 213 >gi|322515227|ref|ZP_08068225.1| ribonuclease T [Actinobacillus ureae ATCC 25976] gi|322118732|gb|EFX90938.1| ribonuclease T [Actinobacillus ureae ATCC 25976] Length = 218 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 21/207 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53 + KN+ R ++ D+ET GL+++ D ++E+ A+ + Y ++ + P G Sbjct: 10 LLKNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGA 69 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 +P++LK +GI D L+ + E + Q A +AHNA FD F Sbjct: 70 NINPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKDQGCQRAVIVAHNATFDQAF 129 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A ++RIN +DP P + DT ++A + + L C+ I+ + H AL D Sbjct: 130 VQAAVKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQMAKISFDGKQAHSALYD 187 Query: 164 SHLLSDVYIKMMVGGSQINFGFKTNED 190 + ++++ M+ + GF D Sbjct: 188 TEKTTELFCAMVNRLKDLG-GFPLVSD 213 >gi|315085964|gb|EFT57940.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA3] Length = 584 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 14 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 70 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 71 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 127 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 128 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 183 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 184 GNLGVTTLEDLL 195 >gi|497127|gb|AAA21572.1| RNase T [Vibrio parahaemolyticus] Length = 214 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 8 LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 EAL+ +GI D F L+ S E + ++ A +AHNA FD+ Sbjct: 68 ANLEKEALEFNGIRDPFSPLRGAISEQEALKEIYKLIRKEQKASDCSRAIMVAHNAAFDL 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+NA +R P P DT +++ + + L CK G+ +R H AL Sbjct: 128 SFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQKTAELFCGIVNKWKALG 206 >gi|289550764|ref|YP_003471668.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis HKU09-01] gi|289180296|gb|ADC87541.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis HKU09-01] Length = 893 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 8/166 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + K T+ + + P L I ++ Sbjct: 6 YAVVDLETTGNQLDYDEIIQIG-ITFVRGQKIVGTYHSMIN-TDVEIPPFIQALTSIEED 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK P F + + + +++ ++AHN FD+ FI +R N P ++IDT+ Sbjct: 64 MLKQAPYFHEVAEDVYKQL--KDSVFVAHNVSFDLTFIKKAFKR-NHIHFQPKKVIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + P L+ L + + I + + H A D+ + + IK Sbjct: 121 LFKIAFPTDKSYQLSELAEAHHIPLDN--AHRADEDATTTAKLMIK 164 >gi|309790215|ref|ZP_07684787.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] gi|308227800|gb|EFO81456.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] Length = 935 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 15/208 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL + D IIE AV+ D R F + P + + +L GIT + Sbjct: 6 FVALDVETTGLQAGIDEIIEFAAVKFRDGEILER-FSQLIAP-RQPLPLKITRLTGITAQ 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P F+ + + F + H+ FD+G + A+ + DT Sbjct: 64 DLADAPHFNDVGGKIAGFIKS--YPLVGHSINFDLGMLRAQGMNF------TQPVYDTFD 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A P + L ++ R GI H H AL D+ + + V+ ++ G + G + Sbjct: 116 LATILMPQIAVYKLGAIADRLGIP--HPDDHRALNDAEVTAHVFTHLL--GVIESLGLED 171 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTR 215 ++ E+ P L R Sbjct: 172 LKEIVRLSEQVMFPMRDLFAHALEKRAR 199 >gi|325068629|ref|ZP_08127302.1| hypothetical protein AoriK_12441 [Actinomyces oris K20] Length = 204 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 10/187 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 ++ +V D+ETTG + EIGAV++ + F + P G + Sbjct: 15 TPLERVTFVVVDLETTGGAPGARSLTEIGAVKVR-GGQVLAEFSTLVNP-GVAIPAQITL 72 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L GIT+ + P + F D+ + +AHNA+FDVG + ++ + + Sbjct: 73 LTGITNAMVAGAPGVRTCVEAFLDWADLLADDVVLVAHNARFDVGHLRGAAAALDLEWPE 132 Query: 120 PSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 P R++DTL++AR+ + L +L G I R H AL D+ DV + Sbjct: 133 P-RVLDTLALARKAWTRSEVPNHKLGTLAAFVGSQI--RPTHRALDDARATVDVLHAALE 189 Query: 177 GGSQINF 183 + + Sbjct: 190 VMAPLGV 196 >gi|256847331|ref|ZP_05552777.1| helicase [Lactobacillus coleohominis 101-4-CHN] gi|256715995|gb|EEU30970.1| helicase [Lactobacillus coleohominis 101-4-CHN] Length = 950 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 12/186 (6%) Query: 1 MIRKNKMR---KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNS 56 M K + R V D+ETTG K DRII++G V + D N+ F+ + P K Sbjct: 5 MKTKQRKRGPIYSVVDLETTGTSVKSGDRIIQVGLVMIQDGKIINQ-FETRINP-LMKIP 62 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 +L GITD+ + P I + ++AHN FD FIN EL R+ +D Sbjct: 63 RSVQQLTGITDKDVSKAPLLEDIAPTLESLLS--GTIFVAHNVNFDFPFINHELTRVGRD 120 Query: 117 PLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 PL S IDT+++++ P+++ L L I H H A+ D+ + ++ Sbjct: 121 PLRISA-IDTVTLSQILMPTAKSYRLRDLTSYLHIE--HDHPHSAVSDAEATGVLLKDLL 177 Query: 176 VGGSQI 181 + Sbjct: 178 AKLRAL 183 >gi|240947949|ref|ZP_04752376.1| ribonuclease T [Actinobacillus minor NM305] gi|240297743|gb|EER48202.1| ribonuclease T [Actinobacillus minor NM305] Length = 216 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53 + KN+ R ++ D+ET GL+++ D ++EI A+ + Y ++ + P G Sbjct: 10 LLKNRFRGYLPVIIDVETAGLNAQTDALLEIAAITVKMDENGYLVPDQKCHYHIQPFEGA 69 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 + ++LK +GI D L+ + E + Q A +AHNA FD GF Sbjct: 70 NINQDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRKAMKEQGCQRAVIVAHNAAFDQGF 129 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A +RIN +DP P + DT ++A + + L C+ I + H AL D Sbjct: 130 LQAAAKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQIANIAFDGKQAHSALYD 187 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ M+ + Sbjct: 188 TEKTTELFCTMVNRLKDLG 206 >gi|170697844|ref|ZP_02888929.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] gi|170137231|gb|EDT05474.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria IOP40-10] Length = 205 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL DR EI + L D +R +Q + GR+ + + L GIT+E Sbjct: 5 AVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTGITNE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S + E F N +AHNA FD F AEL + T+ Sbjct: 63 MIASAPPVSQVMKEAAAFVG--NHPLVAHNAGFDKRFWQAELGMLGMAAEHAFA--CTML 118 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR +P +R + L+SL + + R H A++D+ + S ++ ++ Sbjct: 119 VARRIYPHARSHRLSSLADMLRLPQTGR-AHRAMVDAEIASHLWCRL 164 >gi|330446493|ref|ZP_08310145.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490684|dbj|GAA04642.1| ribonuclease T [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 218 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 21/200 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53 K++ R +V D+ET G ++K D ++EI AV + + K T + P G Sbjct: 9 TLKSRFRGYFPVVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVAPFEGA 68 Query: 54 KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVG 104 + EAL+ +GI D F L+ S E + ++ A +AHNA FD Sbjct: 69 ILNKEALEFNGIRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHS 128 Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ A +R + ++P P DT +++ + L C+ I +R H AL Sbjct: 129 FVMAASERAKLKRNPFHPFATFDTAALSGLAF--GQTVLAKACQTANIPFDNREAHSALY 186 Query: 163 DSHLLSDVYIKMMVGGSQIN 182 D+ ++++ +++ ++ Sbjct: 187 DTERTAELFCEIVNKWKKLG 206 >gi|119472859|ref|ZP_01614766.1| ribonuclease T [Alteromonadales bacterium TW-7] gi|119444691|gb|EAW25998.1| ribonuclease T [Alteromonadales bacterium TW-7] Length = 227 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 22/211 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G + + D ++EI +++ D ++T + P G A++ + Sbjct: 18 PVVIDVETAGFNKETDALLEIAVSVLKMDDDGLLSIDQTVHFHVEPFEGANIEQAAIEFN 77 Query: 64 GITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQR--I 113 GI L+ + E Q + +AHNA FD GF+NA ++R I Sbjct: 78 GIDPFSPLRGAVAEEEAIKEICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERNNI 137 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++A + L C+ GI + H AL D+ +++Y Sbjct: 138 KRTPFHPFVSFDTTTLAGLAL--GQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYCL 195 Query: 174 MM-----VGGSQINFGFKTNEDRFFKEEKKT 199 ++ +GG + ++ +D KE K T Sbjct: 196 IVNRWQELGGWPLAPLDESGDDEAAKEPKTT 226 >gi|37679366|ref|NP_933975.1| ribonuclease T [Vibrio vulnificus YJ016] gi|54036328|sp|Q7MM91|RNT_VIBVY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|37198109|dbj|BAC93946.1| ribonuclease T [Vibrio vulnificus YJ016] Length = 217 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 22/213 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 8 LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 EAL+ +GI D F L+ + E + + A +AHNA FD+ Sbjct: 68 ANLEKEALEFNGIRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDL 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+NA +R P P DT +++ + + L CK G+ +R H AL Sbjct: 128 SFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194 D+ ++++ ++ + G+ ED K Sbjct: 186 YDTEKTAELFCGIVNKWKALG-GWPLIEDENEK 217 >gi|313791823|gb|EFS39934.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA1] Length = 597 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 27 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 83 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 84 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 140 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 141 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 196 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 197 GNLGVTTLEDLL 208 >gi|313637226|gb|EFS02740.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria seeligeri FSL S4-171] Length = 921 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 9/160 (5%) Query: 12 FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG + + DRII+ A ++ K T+ FL P + +L GI+ + + Sbjct: 2 VDLETTGNQASREDRIIQFAAC-FVESGKRLETYATFLNPE-KPIPAFIQELTGISPKDV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 KD P F + ++ ++AHN FD F+ E+ R L + +DT+ +A Sbjct: 60 KDAPLFEDVAPIIAGLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKLDTVELA 116 Query: 131 RRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 R +P L L +G + H H A D+ + +D Sbjct: 117 RIMYPGIDSYKLQDLSDEFG--LGHDKPHQADSDAEVTAD 154 >gi|304403858|ref|ZP_07385520.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus YK9] gi|304346836|gb|EFM12668.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus YK9] Length = 244 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 10/186 (5%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59 I ++ IVFD+ETTG D II GAV + + +F + P R+ Sbjct: 53 IPLRELEIIVFDLETTGFYPYNGDEIISFGAVLVKGDEIFEDVSFYSLVNPK-RRIPMHI 111 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L GIT+E ++ P + +F +F + +AH + D F+NA L R +K L Sbjct: 112 TQLTGITNEMVEGAPDLMQVLHDFMEFVGRR--ILLAHGSGHDKQFLNAALWRTSKVNL- 168 Query: 120 PSRIIDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 R++DT+ +A+ P L+ L + I I+ R H AL DS + + +++ + Sbjct: 169 THRLLDTMMVAKWLEPKRPDGYGLDELLESANIPIADR--HHALKDSIMTAKLWMAYLKK 226 Query: 178 GSQINF 183 + N Sbjct: 227 IQERNI 232 >gi|120599313|ref|YP_963887.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1] gi|120559406|gb|ABM25333.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1] Length = 298 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 7/165 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + I D ETTGL+++ D+IIEI A++ S + F+ + P K + + GIT+ Sbjct: 18 KFIALDAETTGLEAETDKIIEIAAIKFDLLSNDHPVFESLINP-AVKVPRKITNITGITN 76 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L D+P F+ + + F + +A+NAKFD GF++AE + + ++ L Sbjct: 77 KMLVDQPPFAELAQDLKAFIG--DLPIVAYNAKFDKGFLDAEFANVGI--VLNNQYHCAL 132 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++A+ L ++ K I + H A D+ V++ Sbjct: 133 NLAKAAFSLPNYKLATVAKHCNIPLD--EAHRAKADAIAAGRVFM 175 >gi|313823175|gb|EFS60889.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA2] gi|313833843|gb|EFS71557.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL056PA1] gi|314919771|gb|EFS83602.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA3] Length = 604 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 34 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 90 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 91 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 147 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 148 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 203 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 204 GNLGVTTLEDLL 215 >gi|314990240|gb|EFT34331.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA3] Length = 604 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 34 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 90 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 91 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 147 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 148 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 203 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 204 GNLGVTTLEDLL 215 >gi|291524324|emb|CBK89911.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium rectale DSM 17629] Length = 260 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 10/178 (5%) Query: 1 MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + ++ V D+E TGL +KND+IIEIGA + + T + P Sbjct: 16 MSNIDNIKNYTVIDLEMTGLSAKNDKIIEIGAARVR-GGEIVDTISTLVNPKQH-IPQRV 73 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L GITD +++ +F + + N FD F+ + Sbjct: 74 QELTGITDSDVENAADMDVAVDNLLNFIGDD--IILGQNVTFDYSFLKQWAVNHKRTLSL 131 Query: 120 PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + DTL IAR+ P+ ++ L LC+ +G++ + H AL D+ ++ K++V Sbjct: 132 NA--YDTLKIARKCLPAEQSKKLEDLCEYFGVSREN--AHRALDDAIETKQIFEKLLV 185 >gi|118474671|ref|YP_892037.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp. fetus 82-40] gi|118413897|gb|ABK82317.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp. fetus 82-40] Length = 265 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 95/184 (51%), Gaps = 13/184 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIET+G + +IIEIGA++LLD + R F+ F+ +L GI Sbjct: 73 FCVVDIETSGG-INSGQIIEIGALKLLDGVEIGR-FESFV--YAPNVPENISELTGIYAA 128 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L PS +++ +F F ++ ++AHN KFD FI+ L+R+ L +R I T+ Sbjct: 129 DLAKAPSLANVLEKFKLFLG--DSVFVAHNVKFDYDFISISLERLGFGMLL-NRRICTID 185 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +ARR S + L +L + GI+ +H H AL D+ ++++ + + ++ + ++ Sbjct: 186 LARRTIISQKYGLGTLKELLGISNAH---HRALNDAIAAAEIFKECV---KRVPWSIQSV 239 Query: 189 EDRF 192 ED Sbjct: 240 EDLI 243 >gi|85713236|ref|ZP_01044262.1| RNase T, degrades tRNA [Idiomarina baltica OS145] gi|85692931|gb|EAQ30903.1| RNase T, degrades tRNA [Idiomarina baltica OS145] Length = 222 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 78/199 (39%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53 + K + R +V D+ET G ++ D ++EI AV + K + Q + P G Sbjct: 20 LMKQRFRGYLPVVIDVETAGFNASTDALLEIAAVILNFDEHGQLKPVESHQFHVEPFEGA 79 Query: 54 KNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 A++ +GI L+ + + Q + + HN+ FD F Sbjct: 80 NIEQAAIEFNGIDPHSELRGALPEDEVLKALFKPIRKAQKAAGCQRSVLVGHNSNFDHSF 139 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + +R N ++P P DT S+A + L CK GI + H AL D Sbjct: 140 LMRAAERANIKRNPFHPFVSFDTTSLAALTL--GQTVLIKACKAAGIEFDQKQAHSALYD 197 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ M+ + Sbjct: 198 TEKTAELFCWMVNKWKALG 216 >gi|150020376|ref|YP_001305730.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis BI429] gi|149792897|gb|ABR30345.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis BI429] Length = 184 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 11/193 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPE 58 MI +N V D ETTGL+ DRIIE+ V + + + P+ K S Sbjct: 1 MIDENV--YCVLDTETTGLNPYFGDRIIEVAIVPIYKGKIIESWIYHSLVNPHI-KISAL 57 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + K+HGI++ ++ P I + ++ ++ HNA+ D+ F++ + + + P+ Sbjct: 58 SEKIHGISNSEIESAPGLEKILDNIRAY--AKDTIFVMHNARMDLSFLDIATKEVGQFPI 115 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + R IDTL I+ + + L SL + + + H AL D+ L + V++K+ Sbjct: 116 NV-RYIDTLEISLILY-GKKRSLESLVREFK--FGEKVPHRALGDAILTAKVFLKLSEKI 171 Query: 179 SQINFGFKTNEDR 191 + +N + DR Sbjct: 172 ANLNEFVRIWGDR 184 >gi|300173471|ref|YP_003772637.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811] gi|299887850|emb|CBL91818.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811] Length = 801 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG K RII+IG + + + F+ F+ P G+ +L I Sbjct: 7 FVVVDLETTGQSVTKGGRIIQIG-MTFIKQRQIVDHFESFVNP-GQLIDRNIQQLTHIAQ 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +K+ P F + + N N IAHN FD ++N E +R L S IDT+ Sbjct: 65 KDVKNAPYFEELAPMLQNLLN--NTIIIAHNVNFDYPYLNDEFRRTGFPEL-TSSAIDTV 121 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +A+ P++ L L IT+++ H A D+H + +++K+ Q+ Sbjct: 122 QLAQILLPTAPGYRLVDLTTYLDITLNN--AHRANADAHATARLFLKLWQRAEQL 174 >gi|314987763|gb|EFT31854.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA2] Length = 587 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 17 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 73 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 74 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 130 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 131 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 186 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 187 GNLGVTTLEDLL 198 >gi|313764773|gb|EFS36137.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA1] gi|313807207|gb|EFS45694.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA2] gi|313813245|gb|EFS50959.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA1] gi|313820015|gb|EFS57729.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA1] gi|313825546|gb|EFS63260.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA1] gi|313830622|gb|EFS68336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL007PA1] gi|315096369|gb|EFT68345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL038PA1] gi|315101083|gb|EFT73059.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA1] gi|327325880|gb|EGE67670.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL096PA2] gi|328753125|gb|EGF66741.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA1] gi|328759130|gb|EGF72746.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA2] gi|332675138|gb|AEE71954.1| hypothetical protein PAZ_c07700 [Propionibacterium acnes 266] Length = 587 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 17 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 73 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 74 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 130 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 131 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 186 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 187 GNLGVTTLEDLL 198 >gi|225861294|ref|YP_002742803.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae Taiwan19F-14] gi|298230625|ref|ZP_06964306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255368|ref|ZP_06978954.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503192|ref|YP_003725132.1| DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae TCH8431/19A] gi|225726410|gb|ACO22261.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae Taiwan19F-14] gi|298238787|gb|ADI69918.1| DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae TCH8431/19A] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|313815838|gb|EFS53552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA1] gi|314931784|gb|EFS95615.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL067PA1] gi|314956043|gb|EFT00441.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA1] gi|314958449|gb|EFT02552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA1] gi|314976217|gb|EFT20312.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL045PA1] gi|315088618|gb|EFT60594.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA1] gi|327451091|gb|EGE97745.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA3] gi|328753779|gb|EGF67395.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL020PA1] gi|328760388|gb|EGF73957.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL099PA1] Length = 590 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 20 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 76 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 77 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 133 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 134 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 189 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 190 GNLGVTTLEDLL 201 >gi|162455854|ref|YP_001618221.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce 56'] gi|161166436|emb|CAN97741.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce 56'] Length = 258 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 14/177 (7%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 D+ETTG D DRIIE+G V R + + P GR E+ +HGI Sbjct: 42 DQPIAFVDVETTGRDPAGDRIIELGIVIGRSGEILTR-YNWLIHP-GRPIPAESTAIHGI 99 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR--- 122 D ++ KPSF+ + E F + A A+NA FD F+ AEL+R+ P +P Sbjct: 100 KDADVEGKPSFAEVAEEILGCF--KGAIPAAYNATFDRSFLLAELERVGMRPREPPPAMR 157 Query: 123 ----IIDTLSIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +D L+ AR + + + L + R GI++ H A D+ V + Sbjct: 158 REVDWVDPLTFARELYKNEESRALGDMAARLGISLE--KAHRATDDAEAALQVLYAL 212 >gi|222151350|ref|YP_002560506.1| hypothetical protein MCCL_1103 [Macrococcus caseolyticus JCSC5402] gi|222120475|dbj|BAH17810.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 850 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 8/167 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + V DIETTG + +D II++G + ++ K T+ F+ N + L I Sbjct: 4 KYAVVDIETTGNNLDSDEIIQVG-IAIVQNKKIIETYDTFIACNN-EIPAFIQSLTKIDA 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L D P+FS + S + ++AHN +FD+ F+ P IIDT+ Sbjct: 62 FDLVDAPNFSHVASHIIKLLD--GCVFVAHNVQFDLRFLQKYFSEAGHK-FQPRYIIDTV 118 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +PS R L S+ GI +S S H A+ D+ ++V+I+ Sbjct: 119 DWFKIVYPSLERYQLKSIADDLGIELS--SAHRAIDDAVATAEVFIE 163 >gi|168490899|ref|ZP_02715042.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC0288-04] gi|221231602|ref|YP_002510754.1| exonuclease [Streptococcus pneumoniae ATCC 700669] gi|225854318|ref|YP_002735830.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae JJA] gi|183574742|gb|EDT95270.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC0288-04] gi|220674062|emb|CAR68575.1| putative exonuclease [Streptococcus pneumoniae ATCC 700669] gi|225723482|gb|ACO19335.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae JJA] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|149010565|ref|ZP_01831936.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP19-BS75] gi|147765046|gb|EDK71975.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP19-BS75] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|322389907|ref|ZP_08063447.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus parasanguinis ATCC 903] gi|321143343|gb|EFX38781.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus parasanguinis ATCC 903] Length = 836 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 90/187 (48%), Gaps = 14/187 (7%) Query: 2 IRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 + + K + + D+E T G ++K II++G V + D ++++ + P+ R Sbjct: 20 MTRQKRKYAIVDLEATSAGSNAK---IIQVGIVIIEDGR-IRQSYETDVNPHER-LDEHI 74 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L G+TD LK P F+ + E ++ ++A ++AHN KFD + L + Sbjct: 75 KQLTGLTDARLKKAPEFAQVAKEIFELI--EDAVFVAHNVKFDANLLAEALFWEGFELTT 132 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 P IDT+ +++ +P+ R +L +L I + H H AL D+ + + +K+ Sbjct: 133 P--RIDTVELSQIFYPTLERYNLGALAAELEIELHH--AHSALADAMATAQLLLKLREKI 188 Query: 179 SQINFGF 185 + + G Sbjct: 189 ASLPRGL 195 >gi|303255784|ref|ZP_07341825.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455] gi|303260270|ref|ZP_07346241.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP-BS293] gi|303261476|ref|ZP_07347424.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP14-BS292] gi|303264144|ref|ZP_07350065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397] gi|303266246|ref|ZP_07352137.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457] gi|303268684|ref|ZP_07354474.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458] gi|301801646|emb|CBW34344.1| putative exonuclease [Streptococcus pneumoniae INV200] gi|302597168|gb|EFL64273.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455] gi|302637610|gb|EFL68097.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP14-BS292] gi|302638594|gb|EFL69058.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP-BS293] gi|302641744|gb|EFL72101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458] gi|302644176|gb|EFL74432.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457] gi|302646549|gb|EFL76775.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|237649440|ref|ZP_04523692.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI 1974] Length = 831 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 22 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 78 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 79 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 134 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 135 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 191 >gi|225856476|ref|YP_002737987.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae P1031] gi|225724714|gb|ACO20566.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae P1031] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|149003435|ref|ZP_01828324.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP14-BS69] gi|237821000|ref|ZP_04596845.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI 1974M2] gi|147758618|gb|EDK65616.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP14-BS69] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|169833275|ref|YP_001694265.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae Hungary19A-6] gi|168995777|gb|ACA36389.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae Hungary19A-6] gi|327390159|gb|EGE88502.1| putative dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA04375] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|261885284|ref|ZP_06009323.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 243 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 95/184 (51%), Gaps = 13/184 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIET+G + +IIEIGA++LLD + R F+ F+ +L GI Sbjct: 51 FCVVDIETSGG-INSGQIIEIGALKLLDGVEIGR-FESFV--YAPNVPENISELTGIYAA 106 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L PS +++ +F F ++ ++AHN KFD FI+ L+R+ L +R I T+ Sbjct: 107 DLAKAPSLANVLEKFKLFLG--DSVFVAHNVKFDYDFISISLERLGFGMLL-NRRICTID 163 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +ARR S + L +L + GI+ +H H AL D+ ++++ + + ++ + ++ Sbjct: 164 LARRTIISQKYGLGTLKELLGISNAH---HRALNDAIAAAEIFKECV---KRVPWSIQSV 217 Query: 189 EDRF 192 ED Sbjct: 218 EDLI 221 >gi|168484461|ref|ZP_02709413.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1873-00] gi|172042316|gb|EDT50362.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1873-00] gi|332203958|gb|EGJ18025.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA47368] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|167837493|ref|ZP_02464376.1| possible DNA polymerase/helicase [Burkholderia thailandensis MSMB43] Length = 379 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V +++ S T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAAEHRITEIGVV-VVNASHV-STWTTLVDP-RQPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I S ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIASALFERLD--GKLFVAHNASFDRGFLRAEFERAGVAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|289426896|ref|ZP_06428622.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165] gi|295130296|ref|YP_003580959.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Propionibacterium acnes SK137] gi|289159985|gb|EFD08163.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165] gi|291376452|gb|ADE00307.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Propionibacterium acnes SK137] gi|313772552|gb|EFS38518.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL074PA1] gi|313802090|gb|EFS43322.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA2] gi|313838422|gb|EFS76136.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL086PA1] gi|314918505|gb|EFS82336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA1] gi|314925502|gb|EFS89333.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA3] gi|314963121|gb|EFT07221.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA1] gi|314973624|gb|EFT17720.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA1] gi|315077585|gb|EFT49643.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA2] gi|315084628|gb|EFT56604.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA2] gi|327447777|gb|EGE94431.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA1] gi|327453554|gb|EGF00209.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA2] Length = 584 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 14 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 70 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 71 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 127 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 128 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 183 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 184 GNLGVTTLEDLL 195 >gi|332204813|gb|EGJ18878.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA47901] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|301793959|emb|CBW36355.1| putative exonuclease [Streptococcus pneumoniae INV104] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|332202666|gb|EGJ16735.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA41317] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|315658260|ref|ZP_07911132.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus lugdunensis M23590] gi|315496589|gb|EFU84912.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus lugdunensis M23590] Length = 893 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + D T+ + + P L I ++ Sbjct: 6 YAVVDLETTGNQLDYDEIIQIGITFVRDQKIVG-TYHSMIN-TDVEIPPFIQALTSIEED 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK P F + + + +++ ++AHN FD+ FI +R N P ++IDT+ Sbjct: 64 MLKQAPYFHEVAEDVYKQL--KDSVFVAHNVSFDLTFIKKAFKR-NHIHFQPKKVIDTVE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + P L+ L + + I + + H A D+ + + IK Sbjct: 121 LFKIAFPTDKSYQLSELAEAHHIPLDN--AHRADEDATTTAKLMIK 164 >gi|225858612|ref|YP_002740122.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae 70585] gi|225720171|gb|ACO16025.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae 70585] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|315648491|ref|ZP_07901590.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453] gi|315276185|gb|EFU39531.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453] Length = 246 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 9/173 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEA 59 +++ +VFD+ETTG + + D I+ GAV ++ +F + + +G P Sbjct: 54 TPLDELEVVVFDLETTGFNHQHGDEILSFGAVRVIGEQVIEQESFHMIVN-SGSPVPPFI 112 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L GIT + P +F F + +AH A D GF+NA L + +K L Sbjct: 113 TELTGITQHMVDAAPPLMEGLHDFMAFVGGR--VLVAHAAAHDRGFLNAALWKTSKVRL- 169 Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R++DT+ +A+R +P L+ L + I + R H AL D+ + + ++ Sbjct: 170 THRLLDTMMLAQRLYPEQTDYSLDELLRNCSIPVEGR--HHALSDARMTARLW 220 >gi|307127646|ref|YP_003879677.1| DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae 670-6B] gi|306484708|gb|ADM91577.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae 670-6B] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|268317061|ref|YP_003290780.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252] gi|262334595|gb|ACY48392.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252] Length = 616 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 10/164 (6%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66 VFD ETTGL + D II IGAV ++ TF + P R S +++++HGI Sbjct: 422 YTVFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNP-RRPISLDSVRVHGIQ 480 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+DKP + F+ F ++ + HN FD+ FI + + + P ++DT Sbjct: 481 PVLLQDKPPIEEVLPRFYRF--ARDTVLVGHNVAFDLKFIRQKEKALGLRFDQP--VLDT 536 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + +A P ++ L+ L +GI R H AL D+ + ++ Sbjct: 537 MLLAAVVDPERQHYGLDELAAAFGIEPVGR--HSALGDALITAE 578 >gi|148992472|ref|ZP_01822167.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP9-BS68] gi|149007688|ref|ZP_01831305.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP18-BS74] gi|168489814|ref|ZP_02714013.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae SP195] gi|147760843|gb|EDK67814.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP18-BS74] gi|147928789|gb|EDK79802.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP9-BS68] gi|183571801|gb|EDT92329.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae SP195] gi|332077219|gb|EGI87681.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae GA17545] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|332534627|ref|ZP_08410459.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505] gi|332035907|gb|EGI72388.1| ribonuclease T [Pseudoalteromonas haloplanktis ANT/505] Length = 234 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA-VELLDYSK---TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G + + D ++EI A V +D + T + P G A+ + Sbjct: 18 PVVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIDFN 77 Query: 64 GITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQR--I 113 GI L+ + E Q + +AHNA FD GF+NA ++R I Sbjct: 78 GIDPFSPLRGAVPEDEVIKEICKVVRKAQKAAGCQRSVIVAHNAAFDHGFLNAAIERNNI 137 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT S+A + L C+ GI + H AL D+ +++Y Sbjct: 138 KRTPFHPFVSFDTTSLAGLAL--GQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYCL 195 Query: 174 MMVGGSQIN 182 ++ Q+ Sbjct: 196 IVNRWQQLG 204 >gi|307708507|ref|ZP_07644972.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus mitis NCTC 12261] gi|307615423|gb|EFN94631.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus mitis NCTC 12261] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPKLEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLQEKMAQLPKGL 176 >gi|168492961|ref|ZP_02717104.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC3059-06] gi|183577104|gb|EDT97632.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC3059-06] Length = 816 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D +N ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--ENGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|217970248|ref|YP_002355482.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|217507575|gb|ACK54586.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 203 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 9/161 (5%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL + DR EI AV + D +R +Q + G + L GI++ Sbjct: 5 AVIDFETTGLSPAQGDRATEIAAVIVRDGRVVDR-YQSLMN-AGVRIPAHIESLTGISNA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+ + + E DF +AHNA FD F +AEL RI + + +L Sbjct: 63 MIRSAPTAAQVMREVADFIG--GIPMVAHNAAFDAKFWDAELARIER--ARKQDFVCSLL 118 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 ++RR P + + L +L + + ++ R H AL D+ + + Sbjct: 119 LSRRLFPLAPSHRLGALVEYARLPVAGR-FHRALADAEMAA 158 >gi|241896118|ref|ZP_04783414.1| DNA-directed DNA polymerase III epsilon subunit [Weissella paramesenteroides ATCC 33313] gi|241870632|gb|EER74383.1| DNA-directed DNA polymerase III epsilon subunit [Weissella paramesenteroides ATCC 33313] Length = 970 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 8/173 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 NK V D+ETT S++ RII+I A+ + K F + P+ ++L Sbjct: 28 MLNKDIYAVVDLETTRTTSESGRIIQI-AIAFVQNKKIINQFSTLINPH-ESIPRNVVQL 85 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI E + PSF + ++AHN FD+ F+NAE QRI + L+ Sbjct: 86 TGINAEMVAGAPSFEEVAESIHTML--TGTIFVAHNVNFDLPFLNAEFQRIGMNTLNLVA 143 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+++++ P++ L L + + H H A D+ +++ I++ Sbjct: 144 -IDTVTLSQIVWPTAPGFRLVDLTSY--LALVHGRPHQADSDALATAELLIQI 193 >gi|168486184|ref|ZP_02710692.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1087-00] gi|183570792|gb|EDT91320.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae CDC1087-00] Length = 816 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|313827785|gb|EFS65499.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA2] Length = 590 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 20 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 76 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 77 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 133 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 134 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 189 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 190 GNLGVTTFEDLL 201 >gi|148985845|ref|ZP_01818939.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP3-BS71] gi|148990415|ref|ZP_01821581.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP6-BS73] gi|168575465|ref|ZP_02721401.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae MLV-016] gi|194397188|ref|YP_002037447.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae G54] gi|307067407|ref|YP_003876373.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200] gi|147921991|gb|EDK73115.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP3-BS71] gi|147924320|gb|EDK75413.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP6-BS73] gi|183578476|gb|EDT99004.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus pneumoniae MLV-016] gi|194356855|gb|ACF55303.1| Dna polymerase III, epsylon subunit/ATP-dependent helicase DinG [Streptococcus pneumoniae G54] gi|301799817|emb|CBW32386.1| putative exonuclease [Streptococcus pneumoniae OXC141] gi|306408944|gb|ADM84371.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200] Length = 816 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|332652795|ref|ZP_08418540.1| exonuclease [Ruminococcaceae bacterium D16] gi|332517941|gb|EGJ47544.1| exonuclease [Ruminococcaceae bacterium D16] Length = 195 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 10/201 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I FD+ET +S NDRI IG V +++ + P R S + L GIT Sbjct: 4 RYIAFDVETP--NSANDRISAIG-VTVVERGAVVEQHDYLVNPETRFAS-FNVALTGITP 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + DKP+F ++ E F+ IAHNA FD+ + L+ T Sbjct: 60 EMVADKPAFPQLWQELEPIFDSG--LLIAHNAPFDMSVLAKCLRDYGIRWRPSVSYACTC 117 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++RR P + LN+LC G+ + H H A DS ++ + + G+ + + Sbjct: 118 QMSRRLLPQLPNHKLNTLCDFLGLELDH---HRAGSDSLACGEILLHHLHSGADLTPFIR 174 Query: 187 TNEDRFFKEEKKTVPNISLLK 207 T + + + + Sbjct: 175 TYDLIAIRTMQPARRGWGSRR 195 >gi|157151695|ref|YP_001450717.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gordonii str. Challis substr. CH1] gi|157076489|gb|ABV11172.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus gordonii str. Challis substr. CH1] Length = 824 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 11/175 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M RKN M+ + D+E TG S +II++G V L D + T+Q + P+ Sbjct: 1 MKRKN-MKYAIVDLEATGTGS-TAKIIQVGIVILEDG-EIKETYQTDINPHEA-LEEHIK 56 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G++D+ L P FS + E ++ ++A ++AHN KFD + L D L P Sbjct: 57 QLTGLSDQRLSQAPDFSQVAREIYELI--EDAVFVAHNVKFDANLLAESLFWEGFDLLSP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ P+ + L+SLC+ I + H A+ D+ + +++K+ Sbjct: 115 --RVDTVELAQVVFPTYEKYGLSSLCELLEIPLE--QAHTAISDAMATALLFLKI 165 >gi|27366371|ref|NP_761899.1| ribonuclease T [Vibrio vulnificus CMCP6] gi|320156882|ref|YP_004189261.1| ribonuclease T [Vibrio vulnificus MO6-24/O] gi|29611837|sp|Q8D882|RNT_VIBVU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|27362572|gb|AAO11426.1| ribonuclease T [Vibrio vulnificus CMCP6] gi|319932194|gb|ADV87058.1| ribonuclease T [Vibrio vulnificus MO6-24/O] Length = 217 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 22/213 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P +G Sbjct: 8 LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFDG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 EAL+ +GI D F L+ + E + + A +AHNA FD+ Sbjct: 68 ANLEKEALEFNGIRDPFSPLRGAVTEQEALKEIYKLIRREQKAADCSRAIMVAHNAAFDL 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+NA +R P P DT +++ + + L CK G+ +R H AL Sbjct: 128 SFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFK 194 D+ ++++ ++ + G+ ED K Sbjct: 186 YDTEKTAELFCGIVNKWKALG-GWPLIEDENEK 217 >gi|315108203|gb|EFT80179.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA2] Length = 584 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 14 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 70 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 71 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 127 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 128 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 183 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 184 GNLGVTTFEDLL 195 >gi|86133336|ref|ZP_01051918.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] gi|85820199|gb|EAQ41346.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152] Length = 359 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 16/203 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + D + F + P + ++L GI ++ Sbjct: 2 YAILDIETTGGKFNEEGITEIAIYKY-DGQEIVDQFISLINPE-KPIQEFVVRLTGINNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ P F + + +N +AHN+ FD + E R+ D + + T+ Sbjct: 60 MLKNAPKFYEVAKRIVEI--TKNCIIVAHNSAFDYRILRTEFDRLGFDFERNT--LCTVE 115 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG-------GSQ 180 +++ L L K GI IS R H A D+ ++ ++ + Sbjct: 116 LSQALILDQPSYSLGKLTKSLGIPISDR--HRATGDALATVKLFKLLLEKDHKKTIIQNA 173 Query: 181 INFGFKTNEDRFFKEEKKTVPNI 203 I + K E + K + +P + Sbjct: 174 IKYFDKRLEKQKLKNLIEEIPAV 196 >gi|327332247|gb|EGE73984.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL096PA3] Length = 584 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 14 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 70 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 71 GITHAMVRSAPSLSTVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 127 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 128 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 183 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 184 GNLGVTTLEDLL 195 >gi|237654661|ref|YP_002890975.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237625908|gb|ACR02598.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 482 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 88/196 (44%), Gaps = 9/196 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R D+E+TG DRI EI + + D R ++ + P G+ P ++ GI+D Sbjct: 6 RLAFIDVESTGAHPVRDRITEIAILRVEDGEVVAR-WESLVAP-GQPIPPLIEEVTGISD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P+F + + ++AH+A+FD GFI RI ++ P ++ T+ Sbjct: 64 AMVAEAPAFEVLADTVAALL--EGCVFVAHSARFDYGFIRNAFTRIGREFEAP--VLCTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 ++R +P R+ L++L +R+G+ + ++H A+ D +L + G + Sbjct: 120 KLSRALYPEHHRHGLDALIERHGLVCA--ARHRAMGDVEVLWQFVRGLEAGFAPEVLARA 177 Query: 187 TNEDRFFKEEKKTVPN 202 + +P Sbjct: 178 AARAMKAPTQPPGLPE 193 >gi|160901638|ref|YP_001567219.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95] gi|160359282|gb|ABX30896.1| DNA polymerase III, epsilon subunit [Petrotoga mobilis SJ95] Length = 187 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 9/177 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPE 58 M K+K+ + D ETTGL+ + DRIIEI A+ + D + F + PN E Sbjct: 1 MKVKDKV-FLALDFETTGLNPELGDRIIEIAAIPIYDKKINFKYAFHTLVNPNIF-IPGE 58 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 K H + ++ + + PS S +F F ++ + ++ ++HN K D+ F++ + + Sbjct: 59 VSKFHKLNNQDISNAPSLSEVFPRFKEYID--DSIIVSHNVKMDLRFLDIAAKESGMFSI 116 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D + IDTL I++ +L L K++ + I + H A D+ + ++ K + Sbjct: 117 D-NYYIDTLEISKYYFDKGPYNLEFLSKKFNLGI--KQFHRAWDDALSTAKLFQKYI 170 >gi|289167702|ref|YP_003445971.1| ATP-dependent helicase DinG [Streptococcus mitis B6] gi|288907269|emb|CBJ22104.1| ATP-dependent helicase DinG [Streptococcus mitis B6] Length = 816 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIVD-HYTSDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 KRLAQAPDFSQVARKIFDLV--KDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMAQLPKGL 176 >gi|148997118|ref|ZP_01824772.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP11-BS70] gi|147756818|gb|EDK63858.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus pneumoniae SP11-BS70] Length = 816 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMTQLPKGL 176 >gi|289426266|ref|ZP_06428012.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187] gi|289153431|gb|EFD02146.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187] Length = 584 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 14 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 70 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S+I + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 71 GITHAMVRSAPSLSAILPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 127 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 128 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 183 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 184 GNLGVTTLEDLL 195 >gi|125624796|ref|YP_001033279.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp. cremoris MG1363] gi|124493604|emb|CAL98589.1| Probable ATP-dependent helicase dinG homolog [Lactococcus lactis subsp. cremoris MG1363] gi|300071596|gb|ADJ60996.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 791 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 87/168 (51%), Gaps = 8/168 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E T S ++II+IG + L++ K T+ + P+ P +L G++D Sbjct: 3 RYAVVDLEATDAHSSENKIIQIG-IALVEGGKIVETYSTEVNPH-EPLLPRISELTGLSD 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + LK P FS + SE ++ ++AHNA+FD G + + + +DT+ Sbjct: 61 KQLKSAPDFSEVASEVRKLL--TDSVFVAHNARFDYGLLEKSFLNAGLE-FNEMLRVDTV 117 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR +P+ + L +L ++ + ++H H A+ D++ +++ I++ Sbjct: 118 DLARVFYPTFEKYGLEALSEK--LDLAHDHPHAAVSDAYATAELLIRI 163 >gi|15900695|ref|NP_345299.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pneumoniae TIGR4] gi|111658147|ref|ZP_01408844.1| hypothetical protein SpneT_02000672 [Streptococcus pneumoniae TIGR4] gi|149021672|ref|ZP_01835703.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72] gi|14972279|gb|AAK74939.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus pneumoniae TIGR4] gi|147930133|gb|EDK81119.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72] Length = 816 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLRKKMTQLPKGL 176 >gi|54309733|ref|YP_130753.1| ribonuclease T [Photobacterium profundum SS9] gi|54036326|sp|Q6LP25|RNT_PHOPR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|46914171|emb|CAG20951.1| putative ribonuclease T [Photobacterium profundum SS9] Length = 223 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 21/200 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53 K++ R +V D+ET G ++K D ++EI AV + + K T + P G Sbjct: 9 TLKSRFRGYFPVVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGA 68 Query: 54 KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVG 104 EAL+ +GI D F L+ S + E + ++ A +AHNA FD Sbjct: 69 VLHKEALEFNGIRDPFSPLRGAVSEETALKEIYKQIRKEQKTADCSRAIMVAHNANFDHS 128 Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ +R + ++P P DT +++ + L CK GI ++ H AL Sbjct: 129 FVMEASERARLKRNPFHPFATFDTAALSGLAF--GQTVLAKACKTAGIAFDNKEAHSALY 186 Query: 163 DSHLLSDVYIKMMVGGSQIN 182 D+ ++++ +++ ++ Sbjct: 187 DTERTAELFCEIVNKWKKLG 206 >gi|296110415|ref|YP_003620796.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154] gi|295831946|gb|ADG39827.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154] Length = 801 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG +K RII+IG + + K F+ F+ P G+ + +L I+ Sbjct: 7 FVVVDLETTGQSVAKGGRIIQIG-MTFIKQRKIVDHFESFVNP-GQLIARNIQQLTHISQ 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +K+ P F I + ++A IAHN FD ++N E R L+ + IDT+ Sbjct: 65 KEVKNAPYFEEIAPLLQNLL--KDAVIIAHNINFDYPYLNDEFVRTGFQKLNSAA-IDTV 121 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +A+ P++ L L IT+++ H A D+H + +++K+ Q+ Sbjct: 122 QLAQILLPTAPGYRLLDLTTYLDITLNN--AHRANADAHATALLFLKLWQRAEQL 174 >gi|171317951|ref|ZP_02907125.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] gi|171096851|gb|EDT41725.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5] Length = 205 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL DR EI + L D +R +Q + GR+ + + L GIT+E Sbjct: 5 AVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTGITNE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S + E F N +AHNA FD F AEL + T+ Sbjct: 63 MIASAPPVSQVMKEAAAFVG--NHPVVAHNAGFDKRFWQAELGMLGMAAEHAFA--CTML 118 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR +P +R + L+SL + + R H A++D+ + S ++ ++ Sbjct: 119 VARRIYPHARSHRLSSLADMLRLPQTGR-AHRAMVDAEIASHLWCRL 164 >gi|284032480|ref|YP_003382411.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM 17836] gi|283811773|gb|ADB33612.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM 17836] Length = 415 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 10/206 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTGL R+IEI V L + + + L P R P+ +HGI Sbjct: 2 YAVIDTETTGLLPGHRHRVIEIAVVLLDQHGRFEHEWVTLLNPQ-RDLGPQ--HIHGILT 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126 + P F + + + HN +FD+GF+ AE R+ PL R + T Sbjct: 59 ADVLAAPEFVDVARHLGALLAGRM--VVGHNVEFDLGFLRAEFARLGHVVPLITERSMCT 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 +++A +P S+ L + C GI++ + H AL D+ ++++ + ++ Sbjct: 117 MALAGYLYPGSKRTLGACCAAAGISL--QGWHSALADTRATAELFATYLRSFPSPP-PWQ 173 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPL 212 + +P + +P+ Sbjct: 174 WAYEEIRGLPWPELPGTTFTPTVRPV 199 >gi|156975262|ref|YP_001446170.1| ribonuclease T [Vibrio harveyi ATCC BAA-1116] gi|269962098|ref|ZP_06176452.1| ribonuclease T [Vibrio harveyi 1DA3] gi|166200023|sp|A7MUL2|RNT_VIBHB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|156526856|gb|ABU71942.1| hypothetical protein VIBHAR_02991 [Vibrio harveyi ATCC BAA-1116] gi|269833182|gb|EEZ87287.1| ribonuclease T [Vibrio harveyi 1DA3] Length = 214 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 8 LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHIEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 EAL+ +GI D F L+ S E + ++ A +AHNA FD+ Sbjct: 68 ANLEKEALEFNGIRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDL 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+NA +R P P DT +++ + + L CK G+ +R H AL Sbjct: 128 SFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQQTAELFCGIVNKWKALG 206 >gi|305665063|ref|YP_003861350.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88709815|gb|EAR02047.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170] Length = 461 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 9/170 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG K ++I EI + Y + F + P + L GI ++ Sbjct: 2 YTIVDIETTGNGIKGNKITEISIFKYDGYDIIDE-FTSLVNPEC-EIPYFITGLTGIDND 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P I + + ++ ++AH+ FD G I EL+ I D + + T+ Sbjct: 60 LVRDAPKLIEISHKILEI--TKDTIFVAHSVGFDYGVIKNELKTIGLDF--TRKKLCTVR 115 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++R+ P L +C I ++ R H A D+H + ++ K++ Sbjct: 116 LSRKLIPGYNSYSLGKICSALKIPLTDR--HRARGDAHATTLLFQKLLRA 163 >gi|116512711|ref|YP_811618.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11] gi|116108365|gb|ABJ73505.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11] Length = 791 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 87/168 (51%), Gaps = 8/168 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E T S ++II+IG + L++ K T+ + P+ P +L G++D Sbjct: 3 RYAVVDLEATDAHSSENKIIQIG-IALVEGGKIVETYSTEVNPH-EPLLPRISELTGLSD 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + LK P FS + SE ++ ++AHNA+FD G + + + +DT+ Sbjct: 61 KQLKSAPDFSEVASEVRKLL--TDSVFVAHNARFDYGLLEKSFLNAGLE-FNEMLRVDTV 117 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR +P+ + L +L ++ + ++H H A+ D++ +++ I++ Sbjct: 118 DLARVFYPTFEKYGLEALSEK--LDLAHDHPHAAVSDAYATAELLIRI 163 >gi|302519143|ref|ZP_07271485.1| DNA polymerase III [Streptomyces sp. SPB78] gi|302428038|gb|EFK99853.1| DNA polymerase III [Streptomyces sp. SPB78] Length = 664 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 12/205 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ET+GL ++ DR++ + V + + F + P P + +HG+T E L Sbjct: 75 VDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDPGC---DPGPVDVHGLTRERLS 131 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P+F I Q+ +AHNA+FD F+ E R + L +R + TL++ R Sbjct: 132 GAPAFGQIAGRLGAML--QDRVLVAHNAQFDYDFLAHEFARA-RLYLPVTRRLCTLALNR 188 Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS---QINFGFKT 187 + P +R+ L SL YG+ + H AL D+ +L+ ++++ + + + F T Sbjct: 189 QVDPPTRDMKLGSLAAHYGVPRT--RAHDALDDTRVLAGIFLRATLREAARLDLPLPFVT 246 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPL 212 R + P R+ Sbjct: 247 CPPRQDPQFAPQPPKTPCAYRNPGR 271 >gi|227550341|ref|ZP_03980390.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium TX1330] gi|257886431|ref|ZP_05666084.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501] gi|227180543|gb|EEI61515.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium TX1330] gi|257822287|gb|EEV49417.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501] Length = 297 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + I++IGA++ + +R +Q + P S K+ G+ E Sbjct: 126 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELE 184 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P+F + F + +AHNA FD+ F+ +L N + R+IDTL Sbjct: 185 DVVNMPTFEDFSPQLMSFISC--YTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 242 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR + + L +L + + H AL D + + VY + Sbjct: 243 LARRHFETPNHKLITLKDYLNLDN---NSHDALEDCLVTNKVYQYI 285 >gi|254517741|ref|ZP_05129797.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium sp. 7_2_43FAA] gi|226911490|gb|EEH96691.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium sp. 7_2_43FAA] Length = 188 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I+ K R I FD+ETTGL ND+IIE+GAV + + + + A Sbjct: 21 IKNLKNRYIAFDVETTGLSPINDKIIEVGAVLFENGEII-KKYSYLVNLE-VVIPASATA 78 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPL 118 ++ IT+E ++D ++++E F ++ + AHNA FD+ FI+ L R+ D Sbjct: 79 VNHITNEMIQDATKEDTVYAELVKFLDDALKEQTVICAHNATFDMKFISETLMRLGYDGK 138 Query: 119 DPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +DTLS++R N +++ + + + H A+ D+ + + Sbjct: 139 IH--YVDTLSLSRNLFKGLHNYKQDTVATHF--ELVNFQSHRAVSDAEICGRIL 188 >gi|115359655|ref|YP_776793.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] gi|172064467|ref|YP_001812118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] gi|115284943|gb|ABI90459.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD] gi|171996984|gb|ACB67902.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6] Length = 205 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL DR EI + L D +R +Q + GR+ + + L GIT+E Sbjct: 5 AVLDFETTGLSPNLGDRATEIAVILLRDGEIVDR-YQSLMN-AGRRIPSDVVALTGITNE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S + E F N +AHNA FD F AEL + T+ Sbjct: 63 MIASAPPVSQVMKEAAAFVG--NHPVVAHNAGFDKRFWQAELGMLGMAAEHAFA--CTML 118 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR +P +R + L+SL + + R H A++D+ + S ++ ++ Sbjct: 119 VARRIYPHARSHRLSSLADMLRLPQTGR-AHRAMVDAEIASHLWCRL 164 >gi|303271977|ref|XP_003055350.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545] gi|226463324|gb|EEH60602.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545] Length = 1468 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 60/182 (32%), Positives = 90/182 (49%), Gaps = 17/182 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTGL DRIIEI A +L D KT+ + P + + +L GIT+ Sbjct: 308 IVFDLETTGLAKLKDRIIEIAAYDLND--KTHAPMSTLVNPGRTYLTGQITRLTGITNAM 365 Query: 70 LKD--KPSF---SSIFSEFWDFFNEQN----AEWIAHNAK-FDVGFINAELQRINKDPLD 119 + + PSF + + EF D + AHNA+ FD GF+ AE RI ++ D Sbjct: 366 VSNPGVPSFVRAAELLEEFVDEARRRGGGASVILAAHNARQFDAGFLKAEYDRIQREFPD 425 Query: 120 PSRIIDTLSIARRKHP----SSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKM 174 R +DTL IAR+ P + + +L RY + + + H A D+ +L ++ M Sbjct: 426 DWRFVDTLPIARKLVPKTEVFGSHKMEALATRYDVKPVDGETAHRAGADARVLGEIVEAM 485 Query: 175 MV 176 + Sbjct: 486 LG 487 >gi|269965971|ref|ZP_06180063.1| ribonuclease T [Vibrio alginolyticus 40B] gi|269829367|gb|EEZ83609.1| ribonuclease T [Vibrio alginolyticus 40B] Length = 214 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L T + P G Sbjct: 8 LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLKMDEHGVLHPASTIHFHVEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 EAL+ +GI D F L+ S E + ++ A +AHNA FD+ Sbjct: 68 ANLEKEALEFNGIRDPFSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDL 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 GF+NA +R P P DT +++ + + L CK G+ +R H AL Sbjct: 128 GFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQKTAELFCGIVNKWKALG 206 >gi|296127268|ref|YP_003634520.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM 12563] gi|296019084|gb|ADG72321.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM 12563] Length = 252 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 9/165 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL + D+IIEIGA++ D + + F + + IT++ Sbjct: 61 YTIIDVETTGLKPREDKIIEIGAIKYRDNKEID-YFSTLVKVDY--IPNFISSYTNITNK 117 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI-NKDPLDPSRIIDTL 127 +K+ P +F+DF + + +N FD+ F+ L + N + L + ID + Sbjct: 118 MVKNAPRVDEAIKQFYDFVGDD--ILVGYNVPFDIKFLYDALYEVSNGELLLNNDFIDVM 175 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 IA+R ++ Y I+I + H A+ D L S +Y Sbjct: 176 YIAKRVLKDLENYKQVTVASYYNISIDN--LHRAMGDCKLCSAIY 218 >gi|325529244|gb|EGD06199.1| DNA polymerase III, epsilon subunit [Burkholderia sp. TJI49] Length = 205 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL DR EI + L D +R +Q + GR+ + + L GIT++ Sbjct: 5 AVLDFETTGLSPNLGDRATEIAVILLRDGQIVDR-YQSLMN-AGRRIPSDVVALTGITND 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + + E F + +AHNA FD F AEL R++ T+ Sbjct: 63 MIASAPPAAKVMKEAAAFVGKH--AVVAHNAGFDKRFWQAELGRLDVSAEHAFA--CTML 118 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR +P +R + L+SL + + S R H A++D+ + ++ ++ Sbjct: 119 VARRIYPDARSHRLSSLAEMLQLPKSGR-AHRAMVDAEMAGHLWCRL 164 >gi|257900260|ref|ZP_05679913.1| DNA polymerase subunit III [Enterococcus faecium Com15] gi|257838172|gb|EEV63246.1| DNA polymerase subunit III [Enterococcus faecium Com15] Length = 295 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + I++IGA++ + +R +Q + P S K+ G+ E Sbjct: 124 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELE 182 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P+F + F + +AHNA FD+ F+ +L N + R+IDTL Sbjct: 183 DVVNMPTFEDFSPQLMSFISC--YTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 240 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR + + L +L + + H AL D + + VY + Sbjct: 241 LARRHFETPNHKLITLKDYLNLDN---NSHDALEDCLVTNKVYQYI 283 >gi|116333503|ref|YP_795030.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367] gi|116098850|gb|ABJ63999.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367] Length = 948 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V DIETTG DRII+IG V + +++ F+ + P ++ +L GIT+ Sbjct: 7 YAVVDIETTGTSVTDGDRIIQIGCV-FVQHNQVINHFETDVNP-LKEIPAAISRLTGITN 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++ P F + + N ++AHN FD+ FINAEL+R+ L P +DT+ Sbjct: 65 KRVRHAPLFDDVAGTLYSLL--TNTVFVAHNVNFDLPFINAELERVGYPAL-PIAAVDTV 121 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 S+++ P++ L L + + I H + H A D+ ++++I Sbjct: 122 SLSQILLPTATSFRLRDLSRLFNIE--HDNPHSADSDASATAELFI 165 >gi|157165763|ref|YP_001466765.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826] gi|112800127|gb|EAT97471.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826] Length = 267 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 15/205 (7%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 ++ V DIETTG N +IIEIGA+++ + ++ R F+ F+ +L G Sbjct: 72 SEQEFCVVDIETTGGT-TNGQIIEIGAIKMKNGTEIGR-FESFVA--ASVVPENITELTG 127 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I L P+ ++ F F + +IAHN FD GFI+ L I L +R + Sbjct: 128 IRASDLVGAPNLLNVLERFKIFLGT--SVFIAHNVNFDYGFISHSLNEIGLGILL-NRKL 184 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 T+ ++RR S + L SL + GI +H H AL D+ ++++ + + F Sbjct: 185 CTIDLSRRTIASQKYGLGSLKELLGINNTH---HRALNDAIAAAEIFKVCL---KSLPFS 238 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRD 209 +T ED K P++ L Sbjct: 239 IQTTEDLI--SFSKNAPSVKLKPEP 261 >gi|314968043|gb|EFT12142.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA1] Length = 584 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 14 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-PIPASVQVLT 70 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT ++ PS S++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 71 GITHAMVRSAPSLSAVLPSWLEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWGDPA-V 127 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 128 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 183 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 184 GNLGVTTFEDLL 195 >gi|307249394|ref|ZP_07531386.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858580|gb|EFM90644.1| Ribonuclease T [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 218 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 21/205 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET GL+++ D ++E+ A+ + Y ++ + P G Sbjct: 12 KNRFRGYLPVIIDVETAGLNAQTDALLELAAITVKMDENGYLVPDQKCHFHIQPFEGANI 71 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +P++LK +GI D L+ + E + Q A +AHNA FD F+ Sbjct: 72 NPDSLKFNGIDIDNPLRGAVPENIAIPEMFKMVRRAMKEQGCQRAVIVAHNATFDQAFVQ 131 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A ++RIN +DP P + DT ++ + + L C+ I + H AL D+ Sbjct: 132 AAVKRINAKRDPFHPFAMFDTATLTGFMY--GQTVLVKACQMAKIPFDGKQAHSALYDTE 189 Query: 166 LLSDVYIKMMVGGSQINFGFKTNED 190 ++++ M+ + GF D Sbjct: 190 KTTELFCAMVNRLKDLG-GFPLVSD 213 >gi|322392254|ref|ZP_08065715.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus peroris ATCC 700780] gi|321144789|gb|EFX40189.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus peroris ATCC 700780] Length = 823 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 10/185 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + R +V D+E T SK +II++G V + D + + + P+ + Sbjct: 1 MNFRNDRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVEQ-YATDVNPHEH-LDSHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + ++ ++ ++AHN +FD + L + P Sbjct: 58 LTGLTDKRLAKAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 IDT+ +A+ +P + +L LC+ GI + H AL D+ +++++ M Q Sbjct: 115 -RIDTVELAQVFYPQLEKYNLGILCQELGIPLE--QAHTALSDAQATAELFLCMRQKMFQ 171 Query: 181 INFGF 185 + G Sbjct: 172 LPKGL 176 >gi|312881846|ref|ZP_07741617.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122] gi|309370492|gb|EFP97973.1| ribonuclease T [Vibrio caribbenthicus ATCC BAA-2122] Length = 215 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 22/206 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKN 55 K++ R +V D+ET G ++ D ++EI A+ + T + P G Sbjct: 11 KDRFRGYFPVVIDVETAGFNADTDALLEICAITLTMDEFGNLIPASTLHFHVEPFEGANI 70 Query: 56 SPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFI 106 EAL+ +GI D F L+ + + E + ++ A +AHNA FD F+ Sbjct: 71 EKEALEFNGIRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCNRAIIVAHNATFDHNFV 130 Query: 107 NAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A +R P P DT +++ + + L CK G+ ++ H AL D+ Sbjct: 131 MAASERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNKEAHSALYDT 188 Query: 165 HLLSDVYIKMMVGGSQINFGFKTNED 190 ++++ ++ + G+ E Sbjct: 189 QKTAELFCGIVNKWKSLG-GWPLVEH 213 >gi|257889197|ref|ZP_05668850.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733] gi|257825269|gb|EEV52183.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733] Length = 295 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + I++IGA++ + +R +Q + P S K+ G+ E Sbjct: 124 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELE 182 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P+F + F + +AHNA FD+ F+ +L N + R+IDTL Sbjct: 183 DVVNMPTFEDFSPQLMSFISC--YTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 240 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR + + L +L + + H AL D + + VY + Sbjct: 241 LARRHFETPNHKLITLKDYLNLDN---NSHDALEDCLVTNKVYQYI 283 >gi|255534253|ref|YP_003094624.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium 3519-10] gi|255340449|gb|ACU06562.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium 3519-10] Length = 407 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 89/227 (39%), Gaps = 10/227 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIE+ G + + IIEI + D + F + P + +P KL I+ + Sbjct: 2 YSVIDIESNGAGFRKESIIEIAVYKY-DGHEIVDQFISLVNPES-EITPFVQKLTKISPK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K P F I + +N + HN FD + E +R+ D + +DT+ Sbjct: 60 MVKTAPKFPEIARRVIEI--TRNTILVGHNIDFDYRMLRQEFKRLGYDFTINT--LDTIP 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A++ P L L K GI + + H A D+ D++ +++ + Sbjct: 116 LAKKLIPEAESYSLGKLVKSLGIPLVDQ--HRASGDARATLDLFKLLLIKDKNSEIIQQH 173 Query: 188 NEDRFFKEEKKTVPNISL-LKRDKPLFTRITKEELDEHDKTIQTLGK 233 +E+ K V N++ L + + E + + L K Sbjct: 174 HEESNGKTYLNKVRNLTQDLPAARGIIYMQNAEGKIIYFDFVDDLSK 220 >gi|261416032|ref|YP_003249715.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372488|gb|ACX75233.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326359|gb|ADL25560.1| putative DnaQ family exonuclease/DinG family helicase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 905 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 8/217 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGLD + D IIE+ V + + + P+ + P L GI+ Sbjct: 7 FVALDLETTGLDFEKDEIIEVALVRFENG-EPKENLDFLVKPSAVELRPFIETLTGISKA 65 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ F++I + F + +AHNA FD F+ ++ D D+L+ Sbjct: 66 DLESASDFATIAGQICSFVG--DLPIVAHNAVFDSKFLKQTFTKVGISY-DSHVFWDSLT 122 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN-FGFK 186 ++R + L++L + I S H AL D+ +++K + S ++ + + Sbjct: 123 LSRIAFQDVPNHRLDTLVQELNIERS--RAHRALPDADACGRLFVKALEKISTMDPWIYD 180 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 +T+ + K P + T L+ Sbjct: 181 ALSQVAKGSGYETLFTSKVEKLSPPKYKLPTAPALEA 217 >gi|56460902|ref|YP_156183.1| ribonuclease T [Idiomarina loihiensis L2TR] gi|56179912|gb|AAV82634.1| RNase T, degrades tRNA [Idiomarina loihiensis L2TR] Length = 215 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV--ELLDYSK--TNRTFQVFLCP-NGR 53 + K + R +V D+ET G ++K D ++EI AV + D + + P G Sbjct: 8 LMKQRFRGYMPVVVDVETAGFNAKTDALLEIAAVLLDFDDDGILKPVDSVHYHVKPFEGA 67 Query: 54 KNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 A+ +GI L+ E + Q + + HN+ FD GF Sbjct: 68 NIEQAAIDFNGIDPHCPLRGAVEEGEALRELFKPIRKAQKAAGCQRSVLVGHNSNFDHGF 127 Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A +R + ++P P DT S+A + L C+ GI + H AL D Sbjct: 128 MMAAAERANLKRNPFHPFVSFDTTSLAAMTL--GQTVLIKACQAAGIEFDSKQAHSALYD 185 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + +++Y M+ ++ Sbjct: 186 TERTAELYCWMINRWKELG 204 >gi|163802823|ref|ZP_02196712.1| ribonuclease T [Vibrio sp. AND4] gi|159173363|gb|EDP58186.1| ribonuclease T [Vibrio sp. AND4] Length = 214 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L T + P G Sbjct: 8 LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLSMDDTGNLHPASTIHFHIEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 EAL+ +GI D F L+ S E + ++ A +AHNA FD+ Sbjct: 68 ANLEKEALEFNGIRDPFSPLRGAISEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDL 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+NA +R P P DT +++ + + L CK G+ +R H AL Sbjct: 128 SFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQQTAELFCGIVNKWKALG 206 >gi|307131423|ref|YP_003883439.1| ribonuclease T (RNase T) [Dickeya dadantii 3937] gi|306528952|gb|ADM98882.1| ribonuclease T (RNase T) [Dickeya dadantii 3937] Length = 225 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 22/215 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI AV L + + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAVTLKMDESGWLQPDETLHFHIEPFEGAILRP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF + N +AHNA FD F+ A Sbjct: 73 EALAFNGIDPANPLRGAVSEYEALHEIFKAVRKGIKDLNCNRGIIVAHNATFDHSFLMAA 132 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L C I H AL D+ Sbjct: 133 AERCGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAAEIPFDASQAHSALYDTERT 190 Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKEEK 197 + ++ +++ +GG + G T E+ Sbjct: 191 AQLFCELVNRWKRMGGWPLASGTDTEAPLAVGSEE 225 >gi|206560423|ref|YP_002231187.1| putative exonuclease [Burkholderia cenocepacia J2315] gi|198036464|emb|CAR52360.1| putative exonuclease [Burkholderia cenocepacia J2315] Length = 205 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 30/228 (13%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL DR EI + L D +R FQ + GR+ + + L GIT++ Sbjct: 5 AVLDFETTGLSPNLGDRATEIAVILLRDGEVVDR-FQSLMN-AGRRIPSDVVALTGITND 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S + E F + +AHNA FD F +EL + T+ Sbjct: 63 MIAAAPPASEVMKEAAAFVGKH--AVVAHNAGFDKRFWQSELGLLGMSADHAFA--CTML 118 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR +P +R + L+SL + + S R H A++D+ + ++ ++ Sbjct: 119 VARRIYPDARSHRLSSLIEMLRLPQSGR-AHRAMVDAEMAGHLWCRL------------- 164 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 ++ L + D L +R+ + +++LG+ Sbjct: 165 --------QQDISRTYGLDRIDHALMSRVQATTKAKVPMYLRSLGRAC 204 >gi|37526494|ref|NP_929838.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1] gi|54036329|sp|Q7N3W0|RNT_PHOLL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|36785925|emb|CAE14977.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1] Length = 217 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++K D ++EI AV L + + + P G P AL+ Sbjct: 19 PVVIDVETGGFNAKTDALLEIAAVTLEMDGEGWLTPGESLHFHIEPFEGANLEPAALEFT 78 Query: 64 GITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQRIN- 114 GI L+ S + A +AHNA FD F+ A +R Sbjct: 79 GIDPLNPLRGAVSEYEALHAIFKMVRKGIKNNHCNRAIIVAHNANFDHSFVMAATERTGL 138 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++ + L C GI + H AL D+ ++++ + Sbjct: 139 KRNPFHPFATFDTAALGGLVL--GQTILAKACITAGIPFDNNQAHSALYDTDRTAELFCE 196 Query: 174 MMVGGSQIN 182 M+ Q+ Sbjct: 197 MVNRWKQLG 205 >gi|89073343|ref|ZP_01159867.1| ribonuclease T [Photobacterium sp. SKA34] gi|89050830|gb|EAR56304.1| ribonuclease T [Photobacterium sp. SKA34] Length = 221 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 21/200 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53 K++ R +V D+ET G ++K D ++EI AV + + K T + P G Sbjct: 9 TLKSRFRGYFPVVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGA 68 Query: 54 KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVG 104 EAL +GI D F L+ S E + ++ A +AHNA FD Sbjct: 69 ILHKEALDFNGIRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHS 128 Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ A +R + ++P P DT +++ + L C+ I +R H AL Sbjct: 129 FVMAASERAKLKRNPFHPFATFDTAALSGLAF--GQTVLAKACQTANIPFDNREAHSALY 186 Query: 163 DSHLLSDVYIKMMVGGSQIN 182 D+ ++++ +++ ++ Sbjct: 187 DTERTAELFCEIVNKWKKLG 206 >gi|86144205|ref|ZP_01062541.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Leeuwenhoekiella blandensis MED217] gi|85829335|gb|EAQ47801.1| probable DNA-directed DNA polymerase III (epsilon subunit) [Leeuwenhoekiella blandensis MED217] Length = 458 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG + + E+ + D K F + P R + L GI + Sbjct: 2 YAILDLETTGGKYNEEGVTEVAIYKF-DGHKVVDQFISLVNPE-RPIQAFVVGLTGINNA 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P F + + Q+ +AHNA+FD + E R+ D + + T+ Sbjct: 60 MLRNAPKFYEVAKRIIEI--TQDCIIVAHNAQFDYRILQLEFDRLGYDY--QRKSLCTVE 115 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +A+ P L L + GI I+ R H A D+ ++ ++ Sbjct: 116 LAQELLPGQESYSLGKLVRNLGIPITDR--HRANGDALATVKLFKLLLA 162 >gi|242373764|ref|ZP_04819338.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W1] gi|242348501|gb|EES40103.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W1] Length = 900 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I +E Sbjct: 6 YAVVDLETTGNQLDYDEIIQIGITFVRNQQIID-TYHSMIR-TDLEIPPFIQALTSIEEE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + + ++ ++ ++AHN FD+ FI N P +++DTL Sbjct: 64 MLAQAPYFNEVAEDIYNQI--KDCIFVAHNISFDLNFIKNAFDNCNIQ-FRPKKVMDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + P L+ L + + I +++ H A D+ + + IK + Sbjct: 121 LFKIAFPTDKSYQLSELAQSHNIPLTN--AHRADEDATTTAKLMIKAFEKFENLPL 174 >gi|229816213|ref|ZP_04446523.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM 13280] gi|229808221|gb|EEP44013.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM 13280] Length = 977 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 21/222 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D ETTGL ++ +IEI A L +R F F+ P+G E KL IT+ Sbjct: 48 IVLDTETTGLSHRDSELIEIAAARLRGREIVDR-FDTFVKPSG-LIPEEITKLTSITNVD 105 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + PS + +F +AHNA FD GFI +++ ID+L++ Sbjct: 106 VAHAPSAVDAVASLAEFVG--GCPVVAHNAAFDRGFI----EQVPGGADVSDIWIDSLAL 159 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R P + + L + + +G H A D L V+ ++ G + + G Sbjct: 160 SRIALPRLASHKLAVMAELFGCE---SVSHRANADVEALCGVWRILLCGLADLPAGLM-- 214 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 R + VP +P+F+ + EE D + + Sbjct: 215 --RRLADMHPDVP-----WSYRPIFSFLAAEEPDAVFSLVDS 249 >gi|154496866|ref|ZP_02035562.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC 29799] gi|150273824|gb|EDN00937.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC 29799] Length = 191 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 10/176 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R I FD+ET + NDR+ IG + +++ + + + P R + L GIT Sbjct: 4 RYIAFDVETP--NYANDRMSAIG-ITVVEAGEIAGEYYTLVNPEQR-FDRFNIALTGITP 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + DKP+F ++ E + IAHNA FD+ + L+ R T Sbjct: 60 EMVADKPTFPELWREIGPLMDSG--LLIAHNAPFDMSVLAKCLRDYGICWHPTVRYACTC 117 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++RR P + LN+L G+ + H H A DS ++ + + GG+ + Sbjct: 118 QMSRRLLPQLPNHKLNTLSDYLGLELDH---HHAGSDSMACGEILLYHLRGGASVA 170 >gi|52424757|ref|YP_087894.1| ribonuclease T [Mannheimia succiniciproducens MBEL55E] gi|52306809|gb|AAU37309.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E] Length = 223 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGR 53 + KN+ R ++ D+ET G ++K D ++E+ A+ L ++ + P G Sbjct: 19 LLKNRFRGYYPVIIDVETAGFNAKTDALLELAAITLKMDENGLLVPDQKCHFHIKPFEGA 78 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 +PE++K +GI D L+ S + + Q + +AHNA FD F Sbjct: 79 NINPESIKFNGIDIDNPLRGAVPESEAITGLFQMVRKGQKNAGCQRSIIVAHNATFDQSF 138 Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A R I ++P P DT S++ + L C+ I + H AL D Sbjct: 139 VMAAADRTKIKRNPFHPFSSFDTASLSGLMF--GQTVLVKACQAAHIAFDGKQAHSALYD 196 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ M+ + Sbjct: 197 TERTAELFCYMVNHLKALG 215 >gi|118580761|ref|YP_902011.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379] gi|118503471|gb|ABK99953.1| DNA-directed DNA polymerase [Pelobacter propionicus DSM 2379] Length = 170 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 9/168 (5%) Query: 10 IVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ET+GL + R+IE+ AV L + + L N P A ++HGI E Sbjct: 6 AVVDVETSGLSPRGGGRVIEVAAVLLREGKVVGE-LESLLRVNC-SIHPAAARVHGIGWE 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P ++ F F + +AHNA FD+GFI EL + +R I TL Sbjct: 64 MLRHAPEPEDVWRRFLSFVGRR--PLVAHNAPFDMGFIRHELALLGLPLA--NRSICTLR 119 Query: 129 IARRKHPS-SRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR+ P + + L +L + G H AL D+ L + V++ M Sbjct: 120 MARRRFPELASHRLEALARHLLGSIPEDCRLHRALGDARLAARVWLAM 167 >gi|322388190|ref|ZP_08061794.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus infantis ATCC 700779] gi|321140862|gb|EFX36363.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus infantis ATCC 700779] Length = 816 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + R +V D+E T SK +II++G V + D + + + P+ R + Sbjct: 1 MNFRNNRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVEQ-YATDVNPHER-LDSHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L P FS + + ++ ++ ++AHN +FD + L + P Sbjct: 58 LTGLTDKRLAKAPEFSQVAEKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +A+ +P + +L LC+ GI + H AL D+ +++++ M Sbjct: 115 -RIDTVELAQIFYPQLEKYNLGILCQELGIPLE--QAHSALSDAQATAELFLCM 165 >gi|223040436|ref|ZP_03610710.1| mature parasite-infected erythrocyte surface antigen [Campylobacter rectus RM3267] gi|222878286|gb|EEF13393.1| mature parasite-infected erythrocyte surface antigen [Campylobacter rectus RM3267] Length = 289 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 13/184 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIET+G + +IIEIGA++L + + F+ F+ + +L GIT E Sbjct: 73 FCVVDIETSGG-INSGQIIEIGALKLQNGEIIGK-FETFV--HAPYVPENISELTGITAE 128 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ P+ + + +F F + + ++AHN +FD GFI A L+ + L R + T+ Sbjct: 129 HLKNAPNLAFVMEKFKVFLGQ--SVFVAHNVRFDYGFIGATLEALGYGELLNHR-LCTID 185 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +ARR S + L +L + GI +H H AL D+ ++++ + ++ KT Sbjct: 186 LARRTIASPKYGLGTLKEILGINNAH---HRALSDAIAAAEIFKYSL---QKLPSEVKTT 239 Query: 189 EDRF 192 ED Sbjct: 240 EDLI 243 >gi|154174963|ref|YP_001408508.1| DNA polymerase III subunit epsilon [Campylobacter curvus 525.92] gi|112803051|gb|EAU00395.1| nickel transport permease component NikD [Campylobacter curvus 525.92] Length = 273 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 15/215 (6%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + + DIET+G + +IIEIGA+++ + + R F+ F+ +L GI Sbjct: 73 QQEFCIVDIETSGG-ITSGQIIEIGALKIKNGVEIGR-FESFVDAPF--VPENITQLTGI 128 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + L PS S+ F F + ++AHN FD GFI+ L I L +R + Sbjct: 129 SQSDLTGAPSLKSVLERFKIFLGT--SVFVAHNVNFDYGFISQSLSNIGLGMLL-NRKLC 185 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ ++RR S + L SL + GI +H H AL D+ +++ +K+ + S++ F Sbjct: 186 TIDLSRRTIASQKYGLGSLKELLGINNTH---HRALNDAIAATEI-LKICI--SRLPFSI 239 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 ++ ED KT P++ L + +E Sbjct: 240 QSVEDLI--NFSKTAPSMKLKPEPSLQNSDAIADE 272 >gi|257897430|ref|ZP_05677083.1| DNA polymerase subunit III [Enterococcus faecium Com12] gi|257833995|gb|EEV60416.1| DNA polymerase subunit III [Enterococcus faecium Com12] Length = 291 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL + I++IGA++ + +R +Q + P S K+ G+ E Sbjct: 124 YVVIDFETTGLSPLDSEILQIGAIKYESNEEIDRIYQ-NIKPFRSNISKRITKITGLELE 182 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + + P+F + F + +AHNA FD+ F+ +L N + R+IDTL Sbjct: 183 DVVNMPTFEDFSPQLMSFISC--YTLVAHNAPFDLKFLLHQLNENNIELNQRIRVIDTLP 240 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR + + L +L + + H AL D + + VY + Sbjct: 241 LARRHFETPNHKLITLKDYLNLDN---NSHDALEDCLVTNKVYQYI 283 >gi|333027027|ref|ZP_08455091.1| putative DNA polymerase III [Streptomyces sp. Tu6071] gi|332746879|gb|EGJ77320.1| putative DNA polymerase III [Streptomyces sp. Tu6071] Length = 611 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 11/204 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ET+GL ++ DR++ + V + + F + P P + +HG+T E L Sbjct: 23 VDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDPGC---DPGPVDVHGLTRERLS 79 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P+F I Q+ +AHNA+FD F+ E R + L +R + TL++ R Sbjct: 80 GAPAFDQIAGRLGAML--QDRVLVAHNAQFDYDFLAHEFARA-RLYLPVTRRLCTLALNR 136 Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN--FGFKTN 188 + P +R+ L+SL YG+ + H AL D+ +L+ ++ + ++++ F T Sbjct: 137 QVDPPTRDMKLDSLAAHYGVPRT--RAHDALDDTRVLAGIFRATLREAARLDLPLPFVTC 194 Query: 189 EDRFFKEEKKTVPNISLLKRDKPL 212 R + P R+ Sbjct: 195 PPRQDPQFAPQPPKTPCAYRNPGR 218 >gi|90579159|ref|ZP_01234969.1| ribonuclease T [Vibrio angustum S14] gi|90439992|gb|EAS65173.1| ribonuclease T [Vibrio angustum S14] Length = 221 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 21/200 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53 K++ R +V D+ET G ++K D ++EI AV + + K T + P G Sbjct: 9 TLKSRFRGYFPVVIDVETAGFNAKTDALLEICAVTLQMDEDGWLKPATTIHFHVSPFEGA 68 Query: 54 KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVG 104 EAL +GI D F L+ S E + ++ A +AHNA FD Sbjct: 69 ILHKEALDFNGIRDPFSPLRGAVSEEHALKEIYKQIRKEQKASDCSRAIMVAHNATFDHS 128 Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ A +R + ++P P DT +++ + L C+ I +R H AL Sbjct: 129 FVMAASERAKLKRNPFHPFATFDTAALSGLAF--GQTVLAKACQTANIPFDNREAHSALY 186 Query: 163 DSHLLSDVYIKMMVGGSQIN 182 D+ ++++ +++ ++ Sbjct: 187 DTERTAELFCEIVNKWKKLG 206 >gi|42524627|ref|NP_970007.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] gi|39576837|emb|CAE78066.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100] Length = 276 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 10/177 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + N+ + FD ET+G ++E GAV+ + R Q P + + Sbjct: 5 LPLNEYTYVAFDTETSGAYPVGHDVVEFGAVKWYKGEEVGR-LQFLFKP-REPMTDFIIG 62 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT+E + D P + E +FF + A +AH+A FD+GF+ + ++ L Sbjct: 63 IHGITNEMVADAPLITEKIREIHEFF--KGAIVMAHHAPFDLGFMAIDFEKNQLPLLPEP 120 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV----YIKM 174 + +L + H + L +L + I H A D+ V + KM Sbjct: 121 ALCTSLLSRKWIHGVENHKLQTLVRHLNID--GGQAHRAYDDAKACLHVGLACFAKM 175 >gi|332291057|ref|YP_004429666.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332169143|gb|AEE18398.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 458 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + D + F + P R + L GI + Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKF-DGHQVVDQFITLVNPE-RPIQAFVVGLTGINNG 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D P F I + + +AHNA+FD ++ E R+ + ++ Sbjct: 60 MLTDAPKFHEIAKRIIEI--TEGCIIVAHNAQFDYRILSLEFDRLGYP--YERTTLCSVE 115 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +++ P L L K GI +S+R H A D+ ++ ++ Sbjct: 116 LSQELLPGHDSYSLGKLTKTLGIAMSNR--HRADGDAIATVKLFKLLLE 162 >gi|261416331|ref|YP_003250014.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372787|gb|ACX75532.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325547|gb|ADL24748.1| exonuclease, DNA polymerase III, epsilon subunit family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 215 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 17/183 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKT---NRTFQVFLCPNGRKNSPEAL 60 + + FD+ETTGL ++ D IIEIGAV+ + F + PN EA Sbjct: 7 KFVAFDLETTGLVNRKDEIIEIGAVKFTVEVKNGRVVPKLISEFDTLVKPN-MLIPAEAT 65 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++ ITD+ +++ P +F F + +AHNA FD F+ ++ N Sbjct: 66 NVNHITDKMVENAPPVGEALKQFTAFCGP-GSILLAHNANFDASFLRTAYEQ-NPQFTPG 123 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRY------GITISHRSKHGALLDSHLLSDVYIK 173 + ++D+L+I++ P + + L + + +TI H ++ D +L +V++ Sbjct: 124 NPVVDSLAISKTIMPELANHKLGFMANMFMKRGEISMTIDEEKMHRSVYDCEMLMEVFVA 183 Query: 174 MMV 176 ++ Sbjct: 184 LLR 186 >gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22] gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7) [Streptomyces scabiei 87.22] Length = 613 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 93/230 (40%), Gaps = 26/230 (11%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ET+GL DR++ + + L F L P+ P + +HG+T + L Sbjct: 22 VDVETSGLRPGRDRVLSLSILTLDAQGNQTGEFSTLLNPDC---DPGPVHVHGLTADRLA 78 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P+F I + + + +AHNA+FD F+ E ++ + SR + TL++ R Sbjct: 79 GAPAFEEIAPQVGALLSSR--VLVAHNAQFDYDFLAHEFAQV-RSWAPVSRRLCTLALNR 135 Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 P++ + L +L YG+ H A D +LS + + Q+ Sbjct: 136 LVGPATPDLKLGTLAAHYGVR--QEKAHDAQDDVRVLSGILRGSLSAAEQLGLALPVLGC 193 Query: 191 RFFKEEKKTVPNISLLKRDK-------PLF----------TRITKEELDE 223 ++ + VP R+ PL TR+++EEL Sbjct: 194 PPRQDYRPYVPKTPCAYRNPGRMAPGGPLVQGMKVAITGDTRVSREELVA 243 >gi|266619529|ref|ZP_06112464.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] gi|288868940|gb|EFD01239.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479] Length = 235 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGLD K D+IIEIGAV ++ + F+ F+ P R + L GI D+ Sbjct: 5 YVAVDLETTGLDPKRDKIIEIGAVR-IEAGEITAEFESFVNP-YRMLEAKTRTLTGIRDQ 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P + F +F E + H FD F+ +N+ IDTL+ Sbjct: 63 DVVHAPGIEEVLPVFLNFAGE--LPLLGHRIIFDYSFLKRAA--VNQGESFSRAGIDTLT 118 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR P R +L + C +GI R H A+ D+ +Y M Sbjct: 119 LARLFMPAEERKNLKAACGWFGID--QRETHRAMADAVAAHQLYQAM 163 >gi|228473001|ref|ZP_04057758.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC 33624] gi|228275583|gb|EEK14360.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC 33624] Length = 453 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 9/173 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI D K F + P +K ++L GI+++ Sbjct: 2 YAIIDIETTGGKMGEEAITEIAIYRF-DGQKVTDRFISLINPE-KKIDDFVVRLTGISNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + + ++ +AHNA FD ++ E +R+ D + T+ Sbjct: 60 TVRQAPKFYEVAKRIVEI--TEDCILVAHNASFDYRVLSLEFRRLGFDY--QRSTLCTVE 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +++R P L L + GI + +R H A D+ ++ ++ +Q Sbjct: 116 MSQRLLPDEPSYSLGKLTRSLGIPLLNR--HRANGDAMATVHLFKLLLDRDTQ 166 >gi|284931104|gb|ADC31042.1| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma gallisepticum str. F] Length = 1494 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 13/184 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNR--------TFQVFLCPNG 52 ++ +K+ ++FDIETTGL++ ++IIEI AV + + ++TN F+ + Sbjct: 403 LKLDKLSFVIFDIETTGLNAYYEQIIEIAAVRVKAELNETNHQLEFVQLGKFEKLIKNE- 461 Query: 53 RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQ 111 + S +L G+ D LKD ++ EF +F +++ +AHN FD +IN +L Sbjct: 462 KPLSKFTTQLTGLKDSDLKDAQDEKTVLEEFANFI-QKDDVLVAHNGIDFDFIWINTKLD 520 Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + PLD + ++D+L +A + + R L +L + G H A D+ LL+ Sbjct: 521 KYKLKPLD-NPMLDSLRLAYQLYQFKRYTLENLSLKLGYEYDKTLAHRANYDTELLAKCL 579 Query: 172 IKMM 175 + M+ Sbjct: 580 MIML 583 >gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] Length = 611 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 9/203 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ET+GL + R++++ ++ R++ L P P + +HG+T E Sbjct: 22 YAVVDVETSGLSPTHHRVLQVAVTQVEPDGALGRSWSSLLDPG---VDPGPVHVHGLTRE 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + + + ++ +AHNA+FD GF+ AE R + PL R + TL+ Sbjct: 79 RLAGAPQYQDVAGTLDELVRDR--VLVAHNARFDWGFLAAESDRA-RAPLSVDRRLCTLA 135 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++RR P S L ++ +G+ R H A D +L +V + ++ Sbjct: 136 LSRRLDLPVSDLRLATVAAHWGVQ--QRRAHDAEDDVRVLVEVLRHSLAAADRLGMTLPV 193 Query: 188 NEDRFFKEEKKTVPNISLLKRDK 210 + + + + Sbjct: 194 AACGPGEPSARDGGPVRPSPSPR 216 >gi|254786953|ref|YP_003074382.1| ribonuclease T [Teredinibacter turnerae T7901] gi|237685615|gb|ACR12879.1| ribonuclease T [Teredinibacter turnerae T7901] Length = 211 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVE--LLDYS--KTNRTFQVFLCP-NGRKNSP 57 R ++ D+ET G ++ D ++EI AV + D + + TF + P G Sbjct: 14 RFRGFLPVIIDVETGGFNAATDALLEIAAVTLHMDDNGFLQRDETFSFHVEPFEGANIEK 73 Query: 58 EALKLHGIT-----DEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 AL+ GI E + + + IF+ + HNA FD+ F+NA Sbjct: 74 AALEFTGIDLESEDREAVPEAIALGDIFAGVRKAVKGYGCNRAVLVGHNAHFDLNFLNAA 133 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 R I ++P P DT ++ L + CK G+ S+R H A D+ Sbjct: 134 AARSDIKRNPFHPFSCFDTATLCGLIF--GHTVLATSCKLAGLEFSNREAHSAAYDAEKT 191 Query: 168 SDVYIKMMVGGSQIN 182 +D++ M+ + Sbjct: 192 ADLFCLMVNKWKALG 206 >gi|163754237|ref|ZP_02161360.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] gi|161326451|gb|EDP97777.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1] Length = 457 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 12/172 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG ++++I EI + D F + PN L GI + Sbjct: 7 YTIIDVETTG---RSNKITEIS-IFKFDGETIVDEFTSLVNPN-VLIPTHITALTGIDNA 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F+ I E +++ ++AHN FD I E + I+ D + + T+ Sbjct: 62 MVADAPTFAEIAKEVLSI--TKDSIFVAHNVNFDYNVIRNEFKAIDLDF--RRKKLCTVR 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 ++R P L LCK I IS R H A D+ ++ ++ + Sbjct: 118 LSRALIPGFKSYSLGKLCKSLNIHISDR--HRARGDAAATVILFQLLLTKDA 167 >gi|169830753|ref|YP_001716735.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis audaxviator MP104C] gi|169637597|gb|ACA59103.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis audaxviator MP104C] Length = 921 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 13/192 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGLD + D I+E+G V + D K F + P+ R L G+ D Sbjct: 5 FVVLDLETTGLDPQADEIVEVGLVRVEDG-KPGAVFHALVRPS-RPLPARIKSLTGLDDA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L ++P +S + F + + H+ FD+ F+ ++ DT+ Sbjct: 63 DLAERPDWSEVRPAVTAFLGNE--PVVGHHVHFDLAFLERHA------GYRATQAYDTVD 114 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P L LC + + R H A+ D+ + ++ ++ ++ F + Sbjct: 115 LARLVLPGLPSYRLELLCAH--LDLPERPGHRAMEDARAAAGLFTALLERFCRLEFTTQA 172 Query: 188 NEDRFFKEEKKT 199 R + + Sbjct: 173 TVHRILSQTPGS 184 >gi|91785922|ref|YP_546874.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666] gi|91695147|gb|ABE41976.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666] Length = 203 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 10/168 (5%) Query: 7 MRKI-VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 M+ I V D ETTGL DR E+ V L++ + FQ + G + L G Sbjct: 1 MKPIAVIDFETTGLSPAMGDRATEVAIV-LVEGGRVVDRFQSLMN-AGVRIPAFITSLTG 58 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+ + P +++ ++ F NA +AHNA FD F AEL R + P Sbjct: 59 ITNAMVASAPDAATVMTDANRFVG--NAPLVAHNASFDRKFWEAELSRAGERASQPFA-- 114 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 T+ ++RR +P + L L + + + R H AL D+ + + + Sbjct: 115 CTMLVSRRLYPQAPSHKLGVLVDYHHLPKAGR-AHRALADAEMAASLL 161 >gi|294660232|ref|NP_852876.2| DNA polymerase III subunit alpha polC/Gram positive-type [Mycoplasma gallisepticum str. R(low)] gi|284811887|gb|AAP56444.2| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma gallisepticum str. R(low)] gi|284930337|gb|ADC30276.1| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma gallisepticum str. R(high)] Length = 1494 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 13/184 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT---------FQVFLCPNG 52 ++ +++ ++FDIETTGL++ ++IIEI AV + F+ + N Sbjct: 403 LKLDQLSFVIFDIETTGLNAYYEQIIEIAAVRVKAELNVTNHQLEFVQIGKFEKLIK-NK 461 Query: 53 RKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQ 111 + S +L G+ D LKD ++ EF +F +++ +AHN FD +IN +L Sbjct: 462 KPLSKFTTQLTGLKDSDLKDAQDEKTVLEEFVNFI-QKDDVLVAHNGIDFDFIWINTKLD 520 Query: 112 RINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + PLD + ++D+L +A + + R L +L + G H A D+ LL+ Sbjct: 521 KYKLKPLD-NPMLDSLRLAYQLYQFKRYTLENLSLKLGYEYDKTLAHRANYDTELLAKCL 579 Query: 172 IKMM 175 + M+ Sbjct: 580 MIML 583 >gi|238753629|ref|ZP_04614991.1| Ribonuclease T [Yersinia ruckeri ATCC 29473] gi|238708181|gb|EEQ00537.1| Ribonuclease T [Yersinia ruckeri ATCC 29473] Length = 217 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++K D ++EI AV L + + + T + P G PEAL + Sbjct: 19 PVVIDVETAGFNAKTDALLEIAAVTLKMDENGWLQRDETLHFHVEPFEGANLQPEALAFN 78 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI + + + +IF ++ +AHNA FD F+ +R + Sbjct: 79 GIDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFVMEAAERACL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI H AL D+ ++++ + Sbjct: 139 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSTQAHSALYDTEQTAELFCE 196 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 197 LVNRWKRLG 205 >gi|291527626|emb|CBK93212.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium rectale M104/1] Length = 260 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 9/173 (5%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 N V D+E TGL +KND+IIEIGA + + T + P +L G Sbjct: 21 NIKNYTVIDLEMTGLSAKNDKIIEIGAARVR-GGEIVDTISTLVNPKQH-IPQRVQELTG 78 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 ITD +++ DF + + N FD F+ + + Sbjct: 79 ITDSDVENAADMDVAVDNLLDFIGDD--IILGQNVTFDYSFLKQWAVNHKRTLSLNA--Y 134 Query: 125 DTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 DTL IAR+ P+ ++ L LC+ + +S + H AL D+ ++ K++ Sbjct: 135 DTLKIARKCLPAEQSKKLEDLCEYF--DVSRENAHRALDDAIETKQIFEKLLA 185 >gi|256390076|ref|YP_003111640.1| exonuclease RNase T and DNA polymerase III [Catenulispora acidiphila DSM 44928] gi|256356302|gb|ACU69799.1| Exonuclease RNase T and DNA polymerase III [Catenulispora acidiphila DSM 44928] Length = 204 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 7/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ET+G I+E+ V + + ++ L P G A ++HGIT E Sbjct: 12 YAVVDVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLLRPQGGV---GATRVHGITRE 68 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + E ++ +AHN FD F+ + R+ + + TL Sbjct: 69 MVEPAPRFEDVGMELHGLLVDR--VVVAHNLAFDAKFLVTQFARLGVHSPEIAGGACTLR 126 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++ P L C+ G+ ++ H AL D+ + + Sbjct: 127 TSQAMLPGPSYKLLDCCEAVGVELTD--AHSALGDALATARLL 167 >gi|225012865|ref|ZP_03703298.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium MS024-2A] gi|225002987|gb|EEG40964.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium MS024-2A] Length = 458 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 9/160 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + + K F + P ++ P KL GI + Sbjct: 2 YAILDIETTGGKYDEEGITEIAIYKY-NGQKVVDQFSSLINPQ-KEIQPFVEKLTGINSK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + + ++ +AHNA FD + E +R+ + I T+ Sbjct: 60 MLRSAPKFYEVAKRIVEL--TEDCILVAHNASFDYRILQTEFRRLGFPF--ERKSICTVE 115 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167 ++++ P L L + GI S + H A D+ + Sbjct: 116 LSQKLLPDEPAYSLGKLVRSLGIPFSDQ--HRAHGDAKVT 153 >gi|224541223|ref|ZP_03681762.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM 15897] gi|224525868|gb|EEF94973.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM 15897] Length = 212 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 56/183 (30%), Positives = 79/183 (43%), Gaps = 21/183 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP-------------NGRKN 55 IV DIE TGL+ + +R+IE+ A++ +++ + R F + P Sbjct: 15 YIVVDIEATGLNPETERLIEVAAIKYINHKEVAR-FSELINPLRDQLPVDLLDKDKTIYI 73 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 S L GI++ L D + E+ F N I HN +FD+ FI L R + Sbjct: 74 SDFIENLTGISNRMLHDARGEKDVLREYIKFIG--NDVIIGHNVRFDIRFIYDALLR-DY 130 Query: 116 DPLDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L + IDTL IAR+ R L L Y I SH H A+ D + DVY Sbjct: 131 GVLFQNDYIDTLKIARKLLHEDLKRYRLKDLADHYHIDYSH--AHRAVNDCEITHDVYEM 188 Query: 174 MMV 176 MM Sbjct: 189 MME 191 >gi|90410853|ref|ZP_01218868.1| ribonuclease T [Photobacterium profundum 3TCK] gi|90328484|gb|EAS44782.1| ribonuclease T [Photobacterium profundum 3TCK] Length = 223 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 21/200 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53 K++ R +V D+ET G +SK D ++EI AV + + K T + P G Sbjct: 9 TLKSRFRGYFPVVIDVETAGFNSKTDALLEICAVTLQMDEDGWLKPASTIHFHVAPFEGA 68 Query: 54 KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVG 104 EAL+ +GI D F L+ S + E + ++ A +AHNA FD Sbjct: 69 VLHKEALEFNGIRDPFSPLRGAVSEETALKEIYKQIRKEQKAADCSRAIMVAHNANFDHS 128 Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ +R + ++P P DT +++ + L CK G+ ++ H AL Sbjct: 129 FVMEASERARLKRNPFHPFATFDTAALSGLAF--GQTVLAKACKTAGVAFDNKEAHSALY 186 Query: 163 DSHLLSDVYIKMMVGGSQIN 182 D+ ++++ +++ ++ Sbjct: 187 DTERTAELFCEIVNKWKKLG 206 >gi|315127223|ref|YP_004069226.1| ribonuclease T [Pseudoalteromonas sp. SM9913] gi|315015737|gb|ADT69075.1| ribonuclease T [Pseudoalteromonas sp. SM9913] Length = 224 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA-VELLDYSK---TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G + + D ++EI A V +D + T + P G A++ + Sbjct: 18 PVVIDVETAGFNKETDALLEIAASVLKMDDEGLLSIDHTVHFHVQPFEGANIEQAAIEFN 77 Query: 64 GITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQR--I 113 GI L+ E Q + +AHNA FD GF+NA ++R I Sbjct: 78 GIEPFSALRGAVPEEEAIKEICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERNNI 137 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT S+A + L C+ GI ++ H AL D+ +++Y Sbjct: 138 KRTPFHPFVSFDTTSLAGLAL--GQTVLAKACRAAGIEFDNKQAHSALYDTERTAELYCL 195 Query: 174 MMVGGSQIN 182 ++ Q+ Sbjct: 196 IVNRWQQLG 204 >gi|213962688|ref|ZP_03390949.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena Capno] gi|213954683|gb|EEB66004.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena Capno] Length = 442 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + ++ T++ F + P R KL GI ++ Sbjct: 2 YAILDIETTGGKYDEEGITEIAIYQFDGHTITDQ-FISLINPE-RPIQDYVTKLTGINNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P F I + + + HNA FD + E +R+ + + + + T+ Sbjct: 60 MLRNAPKFYEIAKRIVEI--TEGCIIVGHNAAFDYRILQTEFRRLGYEYIKTT--LCTVE 115 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++++ P L L + GI +S R H A D+ +++ ++ Sbjct: 116 LSQQLIPDKESYSLGKLVRSLGIPMSER--HRASGDAMATLNLFKYLLE 162 >gi|307706367|ref|ZP_07643179.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK321] gi|307618285|gb|EFN97440.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis SK321] Length = 816 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLVQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +A+ P + L LC+ GI + H H AL D+ +++ + + +Q+ G Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMAQLPKGL 176 >gi|282890349|ref|ZP_06298877.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499731|gb|EFB42022.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 249 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 85/234 (36%), Gaps = 15/234 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K + D ETTGLD DRIIE+ AV + + F+ + P ++ Sbjct: 1 MSLLEKATFVCIDCETTGLDVHADRIIEV-AVARFTFDQILEQFESLINPEC-PIPESSI 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LD 119 ++H IT E + DKP + + + D + H FD+ I +R + Sbjct: 59 QIHHITAEMVADKPPITQVIPQILDAVRSH--TIVGHGVLFDIELIAVAAERAGIPCSIR 116 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + +DTL +AR S N L L + I H A+ D + +V+ + Sbjct: 117 QNPYLDTLRLARLYGESPINSLEQLRMHFNIQFEG--AHRAMSDVLVNIEVFKHLAKRYK 174 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL--DEHDKTIQTL 231 + F+ + + L K I + L H Q L Sbjct: 175 TTDNLFQILSKPIL------LRCMPLGKHKGRSLKEIPLDYLKWAAHKNFDQDL 222 >gi|261253571|ref|ZP_05946144.1| ribonuclease T [Vibrio orientalis CIP 102891] gi|260936962|gb|EEX92951.1| ribonuclease T [Vibrio orientalis CIP 102891] Length = 218 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G ++K D ++EI AV L + T + P G Sbjct: 8 LTLKKRFRGYFPVVIDVETAGFNAKTDALLEICAVTLKMDENGDLAPASTIHFHVEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 EAL+ +GI D F L+ + + E + ++ A +AHNA FD Sbjct: 68 ANLEKEALEFNGIRDPFSPLRGAVTEAEALKEIYKLVRKEQKAADCSRAIMVAHNATFDH 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ +R P P DT +++ + + L CK G+ ++ H AL Sbjct: 128 SFVMEASERCKLKRVPFHPFATFDTAALSGLAY--GQTVLAKACKTAGMDFDNKEAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQKTAELFCGIVNKWKALG 206 >gi|315103201|gb|EFT75177.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA2] Length = 658 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 88 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-SIPASVQVLT 144 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD ++ PS +++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 145 GITDVMVRSAPSLNAVLPSWSEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWDDPA-V 201 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 202 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 257 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 258 GNLGVTTLEDLL 269 >gi|268611881|ref|ZP_06145608.1| hypothetical protein RflaF_20541 [Ruminococcus flavefaciens FD-1] Length = 176 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 9/174 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ET + NDR+ IG + D F + P +S +L GI E Sbjct: 4 YIVFDVETP--NHANDRMSAIGITAVKDNKIVANYFS-LVDPETHFDS-FNTQLTGIDAE 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P+F+ ++ + ++ +AHNA FD+ + + L+ + + T+ Sbjct: 60 KVKDAPNFAELWKKIEPIMSKG--ILVAHNAVFDMSVLRSCLRSYGITWKPTAEYLCTVQ 117 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 I RR P+ +++LN +C YGI + H H A D+H +++ ++ M G ++ Sbjct: 118 IGRRVLPNMKHNLNVMCDHYGIALDH---HQADSDAHACAEILLRYMESGVDVS 168 >gi|262393711|ref|YP_003285565.1| ribonuclease T [Vibrio sp. Ex25] gi|262337305|gb|ACY51100.1| ribonuclease T [Vibrio sp. Ex25] Length = 214 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L T + P G Sbjct: 8 LTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLKMDEDGVLHPASTIHFHVEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 EAL+ +GI D + L+ S E + ++ A +AHNA FD+ Sbjct: 68 ANLEKEALEFNGIRDPYSPLRGAVSEQEALKEIYKLIRKEQKAADCSRAIMVAHNAAFDL 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 GF+NA +R P P DT +++ + + L CK G+ +R H AL Sbjct: 128 GFVNAANERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQKTAELFCGIVNKWKALG 206 >gi|238917782|ref|YP_002931299.1| DNA polymerase [Eubacterium eligens ATCC 27750] gi|238873142|gb|ACR72852.1| DNA polymerase [Eubacterium eligens ATCC 27750] Length = 233 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 75/168 (44%), Gaps = 9/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + DIETTGL+ DRIIE+G + D T + + + P G S +L GI + Sbjct: 4 RYVALDIETTGLNPAVDRIIEVGMARVEDGQIT-QKYSTLVYP-GISVSERITELTGIHN 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L KP I E +F + + HN FD F+ +N IDTL Sbjct: 62 EELTGKPRIEDIIGEITEFIG--DWPVLGHNVIFDFSFLKKAA--VNNGLTINDDGIDTL 117 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR P + L+ LC+ + I H A D+ S +Y K+ Sbjct: 118 KLARRILPEVEHKSLSFLCQYFNIDP--GRSHRAYDDAVSASLLYAKL 163 >gi|329946892|ref|ZP_08294304.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526703|gb|EGF53716.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 552 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 12/211 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + +V D+ETTG + EIGAV+ F + P G + Sbjct: 15 TPLKRATFVVVDLETTGGAPGAQALTEIGAVKARGGQVLTDFF-TLVNP-GVAIPAQITM 72 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDF--FNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L GIT+ + P + F D+ + +AHNA+FDVG + + + + Sbjct: 73 LTGITNAMVAGAPGVRTCVEAFLDWADLLAGDVVLVAHNARFDVGHLRGAAAALGLEWPE 132 Query: 120 PSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 P R++DTL++AR+ + L +L G R H AL D+ DV + Sbjct: 133 P-RVLDTLALARKAWTRSEVPNHKLGTLAAFVG--SQTRPTHRALDDACATVDVLHAALE 189 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLK 207 + + G ED + V + + Sbjct: 190 VMAPL--GVTHLEDLATASDPVPVRRRAKSR 218 >gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 484 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 10/179 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D+ETTG DRI EI + + T + + P R P +L GI DE Sbjct: 44 AIVDLETTGGSFDTDRITEIAFLRFDGGTVT--PYHSLVHPE-RPIPPFIRRLTGIGDET 100 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P FS++ E + +AHN+KFD F+ R P+ + T+ + Sbjct: 101 VAGAPPFSALAHELLPLL--RGCILLAHNSKFDYTFLRRAFARCGLPFAAPT--LCTVQL 156 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +RR +P ++ L S+ +R+GI + R H A D ++D + F Sbjct: 157 SRRLYPQFYKHSLESIIERHGIAAASR--HRATDDVLAVADYLETALREQGSETFAAHA 213 >gi|319649890|ref|ZP_08004041.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2] gi|317398470|gb|EFV79157.1| hypothetical protein HMPREF1013_00645 [Bacillus sp. 2_A_57_CT2] Length = 242 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 8/183 (4%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 I + VFDIETTG K D+II IGAV+++ + +F + S E Sbjct: 51 IPFGNLNVAVFDIETTGFYPDKGDQIISIGAVKIIKGKVSEDSFYSLARFE-KPLSNEIK 109 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+++ L+ P S + F +F ++ +AH+A + F+ ++ + P Sbjct: 110 ELTGLSEADLEKAPPLSEVLISFLEFV--KDMPLVAHHANHEKSFMQHSCWKLFRTPF-K 166 Query: 121 SRIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 RI+DT + R H S L LC+ Y I + R H AL D+ L + ++ +++ Sbjct: 167 YRILDTSFLYRIADHNKSFWRLEDLCEFYSIPVKDR--HHALGDAKLTALLWCRLIEEVH 224 Query: 180 QIN 182 ++ Sbjct: 225 KLG 227 >gi|319939450|ref|ZP_08013810.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV] gi|319811436|gb|EFW07731.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV] Length = 819 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 92/174 (52%), Gaps = 10/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + K + V D+E T S N +II++G V L++ + +T++ + P+ K + Sbjct: 1 MTQEKRKYAVVDLEATSASS-NAKIIQVGIV-LIENGQIVKTYETDVNPH-EKLDSHICQ 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ L+ P FS + E ++ ++A ++AHN KFD + L + + P Sbjct: 58 LTGLTDKRLRRAPDFSQVAREIYELI--EDAIFVAHNVKFDANLLAEALFWEGFELVTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ P+ + +L LC++ I + H H AL D+ + +++K+ Sbjct: 115 -RVDTVELAQVFFPTFEKYNLGILCEQLDIPLKH--AHTALADASATATLFLKI 165 >gi|315224304|ref|ZP_07866138.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga ochracea F0287] gi|314945694|gb|EFS97709.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga ochracea F0287] Length = 442 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I +I A+ + + F + P R KL GI ++ Sbjct: 2 YAILDIETTGGKYNEEGITDI-AIYQFNGHEITDQFISLINPE-RPIQEFVTKLTGINNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P F + + + + HNA FD + E +R+ D + + + T+ Sbjct: 60 MLRNAPKFYEVAKRIVEI--TTDCIIVGHNAAFDYRILQTEFRRLGYDFVRTT--LCTVE 115 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ R P+ L L + GI +S R H A D+ ++ ++ Sbjct: 116 LSERLIPNKESYSLGKLVRSLGIPVSDR--HRASGDALATLKLFKYLLE 162 >gi|237750780|ref|ZP_04581260.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879] gi|229373225|gb|EEO23616.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879] Length = 268 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 8/170 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I N+ + DIETT KN +IIEIGA+ + + TF + + + Sbjct: 73 INLNEAKLCFVDIETTSASVKNGQIIEIGAIIAQNG-EILDTFDTLV--YSPFVPEDIID 129 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GI L+D P + +F F ++ ++AHN FD FI L + PL Sbjct: 130 LTGIDSYMLEDAPRLEQVLKQFRAFLG--DSVFVAHNVSFDYNFIAESLHEYDMPPLFNP 187 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R + TL ++RR S + L L GI + H A D+ +Y Sbjct: 188 R-LCTLDLSRRTIVSKKYALAYLNDMLGINTA--QAHRAYADALTAFRLY 234 >gi|312867475|ref|ZP_07727684.1| putative ATP-dependent DNA helicase DinG [Streptococcus parasanguinis F0405] gi|311097176|gb|EFQ55411.1| putative ATP-dependent DNA helicase DinG [Streptococcus parasanguinis F0405] Length = 817 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 91/187 (48%), Gaps = 14/187 (7%) Query: 2 IRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 + + K + + D+E T G ++K II++G V + D T ++++ + P+ R Sbjct: 1 MTRQKRKYAIVDLEATSAGSNAK---IIQVGIVIVEDGVIT-QSYETDVNPHER-LDEHI 55 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L G+TD L+ P F+ + E ++ ++A ++AHN KFD + L + Sbjct: 56 KQLTGLTDARLRKAPEFAQVAKEIFELI--EDAVFVAHNVKFDANLLAEALFWEGFELTT 113 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 P IDT+ +++ +P+ R +L +L I + H H AL D+ + + +K+ Sbjct: 114 P--RIDTVELSQIFYPTLERYNLGALAAELQIELHH--AHSALADAMATAQLLLKVREKI 169 Query: 179 SQINFGF 185 + + G Sbjct: 170 ASLPRGL 176 >gi|219849043|ref|YP_002463476.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM 9485] gi|219543302|gb|ACL25040.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM 9485] Length = 934 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 15/205 (7%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N + D+ETTGL S D IIE+ AV +R F+ + P + + +L Sbjct: 1 MNNRIYVAIDVETTGLQSGLDEIIEVAAVTFRGRDILDR-FERLVRP-RQSVPLKITRLT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI L P F+ I ++ F + + H+ FD+ + A+ N I Sbjct: 59 GIDPAALAQAPRFNEIGADLARFIGNR--PIVGHSIGFDLMMLRAQGMNFN------QPI 110 Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 DT +A P + L++L R GI H H AL D+ + + ++ ++ + Sbjct: 111 YDTFELATLLLPQATSYKLSALAARLGIP--HPDAHRALNDAEVAAQLFA--VLSERMLQ 166 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLK 207 T + K +P L + Sbjct: 167 LDLATLGEMVRLMSKIGLPLRDLFE 191 >gi|218461621|ref|ZP_03501712.1| DNA polymerase III subunit epsilon [Rhizobium etli Kim 5] Length = 115 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 62/116 (53%), Positives = 82/116 (70%), Gaps = 2/116 (1%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR+I+FD ETTGLD++ DRIIEIG +EL ++ T T +++ P +K P+AL +HGIT Sbjct: 1 MREIIFDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 DEFLKDK +F+ + E FF +A+WIAHNA FD+GFINAE RI P+ P R Sbjct: 61 DEFLKDKKAFAEVAEEILAFFG--DAKWIAHNATFDMGFINAEFARIGLPPILPER 114 >gi|166240304|ref|XP_001733024.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4] gi|165988531|gb|EDR41046.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4] Length = 483 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 5/176 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R I FD+ET+G+ S +D IIEIGAVEL+D +T FQ + P + P + + Sbjct: 294 IPIKKGRVICFDLETSGVTS-SDTIIEIGAVELIDGCRTGVIFQSYAQPK-AQIHPVSEQ 351 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H +T L P I + F D+ N+ +AHN FD + EL R N Sbjct: 352 IHQLTSLQLMSAPPIEIILASFMDWVG--NSPLVAHNLAFDKRILIQELIRYNIPFNIDH 409 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMMV 176 T+ ++ + L+S+ ++ I + R HGAL+DS +L+ +Y +++ Sbjct: 410 ICFCTMKYFKKIYNGLNYSLDSISQKLKINKLLLRKTHGALIDSEILAIIYTHLLI 465 >gi|221140978|ref|ZP_03565471.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751286|gb|ADL65463.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 897 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKKVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|169832144|ref|YP_001718126.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis audaxviator MP104C] gi|169638988|gb|ACA60494.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis audaxviator MP104C] Length = 247 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 9/170 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEA 59 + +K+R +V D ETTG + D +I +GAV + + + + F + P GR P Sbjct: 48 MPLSKLRFVVLDTETTGFEPAGGDEVIALGAVVVKNGRPRPEQVFHRLVNP-GRSIPPLV 106 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L GI+DE + + ++ F +F H+ FD+ F+N L+ + + Sbjct: 107 TALTGISDEAVAGEDDLVAVLPCFLEFLGNDC--LAGHHLGFDLEFLNLRLREFSGAAI- 163 Query: 120 PSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168 + +DT IAR +P+ + L+++ +GI + R H AL D+ L + Sbjct: 164 RNPALDTAVIARALYPALKYFSLDAMLSFHGIEPAGR--HTALGDAWLTA 211 >gi|50842208|ref|YP_055435.1| hypothetical protein PPA0720 [Propionibacterium acnes KPA171202] gi|50839810|gb|AAT82477.1| DNA polymerase III epsilon subunit (3'-5' exonuclease) [Propionibacterium acnes KPA171202] gi|314923288|gb|EFS87119.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL001PA1] gi|315107037|gb|EFT79013.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA1] Length = 633 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 63 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-SIPASVQVLT 119 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD ++ PS +++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 120 GITDVMVRSAPSLNAVLPSWSEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWDDPA-V 176 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 177 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 232 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 233 GNLGVTTLEDLL 244 >gi|240144403|ref|ZP_04743004.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] gi|257203586|gb|EEV01871.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis L1-82] Length = 235 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 9/200 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+E TGL++K D I+E+GAV + ++ ++ + K + +L GIT+ Sbjct: 4 YVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDKFGA--ILCQNVKIPEKVTELTGITEA 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +F++F E + N FD GF+ N +DTL Sbjct: 62 MVQGGMEKEEAMRQFFEFIGED--IIVGQNVIFDYGFLKQWAVNHNMPL--ERSAVDTLK 117 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR+ P + DL SLC +G+ + H A D++ +Y + + + G Sbjct: 118 LARKFLPKEQKKDLESLCAYFGVKREN--AHRAFDDAYETWQIYEALRERYEEESAGDFM 175 Query: 188 NEDRFFKEEKKTVPNISLLK 207 + +K +K+T +K Sbjct: 176 PKPLLYKAKKQTPATARQIK 195 >gi|270261613|ref|ZP_06189886.1| ribonuclease T [Serratia odorifera 4Rx13] gi|270045097|gb|EFA18188.1| ribonuclease T [Serratia odorifera 4Rx13] Length = 226 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 22/202 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V DIET G ++K D ++EI AV + + + + T + P G P Sbjct: 24 RFRGFYPVVIDIETAGFNAKTDALLEIAAVTLKMDEEGWLQQDETLHFHVEPFEGANLQP 83 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF ++ +AHNA FD F+ A Sbjct: 84 EALAFNGIDPHNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAA 143 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L C I H AL D+ Sbjct: 144 AERASLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAADIPFDSTQAHSALYDTEQT 201 Query: 168 SDVYIKMM-----VGGSQINFG 184 + ++ +++ +GG + G Sbjct: 202 AQLFCELVNRWKRLGGWPLAIG 223 >gi|307545334|ref|YP_003897813.1| ribonuclease T [Halomonas elongata DSM 2581] gi|307217358|emb|CBV42628.1| ribonuclease T [Halomonas elongata DSM 2581] Length = 221 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 24/210 (11%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D I+EI AV + + T+ + P G Sbjct: 13 RFRSFLPVVVDLETGGFNAKGDAILEIAAVTLTMDPEGNLMPDATYAYHVTPFEGANVEQ 72 Query: 58 EALKLHGITDEF-------LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107 AL GI + + + + IF + HNA FD GF+N Sbjct: 73 SALDFTGIRLDDPLRRQVAVSEAEALGEIFRPVRKAIKAHGCTRAILVGHNAAFDHGFLN 132 Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A ++R ++P P DT S+A + + L C+ GI + + H A D+ Sbjct: 133 AAVERCAIKRNPFHPFSSFDTASLAGLIY--GQTVLARACRAAGIEFDNGAAHSARYDTE 190 Query: 166 LLSDVYIKMM-----VGGSQINFGFKTNED 190 ++++ M+ +GG ++ + E+ Sbjct: 191 RTAELFCAMINRYKDLGGWRLAQREQGVEE 220 >gi|302333066|gb|ADL23259.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus JKD6159] Length = 897 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKKVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|291540867|emb|CBL13978.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis XB6B4] Length = 235 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 9/200 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+E TGL++K D I+E+GAV + ++ ++ + K + +L GIT+ Sbjct: 4 YVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDKFGA--ILCQNVKIPEKVTELTGITEA 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +F++F E + N FD GF+ N + +DTL Sbjct: 62 MVQGGMEKEEAMRQFFEFIGED--IIVGQNVIFDYGFLKQWAVNHNMPLERNA--VDTLK 117 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR+ P + DL SLC +G+ + H A D++ VY + + + G Sbjct: 118 LARKFLPKEQKKDLESLCACFGVKREN--AHRAFDDAYETWQVYEALRERYEEESAGDFM 175 Query: 188 NEDRFFKEEKKTVPNISLLK 207 + +K +K+T + +K Sbjct: 176 PKPLLYKAKKQTPATVRQIK 195 >gi|282916722|ref|ZP_06324480.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus D139] gi|282319209|gb|EFB49561.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus D139] gi|298694746|gb|ADI97968.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus ED133] gi|323439542|gb|EGA97263.1| ATP-dependent DNA helicase [Staphylococcus aureus O11] Length = 897 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKKVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|21283074|ref|NP_646162.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus MW2] gi|49486295|ref|YP_043516.1| hypothetical protein SAS1398 [Staphylococcus aureus subsp. aureus MSSA476] gi|253732097|ref|ZP_04866262.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733298|ref|ZP_04867463.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus TCH130] gi|297207885|ref|ZP_06924318.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911970|ref|ZP_07129413.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus TCH70] gi|81827855|sp|Q6G9A7|DING_STAAS RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81847815|sp|Q8NWP2|DING_STAAW RecName: Full=Probable ATP-dependent helicase dinG homolog gi|21204514|dbj|BAB95210.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus MW2] gi|49244738|emb|CAG43174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253724144|gb|EES92873.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728838|gb|EES97567.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus TCH130] gi|296887459|gb|EFH26359.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886216|gb|EFK81418.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus TCH70] Length = 897 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKKVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|15924445|ref|NP_371979.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|15927036|ref|NP_374569.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus N315] gi|57650410|ref|YP_186339.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus COL] gi|87161026|ref|YP_494043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195189|ref|YP_499990.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267941|ref|YP_001246884.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus JH9] gi|150394004|ref|YP_001316679.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus JH1] gi|151221578|ref|YP_001332400.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|161509623|ref|YP_001575282.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253315964|ref|ZP_04839177.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006242|ref|ZP_05144843.2| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795489|ref|ZP_05644468.1| DnaQ family protein [Staphylococcus aureus A9781] gi|258413298|ref|ZP_05681574.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9763] gi|258420595|ref|ZP_05683537.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9719] gi|258426791|ref|ZP_05688011.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9299] gi|258444789|ref|ZP_05693118.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8115] gi|258447377|ref|ZP_05695521.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6300] gi|258449738|ref|ZP_05697839.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6224] gi|258451113|ref|ZP_05699148.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5948] gi|258454593|ref|ZP_05702557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5937] gi|269203080|ref|YP_003282349.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus ED98] gi|282892951|ref|ZP_06301186.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8117] gi|282927982|ref|ZP_06335591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A10102] gi|284024454|ref|ZP_06378852.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus 132] gi|294848419|ref|ZP_06789165.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9754] gi|295407205|ref|ZP_06817005.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8819] gi|296275347|ref|ZP_06857854.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus MR1] gi|297244629|ref|ZP_06928512.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8796] gi|304380963|ref|ZP_07363621.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81832505|sp|Q7A5K4|DING_STAAN RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81855933|sp|Q99U34|DING_STAAM RecName: Full=Probable ATP-dependent helicase dinG homolog gi|81859586|sp|Q5HFW8|DING_STAAC RecName: Full=Probable ATP-dependent helicase dinG homolog gi|122539544|sp|Q2FYH5|DING_STAA8 RecName: Full=Probable ATP-dependent helicase dinG homolog gi|123485907|sp|Q2FGY5|DING_STAA3 RecName: Full=Probable ATP-dependent helicase dinG homolog gi|13701253|dbj|BAB42548.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp. aureus N315] gi|14247226|dbj|BAB57617.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|57284596|gb|AAW36690.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus COL] gi|87127000|gb|ABD21514.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202747|gb|ABD30557.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741010|gb|ABQ49308.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus JH9] gi|149946456|gb|ABR52392.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus JH1] gi|150374378|dbj|BAF67638.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|160368432|gb|ABX29403.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257789461|gb|EEV27801.1| DnaQ family protein [Staphylococcus aureus A9781] gi|257839862|gb|EEV64330.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9763] gi|257843543|gb|EEV67950.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9719] gi|257849952|gb|EEV73910.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9299] gi|257850282|gb|EEV74235.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8115] gi|257853568|gb|EEV76527.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6300] gi|257856986|gb|EEV79886.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A6224] gi|257861168|gb|EEV83981.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5948] gi|257862976|gb|EEV85740.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A5937] gi|262075370|gb|ACY11343.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp. aureus ED98] gi|269940948|emb|CBI49332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282590279|gb|EFB95359.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A10102] gi|282764948|gb|EFC05073.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8117] gi|285817135|gb|ADC37622.1| DinG family ATP-dependent helicase YoaA [Staphylococcus aureus 04-02981] gi|294824445|gb|EFG40868.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9754] gi|294967918|gb|EFG43947.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8819] gi|297178659|gb|EFH37905.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A8796] gi|304340488|gb|EFM06424.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315129170|gb|EFT85165.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus CGS03] gi|315197799|gb|EFU28133.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus CGS01] gi|320140373|gb|EFW32229.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus MRSA131] gi|320142700|gb|EFW34503.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314132|gb|AEB88545.1| Probable ATP-dependent helicase dinG -like protein [Staphylococcus aureus subsp. aureus T0131] gi|329723190|gb|EGG59721.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus subsp. aureus 21189] gi|329727432|gb|EGG63888.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus subsp. aureus 21172] Length = 897 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKKVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|282854298|ref|ZP_06263635.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139] gi|282583751|gb|EFB89131.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139] Length = 633 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 63 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-SIPASVQVLT 119 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD ++ PS +++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 120 GITDVMVRSAPSLNAVLPSWSEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWDDPA-V 176 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 177 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 232 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 233 GNLGVTTLEDLL 244 >gi|311741608|ref|ZP_07715431.1| epsilon subunit family exonuclease [Corynebacterium pseudogenitalium ATCC 33035] gi|311303272|gb|EFQ79352.1| epsilon subunit family exonuclease [Corynebacterium pseudogenitalium ATCC 33035] Length = 221 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG + + DRIIE+ AV + ++ L P+G+ + +HGIT++ Sbjct: 21 FAVIDTETTGFNKRYDRIIELAAVRADSHFNPIDSWHTLLNPDGKAI--KNSHIHGITND 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPLDPSRIID 125 + P+FS ++ +F + + + AHNA FD I AE+ R+ + D + ID Sbjct: 79 MVVTAPTFSEVYGDFTSYID--GMQLFAHNAPFDSKMIVAEVDRMTGGDNDGDEFFPFID 136 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 T+ +A++ +L +L R G+ H A+ D+ ++ + Sbjct: 137 TIDLAKQMLDCGPYNLPALLDRLGLDNPD--AHAAVADATSTVNMLHAL 183 >gi|282921701|ref|ZP_06329418.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9765] gi|282593963|gb|EFB98952.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9765] Length = 897 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|239928032|ref|ZP_04684985.1| DNA polymerase III [Streptomyces ghanaensis ATCC 14672] gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 631 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 86/187 (45%), Gaps = 9/187 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ET+GL ++ DR++ + + + + F L P P +++HG+T E L+ Sbjct: 23 VDVETSGLMARRDRVLSVAVITIGPDGEQTGEFSTLLNPGC---DPGPVEVHGLTVERLQ 79 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P+F + Q +AHNA+FD F+ E R + L S+ + TL++ R Sbjct: 80 GAPTFDQVAGRIGAML--QGRVLVAHNAQFDYDFLAHEFARA-RMWLPVSQRLCTLALNR 136 Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + P + + L +L YG+ S + H AL D+ +L+ + + ++++ Sbjct: 137 QVDPPTDDMKLGTLAAHYGV--SRQRAHDALDDTRVLAGILRASLREAARLDLPLPLVTC 194 Query: 191 RFFKEEK 197 E + Sbjct: 195 PPRAESQ 201 >gi|49483644|ref|YP_040868.1| hypothetical protein SAR1466 [Staphylococcus aureus subsp. aureus MRSA252] gi|257425521|ref|ZP_05601946.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428180|ref|ZP_05604578.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 65-1322] gi|257433568|ref|ZP_05609926.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus E1410] gi|257436410|ref|ZP_05612457.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M876] gi|282904038|ref|ZP_06311926.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C160] gi|282905803|ref|ZP_06313658.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908773|ref|ZP_06316591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911034|ref|ZP_06318836.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914246|ref|ZP_06322033.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M899] gi|282919169|ref|ZP_06326904.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C427] gi|282924353|ref|ZP_06332027.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C101] gi|283958220|ref|ZP_06375671.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus A017934/97] gi|293501272|ref|ZP_06667123.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 58-424] gi|293510233|ref|ZP_06668941.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M809] gi|293526828|ref|ZP_06671512.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M1015] gi|295427965|ref|ZP_06820597.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591065|ref|ZP_06949703.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus MN8] gi|81828017|sp|Q6GGV4|DING_STAAR RecName: Full=Probable ATP-dependent helicase dinG homolog gi|49241773|emb|CAG40464.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271978|gb|EEV04116.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275021|gb|EEV06508.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 65-1322] gi|257281661|gb|EEV11798.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus E1410] gi|257284692|gb|EEV14812.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M876] gi|282313740|gb|EFB44133.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C101] gi|282316979|gb|EFB47353.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C427] gi|282322314|gb|EFB52638.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M899] gi|282324729|gb|EFB55039.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327037|gb|EFB57332.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331095|gb|EFB60609.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595656|gb|EFC00620.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus C160] gi|283790369|gb|EFC29186.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920386|gb|EFD97450.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Staphylococcus aureus subsp. aureus M1015] gi|291096277|gb|EFE26538.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 58-424] gi|291467177|gb|EFF09695.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus M809] gi|295128323|gb|EFG57957.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575951|gb|EFH94667.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus MN8] gi|312438140|gb|ADQ77211.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus aureus subsp. aureus TCH60] gi|315195353|gb|EFU25740.1| hypothetical protein CGSSa00_06780 [Staphylococcus aureus subsp. aureus CGS00] Length = 897 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAEEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|283770528|ref|ZP_06343420.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus H19] gi|283460675|gb|EFC07765.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus H19] Length = 897 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|323442219|gb|EGA99850.1| ATP-dependent DNA helicase [Staphylococcus aureus O46] Length = 897 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|312829847|emb|CBX34689.1| dnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 897 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|269115238|ref|YP_003303001.1| DNA polymerase III polC-type [Mycoplasma hominis] gi|268322863|emb|CAX37598.1| DNA polymerase III polC-type [Mycoplasma hominis ATCC 23114] Length = 1437 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 6/168 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTGL + D IIE GA + + + T + Q FL R+ S ++ I +E Sbjct: 407 YVVFDLETTGLSPRLDDIIEFGATIVKNNTIT-QKIQFFL-QTKRELSAFTVESSHINNE 464 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ + + ++ ++ A +AHNA FD+ F + ++ D +DTL+ Sbjct: 465 MLKNGYAQEEGIKKIYEILKDKIA--VAHNANFDINFCKEKFSKLGLDNSKIF-GLDTLA 521 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ +P R+ L + KR+ I H D+++L+ ++IKM+ Sbjct: 522 LSYFLNPDEFRHSLGYVAKRFNIIYDTTVAHRGDYDANVLAKIWIKMI 569 >gi|156979774|ref|YP_001442033.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu3] gi|156721909|dbj|BAF78326.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus Mu3] Length = 897 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQ-YRPKKVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|238026493|ref|YP_002910724.1| exonuclease, DNA polymerase III subunit epsilon family/GIY-YIG catalytic domain-containing protein [Burkholderia glumae BGR1] gi|237875687|gb|ACR28020.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia glumae BGR1] Length = 381 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG VE+ T+ + P + +L GITD Sbjct: 20 AFVDLETTGGSATEHRITEIGVVEVGPNG--VSTWSSLIDP-CQPIPAFIQQLTGITDAM 76 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ PSF+SI + + + +IAHNA FD GF+ AE +R ++ T+ + Sbjct: 77 VRGAPSFASIAAALYARL--EGRFFIAHNASFDRGFLRAEFERAGYAFNPD--VLCTVRL 132 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + + ++H AL D+ L+ + ++ Sbjct: 133 SRALFPRESRHGLDALIERHALVPN--ARHRALADADLVWQFWRRL 176 >gi|257430810|ref|ZP_05607192.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 68-397] gi|257278938|gb|EEV09557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus subsp. aureus 68-397] Length = 905 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAEEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKKVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|237732820|ref|ZP_04563301.1| DNA polymerase III subunit epsilon [Mollicutes bacterium D7] gi|229384061|gb|EEO34152.1| DNA polymerase III subunit epsilon [Coprobacillus sp. D7] Length = 224 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP----NGRKNSPEALKLHG 64 +VFD+ETTG + K DRIIEIGA+++ + +R F P S + ++ G Sbjct: 41 YVVFDLETTGFNKKEDRIIEIGAIKVKNGRVVDR-FSTLCAPIKGGKPMYISAKITEVTG 99 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRI 123 I + L ++ S F + ++ +AHN KFD+ F+ +R N + + I Sbjct: 100 IKNVDLLNQIPESEAVKNFMCWLG-ESKISVAHNGLKFDIPFLKEACKRSNVE-FKFTHI 157 Query: 124 IDTLSIARRK-----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +DT+ +++ N +L + +G+ H A+ D L ++ K+ Sbjct: 158 LDTMLLSKALNYVNNGNIPNNKQETLARYFGVDY---QAHRAVNDCEALLKIFDKLKNDA 214 Query: 179 SQINFGFK 186 INF K Sbjct: 215 KNINFSLK 222 >gi|167903799|ref|ZP_02491004.1| possible DNA polymerase/helicase [Burkholderia pseudomallei NCTC 13177] Length = 349 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894] Length = 350 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|314981011|gb|EFT25105.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA3] gi|315093023|gb|EFT64999.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL060PA1] Length = 597 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 27 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-SIPASVQVLT 83 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD ++ PS +++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 84 GITDVMVRSAPSLNAVLPSWSEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWDDPA-V 140 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 141 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 196 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 197 GNLGVTTLEDLL 208 >gi|262283016|ref|ZP_06060783.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp. 2_1_36FAA] gi|262261268|gb|EEY79967.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp. 2_1_36FAA] Length = 818 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 18/242 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D+E TG S +II++G V L D + +T+Q + P+ +L G++ Sbjct: 1 MKYAIVDLEATGTGS-TAKIIQVGIVILEDG-EIKQTYQTDINPHEA-LEEHIKQLTGLS 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 D+ L P FS + E ++ ++A ++AHN KFD + L D L P +DT Sbjct: 58 DQRLSQAPDFSQVAREIYELI--EDAVFVAHNVKFDANLLAESLFWEGFDLLSP--RVDT 113 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + +A+ P+ + L+SLC+ I + H A+ D+ + +++K+ + Sbjct: 114 VELAQVVFPTYEKYGLSSLCELLEIPLE--QAHTAISDAMATALLFLKIQEKIQSLPKPL 171 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI---QTLGKNAIWDRYIS 242 + +K R + LD H + +GK +RY+S Sbjct: 172 LERLLILSNSLIYESRLVLEDCFEKMPEGRAC-DWLDCHGIYLKKQAKVGK----ERYLS 226 Query: 243 SN 244 ++ Sbjct: 227 TD 228 >gi|221195203|ref|ZP_03568259.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626] gi|221185106|gb|EEE17497.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626] Length = 1031 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 96/228 (42%), Gaps = 21/228 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL K +IEI A + + + F+ F+ P + PE + L ITDE Sbjct: 64 IVVLDTETTGLSFKTCGLIEISAAK-ISGREIVERFETFVDP-RKPIPPEIVALTHITDE 121 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S DF +AHNA FD FI +R+ + IDTLS Sbjct: 122 DVAGAPRAKEAVSALADFVG--GLPVLAHNAVFDRTFI----ERVPGGHEVSNTWIDTLS 175 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R P S + L+ + + +G + R H A D L ++ +++G + G Sbjct: 176 LSRIALPRLSSHKLSRMAEAFG---ALRVTHRASDDVDALVGMWRIILLGLLDLPRGLLD 232 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 ++ + T+ +P+F I + + T LG + Sbjct: 233 MFAEMHEDVEWTI---------RPIFAHIAAMKQEAAKGTGAPLGPQS 271 >gi|315924662|ref|ZP_07920879.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263] gi|315621561|gb|EFV01525.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263] Length = 178 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 9/174 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFD+ET + +N R+ IG + D T+ F + P +L GI + Sbjct: 3 RFVVFDVETP--NRENRRMSAIGITVIEDGKITDE-FYSLVNPETY-FDYFNTRLTGICE 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + P+F ++ + +AHNA FD+G + L+ + R + T+ Sbjct: 59 DAVWNAPTFPELWKTIAPMLSSG--LLVAHNAVFDMGVLKRCLRDYRIEWKPHVRYLCTV 116 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + RR P + LN LC YGI ++H H A DS + + ++ + G+ + Sbjct: 117 QMGRRIIPGMSHKLNVLCDYYGINLAH---HQAASDSRACAQILLRYLEVGADV 167 >gi|283470668|emb|CAQ49879.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus aureus subsp. aureus ST398] Length = 897 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNHIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAEEIYDKI--KDCIFVAHNVDFDLNFIKKAFKNCNIQY-RPKKVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|169627433|ref|YP_001701082.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus ATCC 19977] gi|169239400|emb|CAM60428.1| DNA polymerase III, epsilon subunit (DnaQ) [Mycobacterium abscessus] Length = 327 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 9/183 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + +V D+ET+G R+I + A+ + + L P P +HG+T Sbjct: 13 KWVVVDLETSGFQPGRARVISVAALAMDADGTITDSVVSLLNPG---VDPGPTHVHGLTP 69 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L+ +P FS I + + +AHN FD F+ AE + + + L ++ T+ Sbjct: 70 EMLEGQPEFSDIAPDLIALL--RGRTLVAHNVGFDYSFLAAEAELVGAE-LPTEAVMCTV 126 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + RR + N L +L +G+ H A D+ +L++V K++ + Sbjct: 127 ELTRRLELDTPNLRLETLAAHWGVE--QLKAHDAYDDARVLAEVLPKVLERARERGTWLP 184 Query: 187 TNE 189 E Sbjct: 185 IRE 187 >gi|258422513|ref|ZP_05685421.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9635] gi|257847270|gb|EEV71276.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus A9635] Length = 897 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I ++ Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEK 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E +D ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYDKI--KDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKKVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|295398569|ref|ZP_06808601.1| possible DNA-directed DNA polymerase III epsilon subunit [Aerococcus viridans ATCC 11563] gi|294973170|gb|EFG48965.1| possible DNA-directed DNA polymerase III epsilon subunit [Aerococcus viridans ATCC 11563] Length = 957 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 9/166 (5%) Query: 9 KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG N DRII+IG V + + F + PN ++ E KL GIT+ Sbjct: 8 YAVLDLETTGSTYDNGDRIIQIG-VAFVQNGQVVDQFATDIFPN-QEIPREITKLTGITN 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +K P F ++ W N +AHN FD F++ Q P +DT+ Sbjct: 66 EQVKRAPKFEAVAEILWQ--KLSNTVIVAHNIGFDYKFLDKSFQAHGY-PAMTHDRVDTV 122 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + R P++ L C +GI + + H A+ D+ + + I Sbjct: 123 EMVRTLFPTADSYKLGEFCLAHGIQLEN--AHTAIDDAVATAHILI 166 >gi|323342398|ref|ZP_08082630.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463510|gb|EFY08704.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 200 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 12/176 (6%) Query: 4 KNKMRKI----VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 +N ++ + V D+ETTG +K + I E+ A++ +Y + + F + P+ P Sbjct: 6 ENLLKFVPNFTVIDLETTGRSNKFEDITELSAIKYRNYKQVD-AFSTLVKPDN-SILPFV 63 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 ++L GIT+E + D P + +F DF + HN FD G + + Sbjct: 64 VELTGITEEMVSDAPKIDQVIKQFVDFIGTD--VILGHNVMFDYG-LVYDAYLATVGLRM 120 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +DTL ++R + S+ + L +LC + + H D ++VYIKM Sbjct: 121 HNDYVDTLRVSRLLNKDSKNHKLETLCAYF--DVERLVGHRGSEDCLQTAEVYIKM 174 >gi|332882730|ref|ZP_08450341.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679232|gb|EGJ52218.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 442 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + T++ F + P R KL GI ++ Sbjct: 2 YAILDIETTGGKYDEEGITEIAIYRFDGHELTDQ-FISLINPE-RPIQDFVTKLTGINNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P F + + Q+ + HNA FD + E +R+ D + + + T+ Sbjct: 60 MLRNAPKFYEVAKRIVEI--TQDTIIVGHNAAFDYRILQTEFRRLGYDYIRTT--LCTVE 115 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++++ P L L + GI +S R H A D+ +++ ++ Sbjct: 116 LSQQLLPEKESYSLGKLVRSLGIPMSER--HRASGDALATLNLFKYLLE 162 >gi|256818923|ref|YP_003140202.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM 7271] gi|256580506|gb|ACU91641.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM 7271] Length = 442 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I +I A+ + + F + P R KL GI ++ Sbjct: 2 YAILDIETTGGKYNEEGITDI-AIYQFNGHEITDQFISLINPE-RPIQEFVTKLTGINNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P F + + + + HNA FD + E +R+ D + + + T+ Sbjct: 60 MLRNAPKFYEVAKRIVEI--TTDCIIVGHNAAFDYRILQTEFRRLGYDFVRTT--LCTVE 115 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++ R P+ L L + GI +S R H A D+ ++ ++ Sbjct: 116 LSERLIPNKESYSLGKLVRSLGIPVSDR--HRASGDALATLKLFKYLLE 162 >gi|314966430|gb|EFT10529.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA2] gi|315091670|gb|EFT63646.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA4] gi|327327874|gb|EGE69650.1| putative DNA polymerase III, epsilon subunit [Propionibacterium acnes HL103PA1] Length = 590 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 13/192 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +++ V D+ETTG + +I EIGAV+ + + FQ +CP G L Sbjct: 20 LSEVTFCVVDLETTGTS-EGSQITEIGAVK-VCGGRVEGEFQTLVCPTG-SIPASVQVLT 76 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GITD ++ PS +++ + +F ++ +AHNA+FD+GF+ + + DP+ + Sbjct: 77 GITDVMVRSAPSLNAVLPSWSEF--SRSTALVAHNARFDIGFLQRAYAQHDYPWDDPA-V 133 Query: 124 IDTLSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DTL++AR L++L + + T + H AL D+ DV ++ Sbjct: 134 VDTLALARSVLARGEVRNYKLSTLSRLFHTTTT--PSHRALADARATVDVLHGLI--DRV 189 Query: 181 INFGFKTNEDRF 192 N G T ED Sbjct: 190 GNLGVTTLEDLL 201 >gi|195542024|gb|ACF98221.1| putative DNA polymerase III epsilon subunit [uncultured bacterium 1114] Length = 312 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 10/211 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60 +++ D ETTGLD DRI+ IGAV L +RTF+ + P G A Sbjct: 21 TLLSELPVTALDTETTGLDPGRDRIVAIGAVRLHGRRLYPSRTFETLVRP-GISIPASAS 79 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGI D + P + I+ + + + H+ FD+ I A +R +P Sbjct: 80 AIHGIGDAMVAGAPGMAEIWPRLSPWLAGR--VVLGHHVDFDLAMIGAAARRHGFSWTEP 137 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +DT + SS DL+ +R+G+T+ R H AL DS + + VY++++ Sbjct: 138 FA-LDTARLVAALDGSSPVDLDEAAQRHGVTLEGR--HSALGDSLIAARVYLRLVP--RL 192 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + G T D + + P + + P Sbjct: 193 VERGVVTLGDAIRFQGRDAAP-LQSFRAPAP 222 >gi|157962392|ref|YP_001502426.1| ribonuclease T [Shewanella pealeana ATCC 700345] gi|157847392|gb|ABV87891.1| ribonuclease T [Shewanella pealeana ATCC 700345] Length = 232 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGA-VELLDYSKT---NRTFQVFLCP-NGR 53 + KN+ R +V D+ET G ++K D ++EI + +D ++T + P G Sbjct: 9 LMKNRFRGYFPVVIDVETAGFNAKTDALLEIAVSMLKMDDEGVLALDKTLHFNIEPFEGA 68 Query: 54 KNSPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGF 105 PEAL GI + +K +F IF E +AHNA FD GF Sbjct: 69 NLEPEALAFTGIDPTSPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGF 128 Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + ++R + + P P DT ++A L C GI +R H AL D Sbjct: 129 VTQAIERNALKRTPFHPFATFDTAALAGLAI--GHTVLAKACAMAGIPFDNREAHSALYD 186 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ ++ + Sbjct: 187 TERTAELFCLIVNRWKALG 205 >gi|167920040|ref|ZP_02507131.1| possible DNA polymerase/helicase [Burkholderia pseudomallei BCC215] Length = 346 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|328544128|ref|YP_004304237.1| DNA polymerase III, epsilon subunit [polymorphum gilvum SL003B-26A1] gi|326413871|gb|ADZ70934.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum SL003B-26A1] Length = 719 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 13/213 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT--FQVFLCPNGRKNSPEALKLHGITD 67 +V D ETTGLD ++DRI++IGAV + ++ + T F+V + P G A ++HG+ D Sbjct: 21 VVLDTETTGLDVRHDRIVQIGAVRMH-GAEIDETAVFEVTVDP-GIPIPEVASRIHGLAD 78 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + KP +++ + F +A + H+ FD+ + E +R +P + L Sbjct: 79 ADVAGKPGLAAVMPDLVAFIG--DAVVVGHSIHFDMAVLRHEAERHGFVWKEPRALDVAL 136 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI----KMMVGGSQINF 183 A L+SL G+TI+ R H AL D+ + VY K++VGG + Sbjct: 137 MAAGLDRELVDTSLDSLALGLGVTITGR--HTALGDALATARVYAALQPKLLVGGVR-TL 193 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 G R + R Sbjct: 194 GETETLCRRATGLIARQEDAGWFARPSERPDFA 226 >gi|313672733|ref|YP_004050844.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM 19672] gi|312939489|gb|ADR18681.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM 19672] Length = 195 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 52/181 (28%), Positives = 90/181 (49%), Gaps = 12/181 (6%) Query: 1 MIRKN--KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKN 55 M+ K+ + IV D+ETTG+ K +I+EI A+++ K N +F + P Sbjct: 1 MLNKSIYETDFIVIDLETTGISPYKGAKIVEIAALKIEKGLKINPKNSFYSLVNP-LIPI 59 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 A ++H I++E +KD P+ + +F +F + I N FD FI N Sbjct: 60 PYSAYRVHKISNEIVKDYPTIEKVLPKFLEFLDT--PFIIGQNISFDYSFIKYFSDLYNF 117 Query: 116 DPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGIT--ISHRSKHGALLDSHLLSDVYI 172 L IIDT++IA++ P+ R +L++L +GI + + +H A D + + ++I Sbjct: 118 R-LKEFIIIDTINIAKKIAPNLKRYNLDNLITYFGIENILGNGKRHRADFDIYATALIFI 176 Query: 173 K 173 K Sbjct: 177 K 177 >gi|261868521|ref|YP_003256443.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413853|gb|ACX83224.1| ribonuclease T [Aggregatibacter actinomycetemcomitans D11S-1] Length = 217 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53 I K++ R +V D+ET GL++K D ++E+ A+ L ++ + G Sbjct: 12 ILKHRFRGYLPVVIDVETAGLNAKTDALLELAAITLKMDENGNLLPDQKCHFHIQAFEGA 71 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 PE+LK +GI D L+ S + SE + + Q + +AHNA FD GF Sbjct: 72 NIDPESLKFNGIDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNAAFDQGF 131 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A QR+N ++P P DT +++ + L C+ I + H AL D Sbjct: 132 LMAAAQRMNAKRNPFHPFSTFDTATLSGFMF--GQTVLVKACQAAKIPFDSQQAHSALYD 189 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ M+ Q+ Sbjct: 190 TERTAELFCYMVNHLKQLG 208 >gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] Length = 658 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 11/204 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ET+GL ++ DR++ + V + F L P P + +HG+T E L Sbjct: 23 VDVETSGLVARRDRVLSVAVVTVGPDGAQTGEFSTLLDPGC---DPGPVHVHGLTAERLH 79 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P+F + + +AHNA+FD F+ E R L +R + TL++ R Sbjct: 80 GAPAFEEVAQRISQML--EGRVLVAHNAQFDYDFLAHEFARAGVS-LPVARRLCTLALNR 136 Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R P +++ L +L YG+ H AL D+ +L+ V + ++++ Sbjct: 137 RVDPPTQDLRLGTLAAHYGVP--QLRAHDALDDTRVLAGVLRASLREAARLDLRLPFVAC 194 Query: 191 RFFKEEK--KTVPNISLLKRDKPL 212 ++ + + P R+ Sbjct: 195 PPRQDARFTPSPPKTPCAYRNPGR 218 >gi|223043083|ref|ZP_03613130.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus capitis SK14] gi|222443294|gb|EEE49392.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus capitis SK14] Length = 900 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 8/166 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTG D II+IG + ++ + T+ + + P L I ++ Sbjct: 6 YAIVDLETTGNQLDYDEIIQIGITFVRNHKIID-TYHSMIR-TDLEIPPFIQALTSIEED 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + + +D ++ ++AHN FD+ FI + P +++DTL Sbjct: 64 MLAQAPYFNEVAEDIYDQI--KDCIFVAHNISFDLNFIKNAFNNCDIQ-FKPKKVMDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + P L+ L + + I + H A D+ + + IK Sbjct: 121 LFKIAFPTDKSYQLSELAQAHDIPLD--KAHRADEDATTTAKLMIK 164 >gi|171780060|ref|ZP_02920964.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281408|gb|EDT46843.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 827 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 87/175 (49%), Gaps = 10/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + V D+E TG + II++G V +++ + +T+Q + P+ + + Sbjct: 1 MMQVNSQKYAVVDLEATGAHAM-AEIIQVGIV-IIENDQIVKTYQTDVNPHEA-LTEHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + E + + + ++AHN KFD + +L + P Sbjct: 58 HLTGITDEQLAKAPDFSKVAQEIYHLIS--DCVFVAHNVKFDANLLAEKLFLEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++DT+ +++ +P+ + L L + ++ H A+ D++ + + +K+ Sbjct: 116 --LVDTVELSQVFYPTLEKYTLGHLADVLQLDLTD--AHTAISDAYATAQLLLKL 166 >gi|332969609|gb|EGK08627.1| DNA polymerase III, epsilon subunit [Kingella kingae ATCC 23330] Length = 463 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 10/170 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M ++ D+ETTG DRI E+ + + + P ++ SP KL GI Sbjct: 26 MPVVILDLETTGGHFVQDRITEVAFLRFWQGD--VQRVSYLVNPQ-KEISPFVQKLTGID 82 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++ P+ + I + + A +IAHN++FD F E QR + + + Sbjct: 83 NQMVRRAPALAKILPDLLPLL--RGALFIAHNSRFDYTFWRNECQRAGVAFA--ALTLCS 138 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++R+ +P ++ L+S+ +R G+ + R H A+ D L+ + + Sbjct: 139 VQLSRKLYPQYHKHSLDSIIERNGLIVPSR--HRAMADVDALAQFLQQAL 186 >gi|261343971|ref|ZP_05971616.1| ribonuclease T [Providencia rustigianii DSM 4541] gi|282568361|gb|EFB73896.1| ribonuclease T [Providencia rustigianii DSM 4541] Length = 214 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 20/196 (10%) Query: 5 NKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNS 56 N+ R +V D+ET G + K D ++EI A+ L ++ + T + P G Sbjct: 12 NRFRGYYPVVIDVETGGFNPKTDGLLEIAAITLKMDNEGWLSIDETLHFHVEPFEGANLE 71 Query: 57 PEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINA 108 P AL GI L+ S + + A +AHNA FD F+ Sbjct: 72 PAALAFTGIDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMN 131 Query: 109 ELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 +R + ++P P DT +++ + L C GI + HGAL D++ Sbjct: 132 AAERSGLKRNPFHPFATFDTAALSGLVF--GQTILAKACVTAGIPFDGKQAHGALYDTNR 189 Query: 167 LSDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 190 TALLFCELVNKWKKLG 205 >gi|313206803|ref|YP_004045980.1| DNA polymerase iii, epsilon subunit [Riemerella anatipestifer DSM 15868] gi|312446119|gb|ADQ82474.1| DNA polymerase III, epsilon subunit [Riemerella anatipestifer DSM 15868] gi|315023876|gb|EFT36878.1| DNA polymerase III epsilon subunit [Riemerella anatipestifer RA-YM] gi|325335757|gb|ADZ12031.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases [Riemerella anatipestifer RA-GD] Length = 407 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIE+ G + + IIE+ D K F + P S KL GIT + Sbjct: 2 YSVIDIESNGGAFREECIIEVAIYRY-DGHKIVDQFISMVNPE-ADISHFVQKLTGITPK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K P F I + + + + HN FD + +R+ +DT+ Sbjct: 60 MVKTAPKFHEIAKRIIEI--TEGSTLVGHNVDFDYRMLRQSFKRLGYHF--SIETLDTIP 115 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +A++ P L L K GI ++ H A D+ D++ +M Sbjct: 116 LAKKLIPNEESYSLGKLVKSLGIPLA--EHHRASSDARATLDLFKLLMT 162 >gi|270284149|ref|ZP_05965623.2| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093] gi|270277190|gb|EFA23044.1| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093] Length = 214 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 29/186 (15%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I DIETTGL + + I EIGAV + D +R F + + P G+ L GI+D Sbjct: 18 YISLDIETTGLAPRQETITEIGAVRVRDGRIADR-FSMLINP-GKHIPSRITALTGISDA 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR------ 122 ++D P F D+ + I HN +FD+ F+ E ++ P Sbjct: 76 MVEDAPMIDEAIPAFVDWVD--GDRLIGHNIRFDLSFLLKEAMLLDAALATPFNAKAVNP 133 Query: 123 -----------------IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 +DT+ I R PS R+ L+ L RYG+ + H AL D+ Sbjct: 134 AAMTTTAEITRAMLGPDPLDTMMIDRWLFPSERHRLSDLIVRYGV--ADTEAHRALSDAT 191 Query: 166 LLSDVY 171 + Sbjct: 192 QTYQCF 197 >gi|242239125|ref|YP_002987306.1| ribonuclease T [Dickeya dadantii Ech703] gi|242131182|gb|ACS85484.1| ribonuclease T [Dickeya dadantii Ech703] Length = 225 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 22/212 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +++ D ++EI AV L + + + T + P G +P Sbjct: 15 RFRGFYPVVIDVETAGFNAQTDALLEIAAVTLKMDDNGWLQPDETLHFHIEPFEGAILNP 74 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 +AL +GI + + + IF ++ +AHNA FD F+ A Sbjct: 75 DALAFNGIDPTNPLRGAVSEYEALHEIFKMVRKGIKDKGCNRGIVVAHNAAFDHSFLMAA 134 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT S++ + L C I H AL D+ Sbjct: 135 AERCGLKRNPFHPFVTFDTTSLSGLVL--GQTVLAKACITADILFDSSQAHSALYDTQRT 192 Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFK 194 ++++ +++ +GG + N+ Sbjct: 193 AELFCELVNRWKRLGGWPLAVEDSDNDSAVNA 224 >gi|167846824|ref|ZP_02472332.1| possible DNA polymerase/helicase [Burkholderia pseudomallei B7210] Length = 348 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|237752604|ref|ZP_04583084.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC BAA-430] gi|229376093|gb|EEO26184.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC BAA-430] Length = 267 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 8/163 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIET G + IEIG +++ + K F+ F+ + K+ GI + Sbjct: 71 FCIVDIETNGHNPCVHTPIEIGTLKVRNG-KVVDCFESFV--FNAEIPEYITKITGINAQ 127 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P +S+ +F F ++ ++AHN FD F++ L++ L R + T+ Sbjct: 128 MLENAPKLASVLEKFKLFLG--DSIFVAHNVDFDYNFLSQSLEKCGFGYLYNPR-LCTIK 184 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +A+R + R L L + GI H++ H AL DS +++ Sbjct: 185 LAQRVLQAPRYSLGFLNEFLGIN--HQNLHRALQDSKTALEIF 225 >gi|212712065|ref|ZP_03320193.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM 30120] gi|212685587|gb|EEB45115.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM 30120] Length = 214 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 20/196 (10%) Query: 5 NKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNS 56 N+ R +V D+ET G + K D ++EI A+ L + + T + P G Sbjct: 12 NRFRGYYPVVIDVETGGFNPKTDGLLEIAAITLKMDKDGWLAIDETLHFHVEPFEGANLE 71 Query: 57 PEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINA 108 P AL+ GI L+ S + + A +AHNA FD F+ Sbjct: 72 PSALEFTGIDPTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMN 131 Query: 109 ELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 +R + ++P P DT +++ + L C GI + HGAL D++ Sbjct: 132 AAERSGLKRNPFHPFATFDTAALSGLVF--GQTILAKACVTAGIPFDGKQAHGALYDTNR 189 Query: 167 LSDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 190 TALLFCELVNKWKKLG 205 >gi|167825322|ref|ZP_02456793.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 9] Length = 352 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|319936397|ref|ZP_08010813.1| DNA polymerase III [Coprobacillus sp. 29_1] gi|319808512|gb|EFW05064.1| DNA polymerase III [Coprobacillus sp. 29_1] Length = 187 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 13/167 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTGL +D+IIE+G +++ + ++ + + P R+ SP KL GIT++ Sbjct: 22 YCVIDLETTGLSWADDKIIEVGILKIRNQQIIDK-YSQLINPE-REVSPFITKLTGITND 79 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+ I + + F + + HN FD+ F+ + + +DTL Sbjct: 80 MLLGMPTLDEIRDDVFSFIGDD--ILLGHNTSFDLNFVANQFH-----IDIENEYMDTLQ 132 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R+ +P ++ L + + ++ + H ++ D ++Y K+ Sbjct: 133 FCRKVYPHMKHHRLTDMVQYLNLSNNE---HRSIADCIATYELYEKI 176 >gi|254448582|ref|ZP_05062041.1| ribonuclease T [gamma proteobacterium HTCC5015] gi|198261771|gb|EDY86057.1| ribonuclease T [gamma proteobacterium HTCC5015] Length = 212 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 17/188 (9%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V DIET G +++ D ++EI AV + + T + P G P Sbjct: 10 RFRGFLPVVIDIETGGFNAQTDAVLEIAAVMIDMDHQGRLRVGETISTHVEPFQGANIEP 69 Query: 58 EALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109 ++L++ GI + L+ S + A + HN+ FD+ F+NA Sbjct: 70 KSLEITGIDLNNPLRGAVSEREALDKLLKPIRSAVKNHGCTRAILVGHNSFFDLNFLNAA 129 Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + R ++P DT++IA + + L C+ G+ ++ H A+ D+ Sbjct: 130 IDRCTYKRNPFHAFSSFDTVTIAGLAY--GQTVLARACEAAGLGWNNSEAHSAVYDAEQT 187 Query: 168 SDVYIKMM 175 + ++ K++ Sbjct: 188 ARLFCKVI 195 >gi|240168250|ref|ZP_04746909.1| hypothetical protein MkanA1_02987 [Mycobacterium kansasii ATCC 12478] Length = 680 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 23/221 (10%) Query: 2 IRKNKMRKIVFDIETTGLDSKN------DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN 55 + + +V D+ETTG + D I EIGAV++ F + P R Sbjct: 50 LPLRETTFVVVDLETTGGRTTGTEAAPPDAITEIGAVKVR-GGTVLAEFATLVDPQ-RSI 107 Query: 56 SPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINK 115 P+ ++L GIT ++D P S++ F++F N+ ++AHNA FD+GF+ A ++ + Sbjct: 108 PPQIVQLTGITTAMVRDAPVISAVLPMFFEFAG--NSVFVAHNAGFDIGFLRAAARQCDI 165 Query: 116 DPLDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P +++ T+ +ARR + + L L + + +++ + H AL D+ DV Sbjct: 166 TWPRP-KVLCTVRLARRVLSREEAPSVRLAELARLF--SVATQPTHRALDDARATVDVLH 222 Query: 173 KMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLF 213 ++ N G T F + + +PN++ +R K + Sbjct: 223 ALIERVG--NQGVHT-----FADLRSYLPNVTPAQRRKRVL 256 >gi|254295577|ref|ZP_04963035.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 406e] gi|157805524|gb|EDO82694.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 406e] Length = 381 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|167912066|ref|ZP_02499157.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 112] Length = 343 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|300767360|ref|ZP_07077272.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495179|gb|EFK30335.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 936 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 9/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M K V DIETTG K DRII+IG + + N TF + P Sbjct: 1 MTMKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKIIN-TFATDVNP-LTTVPAVI 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L GI++ ++ P F + + Q ++AHN FD+ FIN+ELQR+ L Sbjct: 59 ENLTGISNARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPEL- 115 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P + +DT+S+++ P+ S L L I H H A D+ + ++I + Sbjct: 116 PIQAVDTVSLSQILLPTASSFRLRDLSHLLAID--HNHPHSADSDAIATAHLFITL 169 >gi|269219422|ref|ZP_06163276.1| exonuclease, DNA polymerase III, epsilon subunit family [Actinomyces sp. oral taxon 848 str. F0332] gi|269211118|gb|EEZ77458.1| exonuclease, DNA polymerase III, epsilon subunit family [Actinomyces sp. oral taxon 848 str. F0332] Length = 206 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 11/203 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M V D+ETTGL DRI+EIG V L + + +Q + P A+ +HG+T Sbjct: 1 MGYAVVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSLVNPLRGM---GAVFVHGLT 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIID 125 D + D P+ + + + F+ + +AHNA FDVGF+NA R + + Sbjct: 58 DADVADAPTLADLLPQIRGLFSGR--ALVAHNATFDVGFLNASFARAGYGMHVPREATVC 115 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 T+ +++ P R+ L + +R G+ + R H AL D+H + + + + G Sbjct: 116 TMELSKIYLPPGRHGLAAAAERAGVATAKR--HRALADAHTAAGLLRHYLNAEAD---GV 170 Query: 186 KTNEDRFFKEEKKTVPNISLLKR 208 + E F + + P + R Sbjct: 171 RYAERAFSRSGEAVEPAAWIEAR 193 >gi|332140721|ref|YP_004426459.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype'] gi|327550743|gb|AEA97461.1| ribonuclease T [Alteromonas macleodii str. 'Deep ecotype'] Length = 210 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAV--ELLDYSK--TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++ D ++E+ AV ++ D + TF + P G P AL+ + Sbjct: 17 PVVIDVETAGFNAGTDALLELAAVTVKMDDDGILHPDETFHYHIDPFEGANLEPAALEFN 76 Query: 64 GITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI L+ S + Q + +AHNA FD F+NA ++R N Sbjct: 77 GIDPNCALRGAIEESEAMKDLCKGIRKAQKNAGCQRSVIVAHNATFDQSFVNAAIERCNI 136 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT S+A + L C+ GI H AL D+ ++++ Sbjct: 137 KRTPFHPFVSFDTTSLAGLAL--GQTVLVKACRAAGIAFDQSEAHSALYDAQKTTELFCF 194 Query: 174 MMVGGSQIN 182 M+ + Sbjct: 195 MVNRYKALG 203 >gi|255542840|ref|XP_002512483.1| exonuclease, putative [Ricinus communis] gi|223548444|gb|EEF49935.1| exonuclease, putative [Ricinus communis] Length = 334 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 88/212 (41%), Gaps = 25/212 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+ETTG + +RIIEI +L N TFQ + P + P + +HGIT Sbjct: 135 IVFDLETTGFSREYERIIEIALQDLHGGE--NSTFQTLINPG--RIVPNS-HIHGITTHM 189 Query: 70 L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121 + P + + + +AHN + FDV F+ E +R D Sbjct: 190 VCKPHVPRMEDLIPILLQYIRSRQKPGGYVLLVAHNGRSFDVPFLINEFKRSGVDVPCNW 249 Query: 122 RIIDTLSIARRKHPSS----RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +DTL +AR+ S + L L + +GI + S H A+ D LL+ ++ + Sbjct: 250 LFMDTLPLARKWMKSKGLKISSSLQGLREAFGIKLEG-SAHRAMSDVRLLAKLFQMLT-- 306 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 F KT E I++ K+ Sbjct: 307 -----FNLKTTLPSLVAESFTASELINVKKKK 333 >gi|239944923|ref|ZP_04696860.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998] gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379] gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 641 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 11/205 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ET+GL ++ DR++ + + + + F L P P +++HG+T E L+ Sbjct: 23 VDVETSGLVARRDRVLSVAVITIGPDGEQTGEFSTLLDPGC---DPGPVEVHGLTAERLR 79 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P+F + Q+ +AHNA+FD F+ E R + L S+ + TL++ R Sbjct: 80 GAPTFDQVAGRIGAML--QDRVLVAHNAQFDYDFLAHEFARA-RMWLPVSQRLCTLALNR 136 Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + P + + L +L Y + + H AL D+ +L+ + + ++++ Sbjct: 137 QVDPPTDDMKLGTLATHY--DVPQQRAHDALDDTRVLAGILRASLREAARLDLPLPLVTC 194 Query: 191 RFFKEEK--KTVPNISLLKRDKPLF 213 E + P R+ Sbjct: 195 PPRAESQFTPKPPKTPCAYRNPGRL 219 >gi|167720732|ref|ZP_02403968.1| possible DNA polymerase/helicase [Burkholderia pseudomallei DM98] Length = 334 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|76808562|ref|YP_334417.1| DNA polymerase/helicase [Burkholderia pseudomallei 1710b] gi|126455164|ref|YP_001067249.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia pseudomallei 1106a] gi|134278018|ref|ZP_01764733.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 305] gi|217420886|ref|ZP_03452391.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 576] gi|242315973|ref|ZP_04814989.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1106b] gi|254195634|ref|ZP_04902061.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei S13] gi|254261397|ref|ZP_04952451.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1710a] gi|76578015|gb|ABA47490.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 1710b] gi|126228806|gb|ABN92346.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1106a] gi|134251668|gb|EBA51747.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 305] gi|169652380|gb|EDS85073.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei S13] gi|217396298|gb|EEC36315.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 576] gi|242139212|gb|EES25614.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1106b] gi|254220086|gb|EET09470.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1710a] Length = 381 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|314933639|ref|ZP_07841004.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus caprae C87] gi|313653789|gb|EFS17546.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus caprae C87] Length = 900 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 8/166 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + ++ + T+ + + P L I ++ Sbjct: 6 YAVVDLETTGNQLDYDEIIQIGITFVSNHKIID-TYHSMIR-TDLEIPPFIQALTSIEED 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F+ + + +D ++ ++AHN FD+ FI + P +++DTL Sbjct: 64 MLAQAPYFNEVAEDIYDQI--KDCIFVAHNISFDLNFIKNAFNNCDIQ-FKPKKVMDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + P L+ L + + I + H A D+ + + IK Sbjct: 121 LFKIAFPTDKSYQLSELAQAHDIPLD--KAHRADEDATTTAKLMIK 164 >gi|22125847|ref|NP_669270.1| ribonuclease T [Yersinia pestis KIM 10] gi|45441960|ref|NP_993499.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001] gi|149365707|ref|ZP_01887742.1| ribonuclease T [Yersinia pestis CA88-4125] gi|218929473|ref|YP_002347348.1| ribonuclease T [Yersinia pestis CO92] gi|229837906|ref|ZP_04458065.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895067|ref|ZP_04510244.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A] gi|229898469|ref|ZP_04513615.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. India 195] gi|229902309|ref|ZP_04517429.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516] gi|24638167|sp|Q8ZE08|RNT_YERPE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|21958778|gb|AAM85521.1|AE013798_8 RNase T, degrades tRNA [Yersinia pestis KIM 10] gi|45436823|gb|AAS62376.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001] gi|115348084|emb|CAL21010.1| ribonuclease T [Yersinia pestis CO92] gi|149292120|gb|EDM42194.1| ribonuclease T [Yersinia pestis CA88-4125] gi|229680644|gb|EEO76740.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516] gi|229688513|gb|EEO80583.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. India 195] gi|229694272|gb|EEO84319.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701955|gb|EEO89977.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A] gi|320015036|gb|ADV98607.1| ribonuclease T [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 215 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++++D ++EI AV + + T + P G PEAL + Sbjct: 19 PVVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFN 78 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI + + + +IF ++ +AHNA FD F+ A +R + Sbjct: 79 GIDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI H AL D+ + ++ + Sbjct: 139 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCE 196 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 197 LVNRWKKLG 205 >gi|315634736|ref|ZP_07890020.1| ribonuclease T [Aggregatibacter segnis ATCC 33393] gi|315476684|gb|EFU67432.1| ribonuclease T [Aggregatibacter segnis ATCC 33393] Length = 217 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 20/192 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53 + K++ R +V D+ET GL++K D ++E+ A+ L ++ + P G Sbjct: 12 LLKHRFRGYLPVVIDVETAGLNAKTDALLELAAITLKMDDAGNLVPDQKCHFHIHPFEGA 71 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 PE++K +GI D L+ S + SE + + Q + +AHNA FD GF Sbjct: 72 NIDPESIKFNGIDIDNPLRGAVSENIAISEMFKMVRKAQKDADCQRSIIVAHNASFDHGF 131 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A QR+N ++P P DT +++ + L C+ I + H AL D Sbjct: 132 VMAAAQRMNAKRNPFHPFSTFDTATLSGFMF--GQTVLVKACQAAKIPFDSQQAHSALYD 189 Query: 164 SHLLSDVYIKMM 175 + ++++ M+ Sbjct: 190 TERTAELFCYMV 201 >gi|327483724|gb|AEA78131.1| Ribonuclease T [Vibrio cholerae LMA3894-4] Length = 224 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 8 LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 AL+ GI D F L+ S E + ++ A +AHNA FD Sbjct: 68 ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ A +R P P DT +++ + L CK G+ +R H AL Sbjct: 128 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGVEFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQKTAELFCTIVNQWKALG 206 >gi|59711532|ref|YP_204308.1| ribonuclease T [Vibrio fischeri ES114] gi|197335112|ref|YP_002155688.1| ribonuclease T [Vibrio fischeri MJ11] gi|59479633|gb|AAW85420.1| ribonuclease T (RNase T) [Vibrio fischeri ES114] gi|197316602|gb|ACH66049.1| ribonuclease T [Vibrio fischeri MJ11] Length = 222 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 21/200 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53 + KN+ R +V D+ET G ++K D ++EI AV + K T + P G Sbjct: 10 LLKNRFRGYFPVVIDVETAGFNAKTDALLEICAVTLAMDEQGNLKPATTIHFHVTPFEGA 69 Query: 54 KNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVG 104 EAL+ +GI D F L+ + E + + Q A +AHNA FD Sbjct: 70 NIEKEALEFNGIRDPFSPLRGAVTEDVALKEIFKLVRKEQKQHDCQRAIMVAHNAHFDHS 129 Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ R + + P P DT +I+ + L CK G+ + H AL Sbjct: 130 FVMEAAARTKLKRIPFHPFCTFDTAAISGLAL--GQTVLAKACKTAGMDFDGKEAHSALY 187 Query: 163 DSHLLSDVYIKMMVGGSQIN 182 D+ ++++ +++ + Sbjct: 188 DTEKTAELFCRIVNKWKDLG 207 >gi|329903276|ref|ZP_08273408.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548440|gb|EGF33116.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480] Length = 216 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 10/207 (4%) Query: 14 IETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD 72 ETTG+ DR+ E+ A+ ++ +R F + + R SP +L GIT + Sbjct: 4 FETTGMSPALGDRVTEVAALRIVGGVVVDR-FVSLINCDVR-ISPFISQLTGITQAMVDR 61 Query: 73 KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR 132 P + E F AHN FD F+ AE R+ P +I ++ ++RR Sbjct: 62 APPVEQVMPELVRFIGSD--ALAAHNVSFDEKFLLAESARLGIVPAHAG-VICSVKLSRR 118 Query: 133 KHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDR 191 P R L +L GI + H A D+ + S + + + ++G + + R Sbjct: 119 VFPGLRSYALGALANSLGIRFKG-TAHRAEADAEVASALMLHI-AAHLGDHYGIREVDPR 176 Query: 192 FFKEEKK-TVPNISLLKRDKPLFTRIT 217 F ++ + T + + P ++ Sbjct: 177 FLQQINRLTAAKVPAFLQRPPATDNVS 203 >gi|321309654|ref|YP_004191983.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str. Langford 1] gi|319801498|emb|CBY92144.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma haemofelis str. Langford 1] Length = 1393 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 15/197 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 VFDIETTGL+ D I EI + + + T+ + L ITDE Sbjct: 351 YCVFDIETTGLNPLFDEITEIAIYKYSNKRRIA-TYHSYFK-ISEPLKQHIKDLTHITDE 408 Query: 69 FLKDKP-SFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDT 126 L +K + E DF Q + +AHN +FD F+NA+ ++ +PL + +IDT Sbjct: 409 LLAEKGQDLEVVLKEVKDF--TQGSVLVAHNGIEFDFPFLNAKYIKLGMEPLS-NPLIDT 465 Query: 127 LSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI-----KMMVGG 178 L +++ + + L ++CKR G+ H A D +L V++ K+ G Sbjct: 466 LRLSQTIFSEEKYKSHSLGAICKRVGVEYDLEHAHSADFDVDVLWQVFMYSLEPKLKEWG 525 Query: 179 SQINFGFKTNEDRFFKE 195 + G K D F + Sbjct: 526 VNLEDGLKEANDAVFNK 542 >gi|78044638|ref|YP_360855.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus hydrogenoformans Z-2901] gi|77996753|gb|ABB15652.1| putative DNA polymerase III, epsilon subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 222 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 89/171 (52%), Gaps = 8/171 (4%) Query: 7 MRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + V D+ETTGL + D II IGAV++++ + T F ++ P R+ +L GI Sbjct: 36 LTYTVIDLETTGLKPFQGDEIIAIGAVKIINGNITRPAFHAYVNPQ-REIPEVVQRLTGI 94 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + +++ P ++ + DF +N+ + H+ FD+ F+N L + L P R++D Sbjct: 95 SPKTVQNAPPLTNTLTTLLDF--ARNSVIVGHSVNFDLAFLNKHLSSLTGKKLTP-RLLD 151 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ + P N L + +++ I++ R H AL D+ + + V++ + Sbjct: 152 TVDLGIYLFPREPNYSLENFAQKFAISLQGR--HTALGDAVICAKVFLNFL 200 >gi|226197921|ref|ZP_03793495.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pakistan 9] gi|237813373|ref|YP_002897824.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei MSHR346] gi|254181036|ref|ZP_04887634.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1655] gi|184211575|gb|EDU08618.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 1655] gi|225930109|gb|EEH26122.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei Pakistan 9] gi|237506315|gb|ACQ98633.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei MSHR346] Length = 381 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAAEHRITEIGVVVVN--ANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I ++ + + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAGALFERLDGK--LFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|116491119|ref|YP_810663.1| Rad3-related DNA helicase [Oenococcus oeni PSU-1] gi|118586913|ref|ZP_01544346.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163] gi|290890627|ref|ZP_06553698.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429] gi|116091844|gb|ABJ56998.1| 3'-5' exonuclease domain and Rad3-related DNA helicase [Oenococcus oeni PSU-1] gi|118432640|gb|EAV39373.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163] gi|290479755|gb|EFD88408.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429] Length = 489 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 11/205 (5%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D+ETT + II+IG + ++ N FQ + P G K + + L GI +E + Sbjct: 9 IVDLETTAPFKEGGHIIQIGISFVKNWKIINN-FQTMVNP-GVKIPEQIVDLTGIKNEDV 66 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P F + D + ++AHN ++D ++N E RI L +DT+ +A Sbjct: 67 ENAPYFEDLARMIHDQLS--GTVFVAHNVRYDFPYLNGEFARIKMRRL-RLEYVDTVQLA 123 Query: 131 RRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM---MVGGSQINFGFK 186 + P + L+ L + GI + H A D+ + +++K+ + Q Sbjct: 124 QIVFPTMNSYKLDELVSKLGINLP--RHHRADQDASATAQLFLKIHEHLQEFPQNTLNNL 181 Query: 187 TNEDRFFKEEKKTVPNISLLKRDKP 211 N + +T+ +S KR P Sbjct: 182 INHSKSLLGNTETIFQLSKGKRTFP 206 >gi|167739715|ref|ZP_02412489.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 14] Length = 323 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAAEHRITEIGVVVV--NANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I ++ + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAGALFERLD--GKLFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|126438667|ref|YP_001059957.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668] gi|126218160|gb|ABN81666.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG catalytic domain protein [Burkholderia pseudomallei 668] Length = 381 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG + RI EIG V + + T+ + P + P +L GITD Sbjct: 16 AFVDLETTGGSAAEHRITEIGVVVVN--ANGVSTWTTLVDPQ-QPIPPFIQQLTGITDAM 72 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F+ I ++ + + ++AHNA FD GF+ AE +R ++ T+ + Sbjct: 73 VRGAPTFADIAGALFERLDGK--LFVAHNASFDRGFLRAEFERAGIAFNPD--VLCTVRL 128 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R P SR+ L++L +R+ + S ++H AL D+ L+ + K+ Sbjct: 129 SRALFPRESRHGLDALIERHALAPS--ARHRALADADLIWQFWQKL 172 >gi|291300433|ref|YP_003511711.1| exonuclease RNase T and DNA polymerase III [Stackebrandtia nassauensis DSM 44728] gi|290569653|gb|ADD42618.1| Exonuclease RNase T and DNA polymerase III [Stackebrandtia nassauensis DSM 44728] Length = 410 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 101/256 (39%), Gaps = 29/256 (11%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 VFD ETTG+ + RIIEI V D T+ L P+ R P+ +HGI Sbjct: 2 YAVFDTETTGIIPGMHHRIIEIAVVLADDEGSIENTWSTLLNPD-RDLGPQ--HIHGIKA 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126 + D P F I + + + +AHN FD+ F++AE +R+ + + T Sbjct: 59 RQVIDAPKFGDIAGQLIQMLSGR--TLVAHNLPFDLRFLSAEFERLGHQLTYNHHLGVCT 116 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS-QINFGF 185 ++ + + L CK G+ ++ H AL D+ + + + + + Sbjct: 117 MNWSTTFLEGASRSLPECCKAAGVQLTG--WHSALSDAEATAALLKHYINAARGGVPWHD 174 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPL----------------FTRITKEELDEHDKTIQ 229 + R V N + +R+ R+ E+ D + Sbjct: 175 RLPLSRSCTWPTVPVTNAHVRQRESVPHKPSHGDPFISALVDYLPRVQSSEVS--DPYLA 232 Query: 230 TLGKNAIWDRYISSNQ 245 L + A+ DRY+S+++ Sbjct: 233 VLDE-ALSDRYLSADE 247 >gi|291535622|emb|CBL08734.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis M50/1] Length = 235 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 9/200 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+E TGL++K D I+E+GAV + ++ ++ + K + +L GIT+ Sbjct: 4 YVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDKFGA--ILCQNVKIPEKVTELTGITEA 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ +F++F E + N FD GF+ N + +DTL Sbjct: 62 MVQGGMEKEEAMRQFFEFIGED--IIVGQNVIFDYGFLKQWAVNHNMPLERNA--VDTLK 117 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR+ P + DL SLC +G+ + H A D++ VY + + + G Sbjct: 118 LARKFLPKEQKKDLESLCACFGVKREN--AHRAFDDAYETWQVYEALRERYEEESAGDFM 175 Query: 188 NEDRFFKEEKKTVPNISLLK 207 + +K +K+T +K Sbjct: 176 PKPLLYKAKKQTPATARQIK 195 >gi|157370439|ref|YP_001478428.1| ribonuclease T [Serratia proteamaculans 568] gi|157322203|gb|ABV41300.1| ribonuclease T [Serratia proteamaculans 568] Length = 226 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V DIET G ++K D ++EI AV L + + + T + P G P Sbjct: 24 RFRGFYPVVIDIETAGFNAKTDALLEIAAVTLKMDEDGWLQQDETLHFHVEPFEGANLQP 83 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF ++ +AHNA FD F+ A Sbjct: 84 EALAFNGIDPSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAA 143 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L C I H AL D+ Sbjct: 144 AERASLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAADIPFDSAQAHSALYDTEQT 201 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 202 AQLFCELVNRWKRLG 216 >gi|113460646|ref|YP_718712.1| ribonuclease T [Haemophilus somnus 129PT] gi|123327179|sp|Q0I251|RNT_HAES1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|112822689|gb|ABI24778.1| RNAse T [Haemophilus somnus 129PT] Length = 218 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGR 53 + KN+ R ++ D+ET G +++ D ++E+ A+ L + + P G Sbjct: 13 LLKNRFRGFFPVIIDVETAGFNAQTDALLELAAITLKMDENGLLVPDEKCHFHIQPFEGA 72 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 +PE+LK +GI D L+ S + SE + + Q + +AHNA FD F Sbjct: 73 NINPESLKFNGIDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNATFDQSF 132 Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A +R I ++P P I DT +++ + L C+ I+ + H AL D Sbjct: 133 VMAAAERTKIKRNPFHPFSIFDTATLSGFMF--GQTVLVKGCQVANISFDGKKAHSALYD 190 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ M+ ++ Sbjct: 191 AERTAELFCYMVNHLKKLG 209 >gi|305667231|ref|YP_003863518.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170] gi|88708165|gb|EAR00403.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170] Length = 454 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 9/160 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI A+ D + F + P + P + L GI ++ Sbjct: 2 YTILDIETTGGKYNEEGITEI-AIHKFDGHQVVDKFISLVNPE-KDIQPFVVNLTGINNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + + +++ +AHNA+FD + E +R+ + + + T+ Sbjct: 60 MLRTAPKFHEVAKRIVEI--TEDSVLVAHNAQFDYRILRTEFRRLGYNF--ERKTLCTVD 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +++ P L L + GI +S R H A D+ Sbjct: 116 LSKYLLPDAESYSLGKLVRSLGIPMSDR--HRANGDAIAT 153 >gi|224476576|ref|YP_002634182.1| hypothetical protein Sca_1089 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421183|emb|CAL27997.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 895 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 8/169 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + V D+ETTG D II+IG + + + ++ + + P L I Sbjct: 3 QTTYAVVDLETTGNQKDYDDIIQIG-ITFVKGFEIVGSYHSLIK-TDLEIPPFIQALTSI 60 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 D+ L P F+ + E ++ +++ ++AHN FD+ F+ ++ N P ++ID Sbjct: 61 EDQMLTQAPYFNEVAEEIYELM--KDSVFVAHNVAFDLTFLKKAFKKSNI-TYQPRKVID 117 Query: 126 TLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 T+ + + P L+ L + + I + + H A D+ + + IK Sbjct: 118 TVELFKIAFPTDKSYQLSELAEYHDIPLEN--AHRADEDAATTAKLMIK 164 >gi|120436992|ref|YP_862678.1| exonuclease domain-containing protein [Gramella forsetii KT0803] gi|117579142|emb|CAL67611.1| protein containing exonuclease domain [Gramella forsetii KT0803] Length = 507 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 9/169 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + + DIETTG K +RI EI + + + + + + P+ L GI D Sbjct: 5 KFAITDIETTGNGIKGNRITEICVIVVQNGKVIDE-YSSLVNPSQA-IPLYIETLTGIND 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + + P FS I E ++ ++AHN FD I AE +++D + + T+ Sbjct: 63 EMVFNAPQFSEIADEITKI--TKDCIFVAHNVNFDYNIIRAEFASLDRDF--KRKRLCTV 118 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + ++ P L ++C I I H +H A D ++ + + Sbjct: 119 RLTKKLIPGLFSYSLGNICT--SINIPHIDRHRAKGDCDATVTLFQRCI 165 >gi|238787143|ref|ZP_04630943.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641] gi|238724931|gb|EEQ16571.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641] Length = 228 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 22/201 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI AV + + T + P G PEAL + Sbjct: 30 PVVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVDPFEGANLQPEALAFN 89 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI + + + +IF +Q +AHNA FD F+ A +R + Sbjct: 90 GIDPTNPLRGAVSEYDALHAIFKAVRKGLKDQGCNRAIIVAHNAHFDHSFVMAAAERASL 149 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI H AL D+ + ++ + Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCE 207 Query: 174 MM-----VGGSQINFGFKTNE 189 ++ +GG + G +E Sbjct: 208 LVNRWKKLGGWPVPAGESESE 228 >gi|51596620|ref|YP_070811.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953] gi|81825791|sp|Q66A36|RNT_YERPS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|51589902|emb|CAH21534.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953] Length = 215 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++++D ++EI AV + + T + P G PEAL + Sbjct: 19 PVVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFN 78 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI + + + +IF ++ +AHNA FD F+ A +R + Sbjct: 79 GIDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI H AL D+ + ++ + Sbjct: 139 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCE 196 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 197 LVNRWKKLG 205 >gi|70726458|ref|YP_253372.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435] gi|123660231|sp|Q4L6F9|DING_STAHJ RecName: Full=Probable ATP-dependent helicase dinG homolog gi|68447182|dbj|BAE04766.1| probable ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435] Length = 900 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + +K + T+ + P L I D Sbjct: 6 YAVVDLETTGNQLDYDEIIQIG-ITFVSNNKISGTYHSMIR-TDLDIPPFIQALTSIEDT 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I E + ++ ++AHN FD+ FI Q N D P +++DTL Sbjct: 64 MLEQAPYFHEIAQEIYKQLKDR--VFVAHNVDFDLNFIKKAFQNCNID-FKPKKVLDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + +P L+ L + + I + + H A D+ + + IK Q+ Sbjct: 121 LFKIAYPTDKSYQLSELAEAHDIPLDN--AHRADEDATTTALLMIKAFQKFEQLPI 174 >gi|260437725|ref|ZP_05791541.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876] gi|292809747|gb|EFF68952.1| DNA polymerase III PolC-type [Butyrivibrio crossotus DSM 2876] Length = 234 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 10/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL +++IIE+GAV D ++ + + P G ++ GI D+ Sbjct: 5 FVAIDLETTGLSPYDNKIIELGAVRYRDGKPVDQ-YNTLINP-GVHIPERITEITGIDDD 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P +F N + HN FD FI L + IDTL Sbjct: 63 MVSKAPYIDDELDRIMEFIG--NDVILGHNVIFDYTFIAGALA--GHSIEYSAEAIDTLK 118 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 A++ P + +L LC+ + I H H A D+ ++VY ++ Sbjct: 119 FAKKVLPANESKNLEHLCEMFDIVTIH---HRAYEDAMSAANVYFRL 162 >gi|225870177|ref|YP_002746124.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] gi|225699581|emb|CAW93205.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] Length = 823 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI + + V D+E T II++G V +++ + ++Q + P+ S Sbjct: 1 MINEFSQKYAVIDLEATSPGP-TASIIQVGIV-IVEGKEIVDSYQTDINPH-EPLSDHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS + ++ ++ ++AHN FD + L D L P Sbjct: 58 ALTGITDQQLAQAPDFSQVARTIFELI--EDCVFVAHNVTFDANLLAEALFLEGYDLLTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +PS + L+ L + + +S H A+ D+ ++++IK++ Sbjct: 116 --RVDTVELAQIFYPSLEKYSLSHLSEVLDLNLSD--AHTAIADAQATANLFIKLLHKIE 171 Query: 180 QI 181 + Sbjct: 172 SL 173 >gi|195977857|ref|YP_002123101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974562|gb|ACG62088.1| probable ATP-dependent helicase DinG [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 821 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI + + V D+E T II++G V +++ + ++Q + P+ S Sbjct: 1 MINEFSQKYAVIDLEATSPGP-TASIIQVGIV-IIEGKEIVDSYQTDVNPH-EPLSDHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS + ++ ++ ++AHN FD + L D L P Sbjct: 58 ALTGITDQQLAQAPDFSQVARTIFELI--EDCVFVAHNVTFDANLLAEALFLEGYDLLTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +PS + L+ L + + +S H A+ D+ ++++IK++ Sbjct: 116 --RVDTVELAQIFYPSLEKYSLSHLSEVLDLNLSD--AHTAIADAQATANLFIKLLHKIE 171 Query: 180 QI 181 + Sbjct: 172 SL 173 >gi|194467815|ref|ZP_03073801.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23] gi|194452668|gb|EDX41566.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23] Length = 283 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 88/167 (52%), Gaps = 11/167 (6%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ETTGL D+II++ A++ +D + TF + P+G N+ ++ ++ I++ Sbjct: 15 YVSVDTETTGLYPMYGDKIIQLSAIKYIDDKLVD-TFDTLINPDGSNNNAKS--VNNISE 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 LK++P+F + +F +F ++ W+ HN FD F+ + + + + +DTL Sbjct: 72 SSLKNQPTFDEVIGDFVNFV--EDLPWVGHNLSFDFSFLKS--EELKIASFKKNS-VDTL 126 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IAR + + N L L K++ I ++ H +L D+ + + +Y + Sbjct: 127 QIARSIYGNKGNKLQQLAKKFNIDY--KNLHNSLYDAQIAASLYQHL 171 >gi|25011356|ref|NP_735751.1| hypothetical protein gbs1312 [Streptococcus agalactiae NEM316] gi|24412894|emb|CAD46971.1| Unknown [Streptococcus agalactiae NEM316] Length = 604 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 93/173 (53%), Gaps = 10/173 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K R I FDIET GL+S+ DRI+E+GAV + K +++ + S + +L+ I Sbjct: 50 KNRFIAFDIETPGLNSQQDRIVEVGAVLFENG-KVVDSYESLVN-AKVNISADVTRLNNI 107 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 T+ +K+ PS + ++ E +F + AHNAKFD+GF+ L R+ + + Sbjct: 108 TNRMIKNAPSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLGYN--GEIK 165 Query: 123 IIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DTLS++R+ RN N++ + + + +++ H A D+ + ++ K+ Sbjct: 166 YLDTLSLSRKNVKGLRNYKQNTVAEYFNLQ--NKNSHRAKSDAIICGNILTKL 216 >gi|221135181|ref|ZP_03561484.1| ribonuclease T [Glaciecola sp. HTCC2999] Length = 212 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 24/204 (11%) Query: 1 MIRKNKMR-------KIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLC 49 M+ ++R ++ D+ET G +++ D ++EI AV + ++ + Sbjct: 1 MLSTPELRDRFRHYFPVIIDVETAGFNAQTDALLEIAAVTVRMDEAGMLHPDQEIHYHIN 60 Query: 50 P-NGRKNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAK 100 P G P A++ +GI D L+ + N Q + +AHNA Sbjct: 61 PFEGANIEPAAIEFNGIKVDCALRGAVDETEAMKGLSKAISKLQKAANCQRSVIVAHNAS 120 Query: 101 FDVGFINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 FD+ F+NA L R N + P P DT S+A + L C+ I + H Sbjct: 121 FDMSFVNAALARTNVKRSPFHPFVSFDTTSLAALTL--GQTVLVKACEAANIAFDQKQAH 178 Query: 159 GALLDSHLLSDVYIKMMVGGSQIN 182 GAL D+ ++++ MM + Sbjct: 179 GALYDAQRTAELFCFMMNRYQSLG 202 >gi|89094681|ref|ZP_01167617.1| ribonuclease T [Oceanospirillum sp. MED92] gi|89081027|gb|EAR60263.1| ribonuclease T [Oceanospirillum sp. MED92] Length = 209 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 90/211 (42%), Gaps = 25/211 (11%) Query: 3 RKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRK 54 N+ R +V D+ET G +S+ D ++EI AV + + +++F+ + P G Sbjct: 1 MANRFRGFLPVVVDVETAGFNSRTDALLEIAAVTLTMDENGFLMIDQSFEAQVEPFEGAN 60 Query: 55 NSPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFI 106 AL GI E + ++ + IF + HNA FD GF+ Sbjct: 61 LEQSALDFTGIDPYDPDREAVPERDAMEEIFKPVRKAIKAHGCKRAVLVGHNASFDQGFV 120 Query: 107 NAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 NA R I ++P P DT ++ + L C+ GI + H AL D+ Sbjct: 121 NAAANRADIKRNPFHPFSTFDTATLGGLAF--GQTVLARACQVAGIEFDGKQAHSALYDT 178 Query: 165 HLLSDVYIKMM-----VGGSQINFGFKTNED 190 ++++ ++ +GG ++ F+ +E+ Sbjct: 179 MKTAELFCLIVNRWKELGGWEMAESFQDDEE 209 >gi|330444105|ref|YP_004377091.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58] gi|328807215|gb|AEB41388.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58] Length = 249 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 11/226 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ + D E TGLD K DRIIEI V + + + + + P ++ S E+ Sbjct: 1 MVLLKNAVFVCLDCEMTGLDVKKDRIIEIAIVRFT-FERILDSIEFLINPE-KEVSIESQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++H I++ LK++P F++++ + F + + + H+ FD+ + E++R+ + Sbjct: 59 RIHHISNAMLKNQPKFAAVYPKIKAFLKDDD-NIVGHSVGFDLQVLAQEVERLGETFPTK 117 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +IDTL +A+ S N L SL + + H A+ D + ++ + Sbjct: 118 YHVIDTLRLAKEYGDSPNNSLESLAVHFNVPYDGN--HRAMKDVEINISIFKHLCKRFHT 175 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDK 226 I + R + + + L K F+ I L K Sbjct: 176 IE------QIRQVLAKPIKMKYMPLGKHKGRCFSEIPLAYLQWAAK 215 >gi|293363994|ref|ZP_06610730.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma alligatoris A21JP2] gi|292552484|gb|EFF41258.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma alligatoris A21JP2] Length = 1432 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 7/177 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FDIETTGL + IIE GA + + S R Q F+ + S L GITD+ Sbjct: 401 YISFDIETTGLSPRYHEIIEFGASIIKNGSIVARE-QFFIK-ASKPLSSFTTNLTGITDK 458 Query: 69 FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L ++ + F + A +AHNA+FD+ F+ +L N + +DTL Sbjct: 459 MLQEEGIELKTALERILKLFENKIA--LAHNAQFDMNFVFQKLLD-NCYAIPSISFVDTL 515 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 I+R P+ ++ L GI S H A D+ +L+ +I + +Q+N Sbjct: 516 MISRIIFPNKSKHRLGDYTSNLGINYSVDDAHRADYDAEILAQAWIASISHLAQLNL 572 >gi|329298346|ref|ZP_08255682.1| ribonuclease T [Plautia stali symbiont] Length = 222 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 48/212 (22%), Positives = 82/212 (38%), Gaps = 22/212 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +++ D ++EI A ++ + + T + P G +P Sbjct: 13 RFRGFYPVVIDVETAGFNAQTDALLEIAATTLKMDEDGWLHRDETLHFHVEPFEGAILNP 72 Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109 EAL GI L+ S + A +AHNA FD F+ A Sbjct: 73 EALAFTGIDPSNPLRGAVSEYEALHAIFKMVRKGTKDSGCNRAIIVAHNATFDHNFLMAT 132 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L CK GI H AL D+ Sbjct: 133 AERTGMKRNPFHPFATFDTAALSGLVL--GQTVLAKACKAAGIDFDSTQAHSALYDTKQT 190 Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFK 194 + ++ +++ +GG + + ED Sbjct: 191 ATLFCELVNRWKRLGGWPLAVSEEPAEDDASA 222 >gi|332523978|ref|ZP_08400230.1| exonuclease DnaQ family/helicase DinG family [Streptococcus porcinus str. Jelinkova 176] gi|332315242|gb|EGJ28227.1| exonuclease DnaQ family/helicase DinG family [Streptococcus porcinus str. Jelinkova 176] Length = 820 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 13/176 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M K + V D+E T ++ +D RII+IG V +++ K +FQ + P+ K S Sbjct: 1 MTEK-LTKYAVIDLEAT--NAGSDARIIQIGIV-IVEDKKIINSFQTDINPHS-KLSEHI 55 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L GITD+ L P FS + E ++ ++ ++AHN KFD ++ L D L Sbjct: 56 KSLTGITDQQLATAPEFSQVAGEIFELI--KDCVFVAHNVKFDANLLSEALFFEGFDLLT 113 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P +DT+ +A+ P+ + +L L K + +SH H A+ D+ + ++IK+ Sbjct: 114 P--RVDTVELAQVFFPNLEKYNLGHLAKNMDLNLSH--AHTAISDALATAKLFIKI 165 >gi|153949552|ref|YP_001400734.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758] gi|166991091|sp|A7FHK6|RNT_YERP3 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|152961047|gb|ABS48508.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758] Length = 215 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++++D ++EI AV + + T + P G PEAL + Sbjct: 19 PVVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFN 78 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI + + + +IF ++ +AHNA FD F+ A +R + Sbjct: 79 GIDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI H AL D+ + ++ + Sbjct: 139 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCE 196 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 197 LVNRWKKLG 205 >gi|127512449|ref|YP_001093646.1| ribonuclease T [Shewanella loihica PV-4] gi|126637744|gb|ABO23387.1| RNAse T [Shewanella loihica PV-4] Length = 257 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 21/217 (9%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKN 55 K++ R +V D+ET G +++ D ++EI +++ D ++T + P G Sbjct: 31 KHRFRGYFPVVIDVETAGFNAQTDALLEIAVTLLKMDDNGDLVLDKTLHYHIEPFEGANL 90 Query: 56 SPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107 PEAL +GI + +K +F IF E N +AHNA FD GF+ Sbjct: 91 EPEALAFNGIDPSNPLRGAVSEKEAFLEIFKEVKKHQKASNCHRSIIVAHNAAFDHGFVT 150 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 ++R + + P P DT +++ L C+ GI ++ H AL D+ Sbjct: 151 QAIERNALKRTPFHPFATFDTAALSGLAL--GHTVLAKACEIAGIPFDNKEAHSALYDTE 208 Query: 166 LLSDVYIKMMVGGSQI-NFGFKTNEDRFFKEEKKTVP 201 ++++ ++ + + T + +E + P Sbjct: 209 RTAELFCHIVNKWKALGGWPVATPSEETGSDEAASEP 245 >gi|189501071|ref|YP_001960541.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1] gi|189496512|gb|ACE05060.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1] Length = 180 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + R + D+ETTGL + DR+IE+ AV +++ F + N K+H Sbjct: 9 QRERVVAVDVETTGLSPLRGDRVIEVAAVAIVNG-VIEEHFCCLINVN-APIPTVVQKIH 66 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT E L + +++ EF +F IAHNA FD+ FI ELQ + L+ S+ Sbjct: 67 GITPELLAGEKPPEAVWPEFLNFIGSN--ILIAHNAPFDISFIRNELQLLGLSLLNGSQ- 123 Query: 124 IDTLSIARRKHPSSR-NDLNSLCKR-YGITISHRSKHGALLDSHLLSDVYIKM 174 TL+ +R+K P + + L+++ + G H A D+ L + ++ + Sbjct: 124 -CTLAFSRKKFPQLKSHKLDNVARHVLGGMPKGIKLHRASGDALLTAMIWQAI 175 >gi|295135414|ref|YP_003586090.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] gi|294983429|gb|ADF53894.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87] Length = 282 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 10/166 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD ET ++ +G VE + K R F + P +P A+++HGIT E Sbjct: 5 FVVFDFET----ARGKNPCSLGMVEYKNGKK-YREFYELINPEVAYFNPFAIQIHGITYE 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ + +FS ++ F + +AHNAKFD + LQR D + P TL Sbjct: 60 DVQHERNFSELWDAMLPFI--EGKTLVAHNAKFDNAVLLYSLQRYGID-VPPYASFCTLQ 116 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ARR L+SL + + H AL D+ + ++++K+ Sbjct: 117 RARRLVALPSYKLSSLANFF--EVPQLRHHNALEDAFVCGELFLKL 160 >gi|330967688|gb|EGH67948.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091] Length = 203 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R EI V + R FQ + G + L GI+ Sbjct: 3 RVAVIDFETTGISPSPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +ARR P + L +L + + + H A+ D+ + +++ + Sbjct: 117 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 165 >gi|237801479|ref|ZP_04589940.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] gi|330873519|gb|EGH07668.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331024338|gb|EGI04395.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6] Length = 203 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R EI V + R FQ + G + L GI+ Sbjct: 3 RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +ARR P + L +L + + + H A+ D+ + +++ + Sbjct: 117 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 165 >gi|331018941|gb|EGH98997.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 204 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R EI V + R FQ + G + L GI+ Sbjct: 4 RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 62 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 117 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +ARR P + L +L + + + H A+ D+ + +++ + Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 166 >gi|152990071|ref|YP_001355793.1| DNA polymerase III subunit epsilon [Nitratiruptor sp. SB155-2] gi|151421932|dbj|BAF69436.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2] Length = 276 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + +V DIET G + ++IEIGA++ + +R F+ F+ KL G Sbjct: 66 QEQEFVVVDIETNGSKPEFSQVIEIGAIKFKGNTIIDR-FESFI--YAEDVPEYISKLTG 122 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I E L++ PS + F +F Q+A ++AHN +FD FI+++L+++ + L +R + Sbjct: 123 ILQEDLENAPSQKEVLLSFKEFL--QDAVFVAHNVRFDYNFISSKLEQLGLEKLA-NRKL 179 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++ +AR+ S R L L + GI + H A D+ + Sbjct: 180 CSIDLARKTIESERYGLEFLNETLGINTA--VSHRAYADALTAYKILQ 225 >gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736] gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736] Length = 623 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 9/204 (4%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ET+GL DR++ + + L F L P P + +HG+T L Sbjct: 35 VDVETSGLRPGRDRVLSLAILTLDARGNQTGEFATLLNPGC---DPGPVHIHGLTPARLA 91 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P+F I + + + +AHNA+FD F+ E + + + SR + TL++ R Sbjct: 92 GAPTFEEIAPQVGALLSGR--VLVAHNAQFDYDFLAHEFAHV-RSWVPVSRRLCTLALNR 148 Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 ++ + L +L YG+ H A D +LS + + ++ + Sbjct: 149 LVGSATPDLKLGTLAAHYGVR--QERAHDAQDDVRVLSGILRGSLGAAERLGLSLPLLDC 206 Query: 191 RFFKEEKKTVPNISLLKRDKPLFT 214 ++ + VP R+ FT Sbjct: 207 PPRQDYQPYVPKTPCAYRNPGRFT 230 >gi|238757732|ref|ZP_04618915.1| Ribonuclease T [Yersinia aldovae ATCC 35236] gi|238703975|gb|EEP96509.1| Ribonuclease T [Yersinia aldovae ATCC 35236] Length = 226 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++K D ++EI AV + + T + P G PEAL + Sbjct: 30 PVVIDVETAGFNAKTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFN 89 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI + + + +IF EQ +AHNA FD F+ A +R + Sbjct: 90 GIDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNANFDHSFVMAAAERASL 149 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI H AL D+ + ++ + Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCE 207 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 208 LVNRWKKLG 216 >gi|332993984|gb|AEF04039.1| ribonuclease T [Alteromonas sp. SN2] Length = 218 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAV--ELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++ D ++EI AV ++ + ++TF + P G P AL+ + Sbjct: 17 PVVIDVETAGFNAGTDALLEIAAVTVKMEEDGLIYPDQTFHYHVDPFEGANLEPAALEFN 76 Query: 64 GITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI L+ S + Q + +AHNA FD F+NA + R N Sbjct: 77 GIDPHCALRGAIEESEAMKSLCKGIRKAQKDADCQRSVIVAHNATFDQSFVNAAIARCNI 136 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT S+A + L C+ GI + H AL D+ ++++ Sbjct: 137 KRTPFHPFVSFDTTSLAGLTL--GQTVLVKACRAAGIEFDQKEAHSALYDAQKTTELFCF 194 Query: 174 MMVGGSQIN 182 M+ + Sbjct: 195 MVNRYKALG 203 >gi|318060238|ref|ZP_07978961.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG] gi|318076974|ref|ZP_07984306.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF] Length = 647 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 11/204 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ET+GL ++ DR++ + V + + F + P P + +HG+T E L Sbjct: 19 VDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDPGC---DPGPVDVHGLTRERLS 75 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P+F I Q+ +AHNA+FD F+ E R + L +R + TL++ R Sbjct: 76 GAPAFGQIAGRLGAML--QDRVLVAHNAQFDYDFLAHEFARA-RLYLPVTRRLCTLALNR 132 Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN--FGFKTN 188 + P +R+ L SL YG+ + H AL D+ +L+ ++ + ++++ F T Sbjct: 133 QVDPPTRDMKLGSLAAHYGVPRT--RAHDALDDTRVLAGIFRATLREAARLDLPLPFVTC 190 Query: 189 EDRFFKEEKKTVPNISLLKRDKPL 212 R + P R+ Sbjct: 191 PPRQDPQFAPQPPKTPCAYRNPGR 214 >gi|213966786|ref|ZP_03394937.1| exonuclease [Pseudomonas syringae pv. tomato T1] gi|301383295|ref|ZP_07231713.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13] gi|302062466|ref|ZP_07254007.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40] gi|302133448|ref|ZP_07259438.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928636|gb|EEB62180.1| exonuclease [Pseudomonas syringae pv. tomato T1] Length = 204 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R EI V + R FQ + G + L GI+ Sbjct: 4 RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 62 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 117 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +ARR P + L +L + + + H A+ D+ + +++ + Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 166 >gi|332161660|ref|YP_004298237.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665890|gb|ADZ42534.1| ribonuclease T [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864087|emb|CBX74161.1| ribonuclease T [Yersinia enterocolitica W22703] Length = 232 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI AV + + T + P G PEAL + Sbjct: 30 PVVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFN 89 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI + + + +IF EQ +AHNA FD F+ A +R + Sbjct: 90 GIDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASL 149 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI H AL D+ + ++ + Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCE 207 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 208 LVNRWKKLG 216 >gi|39996485|ref|NP_952436.1| exonuclease [Geobacter sulfurreducens PCA] gi|39983365|gb|AAR34759.1| exonuclease [Geobacter sulfurreducens PCA] gi|298505487|gb|ADI84210.1| 3'-to-5' exonuclease, putative [Geobacter sulfurreducens KN400] Length = 181 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 9/172 (5%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 KN + D+ETTGL DR++E+ AV L+D + F + + Sbjct: 1 MKNHHLQAAIDVETTGLFPGYGDRVVEVAAV-LVDEGQIVSEFSSLIR-VTKAIPRHVSM 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT++ L D+P ++ DF A +AHNA+FD+ F+ E R+ S Sbjct: 59 IHGITNDMLADQPLPEEVYPALGDFIGT--ALLVAHNARFDLAFLRHEFGRLGLSL--NS 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKR-YGITISHRSKHGALLDSHLLSDVY 171 R TL +ARR+ P + + L ++ + +G H AL D+ L + V+ Sbjct: 115 RSACTLELARRRLPELTDHRLETVYQHLFGAVPEGTRCHRALDDARLTARVW 166 >gi|291287762|ref|YP_003504578.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] gi|290884922|gb|ADD68622.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM 12809] Length = 205 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 10/176 (5%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPE 58 I +++ VFD ETTG+ K R++EIGAV++ + +F + P Sbjct: 4 IPFDQLTFTVFDTETTGMSPDKGARLLEIGAVKVKPGLVLDLQDSFCTLINPK-APIPYN 62 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 A +HGI+ + DKP + F+ F +N AHNA+FD F++ Sbjct: 63 AYSVHGISTAMVADKPEIKDVLPGFFSF--TENTIIAAHNARFDCSFVSHHSAECCIVN- 119 Query: 119 DPSRIIDTLSIARRKHPSSR-NDLNSLCKRY--GITISHRSKHGALLDSHLLSDVY 171 ++I+DT+ +A+ H + L +L + I + +H AL D+ + + Sbjct: 120 PMTKIVDTVKLAKSAHSGLKSYSLGNLIHYFSMDIPLPDTYRHRALYDAAHTALLL 175 >gi|293396307|ref|ZP_06640585.1| ribonuclease T [Serratia odorifera DSM 4582] gi|291421096|gb|EFE94347.1| ribonuclease T [Serratia odorifera DSM 4582] Length = 226 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 22/202 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V DIET G +++ D ++EI AV + + + + T + P G P Sbjct: 24 RFRGFYPVVIDIETAGFNARTDALLEIAAVTLKMDQDGWLQQDETLHFHVEPFEGANLQP 83 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF +Q +AHNA FD F+ A Sbjct: 84 EALAFNGIDPHNPLRGAVSEYDALHAIFKAVRKGIKDQGCNRAIIVAHNANFDHSFLMAA 143 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L C G+ H AL D+ Sbjct: 144 AERAGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAAGMAFDSSQAHSALYDTEQT 201 Query: 168 SDVYIKMM-----VGGSQINFG 184 + ++ +++ +GG + G Sbjct: 202 ALLFCELVNRWKRLGGWPLAVG 223 >gi|289450465|ref|YP_003475243.1| DNA polymerase III subunit alpha, Gram-positive type [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185012|gb|ADC91437.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 1495 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 14/174 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCPNGRKNSPEALKLHG 64 + D+ETTGLD +R+IEIGA + + S + + TF L P K +KL G Sbjct: 445 YVALDVETTGLDPVKERVIEIGAAKFVRNSSGEYEVSETFHRMLNPE-VKLPEFIMKLTG 503 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR---INKDPLDPS 121 IT + + DF + AHNA FD+GFI AE R IN L + Sbjct: 504 ITQAEVDSGIKPLQAVQDLIDFVG--DLPVCAHNAMFDIGFIRAEGFRTQDINDPKLKFN 561 Query: 122 RI-IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 I IDTL ++ PS S + L+++C I ++H H A+ D+ ++ + Sbjct: 562 PITIDTLRLSVLFWPSLSNHKLDTVCNFLQIDLAHH--HRAVDDAIACGQIFAR 613 >gi|238782582|ref|ZP_04626613.1| Ribonuclease T [Yersinia bercovieri ATCC 43970] gi|238796368|ref|ZP_04639877.1| Ribonuclease T [Yersinia mollaretii ATCC 43969] gi|238716509|gb|EEQ08490.1| Ribonuclease T [Yersinia bercovieri ATCC 43970] gi|238719813|gb|EEQ11620.1| Ribonuclease T [Yersinia mollaretii ATCC 43969] Length = 226 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 22/196 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI AV + + T + P G PEAL + Sbjct: 30 PVVIDVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFN 89 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI + + + +IF +Q +AHNA FD F+ A +R + Sbjct: 90 GIDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASL 149 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI H AL D+ + ++ + Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCE 207 Query: 174 MM-----VGGSQINFG 184 ++ +GG I G Sbjct: 208 LVNRWKKLGGWPIPAG 223 >gi|297578613|ref|ZP_06940541.1| ribonuclease T [Vibrio cholerae RC385] gi|297536207|gb|EFH75040.1| ribonuclease T [Vibrio cholerae RC385] Length = 249 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 27 LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 86 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 AL+ GI D F L+ S E + ++ A +AHNA FD Sbjct: 87 ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 146 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ A +R P P DT +++ + L CK G+ +R H AL Sbjct: 147 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 204 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 205 YDTQKTAELFCTIVNQWKALG 225 >gi|260913082|ref|ZP_05919564.1| ribonuclease T [Pasteurella dagmatis ATCC 43325] gi|260632669|gb|EEX50838.1| ribonuclease T [Pasteurella dagmatis ATCC 43325] Length = 221 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 90/199 (45%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGR 53 + KN+ R ++ D+ET G ++K D ++E+ A V++ D + ++ + P G Sbjct: 17 LLKNRFRGYFPVIIDVETAGFNAKTDALLELAAITVKMDDNGLLQPDQKCHFHIEPFEGA 76 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 +PE+L+ +GI L+ S + +E + + Q + +AHNA FD F Sbjct: 77 NINPESLQFNGIDIHNPLRGAVSETHAITELFRMVRKGQKDADCQRSIIVAHNAVFDQSF 136 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 I A +R ++P P + DT +++ + L C+ I + H AL D Sbjct: 137 IMAAAERTGVKRNPFHPFGMFDTATLSGFML--GQTVLVKACQVAKIPFDGKQAHSALYD 194 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ M+ + Sbjct: 195 TERTTELFCYMVNHLKSLG 213 >gi|73662598|ref|YP_301379.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642618|sp|Q49XR1|DING_STAS1 RecName: Full=Probable ATP-dependent helicase dinG homolog gi|72495113|dbj|BAE18434.1| putative ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 900 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + T+ + + P L I ++ Sbjct: 6 YAVVDLETTGNQLDYDEIIQIGITFVRENKIIG-TYHSMIK-TDLEIPPFIQALTSIEED 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F I + + + ++AHN FD+ FI ++ + + P +++DTL Sbjct: 64 MLNQAPYFHEIAEDIYKQID--GCIFVAHNVAFDLNFIKKSFKQCHINY-RPKKVMDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + P L+ L + +GI +++ H A D+ + + I Sbjct: 121 LFKVAFPTDKSYQLSELAEAHGIILNN--AHRADEDAATTAQLMI 163 >gi|167747300|ref|ZP_02419427.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662] gi|167653278|gb|EDR97407.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662] Length = 234 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 10/170 (5%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR + FD+ETTGL + D++IEIGAV++ + + + + P R+ S ++L GI Sbjct: 1 MREYVAFDLETTGLSVEEDQVIEIGAVKVKNGKIAGK-YNCIIYPE-REVSDFIIRLTGI 58 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + L F F + + HN FD F+ +R +D Sbjct: 59 TRKMLDGGIPMREGVEGFLAF--SEGYPVLGHNLMFDYRFMKTAAKRFRYAFEKEG--VD 114 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 TL AR L+SLC+ Y +++ H A D+ + V+ M Sbjct: 115 TLRAARLLLRGLESKKLSSLCEHYH--YVNQAAHRAYDDALATAVVFESM 162 >gi|108807723|ref|YP_651639.1| ribonuclease T [Yersinia pestis Antiqua] gi|108811999|ref|YP_647766.1| ribonuclease T [Yersinia pestis Nepal516] gi|162420848|ref|YP_001606979.1| ribonuclease T [Yersinia pestis Angola] gi|165926445|ref|ZP_02222277.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016] gi|165938652|ref|ZP_02227208.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275] gi|166010664|ref|ZP_02231562.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001] gi|166211013|ref|ZP_02237048.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004] gi|167400761|ref|ZP_02306267.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422151|ref|ZP_02313904.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424940|ref|ZP_02316693.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270490511|ref|ZP_06207585.1| ribonuclease T [Yersinia pestis KIM D27] gi|294503612|ref|YP_003567674.1| ribonuclease T [Yersinia pestis Z176003] gi|108775647|gb|ABG18166.1| RNAse T [Yersinia pestis Nepal516] gi|108779636|gb|ABG13694.1| RNAse T [Yersinia pestis Antiqua] gi|162353663|gb|ABX87611.1| ribonuclease T [Yersinia pestis Angola] gi|165913526|gb|EDR32147.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275] gi|165921666|gb|EDR38863.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016] gi|165990366|gb|EDR42667.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001] gi|166208193|gb|EDR52673.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004] gi|166958963|gb|EDR55984.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049614|gb|EDR61022.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056127|gb|EDR65905.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262361655|gb|ACY58376.1| ribonuclease T [Yersinia pestis D106004] gi|262365605|gb|ACY62162.1| ribonuclease T [Yersinia pestis D182038] gi|270339015|gb|EFA49792.1| ribonuclease T [Yersinia pestis KIM D27] gi|294354071|gb|ADE64412.1| ribonuclease T [Yersinia pestis Z176003] Length = 226 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++++D ++EI AV + + T + P G PEAL + Sbjct: 30 PVVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFN 89 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI + + + +IF ++ +AHNA FD F+ A +R + Sbjct: 90 GIDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASL 149 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI H AL D+ + ++ + Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCE 207 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 208 LVNRWKKLG 216 >gi|225868805|ref|YP_002744753.1| ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] gi|225702081|emb|CAW99711.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] Length = 821 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI + + V D+E T II++G V +++ + ++Q + P+ S Sbjct: 1 MINEFSQKYAVIDLEATSPGP-TASIIQVGIV-IIEGKEIVDSYQTDVNPH-EPLSDHIK 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS + ++ ++ ++AHN FD + L D L P Sbjct: 58 ALTGITDQQLAQAPDFSQVARTIFELI--EDCVFVAHNVTFDANLLAEALFLEGYDLLTP 115 Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P + L+ L + + +S H A+ D+ ++++IK++ Sbjct: 116 --RVDTVELAQIFYPCLEKYSLSHLSEVLDLNLSD--AHTAIADAQATANLFIKLLHKIE 171 Query: 180 QI 181 + Sbjct: 172 SL 173 >gi|167623615|ref|YP_001673909.1| ribonuclease T [Shewanella halifaxensis HAW-EB4] gi|167353637|gb|ABZ76250.1| ribonuclease T [Shewanella halifaxensis HAW-EB4] Length = 231 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGA-VELLDYSKT---NRTFQVFLCP-NGR 53 + KN+ R +V D+ET G ++K D ++EI + +D ++T + P G Sbjct: 9 LLKNRFRGYFPVVIDVETAGFNAKTDALLEIAVSMLKMDDEGVLSLDKTLHFNIEPFEGS 68 Query: 54 KNSPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGF 105 PEAL GI + +K +F IF E +AHNA FD GF Sbjct: 69 NLEPEALAFTGIDPTSPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGF 128 Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + ++R + + P P DT ++A L C GI +R H AL D Sbjct: 129 VTQAIERNALKRTPFHPFATFDTAALAGLAI--GHTVLAKACAMAGIAFDNREAHSALYD 186 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ ++ + Sbjct: 187 TERTAELFCLIVNRWKALG 205 >gi|330684981|gb|EGG96656.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus epidermidis VCU121] Length = 902 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + T+ + P L I + Sbjct: 6 YAVVDLETTGNQLDYDDIIQIGITFVRQNKIIG-TYHSMIR-TDLDIPPFIQALTSIEET 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I + + Q+ ++AHN FD+ FI + N P R++DTL Sbjct: 64 MLEQAPYFKEIAQDIYQQL--QDCVFVAHNVAFDLNFIKKAFKNCNIKY-RPKRVMDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + P L+ L + + I +++ H A D+ + + IK Q+ Sbjct: 121 LFKIAFPTDKSYQLSELAEAHDIPLNN--AHRADEDATTTAHLMIKAFEKFEQLPL 174 >gi|302184787|ref|ZP_07261460.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae 642] Length = 203 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 9/177 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 L +ARR P + L +L + + H A+ D+ + +++ + + Q + Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTVHLTNELRQTH 172 >gi|12044881|ref|NP_072691.1| DNA polymerase III PolC [Mycoplasma genitalium G37] gi|1352298|sp|P47277|DPO3_MYCGE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|3844641|gb|AAC71247.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma genitalium G37] gi|166078825|gb|ABY79443.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic Mycoplasma genitalium JCVI-1.0] Length = 1451 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 7/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + + ++FDIETTGL + D +IE A ++ + S+ + Q FL + + + Sbjct: 409 TKLSDATFVIFDIETTGLHGRYDDVIEFSARKIKNNSEIDHQ-QFFLKID-KPIPKTITE 466 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120 + ITDE L+ + ++ + + +AHN FD+ F+ + ++ N PL Sbjct: 467 ITKITDEMLEGGIDQQQGLEKIRNYLD--DCVMVAHNGINFDLPFLQTQFEKYNIKPL-T 523 Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + +IDTL ++ +P S + L+++C + + H A D+ L V+ Sbjct: 524 NPLIDTLCLSWALNPLFSSHTLSNICSKLKLEFDDERLHRAEYDTEALKKVF 575 >gi|317471044|ref|ZP_07930419.1| exonuclease [Anaerostipes sp. 3_2_56FAA] gi|316901485|gb|EFV23424.1| exonuclease [Anaerostipes sp. 3_2_56FAA] Length = 234 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 10/170 (5%) Query: 7 MR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 MR + FD+ETTGL + D++IEIGAV++ + + + + P R+ S ++L GI Sbjct: 1 MREYVAFDLETTGLSVEEDQVIEIGAVKVKNGKIAGK-YNCIIYPE-REVSDFIIRLTGI 58 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + L F F + + HN FD F+ +R +D Sbjct: 59 TRKMLDGGIPMREGVEGFLAF--SEGYPVLGHNLMFDYRFMKTAAKRFRYAFEKEG--VD 114 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 TL AR L+SLC+ Y +++ H A D+ + V+ M Sbjct: 115 TLRAARLLLRGLESKKLSSLCEHYH--YVNQAAHRAYDDALATAVVFESM 162 >gi|123442415|ref|YP_001006394.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166200024|sp|A1JP36|RNT_YERE8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|122089376|emb|CAL12224.1| ribonuclease T [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 215 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI AV + + T + P G PEAL + Sbjct: 19 PVVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFN 78 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI + + + +IF EQ +AHNA FD F+ A +R + Sbjct: 79 GIDPTNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI H AL D+ + ++ + Sbjct: 139 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCE 196 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 197 LVNRWKKLG 205 >gi|260779364|ref|ZP_05888256.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450] gi|260605528|gb|EEX31823.1| ribonuclease T [Vibrio coralliilyticus ATCC BAA-450] Length = 219 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NG 52 + K + R +V D+ET G ++K D ++EI AV L + T + P G Sbjct: 8 LTLKKRFRGYFPVVIDVETAGFNAKTDALLEICAVTLKMDENGELQPASTIHFHVEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 EAL +GI D F L+ S E + ++ A +AHNA FD Sbjct: 68 ANLEKEALDFNGIHDPFSPLRGAVPESEALKEIYKLVRKEQKAADCSRAIMVAHNATFDH 127 Query: 104 GFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ A +R + + P P DT +++ + + L CK G+ ++ H AL Sbjct: 128 NFVMAASERSKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMDFDNKEAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTLKTAELFCGIVNKWKALG 206 >gi|322376366|ref|ZP_08050859.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. M334] gi|321282173|gb|EFX59180.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. M334] Length = 816 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 10/175 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D +R + + P+ KL G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGKIVDR-YTTDVNPH-EPLDAHIKKLTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P FS + + +D +N ++AHN +FD + L + +P +DT+ Sbjct: 64 RRLAQAPDFSQVARKIFDLV--ENGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + + P + L LC+ GI + H H AL D+ +++ + + +Q+ Sbjct: 120 ELTQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLLFLREKMAQL 172 >gi|159897533|ref|YP_001543780.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC 23779] gi|159890572|gb|ABX03652.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 282 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 94/173 (54%), Gaps = 9/173 (5%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + ++FD+E+TGLD + RI E+ A+ + +R + + P R+ P A + Sbjct: 21 LHTIPFVLFDMESTGLDVQIGHRICEMAAMRIQGREIIDRC-EFLVNPQ-REIDPAAFAV 78 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 +GI+ E + + PSF I+ + F+E A +AHNA FD+GF+ +EL RI+ PL+ Sbjct: 79 NGISAEMVANAPSFGEIWPKVNKLFHE--AVLVAHNAYFDIGFLTSELSRIDLPPLET-P 135 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +IDTL++ARR + R +L SL G H A+ D L V+ ++ Sbjct: 136 VIDTLALARRYITARRYNLTSLATNLG---EKAPSHRAMSDVVALRPVFEHLL 185 >gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14] gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14] Length = 653 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 11/205 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ET+GL ++ DRI+ I + + + P P + +HG+T E L+ Sbjct: 22 VDVETSGLIARRDRILSIAVLTFGPDGTQTGEYSTLVNPGC---DPGPVHIHGLTAERLR 78 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 D P+F + Q+ +AHNA+FD F+ E R + L ++ + TL++ R Sbjct: 79 DAPAFEQVAGRIGALL--QDRVMVAHNAQFDYDFLAHEFARA-RLCLPVNQRLCTLALNR 135 Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R P + + L SL YG+ H AL D+ +L+ ++ + ++++ Sbjct: 136 RVEPPAADLSLASLAAHYGVP--QTRAHDALDDTRVLAGIFRSSLSEAARLDVPLPLVPC 193 Query: 191 RFFKEEK--KTVPNISLLKRDKPLF 213 ++ + P R+ Sbjct: 194 PPRQDPRFAPKPPKSPCAYRNPGRP 218 >gi|186895675|ref|YP_001872787.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+] gi|186698701|gb|ACC89330.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+] Length = 226 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++++D ++EI AV + + T + P G PEAL + Sbjct: 30 PVVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFN 89 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI + + + +IF ++ +AHNA FD F+ A +R + Sbjct: 90 GIDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASL 149 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI H AL D+ + ++ + Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCE 207 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 208 LVNRWKKLG 216 >gi|225021279|ref|ZP_03710471.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC 33806] gi|224946012|gb|EEG27221.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC 33806] Length = 2493 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 9/194 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG DRI+E+ V L D + + + P R S A +HGIT + Sbjct: 2099 YAVVDVETTGFS-TADRIVELAIVVLDDDGENLYEWSTLINP-MRDISNGA--IHGITAK 2154 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127 + P+F + + + ++AHNA FDV + +E R+ IDTL Sbjct: 2155 DVAVAPTFDQVADDVAALL--EGKIFVAHNAIFDVRMLKSEFDRVGLKMAGLADGHIDTL 2212 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P S L+S GIT H AL D+ + + ++ + + Sbjct: 2213 RLAQNSLPISSRSLDSCLAFMGITNE--QAHSALSDARATGRLLTRFLLDELPNSARSVS 2270 Query: 188 NEDRFFKEEKKTVP 201 + ++ P Sbjct: 2271 VTGDAMQPSREVYP 2284 >gi|160874893|ref|YP_001554209.1| ribonuclease T [Shewanella baltica OS195] gi|160860415|gb|ABX48949.1| ribonuclease T [Shewanella baltica OS195] gi|315267130|gb|ADT93983.1| ribonuclease T [Shewanella baltica OS678] Length = 223 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 24/201 (11%) Query: 4 KNKMRK-------IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-N 51 NK++ +V D+ET G +S+ D ++EI +++ + ++T + P Sbjct: 7 ANKLKYRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFE 66 Query: 52 GRKNSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDV 103 G PEAL +GI L+ S F E + + +AHNA FD Sbjct: 67 GANLEPEALAFNGIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDH 126 Query: 104 GFINAELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 GF++ ++R + P P DT ++A L C GI ++ H AL Sbjct: 127 GFVSKAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACIMAGIPFDNKEAHSAL 184 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 185 YDTERTAELFCHIVNRWKSLG 205 >gi|153000260|ref|YP_001365941.1| ribonuclease T [Shewanella baltica OS185] gi|304409837|ref|ZP_07391457.1| ribonuclease T [Shewanella baltica OS183] gi|307304193|ref|ZP_07583946.1| ribonuclease T [Shewanella baltica BA175] gi|166200019|sp|A6WM39|RNT_SHEB8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|151364878|gb|ABS07878.1| ribonuclease T [Shewanella baltica OS185] gi|304352355|gb|EFM16753.1| ribonuclease T [Shewanella baltica OS183] gi|306913091|gb|EFN43514.1| ribonuclease T [Shewanella baltica BA175] Length = 223 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 24/201 (11%) Query: 4 KNKMRK-------IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-N 51 NK++ +V D+ET G +S+ D ++EI +++ + ++T + P Sbjct: 7 ANKLKYRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFE 66 Query: 52 GRKNSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDV 103 G PEAL +GI L+ S F E + + +AHNA FD Sbjct: 67 GANLEPEALAFNGIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDH 126 Query: 104 GFINAELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 GF++ ++R + P P DT ++A L C GI ++ H AL Sbjct: 127 GFVSKAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACIMAGIPFDNKEAHSAL 184 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 185 YDTERTAELFCHIVNRWKSLG 205 >gi|238792291|ref|ZP_04635926.1| Ribonuclease T [Yersinia intermedia ATCC 29909] gi|238728528|gb|EEQ20047.1| Ribonuclease T [Yersinia intermedia ATCC 29909] Length = 226 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 22/196 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI AV + + T + P G PEAL + Sbjct: 30 PVVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFN 89 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI + + + +IF +Q +AHNA FD F+ A +R + Sbjct: 90 GIDPTNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASL 149 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI H AL D+ + ++ + Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCE 207 Query: 174 MM-----VGGSQINFG 184 ++ +GG I G Sbjct: 208 LVNRWKKLGGWPIPAG 223 >gi|305680841|ref|ZP_07403648.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] gi|305659046|gb|EFM48546.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] Length = 2479 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 9/194 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG DRI+E+ V L D + + + P R S A +HGIT + Sbjct: 2085 YAVVDVETTGFS-TADRIVELAIVVLDDDGENLYEWSTLINP-MRDISNGA--IHGITAK 2140 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127 + P+F + + + ++AHNA FDV + +E R+ IDTL Sbjct: 2141 DVAVAPTFDQVADDVAALL--EGKIFVAHNAIFDVRMLKSEFDRVGLKMAGLADGHIDTL 2198 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P S L+S GIT H AL D+ + + ++ + + Sbjct: 2199 RLAQNSLPISSRSLDSCLAFMGITNE--QAHSALSDARATGRLLTRFLLDELPNSAQSVS 2256 Query: 188 NEDRFFKEEKKTVP 201 + ++ P Sbjct: 2257 VTGDAMQPSREVYP 2270 >gi|331002519|ref|ZP_08326037.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410335|gb|EGG89769.1| hypothetical protein HMPREF0491_00899 [Lachnospiraceae oral taxon 107 str. F0167] Length = 235 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 103/232 (44%), Gaps = 16/232 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + + I D+ET+G+ ++D+IIE+G +++ D T+ TF + P + + E L+L Sbjct: 1 MSTLNYIAIDLETSGIKLRSDKIIEVGLLKIKDSHITD-TFSCLINPEI-EINEEILRLT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI L + S + + +F ++ + + HN FD FI E R + + Sbjct: 59 GIKKRELYNAESINEVIGHIVEFC--EDYDLLGHNTVFDYSFIKREASRAGL--VFDKKG 114 Query: 124 IDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +DT + ++ P + +L C+ +GI ++ H A D++ ++ K+M N Sbjct: 115 LDTYKLCKKILPADIKKNLTDACRYFGIE--RKNPHRAFSDAYYTHLLFQKIMENFPDFN 172 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 F + E + K I + KR K ++ + I L ++ Sbjct: 173 FSPEHMEVKLKK-------FIPIRKRTKEDLQKLLNCHRIGYKVNIDLLSES 217 >gi|294155324|ref|YP_003559708.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli MP145] gi|291600469|gb|ADE19965.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli MP145] Length = 1447 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 7/180 (3%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + + FDIETTGL + +IE GA + + S +R Q F+ S + L GI Sbjct: 413 EQEYVCFDIETTGLSPRYHELIEFGATIIKNGSVISRE-QFFIKAKN-SLSAFTINLTGI 470 Query: 66 TDEFLKDKP-SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 TD+ LK++ + F + A +AHN+ FD+ F+ + NK + + I Sbjct: 471 TDQMLKNEGLELKPALLKISKLFENRIA--VAHNSTFDMNFLFQKFLD-NKMEIPKTTFI 527 Query: 125 DTLSIARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL ++R S++ L + R GI + + H A D+ +L++ +I M ++IN Sbjct: 528 DTLVVSRLLFSKDSKHRLENYVGRLGIIYNSDAAHRADYDAEILANAWIPSMNLLAEINI 587 >gi|15641021|ref|NP_230652.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227081180|ref|YP_002809731.1| ribonuclease T [Vibrio cholerae M66-2] gi|254848136|ref|ZP_05237486.1| ribonuclease T [Vibrio cholerae MO10] gi|298498880|ref|ZP_07008687.1| ribonuclease T [Vibrio cholerae MAK 757] gi|9655469|gb|AAF94167.1| ribonuclease T [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227009068|gb|ACP05280.1| ribonuclease T [Vibrio cholerae M66-2] gi|254843841|gb|EET22255.1| ribonuclease T [Vibrio cholerae MO10] gi|297543213|gb|EFH79263.1| ribonuclease T [Vibrio cholerae MAK 757] Length = 243 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 27 LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 86 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 AL+ GI D F L+ S E + ++ A +AHNA FD Sbjct: 87 ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 146 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ A +R P P DT +++ + L CK G+ +R H AL Sbjct: 147 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 204 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 205 YDTQKTAELFCTIVNQWKALG 225 >gi|145598067|ref|YP_001162143.1| ribonuclease T [Yersinia pestis Pestoides F] gi|170024107|ref|YP_001720612.1| ribonuclease T [Yersinia pseudotuberculosis YPIII] gi|145209763|gb|ABP39170.1| RNAse T [Yersinia pestis Pestoides F] gi|169750641|gb|ACA68159.1| ribonuclease T [Yersinia pseudotuberculosis YPIII] Length = 226 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++++D ++EI AV + + T + P G PEAL + Sbjct: 30 PVVIDVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFN 89 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI + + + +IF ++ +AHNA FD F+ A +R + Sbjct: 90 GIDPTNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASL 149 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI H AL D+ + ++ + Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLAAGIPFDSSQAHSALYDTLQTAKLFCE 207 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 208 LVNRWKKLG 216 >gi|295695291|ref|YP_003588529.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912] gi|295410893|gb|ADG05385.1| DNA polymerase III, epsilon subunit [Bacillus tusciae DSM 2912] Length = 250 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPN-GRKNSPEALK 61 +++ +VFD ETTG D + D +IEIGAV + + + ++TF + GR+ + Sbjct: 53 LDRLTYVVFDTETTGFDWRTDALIEIGAVRVENGQVREDQTFSSLIALEPGRRVPEVVRR 112 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + G++++ L P + S F F +A +AH+A DV F+N L + L P Sbjct: 113 ITGLSEQELWRAPKVQDVLSRFMAF--SSDAVLVAHHAGHDVNFLNVPLNQFYGIEL-PR 169 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 R++DT +ARR P L+ L +R I R H AL D+ L + ++ Sbjct: 170 RVVDTAQVARRLWPDTGEATLDYLIERMAIPPLTR--HRALNDALLTARIW 218 >gi|291531551|emb|CBK97136.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium siraeum 70/3] Length = 361 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 7/164 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIETTGL ND IIEIGA+ + D F + + S ++ GITD+ L Sbjct: 11 IVDIETTGLSPDNDNIIEIGALRVRDNKIVAD-FSQLIK-ASKPLSKTISQITGITDDML 68 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D S+F F + N + HN FD FI+ + D + DTL+ Sbjct: 69 ADAKELDDTLSDFLRFVD--NDTVVGHNIAFDANFISKKCVAYGLDF--KNDTYDTLAAC 124 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++++P + L + + GI H AL D + + + Sbjct: 125 KQEYPDVSHKLEDMIIQLGIK-DSGIHHRALADCYHTHSLMTAL 167 >gi|238854632|ref|ZP_04644962.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 269-3] gi|260664425|ref|ZP_05865277.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US] gi|282932977|ref|ZP_06338374.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] gi|238832422|gb|EEQ24729.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 269-3] gi|260561490|gb|EEX27462.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US] gi|281303012|gb|EFA95217.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus jensenii 208-1] Length = 936 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 8/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG DRII+ G + + +T+ + P L GI Sbjct: 10 FAVVDLETTGTRRGQDRIIQFGCAIIKNRQII-KTYSFLINPE-ADIPQAVQNLTGIKPT 67 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + ++P F ++ D Q+ ++AHN FD+ F+NAEL N P +R IDT+ Sbjct: 68 DVINQPVFKKYAAQIEDIL--QDTVFVAHNINFDLPFLNAELA-ANSFPKLHNRAIDTVE 124 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +++ P+ L+ L + + + H + H A D++ + + +K+ Sbjct: 125 LSKIAFPTLPSYRLSDLT--HSLNLKHTNPHQADSDAYATASLLLKI 169 >gi|255689883|ref|ZP_05413558.1| exonuclease [Bacteroides finegoldii DSM 17565] gi|260624488|gb|EEX47359.1| exonuclease [Bacteroides finegoldii DSM 17565] Length = 183 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 9/171 (5%) Query: 9 KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I D ET TG K I E G + D K T + P G S +++HGI Sbjct: 6 FIAIDFETATG---KRASICEAGICVVRDG-KIVETRSWLVRPQGNSYSYWNMQIHGIRP 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 D P F +++E + + +AHNA FD+G I L+ + L+ +L Sbjct: 62 NDTADSPEFPEVWTEISKYLKDIP-VLVAHNAAFDIGCIRHSLELYGMEKLEI-TYYCSL 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 AR+ + N L+ LC ++ I H A D+ + + +++K + Sbjct: 120 RAARKLYSFGCNSLDYLCDQFRIPY--GQHHRAGDDAEMCARLFLKELEDA 168 >gi|218548753|ref|YP_002382544.1| ribonuclease T [Escherichia fergusonii ATCC 35469] gi|218356294|emb|CAQ88912.1| ribonuclease T (RNase T) [Escherichia fergusonii ATCC 35469] gi|324113426|gb|EGC07401.1| ribonuclease T [Escherichia fergusonii B253] gi|325497162|gb|EGC95021.1| ribonuclease T [Escherichia fergusonii ECD227] Length = 215 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++K D ++EI A+ L + + T + P G PEAL + Sbjct: 19 PVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDNTLHFHVEPFEGANLQPEALAFN 78 Query: 64 GITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI +++ + +IF + +AHNA FD GF+ A R + Sbjct: 79 GIDPNDPQRGAVREYDALHAIFKMVRKGIKDTGCNRAIMVAHNATFDHGFLMAAANRASL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L+ C G+ H AL D+ + ++ + Sbjct: 139 KRNPFHPFVTFDTAALSGLAL--GQTVLSKACTAAGMAFDSTQAHSALYDTEQTAMLFCE 196 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 197 IVNRWKRLG 205 >gi|297566609|ref|YP_003685581.1| DNA polymerase III subunit epsilon [Meiothermus silvanus DSM 9946] gi|296851058|gb|ADH64073.1| DNA polymerase III, epsilon subunit [Meiothermus silvanus DSM 9946] Length = 252 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 12/179 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + + IIEI + L + + FQ F+ P G P +L GIT Sbjct: 80 VVLDLETTGLSALENEIIEIAFIRLE--GEKRQVFQRFVNP-GSPIPPFISRLTGITHRD 136 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P ++ E +++ I NA FD+GF+ R+ + +IDT++ Sbjct: 137 LEGAPDVYTVLEEALPLL--EDSVLIIQNAPFDLGFLRPRFLRLGYK--MDNEVIDTVAW 192 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL---SDVYIKMMVGGSQINFG 184 ARR P S+ L+ L + + + S+H AL D + M+ G + G Sbjct: 193 ARRALPGLSKRGLDHLAWAFDLD-TIVSRHRALGDVEATLLVAKEMYYMLTAGKPLALG 250 >gi|328950488|ref|YP_004367823.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis DSM 14884] gi|328450812|gb|AEB11713.1| DNA polymerase III, epsilon subunit [Marinithermus hydrothermalis DSM 14884] Length = 248 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 13/179 (7%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + D IIE+ + + + + + P GR P +L GI Sbjct: 77 VVLDLETTGLSPERDEIIEVALIRVEGARRL--EYSRLVNP-GRPIPPRITRLTGIRSGD 133 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D+P ++ E + A + NA FD+GF+ +++ + +IDT+ Sbjct: 134 VRDQPDVYTVLEEVVPLL--EGATLVIQNAPFDLGFLRPRFAKLSVTI--RNEVIDTVQW 189 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV---YIKMMVGGSQINFG 184 ARR P R L+ L + + + RS+H A D+ V M+ G G Sbjct: 190 ARRALPGMRRRSLDHLIEVF--EVPKRSRHRAFEDAEATLAVAYELYYMLTAGKARALG 246 >gi|183598873|ref|ZP_02960366.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827] gi|188021081|gb|EDU59121.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827] Length = 213 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++K D ++EI A+ L + + T + P G P AL Sbjct: 19 PVVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSPDETLHFHVEPFEGANLEPAALAFT 78 Query: 64 GITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAELQRIN- 114 GI L+ S + + A +AHNA FD F+ +R Sbjct: 79 GIDPTNPLRGAVSEYEALHAIFKMVRKGMKATDCNRAIIVAHNATFDHSFVMNAAERAGL 138 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI + HGAL D++ + ++ + Sbjct: 139 KRNPFHPFATFDTAALSGLVF--GQTILAKACVAAGIPFDGKQAHGALYDTNRTALLFCE 196 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 197 LVNKWKKLG 205 >gi|146311450|ref|YP_001176524.1| ribonuclease T [Enterobacter sp. 638] gi|166991090|sp|A4W9U3|RNT_ENT38 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|145318326|gb|ABP60473.1| RNAse T [Enterobacter sp. 638] Length = 224 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVDPFEGANLQP 72 Query: 58 EALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109 EAL +GI L+ S + + A +AHNA FD F+ A Sbjct: 73 EALAFNGIDPHNPLRGAVSEYDALHAIYKMVRKGMKDSNCNRAIMVAHNATFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L+ C GI H AL D+ Sbjct: 133 SERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACITAGIDFDGNQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 ++++ +++ ++ Sbjct: 191 AELFCEIVNRWKRLG 205 >gi|320539160|ref|ZP_08038831.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson] gi|320030798|gb|EFW12806.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson] Length = 248 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 22/202 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI AV L + + + T + P G P Sbjct: 45 RFRGFYPVVIDVETAGFNAKTDALLEIAAVTLKMDEGGWLQQDETLHFHVEPFEGANLQP 104 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF + +AHNA FD F+ A Sbjct: 105 EALAFNGIDPHNPLRGAVSEYDALHAIFKTVRAGIKHRGCNRAIIVAHNANFDHSFLMAA 164 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L C G+ H AL D+ Sbjct: 165 AERASLKRNPFHPFATFDTAALSGLVL--GQTVLAKACTAAGMPFDSSQAHSALYDTEQT 222 Query: 168 SDVYIKMM-----VGGSQINFG 184 + ++ +++ +GG + G Sbjct: 223 ALLFCELVNRWKRLGGWPLTLG 244 >gi|254291880|ref|ZP_04962663.1| ribonuclease T [Vibrio cholerae AM-19226] gi|150422240|gb|EDN14204.1| ribonuclease T [Vibrio cholerae AM-19226] Length = 224 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 8 LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 AL+ GI D F L+ S E + ++ A +AHNA FD Sbjct: 68 ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ A +R P P DT +++ + L CK G+ +R H AL Sbjct: 128 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQKTAELFCTIVNQWKALG 206 >gi|229505395|ref|ZP_04394905.1| ribonuclease T [Vibrio cholerae BX 330286] gi|229510935|ref|ZP_04400414.1| ribonuclease T [Vibrio cholerae B33] gi|229512432|ref|ZP_04401905.1| ribonuclease T [Vibrio cholerae TMA 21] gi|229518056|ref|ZP_04407500.1| ribonuclease T [Vibrio cholerae RC9] gi|229529900|ref|ZP_04419290.1| ribonuclease T [Vibrio cholerae 12129(1)] gi|229608414|ref|YP_002879062.1| ribonuclease T [Vibrio cholerae MJ-1236] gi|255744788|ref|ZP_05418739.1| ribonuclease T [Vibrio cholera CIRS 101] gi|262151277|ref|ZP_06028413.1| ribonuclease T [Vibrio cholerae INDRE 91/1] gi|262167159|ref|ZP_06034872.1| ribonuclease T [Vibrio cholerae RC27] gi|14548237|sp|Q9KT97|RNT_VIBCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|229333674|gb|EEN99160.1| ribonuclease T [Vibrio cholerae 12129(1)] gi|229344771|gb|EEO09745.1| ribonuclease T [Vibrio cholerae RC9] gi|229350513|gb|EEO15460.1| ribonuclease T [Vibrio cholerae TMA 21] gi|229350900|gb|EEO15841.1| ribonuclease T [Vibrio cholerae B33] gi|229357618|gb|EEO22535.1| ribonuclease T [Vibrio cholerae BX 330286] gi|229371069|gb|ACQ61492.1| ribonuclease T [Vibrio cholerae MJ-1236] gi|255737819|gb|EET93213.1| ribonuclease T [Vibrio cholera CIRS 101] gi|262024380|gb|EEY43068.1| ribonuclease T [Vibrio cholerae RC27] gi|262030968|gb|EEY49596.1| ribonuclease T [Vibrio cholerae INDRE 91/1] Length = 224 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 8 LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 AL+ GI D F L+ S E + ++ A +AHNA FD Sbjct: 68 ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ A +R P P DT +++ + L CK G+ +R H AL Sbjct: 128 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQKTAELFCTIVNQWKALG 206 >gi|223937241|ref|ZP_03629147.1| DNA-directed DNA polymerase [bacterium Ellin514] gi|223894026|gb|EEF60481.1| DNA-directed DNA polymerase [bacterium Ellin514] Length = 199 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 ++FD+ETTGL S D II+I AV + + + +F ++ P GR S GIT+ Sbjct: 5 YVIFDLETTGLSSYQDEIIQIAAVRMSNGVVCSSDSFFSYVNP-GRSISSFITSYTGITN 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P ++ +F + + A IAHN +FD+ F++A R N P D+ Sbjct: 64 QDVGDAPRVGTVLKDFSRYAGK--ATLIAHNGHRFDMKFLHAGCSR-NALPTRAVNYHDS 120 Query: 127 LSIARRKH---PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + ++R P + L+S+ R I+ +H A D LL++ KM Sbjct: 121 IYLSRLVWGKCPGG-HGLDSVLNRLQISNHGVRRHDARGDVELLAEAVEKM 170 >gi|238762495|ref|ZP_04623465.1| Ribonuclease T [Yersinia kristensenii ATCC 33638] gi|238699140|gb|EEP91887.1| Ribonuclease T [Yersinia kristensenii ATCC 33638] Length = 226 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE----LLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI AV + + T + P G PEAL + Sbjct: 30 PVVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFN 89 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI + + + +IF ++ +AHNA FD F+ A +R + Sbjct: 90 GIDPSNPLRGAVSEHDALHAIFKAVRKGLKDKGCNRAIIVAHNAHFDHSFVMAAAERASL 149 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI H AL D+ + ++ + Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTAKLFCE 207 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 208 LVNRWKKLG 216 >gi|126173968|ref|YP_001050117.1| ribonuclease T [Shewanella baltica OS155] gi|217973711|ref|YP_002358462.1| ribonuclease T [Shewanella baltica OS223] gi|166200018|sp|A3D3D5|RNT_SHEB5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|125997173|gb|ABN61248.1| RNAse T [Shewanella baltica OS155] gi|217498846|gb|ACK47039.1| ribonuclease T [Shewanella baltica OS223] Length = 223 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 24/201 (11%) Query: 4 KNKMRK-------IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-N 51 NK++ +V D+ET G +S+ D ++EI +++ + ++T + P Sbjct: 7 ANKLKYRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDNEGVIGIDKTLHFHIEPFE 66 Query: 52 GRKNSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDV 103 G PEAL +GI L+ S F E + + +AHNA FD Sbjct: 67 GANLEPEALAFNGIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDH 126 Query: 104 GFINAELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 GF++ ++R + P P DT ++A L C GI ++ H AL Sbjct: 127 GFVSKAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACIMAGIPFDNKEAHSAL 184 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 185 YDTERTAELFCHIVNRWKSLG 205 >gi|269215783|ref|ZP_06159637.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122] gi|269130733|gb|EEZ61809.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122] Length = 291 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTGL+ D IIE+ A+ + +T+ FQ + G + S KL G++ Sbjct: 128 YVVVDIETTGLNPNKDEIIELAAIRVRGGRETD-AFQCLVRCGG-ELSDAIAKLTGLSHS 185 Query: 69 FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L + + F +F ++ +AHNA+FD+GFI + + ++ D D + +DTL Sbjct: 186 RLMAEGLILENALMNFLEFVSDD--LIVAHNAEFDIGFIQSACEELDWDDFD-NDYLDTL 242 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++AR+K P S + L+SL +R + + +R H AL D L + +K+ Sbjct: 243 ALARKKLPQISDHRLSSLAER--LHLENRQPHRALSDCRLTHCLLVKL 288 >gi|210634765|ref|ZP_03298293.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279] gi|210158705|gb|EEA89676.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279] Length = 975 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 12/177 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL + + +IEI A L + F F+ P+ E +L IT+ Sbjct: 48 VVLDTETTGLSHRENELIEIAAARLR-GREVVERFDTFIKPH-ALIPAEITELTSITNAD 105 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + PS + DF A IAHNA FD GFI A ++ ID+L++ Sbjct: 106 VAHAPSAEEAVARLADFVG--GAPVIAHNAAFDRGFIEA----VSGGAEVTDIWIDSLAL 159 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +R P S + L S+ + +G + H A D L V+ ++ + G Sbjct: 160 SRIALPRLSSHKLASMAELFGCS---GVSHRANADVEALCGVWRILLCALDDLPSGL 213 >gi|330969506|gb|EGH69572.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. aceris str. M302273PT] Length = 203 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 L +ARR P + L +L + + H A+ D+ + +++ + Q + Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTAHLTNELRQTH 172 >gi|330952959|gb|EGH53219.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae Cit 7] Length = 203 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 L +ARR P + L +L + + H A+ D+ + +++ + Q + Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTAYLTNELRQTH 172 >gi|330976913|gb|EGH76936.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 203 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 L +ARR P + L +L + + H A+ D+ + +++ + Q + Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTAYLTNELRQTH 172 >gi|121728127|ref|ZP_01681163.1| ribonuclease T [Vibrio cholerae V52] gi|121629595|gb|EAX62017.1| ribonuclease T [Vibrio cholerae V52] Length = 212 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 18/190 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI AV L + T + P G AL+ Sbjct: 7 PVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFT 66 Query: 64 GITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRIN 114 GI D F L+ S E + ++ A +AHNA FD F+ A +R Sbjct: 67 GIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCK 126 Query: 115 KD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 127 LKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFC 184 Query: 173 KMMVGGSQIN 182 ++ + Sbjct: 185 TIVNQWKALG 194 >gi|323496850|ref|ZP_08101887.1| ribonuclease T [Vibrio sinaloensis DSM 21326] gi|323318109|gb|EGA71083.1| ribonuclease T [Vibrio sinaloensis DSM 21326] Length = 220 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 8 LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLKMDENGDLQPASTIHFHVEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 EAL G+ D F L+ S E + ++ A +AHNA+FD Sbjct: 68 ANIEKEALDFIGLRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDH 127 Query: 104 GFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ +R + + P P DT +++ + + L CK G+ ++ H AL Sbjct: 128 SFVMQASERSKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMDFDNKEAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQKTAELFCGIVNKWKALG 206 >gi|253573313|ref|ZP_04850656.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] gi|251846841|gb|EES74846.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] Length = 247 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 9/181 (4%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 +++ VFD+ETTG D I+ GA+++ T+ + P + ++L G Sbjct: 60 ELKTAVFDLETTGFHYHYGDEILSFGAIKVEGERITDEVYYSLAKPACQ-IPERIIELTG 118 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT E + PS EF F +++ +AH + D F++ L + K L R++ Sbjct: 119 ITPEMAQSAPSLLEALREFMAFVDDR--VLVAHGSAHDKAFLDVALWKTTKAHLG-HRVL 175 Query: 125 DTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 DT+ IAR+ P R L+ Y I ++ R H AL DS + + ++ ++ + N Sbjct: 176 DTMMIARKLEPDRRISGSLDEWLAVYEIPVTKR--HHALEDSKMTAQLWTALIQRLKEQN 233 Query: 183 F 183 Sbjct: 234 V 234 >gi|108801863|ref|YP_642060.1| DNA polymerase III subunit epsilon [Mycobacterium sp. MCS] gi|119871016|ref|YP_940968.1| DNA polymerase III subunit epsilon [Mycobacterium sp. KMS] gi|108772282|gb|ABG11004.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119697105|gb|ABL94178.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] Length = 330 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 9/164 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ET+G RI+ + A+ + D ++ L P P +HG+T E Sbjct: 17 WAVVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPG---VDPGPTHVHGLTAE 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F + ++ + + +AHN FD F+ AE + + + L ++ T+ Sbjct: 74 MLEGAPRFGDVVADLAELL--RGRTLVAHNVGFDYSFLTAEAELVGAE-LPIDSVMCTVE 130 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +ARR + N L +L +G+ H AL D+ +L+ + Sbjct: 131 LARRLDLGTENLRLETLAAHWGVP--QLKPHDALDDAQVLAQIL 172 >gi|66047527|ref|YP_237368.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae B728a] gi|63258234|gb|AAY39330.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae B728a] Length = 204 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 4 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 62 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRT--REQSFACS 117 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 L +ARR P + L +L + + H A+ D+ + +++ + Q + Sbjct: 118 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTAHLTNELRQTH 173 >gi|170761478|ref|YP_001786710.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A3 str. Loch Maree] gi|169408467|gb|ACA56878.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A3 str. Loch Maree] Length = 855 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 95/168 (56%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E+TG+++ D I++I +++ + + +FQ FL P +K+ ++ +HG +D+F Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLVHGFSDQF 553 Query: 70 LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ + + +F +F ++ + HN FD+ +N+EL+R++ + DTL Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKASFKTYYDTLD 611 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR +PS + + L +L K + +S H A+ D DV + M+ Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657 >gi|289675841|ref|ZP_06496731.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. syringae FF5] Length = 204 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 4 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 62 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 117 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 L +ARR P + L +L + + H A+ D+ + +++ + Q + Sbjct: 118 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTAYLTNELRQTH 173 >gi|144900310|emb|CAM77174.1| DNA polymerase III, epsilon subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 459 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 83/176 (47%), Gaps = 8/176 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60 +++ +V D ETTGLD+ D I+ +GAV + + P GR+ A Sbjct: 250 TLLSQLPVVVLDTETTGLDAARDAIVSVGAVRCHGSRIYRAAMLDLLVNP-GRRIPARAT 308 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGI + + KP ++ E ++ A + H FD+ + +R+ D P Sbjct: 309 AIHGIDESMVAGKPDLAASLPEIAAIMDK--AVVVGHQIGFDLALLRHGTERLGLDWTPP 366 Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +D L ++ P ++++ R G+ IS R H AL D+ + ++++++++ Sbjct: 367 PR-LDILLLSAALAPDESGHEIDDQAARMGVNISGR--HTALGDALVTAELWVRLI 419 >gi|329731357|gb|EGG67723.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus subsp. aureus 21193] Length = 784 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNNQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + E + ++ ++AHN FD+ FI + N P ++IDTL Sbjct: 64 MLQQAPYFNQVAQEIYGKI--KDCIFVAHNVDFDLNFIKKAFKDYNIQY-RPKKVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|323492356|ref|ZP_08097509.1| ribonuclease T [Vibrio brasiliensis LMG 20546] gi|323313403|gb|EGA66514.1| ribonuclease T [Vibrio brasiliensis LMG 20546] Length = 219 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G ++K D ++EI AV L + T + P G Sbjct: 8 LTLKKRFRGYFPVVIDVETAGFNAKTDALLEICAVTLKMDENGDLVPASTIHFHVEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 EAL +GI D F L+ + E + ++ A +AHNA FD Sbjct: 68 ANLEKEALDFNGIRDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIMVAHNANFDH 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ +R P P DT +++ + + L CK G+ ++ H AL Sbjct: 128 SFVMEASERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKTAGMEFDNKEAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQKTAELFCGIVNKWKALG 206 >gi|153823922|ref|ZP_01976589.1| ribonuclease T [Vibrio cholerae B33] gi|126518562|gb|EAZ75785.1| ribonuclease T [Vibrio cholerae B33] Length = 227 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 11 LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 70 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 AL+ GI D F L+ S E + ++ A +AHNA FD Sbjct: 71 ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 130 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ A +R P P DT +++ + L CK G+ +R H AL Sbjct: 131 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 188 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 189 YDTQKTAELFCTIVNQWKALG 209 >gi|330961648|gb|EGH61908.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326] Length = 203 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPNHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +ARR P + L +L + + + H A+ D+ + +++ + Sbjct: 117 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 165 >gi|28871797|ref|NP_794416.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000] gi|28855049|gb|AAO58111.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 204 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R EI V + R FQ + G + L GI+ Sbjct: 4 RVAVIDFETTGISPNPGCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 62 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 117 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +ARR P + L +L + + + H A+ D+ + +++ + Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAIADAEMAANLTAYLT 166 >gi|330938176|gb|EGH41873.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. pisi str. 1704B] Length = 203 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 L +ARR P + L +L + + H A+ D+ + +++ + Q + Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTAYLTNELRQTH 172 >gi|229523203|ref|ZP_04412610.1| ribonuclease T [Vibrio cholerae TM 11079-80] gi|229339566|gb|EEO04581.1| ribonuclease T [Vibrio cholerae TM 11079-80] Length = 224 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 8 LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 AL+ GI D F L+ S E + ++ A +AHNA FD Sbjct: 68 ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ A +R P P DT +++ + L CK G+ +R H AL Sbjct: 128 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQKTAELFCTIVNQWKALG 206 >gi|313889930|ref|ZP_07823570.1| putative ATP-dependent DNA helicase DinG [Streptococcus pseudoporcinus SPIN 20026] gi|313121696|gb|EFR44795.1| putative ATP-dependent DNA helicase DinG [Streptococcus pseudoporcinus SPIN 20026] Length = 820 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 12/175 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + + + V D+E T ++ +D RII+IG V + + +R FQ + P+ K S Sbjct: 1 MTEQLTKYAVIDLEAT--NAGSDARIIQIGIVIVENKKIIDR-FQTDINPHS-KLSEHIK 56 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS + S+ ++ ++ ++AHN KFD + L + L P Sbjct: 57 SLTGITDQQLASAPEFSQVASQIFELI--KDCVFVAHNVKFDANLLAEALFFEGFELLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT+ +A+ P+ + +L L K + ++H H A+ D+ + ++IK+ Sbjct: 115 --RMDTVELAQVFFPNLEKYNLGHLAKNMDLHLAH--AHTAIDDALATAKLFIKI 165 >gi|328956370|ref|YP_004373703.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2] gi|328456694|gb|AEB07888.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2] Length = 977 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 21/222 (9%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTGL ++D +IEI A +L + F+ F+ P+ + E ++L GI D Sbjct: 50 VVLDTETTGLSRQDDELIEISA-AVLSGREVTERFETFVRPS-KPIPAEIVELTGIRDAD 107 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D P + + F + IAHNA FD FI A + ID+L++ Sbjct: 108 VRDAPPATQAVRDLARFVGGR--PVIAHNAAFDRAFIEA----VPGGSDASDIWIDSLAL 161 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +R P + + L+SL + +G H A D L V+ ++ + + G Sbjct: 162 SRIALPRLASHRLSSLAETFGCA---DVSHRAGDDVRALCGVWRILLCALADLPAGL--- 215 Query: 189 EDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQT 230 + P+++ R P+F+ I E EH Q+ Sbjct: 216 ----LRRLADMHPDVAWSYR--PIFSHIASENPGEHFSLAQS 251 >gi|168179984|ref|ZP_02614648.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum NCTC 2916] gi|182669095|gb|EDT81071.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum NCTC 2916] Length = 855 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 95/168 (56%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E+TG+++ D I++I +++ + + +FQ FL P +K+ ++ +HG +D+F Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTP--KKSVGDSYLVHGFSDQF 553 Query: 70 LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ + + +F +F ++ + HN FD+ +N+EL+R++ + DTL Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVAFDISILNSELERLSLEKASFKTYYDTLD 611 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR +PS + + L +L K + +S H A+ D DV + M+ Sbjct: 612 IARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657 >gi|187251744|ref|YP_001876226.1| DNA polymerase III subunit epsilon [Elusimicrobium minutum Pei191] gi|186971904|gb|ACC98889.1| DNA polymerase III, epsilon subunit [Elusimicrobium minutum Pei191] Length = 201 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 14/186 (7%) Query: 1 MIRKNKM----RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRK 54 MI + K+ + D ETTGL R+ EI + + + + + + P Sbjct: 1 MILREKLIHEVKFAFLDTETTGLSPYDGARLCEIAVIT--NGALIAKSEYGTIINPRCV- 57 Query: 55 NSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN 114 S E + +HGIT+E P F I ++ + HNA FD+ F+ AE R Sbjct: 58 ISQEVINIHGITNEMAAQAPYFEDIAPLLIGLL--TDSVIVCHNADFDIPFLAAEFARCG 115 Query: 115 KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + I+DTL AR+ +N+L + G +S+ H A+ D+ + V+ Sbjct: 116 LR-MPQTVILDTLKFARKNGNFKKNNLGFIVSELG--LSNEGWHRAMADAKMTEKVFYHF 172 Query: 175 MVGGSQ 180 + Q Sbjct: 173 LAAFKQ 178 >gi|227328518|ref|ZP_03832542.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 223 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 22/213 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++E+ AV + + K + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLKPDETLHFHVEPFEGAILEP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 AL +GI + + + IF +Q +AHNA FD F+ A Sbjct: 73 AALAFNGIDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAA 132 Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L C GI H AL D++ Sbjct: 133 AERCSLKRNPFHPFATFDTAALSGLVL--GQTVLAKACITAGIAFDSSQAHSALYDTNQT 190 Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKE 195 + ++ +++ +GG I + ED ++ Sbjct: 191 ALLFCELVNRWKRLGGWPIALEENSLEDASAED 223 >gi|254426843|ref|ZP_05040550.1| ribonuclease T [Alcanivorax sp. DG881] gi|196193012|gb|EDX87971.1| ribonuclease T [Alcanivorax sp. DG881] Length = 228 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 17/196 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNS 56 +R +V D+ET G +S+ D ++EI AV + + + Q + P G Sbjct: 16 LRFRGFLPVVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRIQFHVDPFPGANLE 75 Query: 57 PEALKLHGITD-EFLKDKPSFSS----IFSEFWDFFNEQNA---EWIAHNAKFDVGFINA 108 AL GI L+ S + +F + + HN+ FD GF+NA Sbjct: 76 QAALDFTGIDPSNPLRGAVSEETALKGVFEPIRKAVKQHGCSRAVLVGHNSFFDQGFLNA 135 Query: 109 ELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 R I + P P DT ++A + + L C+ GI S R H AL D+ Sbjct: 136 ATDRADIKRSPFHPFSSFDTATLAGLVY--GQTVLAKACEAAGIRFSQREAHSALYDATR 193 Query: 167 LSDVYIKMMVGGSQIN 182 ++++ M+ + Sbjct: 194 TAELFCSMVNRFKTLG 209 >gi|312795413|ref|YP_004028335.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454] gi|312167188|emb|CBW74191.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454] Length = 281 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 10/165 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 D+ETTG DRI E+G +E+ R + + P + P +L GITD Sbjct: 46 AFVDLETTGGRPGLDRITEVGVIEVDRDG--VRRWSTLVDP-LQPIPPFVQQLTGITDAM 102 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++ P+F ++ +E + +IAHNA+FD GF+ ++I ++ T+ + Sbjct: 103 VRGAPTFDALAAELARRLD--GKLFIAHNARFDHGFLKKAFEQIGIRFDPD--VLCTVRL 158 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +R P SR+ L++L +R ++ R H AL D+ L+ + + Sbjct: 159 SRALFPRESRHGLDALAQRLDLSACGR--HRALADADLVWQFWQR 201 >gi|325579056|ref|ZP_08149012.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392] gi|325159291|gb|EGC71425.1| ribonuclease T [Haemophilus parainfluenzae ATCC 33392] Length = 229 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 25/219 (11%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDGNGNLHPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R ++P P + DT ++A + L C+ I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTATLAGFMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMMVGGSQINFGF----KTNEDRFFKEEKKTV 200 ++++ M+ ++ GF +TNE E + + Sbjct: 192 RTAELFCYMVNHLKELG-GFPHIAQTNETEKTAENQIAL 229 >gi|226948601|ref|YP_002803692.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A2 str. Kyoto] gi|226844461|gb|ACO87127.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A2 str. Kyoto] Length = 855 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 96/175 (54%), Gaps = 8/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +VFD+E+TG++ D I++I +++ + + +FQ FL P +K+ ++ + Sbjct: 489 ELDNENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLV 546 Query: 63 HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +D+FLK+ + + +F +F ++ + HN FD+ +N+EL+R++ + + Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKANFK 604 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL IARR +PS + + L +L K + +S H A+ D DV + M+ Sbjct: 605 TYYDTLDIARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657 >gi|212634649|ref|YP_002311174.1| ribonuclease T [Shewanella piezotolerans WP3] gi|212556133|gb|ACJ28587.1| Ribonuclease T [Shewanella piezotolerans WP3] Length = 235 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKN 55 KN+ R +V D+ET G +SK D ++EI +++ D + ++T + P G Sbjct: 15 KNRFRGYFPVVIDVETAGFNSKTDALLEIAVTMLKMDDDGVLQLDKTLHYHIEPFEGANL 74 Query: 56 SPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFIN 107 PEAL +GI L+ S F E + + +AHNA FD GF++ Sbjct: 75 EPEALAFNGIDPTNPLRGAVSEKEAFLEIFKEVKKAQKASECHRSIIVAHNAAFDHGFVS 134 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 ++R + + P P DT ++A + L C GI +R H AL D+ Sbjct: 135 EAIERNGLKRTPFHPFATFDTAALAGLAI--GQTVLAKACAMAGIPFDNREAHSALYDTE 192 Query: 166 LLSDVYIKMMVGGSQIN 182 ++++ ++ + Sbjct: 193 RTAELFCLIVNRWKSLG 209 >gi|167035772|ref|YP_001671003.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1] gi|166862260|gb|ABZ00668.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1] Length = 201 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 15/186 (8%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R E+ V +L+ + +Q + G L GIT Sbjct: 3 RIAVIDFETTGVSPGAGCRATEVAVV-MLEGGRIVERYQSLMN-AGVPVPAFVAGLTGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ P + +E +F +AHNA FD F + EL RI + P + Sbjct: 61 TAMLRTAPPVDKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELSRIGRSRSQPFA--CS 116 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV------GGS 179 L ++RR P + + L +L + G+ + H A+ D+ + +++ + G Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLP-DTGTAHRAMADAEMAANLLQHLTGVLRQDHGLQ 175 Query: 180 QINFGF 185 Q++ G Sbjct: 176 QLSHGL 181 >gi|330888790|gb|EGH21451.1| exonuclease [Pseudomonas syringae pv. mori str. 301020] gi|330987665|gb|EGH85768.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011360|gb|EGH91416.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 203 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +ARR P + L +L + + + H A+ D+ + +++ + Sbjct: 117 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 165 >gi|260773225|ref|ZP_05882141.1| ribonuclease T [Vibrio metschnikovii CIP 69.14] gi|260612364|gb|EEX37567.1| ribonuclease T [Vibrio metschnikovii CIP 69.14] Length = 218 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 18/190 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G + + D ++EI A+ L + + T + P G AL+ + Sbjct: 19 PVVIDVETAGFNPQTDALLEICAITLCMDEQGDLHPASTLHFHIEPFEGANIEKAALEFN 78 Query: 64 GITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRIN 114 GI D F L+ + E + ++ A +AHNA FD GF+ A +R Sbjct: 79 GIHDPFSALRGAVTEEYALKEIYKQVRKEQKAADCSRAIIVAHNASFDHGFVMAANERCK 138 Query: 115 KD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P P DT +++ + + L CK G+ +R H AL D+ + ++ Sbjct: 139 LKRVPFHPFATFDTAALSGLAY--GQTVLAKACKAAGMEFDNREAHSALYDTQQTAALFC 196 Query: 173 KMMVGGSQIN 182 ++ + Sbjct: 197 GIINKWKALG 206 >gi|147675730|ref|YP_001216478.1| ribonuclease T [Vibrio cholerae O395] gi|153216049|ref|ZP_01950254.1| ribonuclease T [Vibrio cholerae 1587] gi|153826220|ref|ZP_01978887.1| ribonuclease T [Vibrio cholerae MZO-2] gi|124114499|gb|EAY33319.1| ribonuclease T [Vibrio cholerae 1587] gi|146317613|gb|ABQ22152.1| ribonuclease T [Vibrio cholerae O395] gi|149740080|gb|EDM54249.1| ribonuclease T [Vibrio cholerae MZO-2] gi|227012823|gb|ACP09033.1| ribonuclease T [Vibrio cholerae O395] Length = 243 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 27 LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 86 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 AL+ GI D F L+ S E + ++ A +AHNA FD Sbjct: 87 ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 146 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ A +R P P DT +++ + L CK G+ +R H AL Sbjct: 147 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 204 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 205 YDTQKTAELFCTIVNQWKALG 225 >gi|170754352|ref|YP_001780953.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum B1 str. Okra] gi|169119564|gb|ACA43400.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum B1 str. Okra] Length = 855 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 95/175 (54%), Gaps = 8/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +VFD+E+TG++ D I++I +++ + + +FQ FL P +K+ ++ + Sbjct: 489 ELDNENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLV 546 Query: 63 HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +D+FLK+ + + +F +F ++ + HN FD+ +N+EL+R++ + Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKASFK 604 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL IARR +PS + + L +L K + +S H A+ D DV + M+ Sbjct: 605 TYYDTLDIARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657 >gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] Length = 417 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 85/212 (40%), Gaps = 9/212 (4%) Query: 9 KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTGL + DR++E+ V L ++ + P GR P+ ++H I Sbjct: 6 FAVIDFETTGLFAGGHDRVVEVAVVHLDAQGTVEGRWETLVNP-GRDLGPQ--RIHQIRA 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P+F I + D + +AHNA FD+ F+ AEL+R + T+ Sbjct: 63 SDIVDAPAFEHIAGQLVDLL--EGRVLVAHNASFDLKFLVAELERTAAWMSTDFVSLCTM 120 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR P + L C I + H A D+ + + + + ++ Sbjct: 121 QLAREYLPGAGRALADCCAALDIQLDD--AHRASADAFATAQLLAAYIESEANDEI-WRE 177 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + D TV + +P ++ +T Sbjct: 178 HLDAALDHSWPTVSAENRAWLPRPPYSEVTAA 209 >gi|258622020|ref|ZP_05717049.1| ribonuclease T [Vibrio mimicus VM573] gi|258627109|ref|ZP_05721905.1| ribonuclease T [Vibrio mimicus VM603] gi|262171988|ref|ZP_06039666.1| ribonuclease T [Vibrio mimicus MB-451] gi|258580627|gb|EEW05580.1| ribonuclease T [Vibrio mimicus VM603] gi|258585773|gb|EEW10493.1| ribonuclease T [Vibrio mimicus VM573] gi|261893064|gb|EEY39050.1| ribonuclease T [Vibrio mimicus MB-451] Length = 224 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 8 LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 AL+ GI D F L+ + E + ++ A +AHNA FD Sbjct: 68 ANLEKAALEFTGIYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ A +R P P DT +++ + L CK G+ +R H AL Sbjct: 128 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQKTAELFCTIVNQWKALG 206 >gi|170727084|ref|YP_001761110.1| ribonuclease T [Shewanella woodyi ATCC 51908] gi|169812431|gb|ACA87015.1| ribonuclease T [Shewanella woodyi ATCC 51908] Length = 222 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 22/203 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA-VELLDYSKT---NRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI + +D ++T + P G PEAL Sbjct: 21 PVVIDVETAGFNAQTDALLEIAVTMLKMDDEGILSLDKTLHFHIEPFEGANLEPEALAFT 80 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQRI-- 113 GI + +K +F IF E +AHNA FD GF++ ++R Sbjct: 81 GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSQAIERCAL 140 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ L C GI + H AL D+ ++++ Sbjct: 141 KRTPFHPFATFDTAALSGLAL--GHTVLAKACAIAGIPFDNSEAHSALYDTERTAELFCL 198 Query: 174 MM-----VGGSQINFGFKTNEDR 191 ++ +GG I ++ E++ Sbjct: 199 IVNRWKALGGWPIAIDEESKEEQ 221 >gi|257482174|ref|ZP_05636215.1| exonuclease [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488861|ref|ZP_07006886.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156614|gb|EFH97709.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 204 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 4 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 62 NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 117 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +ARR P + L +L + + + H A+ D+ + +++ + Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 166 >gi|295096042|emb|CBK85132.1| RNAse T [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 219 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 22/206 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLVPDTTLHFHVEPFEGANLQP 72 Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109 EAL +GI L+ S + + A +AHNA FD F A Sbjct: 73 EALAFNGIDPTNPLRGAVSEYEALHAIFKMVRKGMKENDCSRAIMVAHNATFDHSFTMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L+ C GI H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACITAGIAFDGTQAHSALYDTERT 190 Query: 168 SDVYIKMM-----VGGSQINFGFKTN 188 ++++ +++ +GG + G + + Sbjct: 191 AELFCEIVNRWKRLGGWPLPMGDEAD 216 >gi|262165240|ref|ZP_06032977.1| ribonuclease T [Vibrio mimicus VM223] gi|262024956|gb|EEY43624.1| ribonuclease T [Vibrio mimicus VM223] Length = 224 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV + T + P G Sbjct: 8 LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGNLHPASTIHFHVEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 AL+ GI D F L+ + E + ++ A +AHNA FD Sbjct: 68 ANLEKAALEFTGIYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDH 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ A +R P P DT +++ + L CK G+ +R H AL Sbjct: 128 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQKTAELFCTIVNQWKALG 206 >gi|330829256|ref|YP_004392208.1| ribonuclease T [Aeromonas veronii B565] gi|328804392|gb|AEB49591.1| Ribonuclease T [Aeromonas veronii B565] Length = 225 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI A ++ + ++ F + P G Sbjct: 11 RFRGFYPVVIDVETAGFNAKTDALLEIAAYTLKMDEQGWLVPDQVFHFHVEPFEGANLEK 70 Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109 AL+ GI L+ S +E + + A +AHNA FD GF+ A Sbjct: 71 AALEFTGIDPYNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAA 130 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L C+ I ++ H AL D+ Sbjct: 131 AERAGLKRNPFHPFATFDTAALSGLAL--GQTVLAKACQSARIPFDNKEAHSALYDTERT 188 Query: 168 SDVYIKMMVGGSQIN 182 ++++ ++ + Sbjct: 189 TELFCHIVNRWKSMG 203 >gi|126437831|ref|YP_001073522.1| DNA polymerase III subunit epsilon [Mycobacterium sp. JLS] gi|126237631|gb|ABO01032.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS] Length = 330 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 9/164 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ET+G RI+ + A+ + D ++ L P P +HG+T E Sbjct: 17 WAVVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPG---VDPGPTHVHGLTAE 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I ++ + + +AHN FD F+ AE + + + L ++ T+ Sbjct: 74 MLEGAPRFGDIVADLAELL--RGRTLVAHNVGFDYSFLTAEAELVGAE-LPIDSVMCTVE 130 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +ARR + N L +L +G+ H AL D+ +L+ + Sbjct: 131 LARRLDLGTENLRLETLAAHWGVP--QLKPHDALDDAQVLAQIL 172 >gi|16272277|ref|NP_438489.1| ribonuclease T [Haemophilus influenzae Rd KW20] gi|260581209|ref|ZP_05849028.1| ribonuclease T [Haemophilus influenzae RdAW] gi|1173107|sp|P44639|RNT_HAEIN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|1573293|gb|AAC21987.1| ribonuclease T (rnt) [Haemophilus influenzae Rd KW20] gi|260092134|gb|EEW76078.1| ribonuclease T [Haemophilus influenzae RdAW] Length = 229 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R ++P P + DT S+A + L C+ I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMMVGGSQIN 182 + ++ M+ + Sbjct: 192 RTAKLFCYMVNHLKDLG 208 >gi|317047907|ref|YP_004115555.1| ribonuclease T [Pantoea sp. At-9b] gi|316949524|gb|ADU68999.1| ribonuclease T [Pantoea sp. At-9b] Length = 222 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 22/212 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI A ++ + + T + P G +P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAATTLKMDDDGWLHCDETLHFHVEPFEGAILNP 72 Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109 EAL GI L+ S + + A +AHNA FD F+ A Sbjct: 73 EALAFTGIDPSNPLRGAVSEYDALHAIFKMVRKGMKDSHCNRAIIVAHNATFDHNFLMAA 132 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R+ ++P P DT +++ + L CK G+ H AL D+ Sbjct: 133 AERVGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACKAAGMDFDSTQAHSALYDTEQT 190 Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFK 194 + ++ +++ +GG + + +E+ + Sbjct: 191 AILFCELVNRWKRLGGWPLAYSDDLSEEDAAE 222 >gi|307545330|ref|YP_003897809.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581] gi|307217354|emb|CBV42624.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581] Length = 682 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 10/167 (5%) Query: 4 KNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALK 61 + + + FD ETTGL + DR+I +GA +++ + TF+ + P R + Sbjct: 485 LHDLEIVAFDTETTGLALREGDRLISLGACRIVNGRLLADETFEQHVNPQ-RPIPSASTA 543 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG+ D+ +++ P+ + F D+ A +AHNA FD + A D D Sbjct: 544 IHGLGDQDVENAPTAEQVLPRFRDYVGS--AVLLAHNAAFD---MLAIRPGPGTDAFDM- 597 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLL 167 ++DTL ++R P +DL+SL KRYG+ ++H AL D+ + Sbjct: 598 PVLDTLLLSRALDPGLEGHDLDSLAKRYGLRFPPGTRHTALGDARVT 644 >gi|260769062|ref|ZP_05877996.1| ribonuclease T [Vibrio furnissii CIP 102972] gi|260617092|gb|EEX42277.1| ribonuclease T [Vibrio furnissii CIP 102972] gi|315180803|gb|ADT87717.1| ribonuclease T [Vibrio furnissii NCTC 11218] Length = 219 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 22/209 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G + + D ++EI AV L + T + P G Sbjct: 8 LTLKKRFRGYFPVVIDVETAGFNPQTDALLEICAVTLAMDENGDLHPASTIHFHVEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 AL+ +GI D F L+ S E + ++ A +AHNA FD Sbjct: 68 ANLEKAALEFNGIYDPFSPLRGAVSEEHALKEIYKQVRKEQKAADCSRAIIVAHNAAFDH 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 GF+ A +R P P DT +++ + + L CK G+ +R H AL Sbjct: 128 GFVMAASERCKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMAFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQINFGFKTNED 190 D+ ++++ ++ + G+ +D Sbjct: 186 YDTQQTAELFCGIVNQWKALG-GWPLADD 213 >gi|330504960|ref|YP_004381829.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01] gi|328919246|gb|AEB60077.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01] Length = 200 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 8/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG+ R EIG V +++ + +Q + +G P +L GI++ Sbjct: 4 IAVIDFETTGVSPTQARATEIG-VAIIEGGRIVDRYQSLMN-SGAWVPPFIEQLTGISNA 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P + +E DF E+ +AHNA FD F +AEL R+ + L P +L Sbjct: 62 MLRKAPPSDQVMNEVADFIGER--PLLAHNASFDQKFWDAELARVRRRRLQPFA--CSLL 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++RR P + L +L G+ + R H AL D+ + +++ + + Sbjct: 118 LSRRLLPEAPSHKLGNLNAWAGLPDTGR-AHRALADAEMAANLTLHL 163 >gi|153939167|ref|YP_001390679.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum F str. Langeland] gi|152935063|gb|ABS40561.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum F str. Langeland] Length = 855 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 95/175 (54%), Gaps = 8/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +VFD+E+TG++ D I++I +++ + + +FQ FL P +K+ ++ + Sbjct: 489 ELDNENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIP--KKSVGDSYLV 546 Query: 63 HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +D+FLK+ + + +F +F ++ + HN FD+ +N+EL+R++ + Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLEFI--KDTVIVGHNVTFDISILNSELERLSLEKASFK 604 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL IARR +PS + + L +L K + +S H A+ D DV + M+ Sbjct: 605 TYYDTLDIARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657 >gi|289649837|ref|ZP_06481180.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250] Length = 204 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 4 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 62 NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 117 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +ARR P + L +L + + + H A+ D+ + +++ + Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 166 >gi|88802793|ref|ZP_01118320.1| DNA polymerase III subunit [Polaribacter irgensii 23-P] gi|88781651|gb|EAR12829.1| DNA polymerase III subunit [Polaribacter irgensii 23-P] Length = 361 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI + +S ++ F + P ++ ++L GI ++ Sbjct: 2 YAILDIETTGGKFNEEGITEIAIYKFDGHSVVDQ-FISLVNPE-KEIQQFVVRLTGINNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I + ++ +AHN FD ++ E R+ D + T+ Sbjct: 60 MLRSAPKFYEIAKRIIEI--TKDCTLVAHNTTFDYRILSTEFDRLGYDF--NRNTLCTVE 115 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ++++ L L K GI ++ R H A D+ ++ ++ Sbjct: 116 LSKQLILDQPSYSLGKLTKALGIPMTDR--HRASGDALATVQLFKLLLE 162 >gi|291557306|emb|CBL34423.1| CRISPR-associated protein Cas2, E. coli subfamily [Eubacterium siraeum V10Sc8a] Length = 268 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 7/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIETTGL+ +D IIE+GAV + + S T+ V + +K ++L GIT+E Sbjct: 105 YTVIDIETTGLNP-DDEIIELGAVTVENGS-VAETYSVLVK-TDKKIPEAIIRLTGITEE 161 Query: 69 FLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L + S SEF + HN FD+ FI + D PS+IIDT+ Sbjct: 162 LLASEGTDKSKALSEFA--MRCNGKPLVGHNIGFDLNFIKSACAENKID-FVPSKIIDTV 218 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 I+R+ + L ++ + + + H AL D L +Y K+ Sbjct: 219 KISRKLLDINSYSLAAIADYFDLHYNKDRIHRALDDCLLTQRIYEKL 265 >gi|78066765|ref|YP_369534.1| DNA-directed DNA polymerase [Burkholderia sp. 383] gi|77967510|gb|ABB08890.1| DNA-directed DNA polymerase [Burkholderia sp. 383] Length = 205 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 9/167 (5%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL DR EI + L D +R FQ + GR+ + + L GIT+E Sbjct: 5 AVLDFETTGLSPNMGDRATEIAVILLRDGQVVDR-FQSLMN-AGRRIPSDVVALTGITNE 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P S++ E F + +AHNA FD F +EL + T+ Sbjct: 63 MIAAAPPASNVMKEAAAFVGKH--AVVAHNAGFDKRFWQSELGILGMSAEHAFA--CTML 118 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +ARR +P + L+SL + S R H A++D+ + ++ ++ Sbjct: 119 VARRIYPDAQSHRLSSLVDMLRLPKSGR-AHRAMVDAEMAGHLWCRL 164 >gi|320450504|ref|YP_004202600.1| putative DNA polymerase III subunit epsilon [Thermus scotoductus SA-01] gi|320150673|gb|ADW22051.1| putative DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01] Length = 247 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 14/173 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + +IE+G V L + R+FQ + P+ R SP +L GI Sbjct: 74 VVLDLETTGLSPGLNEVIEVGLVRLEQGER--RSFQSLVRPS-RPPSPFIERLTGIRAWE 130 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L++ PS + + + + A + NA FD+GF+ L+ + +P ++DTL + Sbjct: 131 LEEAPSLEEVLEKAYPLL--RGATLVIQNASFDLGFLRPALEGMGYSLENP--VVDTLRL 186 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL----SDVYIKMMVG 177 A+R P R L++L + + + R H AL D +VY + G Sbjct: 187 AKRAMPGLRRYGLDALSQV--LELPPREAHRALGDVERTLAVAYEVYYMLTSG 237 >gi|269102191|ref|ZP_06154888.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761] gi|268162089|gb|EEZ40585.1| ribonuclease T [Photobacterium damselae subsp. damselae CIP 102761] Length = 221 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 22/207 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 K++ R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 11 KSRFRGYFPVVIDVETAGFNAQTDALLEICAVTLKMDDDGWLHPATTLHFHVTPFEGAIL 70 Query: 56 SPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFI 106 EAL+ +GI D F L+ S + E + ++ A +AHNA FD F+ Sbjct: 71 HKEALEFNGIRDPFSPLRGAVSEDTALKEIFKQIRKEQKNADCSRAIMVAHNANFDHSFV 130 Query: 107 NAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A +R + ++P P DT +++ + L C+ I ++ H AL D+ Sbjct: 131 MAAAERAKLKRNPFHPFATFDTAALSGLAL--GQTVLAKACQTANIPFDNKEAHSALYDT 188 Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDR 191 ++++ K++ + G+ +D Sbjct: 189 ERTAELFCKIVNKWKALG-GWPLVDDE 214 >gi|251793080|ref|YP_003007806.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700] gi|247534473|gb|ACS97719.1| ribonuclease T [Aggregatibacter aphrophilus NJ8700] Length = 217 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53 + K++ R ++ D+ET GL++K + ++E+ A+ + + ++ + P G Sbjct: 12 LLKHRFRGYLPVIIDVETAGLNAKTNALLELAAITVKMDDNGHLVPDQKCHFHIQPFEGA 71 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGF 105 PE++K +GI D L+ S + SE + Q + +AHNA FD GF Sbjct: 72 NIDPESIKFNGIDIDNPLRGAISENIAISEMFKMVRRAQKDAECQRSIIVAHNAAFDQGF 131 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 I A QR N ++P P DT +++ + L C+ I H AL D Sbjct: 132 IMAAAQRTNAKRNPFHPFSTFDTATLSGFMF--GQTVLIKACQAAKIPFDGSQAHSALYD 189 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ M+ + Sbjct: 190 TERTAELFCYMVNHLKTLG 208 >gi|68248930|ref|YP_248042.1| ribonuclease T [Haemophilus influenzae 86-028NP] gi|81336659|sp|Q4QNL5|RNT_HAEI8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|68057129|gb|AAX87382.1| ribonuclease T [Haemophilus influenzae 86-028NP] Length = 229 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R ++P P + DT S+A + L C+ I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMMVGGSQIN 182 + ++ M+ + Sbjct: 192 RTAKLFCYMVNHLKDLG 208 >gi|256827805|ref|YP_003151764.1| exonuclease, DNA polymerase III, epsilon subunit family [Cryptobacterium curtum DSM 15641] gi|256583948|gb|ACU95082.1| exonuclease, DNA polymerase III, epsilon subunit family [Cryptobacterium curtum DSM 15641] Length = 1043 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 11/178 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG+ D + +I A +++ + F F+ P GR E L I + Sbjct: 37 IVVIDTETTGISFVRDELTQIAAARMVEGKIVD-WFVTFVNP-GRPIPEEISHLTSIYES 94 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D PS + DF E + +AHNA FD F + L + ID+L Sbjct: 95 DVADAPSPEEAVFQLVDFVGE--SCLVAHNAAFDKHFCTKPAT---GESLTHNIWIDSLD 149 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 +AR P + + L L + + +S H A D L V+ ++ ++ G Sbjct: 150 LARIALPRLKSHRLLDLVRAFDAPLS---THRADADVEALCAVFRILLAAVDAMSQGL 204 >gi|188533941|ref|YP_001907738.1| ribonuclease T [Erwinia tasmaniensis Et1/99] gi|188028983|emb|CAO96849.1| Ribonuclease T [Erwinia tasmaniensis Et1/99] Length = 218 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 22/208 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G D+K + ++EI AV + + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFDAKTNALLEIAAVTLKMDNDGWLVKDETLHFHVEPFPGSILLP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + S +IF + +AHNA FD+ F+NA Sbjct: 73 EALAFNGIDPANPLRGAVSEYESLHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L C G+T H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLVL--GQTVLAKACHAAGMTFDSSQAHSALYDTLQT 190 Query: 168 SDVYIKMM-----VGGSQINFGFKTNED 190 +D++ +++ +GG + K++ D Sbjct: 191 ADLFCELVNRWKRLGGWPLPLAAKSDAD 218 >gi|330870427|gb|EGH05136.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 203 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +ARR P + L +L + + + H A+ D+ + +++ + Sbjct: 117 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 165 >gi|330895532|gb|EGH27842.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. japonica str. M301072PT] Length = 203 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 3 RIAVIDFETTGISPGHSCRATEIAVVIMAQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 61 NNMIRTAPSAERVMGDVADFVGS--TPLVAHNASFDQKFWDYELSRIERT--REQSFACS 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 L +ARR P + L +L + + H A+ D+ + +++ + Q + Sbjct: 117 LLLARRLMPGAPNHKLGTLTRYARLP-DTGKAHRAMADAEMAANLTAYLTNELRQTH 172 >gi|310641367|ref|YP_003946125.1| DNA polymerase iii, epsilon subunit [Paenibacillus polymyxa SC2] gi|309246317|gb|ADO55884.1| DNA polymerase III, epsilon subunit [Paenibacillus polymyxa SC2] Length = 245 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 10/178 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEA 59 +++ +VFD+ETTG ++ D I+ GA+ ++ + F + P + + Sbjct: 53 TPLDRLETVVFDLETTGFSAQHGDEILSFGAIRVVGDVIMEKEQFYTLVNPRT-EIPEQI 111 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L GIT E P + +F F + +AH + D F+NA L + +K L Sbjct: 112 TRLTGITREMTDGAPPLMNGLHDFMSFVGGR--VLVAHASAHDKAFLNAALWKTSKVQL- 168 Query: 120 PSRIIDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R++DT+ +A+ P L+ L I I R H AL D+ + + +++ + Sbjct: 169 THRVLDTMMLAKWLEPQQHQTYSLDELLAYQSIPIEGR--HHALEDAKMTAKLWVAYV 224 >gi|289627588|ref|ZP_06460542.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 204 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V + R FQ + G + L GI+ Sbjct: 4 RIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 62 NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 117 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +ARR P + L +L + + + H A+ D+ + +++ + Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 166 >gi|268592614|ref|ZP_06126835.1| ribonuclease T [Providencia rettgeri DSM 1131] gi|291311752|gb|EFE52205.1| ribonuclease T [Providencia rettgeri DSM 1131] Length = 214 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 20/196 (10%) Query: 5 NKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNS 56 N+ R +V D+ET G ++K D ++EI A+ L + T + P G Sbjct: 12 NRFRGYYPVVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSMDETLHFHVEPFEGANLE 71 Query: 57 PEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINA 108 P AL GI L+ S + + A +AHNA FD F+ Sbjct: 72 PSALAFTGIDPTNPLRGAVSEYEALHAIFKVIRKGMKNTDCNRAIIVAHNANFDHSFVMN 131 Query: 109 ELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 +R ++P P DT +++ + L C GI + HGAL D++ Sbjct: 132 AAERAGLKRNPFHPFATFDTAALSGLVF--GQTILAKACVSAGIPFDGKQAHGALYDTNR 189 Query: 167 LSDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 190 TALLFCEIVNKWKKLG 205 >gi|262402653|ref|ZP_06079214.1| ribonuclease T [Vibrio sp. RC586] gi|262351435|gb|EEZ00568.1| ribonuclease T [Vibrio sp. RC586] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 18/190 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI AV L + T + P G AL+ Sbjct: 19 PVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFT 78 Query: 64 GITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRIN 114 GI D F L+ + E + ++ A +AHNA FD F+ A +R Sbjct: 79 GIYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCK 138 Query: 115 KD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 139 LKRVPFHPFATFDTAALSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFC 196 Query: 173 KMMVGGSQIN 182 ++ + Sbjct: 197 TIVNRWKALG 206 >gi|261211954|ref|ZP_05926240.1| ribonuclease T [Vibrio sp. RC341] gi|260838562|gb|EEX65213.1| ribonuclease T [Vibrio sp. RC341] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 18/190 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI AV L + T + P G AL+ Sbjct: 19 PVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFT 78 Query: 64 GITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRIN 114 GI D F L+ + E + ++ A +AHNA FD F+ A +R Sbjct: 79 GIYDPFSPLRGAVTEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCK 138 Query: 115 KD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 P P DT +++ + L CK G+ +R H AL D+ ++++ Sbjct: 139 LKRVPFHPFATFDTAALSGLAF--GQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFC 196 Query: 173 KMMVGGSQIN 182 ++ + Sbjct: 197 TIVNRWKALG 206 >gi|109897723|ref|YP_660978.1| ribonuclease T [Pseudoalteromonas atlantica T6c] gi|109700004|gb|ABG39924.1| RNAse T [Pseudoalteromonas atlantica T6c] Length = 211 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 21/207 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53 + K++ R ++ D+ET G +++ D ++E+ A+ + + ++TF + P G Sbjct: 7 LLKDRFRGYFPVIVDVETAGFNAQTDALLEVAAITTQMDADGFLTPDKTFHYHVVPFEGA 66 Query: 54 KNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 AL+ +GI L+ + + + + Q + +AHNA FD+GF Sbjct: 67 NLEKAALEFNGIDPWCALRGALDETEVMKDLCKQIRKEQKDADCQRSVMVAHNAAFDLGF 126 Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 INA ++R I + P P DT +++ + L C+ I+ H AL D Sbjct: 127 INAAIERSKIKRTPFHPFVSFDTTTLSGLAL--GQTVLVKACQAANISFDQSEAHSALYD 184 Query: 164 SHLLSDVYIKMMVGGSQINFGFKTNED 190 + +++Y ++ Q G+ T E Sbjct: 185 TQKTAELYCYIVNK-WQSACGWPTPEH 210 >gi|145628675|ref|ZP_01784475.1| ribonuclease T [Haemophilus influenzae 22.1-21] gi|145638764|ref|ZP_01794373.1| ribonuclease T [Haemophilus influenzae PittII] gi|144979145|gb|EDJ88831.1| ribonuclease T [Haemophilus influenzae 22.1-21] gi|145272359|gb|EDK12267.1| ribonuclease T [Haemophilus influenzae PittII] gi|309750254|gb|ADO80238.1| Ribonuclease T [Haemophilus influenzae R2866] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRRQKDADCQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R ++P P + DT S+A + L C+ I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMMVGGSQIN 182 + ++ M+ + Sbjct: 192 RTAKLFCYMVNHLKDLG 208 >gi|34498206|ref|NP_902421.1| exonuclease [Chromobacterium violaceum ATCC 12472] gi|34104060|gb|AAQ60420.1| probable exonuclease [Chromobacterium violaceum ATCC 12472] Length = 207 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 12/186 (6%) Query: 6 KMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R V D ET G D R EIG V +++ + F + G P +L G Sbjct: 2 RQRVAVIDFETNGATPGGDCRATEIG-VAMVEDGRVVDRFHSLMN-AGVWVPPMIERLTG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I++ LKD P + + F +A AHNA FD F + EL + Sbjct: 60 ISNAMLKDAPPAERVMRDAAHFVG--DAPLAAHNAGFDRKFWDYELGLLGLS--RRQDFA 115 Query: 125 DTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 TL ++RR P + + L +L + G+ + R H A+ D+ + + + M++ G ++ Sbjct: 116 CTLLLSRRLLPQAPDHKLGTLARWAGLPDTGR-AHRAMADAEMAAQL---MLLLGDTLSR 171 Query: 184 GFKTNE 189 F + Sbjct: 172 QFHLAD 177 >gi|152993730|ref|YP_001359451.1| DNA polymerase III subunit epsilon [Sulfurovum sp. NBC37-1] gi|151425591|dbj|BAF73094.1| DNA polymerase III, epsilon subunit [Sulfurovum sp. NBC37-1] Length = 272 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 9/165 (5%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R V DIET G ++IEIGAV + +R + F+ K+ G Sbjct: 70 QEQRYCVIDIETNGSKPGTSQVIEIGAVMVEKGEIVDR-LETFV--ECAFLPEYITKITG 126 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I LKD P+ + ++ F +A ++AHNA FD F+ A +R + + + Sbjct: 127 IEPIDLKDAPTRRAALTQLRQFMG--DAVFVAHNANFDYSFLTASFERFGLGGIG-NPKL 183 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 T+ +A+R S R L L GI + + H A D+ L ++ Sbjct: 184 CTIDLAKRTFESERYGLAYLIDFLGIETA--THHRAYSDA-LCAE 225 >gi|50120858|ref|YP_050025.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043] gi|81827142|sp|Q6D5W0|RNT_ERWCT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|49611384|emb|CAG74831.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043] Length = 223 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 22/213 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++E+ AV + + + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 AL +GI + + + IF ++ +AHNA FD F+ A Sbjct: 73 AALAFNGIDPTNPLRGAVSEYDALHEIFKVVRKGIKDRGCNRAIIVAHNATFDHSFMAAA 132 Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L C GI H AL D++ Sbjct: 133 AERCSLKRNPFHPFATFDTAALSGLVL--GQTVLAKACITAGIAFDSSQAHSALYDTNQT 190 Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKE 195 + ++ +++ +GG + + ED ++ Sbjct: 191 ALLFCELVNRWKRLGGWPLALEESSLEDTSAED 223 >gi|268609211|ref|ZP_06142938.1| exonuclease [Ruminococcus flavefaciens FD-1] Length = 179 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 85/180 (47%), Gaps = 9/180 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R IVFD+ET + N+ + IG + +++ + +F + P ++L GI Sbjct: 3 RYIVFDVETP--NFANNHMSAIG-ITVVEDGRIADSFFSLVDPETH-FDHFNIRLTGIDP 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++ P+F+ ++ + N +AHNA FD+ + L + ++ + T+ Sbjct: 59 KKVQGAPNFAQLWQKIEPIMNSG--ILVAHNAVFDMSVLKKCLSAYGIEWKSTAKYLCTV 116 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 R+ P + LN +C YGI++ H H A DS +++ ++ + G+ +N +T Sbjct: 117 QAGRKLLPGRGHKLNEMCDYYGISLDH---HQADSDSRACAEILLRYIESGADVNKFIRT 173 >gi|110833585|ref|YP_692444.1| ribonuclease T [Alcanivorax borkumensis SK2] gi|110646696|emb|CAL16172.1| Ribonuclease T [Alcanivorax borkumensis SK2] Length = 228 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 17/196 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNS 56 +R +V D+ET G +S+ D ++EI AV + + + Q + P G Sbjct: 16 LRFRGFLPVVIDVETGGFNSQTDALLEIAAVLIEMDAQGNLRPSTRIQFHVDPFPGANLE 75 Query: 57 PEALKLHGIT-DEFLKDKPSFSS----IFSEFWDFFNEQ---NAEWIAHNAKFDVGFINA 108 AL GI + L+ + +F + A + HN+ FD GF+NA Sbjct: 76 QAALDFTGIDPNNPLRGAVPEETALKGVFDPVRKAIKQHACSRAVLVGHNSFFDQGFLNA 135 Query: 109 ELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 R I ++P P DT ++A + + L C+ GI S R H AL D+ Sbjct: 136 ATDRTDIKRNPFHPFSSFDTATLAGLVY--GQTVLAKACEAAGIRFSQREAHSALYDATR 193 Query: 167 LSDVYIKMMVGGSQIN 182 ++++ M+ + Sbjct: 194 TAELFCSMVNRFKTLG 209 >gi|117920981|ref|YP_870173.1| ribonuclease T [Shewanella sp. ANA-3] gi|166200021|sp|A0KY98|RNT_SHESA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|117613313|gb|ABK48767.1| RNAse T [Shewanella sp. ANA-3] Length = 222 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKN 55 K++ R +V D+ET G +S+ D ++EI +++ D ++T + P G Sbjct: 11 KHRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFNIEPFEGANL 70 Query: 56 SPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFIN 107 PEAL +GI L+ S F E + + +AHNA FD GF++ Sbjct: 71 EPEALAFNGIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVS 130 Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 ++R + P P DT ++A L C GI ++ H AL D+ Sbjct: 131 KAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACIMAGIPFDNKEAHSALYDTE 188 Query: 166 LLSDVYIKMMVGGSQIN 182 ++++ ++ Q+ Sbjct: 189 RTAELFCHIVNRWKQLG 205 >gi|253989411|ref|YP_003040767.1| ribonuclease T [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780861|emb|CAQ84023.1| ribonuclease T [Photorhabdus asymbiotica] Length = 217 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 22/200 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++K D ++EI A+ L + + + + P G P AL+ Sbjct: 19 PVVIDVETGGFNAKTDALLEIAAITLKMDDEGWITPDESLHFHIEPFEGANLEPAALEFT 78 Query: 64 GITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQR--I 113 GI L+ S + A +AHNA FD GF+ A +R + Sbjct: 79 GIDPSNPLRGAVSEYEALHAIFKMVRKGIKNSHCNRAIIVAHNANFDHGFVMAAAERARL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++ + L C G++ + H AL D++ ++++ + Sbjct: 139 KRNPFHPFATFDTAALGGLVL--GQTILAKACITAGVSFDNNQAHSALYDTNRTAELFCE 196 Query: 174 MM-----VGGSQINFGFKTN 188 M+ +GG + + N Sbjct: 197 MVNRWKRLGGWPLAAAVEEN 216 >gi|320096178|ref|ZP_08027770.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338] gi|319976891|gb|EFW08642.1| DNA polymerase III PolC [Actinomyces sp. oral taxon 178 str. F0338] Length = 210 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 11/181 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTGL + I EIGA+ + ++ F+ + P+ P K+ GIT + Sbjct: 19 WLVVDVETTGL-GRACEITEIGALRMR-GTQVVDEFEELVRPS-APIPPFIEKMTGITTD 75 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNA--EWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +++ F + +AHNA FD+GF+ A R P +DT Sbjct: 76 MVAGADPVQAVYPRFAAWAGAGAPGRVLVAHNADFDMGFL-ARAARACSMPWRTPPSVDT 134 Query: 127 LSIARRKHPSS---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 LS+AR P + L ++ + + + H AL D+ +V + ++ F Sbjct: 135 LSLARLALPRPVVANHRLGTVARHFRTATAPG--HRALGDARATGEVLCGLAGLAAEAGF 192 Query: 184 G 184 G Sbjct: 193 G 193 >gi|146308744|ref|YP_001189209.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] gi|145576945|gb|ABP86477.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp] Length = 199 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 8/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG+ R EIG + D +R +Q + +G P +L GI++ Sbjct: 4 IAVIDFETTGVSPSQARATEIGVAIIEDGRIVDR-YQSLMN-SGAWVPPFIEQLTGISNA 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P + +E DF E+ +AHNA FD F +AEL R+ + P +L Sbjct: 62 MLRKAPPSEQVMNEVADFIGER--PLLAHNASFDQKFWDAELARVRRRRSQPFA--CSLL 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++RR P + L +L G+ + R H AL D+ + +++ + + Sbjct: 118 LSRRLLPEAPSHKLGNLNAWAGLPDTGR-AHRALADAEMAANLTLHL 163 >gi|253688762|ref|YP_003017952.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755340|gb|ACT13416.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 223 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 22/213 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++E+ AV + + + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 AL +GI + + + IF EQN +AHNA FD F+ A Sbjct: 73 AALAFNGIDPTNPLRGAVSEYDALHEIFKVVRKGIKEQNCNRAIIVAHNATFDHSFMMAA 132 Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L C GI H AL D++ Sbjct: 133 AERCSLKRNPFHPFATFDTAALSGLVL--GQTVLAKACITAGIAFDSSQAHSALYDTNQT 190 Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKE 195 + ++ +++ +GG I + ED ++ Sbjct: 191 ALLFCELVNRWKRLGGWPIALEENSLEDVSAED 223 >gi|225017584|ref|ZP_03706776.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum DSM 5476] gi|224949644|gb|EEG30853.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum DSM 5476] Length = 865 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 14/212 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E+TG D+ +D II+I AV + + + R+F+ L P+ K ++ +H +D Sbjct: 500 VVFDVESTGTDTSSDEIIQIAAVRIDETGRVLRSFEQLLHPS--KPVGQSEAVHHFSDAL 557 Query: 70 LKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L ++ + +EF F + A + HN FD+ + +EL R+ P + DTL Sbjct: 558 LAERGGEPPQVLAEFCSFV--RGAVVVGHNVGFDLTILASELSRLGLPPAEYEEYYDTLD 615 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR +P + L +L K + +S H A+ D DV + + + T Sbjct: 616 LARRFYPDLPNHKLETLSKLLDTEV--KSSHDAMDDILATKDVLLHLTA-----HKLLPT 668 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + R ++ L R ++E Sbjct: 669 LQQR-KAVYERYQGRFDKLSSTIESLRRASEE 699 >gi|172040912|ref|YP_001800626.1| putative exonuclease [Corynebacterium urealyticum DSM 7109] gi|171852216|emb|CAQ05192.1| putative exonuclease [Corynebacterium urealyticum DSM 7109] Length = 270 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 16/177 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+ETTGL+ DR+IEI AV +++ +F L P E+ ++G+ D Sbjct: 90 RCAVVDLETTGLEPATDRVIEI-AVLTVEHGSIVGSFHCLLNPEC-SIPGESSNINGLRD 147 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP------- 120 + + + P+F+ + E + + HN KFDVGF+ AE R+ Sbjct: 148 DDVANSPTFAEVAQELLPHVLNR--TLVGHNVKFDVGFLAAEYARLGHADAARVLTEQCL 205 Query: 121 SRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + T + AR P R L +L G+ S H A D+ D+ ++ Sbjct: 206 PQALCTAATARELIPREAVGRYTLANLAAHCGLASS--PAHRAQQDAATTFDLTHRL 260 >gi|301155716|emb|CBW15184.1| ribonuclease T (RNase T) [Haemophilus parainfluenzae T3T1] Length = 229 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L + ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGNLQPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDAECQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R ++P P + DT ++A + L C+ I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTATLAGFMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMMVGGSQIN 182 ++++ M+ + Sbjct: 192 RTAELFCYMVNHLKDLG 208 >gi|187780046|ref|ZP_02996519.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC 15579] gi|187773671|gb|EDU37473.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC 15579] Length = 855 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 8/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +VFD+E+TG+++ D I++I +++ + + F+ FL P +K ++ + Sbjct: 489 ELDNENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIEKFERFLTP--KKYVGDSYLV 546 Query: 63 HGITDEFLKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +D+FLK+K + +F +F ++ I HN FD+ +N+ELQR+ + + Sbjct: 547 HGFSDQFLKEKGEDKERVLKDFLEFV--KDTVVIGHNITFDITILNSELQRLGLEKANFK 604 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL IARR +PS + + L +L K + +S H A+ D DV + M+ Sbjct: 605 TYYDTLDIARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMVML 657 >gi|229525619|ref|ZP_04415024.1| ribonuclease T [Vibrio cholerae bv. albensis VL426] gi|229339200|gb|EEO04217.1| ribonuclease T [Vibrio cholerae bv. albensis VL426] Length = 224 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 8 LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTVHFHVEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 AL+ GI D F L+ S E + ++ A +AHNA FD Sbjct: 68 ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDH 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ A +R P P DT +++ + L CK G+ +R H AL Sbjct: 128 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 185 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 186 YDTQKTAELFCTIVNQWKALG 206 >gi|148379300|ref|YP_001253841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. ATCC 3502] gi|153931399|ref|YP_001383675.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|153936519|ref|YP_001387223.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. Hall] gi|148288784|emb|CAL82868.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152927443|gb|ABS32943.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|152932433|gb|ABS37932.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. Hall] Length = 855 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 94/168 (55%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+E+TG+++ D I++I +++ + + +FQ FL P +K ++ +HG +D+F Sbjct: 496 VVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTP--KKFVGDSYLVHGFSDQF 553 Query: 70 LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 LK+ + + +F +F ++ + HN FD+ +N+EL+R++ + DTL Sbjct: 554 LKENGENKKVVLKDFLEFI--KDTVIVGHNVAFDISILNSELERLSLEKASFKTYYDTLD 611 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IARR +P+ + + L +L K + +S H A+ D DV + M+ Sbjct: 612 IARRFYPNLTNHKLETLSKLFN--TETKSSHDAMDDILATKDVLMAML 657 >gi|82751054|ref|YP_416795.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122] gi|123549199|sp|Q2YY51|DING_STAAB RecName: Full=Probable ATP-dependent helicase dinG homolog gi|82656585|emb|CAI81008.1| probable ATP-dependent DNA helicase [Staphylococcus aureus RF122] Length = 897 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + + + T+ + + P L I + Sbjct: 6 YAVVDLETTGNQLDFDDIIQIGITFVRNIQIID-TYHSMIR-TNLEIPPFIQALTSIEEN 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F+ + +D N ++ ++AHN FD+ FI + N P R+IDTL Sbjct: 64 MLQQAPYFNQVAQGIYD--NMKDCIFVAHNVDFDLNFIKKAFKDCNIQY-RPKRVIDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 I + P L+ L + +GIT+++ H A D+ + + I Sbjct: 121 IFKIAFPTDKSYQLSELAEAHGITLAN--AHRADEDAATTAKLMI 163 >gi|323464450|gb|ADX76603.1| DnaQ family exonuclease/DinG family helicase, putative [Staphylococcus pseudintermedius ED99] Length = 900 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG + D II+IG + + + + + L I +E Sbjct: 7 YAVVDLETTGNQADYDEIIQIGITFVRNNQIID-HYHSMIK-TDLTIPTFIQALTSIEEE 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F + + + ++ ++AHN FD+ F+ ++ + P ++IDTL Sbjct: 65 MLNQAPYFKEVAHKIYSKI--KDCIFVAHNVNFDLNFLKRSFKKCHIHY-QPKKVIDTLE 121 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + P+ + L L + GI ++ H A D++ + + I Sbjct: 122 LFKIAFPTEKSYQLTELAESLGIPLT--QAHRADEDAYTTARIMI 164 >gi|71894029|ref|YP_278137.1| DNA polymerase III PolC [Mycoplasma synoviae 53] gi|71850817|gb|AAZ43426.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53] Length = 1451 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 7/176 (3%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFDIETT L + + IIE A +++ +F+ + K S +L IT+ Sbjct: 410 RYVVFDIETTSLSAYHGEIIEFAA-TIIENKAVVDKVDIFIK-SKEKLSHFTTRLTSITN 467 Query: 68 EFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L K + +D N A +AHNA FD F+ + + N ID+ Sbjct: 468 EMLDQKGIELKEALQKIYDVLNNNVA--VAHNANFDYNFLIEKFDQNNMQA-PKCTFIDS 524 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 L ++R +++LN C+ + H AL D+ +L+D +I+ + I Sbjct: 525 LVVSRILFEHRDKHNLNEFCRNLSVNYDTEKAHRALYDTEVLADAWIEATLKLKDI 580 >gi|259503450|ref|ZP_05746352.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041] gi|259168528|gb|EEW53023.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041] Length = 929 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 12 FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG DRII++G V + D NR F+ + P R ++L GI + + Sbjct: 2 VDLETTGTSVNHGDRIIQVGCVLVQDGQVINR-FETKINPRER-IPRAVVQLTGIQERDV 59 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P F + + ++AHN FD F+NAEL+R PL + IDT++++ Sbjct: 60 RKAPLFEDVAGTIYSLL--TGTIFVAHNVNFDFPFLNAELERAGYPPLSI-KAIDTVTLS 116 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + P++++ L L I H H A+ D+ + + + ++ Sbjct: 117 QILLPTAKSFRLRDLTSSLQIE--HDHPHSAVSDAEATTGLLVDLL 160 >gi|152979466|ref|YP_001345095.1| ribonuclease T [Actinobacillus succinogenes 130Z] gi|150841189|gb|ABR75160.1| ribonuclease T [Actinobacillus succinogenes 130Z] Length = 226 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 22/201 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGR 53 + KN+ R +V D+ET GL+ + D ++E+ AV L ++T+ + P G Sbjct: 19 LLKNRFRGYYPVVIDVETAGLNCQTDGLLELAAVTLKMNDRGDLLPDQTYHCHIRPFEGA 78 Query: 54 KNSPEALKLHGITDE-FLKDK--PSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDV 103 +PE++K++GI E +++ S S + + Q + +AHNA FD Sbjct: 79 GINPESMKINGIDLESPIRNAIAVSESEAITGLFQMVRRGQKNAGCQRSIIVAHNAAFDH 138 Query: 104 GFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 GF+ A +R I ++P P DT +++ + L C+ I H AL Sbjct: 139 GFVMAAAERTKIKRNPFHPFGSFDTATLSGLMF--GQTVLIKACQSASIPFDSNQAHSAL 196 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ M+ + Sbjct: 197 YDTERTAELFCYMVNHLKALG 217 >gi|148825392|ref|YP_001290145.1| ribonuclease T [Haemophilus influenzae PittEE] gi|229846411|ref|ZP_04466519.1| ribonuclease T [Haemophilus influenzae 7P49H1] gi|166228565|sp|A5UAG1|RNT_HAEIE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|148715552|gb|ABQ97762.1| ribonuclease T [Haemophilus influenzae PittEE] gi|229810504|gb|EEP46222.1| ribonuclease T [Haemophilus influenzae 7P49H1] Length = 229 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R ++P P + DT S+A + L C I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMMVGGSQIN 182 ++++ M+ + Sbjct: 192 RTAELFCYMVNHLKDLG 208 >gi|71281998|ref|YP_270147.1| ribonuclease T [Colwellia psychrerythraea 34H] gi|71147738|gb|AAZ28211.1| ribonuclease T [Colwellia psychrerythraea 34H] Length = 231 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 18/190 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA-VELLDYSK----TNRTFQVFLCP-NGRKNSPEALKL 62 +V D+ET G +S+ D ++E+ A V LD + T Q + P G P+AL+ Sbjct: 33 PVVIDVETAGFNSQTDALLELAASVLHLDEDTGDFSIDETIQFNIEPFEGANLEPKALEF 92 Query: 63 HGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN 114 GI L+ + + Q A +AHNA FD+GF+NA +R Sbjct: 93 TGIDPTNPLRGAVDEDEALKDLFKLVRKKMKVAGCQRAIIVAHNAAFDLGFLNAATERCK 152 Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + P DT ++A + L C I ++ H AL D+ ++++ Sbjct: 153 IKRSPFHSFVSFDTTTLAGLAL--GQTVLAKACIAAKIDFNNSEAHSALYDTEKTAELFC 210 Query: 173 KMMVGGSQIN 182 ++ + Sbjct: 211 HIVNKWRALG 220 >gi|157737104|ref|YP_001489787.1| DNA polymerase III subunit epsilon [Arcobacter butzleri RM4018] gi|157698958|gb|ABV67118.1| DNA polymerase III [Arcobacter butzleri RM4018] Length = 272 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 9/172 (5%) Query: 5 NKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 ++ DIET G K +IIE+GAV+ + + +F + ++ P ++ Sbjct: 79 SEQTFCFVDIETNGGTPKKGFQIIELGAVKYKNG-EVLDSFNSLV--FAKEIPPYIQEVT 135 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 IT L+ P + +F +F + +IAH+ KFD FI+ ++ + L +R Sbjct: 136 KITPAMLETAPRIEKVLKDFKEFLGDD--VFIAHDIKFDYNFISDSFEKYSLGKLL-NRK 192 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + T+ +A+R S + L+SL + I I + H A D+ V+ K + Sbjct: 193 LCTIDLAKRTIKSEKYGLSSLKELLNIDIENH--HRAYYDALTTQIVFEKCL 242 >gi|298244072|ref|ZP_06967878.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] gi|297551553|gb|EFH85418.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] Length = 1009 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 15/210 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K+ +R I D+ETTGL ++ D I+E+ A++ S+ TF+ F+ P GR Sbjct: 1 MAKKSAIR-IALDLETTGLHAEQDAILEVAAIKFQ-GSEVLDTFETFISP-GRSIPYRVQ 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GI E L P F +I + F + + H+ FDVGF+ Sbjct: 58 RLTGIKPELLVGAPPFDAISRQLHTFLG--DYPIVGHSIPFDVGFLRRW------GLAHS 109 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + ++DT +A PS S +L + GI + +H A++D+ L V++ + Sbjct: 110 NPMVDTFELATVLLPSLSSYNLGQVAHSLGIQVPS-DRHRAMVDTVLAMQVFLSLYERLQ 168 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 ++ +D + ++ P + + + Sbjct: 169 TVDLAL--LQDLARLDAPRSWPLLHFFRHE 196 >gi|72161431|ref|YP_289088.1| hypothetical protein Tfu_1027 [Thermobifida fusca YX] gi|71915163|gb|AAZ55065.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX] Length = 590 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 12/177 (6%) Query: 18 GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77 G +IE+GAV L D + F + P+ L GIT ++ PS + Sbjct: 57 GTHPATAALIEVGAVRLRDGQVLDE-FTTLVNPH-APVPASITLLTGITTAMVESAPSPA 114 Query: 78 SIFSEFWDFFNEQ-NAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS 136 + S F DF + +AHNA FDV F+ A R P ++DTL +ARR P Sbjct: 115 AALSAFLDFAGFRPGTVLVAHNAPFDVRFLKAACARHGI-PWPSPAVLDTLQLARRLVPR 173 Query: 137 S---RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 + L++L + +G +H H AL D+ +DV ++ G G T E+ Sbjct: 174 GEVRNHRLDTLARVFG---AHPPAHRALDDARATADVLRGLV--GRLRARGVDTWEE 225 >gi|331701432|ref|YP_004398391.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus buchneri NRRL B-30929] gi|329128775|gb|AEB73328.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus buchneri NRRL B-30929] Length = 945 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 9/174 (5%) Query: 5 NKMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 +K V DIETTG D D R I+ + + +TF + P R+ ++L Sbjct: 3 SKTTFAVVDIETTGTDISADNRTIQFSCCLVSNNKII-KTFVTDINPQ-REVPNRIVQLT 60 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT+E L+ +F + ++ + N N ++AHN FD F+N+E QR+ L Sbjct: 61 GITNERLQKAKTFDQVAAQLYSLLN--NTVFVAHNVNFDFPFLNSEFQRVGYPELQI-EA 117 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 IDT+++++ P+ S L L + I H H A D+ + + + ++ Sbjct: 118 IDTVTLSQILLPTLSSYRLQDLSSYFNIE--HDHPHTADSDALATAKLLLILLR 169 >gi|319892447|ref|YP_004149322.1| DinG family ATP-dependent helicase YoaA [Staphylococcus pseudintermedius HKU10-03] gi|317162143|gb|ADV05686.1| DinG family ATP-dependent helicase YoaA [Staphylococcus pseudintermedius HKU10-03] Length = 900 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 8/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG + D II+IG + + + + + L I +E Sbjct: 7 YAVVDLETTGNQADYDEIIQIGITFVRNNQIID-HYHSMIK-TDLTIPTFIQALTSIEEE 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F + + + ++ ++AHN FD+ F+ ++ + P ++IDTL Sbjct: 65 MLNQAPYFKEVAHKIYSKI--KDCIFVAHNVNFDLNFLKRSFKKCHIHY-QPKKVIDTLE 121 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + P+ + L L + GI ++ H A D++ + + I Sbjct: 122 LFKIAFPTEKSYQLTELAESLGIPLT--QAHRADEDAYTTARIMI 164 >gi|148653458|ref|YP_001280551.1| ribonuclease T [Psychrobacter sp. PRwf-1] gi|148572542|gb|ABQ94601.1| RNAse T [Psychrobacter sp. PRwf-1] Length = 274 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 20/205 (9%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R K +V D+ET G ++ D ++EI + ++ + L P G Sbjct: 56 RFRKFLPVVVDVETAGFNAATDALLEIACIPIVMDDEGKFVPGEPLSAHLNPFEGANLEQ 115 Query: 58 EALKLHGIT--DEFLK-----DKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107 AL GI + K ++P+ IF E + + + HNA FD+ F+N Sbjct: 116 RALDFTGIDPNNPMRKAIAEEEQPALRRIFKELKAVRKDNDCLKCILVGHNAHFDLSFLN 175 Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A ++R N +P ++DT++++ + L C+ GI H AL D+ Sbjct: 176 AAIERTNSKNHNPFHQFSVLDTVTLSALAF--GQTVLARACRAAGIEFDGSEAHSALYDT 233 Query: 165 HLLSDVYIKMMVGGSQINFGFKTNE 189 ++++ K++ S + + Sbjct: 234 QKTAELFCKILNHYSMMPISLPEDN 258 >gi|326803711|ref|YP_004321529.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae ACS-120-V-Col10a] gi|326651377|gb|AEA01560.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae ACS-120-V-Col10a] Length = 890 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 9/180 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + V D+ETTG + DRII+IG V L K F+ + P L GI Sbjct: 4 KYAVVDLETTGTKYNRGDRIIQIGVVFLEGQKKIGE-FKSNIQP-LIPVPKNISDLTGIQ 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E L+D P F I + F Q+ ++AHN FD F++A + + LD IDT Sbjct: 62 TEDLRDAPLFEDIAPDL--FQQLQDCVFVAHNINFDYKFLSASFEGVGLPALDL-EGIDT 118 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + + R +P + L +GI + H A+ D+ + + +++M + + Sbjct: 119 VELIRVLYPQAASYKLGDFSLDHGINLV--KAHTAIEDARATAQLLVQVMDKVASLPESL 176 >gi|91792755|ref|YP_562406.1| ribonuclease T [Shewanella denitrificans OS217] gi|123356922|sp|Q12PE3|RNT_SHEDO RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|91714757|gb|ABE54683.1| RNAse T [Shewanella denitrificans OS217] Length = 226 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++ D ++EI +++ D ++T + P G PEAL + Sbjct: 19 PVVIDVETAGFNANTDALLEIAVTLLKMNDDGILVLDKTVHFHIEPFEGANLEPEALAFN 78 Query: 64 GITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQR--I 113 GI L+ S F E + + +AHNA FD+ F+N ++R + Sbjct: 79 GIDPTNPLRGAVSEKEAFLEIFKTVKKGQKASDCHRSIIVAHNAAFDLSFVNKAIERNDL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++A L CK GI ++ H AL D+ ++++ Sbjct: 139 KRSPFHPFASFDTATLAGLSI--GHTVLAKACKMAGIDFDNKEAHSALYDTERTAELFCH 196 Query: 174 MMVGGSQIN 182 ++ + Sbjct: 197 IVNRWKALG 205 >gi|323462903|pdb|3NGY|A Chain A, Crystal Structure Of Rnase T (E92g Mutant) gi|323462904|pdb|3NGY|B Chain B, Crystal Structure Of Rnase T (E92g Mutant) gi|323462905|pdb|3NGY|C Chain C, Crystal Structure Of Rnase T (E92g Mutant) gi|323462906|pdb|3NGY|D Chain D, Crystal Structure Of Rnase T (E92g Mutant) gi|323462908|pdb|3NGZ|A Chain A, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Gc) With One Mg In The Active Site gi|323462909|pdb|3NGZ|B Chain B, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Gc) With One Mg In The Active Site Length = 235 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 33 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 92 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + IF +AHNA FD F+ A Sbjct: 93 EALAFNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 152 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 153 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 210 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 211 AVLFCEIVNRWKRLG 225 >gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC 27678] gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC 27678] Length = 328 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 13/213 (6%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N V D ETTGL+ + DR IEIG V + + + + R A +H Sbjct: 13 NSKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIRVH-RDI--GAQWIH 69 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSR 122 I+ L P F I E D + ++AHN FD F+ +E +R+ D P++ Sbjct: 70 HISAVELIHAPEFEGIARELRDLLAGR--VFVAHNVAFDSKFLLSEYRRLGTDIPVNSHT 127 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++ T+ ++R L C+ +GI H AL D+H + + ++M + + Sbjct: 128 MLCTMKLSRSLIGVG--SLADCCREFGIDNED--AHSALSDAHATALLLGRLMDADPEWS 183 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 G++ D +E + P ++ +R + L R Sbjct: 184 -GWRRRLD-AAEEAGEHWPELTSFERREWLPRR 214 >gi|239636871|ref|ZP_04677870.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus warneri L37603] gi|239597545|gb|EEQ80043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus warneri L37603] Length = 902 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 8/176 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG D II+IG + T+ + P L I + Sbjct: 6 YAVVDLETTGNQLDYDDIIQIGITFVRQNKIIG-TYHSMIR-TDLDIPPFIQALTSIEET 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I + + E ++AHN FD+ FI + N P R++DTL Sbjct: 64 MLEKAPYFKEIAHDIYQQLQE--CVFVAHNVAFDLNFIKKAFKNCNIKY-RPKRVLDTLE 120 Query: 129 IARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + P L+ L + + I +++ H A D+ + + IK Q+ Sbjct: 121 LFKIAFPTDKSYQLSELAEAHDIPLNN--AHRADEDATTTAQLMIKAFEKFEQLPL 174 >gi|323340217|ref|ZP_08080481.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ruminis ATCC 25644] gi|323092408|gb|EFZ35016.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ruminis ATCC 25644] Length = 180 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 13/192 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + FD ET ++K + + + + + + + P + +HGI Sbjct: 1 MNFVAFDFETA--NAKRNSACSLALTVVQNNQIVDELYS-LINPKT-NFDYRNIAIHGIK 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P FS ++ FF + + +AHNA FD + L++ + +IDT Sbjct: 57 PQMVADSPDFSELWPHIESFFTPE-SLVVAHNAPFDCSVLTRTLEKYGIAAPHFN-VIDT 114 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + +++ + N L++LC+ I ++H H AL DS + + + + NFG Sbjct: 115 VKTSKQFYDFQDNKLDTLCQNLDIDLAHH--HNALDDSQACAKILLSQLQ-----NFGSD 167 Query: 187 TNEDRFFKEEKK 198 T + +K +K Sbjct: 168 TLKSFIYKYPRK 179 >gi|71734762|ref|YP_276473.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555315|gb|AAZ34526.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A] Length = 204 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V +++ + FQ + G + L GI+ Sbjct: 4 RIAVIDFETTGISPGHSCRATEIAVV-IMEQGRIVELFQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 62 NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRKL--EQSFACS 117 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +ARR P + L +L + + + H A+ D+ + +++ + Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 166 >gi|332343370|gb|AEE56704.1| ribonuclease T [Escherichia coli UMNK88] Length = 215 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 20/196 (10%) Query: 5 NKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNS 56 N+ R +V D+ET G ++K D ++EI A+ L + + T + P G Sbjct: 12 NRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQ 71 Query: 57 PEALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINA 108 PEAL +GI + + + IF +AHNA FD F+ A Sbjct: 72 PEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMA 131 Query: 109 ELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 132 AAERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTER 189 Query: 167 LSDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 190 TAVLFCEIVNRWKRLG 205 >gi|320322651|gb|EFW78744.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076] gi|320330564|gb|EFW86543.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4] Length = 204 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V +++ + FQ + G + L GI+ Sbjct: 4 RIAVIDFETTGISPGHSCRATEIAVV-IMEQGRIVELFQSLMN-AGVRIPAFIEGLTGIS 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ PS + + DF +AHNA FD F + EL RI + + Sbjct: 62 NNMIRTAPSAERVMGDVADFVGA--TPLVAHNASFDQKFWDYELSRIQRK--REQSFACS 117 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +ARR P + L +L + + + H A+ D+ + +++ + Sbjct: 118 MLLARRLMPGAPNHKLGTLTSYARLPNTGK-AHRAMADAEMAANLTAYLT 166 >gi|323462912|pdb|3NH0|A Chain A, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Aac) gi|323462913|pdb|3NH0|B Chain B, Crystal Structure Of Rnase T In Complex With A Non-Preferred Ssdna (Aac) gi|323462916|pdb|3NH1|A Chain A, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462917|pdb|3NH1|B Chain B, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462918|pdb|3NH1|C Chain C, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462919|pdb|3NH1|D Chain D, Crystal Structure Of Rnase T In Complex With A Preferred Ssdna (Tagg) With Two Mg In The Active Site gi|323462924|pdb|3NH2|A Chain A, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang gi|323462925|pdb|3NH2|B Chain B, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang gi|323462928|pdb|3NH2|E Chain E, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang gi|323462929|pdb|3NH2|F Chain F, Crystal Structure Of Rnase T In Complex With A Stem Dna With A 3' Overhang Length = 235 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 33 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 92 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF +AHNA FD F+ A Sbjct: 93 EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 152 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 153 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 210 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 211 AVLFCEIVNRWKRLG 225 >gi|296102681|ref|YP_003612827.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057140|gb|ADF61878.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 216 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 22/202 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEEGWLTPDTTLHFHVEPFEGANLQP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF E N +AHNA FD F A Sbjct: 73 EALAFNGIDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCSRAIMVAHNATFDHSFTMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L+ C GI H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACITAGIEFDGTQAHSALYDTERT 190 Query: 168 SDVYIKMM-----VGGSQINFG 184 ++++ +++ +GG + G Sbjct: 191 AELFCEIVNRWKRLGGWPLAMG 212 >gi|261339587|ref|ZP_05967445.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316] gi|288318408|gb|EFC57346.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316] Length = 216 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 22/202 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHVEPFEGANLQP 72 Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109 EAL +GI L+ S + + A +AHNA FD F A Sbjct: 73 EALAFNGIDPKNPLRGAVSEYDALHAIFKMVRKGMKDNDCSRAIMVAHNATFDHSFTMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L+ C GI H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACITAGIEFDGTQAHSALYDTERT 190 Query: 168 SDVYIKMM-----VGGSQINFG 184 ++++ +++ +GG + G Sbjct: 191 AELFCEIVNRWKRLGGWPLPMG 212 >gi|77461145|ref|YP_350652.1| exonuclease [Pseudomonas fluorescens Pf0-1] gi|77385148|gb|ABA76661.1| putative exonuclease [Pseudomonas fluorescens Pf0-1] Length = 203 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 9/169 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V L + R +Q + G + +L GI+ Sbjct: 3 RIAVIDFETTGISPSSSCRATEIAVVMLENGRIVER-YQSLMN-AGVRIPAFIEQLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L+ PS + +E +F +AHNA FD F + EL RI + L + Sbjct: 61 NAMLRTAPSAEKVMNEVNEFVGC--TPLLAHNAAFDQKFWDFELGRIKRTRLQNFA--CS 116 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L +ARR P + + L +L + H A+ D+ + +++ + + Sbjct: 117 LLLARRLMPAAPNHKLGTLTTFAQLP-HTGQAHRAMADAEMAANLMVHL 164 >gi|269836971|ref|YP_003319199.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM 20745] gi|269786234|gb|ACZ38377.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM 20745] Length = 658 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 8/152 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V DIETTGL RIIE+ A+ + F + P R KL GI + Sbjct: 88 FVVIDIETTGLRPLRQRIIEVAAIRYRGGRRQG-VFSTLVNPE-RPVPAYIRKLTGIDET 145 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F + E F + I +N +FD+ F+NAEL+R+ + PL R +D L Sbjct: 146 ALAGAPVFRRVADELTAFLGDD--LLIGYNVEFDIAFLNAELKRLGRPPLINPR-LDLLP 202 Query: 129 IARRKHPSSRND-LNSLCKRYGITISHRSKHG 159 ++ + P R L++ C G+ R +H Sbjct: 203 LSTQLIPGMRRSGLDAACLALGLEF--RERHR 232 >gi|315638420|ref|ZP_07893597.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis JV21] gi|315481411|gb|EFU72038.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis JV21] Length = 260 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 54/194 (27%), Positives = 97/194 (50%), Gaps = 16/194 (8%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 R NK++ + DIE+TG + +I+EIGAV++ ++ + +R F+ F+ + + Sbjct: 62 TRTNKIKEQVFCIVDIESTGG-INSGQILEIGAVKIQNHKELDR-FESFVKVD--EIPLN 117 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 +L GI +KD P+ + + F F N ++ ++AHN KFD FI+ L L Sbjct: 118 ITELTGIELNMVKDAPNLTRVLEAFRLFLN--DSVFVAHNVKFDYNFISKSLYECGFGIL 175 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +R I T+ A+ SS L++L + I +H H AL D+ ++++ + Sbjct: 176 L-NRKICTIDFAQCCIESSHYKLDALKEILKIESTH---HRALNDALAAAEIFKYCL--- 228 Query: 179 SQINFGFKTNEDRF 192 S++ KT E+ Sbjct: 229 SKLPPHIKTTEELI 242 >gi|295106393|emb|CBL03936.1| exonuclease, DNA polymerase III, epsilon subunit family [Gordonibacter pamelaeae 7-10-1-b] Length = 1031 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 11/170 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTG +D + +I A + + F F+ P G+ + L I DE Sbjct: 47 IVVVDTETTGFSFNHDELTQIAAARMEQGRIVD-WFITFVNP-GKPIPEDVAYLTDIHDE 104 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P S SE +F +A+ +AHNA+FD F + PL + ID+L Sbjct: 105 DVADAPLPSEALSELAEFVG--DAKIVAHNAEFDRTFTTRH---PSGYPLLENTWIDSLD 159 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 +AR P + + L L K +G +S H A D ++ ++ Sbjct: 160 LARIALPRLKSHRLLDLVKAFGAPLS---THRADADVEATCSIFRILLAA 206 >gi|261750330|ref|ZP_05994039.1| DNA polymerase III [Brucella suis bv. 5 str. 513] gi|261740083|gb|EEY28009.1| DNA polymerase III [Brucella suis bv. 5 str. 513] Length = 233 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + + +SP+A Sbjct: 18 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 76 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + T+ ARR L+ + G+ + +HGAL D++L + +Y+ + Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 188 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + K P + + R + Sbjct: 189 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRGSAA 226 >gi|117620471|ref|YP_857153.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561878|gb|ABK38826.1| ribonuclease T [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 240 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +++ D ++EI A ++ + ++ F + P G Sbjct: 32 RFRGFYPVVIDVETAGFNARTDALLEIAAYTLKMDEQGWLVPDQIFHFHVEPFEGANLEK 91 Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109 AL+ GI L+ S +E + + A +AHNA FD GF+ A Sbjct: 92 AALEFTGIDPFNPLRGAVSEKEALTEIFKGIRKGMKEQDCGRAIIVAHNATFDHGFVMAA 151 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L C+ I ++ H AL D+ Sbjct: 152 AERAGLKRNPFHPFATFDTAALSGLAL--GQTVLAKACQSARIPFDNKEAHSALYDTERT 209 Query: 168 SDVYIKMMVGGSQIN 182 ++++ ++ + Sbjct: 210 TELFCHIVNRWKSLG 224 >gi|319788791|ref|YP_004090106.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] gi|315450658|gb|ADU24220.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] Length = 177 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 9/180 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R IVFD+ET + N+R+ IG + + + T F ++ P +L GI Sbjct: 3 RYIVFDVETP--NRYNNRMSAIGIAVIENGAVTEEYFS-YVDPQTY-FDRFNTQLTGINK 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P+F ++ + AHNA FD+G + L+ + + + T+ Sbjct: 59 YTVSGAPTFPELWERIEPIMSSG--VLAAHNAVFDLGVLKKCLKAYGIEWKNTVKYCCTV 116 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + RR P + LN LC+ YGI + H H A DS +D+ ++ G+Q +T Sbjct: 117 QMGRRVLPGISHKLNVLCEHYGIALDH---HKADSDSRACADILLRYFESGAQEREHIRT 173 >gi|260582581|ref|ZP_05850371.1| ribonuclease T [Haemophilus influenzae NT127] gi|319775811|ref|YP_004138299.1| ribonuclease T [Haemophilus influenzae F3047] gi|329123653|ref|ZP_08252213.1| ribonuclease T [Haemophilus aegyptius ATCC 11116] gi|260094392|gb|EEW78290.1| ribonuclease T [Haemophilus influenzae NT127] gi|317450402|emb|CBY86618.1| ribonuclease T [Haemophilus influenzae F3047] gi|327469852|gb|EGF15317.1| ribonuclease T [Haemophilus aegyptius ATCC 11116] Length = 229 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R ++P P + DT S+A + L C+ I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMMVGGSQIN 182 + ++ M+ + Sbjct: 192 RTAKLFCYMVNHLKDLG 208 >gi|315636786|ref|ZP_07892012.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22] gi|315478912|gb|EFU69619.1| DNA polymerase III epsilon subunit [Arcobacter butzleri JV22] Length = 272 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 9/171 (5%) Query: 6 KMRKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + DIET G K +IIE+GAV+ + + +F + ++ P ++ Sbjct: 80 EQTFCFVDIETNGGTPKKGFQIIELGAVKYKNG-EVLDSFNSLV--FAKEIPPYIQEVTK 136 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT L+ P + +F +F + +IAH+ KFD FI+ ++ + L +R + Sbjct: 137 ITPAMLETAPRIEKVLKDFKEFLGDD--VFIAHDIKFDYNFISDSFEKYSLGKLL-NRKL 193 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+R S + L+SL + I I + H A D+ V+ K + Sbjct: 194 CTIDLAKRTIKSEKYGLSSLKELLNIDIENH--HRAYYDALTTQIVFEKCL 242 >gi|304397653|ref|ZP_07379530.1| ribonuclease T [Pantoea sp. aB] gi|304354825|gb|EFM19195.1| ribonuclease T [Pantoea sp. aB] Length = 222 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 86/212 (40%), Gaps = 22/212 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSP 57 R +V D+ET G +++ D ++EI A+ + + + ++T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL GI + + + +IF + +AHNA FD+ F++A Sbjct: 73 EALAFTGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAAGMEFDSTQAHSALYDTQQT 190 Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFK 194 + ++ +++ +GG + F E Sbjct: 191 ATLFCELVNRWKRLGGWPLPFAEGDAEASASA 222 >gi|313500723|gb|ADR62089.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1] Length = 203 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 10/194 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R E+ V +L+ + +Q + G L GIT Sbjct: 3 RIAVIDFETTGISPGTGCRATEVAVV-MLEGGRIVERYQSLMN-AGVPVPAFVAGLTGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ P + +E +F +AHNA FD F + EL RI + P + Sbjct: 61 TAMLRSAPPVEKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELSRIGRSRSQPFA--CS 116 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L ++RR P + + L +L + G+ + H A+ D+ + +++ + G + + G Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLP-DTGTAHRAMADAEMAANLLQHL-AGVLRQDHGV 174 Query: 186 KTNEDRFFKEEKKT 199 + +KT Sbjct: 175 QQLSHELLCRLQKT 188 >gi|148977600|ref|ZP_01814176.1| ribonuclease T [Vibrionales bacterium SWAT-3] gi|145963115|gb|EDK28383.1| ribonuclease T [Vibrionales bacterium SWAT-3] Length = 211 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 21/194 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI A+ L + T + P G Sbjct: 8 LTLKKRFRGYFPVVIDVETAGFNAETDALLEICAITLKMDENGDLQPASTLHFHIEPFEG 67 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 AL +GI D F L+ S E + ++ A +AHNA FD+ Sbjct: 68 ANIEQAALDFNGIKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDL 127 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+NA +R P P DT +++ + + L C+ G+ ++ H AL Sbjct: 128 NFVNAASERCKLKRVPFHPFATFDTAALSGLAY--GQTVLAKACRTAGMEFDNKEAHSAL 185 Query: 162 LDSHLLSDVYIKMM 175 D+ ++++ ++ Sbjct: 186 YDTQKTTELFCGIV 199 >gi|261323134|ref|ZP_05962331.1| DNA polymerase III [Brucella neotomae 5K33] gi|261299114|gb|EEY02611.1| DNA polymerase III [Brucella neotomae 5K33] Length = 233 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 9/218 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + + +SP+A Sbjct: 18 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 76 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 T+ ARR L+ + G+ + +HGAL D++L + +Y+ + Sbjct: 134 PFYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 188 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + K P + + R + Sbjct: 189 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 226 >gi|21684660|gb|AAL87524.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps] Length = 201 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 5/157 (3%) Query: 19 LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78 L + R+ E+G VE+ T F ++ P ++ + A +HG+ DEFL +P+F + Sbjct: 1 LSPRYHRLAEVGCVEIAGGRITGNYFHSYINP-CQRMTRGAQAVHGLKDEFLATQPTFGA 59 Query: 79 IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL--DPSRIIDTLSIARRKHPS 136 I F A + HN FD+ F++A L P + +IDT+ ++ Sbjct: 60 IAQRLLYFL--CGAVLVGHNLTFDLNFLDAGLVSAGFMPAARYCAGVIDTMRHLAQRGSR 117 Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R L+ LC R G+ R++HGAL D+ LL++ ++ Sbjct: 118 RRFSLDDLCDRLGVRRGERARHGALEDAVLLAEAFVA 154 >gi|218708963|ref|YP_002416584.1| ribonuclease T [Vibrio splendidus LGP32] gi|218321982|emb|CAV17988.1| Ribonuclease T (RNase T) [Vibrio splendidus LGP32] Length = 241 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI A+ L + T + P G Sbjct: 35 LTLKKRFRGYFPVVIDVETAGFNAETDALLEICAITLRMDENGDLHPASTLHFHIEPFEG 94 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 AL +GI D F L+ S E + ++ A +AHNA FD+ Sbjct: 95 ANIEQAALDFNGIKDPFSPLRGAVSEQEALKEIYKLVRKEQKASDCSRAIMVAHNATFDL 154 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+NA +R P P DT +++ + + L C+ G+ ++ H AL Sbjct: 155 NFVNAASERCKLKRVPFHPFATFDTAALSGLAY--GQTVLAKACRTAGMEFDNKEAHSAL 212 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 213 YDTQKTTELFCGIVNKWKALG 233 >gi|308180572|ref|YP_003924700.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046063|gb|ADN98606.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 934 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 9/174 (5%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 K V DIETTG K DRII+IG + + N TF + P Sbjct: 1 MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKIIN-TFATDVNP-LTTVPAVIEN 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GI++ ++ P F + + Q ++AHN FD+ FIN+ELQR+ L P Sbjct: 59 LTGISNARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPEL-PI 115 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +DT+S+++ P+ S L L I H H A D+ + ++I + Sbjct: 116 QAVDTVSLSQILLPTASSFRLRDLSHLLAID--HNHPHSADSDAIATAHLFITL 167 >gi|319896653|ref|YP_004134846.1| ribonuclease t [Haemophilus influenzae F3031] gi|317432155|emb|CBY80506.1| ribonuclease T [Haemophilus influenzae F3031] Length = 229 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R ++P P + DT S++ + L C I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLSGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMMVGGSQIN 182 ++++ M+ + Sbjct: 192 RTAELFCYMVNHLKDLG 208 >gi|145299434|ref|YP_001142275.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449] gi|142852206|gb|ABO90527.1| ribonuclease T [Aeromonas salmonicida subsp. salmonicida A449] Length = 223 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +++ D ++EI A ++ + ++ F + P G Sbjct: 11 RFRGFYPVVIDVETAGFNARTDALLEIAAYTLKMDEDGWLAPDQVFHFHVEPFEGANLEK 70 Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAE 109 AL+ GI L+ S +E + + A +AHNA FD GF+ A Sbjct: 71 AALEFTGIDPFNPLRGAVSEKEALTEIFKGIRKGMKESDCNRAIIVAHNATFDHGFVMAA 130 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L C+ I ++ H AL D+ Sbjct: 131 AERAGLKRNPFHPFATFDTAALSGLAL--GQTVLAKACQSARIPFDNKEAHSALYDTERT 188 Query: 168 SDVYIKMMVGGSQIN 182 ++++ ++ + Sbjct: 189 TELFCHIVNRWKSLG 203 >gi|148549845|ref|YP_001269947.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1] gi|148513903|gb|ABQ80763.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1] Length = 211 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 10/194 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R E+ V +L+ + +Q + G L GIT Sbjct: 3 RIAVIDFETTGISPGTGCRATEVAVV-MLEGGRIVERYQSLMN-AGVPVPAFVAGLTGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ P + +E +F +AHNA FD F + EL RI + P + Sbjct: 61 TAMLRSAPPVDKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELSRIGRSRSQPFA--CS 116 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L ++RR P + + L +L + G+ + H A+ D+ + +++ + G + + G Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLP-DTGTAHRAMADAEMAANLLQHL-AGVLRQDHGV 174 Query: 186 KTNEDRFFKEEKKT 199 + +KT Sbjct: 175 QQLSHELLCRLQKT 188 >gi|237794676|ref|YP_002862228.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum Ba4 str. 657] gi|229260614|gb|ACQ51647.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum Ba4 str. 657] Length = 855 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 95/176 (53%), Gaps = 8/176 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +VFD+E+TG+++ D I++I +++ + + +FQ FL P +K+ ++ + Sbjct: 489 ELDNENVVVFDVESTGINTTEDEIVQIAGIKINNKGEAIESFQRFLNP--KKSVGDSYLV 546 Query: 63 HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +D+FLK+ + + +F F ++ + HN FD+ +N+EL+R++ + Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLKFI--KDTVIVGHNVTFDISILNSELERLSLEKASFK 604 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 DTL IARR +PS + + L +L K + +S H A+ D D+ + M+ Sbjct: 605 TYYDTLDIARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDILMVMLR 658 >gi|170768829|ref|ZP_02903282.1| ribonuclease T [Escherichia albertii TW07627] gi|170122377|gb|EDS91308.1| ribonuclease T [Escherichia albertii TW07627] Length = 215 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF +AHNA FD F+ A Sbjct: 73 EALAFNGIDPNDPERGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMEFDSNQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|24374295|ref|NP_718338.1| ribonuclease T [Shewanella oneidensis MR-1] gi|54036332|sp|Q8EDJ2|RNT_SHEON RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|24348836|gb|AAN55782.1|AE015715_1 ribonuclease T [Shewanella oneidensis MR-1] Length = 222 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKN 55 K++ R +V D+ET G +S+ D ++EI +++ D ++T + P G Sbjct: 11 KHRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFHIEPFEGANL 70 Query: 56 SPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107 PEAL +GI + +K +F IF + +AHNA FD GF++ Sbjct: 71 EPEALAFNGIDPTNPLRGAVSEKDAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVS 130 Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 ++R + P P DT ++A L C GI ++ H AL D+ Sbjct: 131 KAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACIMAGIPFDNKEAHSALYDTE 188 Query: 166 LLSDVYIKMMVGGSQIN 182 ++++ ++ + Sbjct: 189 RTAELFCYIVNRWKTLG 205 >gi|308186683|ref|YP_003930814.1| ribonuclease T [Pantoea vagans C9-1] gi|308057193|gb|ADO09365.1| ribonuclease T [Pantoea vagans C9-1] Length = 222 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 85/202 (42%), Gaps = 22/202 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSP 57 R +V D+ET G +++ D ++EI A+ + + + ++T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL GI + + + +IF + +AHNA FD+ F++A Sbjct: 73 EALAFTGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAAGMEFDSTQAHSALYDTQQT 190 Query: 168 SDVYIKMM-----VGGSQINFG 184 + ++ +++ +GG + F Sbjct: 191 ATLFCELVNRWKRLGGWPLPFA 212 >gi|227111797|ref|ZP_03825453.1| ribonuclease T [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 223 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 83/207 (40%), Gaps = 22/207 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++E+ AV + + + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 AL +GI + + + IF +Q +AHNA FD F+ A Sbjct: 73 AALAFNGIDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAA 132 Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L C GI H AL D++ Sbjct: 133 AERCSLKRNPFHPFATFDTAALSGLVL--GQTVLAKACITAGIAFDSSQAHSALYDTNQT 190 Query: 168 SDVYIKMM-----VGGSQINFGFKTNE 189 + ++ +++ +GG I + E Sbjct: 191 ALLFCELVNRWKRLGGWPIALEENSLE 217 >gi|322494373|emb|CBZ29674.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania mexicana MHOM/GT/2001/U1103] Length = 347 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 85/228 (37%), Gaps = 63/228 (27%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL---------------------------------D 36 +V D+ETTG + D I+E+ EL Sbjct: 108 VVVDLETTGFSATADEILEVACAELRWTPSSHTSSTGPKHTAPCAPSLGEQSVCGVIEGL 167 Query: 37 YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA--- 92 +++ R F ++ P + R+ S A +HGIT E ++ + + SE + A Sbjct: 168 WTRGGRVFHRYVRPSDPRRISAAATAVHGITWETVQHCSPWPVVASELVAYMVLVGADGP 227 Query: 93 ---------------------EWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTLSI 129 +AHNA FD F+ L+R + T Sbjct: 228 FSASAQLEAAQAGGHRAVQLPPLVAHNASFDARFLEHHLRRCGYQIFWQPQYPLTCTRQW 287 Query: 130 ARRKHPSSRNDLNSLCKRYGIT-ISHRSK--HGALLDSHLLSDVYIKM 174 A+ +P N+L++LC GI + R+ H AL D+ L + ++++M Sbjct: 288 AQVAYPHLANNLDALCAFLGIDGAADRAANGHDALTDATLTALLFLQM 335 >gi|265989936|ref|ZP_06102493.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1] gi|263000605|gb|EEZ13295.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1] Length = 233 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + + +SP+A Sbjct: 18 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 76 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + T+ ARR L+ + G+ + +HGAL D++L + +Y+ + Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQDV 188 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + K P + + R + Sbjct: 189 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 226 >gi|254556626|ref|YP_003063043.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1] gi|254045553|gb|ACT62346.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1] Length = 934 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 9/174 (5%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 K V DIETTG K DRII+IG + + N TF + P Sbjct: 1 MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKIIN-TFATDVNP-LTTVPAVIEN 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GI++ ++ P F + + Q ++AHN FD+ FIN+ELQR+ L P Sbjct: 59 LTGISNARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPEL-PI 115 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +DT+S+++ P+ S L L I H H A D+ + ++I + Sbjct: 116 QAVDTVSLSQILLPTASSFRLRDLSHLLAID--HNHPHSADSDAIATAHLFITL 167 >gi|311033291|ref|ZP_07711381.1| Exonuclease [Bacillus sp. m3-13] Length = 216 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 9/191 (4%) Query: 5 NKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKL 62 +K+ VFD ETTG + +++DR+IE+GAV++ + + + +Q ++ PN R+ E ++L Sbjct: 25 DKLEFTVFDTETTGFNVARDDRLIELGAVKIKNLQVIDNSAYQTYINPN-RQIPREIIEL 83 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 IT E + P ++ + N+ + ++ H FD+ I AEL+R N +P + Sbjct: 84 TSITQEQTDEAPQALEAITKLTNMANQTSVCYVGHYLAFDMQAIQAELKRNNLKWKNP-K 142 Query: 123 IIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +DTL + PS DL + +G I R H AL D+ + ++ +++ Sbjct: 143 SLDTLDLIGYIAPSYDMRDLEKYARDFGTRIYQR--HSALGDALTTAYLFTELL--QLSQ 198 Query: 182 NFGFKTNEDRF 192 + G KT D Sbjct: 199 DRGLKTWGDLL 209 >gi|291531228|emb|CBK96813.1| exonuclease, DNA polymerase III, epsilon subunit family [Eubacterium siraeum 70/3] Length = 458 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 17/190 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRK--NSPEALKLHGI 65 +V+D+ETTGL+S+ +I+IGAV+++D ++TF+ + P K S K+ GI Sbjct: 271 FVVYDLETTGLNSEFHAVIQIGAVKVVDGVVDESQTFEELVNPKYSKVSVSDNITKITGI 330 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TDE K+ + EF F + +NA FD F+ + N + ++ D Sbjct: 331 TDEEAKNARQVWEVIPEFVKFIGDDTLAGF-NNAAFDSKFLERAGRHSNI--IITNKQFD 387 Query: 126 TLSIARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + A+R ++LN+ + +GI H AL D+ + VYIK+ Q Sbjct: 388 IMKYAKRIKKKCNLEINGDELNNYAEYFGIKNE--KAHTALSDAITTAKVYIKL----RQ 441 Query: 181 INFGFKTNED 190 ++ G ++E+ Sbjct: 442 LDEGKSSSEN 451 >gi|153829541|ref|ZP_01982208.1| ribonuclease T [Vibrio cholerae 623-39] gi|148875001|gb|EDL73136.1| ribonuclease T [Vibrio cholerae 623-39] Length = 243 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NG 52 + K + R +V D+ET G +++ D ++EI AV L + T + P G Sbjct: 27 LTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEG 86 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 AL+ GI D F L+ S E + ++ A +AHNA FD Sbjct: 87 ANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYRLVRKEQKAADCSRAIIVAHNAHFDH 146 Query: 104 GFINAELQRINKD--PLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ A +R P P DT +++ + L CK G+ +R H AL Sbjct: 147 SFVMAASERCKLKRVPFHPFATFDTATLSGLAF--GQTVLAKACKTAGMEFDNREAHSAL 204 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 205 YDTQKTAELFCTIVNQWKALG 225 >gi|15602853|ref|NP_245925.1| ribonuclease T [Pasteurella multocida subsp. multocida str. Pm70] gi|13431828|sp|P57896|RNT_PASMU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|12721315|gb|AAK03072.1| Rnt [Pasteurella multocida subsp. multocida str. Pm70] Length = 220 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 87/192 (45%), Gaps = 20/192 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCPN-GR 53 + K++ R ++ D+ET G ++K D ++E+ A+ + ++T + P G Sbjct: 13 LLKHRFRGYFPVIIDVETAGFNAKTDALLELAAITVKMNEDGLLVPDQTCHFHIEPFAGA 72 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 +PE+L+ +GI L+ S + +E + + Q + +AHNA FD F Sbjct: 73 NINPESLQFNGIDIHNPLRGAVSETVAITELFKMVRKAQKAADCQRSIIVAHNAAFDQSF 132 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A +R ++P P + DT +++ + L C+ I + H AL D Sbjct: 133 LMAAAERTGVKRNPFHPFGMFDTATLSGFMF--GQTVLVKACQAAQIAFDGKQAHSALYD 190 Query: 164 SHLLSDVYIKMM 175 + ++++ M+ Sbjct: 191 TERTAELFCYMV 202 >gi|8134659|sp|O54364|RNT_PASHA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|2731432|gb|AAB93471.1| RNAse T [Mannheimia haemolytica] Length = 216 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 22/208 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGR 53 + K++ R +V D+ET GL+++ D ++E+ A+ L + ++ + P G Sbjct: 12 LLKHRFRGYLPVVIDVETAGLNAQTDALLELAAITLKMDEQGYLVPDQQCHFHIAPFEGA 71 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFS----EFWDFFNEQNA---EWIAHNAKFDVGF 105 +PE+LK +GI D L+ + + EQ +AHNA D GF Sbjct: 72 NINPESLKFNGIDIDNPLRGAVAENIAIPGMFIMVRKAMKEQGCQRGVIVAHNAASDPGF 131 Query: 106 IN-AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 A ++RIN +DP P + DT ++A + + L C+ I + H AL Sbjct: 132 FYRAAIKRINAKRDPFHPFAMFDTATLAGFMY--GQTVLVKACQVAKIPFDGKQAHSALY 189 Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNED 190 D+ ++++ M+ + GF D Sbjct: 190 DTERTAELFCAMVNRLKDLG-GFPPLSD 216 >gi|319440229|ref|ZP_07989385.1| putative exonuclease [Corynebacterium variabile DSM 44702] Length = 186 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 9/176 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R++ +V D ETTGLD +DRIIE+ A+ + + F + P GR Sbjct: 14 LRRSLRDCVVVDCETTGLDPDSDRIIEVAALRVREGRPVA-LFHRVVDP-GRPLPGFITS 71 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD+ ++ P I + F + HN FD+ FI+AE+ + P S Sbjct: 72 LTGLTDQQVRQAPPVGDILGDLSAFLAHD--TVVGHNVGFDLAFIDAEITTTHSTPRAAS 129 Query: 122 RIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + T AR P R LN+L + + + HR H + D D+ + Sbjct: 130 LSLCTAESARALVPRSRVGRYRLNTLAEAF--DLDHRPSHRTVSDVLATLDLLHYL 183 >gi|323163498|gb|EFZ49324.1| ribonuclease T [Escherichia coli E128010] Length = 215 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF +AHNA FD F+ A Sbjct: 73 EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 133 AERVSLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|291295885|ref|YP_003507283.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279] gi|290470844|gb|ADD28263.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279] Length = 267 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 11/167 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V DIETTGL + IIE+ + L + +T F+ + P G P +L GI + Sbjct: 90 VVLDIETTGLSPTDHEIIELALIRLENGRRTV--FERLVNP-GVLIPPFISRLTGIRSQD 146 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 ++D ++ E W + NA I NA FD+GF+ +R+ +P ++DT+ Sbjct: 147 VRDAADIYTVLEEAWPLLD--NATLIIQNASFDLGFLQPRFKRLGYRLDNP--VVDTIHW 202 Query: 130 ARRKHPS-SRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKM 174 AR+ P ++ L+SL + + I ++H A+ D V +M Sbjct: 203 ARKALPGLTKRGLDSLAWAFDLGPIP--ARHRAMGDVETTLQVAHEM 247 >gi|28378418|ref|NP_785310.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1] gi|28271254|emb|CAD64158.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1] Length = 934 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 9/174 (5%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 K V DIETTG K DRII+IG + + N TF + P Sbjct: 1 MKPNTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKIIN-TFATDVNP-LTTVPAVIEN 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GI++ ++ P F + + Q ++AHN FD+ FIN+ELQR+ L P Sbjct: 59 LTGISNARVRKAPPFDDLAGTVYSLL--QGTVFVAHNVNFDLPFINSELQRVGYPEL-PI 115 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +DT+S+++ P+ S L L I H H A D+ + ++I + Sbjct: 116 QAVDTVSLSQILLPTASSFRLRDLSHLLAID--HNHPHSADSDAIATAHLFITL 167 >gi|312864644|ref|ZP_07724875.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei F0415] gi|311099771|gb|EFQ57984.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei F0415] Length = 823 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 11/176 (6%) Query: 1 MIRKNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M K + R V D+E T +II++G V +++ + +T+Q + P+ + Sbjct: 1 MTDKKQGRKYAVVDLEATSAS-TTAQIIQVGIV-IVEQGQIVQTYQTDVNPHEA-LTQHI 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 + L GITD+ L P FS + + + Q+ ++AHN KFD + +L + Sbjct: 58 IDLTGITDQQLAQAPDFSQVAGDIFQLI--QDCIFVAHNVKFDANLLAEQLFLEGYELRT 115 Query: 120 PSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P +DT+ +++ P+ R L+ L K + ++H H A+ D++ + + I + Sbjct: 116 P--RVDTVELSQVFFPTLERYRLSDLAKYLDLDLTH--AHTAIADAYATAQLLISI 167 >gi|300904499|ref|ZP_07122340.1| ribonuclease T [Escherichia coli MS 84-1] gi|300918020|ref|ZP_07134642.1| ribonuclease T [Escherichia coli MS 115-1] gi|301303165|ref|ZP_07209291.1| ribonuclease T [Escherichia coli MS 124-1] gi|300403565|gb|EFJ87103.1| ribonuclease T [Escherichia coli MS 84-1] gi|300414762|gb|EFJ98072.1| ribonuclease T [Escherichia coli MS 115-1] gi|300841574|gb|EFK69334.1| ribonuclease T [Escherichia coli MS 124-1] gi|315257547|gb|EFU37515.1| ribonuclease T [Escherichia coli MS 85-1] Length = 215 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF +AHNA FD F+ A Sbjct: 73 EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|297249562|ref|ZP_06933263.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str. B3196] gi|297173431|gb|EFH32795.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str. B3196] gi|326554073|gb|ADZ88712.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90] Length = 235 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + + +SP+A Sbjct: 20 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 77 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 78 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 135 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + T+ ARR L+ + G+ + +HGAL D++L + +Y+ + Sbjct: 136 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 190 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + K P + + R + Sbjct: 191 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 228 >gi|254458194|ref|ZP_05071620.1| exonuclease [Campylobacterales bacterium GD 1] gi|207085030|gb|EDZ62316.1| exonuclease [Campylobacterales bacterium GD 1] Length = 272 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 12/202 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIET G +IIEIGAV++ D ++ F+ + R+ + ++ GI+ E Sbjct: 69 FCIVDIETNGSKIDKHQIIEIGAVKVRDGVIIDK-FESLV--YCREINKHITEITGISVE 125 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 K+ P+ + EF F NA ++AH+ KFD FI+ +Q+I +PL +R I +L+ Sbjct: 126 DTKNAPNLKKVLYEFKSFLG--NAIFVAHDVKFDYKFISLSMQKIGLEPLL-NRSICSLA 182 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +A R S R L+ L + + + H A+ D +++ + ++ KT Sbjct: 183 LAERTIESYRYALSYLNDSLHL-NPNATHHRAMSDVITTYGLFMLSLHNLKSLDKDVKTA 241 Query: 189 EDRFFKEEKKTVPNISLLKRDK 210 ED K KR K Sbjct: 242 EDLI-----KFSKEAKRFKRPK 258 >gi|17988995|ref|NP_541628.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str. 16M] gi|260756615|ref|ZP_05868963.1| DNA polymerase III [Brucella abortus bv. 6 str. 870] gi|260760045|ref|ZP_05872393.1| DNA polymerase III [Brucella abortus bv. 4 str. 292] gi|260763284|ref|ZP_05875616.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59] gi|260882432|ref|ZP_05894046.1| DNA polymerase III [Brucella abortus bv. 9 str. C68] gi|261216075|ref|ZP_05930356.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya] gi|261217238|ref|ZP_05931519.1| DNA polymerase III [Brucella ceti M13/05/1] gi|261220458|ref|ZP_05934739.1| DNA polymerase III [Brucella ceti B1/94] gi|261313312|ref|ZP_05952509.1| DNA polymerase III [Brucella pinnipedialis M163/99/10] gi|261318701|ref|ZP_05957898.1| DNA polymerase III [Brucella pinnipedialis B2/94] gi|261320109|ref|ZP_05959306.1| DNA polymerase III [Brucella ceti M644/93/1] gi|265986499|ref|ZP_06099056.1| DNA polymerase III [Brucella pinnipedialis M292/94/1] gi|265992959|ref|ZP_06105516.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether] gi|265996191|ref|ZP_06108748.1| DNA polymerase III [Brucella ceti M490/95/1] gi|17984832|gb|AAL53892.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str. 16M] gi|260670363|gb|EEX57303.1| DNA polymerase III [Brucella abortus bv. 4 str. 292] gi|260673705|gb|EEX60526.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59] gi|260676723|gb|EEX63544.1| DNA polymerase III [Brucella abortus bv. 6 str. 870] gi|260871960|gb|EEX79029.1| DNA polymerase III [Brucella abortus bv. 9 str. C68] gi|260917682|gb|EEX84543.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya] gi|260919042|gb|EEX85695.1| DNA polymerase III [Brucella ceti B1/94] gi|260922327|gb|EEX88895.1| DNA polymerase III [Brucella ceti M13/05/1] gi|261292799|gb|EEX96295.1| DNA polymerase III [Brucella ceti M644/93/1] gi|261297924|gb|EEY01421.1| DNA polymerase III [Brucella pinnipedialis B2/94] gi|261302338|gb|EEY05835.1| DNA polymerase III [Brucella pinnipedialis M163/99/10] gi|262550488|gb|EEZ06649.1| DNA polymerase III [Brucella ceti M490/95/1] gi|262763829|gb|EEZ09861.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether] gi|264658696|gb|EEZ28957.1| DNA polymerase III [Brucella pinnipedialis M292/94/1] Length = 233 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + + +SP+A Sbjct: 18 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 76 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + T+ ARR L+ + G+ + +HGAL D++L + +Y+ + Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 188 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + K P + + R + Sbjct: 189 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 226 >gi|294083688|ref|YP_003550445.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum marinum IMCC1322] gi|292663260|gb|ADE38361.1| DNA polymerase III, epsilon subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 730 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 12/181 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPNGRKNSP 57 + +++ + D+ETTGL + DRI++IGA+ + + ++ + P G Sbjct: 26 MPLSEVPLVSLDLETTGLKPQTDRIVQIGAIGVDVAVAADRAEDDHIEMLVDP-GIAVPA 84 Query: 58 EALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP 117 + +HGI D L D + F N++ + +N FD+ F+ E +R + Sbjct: 85 ASTAVHGINDAMLADAKPIAVALPALRSFINKR--IILGYNIGFDLAFLTNEAKRQGLEW 142 Query: 118 LDPSRIIDTLSIARRKHPSSR---NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + P + DL++L YG+ + R H AL D+ + + VY KM Sbjct: 143 KWSGALCLRQLATVLLGPEAMLMIADLDALAAHYGVPVIGR--HTALGDATITAQVYHKM 200 Query: 175 M 175 + Sbjct: 201 V 201 >gi|16129610|ref|NP_416169.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. MG1655] gi|89108494|ref|AP_002274.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. W3110] gi|170081315|ref|YP_001730635.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B] gi|238900868|ref|YP_002926664.1| ribonuclease T (RNase T) [Escherichia coli BW2952] gi|300951237|ref|ZP_07165090.1| ribonuclease T [Escherichia coli MS 116-1] gi|300958527|ref|ZP_07170660.1| ribonuclease T [Escherichia coli MS 175-1] gi|301027673|ref|ZP_07190989.1| ribonuclease T [Escherichia coli MS 196-1] gi|301647832|ref|ZP_07247616.1| ribonuclease T [Escherichia coli MS 146-1] gi|307138309|ref|ZP_07497665.1| ribonuclease T [Escherichia coli H736] gi|331642247|ref|ZP_08343382.1| ribonuclease T [Escherichia coli H736] gi|266952|sp|P30014|RNT_ECOLI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|147688|gb|AAC37008.1| RNaseT [Escherichia coli] gi|1787941|gb|AAC74724.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. MG1655] gi|85675063|dbj|BAA15418.2| ribonuclease T (RNase T) [Escherichia coli str. K12 substr. W3110] gi|169889150|gb|ACB02857.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B] gi|238863473|gb|ACR65471.1| ribonuclease T (RNase T) [Escherichia coli BW2952] gi|260449223|gb|ACX39645.1| ribonuclease T [Escherichia coli DH1] gi|299879216|gb|EFI87427.1| ribonuclease T [Escherichia coli MS 196-1] gi|300314801|gb|EFJ64585.1| ribonuclease T [Escherichia coli MS 175-1] gi|300449493|gb|EFK13113.1| ribonuclease T [Escherichia coli MS 116-1] gi|301074022|gb|EFK88828.1| ribonuclease T [Escherichia coli MS 146-1] gi|309701879|emb|CBJ01191.1| ribonuclease T [Escherichia coli ETEC H10407] gi|315136293|dbj|BAJ43452.1| ribonuclease T [Escherichia coli DH1] gi|315618843|gb|EFU99426.1| ribonuclease T [Escherichia coli 3431] gi|323937257|gb|EGB33536.1| ribonuclease T [Escherichia coli E1520] gi|323940680|gb|EGB36871.1| ribonuclease T [Escherichia coli E482] gi|331039045|gb|EGI11265.1| ribonuclease T [Escherichia coli H736] Length = 215 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF +AHNA FD F+ A Sbjct: 73 EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|119026003|ref|YP_909848.1| putative DNA polymerase III epsilon subunit [Bifidobacterium adolescentis ATCC 15703] gi|118765587|dbj|BAF39766.1| putative DNA polymerase III epsilon subunit [Bifidobacterium adolescentis ATCC 15703] Length = 207 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 11/176 (6%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 N V D ETTGL K DR IEIG V + + + S A + Sbjct: 1 MNSQGYAVVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLIH---VDRSVGASWV 57 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 H IT L P F I E D + ++AHN FD F+ AE R+ P+D S Sbjct: 58 HHITARELLHAPDFEGIAHELRDLLAGR--VFVAHNVSFDSRFLLAEYSRMGASIPVDQS 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++ T+ ++R R L C+ +GI ++ H AL D+H + + +++ Sbjct: 116 TMLCTMKLSRSLI--GRGKLADCCEYFGI--ANEDAHSALSDAHATAILLGRLLEA 167 >gi|26991449|ref|NP_746874.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440] gi|24986524|gb|AAN70338.1|AE016675_8 exonuclease [Pseudomonas putida KT2440] Length = 203 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 10/194 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R E+ V +L+ + +Q + G L GIT Sbjct: 3 RIAVIDFETTGISPGTGCRATEVAVV-MLEGGRIVERYQSLMN-AGVPVPAFVAGLTGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ P + +E +F +AHNA FD F + EL RI + P + Sbjct: 61 TAMLRSAPPVEKVMNEVAEFVG--GTPLLAHNAAFDQKFWDYELGRIGRSRSQPFA--CS 116 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L ++RR P + + L +L + G+ + H A+ D+ + +++ + G + + G Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLP-DTGTAHRAMADAEMAANLLQYL-AGVLRQDHGV 174 Query: 186 KTNEDRFFKEEKKT 199 + +KT Sbjct: 175 QQLSHELLCRLQKT 188 >gi|229844583|ref|ZP_04464723.1| ribonuclease T [Haemophilus influenzae 6P18H1] gi|229812832|gb|EEP48521.1| ribonuclease T [Haemophilus influenzae 6P18H1] gi|301169030|emb|CBW28627.1| ribonuclease T (RNase T) [Haemophilus influenzae 10810] Length = 229 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIKPFEGANI 73 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R ++P P + DT S+A + L C I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMMVGGSQIN 182 + ++ M+ + Sbjct: 192 RTAKLFCYMVNHLKDLG 208 >gi|32266846|ref|NP_860878.1| DNA polymerase III subunit epsilon [Helicobacter hepaticus ATCC 51449] gi|32262898|gb|AAP77944.1| DNA polymerase III [Helicobacter hepaticus ATCC 51449] Length = 266 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 8/169 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K + DIET G + +IIEIGA+++ ++ F+ ++ + + +L Sbjct: 67 EWQKGNLVFVDIETNGAKPQQCQIIEIGALKVKGGEIIDK-FESYVYAD--EVPENITQL 123 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI + PS + EF F ++AHN FD GF++ L++ L + Sbjct: 124 TGICQADIAYAPSIKEVLGEFRAFLGTD--VFVAHNVNFDYGFVDYHLRQCGLFGLL-NP 180 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + T+ +A++ S R L L + GI + H A D+ V+ Sbjct: 181 KLCTIELAKKTILSPRYALGFLNEFLGIRTA--VTHRAYADALTSFRVF 227 >gi|319946618|ref|ZP_08020852.1| DNA polymerase III, epsilon subunit [Streptococcus australis ATCC 700641] gi|319746666|gb|EFV98925.1| DNA polymerase III, epsilon subunit [Streptococcus australis ATCC 700641] Length = 819 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 86/175 (49%), Gaps = 10/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K + V D+E T + ++ I + ++ + T++ + P+ + Sbjct: 1 MTTNVKRKYAVVDLEAT--SASSNAKIIQIGIVIIQDGQIVETYETDVNPH-EELDEHIR 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L GIT++ LK P FS + + ++ ++A ++AHN KFD + L + + P Sbjct: 58 QLTGITNQQLKKAPDFSQVARQVYELI--EDAVFVAHNVKFDANLLAESLFWEGFELITP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 IDT+ +A+ P+ R +L+SLC+ I + H H A+ D+ + +++K+ Sbjct: 116 --RIDTVELAQVFFPTLERYNLSSLCEELAIPLDH--AHSAISDAQATAQLFLKL 166 >gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium JCVIHMP022] gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium JCVIHMP022] Length = 328 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 13/213 (6%) Query: 5 NKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N V D ETTGL+ + DR IEIG V + + + + R A +H Sbjct: 13 NSKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGTLEDEHETLIRVH-RDI--GAQWIH 69 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSR 122 I+ L P F I E D + ++AHN FD F+ +E +R+ D P++ Sbjct: 70 HISAVELIHAPEFEGIARELRDLLAGR--VFVAHNVAFDSKFLLSEYRRLGADIPVNSHT 127 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 ++ T+ ++R L C+ +GI H AL D+H + + ++M + + Sbjct: 128 MLCTMKLSRSLIGVG--SLADCCREFGIDNED--AHSALSDAHATALLLGRLMDADPKWS 183 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 G++ D +E + P + L+R + L R Sbjct: 184 -GWRRRLD-AAEEAGEHWPELKSLERREWLPRR 214 >gi|212702995|ref|ZP_03311123.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098] gi|212673583|gb|EEB34066.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098] Length = 173 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 10/171 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + D ET+G + + + + ++ +F + P + +HG+T Sbjct: 5 RYVALDFETSGYAAHSACAVGLC---RIEDGAVTDSFYSLIRPPSSRVL--FTHVHGLTW 59 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 LKD P+F+ ++ + F A AHNA FD ++A Q + + TL Sbjct: 60 PLLKDAPTFTEVWPQLAAFMEGSRAIL-AHNAGFDRRVLHASCQALGLVQ-PQLPFLCTL 117 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ARR P + L+S+C +GI + H H A D+ +++Y+++ G Sbjct: 118 KGARRSLPLASRALDSVCDYFGIPLDH---HHAGSDARACAEIYLRLHALG 165 >gi|145636543|ref|ZP_01792211.1| ribonuclease T [Haemophilus influenzae PittHH] gi|145270368|gb|EDK10303.1| ribonuclease T [Haemophilus influenzae PittHH] Length = 229 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R ++P P + DT S+A + L C I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMMVGGSQIN 182 + ++ M+ + Sbjct: 192 RTAKLFCYMVNHLKDLG 208 >gi|311740325|ref|ZP_07714155.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC 33035] gi|311304608|gb|EFQ80681.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC 33035] Length = 229 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 7/167 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG + + DRIIE+ + + + + P+G++ + +HGIT+ Sbjct: 31 FAVIDTETTGFNKRYDRIIELAVARFDESFRLVDQWHTLINPDGKQI--KNSHIHGITNA 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127 + P+F +++EF + +AHNA FD I AE +RI D D +DT+ Sbjct: 89 DVAHAPTFPEVYTEFAARVD--GMVLMAHNAPFDSKMILAEAERITPDGEDVYFPFVDTI 146 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++A++ L++L G+ H A+ D+ + K+ Sbjct: 147 ALAKQMVSLRSYKLSALLDHVGLHNP--QSHAAIADATATGQMLNKL 191 >gi|254282911|ref|ZP_04957879.1| ribonuclease T [gamma proteobacterium NOR51-B] gi|219679114|gb|EED35463.1| ribonuclease T [gamma proteobacterium NOR51-B] Length = 214 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 22/201 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGA-VELLDYSKTNRTFQVF---LCP-NGRKNSP 57 R +V D+ET G ++ D ++EI A + ++ Q + P G P Sbjct: 12 RFRGFLPVVIDVETGGFNADTDAVLEIAATLVGMNDDGILTPKQTLCHNVEPFEGANLEP 71 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 AL+ GI E + + +F IFS EQ + HNA FD GFINA Sbjct: 72 SALEFTGIDPESPLRDAVPEAIAFGEIFSAIRKEIREQGCNRAILVGHNAHFDAGFINAA 131 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 R I ++P P DT ++A + + L C+ GI + H A D+ Sbjct: 132 SMRADIKRNPFHPFSHFDTATLAGLAY--GQTVLAKACRTAGIDFDNNEAHSAAYDAAKT 189 Query: 168 SDVYIKMM-----VGGSQINF 183 ++++ ++ +GG Q + Sbjct: 190 AELFCNIVNRWQALGGWQPDL 210 >gi|254509159|ref|ZP_05121258.1| ribonuclease T [Vibrio parahaemolyticus 16] gi|219547910|gb|EED24936.1| ribonuclease T [Vibrio parahaemolyticus 16] Length = 213 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 21/201 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NG 52 + K + R +V D+ET G ++K D ++EI AV L + T + P G Sbjct: 2 LTLKKRFRGYFPVVIDVETAGFNAKTDALLEICAVTLKMDDSGDLQPASTIHFHVEPFEG 61 Query: 53 RKNSPEALKLHGITDEF--LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDV 103 EAL G+ D F L+ S E + ++ A +AHNA+FD Sbjct: 62 ANIEKEALDFIGLRDPFSPLRGAIPESEALKEIYKLVRKEQKAADCSRAIIVAHNAQFDH 121 Query: 104 GFINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGAL 161 F+ R + + P P DT +++ + + L CK G+ ++ H AL Sbjct: 122 SFVMEASDRSKLKRVPFHPFATFDTATLSGLAY--GQTVLAKACKAAGMEFDNKEAHSAL 179 Query: 162 LDSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 180 YDTKKTAELFCGIVNKWKALG 200 >gi|297584389|ref|YP_003700169.1| DnaQ family exonuclease/DinG family helicase [Bacillus selenitireducens MLS10] gi|297142846|gb|ADH99603.1| DnaQ family exonuclease/DinG family helicase [Bacillus selenitireducens MLS10] Length = 935 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 9/169 (5%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R ++ D+ETTG+ K DRII+I A ++L+ + + F ++ + + L GI+ Sbjct: 3 RYVILDLETTGVAYDKGDRIIQI-AYQVLEDQEVLKRFSTYINYD-KPVPAFIQSLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E LK+ P F + E + + A ++AHN +FD+ F+N L+ +IDT Sbjct: 61 GEHLKNAPLFEEVAPEILS--DLEEAYFVAHNVEFDLKFLNESLEDAGYASF-QGPVIDT 117 Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + +AR PS L+ L K + +H + H A D ++ ++ Sbjct: 118 VELARICLPSEDSYRLSDLAKT--VQATHTAPHQADSDVEATRALFNEL 164 >gi|215486829|ref|YP_002329260.1| ribonuclease T [Escherichia coli O127:H6 str. E2348/69] gi|312966583|ref|ZP_07780803.1| ribonuclease T [Escherichia coli 2362-75] gi|331647141|ref|ZP_08348235.1| ribonuclease T [Escherichia coli M605] gi|331657625|ref|ZP_08358587.1| ribonuclease T [Escherichia coli TA206] gi|215264901|emb|CAS09287.1| ribonuclease T (RNase T) [Escherichia coli O127:H6 str. E2348/69] gi|281178725|dbj|BAI55055.1| ribonuclease T [Escherichia coli SE15] gi|312288693|gb|EFR16593.1| ribonuclease T [Escherichia coli 2362-75] gi|315299705|gb|EFU58947.1| ribonuclease T [Escherichia coli MS 16-3] gi|330911459|gb|EGH39969.1| ribonuclease T [Escherichia coli AA86] gi|331043924|gb|EGI16060.1| ribonuclease T [Escherichia coli M605] gi|331055873|gb|EGI27882.1| ribonuclease T [Escherichia coli TA206] Length = 215 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF +AHNA FD F+ A Sbjct: 73 EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|15802066|ref|NP_288088.1| ribonuclease T [Escherichia coli O157:H7 EDL933] gi|15831615|ref|NP_310388.1| ribonuclease T [Escherichia coli O157:H7 str. Sakai] gi|24113043|ref|NP_707553.1| ribonuclease T [Shigella flexneri 2a str. 301] gi|26247900|ref|NP_753940.1| ribonuclease T [Escherichia coli CFT073] gi|30063168|ref|NP_837339.1| ribonuclease T [Shigella flexneri 2a str. 2457T] gi|74312020|ref|YP_310439.1| ribonuclease T [Shigella sonnei Ss046] gi|82777129|ref|YP_403478.1| ribonuclease T [Shigella dysenteriae Sd197] gi|91210866|ref|YP_540852.1| ribonuclease T [Escherichia coli UTI89] gi|110641774|ref|YP_669504.1| ribonuclease T [Escherichia coli 536] gi|117623836|ref|YP_852749.1| ribonuclease T [Escherichia coli APEC O1] gi|157159164|ref|YP_001462944.1| ribonuclease T [Escherichia coli E24377A] gi|157161115|ref|YP_001458433.1| ribonuclease T [Escherichia coli HS] gi|168752335|ref|ZP_02777357.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113] gi|168759015|ref|ZP_02784022.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401] gi|168765301|ref|ZP_02790308.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501] gi|168771196|ref|ZP_02796203.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486] gi|168775884|ref|ZP_02800891.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196] gi|168783923|ref|ZP_02808930.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076] gi|168789491|ref|ZP_02814498.1| ribonuclease T [Escherichia coli O157:H7 str. EC869] gi|168802776|ref|ZP_02827783.1| ribonuclease T [Escherichia coli O157:H7 str. EC508] gi|170019996|ref|YP_001724950.1| ribonuclease T [Escherichia coli ATCC 8739] gi|170681755|ref|YP_001743601.1| ribonuclease T [Escherichia coli SMS-3-5] gi|187731741|ref|YP_001880408.1| ribonuclease T [Shigella boydii CDC 3083-94] gi|188496363|ref|ZP_03003633.1| ribonuclease T [Escherichia coli 53638] gi|191165895|ref|ZP_03027732.1| ribonuclease T [Escherichia coli B7A] gi|191173445|ref|ZP_03034973.1| ribonuclease T [Escherichia coli F11] gi|193064949|ref|ZP_03046025.1| ribonuclease T [Escherichia coli E22] gi|193070264|ref|ZP_03051208.1| ribonuclease T [Escherichia coli E110019] gi|194426088|ref|ZP_03058644.1| ribonuclease T [Escherichia coli B171] gi|194436646|ref|ZP_03068747.1| ribonuclease T [Escherichia coli 101-1] gi|195940215|ref|ZP_03085597.1| ribonuclease T [Escherichia coli O157:H7 str. EC4024] gi|208810464|ref|ZP_03252340.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206] gi|208816877|ref|ZP_03257997.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045] gi|208820253|ref|ZP_03260573.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042] gi|209396384|ref|YP_002270721.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115] gi|209918966|ref|YP_002293050.1| ribonuclease T [Escherichia coli SE11] gi|217328725|ref|ZP_03444806.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588] gi|218554220|ref|YP_002387133.1| ribonuclease T [Escherichia coli IAI1] gi|218558523|ref|YP_002391436.1| ribonuclease T [Escherichia coli S88] gi|218689598|ref|YP_002397810.1| ribonuclease T [Escherichia coli ED1a] gi|218695215|ref|YP_002402882.1| ribonuclease T [Escherichia coli 55989] gi|218699780|ref|YP_002407409.1| ribonuclease T [Escherichia coli IAI39] gi|218705152|ref|YP_002412671.1| ribonuclease T [Escherichia coli UMN026] gi|227885930|ref|ZP_04003735.1| exoribonuclease T [Escherichia coli 83972] gi|237705597|ref|ZP_04536078.1| ribonuclease T [Escherichia sp. 3_2_53FAA] gi|253773389|ref|YP_003036220.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161714|ref|YP_003044822.1| ribonuclease T [Escherichia coli B str. REL606] gi|254793269|ref|YP_003078106.1| ribonuclease T [Escherichia coli O157:H7 str. TW14359] gi|256018153|ref|ZP_05432018.1| ribonuclease T [Shigella sp. D9] gi|260843958|ref|YP_003221736.1| ribonuclease T [Escherichia coli O103:H2 str. 12009] gi|260855477|ref|YP_003229368.1| ribonuclease T [Escherichia coli O26:H11 str. 11368] gi|260868144|ref|YP_003234546.1| ribonuclease T [Escherichia coli O111:H- str. 11128] gi|261227902|ref|ZP_05942183.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. FRIK2000] gi|261258364|ref|ZP_05950897.1| ribonuclease T [Escherichia coli O157:H7 str. FRIK966] gi|291282784|ref|YP_003499602.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615] gi|293405152|ref|ZP_06649144.1| ribonuclease T [Escherichia coli FVEC1412] gi|293409965|ref|ZP_06653541.1| ribonuclease T [Escherichia coli B354] gi|293414968|ref|ZP_06657611.1| ribonuclease T [Escherichia coli B185] gi|293446028|ref|ZP_06662450.1| ribonuclease T [Escherichia coli B088] gi|297520520|ref|ZP_06938906.1| ribonuclease T [Escherichia coli OP50] gi|298380798|ref|ZP_06990397.1| ribonuclease T [Escherichia coli FVEC1302] gi|300819590|ref|ZP_07099783.1| ribonuclease T [Escherichia coli MS 107-1] gi|300821475|ref|ZP_07101622.1| ribonuclease T [Escherichia coli MS 119-7] gi|300901538|ref|ZP_07119609.1| ribonuclease T [Escherichia coli MS 198-1] gi|300924684|ref|ZP_07140632.1| ribonuclease T [Escherichia coli MS 182-1] gi|300930881|ref|ZP_07146250.1| ribonuclease T [Escherichia coli MS 187-1] gi|300939029|ref|ZP_07153724.1| ribonuclease T [Escherichia coli MS 21-1] gi|300987874|ref|ZP_07178425.1| ribonuclease T [Escherichia coli MS 200-1] gi|300995389|ref|ZP_07181069.1| ribonuclease T [Escherichia coli MS 45-1] gi|301026836|ref|ZP_07190236.1| ribonuclease T [Escherichia coli MS 69-1] gi|301051019|ref|ZP_07197863.1| ribonuclease T [Escherichia coli MS 185-1] gi|301326587|ref|ZP_07219926.1| ribonuclease T [Escherichia coli MS 78-1] gi|306813383|ref|ZP_07447573.1| ribonuclease T [Escherichia coli NC101] gi|307310775|ref|ZP_07590421.1| ribonuclease T [Escherichia coli W] gi|309788378|ref|ZP_07682982.1| ribonuclease T [Shigella dysenteriae 1617] gi|309793418|ref|ZP_07687845.1| ribonuclease T [Escherichia coli MS 145-7] gi|312969674|ref|ZP_07783857.1| ribonuclease T [Escherichia coli 1827-70] gi|331653048|ref|ZP_08354053.1| ribonuclease T [Escherichia coli M718] gi|331663127|ref|ZP_08364037.1| ribonuclease T [Escherichia coli TA143] gi|331668331|ref|ZP_08369179.1| ribonuclease T [Escherichia coli TA271] gi|332279200|ref|ZP_08391613.1| ribonuclease T [Shigella sp. D9] gi|54039257|sp|P66682|RNT_ECO57 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|54039258|sp|P66683|RNT_SHIFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|54042001|sp|P66681|RNT_ECOL6 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|122423656|sp|Q1RBE3|RNT_ECOUT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123148046|sp|Q0THH6|RNT_ECOL5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123562458|sp|Q32FB8|RNT_SHIDS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123617229|sp|Q3Z208|RNT_SHISS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|166228563|sp|A1ABJ5|RNT_ECOK1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|166991088|sp|A7ZMB5|RNT_ECO24 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|166991089|sp|A8A0J6|RNT_ECOHS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|12515647|gb|AAG56641.1|AE005388_6 RNase T, degrades tRNA [Escherichia coli O157:H7 str. EDL933] gi|26108303|gb|AAN80505.1|AE016761_80 Ribonuclease T [Escherichia coli CFT073] gi|13361828|dbj|BAB35784.1| RNase T [Escherichia coli O157:H7 str. Sakai] gi|24052011|gb|AAN43260.1| RNase T [Shigella flexneri 2a str. 301] gi|30041420|gb|AAP17148.1| RNase T [Shigella flexneri 2a str. 2457T] gi|73855497|gb|AAZ88204.1| RNase T [Shigella sonnei Ss046] gi|81241277|gb|ABB61987.1| RNase T [Shigella dysenteriae Sd197] gi|91072440|gb|ABE07321.1| RNase T, degrades tRNA [Escherichia coli UTI89] gi|110343366|gb|ABG69603.1| ribonuclease T [Escherichia coli 536] gi|115512960|gb|ABJ01035.1| RNase T [Escherichia coli APEC O1] gi|157066795|gb|ABV06050.1| ribonuclease T [Escherichia coli HS] gi|157081194|gb|ABV20902.1| ribonuclease T [Escherichia coli E24377A] gi|169754924|gb|ACA77623.1| ribonuclease T [Escherichia coli ATCC 8739] gi|170519473|gb|ACB17651.1| ribonuclease T [Escherichia coli SMS-3-5] gi|187428733|gb|ACD08007.1| ribonuclease T [Shigella boydii CDC 3083-94] gi|187768648|gb|EDU32492.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196] gi|188013802|gb|EDU51924.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113] gi|188491562|gb|EDU66665.1| ribonuclease T [Escherichia coli 53638] gi|188998818|gb|EDU67804.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076] gi|189354299|gb|EDU72718.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401] gi|189360025|gb|EDU78444.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486] gi|189364907|gb|EDU83323.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501] gi|189370964|gb|EDU89380.1| ribonuclease T [Escherichia coli O157:H7 str. EC869] gi|189375329|gb|EDU93745.1| ribonuclease T [Escherichia coli O157:H7 str. EC508] gi|190904026|gb|EDV63738.1| ribonuclease T [Escherichia coli B7A] gi|190906287|gb|EDV65898.1| ribonuclease T [Escherichia coli F11] gi|192927436|gb|EDV82054.1| ribonuclease T [Escherichia coli E22] gi|192956445|gb|EDV86904.1| ribonuclease T [Escherichia coli E110019] gi|194416143|gb|EDX32409.1| ribonuclease T [Escherichia coli B171] gi|194424678|gb|EDX40664.1| ribonuclease T [Escherichia coli 101-1] gi|208724980|gb|EDZ74687.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206] gi|208731220|gb|EDZ79909.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045] gi|208740376|gb|EDZ88058.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042] gi|209157784|gb|ACI35217.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115] gi|209769438|gb|ACI83031.1| RNase T [Escherichia coli] gi|209769440|gb|ACI83032.1| RNase T [Escherichia coli] gi|209769442|gb|ACI83033.1| RNase T [Escherichia coli] gi|209769444|gb|ACI83034.1| RNase T [Escherichia coli] gi|209769446|gb|ACI83035.1| RNase T [Escherichia coli] gi|209912225|dbj|BAG77299.1| ribonuclease T [Escherichia coli SE11] gi|217318072|gb|EEC26499.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588] gi|218351947|emb|CAU97679.1| ribonuclease T (RNase T) [Escherichia coli 55989] gi|218360988|emb|CAQ98561.1| ribonuclease T (RNase T) [Escherichia coli IAI1] gi|218365292|emb|CAR03013.1| ribonuclease T (RNase T) [Escherichia coli S88] gi|218369766|emb|CAR17537.1| ribonuclease T (RNase T) [Escherichia coli IAI39] gi|218427162|emb|CAR08045.2| ribonuclease T (RNase T) [Escherichia coli ED1a] gi|218432249|emb|CAR13139.1| ribonuclease T (RNase T) [Escherichia coli UMN026] gi|222033411|emb|CAP76152.1| ribonuclease T [Escherichia coli LF82] gi|226900354|gb|EEH86613.1| ribonuclease T [Escherichia sp. 3_2_53FAA] gi|227837109|gb|EEJ47575.1| exoribonuclease T [Escherichia coli 83972] gi|242377382|emb|CAQ32129.1| RNase T [Escherichia coli BL21(DE3)] gi|253324433|gb|ACT29035.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973615|gb|ACT39286.1| ribonuclease T [Escherichia coli B str. REL606] gi|253977810|gb|ACT43480.1| ribonuclease T [Escherichia coli BL21(DE3)] gi|254592669|gb|ACT72030.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. TW14359] gi|257754126|dbj|BAI25628.1| ribonuclease T [Escherichia coli O26:H11 str. 11368] gi|257759105|dbj|BAI30602.1| ribonuclease T [Escherichia coli O103:H2 str. 12009] gi|257764500|dbj|BAI35995.1| ribonuclease T [Escherichia coli O111:H- str. 11128] gi|281601087|gb|ADA74071.1| Ribonuclease T [Shigella flexneri 2002017] gi|284921576|emb|CBG34648.1| ribonuclease T [Escherichia coli 042] gi|290762657|gb|ADD56618.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615] gi|291322858|gb|EFE62286.1| ribonuclease T [Escherichia coli B088] gi|291427360|gb|EFF00387.1| ribonuclease T [Escherichia coli FVEC1412] gi|291432616|gb|EFF05595.1| ribonuclease T [Escherichia coli B185] gi|291470433|gb|EFF12917.1| ribonuclease T [Escherichia coli B354] gi|294491548|gb|ADE90304.1| ribonuclease T [Escherichia coli IHE3034] gi|298278240|gb|EFI19754.1| ribonuclease T [Escherichia coli FVEC1302] gi|300297314|gb|EFJ53699.1| ribonuclease T [Escherichia coli MS 185-1] gi|300306022|gb|EFJ60542.1| ribonuclease T [Escherichia coli MS 200-1] gi|300355068|gb|EFJ70938.1| ribonuclease T [Escherichia coli MS 198-1] gi|300395276|gb|EFJ78814.1| ribonuclease T [Escherichia coli MS 69-1] gi|300406150|gb|EFJ89688.1| ribonuclease T [Escherichia coli MS 45-1] gi|300419111|gb|EFK02422.1| ribonuclease T [Escherichia coli MS 182-1] gi|300456057|gb|EFK19550.1| ribonuclease T [Escherichia coli MS 21-1] gi|300461297|gb|EFK24790.1| ribonuclease T [Escherichia coli MS 187-1] gi|300525978|gb|EFK47047.1| ribonuclease T [Escherichia coli MS 119-7] gi|300527838|gb|EFK48900.1| ribonuclease T [Escherichia coli MS 107-1] gi|300846749|gb|EFK74509.1| ribonuclease T [Escherichia coli MS 78-1] gi|305853128|gb|EFM53568.1| ribonuclease T [Escherichia coli NC101] gi|306908953|gb|EFN39449.1| ribonuclease T [Escherichia coli W] gi|307553675|gb|ADN46450.1| ribonuclease T [Escherichia coli ABU 83972] gi|307626861|gb|ADN71165.1| ribonuclease T [Escherichia coli UM146] gi|308123005|gb|EFO60267.1| ribonuclease T [Escherichia coli MS 145-7] gi|308923760|gb|EFP69263.1| ribonuclease T [Shigella dysenteriae 1617] gi|310337959|gb|EFQ03048.1| ribonuclease T [Escherichia coli 1827-70] gi|312946253|gb|ADR27080.1| ribonuclease T [Escherichia coli O83:H1 str. NRG 857C] gi|313648931|gb|EFS13368.1| ribonuclease T [Shigella flexneri 2a str. 2457T] gi|315060959|gb|ADT75286.1| ribonuclease T (RNase T) [Escherichia coli W] gi|315286357|gb|EFU45793.1| ribonuclease T [Escherichia coli MS 110-3] gi|320174139|gb|EFW49304.1| Ribonuclease T [Shigella dysenteriae CDC 74-1112] gi|320181325|gb|EFW56244.1| Ribonuclease T [Shigella boydii ATCC 9905] gi|320188340|gb|EFW63002.1| Ribonuclease T [Escherichia coli O157:H7 str. EC1212] gi|320195450|gb|EFW70075.1| Ribonuclease T [Escherichia coli WV_060327] gi|320197835|gb|EFW72443.1| Ribonuclease T [Escherichia coli EC4100B] gi|320642007|gb|EFX11371.1| ribonuclease T [Escherichia coli O157:H7 str. G5101] gi|320647324|gb|EFX16132.1| ribonuclease T [Escherichia coli O157:H- str. 493-89] gi|320652618|gb|EFX20887.1| ribonuclease T [Escherichia coli O157:H- str. H 2687] gi|320653004|gb|EFX21200.1| ribonuclease T [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658687|gb|EFX26364.1| ribonuclease T [Escherichia coli O55:H7 str. USDA 5905] gi|323152841|gb|EFZ39111.1| ribonuclease T [Escherichia coli EPECa14] gi|323169213|gb|EFZ54889.1| ribonuclease T [Shigella sonnei 53G] gi|323169961|gb|EFZ55617.1| ribonuclease T [Escherichia coli LT-68] gi|323180968|gb|EFZ66506.1| ribonuclease T [Escherichia coli 1180] gi|323186075|gb|EFZ71431.1| ribonuclease T [Escherichia coli 1357] gi|323378470|gb|ADX50738.1| ribonuclease T [Escherichia coli KO11] gi|323948052|gb|EGB44044.1| ribonuclease T [Escherichia coli H120] gi|323952162|gb|EGB48035.1| ribonuclease T [Escherichia coli H252] gi|323956663|gb|EGB52400.1| ribonuclease T [Escherichia coli H263] gi|323962144|gb|EGB57739.1| ribonuclease T [Escherichia coli H489] gi|323968420|gb|EGB63826.1| ribonuclease T [Escherichia coli M863] gi|323973968|gb|EGB69140.1| ribonuclease T [Escherichia coli TA007] gi|323978209|gb|EGB73295.1| ribonuclease T [Escherichia coli TW10509] gi|324007017|gb|EGB76236.1| ribonuclease T [Escherichia coli MS 57-2] gi|324011423|gb|EGB80642.1| ribonuclease T [Escherichia coli MS 60-1] gi|324016541|gb|EGB85760.1| ribonuclease T [Escherichia coli MS 117-3] gi|324119138|gb|EGC13026.1| ribonuclease T [Escherichia coli E1167] gi|326342019|gb|EGD65800.1| Ribonuclease T [Escherichia coli O157:H7 str. 1044] gi|326343571|gb|EGD67333.1| Ribonuclease T [Escherichia coli O157:H7 str. 1125] gi|327252769|gb|EGE64423.1| ribonuclease T [Escherichia coli STEC_7v] gi|331049146|gb|EGI21218.1| ribonuclease T [Escherichia coli M718] gi|331058926|gb|EGI30903.1| ribonuclease T [Escherichia coli TA143] gi|331063525|gb|EGI35436.1| ribonuclease T [Escherichia coli TA271] gi|332101552|gb|EGJ04898.1| ribonuclease T [Shigella sp. D9] gi|332756966|gb|EGJ87309.1| ribonuclease T [Shigella flexneri 4343-70] gi|332758172|gb|EGJ88497.1| ribonuclease T [Shigella flexneri 2747-71] gi|332758486|gb|EGJ88807.1| ribonuclease T [Shigella flexneri K-671] gi|332767056|gb|EGJ97255.1| ribonuclease T [Shigella flexneri 2930-71] gi|333004001|gb|EGK23536.1| ribonuclease T [Shigella flexneri K-218] gi|333005308|gb|EGK24828.1| ribonuclease T [Shigella flexneri VA-6] gi|333005888|gb|EGK25404.1| ribonuclease T [Shigella flexneri K-272] gi|333017888|gb|EGK37193.1| ribonuclease T [Shigella flexneri K-304] gi|333018868|gb|EGK38161.1| ribonuclease T [Shigella flexneri K-227] Length = 215 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF +AHNA FD F+ A Sbjct: 73 EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|319955723|ref|YP_004166990.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM 14237] gi|319424383|gb|ADV51492.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM 14237] Length = 456 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 9/157 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTG + I EI A+ D + F + P ++ P + L GIT++ Sbjct: 2 YAILDIETTGGKYNEEGITEI-AIHKFDGHQVVDQFISLVNPE-KEIQPFVVNLTGITNK 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P F + + + IAHNA+FD + E +R+ + + I T+ Sbjct: 60 MLVTAPKFYEVAKRIVEI--TEGTVLIAHNAQFDYRILRTEFRRLGFNF--ERKTICTVE 115 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDS 164 +A++ P L L + GI +S R H A D+ Sbjct: 116 LAQKLLPEAESYSLGKLVRSLGIPVSDR--HRANGDA 150 >gi|152968358|ref|YP_001364142.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans SRS30216] gi|151362875|gb|ABS05878.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans SRS30216] Length = 224 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 17/219 (7%) Query: 3 RKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 R+ + R V D+ETTGL + DR+++I L R++ + P+ P Sbjct: 20 RRYRHRYAVLDVETTGLRPETGDRVVQIAVTLLDARGTVERSWSSLVDPHR---DPGPTH 76 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGIT E L P+F+ + + + ++AHNA+FD F++AE++ L Sbjct: 77 VHGITAERLAGAPTFAQLAPTVAGLLDGR--VFVAHNARFDWKFVSAEMRAAGVH-LPVR 133 Query: 122 RIIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + T +A+R P L +L + +G+ H A D+ +L +V + ++ + Sbjct: 134 QRLCTWELAQRLDLPVENLKLATLAEHWGVR--QLRPHDAEDDTRVLVEVLREELLDAAG 191 Query: 181 INFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + V L R + L RI + Sbjct: 192 QRLDLPIV-------VPREVRRPPLSARLRVLVERIAQS 223 >gi|302773125|ref|XP_002969980.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii] gi|300162491|gb|EFJ29104.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii] Length = 1208 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 17/187 (9%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I KM IVFD+ETTG + DRIIE A +L + T + P GR Sbjct: 170 IPAPKMTIIVFDLETTGFRAAGDRIIEFAARDLAGGDR--STISALVNP-GRTVPYLITA 226 Query: 62 LHGITDEFL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHN-AKFDVGFINAELQRI 113 + GIT++ + PS+ + F ++ +AHN +FDV F+ E Q Sbjct: 227 VTGITNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSC 286 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLS 168 + +D++ +AR L+ L + YG+ + R H A+ D ++L+ Sbjct: 287 GIQVPEWWLFLDSMPLAREAKKKFGYNWRSLKLSVLHEAYGLHSTER-AHRAMADVNMLA 345 Query: 169 DVYIKMM 175 V ++ Sbjct: 346 SVLEAIV 352 >gi|302799380|ref|XP_002981449.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii] gi|300150989|gb|EFJ17637.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii] Length = 1254 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 17/187 (9%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I KM IVFD+ETTG + DRIIE A +L + T + P GR Sbjct: 170 IPAPKMTIIVFDLETTGFRAAGDRIIEFAARDLAGGDR--STISALVNP-GRTVPYLITA 226 Query: 62 LHGITDEFL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHN-AKFDVGFINAELQRI 113 + GIT++ + PS+ + F ++ +AHN +FDV F+ E Q Sbjct: 227 VTGITNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSC 286 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRN-----DLNSLCKRYGITISHRSKHGALLDSHLLS 168 + +D++ +AR L+ L + YG+ + R H A+ D ++L+ Sbjct: 287 GIQVPEWWLFLDSMPLARETKKKFGYNWRSLKLSVLHEAYGLHSTER-AHRAMADVNMLA 345 Query: 169 DVYIKMM 175 V ++ Sbjct: 346 SVLEAIV 352 >gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec] gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec] Length = 389 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 80/212 (37%), Gaps = 10/212 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + V D+ETTGL DR++ + V + L P P + +HG+ Sbjct: 74 RRPYAVVDVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTLLDPGC---DPGPVHIHGL 130 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + L P+F+++ E + +AHNA FD + E RI + + Sbjct: 131 TRQRLAGSPTFAAVADEVAGLLAGR--VLVAHNAAFDWRMLAGEAMRIG-TTIPVEWRLC 187 Query: 126 TLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 TL++A R + L SL +G+ R H A D+ +L+ + +++ + Sbjct: 188 TLTLASRLGLELPSLRLASLAAYWGVV--QRRAHDAQDDAEVLAALLPRILQRAADQYLE 245 Query: 185 FKTNEDRFFKEEKKTV-PNISLLKRDKPLFTR 215 + P + R P R Sbjct: 246 LPLTRCGVDHDGVTVRPPRFAAAGRTPPCRYR 277 >gi|325478691|gb|EGC81802.1| CRISPR-associated endoribonuclease Cas2 [Anaerococcus prevotii ACS-065-V-Col13] Length = 292 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 5/168 (2%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + +V DIET+GLD + +IIEIGAV + F+ + K S E +KL Sbjct: 119 KTQAKKYVVVDIETSGLDYEKHKIIEIGAVLTNSQGEVLDKFESLIRQEI-KLSNEIIKL 177 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GITD L + + +F F +N + +N FD+ F+N L++ + + + Sbjct: 178 TGITDNDLINGGDEKKVLEDFVCFI--KNHPLVGYNFNFDMKFLNYNLEKNSLKEITNTT 235 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + R K L ++ K YGI + H AL D+ + ++ Sbjct: 236 YDLKTYVKREKMFLKNYKLETVLKEYGIK--KKVDHRALADALVTVNL 281 >gi|88800698|ref|ZP_01116257.1| ribonuclease T [Reinekea sp. MED297] gi|88776562|gb|EAR07778.1| ribonuclease T [Reinekea sp. MED297] Length = 215 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++K D ++EI AV L + + + + P G AL Sbjct: 10 PVVIDVETAGFNAKTDALLEIAAVTLKMTDDGWLEQDECLFFNVEPFEGANLEQAALDFT 69 Query: 64 GITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI L+ E + + A + HNA FD F+ A +R N Sbjct: 70 GIDPHNPLRGAVDEGDALKEIFKMIRKGMKAAGCKRAILVGHNANFDHNFLFAAAERANN 129 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + + L C+ G+ S + H A D+ ++++ Sbjct: 130 KRNPFHPFTTFDTAALSALVY--GQTVLKRACQASGVEFSDKEAHNAEYDTRKTAELFCN 187 Query: 174 MMVGGSQIN 182 M+ + Sbjct: 188 MINQWKTLG 196 >gi|291617286|ref|YP_003520028.1| Rnt [Pantoea ananatis LMG 20103] gi|291152316|gb|ADD76900.1| Rnt [Pantoea ananatis LMG 20103] gi|327393738|dbj|BAK11160.1| ribonuclease T Rnt [Pantoea ananatis AJ13355] Length = 223 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 22/213 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCPN-GRKNSP 57 R +V D+ET G +++ D ++E+ A+ L + ++T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAQTDALLEVAAITLKMDDEGWLHHDQTLHFHVEPFVGALLHP 72 Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109 EAL GI L+ S + A +AHNA FD+ F+NA Sbjct: 73 EALAFTGIDPSNPLRGAVSEYEALHAIFKLVRKGIKDTGCNRAIMVAHNATFDLNFMNAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L CK G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTAALSGLVL--GQTVLAKACKAAGMEFDSSQAHSALYDTQQT 190 Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKE 195 + ++ +++ +GG + + E + E Sbjct: 191 ATLFCELVNRWKRLGGWPLALAEEATEYQGAAE 223 >gi|325297487|ref|YP_004257404.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] gi|324317040|gb|ADY34931.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] Length = 183 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 9/166 (5%) Query: 9 KIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 I D ET TG K I E G + + T +T + P G + S +++HGI Sbjct: 6 FIAIDFETATG---KRASICEAGICVVRNGEVT-KTRSWLVRPQGNRYSYWNMQIHGIRP 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 D P F +++E ++ + +AHNA FDVG I L+ + D +L Sbjct: 62 NDTVDSPEFPEVWAEISEYLKDIP-ILVAHNAAFDVGCIRHSLELYGMEKPDI-TYYCSL 119 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 AR+ + N L+ LC ++ I H A D+ + + ++++ Sbjct: 120 RAARKLYDFGCNSLDYLCDQFKIPY--GRHHRAGDDAEMCARLFLR 163 >gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] Length = 317 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 13/214 (6%) Query: 4 KNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 N V D ETTGL+ + DR IEIG V + + + + R A + Sbjct: 1 MNSKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIRVH-RDI--GAQWI 57 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPS 121 H I+ L P F I E D + ++AHN FD F+ +E +R+ D P++ Sbjct: 58 HHISAVELIHAPEFEGIARELRDLLAGR--VFVAHNVAFDSKFLLSEYRRLGTDIPVNSH 115 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 ++ T+ ++R L C+ +GI H AL D+H + + ++M + Sbjct: 116 TMLCTMKLSRSLIGVG--SLADCCREFGIDNED--AHSALSDAHATALLLGRLMDADPEW 171 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 + G++ D +E + P ++ +R + L R Sbjct: 172 S-GWRRRLD-AAEEAGEHWPELTSFERREWLPRR 203 >gi|261821926|ref|YP_003260032.1| ribonuclease T [Pectobacterium wasabiae WPP163] gi|261605939|gb|ACX88425.1| ribonuclease T [Pectobacterium wasabiae WPP163] Length = 223 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 22/213 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++E+ AV + + + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEVAAVTLKMDQDGWLQPDETLHFHVEPFEGAILEP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 AL +GI + + + IF +Q +AHNA FD F+ A Sbjct: 73 AALAFNGIDPTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAA 132 Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 R ++P P DT +++ + L C GI H AL D++ Sbjct: 133 ADRCSLKRNPFHPFATFDTAALSGLVL--GQTVLAKACITAGIAFDSSQAHSALYDTNQT 190 Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKE 195 + ++ +++ +GG + ED ++ Sbjct: 191 ALLFCELVNRWKRLGGWPLALEENAAEDASTED 223 >gi|157374989|ref|YP_001473589.1| ribonuclease T [Shewanella sediminis HAW-EB3] gi|157317363|gb|ABV36461.1| ribonuclease T [Shewanella sediminis HAW-EB3] Length = 223 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA-VELLDYSKT---NRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI + +D ++T + P G PEAL Sbjct: 19 PVVIDVETAGFNAQTDALLEIAVTMLKMDDEGVLGLDKTLHYHIEPFEGANLEPEALAFT 78 Query: 64 GITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI + +K +F IF E +AHNA FD GF++ ++R + Sbjct: 79 GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAAGCHRSIIVAHNAAFDHGFVSKAVERNGL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT ++A L C GI + H AL D+ ++++ Sbjct: 139 KRTPFHPFATFDTATLAGLAI--GHTVLAKACSIAGIPFDNNEAHSALYDTERTAELFCL 196 Query: 174 MMVGGSQIN 182 ++ + Sbjct: 197 IVNRWKALG 205 >gi|332090790|gb|EGI95882.1| ribonuclease T [Shigella boydii 5216-82] Length = 215 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF +AHNA FD F+ A Sbjct: 73 EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTTALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|237731384|ref|ZP_04561865.1| ribonuclease T [Citrobacter sp. 30_2] gi|226906923|gb|EEH92841.1| ribonuclease T [Citrobacter sp. 30_2] Length = 215 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF + +AHNA FD F+ A Sbjct: 73 EALAFNGIDPNNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLSL--GQTVLSKACLAAGMEFDGNQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|304310986|ref|YP_003810584.1| hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1] gi|301796719|emb|CBL44931.1| Hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1] Length = 300 Score = 134 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 10/166 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I D ETTGL++ + I EIGAV+ + F++F P G +L GITDE Sbjct: 36 IAIDFETTGLEASSAAITEIGAVKFKISGEIVDQFEMFAYP-GTPIPVRIQELTGITDEM 94 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++ +F D+ + N +IAHNA F+ F+ A ++ + P IDTL I Sbjct: 95 VTGCEPPLFVWKKFLDWADGANT-FIAHNAPFEARFVRALYEKEGEMP--NIYFIDTLQI 151 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +R + P S L +L K H AL D+ S +Y ++ Sbjct: 152 SRNRLPEESSYSLKNLVK-----FKEGEPHRALADAKACSTLYCRL 192 >gi|257785157|ref|YP_003180374.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] gi|257473664|gb|ACV51783.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469] Length = 978 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 12/178 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL K +IEI A +L R FQ F+ P G E L ITDE Sbjct: 19 IVVLDTETTGLSFKKCSLIEISAAKLSGREIIER-FQTFVDP-GCPIPEEITTLTSITDE 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K PS + +F +AHNA FD FI +R+ IDTLS Sbjct: 77 DVKGAPSAKEAVAALAEFVG--GLPVLAHNATFDRTFI----ERVPGGTSVSDTWIDTLS 130 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++R P S + L+S+ + +G + + H A D L ++ +++G + G Sbjct: 131 LSRIALPRLSSHKLSSMAEAFG---TMKVTHRASDDVDALCGMWRILLLGLMNLPRGL 185 >gi|315446380|ref|YP_004079259.1| DNA polymerase III subunit epsilon [Mycobacterium sp. Spyr1] gi|315264683|gb|ADU01425.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. Spyr1] Length = 333 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 25/213 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ET+G RI+ + A+ L D ++ L P P +HG+T E Sbjct: 20 WAVVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAE 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ +P+F + + + + +AHN FD F++AE + + + L ++ T+ Sbjct: 77 MLEGQPTFGDVVGDLCEVL--RGRTLVAHNVGFDYSFLSAEAELVGAE-LPIDTVMCTVE 133 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR N L +L +G+ + H AL D+ +L+ + ++V Sbjct: 134 LARRLDLGLENLRLETLAAHWGV--TQMRPHDALDDAMVLAQILKPVLVRA--------- 182 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 +E +K +P + +R P R+T +E Sbjct: 183 ------QERRKWLPVHPVGRRTWP-NGRVTHDE 208 >gi|149912028|ref|ZP_01900621.1| ribonuclease T [Moritella sp. PE36] gi|149804889|gb|EDM64924.1| ribonuclease T [Moritella sp. PE36] Length = 231 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 22/203 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V DIET G +++ D ++EI A ++ Y K + T + P G AL Sbjct: 18 PVVIDIETAGFNAQTDAMLEIAASILEMDEDGYLKISHTLHFNVEPFEGANLEQAALDFT 77 Query: 64 GITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINA--ELQRI 113 GI L+ +E + A +AHNA FD F++A ++I Sbjct: 78 GIDPTNPLRGAVPEREAITEIYKAVRKGLKDTGCHRAIMVAHNAAFDHAFLSAASNREKI 137 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + L C GI H+ H A D+ ++++ Sbjct: 138 KRNPFHPFATFDTTTLAGLA--VGQTVLAKACVAAGIPFDHKQAHSAKYDTEQTAELFCY 195 Query: 174 MM-----VGGSQINFGFKTNEDR 191 ++ +GG + + ++D Sbjct: 196 IVNKWKDMGGWPLAVPEEEDDDA 218 >gi|315290558|gb|EFU49932.1| ribonuclease T [Escherichia coli MS 153-1] Length = 215 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF +AHNA FD F+ A Sbjct: 73 EALAFNGIDPSDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|317489230|ref|ZP_07947747.1| exonuclease [Eggerthella sp. 1_3_56FAA] gi|325832235|ref|ZP_08165234.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1] gi|316911631|gb|EFV33223.1| exonuclease [Eggerthella sp. 1_3_56FAA] gi|325486071|gb|EGC88525.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1] Length = 998 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 11/173 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG +D + +I A ++ + F F+ P G+ + L I D Sbjct: 43 VVLDTETTGFSFNHDELTQIAAAR-MEQGEIVEWFITFVNP-GKPIPEDVAHLTDIHDSD 100 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P + ++ +F +A+ +AHNA+FD F + PL + ID+L + Sbjct: 101 VADAPLPADALAKLVEFIG--DAKVVAHNAEFDRTFTTRH---PSGYPLLENTWIDSLDL 155 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 AR P + + L L + +G +S H A D ++ ++ G + + Sbjct: 156 ARIALPRMKSHRLLDLVRAFGAPLS---THRADADVEATCAIFRILLAGVAAM 205 >gi|68535768|ref|YP_250473.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411] gi|68263367|emb|CAI36855.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411] Length = 222 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 8/149 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG + + DRIIEI AV + ++ L P+G+ + +HGIT++ Sbjct: 21 FAVIDTETTGFNKRYDRIIEIAAVRADAHFNPVDSWHTLLNPDGKAI--KNSHIHGITND 78 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI----NKDPLDPSRII 124 + P+FS ++ +F + + AHNA FD I AE+ R+ + + + I Sbjct: 79 MVATAPTFSEVYGDFTSYID--GMHLFAHNAPFDSKMIVAEVDRMTGVDDGNEDEFFPFI 136 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITIS 153 DT+ +A++ +L +L R G+ Sbjct: 137 DTIDLAKQMLDRGPYNLPALLDRLGLDNP 165 >gi|331683160|ref|ZP_08383761.1| ribonuclease T [Escherichia coli H299] gi|331079375|gb|EGI50572.1| ribonuclease T [Escherichia coli H299] Length = 215 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF +AHNA FD F+ A Sbjct: 73 EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHNFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|332686697|ref|YP_004456471.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius ATCC 35311] gi|332370706|dbj|BAK21662.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius ATCC 35311] Length = 924 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 10/208 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG+D DRII+ G V L++ + + PN R + L GI++ Sbjct: 7 YAVVDLETTGVDPTVDRIIQFGCV-LIENGEIVSHIGTDVNPN-RIIPKQIQHLTGISNA 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F I ++ + ++AHN FD F++ EL R PL IDT+ Sbjct: 65 RVQKAPYFEDIAIMIFNLL--TDTIFVAHNVHFDYRFLSHELVRCGLPPLTIDA-IDTVE 121 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF----G 184 +A+ P+ R+ + + H H A D+ + +++ + + + Sbjct: 122 LAQIFLPTERSF-RLSDLSSSLGLLHNHPHQADSDAQVTAELLLIIEQKMYTLPLITMEK 180 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPL 212 ++ ++ + + I ++ P+ Sbjct: 181 ISQLGEQLVRQTGEYIQAIYKKMKEHPV 208 >gi|254699857|ref|ZP_05161685.1| DNA polymerase III, epsilon chain [Brucella suis bv. 5 str. 513] Length = 224 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + T+ ARR L+ + G+ + +HGAL D++L + +Y+ + Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + K P + + R + Sbjct: 180 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRGSAA 217 >gi|238749424|ref|ZP_04610929.1| Ribonuclease T [Yersinia rohdei ATCC 43380] gi|238712079|gb|EEQ04292.1| Ribonuclease T [Yersinia rohdei ATCC 43380] Length = 226 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI AV L + ++T + P G PEAL + Sbjct: 30 PVVIDVETAGFNAQTDALLEIAAVTLRMDKDGWLLPDQTLHFHVEPFEGANLQPEALAFN 89 Query: 64 GITD-EFLKDKPS----FSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI L+ S +IF+ EQ +AHNA FD F+ A +R + Sbjct: 90 GIDPTNPLRGAVSEYNALHAIFTAIRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASL 149 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C GI H AL D+ + ++ + Sbjct: 150 KRNPFHPFATFDTAALSGLVL--GQTVLAKACLTAGIPFDSSQAHSALYDTMQTATLFCE 207 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 208 LVNRWKKLG 216 >gi|225629116|ref|ZP_03787149.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella ceti str. Cudo] gi|237817070|ref|ZP_04596062.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella abortus str. 2308 A] gi|225615612|gb|EEH12661.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella ceti str. Cudo] gi|237787883|gb|EEP62099.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella abortus str. 2308 A] Length = 248 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + + +SP+A Sbjct: 33 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 90 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 91 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 148 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + T+ ARR L+ + G+ + +HGAL D++L + +Y+ + Sbjct: 149 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 203 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + K P + + R + Sbjct: 204 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 241 >gi|320668677|gb|EFX35482.1| ribonuclease T [Escherichia coli O157:H7 str. LSU-61] Length = 215 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDITLHFHVEPFVGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF +AHNA FD F+ A Sbjct: 73 EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|315182194|gb|ADT89107.1| DNA polymerase III, alpha subunit [Vibrio furnissii NCTC 11218] Length = 184 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 8/162 (4%) Query: 23 NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82 DR IEIGAV+L+D + TFQ + P G + S GIT+ L+ P + +E Sbjct: 2 GDRAIEIGAVKLVDG-QVAGTFQQLMNP-GFRVSGFIEGYTGITNTMLRTAPRCEEVMAE 59 Query: 83 FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR-NDL 141 F F + +AHNA FD F++AE RI P + ++ IARR ++ + L Sbjct: 60 FAHFIG--DTPLVAHNASFDKRFLDAEFDRIGVRY--PGQFACSMLIARRLIQNAPTHKL 115 Query: 142 NSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 L + I + H AL DS + + +++ M+ + Sbjct: 116 GDLVRFKQIENDG-TFHRALADSQMTASLWMLMVNDLRERGV 156 >gi|283833269|ref|ZP_06353010.1| ribonuclease T [Citrobacter youngae ATCC 29220] gi|291070906|gb|EFE09015.1| ribonuclease T [Citrobacter youngae ATCC 29220] Length = 215 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF E +AHNA FD F+ A Sbjct: 73 EALAFNGIDPNNPLRGAVSEYDALHAIFKMVRKGIKESGCNRAIMVAHNATFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLSL--GQTVLSKACLAAGMEFDGNQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|256059183|ref|ZP_05449390.1| DNA polymerase III, epsilon chain [Brucella neotomae 5K33] Length = 224 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 9/218 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 T+ ARR L+ + G+ + +HGAL D++L + +Y+ + Sbjct: 125 PFYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + K P + + R + Sbjct: 180 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 217 >gi|82543982|ref|YP_407929.1| ribonuclease T [Shigella boydii Sb227] gi|194434706|ref|ZP_03066959.1| ribonuclease T [Shigella dysenteriae 1012] gi|123559690|sp|Q321A7|RNT_SHIBS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|81245393|gb|ABB66101.1| RNase T [Shigella boydii Sb227] gi|194417044|gb|EDX33160.1| ribonuclease T [Shigella dysenteriae 1012] gi|320186326|gb|EFW61062.1| Ribonuclease T [Shigella flexneri CDC 796-83] gi|332093985|gb|EGI99038.1| ribonuclease T [Shigella dysenteriae 155-74] gi|332096070|gb|EGJ01075.1| ribonuclease T [Shigella boydii 3594-74] Length = 215 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF +AHNA FD F+ A Sbjct: 73 EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMIAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|219847899|ref|YP_002462332.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM 9485] gi|219542158|gb|ACL23896.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM 9485] Length = 280 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 12/189 (6%) Query: 6 KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + + FD+ETTGLD +N RI E+ + T + + P R+ P+A +++G Sbjct: 12 DLPLVFFDVETTGLDLQNGHRICELAMLRREHRQITGQ-INTLINPE-RELDPQASQVNG 69 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I E L+ P F+ + + Q A +AHN FD F+N EL R PL + Sbjct: 70 IRAEDLQSAPRFAELTVQVVQL--SQQAVRVAHNLPFDESFLNMELARAGYPPL-TGPAL 126 Query: 125 DTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 DTL +ARR L +L +G+ H A+ D L ++ +++ + ++ Sbjct: 127 DTLELARRLGIRRGSLSLGALATSFGLPTP---THRAMDDVLTLHALFDRLVAKLA--DY 181 Query: 184 GFKTNEDRF 192 G T D Sbjct: 182 GVTTLYDAL 190 >gi|81428523|ref|YP_395523.1| ATP-dependent helicase [Lactobacillus sakei subsp. sakei 23K] gi|78610165|emb|CAI55214.1| Putative ATP-dependent helicase, DinG family [Lactobacillus sakei subsp. sakei 23K] Length = 944 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + K DRII+ G + + +T + P R + L IT Sbjct: 7 YAVVDLETTGTNIKDGDRIIQFGCALVQNGKII-QTISQDVNP-LRDVPTKIQHLTHITA 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+ P F + + + ++AHN FD+ F+N EL R+ PLD + IDT+ Sbjct: 65 DQLELAPIFEDLAPTLVEILS--GTVFVAHNINFDLPFLNGELTRVGLQPLDLA-GIDTV 121 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A+ P L L + + I H + H A D+ + + +++K+ Sbjct: 122 ELAQIILPEAPSYRLQDLTQL--LEIEHDNPHQADSDALVTAKLFLKL 167 >gi|332971471|gb|EGK10424.1| ribonuclease T [Psychrobacter sp. 1501(2011)] Length = 268 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 20/191 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSP 57 R K +V D+ET G D+K D ++E+ + ++ L P G Sbjct: 57 RFRKFLPVVVDVETAGFDAKTDALLELACIPIIMDEQGKFIPGEALNAHLNPFEGANLEQ 116 Query: 58 EALKLHGIT--DEFLK-----DKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107 AL GI + K ++P+ IF E E + + HNA FD+ F+N Sbjct: 117 RALDFTGIDPNNPMRKAIAEEEQPALRRIFKELKAVRKENDCLKCILVGHNAHFDLSFLN 176 Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A ++R N +P ++DT++++ + L CK GI S H AL D+ Sbjct: 177 AAIERTNSKNHNPFHQFSVLDTVTLSALAF--GQTVLARACKAAGIEFSGTEAHSALYDT 234 Query: 165 HLLSDVYIKMM 175 ++++ ++ Sbjct: 235 QKTAELFCHIL 245 >gi|77361037|ref|YP_340612.1| ribonuclease T [Pseudoalteromonas haloplanktis TAC125] gi|76875948|emb|CAI87170.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Pseudoalteromonas haloplanktis TAC125] Length = 232 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA-VELLDYSK---TNRTFQVFLCPN-GRKNSPEALKLH 63 +V D+ET G + D ++EI V +D + T + P A++ + Sbjct: 18 PVVIDVETGGFNKDTDALLEIAVSVLKMDDEGLLSIDHTVHFHVEPFADANIEQAAIEFN 77 Query: 64 GITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQR--I 113 GI L+ E Q + +AHNA FD GF+NA ++R I Sbjct: 78 GIDPFSALRGAVPEEHAIKEICKVVRKAQKAAGCQRSVVVAHNAAFDHGFLNAAIERNNI 137 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT S+A + L C+ GI + H AL D+ +++Y Sbjct: 138 KRTPFHPFVSFDTTSLAGLAL--GQTVLAKACRAAGIEFDNSQAHSALYDTERTAELYCL 195 Query: 174 MMVGGSQIN 182 ++ Q+ Sbjct: 196 IVNRWQQLG 204 >gi|322380763|ref|ZP_08054869.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5] gi|321146767|gb|EFX41561.1| DNA polymerase III subunit epsilon [Helicobacter suis HS5] Length = 219 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 13/178 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 DIETTG +N +IEI A+ + + R+F + + + P+ +L Sbjct: 36 YCFVDIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLI--HCLEVPPKITEL 93 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 G++ + LK+ P ++ +F F Q+ ++AHNA FD FI+A ++ L ++ Sbjct: 94 TGLSTDDLKEAPPLEAVLQDFKLFI--QDHIFVAHNADFDFHFISACCAQVLDSALSNAK 151 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + TL++AR+ PS R+ L L G+ I H A D+ V+ + Q Sbjct: 152 -LCTLNLARKCIPSPRHGLQFLNTFLGLDIP--ISHRAYADALASLRVFEHCLRVLPQ 206 >gi|81428950|ref|YP_395950.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus sakei subsp. sakei 23K] gi|78610592|emb|CAI55643.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus sakei subsp. sakei 23K] Length = 178 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 9/168 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + D I V + + ++ F + P +S + ++HGI Sbjct: 1 MNFVAMDFETA--NGQRDSACSIALVVVRNDQIVDQ-FYTLIKPETYFSSRNS-QIHGIY 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ + P F ++ FF Q +AHNA FD+G + + LQ + P +DT Sbjct: 57 EDDVAQAPKFDQVWPHIAPFFTPQKLV-VAHNATFDIGVLRSTLQHYDI-PEPHYLALDT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L+ +RR +P + LN+LC I + + H AL DS + + IK Sbjct: 115 LTTSRRLYPQFKNHKLNTLCTNLEIPLENH--HNALADSIACAKILIK 160 >gi|256043519|ref|ZP_05446446.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str. Rev.1] Length = 224 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + T+ ARR L+ + G+ + +HGAL D++L + +Y+ + Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQDV 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + K P + + R + Sbjct: 180 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 217 >gi|116514018|ref|YP_812924.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093333|gb|ABJ58486.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 930 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + DRII+ G + D + +T+ + P+ RK L GI Sbjct: 10 FAVVDLETTGTRKEEGDRIIQFGCAIVKDG-EVVKTYSFMMNPH-RKIPLAVTNLTGIDQ 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + D+ F + + Q+ ++AHN FD F+N EL + L + +DT+ Sbjct: 68 KMVADQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEAL-TCKAVDTV 124 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +A+ P+ L L + I H + H A D++ + + +K++ + + Sbjct: 125 ELAKIAFPTLPSYKLRDLTA--SLEIKHANPHKADSDAYGTAVLLLKIIDKLASL 177 >gi|145634678|ref|ZP_01790387.1| ribonuclease T [Haemophilus influenzae PittAA] gi|145268223|gb|EDK08218.1| ribonuclease T [Haemophilus influenzae PittAA] gi|309972517|gb|ADO95718.1| Ribonuclease T [Haemophilus influenzae R2846] Length = 229 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R ++P P + DT S+A + L C I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMMVGGSQIN 182 + ++ M+ + Sbjct: 192 RTAKLFCYMVNHLKDLG 208 >gi|152988793|ref|YP_001347003.1| ribonuclease T [Pseudomonas aeruginosa PA7] gi|166200015|sp|A6V1R8|RNT_PSEA7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|150963951|gb|ABR85976.1| ribonuclease T [Pseudomonas aeruginosa PA7] Length = 224 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 18/197 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI A ++ + T+ + P G P AL+ Sbjct: 31 PVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFT 90 Query: 64 GI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI D L+ +E + + A + HN+ FD+GF+NA + R Sbjct: 91 GIKLDHPLRMAVQEEQALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGI 150 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ G+ +R H A D+ ++++ Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCG 208 Query: 174 MMVGGSQINFGFKTNED 190 ++ ++ G+ ++D Sbjct: 209 IVNRWKEMG-GWMDDDD 224 >gi|322373090|ref|ZP_08047626.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C150] gi|321278132|gb|EFX55201.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus sp. C150] Length = 828 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M KN + + D+E T S II++G V + + + F + P+ +K + Sbjct: 1 MSEKNTNKYAIVDLEAT-FASSMASIIQVGIVIMQNGQVIDE-FASDVNPH-QKLDDHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I + +D ++ ++AHN KFD ++ L + P Sbjct: 58 HLTGITDQQLAQAPDFSEIARKIFDLI--EDCIFVAHNVKFDANLLSEALFMEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P+ L+ L K + ++ H A+ D+ + +M + Sbjct: 116 --RVDTVELAQVFYPTLEHYKLSHLSKVLNLDLA--QAHTAIEDARATGQLLFHLMDKIA 171 Query: 180 QI 181 + Sbjct: 172 SL 173 >gi|262044634|ref|ZP_06017689.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038035|gb|EEW39251.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 215 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF E + +AHNA FD F Sbjct: 73 EALAFNGINPHDPQLGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTA 132 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 133 AERAGLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACIAAGMPFDGAQAHSALYDTEQT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AQLFCEIVNRWKRLG 205 >gi|70726060|ref|YP_252974.1| hypothetical protein SH1059 [Staphylococcus haemolyticus JCSC1435] gi|68446784|dbj|BAE04368.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 219 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D ET + K I +G V++++ +F + P S +++HGIT E Sbjct: 41 FIALDFETA--NGKRTSICSVGMVKVVNNEIV-ESFYTLVNPFDY-FSQTNIEVHGITPE 96 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D PSF +F F ++ +AHNA FD+ ++ L+++N + + Sbjct: 97 DVIDAPSFEYVFPYMMQFIDK--LPVVAHNAAFDMNVLHQSLKQLNIET-PSMIYFCSYQ 153 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+R + R L L K Y + H AL D+ + + +++ Sbjct: 154 LAKRTIDAYRYGLKHLMKHYKLDF--HGHHDALNDAKACAMITFRLL 198 >gi|332073070|gb|EGI83549.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Streptococcus pneumoniae GA17570] Length = 168 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 10/166 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +V D+E T SK +II++G V + D + + + P+ +L G+TD Sbjct: 7 RYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPH-EPLDAHIKELTGLTD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P FS + + +D ++ ++AHN +FD + L + +P +DT+ Sbjct: 64 QRLAQAPDFSQVARKIFDLV--EDGIFVAHNVQFDANLLAENLFFEGYELRNP--RVDTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +A+ P + L LC+ GI + H H AL D+ +++ + Sbjct: 120 ELAQVFFPELEKYSLPILCRELGIPLKH--AHTALSDAQATAELLL 163 >gi|120406462|ref|YP_956291.1| DNA polymerase III subunit epsilon [Mycobacterium vanbaalenii PYR-1] gi|119959280|gb|ABM16285.1| DNA polymerase III, epsilon subunit [Mycobacterium vanbaalenii PYR-1] Length = 333 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 32/247 (12%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ET+G RI+ + A+ L D ++ L P P +HG+T E Sbjct: 20 WAVVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAE 76 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L +P+F + + + + +AHN FD F+ AE + ++ + L ++ T+ Sbjct: 77 MLAGQPAFGDVVGDLIEVL--RGRTLVAHNVGFDYSFLTAEAEMVHAE-LPVDTVMCTVE 133 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ------- 180 +ARR N L +L +G+ + H AL D+ +L+ + ++V + Sbjct: 134 LARRLDLGLDNLRLETLAAHWGV--TQMKPHDALDDAMVLAQILKPVLVRAQERRKWLPV 191 Query: 181 --------INFGFKTNEDRFFKEEKKTVP----NISLLKRDKPLF----TRITKEELDEH 224 N +E R K +P N + +PL ++ E H Sbjct: 192 HPVSRRTWPNGRITHDEFRPLKALAARMPCAYANPGVFVAGRPLVQGMRVALSAEVGHTH 251 Query: 225 DKTIQTL 231 ++ ++ + Sbjct: 252 EELVERI 258 >gi|288905684|ref|YP_003430906.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus UCN34] gi|288732410|emb|CBI13982.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus UCN34] Length = 834 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 87/182 (47%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + + D+E TG + II++G V +++ + +T+Q + P+ S + Sbjct: 8 MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIV-IIENDEIVKTYQTDVNPHEA-LSEHII 64 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + E + ++ ++AHN KFD + +L + P Sbjct: 65 NLTGITDEQLAKAPDFSQVAQEVFSLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 122 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P+ + L + + + H A+ D++ + +++K+ Sbjct: 123 --RVDTVELAQVFYPTFEKYSLGN--LADALALDLADAHTAISDAYATAQLFLKLKAKMK 178 Query: 180 QI 181 + Sbjct: 179 SL 180 >gi|152970543|ref|YP_001335652.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330015632|ref|ZP_08308213.1| ribonuclease T [Klebsiella sp. MS 92-3] gi|166228567|sp|A6TA01|RNT_KLEP7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|150955392|gb|ABR77422.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328531231|gb|EGF58076.1| ribonuclease T [Klebsiella sp. MS 92-3] Length = 215 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEHGWLMPDETLHFHVEPFEGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF E + +AHNA FD F Sbjct: 73 EALAFNGINPHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTA 132 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 133 AERAGLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACIAAGMPFDGAQAHSALYDTEQT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AQLFCEIVNRWKRLG 205 >gi|325953822|ref|YP_004237482.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922] gi|323436440|gb|ADX66904.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922] Length = 253 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 10/175 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 FD+ETTG + DRI+EI V+ + K +T++ + P PE +HGI D Sbjct: 7 ICFFDLETTGTNIAKDRIVEIAIVKAYTNGEKEIKTWR--VNPE-MPIPPETSLIHGIYD 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRIIDT 126 E +KD P+F I + + + + N +FD+ + E R D L+ R ID Sbjct: 64 EDVKDAPTFREIAPQIVELIKDSDLAGFNSN-RFDIPLLAEEFLRNGIDFDLEKHRPIDV 122 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 I + P +L + K Y + H A D+ +V + + ++ Sbjct: 123 QVIFHKMEP---RNLAAAYKFY-CDKDLENAHSAEADTLATYEVLMAQIEKYEEL 173 >gi|314936410|ref|ZP_07843757.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis subsp. hominis C80] gi|313655029|gb|EFS18774.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis subsp. hominis C80] Length = 905 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG ++D II+IG + D + T+ + + P L I + Sbjct: 6 FAVVDLETTGNQLEHDEIIQIGITFVRDNKISG-TYHSMIR-TDLEIPPFIQALTSIEET 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I + ++ ++ ++AHN FD+ FI ++ N P +++DTL Sbjct: 64 MLEQAPYFHEIADDIYEQL--KDCIFVAHNVDFDLNFIKKAFEKSNIH-FKPKKVLDTLE 120 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + P+ + L+ L + I +++ H A D+ + + IK Sbjct: 121 LFKIAFPTEKSYQLSELANAHNIPLTN--AHRADEDATTTAYLMIK 164 >gi|148827473|ref|YP_001292226.1| ribonuclease T [Haemophilus influenzae PittGG] gi|166228566|sp|A5UGD7|RNT_HAEIG RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|148718715|gb|ABQ99842.1| ribonuclease T [Haemophilus influenzae PittGG] Length = 229 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELNAITGLFQMVRRGQKDADCQRSIIVAHNAAFDQSFVM 133 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R ++P P + DT S+A + L C+ I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACQAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMMVGGSQIN 182 + ++ M+ + Sbjct: 192 RTAKLFCYMVNHLKDLG 208 >gi|62317520|ref|YP_223373.1| exonuclease [Brucella abortus bv. 1 str. 9-941] gi|83269503|ref|YP_418794.1| DNA polymerase III subunit epsilon:exonuclease [Brucella melitensis biovar Abortus 2308] gi|148557905|ref|YP_001257609.1| putative exonuclease [Brucella ovis ATCC 25840] gi|189022776|ref|YP_001932517.1| DNA polymerase III, epsilon subunit [Brucella abortus S19] gi|225686408|ref|YP_002734380.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella melitensis ATCC 23457] gi|254691019|ref|ZP_05154273.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 6 str. 870] gi|254695674|ref|ZP_05157502.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 3 str. Tulya] gi|254698803|ref|ZP_05160631.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 2 str. 86/8/59] gi|254705882|ref|ZP_05167710.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis M163/99/10] gi|254711110|ref|ZP_05172921.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis B2/94] gi|254712430|ref|ZP_05174241.1| DNA polymerase III, epsilon chain [Brucella ceti M644/93/1] gi|254715502|ref|ZP_05177313.1| DNA polymerase III, epsilon chain [Brucella ceti M13/05/1] gi|254732250|ref|ZP_05190828.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 4 str. 292] gi|256015402|ref|YP_003105411.1| exonuclease, putative [Brucella microti CCM 4915] gi|256029491|ref|ZP_05443105.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis M292/94/1] gi|256111454|ref|ZP_05452474.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 3 str. Ether] gi|256157686|ref|ZP_05455604.1| DNA polymerase III, epsilon chain [Brucella ceti M490/95/1] gi|256253341|ref|ZP_05458877.1| DNA polymerase III, epsilon chain [Brucella ceti B1/94] gi|256256204|ref|ZP_05461740.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 9 str. C68] gi|256262453|ref|ZP_05464985.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|260167417|ref|ZP_05754228.1| DNA polymerase III, epsilon chain [Brucella sp. F5/99] gi|260544758|ref|ZP_05820579.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260564713|ref|ZP_05835198.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|261756828|ref|ZP_06000537.1| DNA polymerase III [Brucella sp. F5/99] gi|62197713|gb|AAX76012.1| exonuclease, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82939777|emb|CAJ12783.1| DNA polymerase III, epsilon subunit:Exonuclease [Brucella melitensis biovar Abortus 2308] gi|148369190|gb|ABQ62062.1| putative exonuclease [Brucella ovis ATCC 25840] gi|189021350|gb|ACD74071.1| DNA polymerase III, epsilon subunit [Brucella abortus S19] gi|225642513|gb|ACO02426.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Brucella melitensis ATCC 23457] gi|255998062|gb|ACU49749.1| exonuclease, putative [Brucella microti CCM 4915] gi|260098029|gb|EEW81903.1| DNA polymerase III [Brucella abortus NCTC 8038] gi|260152356|gb|EEW87449.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M] gi|261736812|gb|EEY24808.1| DNA polymerase III [Brucella sp. F5/99] gi|263092188|gb|EEZ16485.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9] gi|326410781|gb|ADZ67845.1| DNA polymerase III, epsilon subunit [Brucella melitensis M28] Length = 224 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 9/218 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + T+ ARR L+ + G+ + +HGAL D++L + +Y+ + Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + K P + + R + Sbjct: 180 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 217 >gi|145631430|ref|ZP_01787200.1| ribonuclease T [Haemophilus influenzae R3021] gi|145632574|ref|ZP_01788308.1| ribonuclease T [Haemophilus influenzae 3655] gi|145640270|ref|ZP_01795854.1| ribonuclease T [Haemophilus influenzae R3021] gi|144982967|gb|EDJ90476.1| ribonuclease T [Haemophilus influenzae R3021] gi|144986769|gb|EDJ93321.1| ribonuclease T [Haemophilus influenzae 3655] gi|145274856|gb|EDK14718.1| ribonuclease T [Haemophilus influenzae 22.4-21] Length = 229 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKN 55 KN+ R ++ D+ET G D+K D ++E+ A+ L Y ++ + P G Sbjct: 14 KNRFRGYFPVIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANI 73 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 +PE+LK +GI L+ S + + + Q + +AHNA FD F+ Sbjct: 74 NPESLKFNGIDIHNPLRGAVSELDAITGLFQMVRRGQKDADCQRSIIVAHNATFDQSFVM 133 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A +R ++P P + DT S+A + L C I + H AL D+ Sbjct: 134 AAAERTGVKRNPFHPFGMFDTASLAGLMF--GQTVLVKACLAAKIPFDGKQAHSALYDTE 191 Query: 166 LLSDVYIKMMVGGSQIN 182 + ++ M+ + Sbjct: 192 RTAKLFCYMVNHLKDLG 208 >gi|303233442|ref|ZP_07320110.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Atopobium vaginae PB189-T1-4] gi|302480450|gb|EFL43542.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Atopobium vaginae PB189-T1-4] Length = 539 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 70/177 (39%), Gaps = 12/177 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL +D + +I AV+ T TF F+ P + KL I + Sbjct: 84 VFLDTETTGLSFADDSLTQIAAVKRRADG-TFDTFCTFVHPP-KPIPAHISKLTNIYNAD 141 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + P F A +AHNA FD F+ LQ S ID+L++ Sbjct: 142 VAAAPKPKEAVLALAQFVG--GAPIVAHNAAFDKTFVEGVLQH----QTVSSTWIDSLAL 195 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 ++ PS + L L +G R H A D L+DV+ MM Q+ Sbjct: 196 SKIAFPSFNTHKLEDLAVLFGCA---RVTHRADDDCKALADVWHYMMRALCQLPESL 249 >gi|306831779|ref|ZP_07464935.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425977|gb|EFM29093.1| DnaQ family exonuclease/DinG family helicase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 827 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 87/182 (47%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + + D+E TG + II++G V +++ + +T+Q + P+ S + Sbjct: 1 MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIV-IIENDEIVKTYQTDVNPHEA-LSEHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + E + ++ ++AHN KFD + +L + P Sbjct: 58 NLTGITDEQLAKAPDFSQVAQEVFSLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P+ + L + + + H A+ D++ + +++K+ Sbjct: 116 --RVDTVELAQVFYPTFEKYSLGN--LADALALDLADAHTAISDAYATAQLFLKLKAKMK 171 Query: 180 QI 181 + Sbjct: 172 SL 173 >gi|300812428|ref|ZP_07092858.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496595|gb|EFK31687.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 930 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + DRII+ G + D + +T+ + P+ RK L GI Sbjct: 10 FAVVDLETTGTRKEEGDRIIQFGCAIVKDG-EVVKTYSFMMNPH-RKIPLAVTNLTGIDQ 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + F + + Q+ ++AHN FD F+N EL + L + +DT+ Sbjct: 68 KMVAGQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEAL-TCKAVDTV 124 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +A+ P+ L L + I H + H A D++ + + +K++ + + Sbjct: 125 ELAKIAFPTLPSYKLRDLTA--SLEIKHANPHKADSDAYGTAVLLLKIIDKLASL 177 >gi|228476066|ref|ZP_04060774.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis SK119] gi|228269889|gb|EEK11369.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus hominis SK119] Length = 905 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ETTG ++D II+IG + D + T+ + + P L I + Sbjct: 6 FAVVDLETTGNQLEHDEIIQIGITFVRDNKISG-TYHSMIR-TDLEIPPFIQALTSIEET 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ P F I + ++ ++ ++AHN FD+ FI ++ N P +++DTL Sbjct: 64 MLEQAPYFHEIADDIYEQL--KDCIFVAHNVDFDLNFIKKAFEKSNIH-FKPKKVLDTLE 120 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + + P+ + L+ L + I +++ H A D+ + + IK Sbjct: 121 LFKIAFPTEKSYQLSELANAHNIPLTN--AHRADEDATTTAYLMIK 164 >gi|257792837|ref|YP_003183443.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243] gi|257476734|gb|ACV57054.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243] Length = 966 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 11/173 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG +D + +I A ++ + F F+ P G+ + L I D Sbjct: 11 VVLDTETTGFSFNHDELTQIAAAR-MEQGEIVEWFITFVNP-GKPIPEDVAHLTDIHDRD 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P + ++ +F +A+ +AHNA+FD F + PL + ID+L + Sbjct: 69 VADAPLPADALAKLVEFIG--DAKVVAHNAEFDRTFTTRH---PSGYPLLENTWIDSLDL 123 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 AR P + + L L + +G +S H A D ++ ++ G + + Sbjct: 124 ARIALPRMKSHRLLDLVRAFGAPLS---THRADADVEATCAIFRILLAGVAAM 173 >gi|313679706|ref|YP_004057445.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977] gi|313152421|gb|ADR36272.1| DNA-directed DNA polymerase [Oceanithermus profundus DSM 14977] Length = 252 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 8/166 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + IIEI + + F + P G P +L GI+ Sbjct: 79 VVLDLETTGLSPSENEIIEIALMRVEPGR--VERFARLVNP-GSPIPPFITRLTGISSAD 135 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P + E + + A + NA FD+GF+ R+ + +IDT+ Sbjct: 136 VADAPDVYTALEEALPYL--EGAVLVIQNAPFDLGFLRPRACRLGVKI--HNEVIDTVQW 191 Query: 130 A-RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 A R R L+ L + + ++I ++H AL D V +M Sbjct: 192 ARRALPRMRRRGLDHLIRAFEVSIETGARHRALGDVEATWTVAREM 237 >gi|224825206|ref|ZP_03698312.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224602877|gb|EEG09054.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 212 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 7/170 (4%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTGL R EI V L + R FQ + G + P+ +L GI+ Sbjct: 12 RVAVIDFETTGLSPGIGCRATEIAVVLLENGRVAGR-FQSLMN-AGVRVPPDIERLTGIS 69 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + LK P ++ E +F + +AHNA FD F + EL + + Sbjct: 70 NAMLKAAPPADAVMREAAEFVG--DTPLVAHNAAFDRKFWDYELGQFGRTRRQDFAC-TL 126 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 L R + + L +L + G+ + H AL D+ + +++ + Sbjct: 127 LLARRLLPAAPNHKLGTLTRWAGLP-ATGQAHRALADAEMAANLMAHLTR 175 >gi|197285252|ref|YP_002151124.1| ribonuclease T [Proteus mirabilis HI4320] gi|227355678|ref|ZP_03840072.1| exoribonuclease T [Proteus mirabilis ATCC 29906] gi|194682739|emb|CAR42945.1| ribonuclease T [Proteus mirabilis HI4320] gi|227164285|gb|EEI49178.1| exoribonuclease T [Proteus mirabilis ATCC 29906] Length = 212 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 20/196 (10%) Query: 5 NKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNS 56 N+ R +V D+ET G ++K D ++EI A+ L + K + T + P G Sbjct: 12 NRFRGYYPVVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVDPFEGANLE 71 Query: 57 PEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINA 108 P AL+ GI L+ S + + A +AHNA FD F+ A Sbjct: 72 PAALEFTGIDPTNPLRGAVSEYEALHAIFKMVRKGMKDANCNRAIIVAHNANFDHSFVMA 131 Query: 109 ELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 +R ++P P DT +++ + L C GI + HGAL D++ Sbjct: 132 AAERAGLKRNPFHPFATFDTAALSGLVL--GQTILAKACITAGIPFDSKLAHGALYDTNR 189 Query: 167 LSDVYIKMMVGGSQIN 182 S ++ +++ ++ Sbjct: 190 TSLLFCELVNRWKKLG 205 >gi|332290155|ref|YP_004421007.1| ribonuclease T [Gallibacterium anatis UMN179] gi|330433051|gb|AEC18110.1| ribonuclease T [Gallibacterium anatis UMN179] Length = 224 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 86/200 (43%), Gaps = 20/200 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLC-PNGR 53 + K++ R ++ D+ET+GL+++ D ++E+ A+ + + + + G Sbjct: 22 LLKHRFRGYYPVIVDVETSGLNAQTDGLLELAAITVKMDEQGLLHPDEKCHFQIKLFEGA 81 Query: 54 KNSPEALKLHGITDEF-LKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGF 105 P +LK++GI + ++ + + F+ + + +AHNA FD F Sbjct: 82 NVDPNSLKINGINPDDPQREAVDELTALTGFFQMVRRGQKAAECKRSILVAHNAMFDYNF 141 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A + R ++P P DT ++A + L + C GI H AL D Sbjct: 142 LMAAINRTGIKRNPFHPFSTFDTATLAGFMF--GQTVLRTACDNAGIPFEPSKAHSALYD 199 Query: 164 SHLLSDVYIKMMVGGSQINF 183 + ++++ M+ Q N Sbjct: 200 TEKTAELFCLMVNKLKQANI 219 >gi|157364228|ref|YP_001470995.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO] gi|157314832|gb|ABV33931.1| DNA polymerase III, epsilon subunit [Thermotoga lettingae TMO] Length = 188 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 12/190 (6%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEA 59 + N+ D ETTG+D DRI+E+ V + R+ + + P R Sbjct: 1 MILNESLFCAMDTETTGIDPMNGDRIVEVAIVPVYKGRILYRSIYHTLVNPKIR-IPATI 59 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 K+H IT+E +++ P+ +F + F + I H A+FD+ FI+ + I P Sbjct: 60 EKIHRITNEDIENAPTIEQVFGQMRSFMRR--SIMIFHRAEFDLTFIDISAKEIGIFP-P 116 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VG 177 IDT I+ + L+ L +R+G + H AL D+ + +++KM + Sbjct: 117 SIDYIDTREISEIIF-GEKKALSWLAERFGFEKPN---HRALTDAITTAKLFLKMTRKLA 172 Query: 178 GSQINFGFKT 187 GSQI T Sbjct: 173 GSQIEELVHT 182 >gi|332307350|ref|YP_004435201.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174679|gb|AEE23933.1| ribonuclease T [Glaciecola agarilytica 4H-3-7+YE-5] Length = 211 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 20/192 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53 + K++ R ++ D+ET G +++ D ++E+ A+ Y ++TF + P G Sbjct: 7 LLKDRFRGYFPVIVDVETAGFNAQTDALLEVAAITTKMDADGYLTPDKTFHYHVVPFEGA 66 Query: 54 KNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 AL+ +GI L+ + + + + Q + +AHNA FD+GF Sbjct: 67 NLEKAALEFNGIDPWCALRGALDETEVMKDLCKQIRKEQKDADCQRSVMVAHNAAFDLGF 126 Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 INA ++R I + P P DT ++A + L C+ I+ H AL D Sbjct: 127 INAAIERSKIKRTPFHPFVSFDTTTLAGLAL--GQTVLVKACQAANISFDQSEAHSALYD 184 Query: 164 SHLLSDVYIKMM 175 + +++Y ++ Sbjct: 185 TQKTAELYCYIV 196 >gi|217970527|ref|YP_002355761.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|217507854|gb|ACK54865.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 203 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 7/160 (4%) Query: 10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTGL + DR EI AV + D +R +Q + G + L GIT+ Sbjct: 5 AVIDFETTGLSPAQGDRATEIAAVIVEDGRVVDR-YQSLMN-AGVRIPAYIEALTGITNA 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P + + DF + +AHNA FD F +AEL RI ++ L Sbjct: 63 MVRSAPLAGEVMRDVSDFVG--DMPIVAHNASFDAKFWDAELGRIQRNRKQDFVCS-LLL 119 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 R + + L L + + ++ R H AL D+ + + Sbjct: 120 SRRLLPLAPSHKLGVLVEYANLPVAGR-YHRALADAEMAA 158 >gi|119775228|ref|YP_927968.1| ribonuclease T [Shewanella amazonensis SB2B] gi|119767728|gb|ABM00299.1| RNAse T [Shewanella amazonensis SB2B] Length = 258 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 85/220 (38%), Gaps = 25/220 (11%) Query: 5 NKMRK-------IVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NG 52 NK++ +V D+ET G +++ D ++EI + + D ++T + P G Sbjct: 28 NKLKYRFRGYYPVVIDVETAGFNAQTDALLEIAVTLLTMDDNGMLALDKTLHFHIEPFEG 87 Query: 53 RKNSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVG 104 P AL +GI L+ S E + + A +AHNA FD G Sbjct: 88 ANLEPAALAFNGIDPSNPLRGAVSEKEAMLEIFKAVRKGMKAADCHRAVIVAHNAAFDHG 147 Query: 105 FINAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ + R + P P DT ++ L CK GI ++ H AL Sbjct: 148 FVTKAIDRSGVKRSPFHPFATFDTACLSGLAL--GHTVLAQACKIAGIPFDNKEAHSALY 205 Query: 163 DSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPN 202 D+ ++++ ++ + G+ + + T + Sbjct: 206 DTERTAELFCYIVNRWKSLG-GWPLLGAEALDDAENTAAD 244 >gi|325686250|gb|EGD28293.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 930 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + DRII+ G + D + +T+ + P+ RK L GI Sbjct: 10 FAVVDLETTGTRKEEGDRIIQFGCAIVKDG-EVVKTYSFMMNPH-RKIPLAVTNLTGIDQ 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + F + + Q+ ++AHN FD F+N EL + L + +DT+ Sbjct: 68 KMVAGQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEAL-TCKAVDTV 124 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +A+ P+ L L + I H + H A D++ + + +K++ + + Sbjct: 125 ELAKIAFPTLPSYKLRDLTA--SLEIKHANPHKADSDAYGTAVLLLKIIDKLASL 177 >gi|238919999|ref|YP_002933514.1| ribonuclease T [Edwardsiella ictaluri 93-146] gi|238869568|gb|ACR69279.1| ribonuclease T, putative [Edwardsiella ictaluri 93-146] Length = 221 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 17/196 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNS 56 R +V D+ET G D+ + ++EI AV L + +T++ + P G + S Sbjct: 12 TRFRGFYPVVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHIDPFEGAELS 71 Query: 57 PEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINA 108 PEAL +GI + + + +IF +Q A +AHNA FD F+ A Sbjct: 72 PEALAFNGIDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMA 131 Query: 109 ELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 R ++P P DT +++ + L C I H AL D+ Sbjct: 132 AAARAGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACISAQIPFDSAQAHSALYDTQQ 189 Query: 167 LSDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 190 TATLFCELVNRWKRLG 205 >gi|114562633|ref|YP_750146.1| ribonuclease T [Shewanella frigidimarina NCIMB 400] gi|122300177|sp|Q084K7|RNT_SHEFN RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|114333926|gb|ABI71308.1| RNAse T [Shewanella frigidimarina NCIMB 400] Length = 221 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL---DYSKT-NRTFQVFLCP-NGRKN 55 K++ R +V D+ET G ++ D ++EI L D +RT + P G Sbjct: 11 KHRFRGYFPVVIDVETAGFNANTDALLEIAVSLLKMNSDGVIVLDRTLHFNIEPFEGANL 70 Query: 56 SPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107 P AL +GI + +K +F IF E + +AHNA FD+GF+N Sbjct: 71 EPAALAFNGIDPTNPLRGAVDEKVAFLEIFKEVKKAQKAADCHRSIIVAHNAAFDLGFVN 130 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 ++R + + P P DT ++A L CK GI ++ H AL D+ Sbjct: 131 KAIERNGLKRSPFHPFASFDTATLAGLAI--GHTVLAKACKMAGIDFDNKEAHSALYDTE 188 Query: 166 LLSDVYIKMMVGGSQIN 182 ++++ ++ + Sbjct: 189 RTAELFCLIVNRWKALG 205 >gi|33151799|ref|NP_873152.1| ribonuclease T [Haemophilus ducreyi 35000HP] gi|54036330|sp|Q7VND8|RNT_HAEDU RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|33148020|gb|AAP95541.1| ribonuclease T [Haemophilus ducreyi 35000HP] Length = 214 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGR 53 + K++ R ++ D+ET GL++K D ++E+ A+ + Y ++ + P Sbjct: 10 LLKHRFRGYLPVIIDVETAGLNAKTDALLELAAITVKMDQQGYLVPDQKCHFHIQPFENA 69 Query: 54 KNSPEALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGF 105 + ++LK +GI + + + +F EQ +AHNA FD F Sbjct: 70 NINADSLKFNGIDIHNPLRGAVAEAIAIPEMFKMVRRAIKEQGCQRAVIVAHNATFDQAF 129 Query: 106 INAELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A ++RIN +DP P + DT S+A + + L C+ I + H AL D Sbjct: 130 LQAAVKRINAKRDPFHPFAMFDTASLAGLMY--GQTVLVKACQIANIAFDGKQAHSALYD 187 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ M+ + Sbjct: 188 TEKTTELFCAMVNRLKDLG 206 >gi|222824026|ref|YP_002575600.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100] gi|222539248|gb|ACM64349.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100] Length = 254 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 13/184 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIE+TG K+ +I+EIGAV++ +Y + +R F+ F+ +L GI+ + Sbjct: 72 FCVVDIESTGG-IKSGQILEIGAVKIQNYKEIDR-FESFVKVE--SIPENITELTGISLD 127 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ PS ++ + F F +++ ++AHN +FD FI+ + + L +R + T+ Sbjct: 128 MVENAPSLKTVLNNFKLFL--KDSIFVAHNVRFDYHFISKAMYENDFGVLL-NRRLCTID 184 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +A++ S + L++L + I H H AL D+ S++ + +I F K Sbjct: 185 LAKKCIESPKYGLDALKEFLCIESKH---HRALSDALAASEILKYCL---KKIPFYIKNT 238 Query: 189 EDRF 192 E+ Sbjct: 239 EELL 242 >gi|289423924|ref|ZP_06425717.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] gi|289155701|gb|EFD04373.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L] Length = 188 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 14/166 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V DIET+GL+ + + I+E+GAV + D ++ + P + S EA K++G+T Sbjct: 27 YTVIDIETSGLNPEKNEILELGAVRVRDN-IVVAEYEQLIRP-RKSISKEATKVNGLTKR 84 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D+P + +F DF + I HN +FD+ FI +L ++ IDTL Sbjct: 85 MLIDEPFVEDVIWDFKDFLGKD--VLIGHNIEFDLEFIRNQL-------PIRNKYIDTLP 135 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +AR+ R+ L +C Y I + H ++ D + Y KM Sbjct: 136 LARKLLKIKRHRLIDICHHYKIPEPN---HRSISDCNATHLCYQKM 178 >gi|260101291|ref|ZP_05751528.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075] gi|260084876|gb|EEW68996.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075] Length = 929 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 9/178 (5%) Query: 6 KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K V D+ETTG K II+ G ++ K +T+ + P+ R+ + L G Sbjct: 7 KDTFAVVDLETTGTQREKGHHIIQFGC-AIIKNMKVVKTYSFMINPH-REIPQSVVNLTG 64 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I +E ++ K FS + + + ++AHN FD+ F+N EL + + L ++ I Sbjct: 65 IHNEDVQGKDDFSVYAPKIIEIL--KGTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 DT+ +A+ P+ L+ L + I H + H A D++ + + IK++ + Sbjct: 122 DTVELAKIAFPTLPSYKLSDLTAQLKIK--HLNPHKADSDAYGTAVLLIKIIHKLESL 177 >gi|255523029|ref|ZP_05390001.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans P7] gi|255513144|gb|EET89412.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans P7] Length = 862 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 8/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K IVFD+E+TG+D D II+I A+++ + F+ FL N K+ + + Sbjct: 491 EFQKDNIIVFDVESTGVDVTEDEIIQIAAIKVNKNGQVTEKFERFLKNN--KSVKNSEHV 548 Query: 63 HGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +DEFL K+ +++ EF F +++ + HN ++D+ + +ELQR Sbjct: 549 HGFSDEFLKKNGEDKNTVLKEFVKF--SEDSVIVGHNVQYDINILTSELQRAGLGEPKFK 606 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL I RR HP+ R + L +L + ++ H A+ D D+ ++ + Sbjct: 607 AFYDTLDIYRRFHPNLRNHKLETLSHIF--ETENKPSHDAMDDIQATKDILVRAI 659 >gi|120436251|ref|YP_861937.1| exonuclease family protein [Gramella forsetii KT0803] gi|117578401|emb|CAL66870.1| exonuclease family protein [Gramella forsetii KT0803] Length = 223 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 15/179 (8%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63 + +R IVFD ETTG + DR++ IGAV + + S + F+VFL +K +PE +K+H Sbjct: 35 SDIRFIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFL--EQKKFNPETVKIH 92 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI +K S +F + QN+ +AH+A FD+ IN L R L +++ Sbjct: 93 GIIQNEKFEKLSELEALKKFLSYI--QNSVLVAHHAGFDMKMINKALSRNGLPKL-KNKV 149 Query: 124 IDTLSIARRKHPSSR-------NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT + ++ ++ L+ + + Y I + R H A D+++ + +++K++ Sbjct: 150 LDTSILYKKTRIATNFIDRDKIYSLDEIAEAYNIDLIDR--HTASGDAYITALIFMKLL 206 >gi|110805628|ref|YP_689148.1| ribonuclease T [Shigella flexneri 5 str. 8401] gi|123147001|sp|Q0T4C2|RNT_SHIF8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|110615176|gb|ABF03843.1| RNase T [Shigella flexneri 5 str. 8401] Length = 215 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 22/202 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + I +AHNA FD F+ A Sbjct: 73 EALAFNGIDPNDPDRGAVSEYEALHEICKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190 Query: 168 SDVYIKMM-----VGGSQINFG 184 + ++ +++ +GG + G Sbjct: 191 AVLFCEIVNRWKRLGGWPLPAG 212 >gi|145221884|ref|YP_001132562.1| DNA polymerase III subunit epsilon [Mycobacterium gilvum PYR-GCK] gi|145214370|gb|ABP43774.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK] Length = 345 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 25/213 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ET+G RI+ + A+ L D ++ L P P +HG+T E Sbjct: 32 WAVVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG---VDPGPTHVHGLTAE 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+ +P+F + + + + +AHN FD F++AE + + + L ++ T+ Sbjct: 89 MLEGQPTFGDVVGDLCEVL--RGRTLVAHNVGFDYSFLSAEAELVGAE-LPIDTVMCTVE 145 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR N L +L +G+ + H AL D+ +L+ + ++V Sbjct: 146 LARRLDLGLENLRLETLAAHWGV--TQMRPHDALDDAMVLAQILKPVLVRA--------- 194 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 +E +K +P + +R P R+T +E Sbjct: 195 ------QERRKWLPVHPVGRRTWP-NGRVTHDE 220 >gi|322378997|ref|ZP_08053400.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1] gi|321148489|gb|EFX42986.1| DNA polymerase III subunit epsilon (DnaQ) [Helicobacter suis HS1] Length = 219 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 13/178 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAV------ELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 DIETTG +N +IEI A+ + + R+F + + + P+ +L Sbjct: 36 YCFVDIETTGSKPENSSMIEIAALLYEPPKNPMHKGQIIRSFSSLI--HCLEVPPKITEL 93 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 G++ + LK+ P ++ +F F Q+ ++AHNA FD FI+A ++ L ++ Sbjct: 94 TGLSTDDLKEAPPLEAVLQDFKLFI--QDHIFVAHNADFDFHFISACCVQVLDSALSNAK 151 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + TL++AR+ PS R+ L L G+ I H A D+ V+ + Q Sbjct: 152 -LCTLNLARKCIPSPRHGLQFLNTFLGLDIP--ISHRAYADALASLRVFEHCLRVLPQ 206 >gi|262204572|ref|YP_003275780.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis DSM 43247] gi|262087919|gb|ACY23887.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis DSM 43247] Length = 590 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 10/210 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTG +++ DR++ + + L + + L P P + +H +T + Sbjct: 10 WVLVDVETTGTNARRDRVLSLATMTLDYDGRVEDEYATLLNPGC---DPGPVHIHNLTRD 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+F S + +AHNA FD GF+ E +R+ L + T++ Sbjct: 67 RLHGAPTFDVTMSPLQQMLAGR--TMVAHNATFDHGFLVEEARRLG-ATLPIDHRLCTVT 123 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR N L +L +GI R+ H A D L++V+ + + + Sbjct: 124 LARRLQLDVPNVKLGTLATYWGIR--QRAAHDARDDVRTLAEVFRRSLDLAETLGLRLPV 181 Query: 188 NEDRFFKEE-KKTVPNISLLKRDKPLFTRI 216 V + RD F Sbjct: 182 VACGVNSRAFPDKVTRVPCPWRDPGRFDPA 211 >gi|317492115|ref|ZP_07950545.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919820|gb|EFV41149.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA] Length = 218 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPN-GRKNSP 57 R +V D+ET G D+ + ++EI AV L + + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFDANTNALLEIAAVTLRMTDDGWLEPDETLHFHVEPFVGSVLVP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI E + + + +IF E + +AHNA FD F+ A Sbjct: 73 EALAFNGIDPENPLRGAVSEYEALHAIFKAVRKGIKEHDCNRAVIVAHNAHFDHSFVMAA 132 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R+ ++P P DT +++ + L C I H AL D+ Sbjct: 133 AERVGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACIAANIPFDSTQAHSALYDTEQT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 ATLFCELVNRWKRMG 205 >gi|322381856|ref|ZP_08055810.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit epsilon-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154244|gb|EFX46566.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit epsilon-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 957 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 9/175 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + M+ V D ETT S D II++G V + ++ T+R + + P G + Sbjct: 1 METTGMKFAVLDFETT-GTSTTDTIIQVGLVIIDEFDITDR-YTSLVNP-GVRIPSSITS 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ PS + ++ + + + +AH+A FD F+ L + P Sbjct: 58 LTGITDEMVENAPSVEKVMADLYPLLS--DCVLVAHHASFDHAFLQRSLTKAGYPPF-TG 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R++DT+ R PS L +C +GI H + H A D+ + ++++I++M Sbjct: 115 RVLDTIDALRVAFPSLGSFQLGHVCSLFGIE--HENPHQANCDAQVTAELWIRIM 167 >gi|15598724|ref|NP_252218.1| ribonuclease T [Pseudomonas aeruginosa PAO1] gi|107103040|ref|ZP_01366958.1| hypothetical protein PaerPA_01004109 [Pseudomonas aeruginosa PACS2] gi|116051527|ref|YP_789637.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14] gi|218890245|ref|YP_002439109.1| ribonuclease T [Pseudomonas aeruginosa LESB58] gi|254242188|ref|ZP_04935510.1| ribonuclease T [Pseudomonas aeruginosa 2192] gi|296387969|ref|ZP_06877444.1| ribonuclease T [Pseudomonas aeruginosa PAb1] gi|313108873|ref|ZP_07794856.1| ribonuclease T [Pseudomonas aeruginosa 39016] gi|14548235|sp|Q9HY82|RNT_PSEAE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|122260667|sp|Q02QZ9|RNT_PSEAB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|9949677|gb|AAG06916.1|AE004773_5 ribonuclease T [Pseudomonas aeruginosa PAO1] gi|115586748|gb|ABJ12763.1| ribonuclease T [Pseudomonas aeruginosa UCBPP-PA14] gi|126195566|gb|EAZ59629.1| ribonuclease T [Pseudomonas aeruginosa 2192] gi|218770468|emb|CAW26233.1| ribonuclease T [Pseudomonas aeruginosa LESB58] gi|310881358|gb|EFQ39952.1| ribonuclease T [Pseudomonas aeruginosa 39016] Length = 224 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 18/197 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI A ++ + T+ + P G P AL+ Sbjct: 31 PVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFT 90 Query: 64 GI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI D L+ + +E + + A + HN+ FD+GF+NA + R Sbjct: 91 GIKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGI 150 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ G+ +R H A D+ ++++ Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCG 208 Query: 174 MMVGGSQINFGFKTNED 190 ++ ++ G+ ++D Sbjct: 209 IVNRWKEMG-GWMDDDD 224 >gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054] Length = 617 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 11/205 (5%) Query: 12 FDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLK 71 D+ET+GL ++ DR++ I + + L P P + +HG+T E L+ Sbjct: 22 VDVETSGLVARRDRVLSIAVLTFAPDGTQTGEYTTLLDPGC---DPGPVHVHGLTAERLR 78 Query: 72 DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR 131 P+F + + + +AHNA+FD F+ E R + L +R + TL++ R Sbjct: 79 GAPAFEQVADRIGALLDGR--VMVAHNAQFDYDFLAHEFARA-RLHLPVARRLCTLALNR 135 Query: 132 RKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 R P L SL YG+ H AL D+ +L+ ++ + +++ Sbjct: 136 RVEPPVAGLSLASLAAYYGVP--QTRAHDALDDTRVLAGIFRSSLAEAARLGVPLPLVAC 193 Query: 191 RFFKEEK--KTVPNISLLKRDKPLF 213 ++ + P R+ Sbjct: 194 PPRQDARFAPKPPKTPCAYRNPGRP 218 >gi|88860421|ref|ZP_01135059.1| RNase T [Pseudoalteromonas tunicata D2] gi|88817619|gb|EAR27436.1| RNase T [Pseudoalteromonas tunicata D2] Length = 221 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKT---NRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI +D ++T + P G A++ + Sbjct: 18 PVVIDVETAGFNNQTDALLEIAVTTLKMDDEGVLSLDKTLHFHITPFEGANIEQAAIEFN 77 Query: 64 GITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI L+ S F E F Q + +AHNA FD GF+NA ++R Sbjct: 78 GIDPFSALRGAVEESIAFKEICKFVSKSQKDAGCQRSVIVAHNAAFDQGFVNAAVERCKI 137 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT S+A + L C GI + H A+ D+ ++++ Sbjct: 138 KRTPFHPFVSFDTTSLAGLAL--GQTVLAKACIAAGIEFDNSQAHSAVYDTERTAELFCF 195 Query: 174 MMVGGSQIN 182 ++ + Sbjct: 196 IVNKWQALG 204 >gi|92114250|ref|YP_574178.1| ribonuclease T [Chromohalobacter salexigens DSM 3043] gi|122419726|sp|Q1QVM9|RNT_CHRSD RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|91797340|gb|ABE59479.1| RNAse T [Chromohalobacter salexigens DSM 3043] Length = 221 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 24/203 (11%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +++ D ++EI AV + + T + P G Sbjct: 13 RFRGFLPVVVDLETGGFNAQRDALLEIAAVTLTMDAQGNLMPDDTHAFHVRPFEGANIEQ 72 Query: 58 EALKLHGITDE-------FLKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFIN 107 AL GI + L + + IF A + HNA FD GF+N Sbjct: 73 AALDFTGIDLDSPLRQQVALSEHDALGEIFKPVRKAIKANQCTRAILVGHNAAFDQGFLN 132 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A ++R I ++P P DT ++ + + L C+ GI + S H A D+ Sbjct: 133 AAVERNGIKRNPFHPFSCFDTATLGGLVY--GQTVLARACRAAGIEFDNASAHSARYDTE 190 Query: 166 LLSDVYIKMM-----VGGSQINF 183 ++++ M+ +GG + Sbjct: 191 RTAELFCAMVNRYKNLGGWDLAL 213 >gi|302334813|ref|YP_003800020.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084] gi|301318653|gb|ADK67140.1| DNA polymerase III, epsilon subunit [Olsenella uli DSM 7084] Length = 1001 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 12/196 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGL ++ +IEI A + FQ F+ P G PE L I+D Sbjct: 57 FVVLDTETTGLSFRDCELIEIAAARIR-GGVVEERFQTFVHPMG-PIPPEISALTHISDL 114 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D PS + +F +AHNA FD F+ + + IDTL+ Sbjct: 115 DVTDAPSAVDAVAALSEFVA--GDPVLAHNATFDRTFVES----VPGGRDVSDNWIDTLA 168 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++R P S + L + + +G + H A D L+ ++ M+V + G Sbjct: 169 LSRIALPRLSSHRLADMARAFGCD---SATHRATADVEALAGMWRIMLVALMDLPSGLLD 225 Query: 188 NEDRFFKEEKKTVPNI 203 +E + I Sbjct: 226 LLSTMHEEVDWQLRPI 241 >gi|57652115|ref|YP_186779.1| exonuclease [Staphylococcus aureus subsp. aureus COL] gi|87160447|ref|YP_494527.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195792|ref|YP_500602.1| hypothetical protein SAOUHSC_02110 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222044|ref|YP_001332866.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|161510116|ref|YP_001575775.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141184|ref|ZP_03565677.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451040|ref|ZP_05699076.1| exonuclease [Staphylococcus aureus A5948] gi|262049938|ref|ZP_06022798.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30] gi|262053185|ref|ZP_06025343.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3] gi|282923233|ref|ZP_06330914.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765] gi|284024940|ref|ZP_06379338.1| exonuclease [Staphylococcus aureus subsp. aureus 132] gi|294849443|ref|ZP_06790185.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754] gi|304379080|ref|ZP_07361827.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57286301|gb|AAW38395.1| exonuclease [Staphylococcus aureus subsp. aureus COL] gi|87126421|gb|ABD20935.1| exonuclease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203350|gb|ABD31160.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374844|dbj|BAF68104.1| exonuclease [Staphylococcus aureus subsp. aureus str. Newman] gi|160368925|gb|ABX29896.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861282|gb|EEV84094.1| exonuclease [Staphylococcus aureus A5948] gi|259158912|gb|EEW43998.1| hypothetical protein SA930_1190 [Staphylococcus aureus 930918-3] gi|259161946|gb|EEW46528.1| hypothetical protein SAD30_1408 [Staphylococcus aureus D30] gi|282593144|gb|EFB98143.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9765] gi|294823580|gb|EFG40007.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A9754] gi|302751766|gb|ADL65943.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342315|gb|EFM08207.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196235|gb|EFU26590.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus CGS01] gi|320139726|gb|EFW31595.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA131] gi|320142357|gb|EFW34171.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177] gi|329314570|gb|AEB88983.1| Exonuclease [Staphylococcus aureus subsp. aureus T0131] gi|329728665|gb|EGG65095.1| exonuclease [Staphylococcus aureus subsp. aureus 21189] Length = 184 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V+++D T TF + P S + +K+HGI E Sbjct: 6 FVALDFETA--NGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQDY-FSQQNIKIHGIQPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P+F +F F + +AHNA FD+ ++ +Q I P + Sbjct: 62 DVENAPTFDYVFPYMMQFIA--DLPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +A+R S R L + + Y + H AL D+ + + +++ + + Sbjct: 119 LAKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDAKACAMITFRLLKNYENLTY 171 >gi|15616303|ref|NP_244608.1| hypothetical protein BH3741 [Bacillus halodurans C-125] gi|10176365|dbj|BAB07460.1| BH3741 [Bacillus halodurans C-125] Length = 219 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 7/171 (4%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 VFD ETTG DR+IE+ AV + T+ TFQ ++ P R E +L GI++ Sbjct: 27 FTVFDTETTGFAVGAGDRLIEVAAVHVEGLEVTDFTFQTYVNPE-RNIPAEIEELTGISE 85 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +K+ P+ F+ F + A W+ H A FDV + ELQR L+ + DT Sbjct: 86 DKVKNAPASLPAIESFFRFVEQSGSAAWVGHYASFDVTVLKKELQRYQFS-LNVPLLFDT 144 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 L + PS DL K++G I R H AL D+ + ++ +++ Sbjct: 145 LDLIGYISPSKDMRDLEVYAKQFGTYIYER--HQALGDALTTAHLFCELLR 193 >gi|308068487|ref|YP_003870092.1| DNA polymerase III subunit epsilon [Paenibacillus polymyxa E681] gi|305857766|gb|ADM69554.1| DNA polymerase III, epsilon chain [Paenibacillus polymyxa E681] Length = 245 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 10/178 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEA 59 +++ +VFD+ETTG ++ D I+ GA+ ++ + F + P Sbjct: 53 TPLDRLETVVFDLETTGFSAQHGDEILSFGAIRVVGDMVMEKEQFYTLVNPRTV-IPEHI 111 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L GIT E P + +F F + +AH + D F+NA L + +K L Sbjct: 112 TELTGITREMTDQAPPLMNGLHDFMSFVGGR--VLVAHASAHDKAFLNAALWKTSKVQL- 168 Query: 120 PSRIIDTLSIARRKHPSSR--NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R++DT+ +A+ P L+ L I I R H AL D+ + + +++ + Sbjct: 169 THRVLDTMMLAKWLEPQQHQTYSLDELLAYQSIPIEGR--HHALEDAKMTAKLWVAYV 224 >gi|206580062|ref|YP_002238188.1| ribonuclease T [Klebsiella pneumoniae 342] gi|288935177|ref|YP_003439236.1| ribonuclease T [Klebsiella variicola At-22] gi|290509235|ref|ZP_06548606.1| ribonuclease T [Klebsiella sp. 1_1_55] gi|206569120|gb|ACI10896.1| ribonuclease T [Klebsiella pneumoniae 342] gi|288889886|gb|ADC58204.1| ribonuclease T [Klebsiella variicola At-22] gi|289778629|gb|EFD86626.1| ribonuclease T [Klebsiella sp. 1_1_55] Length = 215 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDETLHFHVEPFEGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF E + +AHNA FD F Sbjct: 73 EALAFNGINPHDPERGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTA 132 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 133 AERAGLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACIAAGMAFDGAQAHSALYDTEQT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AQLFCEIVNRWKRLG 205 >gi|15924884|ref|NP_372418.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu50] gi|15927468|ref|NP_375001.1| hypothetical protein SA1710 [Staphylococcus aureus subsp. aureus N315] gi|21283564|ref|NP_646652.1| hypothetical protein MW1835 [Staphylococcus aureus subsp. aureus MW2] gi|49484135|ref|YP_041359.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252] gi|49486713|ref|YP_043934.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476] gi|82751547|ref|YP_417288.1| DNA polymerase III alpha chain [Staphylococcus aureus RF122] gi|148268366|ref|YP_001247309.1| exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH9] gi|150394428|ref|YP_001317103.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH1] gi|156980210|ref|YP_001442469.1| hypothetical protein SAHV_1879 [Staphylococcus aureus subsp. aureus Mu3] gi|253316903|ref|ZP_04840116.1| hypothetical protein SauraC_12304 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253729653|ref|ZP_04863818.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734998|ref|ZP_04869163.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus TCH130] gi|255006681|ref|ZP_05145282.2| hypothetical protein SauraM_09445 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257426026|ref|ZP_05602448.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus 55/2053] gi|257428699|ref|ZP_05605094.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322] gi|257431309|ref|ZP_05607685.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397] gi|257434027|ref|ZP_05610378.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp. aureus E1410] gi|257436931|ref|ZP_05612973.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus M876] gi|257793752|ref|ZP_05642731.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781] gi|258408894|ref|ZP_05681176.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|258421002|ref|ZP_05683933.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9719] gi|258422971|ref|ZP_05685870.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9635] gi|258430026|ref|ZP_05688396.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9299] gi|258443456|ref|ZP_05691798.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115] gi|258445314|ref|ZP_05693505.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6300] gi|258447878|ref|ZP_05696012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6224] gi|258453311|ref|ZP_05701296.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A5937] gi|269203547|ref|YP_003282816.1| exonuclease [Staphylococcus aureus subsp. aureus ED98] gi|282894561|ref|ZP_06302789.1| exonuclease [Staphylococcus aureus A8117] gi|282904525|ref|ZP_06312410.1| exonuclease [Staphylococcus aureus subsp. aureus C160] gi|282906298|ref|ZP_06314150.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260] gi|282909214|ref|ZP_06317030.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911519|ref|ZP_06319319.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WBG10049] gi|282914692|ref|ZP_06322477.1| exonuclease [Staphylococcus aureus subsp. aureus M899] gi|282917241|ref|ZP_06324996.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus D139] gi|282919729|ref|ZP_06327461.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C427] gi|282925133|ref|ZP_06332793.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C101] gi|282928067|ref|ZP_06335674.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102] gi|283771044|ref|ZP_06343935.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus H19] gi|283958655|ref|ZP_06376101.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97] gi|293507769|ref|ZP_06667611.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus 58-424] gi|293510786|ref|ZP_06669488.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus M809] gi|293539326|ref|ZP_06672005.1| exonuclease [Staphylococcus aureus subsp. aureus M1015] gi|295407274|ref|ZP_06817073.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819] gi|295428476|ref|ZP_06821103.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276903|ref|ZP_06859410.1| exonuclease [Staphylococcus aureus subsp. aureus MR1] gi|297208922|ref|ZP_06925326.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246200|ref|ZP_06930051.1| exonuclease [Staphylococcus aureus A8796] gi|297590053|ref|ZP_06948693.1| exonuclease [Staphylococcus aureus subsp. aureus MN8] gi|300913021|ref|ZP_07130459.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70] gi|13701687|dbj|BAB42980.1| SA1710 [Staphylococcus aureus subsp. aureus N315] gi|14247666|dbj|BAB58056.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu50] gi|21205005|dbj|BAB95700.1| MW1835 [Staphylococcus aureus subsp. aureus MW2] gi|49242264|emb|CAG40971.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252] gi|49245156|emb|CAG43622.1| putative exonuclease [Staphylococcus aureus subsp. aureus MSSA476] gi|82657078|emb|CAI81515.1| probable DNA polymerase III alpha chain [Staphylococcus aureus RF122] gi|147741435|gb|ABQ49733.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH9] gi|149946880|gb|ABR52816.1| Exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JH1] gi|156722345|dbj|BAF78762.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253726594|gb|EES95323.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727180|gb|EES95909.1| DNA-directed DNA polymerase III [Staphylococcus aureus subsp. aureus TCH130] gi|257271169|gb|EEV03326.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus 55/2053] gi|257274343|gb|EEV05855.1| exonuclease [Staphylococcus aureus subsp. aureus 65-1322] gi|257277958|gb|EEV08614.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397] gi|257280953|gb|EEV11097.1| DNA polymerase subunit III alpha [Staphylococcus aureus subsp. aureus E1410] gi|257283720|gb|EEV13845.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus M876] gi|257787724|gb|EEV26064.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9781] gi|257840341|gb|EEV64803.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|257842950|gb|EEV67368.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9719] gi|257846758|gb|EEV70773.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9635] gi|257849620|gb|EEV73588.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A9299] gi|257851341|gb|EEV75281.1| DNA polymerase subunit III alpha [Staphylococcus aureus A8115] gi|257855832|gb|EEV78756.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6300] gi|257858810|gb|EEV81679.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A6224] gi|257864519|gb|EEV87262.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus A5937] gi|262075837|gb|ACY11810.1| exonuclease [Staphylococcus aureus subsp. aureus ED98] gi|282313091|gb|EFB43489.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C101] gi|282316367|gb|EFB46744.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus C427] gi|282318868|gb|EFB49223.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus D139] gi|282321406|gb|EFB51732.1| exonuclease [Staphylococcus aureus subsp. aureus M899] gi|282324528|gb|EFB54840.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WBG10049] gi|282326782|gb|EFB57079.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330495|gb|EFB60012.1| exonuclease RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260] gi|282590131|gb|EFB95212.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A10102] gi|282595081|gb|EFC00048.1| exonuclease [Staphylococcus aureus subsp. aureus C160] gi|282763048|gb|EFC03180.1| exonuclease [Staphylococcus aureus A8117] gi|283459638|gb|EFC06729.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus H19] gi|283471164|emb|CAQ50375.1| exonuclease [Staphylococcus aureus subsp. aureus ST398] gi|283789695|gb|EFC28517.1| exonuclease [Staphylococcus aureus subsp. aureus A017934/97] gi|285817574|gb|ADC38061.1| DNA polymerase III polC-type [Staphylococcus aureus 04-02981] gi|290919861|gb|EFD96930.1| exonuclease [Staphylococcus aureus subsp. aureus M1015] gi|291094832|gb|EFE25100.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus 58-424] gi|291466417|gb|EFF08941.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus M809] gi|294967849|gb|EFG43879.1| DNA polymerase III subunit epsilon [Staphylococcus aureus A8819] gi|295127458|gb|EFG57097.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886412|gb|EFH25341.1| exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176907|gb|EFH36164.1| exonuclease [Staphylococcus aureus A8796] gi|297577181|gb|EFH95895.1| exonuclease [Staphylococcus aureus subsp. aureus MN8] gi|298695233|gb|ADI98455.1| probable DNA polymerase III alpha chain [Staphylococcus aureus subsp. aureus ED133] gi|300885799|gb|EFK81006.1| exonuclease [Staphylococcus aureus subsp. aureus TCH70] gi|312437640|gb|ADQ76711.1| exonuclease [Staphylococcus aureus subsp. aureus TCH60] gi|312830266|emb|CBX35108.1| exonuclease family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129297|gb|EFT85291.1| hypothetical protein CGSSa03_08545 [Staphylococcus aureus subsp. aureus CGS03] gi|315193423|gb|EFU23820.1| hypothetical protein CGSSa00_04826 [Staphylococcus aureus subsp. aureus CGS00] gi|329724805|gb|EGG61309.1| exonuclease [Staphylococcus aureus subsp. aureus 21172] gi|329731424|gb|EGG67787.1| exonuclease [Staphylococcus aureus subsp. aureus 21193] Length = 184 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V+++D T TF + P S + +K+HGI E Sbjct: 6 FVALDFETA--NGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQDY-FSQQNIKVHGIQPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P+F +F F + +AHNA FD+ ++ +Q I P + Sbjct: 62 DVENAPTFDYVFPYMMQFIA--DLPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +A+R S R L + + Y + H AL D+ + + +++ + + Sbjct: 119 LAKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDAKACAMITFRLLKNYENLTY 171 >gi|226330322|ref|ZP_03805840.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198] gi|225201117|gb|EEG83471.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198] Length = 212 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 20/196 (10%) Query: 5 NKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNS 56 N+ R +V D+ET G ++K D ++EI A+ L + K + T + P G Sbjct: 12 NRFRGYYPVVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVEPFEGANLE 71 Query: 57 PEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINA 108 P AL+ GI L+ S + + A +AHNA FD F+ A Sbjct: 72 PAALEFTGIDPTNPLRGAVSEYEALHAIFKMVRKGMKDADCNRAIIVAHNANFDHSFVMA 131 Query: 109 ELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 +R ++P P DT +++ + L C GI + HGAL D++ Sbjct: 132 AAERAGLKRNPFHPFATFDTAALSGLVL--GQTILAKACITAGIPFDSKLAHGALYDTNR 189 Query: 167 LSDVYIKMMVGGSQIN 182 S ++ +++ ++ Sbjct: 190 TSLLFCELVNRWKKLG 205 >gi|154488710|ref|ZP_02029559.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis L2-32] gi|154082847|gb|EDN81892.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis L2-32] Length = 210 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 11/171 (6%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTGL K DR IEIG V + + + S A +H IT Sbjct: 5 FAVVDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLIH---VDRSVGASWVHHITA 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126 L P F I E D + ++AHN FD F+ AE R+ P+ S ++ T Sbjct: 62 RDLLHAPDFEGIAHELRDLLAGR--VFVAHNVSFDSRFLLAEYSRMGASIPVHQSTMLCT 119 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + ++R R L+ C +GI ++ H AL D+H + + +++ Sbjct: 120 MKLSRSLI--GRGKLSDCCDYFGI--ANEDAHSALSDAHATALLLGRLLEA 166 >gi|88705709|ref|ZP_01103419.1| Ribonuclease T [Congregibacter litoralis KT71] gi|88700222|gb|EAQ97331.1| Ribonuclease T [Congregibacter litoralis KT71] Length = 210 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 20/200 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NG 52 M K++ R ++ D+ET G S D I+EI A V + D + + T + P G Sbjct: 1 MSMKSRFRGFLPVIVDMETGGFSSSTDAILEIAATVVRMDDTGQIAVHETHSFNVAPFEG 60 Query: 53 RKNSPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVG 104 AL GI E L +K + +F +Q A + HNA FD G Sbjct: 61 ANIEQSALDFTGIDPWHPFREALAEKEALGELFQIIRREIRDQECTRAILVGHNAHFDAG 120 Query: 105 FINAELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+NA ++R ++P P DT +++ + + L C GI + H A Sbjct: 121 FLNAAVERCEIKRNPFHPFSHFDTATLSGLAY--GQTVLAKSCYEAGIPFDNEQAHSAAY 178 Query: 163 DSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ ++ Sbjct: 179 DAERTAELFCGIVNTWQKLG 198 >gi|113970710|ref|YP_734503.1| ribonuclease T [Shewanella sp. MR-4] gi|114047939|ref|YP_738489.1| ribonuclease T [Shewanella sp. MR-7] gi|122944589|sp|Q0HTX3|RNT_SHESR RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|123029558|sp|Q0HHM1|RNT_SHESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|113885394|gb|ABI39446.1| RNAse T [Shewanella sp. MR-4] gi|113889381|gb|ABI43432.1| RNAse T [Shewanella sp. MR-7] Length = 222 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKN 55 K++ R +V D+ET G +S+ D ++EI +++ D ++T + P G Sbjct: 11 KHRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDDEGLLGIDKTLHFNIEPFEGANL 70 Query: 56 SPEALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFIN 107 PEAL +GI L+ S F E + + +AHNA FD GF++ Sbjct: 71 EPEALAFNGIDPTNPLRGAVSEKEAFLEIFKAVKKAQKASDCHRSIIVAHNAAFDHGFVS 130 Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 ++R + P P DT ++A L C GI ++ H AL D+ Sbjct: 131 KAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACIMAGIPFDNKEAHSALYDTE 188 Query: 166 LLSDVYIKMMVGGSQIN 182 ++++ ++ + Sbjct: 189 RTAELFCYIVNRWKHLG 205 >gi|313123658|ref|YP_004033917.1| ATP-dependent DNA helicase ding [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280221|gb|ADQ60940.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 929 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + DRII+ G + D + +T+ + P+ RK L GI Sbjct: 9 FAVVDLETTGTRKEEGDRIIQFGCAIVKDG-EVVKTYSFMMNPH-RKIPLAVTNLTGIDQ 66 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + F + + Q+ ++AHN FD F+N EL + L + +DT+ Sbjct: 67 KMVAGQADFKHYAPKIREIL--QDKVFVAHNVNFDFPFLNYELTNAGFEAL-TCKAVDTV 123 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +A+ P+ L L + I H + H A D++ + + +K++ + + Sbjct: 124 ELAKIAFPTLPSYKLRDLTA--SLEIKHANPHKADSDAYGTAVLLLKIIDKLASL 176 >gi|119946100|ref|YP_943780.1| ribonuclease T [Psychromonas ingrahamii 37] gi|119864704|gb|ABM04181.1| RNAse T [Psychromonas ingrahamii 37] Length = 207 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNSPEALKLH 63 ++ DIET+GL+++ D I+EI A+ S+ + P G P+AL Sbjct: 14 PVIIDIETSGLNAQTDAILEIAAILPAMDSQGYLFAAEKIHFNVLPFEGANLDPKALAFT 73 Query: 64 GITD-EFLKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAELQRIN- 114 GI L+ +E + + + +AHNA FD GFIN +R N Sbjct: 74 GIDPFNPLRAAVDERDALTEIFKLVRKHQKQNLCNRSIIVAHNATFDQGFINKATERCNL 133 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT S+A + L C++ I ++ H AL D+ + +D++ Sbjct: 134 KRMPFHPFVSFDTASMAGLIL--GQTVLAKACQQASIPYDNKQAHSALYDTEVTADLFFY 191 Query: 174 MMVGGSQIN 182 M+ + Sbjct: 192 MVNKLKALG 200 >gi|90109308|pdb|2F96|A Chain A, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T (Ribonuclease T) gi|90109309|pdb|2F96|B Chain B, 2.1 A Crystal Structure Of Pseudomonas Aeruginosa Rnase T (Ribonuclease T) Length = 224 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI A + K T+ + P G P AL+ Sbjct: 31 PVVVDVETGGFNSATDALLEIAATTVGXDEKGFLFPEHTYFFRIEPFEGANIEPAALEFT 90 Query: 64 GI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI D L+ + +E + + A + HN+ FD+GF+NA + R Sbjct: 91 GIKLDHPLRXAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGI 150 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ G +R H A D+ ++++ Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGXEFDNREAHSARYDTEKTAELFCG 208 Query: 174 MMVGGSQIN 182 ++ + Sbjct: 209 IVNRWKEXG 217 >gi|269216510|ref|ZP_06160364.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122] gi|269130039|gb|EEZ61121.1| putative ATP-dependent helicase DinG [Slackia exigua ATCC 700122] Length = 1045 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 11/179 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D ETTG +D + +I A + F F+ P G+ E +L I DE Sbjct: 58 VVLDTETTGFSQNHDELTQIAAARMKQGRIV-EWFVTFVNP-GKPIPEEVARLTDIHDED 115 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D PS + F ++ +AHNA FD GF PL + ID+L + Sbjct: 116 VADAPSPDDARIQLAAFVG--DSCIVAHNAAFDKGFCTKSQ---GGAPLSDNLWIDSLDL 170 Query: 130 ARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 AR P + + L + K + +S H A D L Y M+ +++ + Sbjct: 171 ARIALPRLKSHRLIDIVKAFDAPVS---THRADADVEALCAAYRIMLAAIAKMPKDLVS 226 >gi|261753605|ref|ZP_05997314.1| DNA polymerase III [Brucella suis bv. 3 str. 686] gi|261743358|gb|EEY31284.1| DNA polymerase III [Brucella suis bv. 3 str. 686] Length = 233 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 9/218 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + + +SP+A Sbjct: 18 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 75 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 76 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 133 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + T+ ARR L+ + G+ +HGAL D++L + +Y+ + Sbjct: 134 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARMGH-RHGALEDAYLTAGLYLH----QQGV 188 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + K P + + R + Sbjct: 189 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 226 >gi|269941365|emb|CBI49762.1| putative exonuclease [Staphylococcus aureus subsp. aureus TW20] Length = 184 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V+++D T +TF + P S + +K+HGI E Sbjct: 6 FVALDFETA--NGKRTSICSVGMVKVIDSQIT-KTFHTLVNPQDY-FSQQNIKIHGIQPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P+F +F F + +AHNA FD+ ++ +Q I P + Sbjct: 62 DVENAPTFDYVFPYMMQFIA--DLPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +A+R S R L + + Y + H AL D+ + + +++ + + Sbjct: 119 LAKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDAKACAMITFRLLKNYENLTY 171 >gi|224584057|ref|YP_002637855.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468584|gb|ACN46414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 257 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 17/197 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF + +AHNA FD F+ A Sbjct: 73 EALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQINFG 184 + ++ ++ + GS G Sbjct: 191 AVLFCEISIAGSAWAAG 207 >gi|217973787|ref|YP_002358538.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223] gi|217498922|gb|ACK47115.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223] Length = 300 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 7/164 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D ETTGL + D+IIEI A++ S + F+ + PN K S + + GIT+ Sbjct: 19 FIALDAETTGLSADVDKIIEIAAIKFDLLSNDHPVFEALINPN-VKVSRKITSITGITNA 77 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L D+ +F+ I + F + +A+NAKFD GF++ E + + + L+ Sbjct: 78 MLADQETFTDIAQDLKQFIG--DLPIVAYNAKFDKGFLDTEFANVGI--ILNNHYHCALN 133 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +A+ L ++ + I ++ H A D+ V++ Sbjct: 134 LAKAAFNLPNYKLATVAEHCSIPLN--EAHRAKADAVAAGRVFM 175 >gi|168463155|ref|ZP_02697086.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195634173|gb|EDX52525.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 215 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF + +AHNA FD F+ A Sbjct: 73 EALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|237808201|ref|YP_002892641.1| ribonuclease T [Tolumonas auensis DSM 9187] gi|237500462|gb|ACQ93055.1| ribonuclease T [Tolumonas auensis DSM 9187] Length = 206 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 20/200 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NG 52 M K + R +V D+ET G + K D ++E+ A ++ + ++T + P G Sbjct: 1 MCLKERFRGYYPVVIDVETAGFNPKTDALLEMAATTLKMDQDGWLSLDQTIHFHVEPFEG 60 Query: 53 RKNSPEALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVG 104 A+ +GI L+ S E + A +AHNA FD Sbjct: 61 ANIEKAAIDFNGIDPFNPLRGAVSEYDALHETFKIIRKGMKAEGCNRAIVVAHNATFDHS 120 Query: 105 FINAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+ A +R + ++P P DT ++A + L C+ I + H AL Sbjct: 121 FMMAASERASLKRNPFHPFATFDTAALAGLAL--GQTVLAKACQTAAIPFDNNEAHSALY 178 Query: 163 DSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 179 DTERTAELFCYIVNKWKSLG 198 >gi|323187079|gb|EFZ72395.1| ribonuclease T [Escherichia coli RN587/1] Length = 215 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF +AHNA FD F+ A Sbjct: 73 EALAFNGIDPNDPDRGAISEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGMDFDSTQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|238022741|ref|ZP_04603167.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147] gi|237865944|gb|EEP67080.1| hypothetical protein GCWU000324_02650 [Kingella oralis ATCC 51147] Length = 464 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 21/224 (9%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R + ++ D+ETTG DRI E+ + T Q + PN S L Sbjct: 18 RTLPIPVVILDLETTGGHFYADRITELAFLHFWQGKIT--AVQQLVQPN-MPISGFVRDL 74 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 GI+DE L+ +P+F+ + + + IAHN++FD F+ E +R Sbjct: 75 TGISDEMLQGQPTFAQFAPQVLPLL--RGSLLIAHNSRFDYTFLRHECRRNGFAFATAG- 131 Query: 123 IIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + ++ ++R+ +P +++L+S+ +R+G+ ++ R H A+ D +++ + Sbjct: 132 -LCSVQLSRKLYPEFFKHNLDSIIERHGLAVASR--HRAMSDVLAVAE----------YL 178 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL-FTRITKEELDEH 224 + + + + N +L + P + DEH Sbjct: 179 QLALREKGAPLLGQLMRQLANPPMLPANLPAGVFQAASALPDEH 222 >gi|51893409|ref|YP_076100.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM 14863] gi|51857098|dbj|BAD41256.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM 14863] Length = 390 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 17/228 (7%) Query: 6 KMRK--IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 MR +V D ETTGL+ RII+IG V + + + +T++ L + S A++++ Sbjct: 19 DMRYNLVVIDTETTGLEYDQHRIIQIGVVAIKE-QRIVKTWESKLRLIDGEVSAYAMQVN 77 Query: 64 GITD-EFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + + +K P ++ + + F AHN FD+GF+ AE R P Sbjct: 78 RLDPSDMRSEKYPHPKAVLRKLQEEFLRPGVLLGAHNLSFDLGFLQAEFARHGL-PQWQG 136 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +D++++ R P L SL + + + ++ H AL D+ + V + ++ Q Sbjct: 137 NFVDSMALGRALLPDLSASLESLARHFRVELTQH--HDALADAVATAHVLLHLLDLAQQR 194 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQ 229 + P+ + + +T+EE+ IQ Sbjct: 195 GLDPLNLLIERQGRPIRYRPDNARV---------VTQEEILAELAKIQ 233 >gi|283785135|ref|YP_003365000.1| ribonuclease T [Citrobacter rodentium ICC168] gi|282948589|emb|CBG88180.1| ribonuclease T [Citrobacter rodentium ICC168] Length = 214 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +++ D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNARTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF + +AHNA FD F+ A Sbjct: 73 EALAFNGIDPNNPLRGAVSEYDALHAIFKMVRKGIKDNGCNRAIMVAHNATFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGTQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|156934185|ref|YP_001438101.1| ribonuclease T [Cronobacter sakazakii ATCC BAA-894] gi|166228564|sp|A7MFC6|RNT_ENTS8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|156532439|gb|ABU77265.1| hypothetical protein ESA_02012 [Cronobacter sakazakii ATCC BAA-894] Length = 223 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI AV L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF E N +AHNA FD F+ A Sbjct: 73 EALAFNGIDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLAKACIAAGMPFDSTQAHSALYDTEQT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 ALLFCEIVNRWKRLG 205 >gi|120555417|ref|YP_959768.1| ribonuclease T [Marinobacter aquaeolei VT8] gi|166228568|sp|A1U3L2|RNT_MARAV RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|120325266|gb|ABM19581.1| RNAse T [Marinobacter aquaeolei VT8] Length = 221 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 18/211 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G + + D ++EI AV + + + T + P G Sbjct: 14 RFRGFLPVVVDVETAGFNPERDALLEIAAVMLTMDEDGWLRRGETHVQQIDPFEGANLEQ 73 Query: 58 EALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 AL GI E + ++ S IFS E + + HNA FD F+ A Sbjct: 74 SALDFTGIDPWNPEREAVPEREGLSEIFSPIRKAVKEHDCKRAVLVGHNATFDHNFVFAA 133 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 R I ++P P DT ++A + L CK GI S++ H A D+ Sbjct: 134 ALRADIKRNPFHPFSTFDTATLAGLAY--GHTVLAQACKLAGIPFSNKEAHSAAYDAEKT 191 Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKK 198 +D++ ++ ++ GF +E ++ Sbjct: 192 ADLFCGIVNRWRELG-GFPPPPIEIAEEPQE 221 >gi|62180023|ref|YP_216440.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614147|ref|YP_001588112.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168819183|ref|ZP_02831183.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|198245565|ref|YP_002215700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|81309702|sp|Q57PK2|RNT_SALCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|62127656|gb|AAX65359.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161363511|gb|ABX67279.1| hypothetical protein SPAB_01887 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197940081|gb|ACH77414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205343777|gb|EDZ30541.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086089|emb|CBY95863.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322714491|gb|EFZ06062.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326623447|gb|EGE29792.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 215 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFAGANLQP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF + +AHNA FD F+ A Sbjct: 73 EALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|120599226|ref|YP_963800.1| ribonuclease T [Shewanella sp. W3-18-1] gi|166200022|sp|A1RKQ1|RNT_SHESW RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|120559319|gb|ABM25246.1| RNAse T [Shewanella sp. W3-18-1] gi|319426004|gb|ADV54078.1| ribonuclease T [Shewanella putrefaciens 200] Length = 223 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKN 55 K++ R +V D+ET G +S+ D ++EI +++ D ++T + P G Sbjct: 11 KHRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDDEGMLGIDKTLHFHIEPFEGANL 70 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 P AL +GI + L+ S F + + + +AHNA FD GF++ Sbjct: 71 EPAALAFNGIDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVS 130 Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 ++R + P P DT ++A L C GI ++ H AL D+ Sbjct: 131 KAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACMMAGIPFDNKEAHSALYDTE 188 Query: 166 LLSDVYIKMMVGGSQIN 182 ++++ ++ Q+ Sbjct: 189 RTAELFCYIVNRWKQLG 205 >gi|309803980|ref|ZP_07698062.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners LactinV 11V1-d] gi|308163899|gb|EFO66164.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners LactinV 11V1-d] Length = 933 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K +DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + +N ++AHN FD+ F+N EL P D + IDT+ Sbjct: 69 QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFD-GKAIDTV 125 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ P+ L + I H + H A D+ + + + +K++ Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKII 172 >gi|148986116|ref|ZP_01819102.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP3-BS71] gi|149004079|ref|ZP_01828884.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69] gi|147757891|gb|EDK64900.1| exonuclease family protein [Streptococcus pneumoniae SP14-BS69] gi|147921830|gb|EDK72957.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP3-BS71] gi|301799167|emb|CBW31680.1| unnamed protein product [Streptococcus pneumoniae OXC141] Length = 307 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 85/222 (38%), Gaps = 20/222 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ET + + IG V+ D + + TF + P + +HGIT E Sbjct: 5 YVALDVETA--NDFRGSVCSIGLVKFKDGNIVD-TFYTLINPEEEFDDFNIF-IHGITPE 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + DF +AH A+FD+G + Q+ D D I + Sbjct: 61 DVLDSPTFPEVRKSIVDFIGLD--IVVAHFAQFDMGALKDVYQKYELD-FDNIEYICSYR 117 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P L L K I + H H AL D+ + ++ S +F T Sbjct: 118 LAKVALPGQLNYKLKRLAKNLNIELDH---HNALSDARASGLILEYLL---STNSFSDLT 171 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP------LFTRITKEELDE 223 + ++ K + KR K L + T+EE Sbjct: 172 AFLKEYRYNKTGLLGQYGFKRKKGYQYKENLIYQPTEEEKAA 213 >gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens ATCC 13124] gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens ATCC 13124] Length = 870 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 8/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K IVFD+E+TG+D D II+I A++L + F+ FL +K ++ + Sbjct: 498 EFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKN--KKPVKDSYYV 555 Query: 63 HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +DE L+ + EF ++ +++ + HN ++D+ + +EL+R N Sbjct: 556 HGFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFK 613 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL I RR +P + L +L K Y H+ H A+ D ++ ++ + Sbjct: 614 TFYDTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 666 >gi|146292700|ref|YP_001183124.1| ribonuclease T [Shewanella putrefaciens CN-32] gi|166200020|sp|A4Y5U2|RNT_SHEPC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|145564390|gb|ABP75325.1| RNAse T [Shewanella putrefaciens CN-32] Length = 224 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYS--KTNRTFQVFLCP-NGRKN 55 K++ R +V D+ET G +S+ D ++EI +++ D ++T + P G Sbjct: 11 KHRFRGYFPVVIDVETAGFNSQTDALLEIAVTLLKMDDEGMLGIDKTLHFHIEPFEGANL 70 Query: 56 SPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 P AL +GI + L+ S F + + + +AHNA FD GF++ Sbjct: 71 EPAALAFNGIDPNNPLRGAVSEKEAFLDIFKAVKKAQKAADCHRCIIVAHNAAFDHGFVS 130 Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 ++R + P P DT ++A L C GI ++ H AL D+ Sbjct: 131 KAIERCDLKRSPFHPFATFDTATLAGLAI--GHTVLAKACMMAGIPFDNKEAHSALYDTE 188 Query: 166 LLSDVYIKMMVGGSQIN 182 ++++ ++ Q+ Sbjct: 189 RTAELFCYIVNRWKQLG 205 >gi|167041229|gb|ABZ05986.1| putative exonuclease [uncultured marine microorganism HF4000_001N02] Length = 299 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 9/170 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R + FD+ETTGLD++ DRI++ + +D S N + P R A ++HGI+ Sbjct: 38 RVLGFDLETTGLDARKDRIVQYALIGSDVDGSHIN--LASLVDP-RRGIPTAASRIHGIS 94 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIID 125 +E ++ SF + + ++A + HN + FD F+ E R + P I+D Sbjct: 95 EEDVRGVGSFETHVGAISELI--EDAVIVGHNISNFDWRFLELECMRAGVETPIPRAIVD 152 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T S+AR+ R L LC RY I+I H A D+ + MM Sbjct: 153 TYSLARKLRIPGRRTLGVLCARYDISI--GRAHSADADAGASLLLLWSMM 200 >gi|288921215|ref|ZP_06415500.1| stress protein [Frankia sp. EUN1f] gi|288347369|gb|EFC81661.1| stress protein [Frankia sp. EUN1f] Length = 622 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 10/192 (5%) Query: 15 ETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKP 74 ET+GL + DRI+ I V++ + L P P + +HG+T E L P Sbjct: 2 ETSGLAADRDRILSIAVVQVGADGAVGERWTTLLDPGC---DPGPVHIHGLTRELLAGSP 58 Query: 75 SFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK- 133 +F+ + E + +AHNA FD F+ AE R ++ L R + + +ARR Sbjct: 59 TFADVVDELASRLAGR--VMVAHNASFDWRFLTAEAVRAGRE-LPTERRMCSCVLARRLD 115 Query: 134 HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK-TNEDRF 192 P L ++ + + +H AL D+ ++++V +M+ + + T DR Sbjct: 116 LPVPDFRLATIADFWAVPFE--RQHDALADAMVVAEVLPRMLALAGEQDLELPITAGDRT 173 Query: 193 FKEEKKTVPNIS 204 + P Sbjct: 174 PTPQPARAPRAR 185 >gi|227890751|ref|ZP_04008556.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus salivarius ATCC 11741] gi|227867160|gb|EEJ74581.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus salivarius ATCC 11741] Length = 937 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 11/176 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MI++ V D+ETTG D+II+ + + +K F + P G E Sbjct: 9 MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPAEV 64 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 KL GI D+ ++ P F + + QN ++AHN FD F+++EL+R L+ Sbjct: 65 KKLTGIKDKDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELE 122 Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++DT+ + + +P+ L + K + +SH H A D+ +++ I + Sbjct: 123 L-PMMDTVQLTQIIYPTLVSYRLIDVSKY--LQLSHIHPHKADSDTKATAELLINL 175 >gi|57242277|ref|ZP_00370216.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis RM3195] gi|57016957|gb|EAL53739.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter upsaliensis RM3195] Length = 260 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 16/194 (8%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 R +K++ + DIE+TG + +I+EIGAV++ ++ + +R F+ F+ + + Sbjct: 62 TRTSKIKEQVFCIVDIESTGG-INSGQILEIGAVKIQNHKELDR-FESFVKVD--EIPLN 117 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 KL GI +KD P+ + + F F N ++ ++AHN KFD FI+ L L Sbjct: 118 ITKLTGIELNMVKDAPNLTRVLEAFRLFLN--DSVFVAHNVKFDYNFISKSLYECGFGIL 175 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +R I T+ A+ SS L++L + I H H AL D+ ++++ + Sbjct: 176 L-NRKICTVDFAQCCIQSSHYKLDTLKEILKIESIH---HRALNDALAAAEIFKYCL--- 228 Query: 179 SQINFGFKTNEDRF 192 S++ KT E+ Sbjct: 229 SKLPPHIKTTEELI 242 >gi|319955911|ref|YP_004167174.1| DNA polymerase iii, epsilon subunit [Nitratifractor salsuginis DSM 16511] gi|319418315|gb|ADV45425.1| DNA polymerase III, epsilon subunit [Nitratifractor salsuginis DSM 16511] Length = 272 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 8/172 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + DIET G ++IEIGAV L + +R + F+ +K Sbjct: 66 TPWQMQEYCIIDIETNGSKPGRSQVIEIGAVMLKEGKIIDR-LETFVA--CAYLPEHIIK 122 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GI L + PS ++ +F +A + AHNA FD GF+NA QR P+ + Sbjct: 123 LTGIEPTDLAEAPSRKEALTQLRNFMG--DAVFTAHNAGFDHGFLNASFQRFGLGPIG-N 179 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++ T+ +ARR S R L L + + + ++ H A D+ S V +K Sbjct: 180 PVLCTIDLARRTFESERYGLAYLNE--SLDLGMQAHHRAYNDALAASKVLMK 229 >gi|257065507|ref|YP_003145179.1| exonuclease, DNA polymerase III, epsilon subunit family [Slackia heliotrinireducens DSM 20476] gi|256793160|gb|ACV23830.1| exonuclease, DNA polymerase III, epsilon subunit family [Slackia heliotrinireducens DSM 20476] Length = 986 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 14/180 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M+ +N +V D ETTGL +D + +I A + T+ F F+ P G+ E + Sbjct: 1 MLDRN---LVVLDTETTGLSYNHDELTQIAAARMECGEITD-WFVTFVNP-GKPIPDEIV 55 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L I DE + D P+ + +F +A +AHNA FD F + L+ Sbjct: 56 RLTNIHDEDVVDAPTPDEARALLAEFIG--DAYVVAHNADFDKHFCTKSES---GECLNR 110 Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 + +D+L++AR P + + L L + IS H A D L VY ++ + Sbjct: 111 NIWVDSLALARIALPRMKSHRLIDLVHAFDAPIS---THRADADVEALCAVYRILLSAVA 167 >gi|157145913|ref|YP_001453232.1| ribonuclease T [Citrobacter koseri ATCC BAA-895] gi|166228562|sp|A8AH33|RNT_CITK8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|157083118|gb|ABV12796.1| hypothetical protein CKO_01664 [Citrobacter koseri ATCC BAA-895] Length = 215 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++E+ A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLQP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF + +AHNA FD F+ A Sbjct: 73 EALAFNGIDPSNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGTQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|294140554|ref|YP_003556532.1| ribonuclease T [Shewanella violacea DSS12] gi|293327023|dbj|BAJ01754.1| ribonuclease T [Shewanella violacea DSS12] Length = 223 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA-VELLDYSKT---NRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S+ D ++EI + +D ++T + P G P+AL + Sbjct: 19 PVVIDVETAGFNSQTDALLEIAVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFN 78 Query: 64 GITDE-----FLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 GI + +K +F IF E + +AHNA FD GF++ ++R Sbjct: 79 GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCAL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ L C GI + H AL D+ ++++ Sbjct: 139 KRTPFHPFATFDTAALSGLAL--GHTVLAKACSIAGIDFDNNEAHSALYDTERTAELFCH 196 Query: 174 MMVGGSQIN 182 ++ + Sbjct: 197 IVNKWKALG 205 >gi|194445493|ref|YP_002040683.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404156|gb|ACF64378.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 215 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF + +AHNA FD F+ A Sbjct: 73 EALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|83757883|gb|ABC45996.1| exonuclease family [Salinibacter ruber DSM 13855] Length = 538 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 11/157 (7%) Query: 28 EIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87 EIGAV++ D S +R FQ + P + K+ GIT + + P + ++ F Sbjct: 2 EIGAVKVRDGSVVDR-FQQLVNPQ-QSVPGRITKMTGITTGMVFEAPPADEVLPDYRAFL 59 Query: 88 NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRND-LNSLCK 146 + +AHN FD F++AELQR+ + L P+ + T+ +ARR P + L+ L + Sbjct: 60 G--DGILVAHNVSFDGSFLDAELQRMGDETL-PNETLCTVRLARRLLPGLDSKGLSRLAQ 116 Query: 147 RYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 Y I + R H AL D+ S V + + SQ+ F Sbjct: 117 FYDIDVEGR--HRALGDAEATSVVLRRFV---SQLAF 148 >gi|145595801|ref|YP_001160098.1| hypothetical protein Strop_3286 [Salinispora tropica CNB-440] gi|145305138|gb|ABP55720.1| DNA polymerase III, epsilon subunit [Salinispora tropica CNB-440] Length = 607 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 99/255 (38%), Gaps = 24/255 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG I EIGAV++ + + P G P L GIT Sbjct: 54 FVVVDLETTGGTPDGGGITEIGAVKVRGGEQLG-VLATLVNP-GTPVPPFVTVLTGITQS 111 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P + + F +F +A +AHNA +DVGF+ A P R++DT + Sbjct: 112 MLLPAPPITEVLPSFLEFL-PPDAVLVAHNAPYDVGFLKAACAAHGYRWPSP-RVLDTAA 169 Query: 129 IARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM--VGGSQINF 183 +ARR L +L + + R H AL D+ DV ++ +GG +++ Sbjct: 170 LARRVLTRDEVPNRRLGTLAAYF--RTATRPTHRALDDALATVDVLHGLISRLGGHRVHT 227 Query: 184 GFKTNE-----------DRFFKEEKKTVPNISLLKR--DKPLFTRITKEELDEHDKTIQT 230 + E R E P + L + ++PL+ + + Sbjct: 228 IGEAIEFARAVTPTQRRKRHLAEGLPHSPGVYLFRGADNRPLYVGTSIDIATRVRSYFTA 287 Query: 231 LGKNAIWDRYISSNQ 245 K A +++ + Sbjct: 288 AEKRARISEMLAAAE 302 >gi|104774002|ref|YP_618982.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423083|emb|CAI97804.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125707|gb|ADY85037.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 930 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 9/175 (5%) Query: 9 KIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG + DRII+ G + D + +T+ + P+ RK L GI Sbjct: 10 FAVVDLETTGTRKEEGDRIIQFGCAIVKDG-EVVKTYSFMMNPH-RKIPLSVTNLTGIDQ 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + + F + + Q+ ++AHN FD F+N EL + L + +DT+ Sbjct: 68 KMVAGQADFKHYAPKIREIL--QDTVFVAHNVNFDFPFLNYELTNAGFEAL-TCKAVDTV 124 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 +A+ P+ L L + I H + H A D++ + + +K++ + + Sbjct: 125 ELAKIAFPTLPSYKLRDLTA--SLEIKHANPHKADSDAYGTAVLLLKIIDKLASL 177 >gi|296273686|ref|YP_003656317.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM 7299] gi|296097860|gb|ADG93810.1| DNA polymerase III, epsilon subunit [Arcobacter nitrofigilis DSM 7299] Length = 279 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 85/173 (49%), Gaps = 11/173 (6%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 ++N+++ + DIET G + ++IEIGAV+L + + +++ + + P Sbjct: 69 TKENQIKDQVFCIVDIETNGSNVNKGQVIEIGAVKLKNGEIID-SYESLV--YAKDVPPY 125 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 ++ IT LKD P ++ EF F ++ ++AH+ KFD FI+ ++ N L Sbjct: 126 IQEVTNITPSMLKDAPVLKTVLEEFKIFL--EDDVFVAHDIKFDYRFISESFKKYNLGEL 183 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R + T+ +++R + R L+ L I I ++H A D+ + + Sbjct: 184 H-NRKLCTIDLSKRTIEAQRYGLDFLKDLLHIDID--TQHRAYSDALSTTYIL 233 >gi|163751265|ref|ZP_02158493.1| ribonuclease T [Shewanella benthica KT99] gi|161328979|gb|EDQ00053.1| ribonuclease T [Shewanella benthica KT99] Length = 225 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA-VELLDYSKT---NRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G + + D ++EI + +D ++T + P G P+AL + Sbjct: 19 PVVIDVETAGFNCQTDALLEIAVTMLKMDDEGILSLDKTLHYHIEPFEGANLEPDALAFN 78 Query: 64 GITDE-----FLKDKPSFSSIFSEF---WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 GI + +K +F IF E + +AHNA FD GF++ ++R Sbjct: 79 GIDPTNPLRGAVSEKEAFLEIFKEVKKAQKAVGCHRSIIVAHNAAFDHGFVSKAIERCAL 138 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ L C GI + H AL D+ ++++ Sbjct: 139 KRTPFHPFATFDTAALSGLAL--GHTVLAKACSIAGIDFDNSEAHSALYDTERTAELFCH 196 Query: 174 MMVGGSQIN 182 ++ + Sbjct: 197 IVNKWKTLG 205 >gi|168184157|ref|ZP_02618821.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf] gi|182672739|gb|EDT84700.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf] Length = 855 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 94/176 (53%), Gaps = 8/176 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + +VFD+E+TG+++ D I++I +++ + +FQ FL P +K+ ++ + Sbjct: 489 ELDNENVVVFDVESTGINTTEDEIVQIAGIKINSKGEAIESFQRFLNP--KKSVGDSYLV 546 Query: 63 HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +D+FLK+ + + +F F ++ + HN FD+ +N+EL+R++ + Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLKFI--KDTVIVGHNVTFDISILNSELERLSLEKASFK 604 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 DTL IARR +PS + + L +L K + +S H A+ D D+ + M+ Sbjct: 605 TYYDTLDIARRFYPSLTNHKLETLSKLFN--TETKSSHDAMDDILATKDILMVMLR 658 >gi|167462331|ref|ZP_02327420.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Paenibacillus larvae subsp. larvae BRL-230010] Length = 816 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 9/175 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + M+ V D ETT S D II++G V + ++ T+R + + P G + Sbjct: 1 METTGMKFAVLDFETT-GTSTTDTIIQVGLVIIDEFDITDR-YTSLVNP-GVRIPSSITS 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GITDE +++ PS + ++ + + + +AH+A FD F+ L + P Sbjct: 58 LTGITDEMVENAPSVEKVMADLYPLLS--DCVLVAHHASFDHAFLQRSLTKAGYPPF-TG 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R++DT+ R PS L +C +GI H + H A D+ + ++++I++M Sbjct: 115 RVLDTIDALRVAFPSLGSFQLGHVCSLFGIE--HENPHQANCDAQVTAELWIRIM 167 >gi|70732717|ref|YP_262480.1| exonuclease [Pseudomonas fluorescens Pf-5] gi|68347016|gb|AAY94622.1| exonuclease [Pseudomonas fluorescens Pf-5] Length = 203 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 10/194 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V L R +Q + G + +L GI+ Sbjct: 3 RIAVIDFETTGISPSSSCRATEIAVVILEQGRIVER-YQSLMN-AGVRVPAFIEQLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L+ P + +E +F +AHNA FD F + EL RI + L + Sbjct: 61 NAMLRSAPPAEQVMNEVNEFVGI--TPLLAHNAAFDQKFWDFELGRIKRTRLQNFA--CS 116 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L +ARR P + + L +L G+ H A+ D+ + +++ + + G + G Sbjct: 117 LLLARRLMPAAPNHKLGTLTSFAGLP-HTGQAHRAMADAEMAANL-VAHLAGELRHKHGL 174 Query: 186 KTNEDRFFKEEKKT 199 + F + +K Sbjct: 175 RELSHDFLCKLQKV 188 >gi|16760479|ref|NP_456096.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764782|ref|NP_460397.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141761|ref|NP_805103.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413597|ref|YP_150672.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167551596|ref|ZP_02345350.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994263|ref|ZP_02575355.1| ribonuclease T [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229807|ref|ZP_02654865.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235505|ref|ZP_02660563.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240948|ref|ZP_02665880.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264727|ref|ZP_02686700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194451220|ref|YP_002045472.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469134|ref|ZP_03075118.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737431|ref|YP_002114446.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251543|ref|YP_002146611.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264202|ref|ZP_03164276.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362521|ref|YP_002142158.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200389402|ref|ZP_03216013.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213426003|ref|ZP_03358753.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586461|ref|ZP_03368287.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609934|ref|ZP_03369760.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649691|ref|ZP_03379744.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855187|ref|ZP_03383427.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238913165|ref|ZP_04657002.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289805704|ref|ZP_06536333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824912|ref|ZP_06544333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54039259|sp|P66685|RNT_SALTI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|54042002|sp|P66684|RNT_SALTY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|81821446|sp|Q5PH07|RNT_SALPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|25356018|pir||AD0695 ribonuclease T [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419954|gb|AAL20356.1| RNase T [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502775|emb|CAD01933.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi] gi|29137389|gb|AAO68952.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127854|gb|AAV77360.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194409524|gb|ACF69743.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455498|gb|EDX44337.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712933|gb|ACF92154.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093998|emb|CAR59494.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197215246|gb|ACH52643.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242457|gb|EDY25077.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291124|gb|EDY30477.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199601847|gb|EDZ00393.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205323544|gb|EDZ11383.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327828|gb|EDZ14592.1| ribonuclease T [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335262|gb|EDZ22026.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339447|gb|EDZ26211.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205346854|gb|EDZ33485.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261246638|emb|CBG24448.1| Exoribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993323|gb|ACY88208.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157967|emb|CBW17462.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912417|dbj|BAJ36391.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224052|gb|EFX49115.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129704|gb|ADX17134.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988319|gb|AEF07302.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 215 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF + +AHNA FD F+ A Sbjct: 73 EALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|256822949|ref|YP_003146912.1| ribonuclease T [Kangiella koreensis DSM 16069] gi|256796488|gb|ACV27144.1| ribonuclease T [Kangiella koreensis DSM 16069] Length = 200 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 20/196 (10%) Query: 3 RKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRK 54 K + R ++ D+ET G ++ D ++E+ AV + ++ + P G Sbjct: 6 MKERFRGFFPVIIDVETGGFNAATDALLELAAVTTGFNEQGKLEIKNSYHFNVEPFEGAN 65 Query: 55 NSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFI 106 +AL GI D L+ S + + + HN+ FD+ F+ Sbjct: 66 IEQKALDFTGIDPDNPLRGAISEHKALKSLFKDLRTEQKDAECNRCVLVGHNSWFDLSFL 125 Query: 107 NAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 NA +R I ++P P DT S++ L C GI S + H AL D+ Sbjct: 126 NAASERVDIKRNPFHPFTSFDTASLSALML--GHTVLAQACDLAGIEFSQKEAHSALYDA 183 Query: 165 HLLSDVYIKMMVGGSQ 180 ++++ ++ +Q Sbjct: 184 TKTAELFCLLVNRANQ 199 >gi|77460741|ref|YP_350248.1| ribonuclease T [Pseudomonas fluorescens Pf0-1] gi|123603449|sp|Q3K7J7|RNT_PSEPF RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|77384744|gb|ABA76257.1| ribonuclease T [Pseudomonas fluorescens Pf0-1] Length = 224 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI A ++ + + T+ + P G P AL+ Sbjct: 31 PVVVDVETGGFNSATDALLEIAATTIAMDEKGFVYPDHTYFFRVEPFEGANVEPAALEFT 90 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 GI D L+ S + ++ + A + HN+ FD+GF+NA + R + Sbjct: 91 GIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDM 150 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ I R H A D+ ++++ Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAADIDFDGREAHSARYDTEKTAELFCG 208 Query: 174 MMVGGSQIN 182 ++ Q+ Sbjct: 209 IVNRWKQMG 217 >gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER] gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER] Length = 1461 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 6/169 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIETTGL + IIE G++ + K R Q F+ P L GIT+ Sbjct: 426 YVSFDIETTGLCPRFAEIIEYGSLPIHSNMKYGRKTQFFIKCQ-EPIKPFTENLTGITNA 484 Query: 69 FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + K + ++ N + A +AHNA+FD F+ + ++ + +IDTL Sbjct: 485 MIEKSGLELKEALQKIYNDLNGKIA--LAHNARFDFNFLKEKFRQAKIE-FPNVTVIDTL 541 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R P ++ L + R G+ H D+ +L++V++ +M Sbjct: 542 IVSRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALM 590 >gi|238898583|ref|YP_002924264.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466342|gb|ACQ68116.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 221 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G ++K D ++EI AV + + ++ + P +G PEAL + Sbjct: 26 PVVIDVETAGFNTKTDALLEIAAVTLFMDKEGWLHIEQSMHFHVEPFSGANFEPEALAFN 85 Query: 64 GITDE-FLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQRINK 115 GI L+D S + + + + + A +AHNA FD F+ +R Sbjct: 86 GIDPHSPLRDAKSEFEVLKKIFKWVQKGMKEQYCKRAIIVAHNAGFDHAFVMNAAKRTGL 145 Query: 116 --DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 +P P DT +++ + L C G+ H AL D+ + ++ + Sbjct: 146 KQNPFHPFSTFDTAALSGLAL--GQTVLAKACLTAGLNFDMSRAHSALYDTQQTARLFCE 203 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 204 LVNRWKRLG 212 >gi|209695329|ref|YP_002263258.1| ribonuclease T [Aliivibrio salmonicida LFI1238] gi|208009281|emb|CAQ79547.1| ribonuclease T [Aliivibrio salmonicida LFI1238] Length = 221 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 18/190 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVEL----LDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +SK D ++EI AV L Y K T + P G EAL Sbjct: 19 PVVIDVETAGFNSKTDALLEICAVTLAMDDEGYLKPATTIHFHVTPFEGANLEQEALDFI 78 Query: 64 GITDEF--LKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQR-- 112 GI D F L+ + E + + + A +AHNA FD F+ +R Sbjct: 79 GIRDPFSPLRGAVTEDVALKEIFKLIRKEQKQHDCRRAIMVAHNANFDHSFVMEAAERTK 138 Query: 113 INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + + P P DT +I+ + L CK G+ + H AL D+ ++++ Sbjct: 139 LKRIPFHPFCTFDTAAISGLAL--GQTVLAKACKTAGMDFDGKEAHSALYDTEKTAELFC 196 Query: 173 KMMVGGSQIN 182 ++ + Sbjct: 197 HIVNKWKDLG 206 >gi|300361735|ref|ZP_07057912.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus gasseri JV-V03] gi|300354354|gb|EFJ70225.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus gasseri JV-V03] Length = 937 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 9/162 (5%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G ++ K +T+ + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKTYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + F + +N ++AHN FD+ F+N EL +PL + IDT+ Sbjct: 68 RDVAQARDFKYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTV 124 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 +A+ P+ L L R I H + H A D+ + + Sbjct: 125 ELAQIAFPTFPSYKLRDLTARLKIK--HLNPHRADSDALVTA 164 >gi|326794723|ref|YP_004312543.1| ribonuclease T [Marinomonas mediterranea MMB-1] gi|326545487|gb|ADZ90707.1| Ribonuclease T [Marinomonas mediterranea MMB-1] Length = 224 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 20/215 (9%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGA-VELLDYSK---TNRTFQVFLCP-NGRKN 55 K++ R +V D+ET G + K D ++EI A + +D + + T + + P G Sbjct: 7 KDRFRGFLPVVIDVETAGFNEKTDALLEIAASILRMDENGDLYIHETLEYIVQPFEGANL 66 Query: 56 SPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFIN 107 AL GI + + + + + S+ + A + HN+ FD GF+N Sbjct: 67 EKAALDFTGIDPFDPDRNDMPESEALTQMLSKVRKELKSVGCKRAILVGHNSSFDHGFLN 126 Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A ++R ++P P DT S+A + + L C+ I S+ H A D+ Sbjct: 127 AAIERCSIKRNPFHPFSSFDTASLAGLAY--GQTVLAKACEAANIPFSNSQAHSAKYDTE 184 Query: 166 LLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTV 200 ++++ +++ Q+ + +E + E +++ Sbjct: 185 KTAELFCEIVNRWKQMGGWSQFSESQESAETMESL 219 >gi|330502360|ref|YP_004379229.1| ribonuclease T [Pseudomonas mendocina NK-01] gi|328916646|gb|AEB57477.1| ribonuclease T [Pseudomonas mendocina NK-01] Length = 224 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI A ++ + + T + P G AL+ Sbjct: 31 PVVVDVETGGFNSATDALLEIAATTIAMDESGFLYPDHTHFFRIEPFEGANIEQAALEFT 90 Query: 64 GI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI D L+ S E + + A + HN+ FD+GF+NA + R Sbjct: 91 GIKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAAVARCGI 150 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI + H A D+ ++++ Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIEFDGKEAHSARYDTEKTAELFCG 208 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 209 IVNRWKEMG 217 >gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens C str. JGS1495] Length = 876 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 8/172 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K IVFD+E+TG+D D II+I A++L + F+ FL +K ++ +HG Sbjct: 507 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKN--KKPVKDSYYVHGF 564 Query: 66 TDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +DE L+ + EF ++ +++ + HN ++D+ + +EL+R N Sbjct: 565 SDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFY 622 Query: 125 DTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL I RR +P + L +L K Y H+ H A+ D ++ ++ + Sbjct: 623 DTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 672 >gi|161503473|ref|YP_001570585.1| ribonuclease T [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|204927787|ref|ZP_03218988.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352852|ref|YP_002226653.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857062|ref|YP_002243713.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|160864820|gb|ABX21443.1| hypothetical protein SARI_01547 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|204323129|gb|EDZ08325.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272633|emb|CAR37543.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708865|emb|CAR33195.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627923|gb|EGE34266.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 215 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQP 72 Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109 EAL +GI L+ S + A +AHNA FD F+ A Sbjct: 73 EALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|90022074|ref|YP_527901.1| ribonuclease T [Saccharophagus degradans 2-40] gi|89951674|gb|ABD81689.1| RNAse T [Saccharophagus degradans 2-40] Length = 231 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 84/215 (39%), Gaps = 22/215 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN----RTFQVFLCP-NGRKNSP 57 R ++ D+ET G +S D ++EI AV L TF + P G Sbjct: 19 RFRGFLPVIVDVETGGFNSHTDALLEIAAVTLRMDEDGVLHRHETFDFHVDPFEGANIEQ 78 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 AL GI + + + + + IF E +AHNA FD+GF+NA Sbjct: 79 SALDFTGIDLDSDDRCAVPEDIAINEIFRSVRKAVKENGCNRAVMVAHNAHFDLGFVNAA 138 Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 R ++P P DT +++ L C+ I S+R H A D+ Sbjct: 139 SNRCDVKRNPFHPFSCFDTATLSGLAF--GHTVLARACQLAKIEFSNREAHSAAYDAEKT 196 Query: 168 SDVYIKMM-----VGGSQINFGFKTNEDRFFKEEK 197 +D++ ++ +GG + G D EE+ Sbjct: 197 ADLFCTIVNRWKDLGGWPLPVGDNLAMDETSLEEE 231 >gi|300214468|gb|ADJ78884.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius CECT 5713] Length = 929 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 11/176 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MI++ V D+ETTG D+II+ + + +K F + P G E Sbjct: 1 MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPAEV 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 KL GI ++ ++ P F + + QN ++AHN FD F+++EL+R L+ Sbjct: 57 KKLTGIKNKDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELE 114 Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++DT+ + + +P+ L + K + +SH H A D+ +++ I + Sbjct: 115 L-PMMDTVQLTQIIYPTLVSYRLIDVSKY--LQLSHIHPHKADSDTKATAELLINL 167 >gi|302875356|ref|YP_003843989.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] gi|307688937|ref|ZP_07631383.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] gi|302578213|gb|ADL52225.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] Length = 867 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 8/169 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+E+TG D D II+I A+ + + +F+ FL P +K+ + +HG +DE Sbjct: 501 IIVFDVESTGTDVTEDEIIQIAAIRINRNGEVIDSFERFLKP--KKSVKNSEHIHGFSDE 558 Query: 69 FLKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 FLK+K + EF F +NA + HN ++D+ +++E+ R+N DTL Sbjct: 559 FLKEKGEDKETVIKEFLRF--SENAVIVGHNVQYDINILSSEIHRLNLGKSKFLAFYDTL 616 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I RR +P+ + LN+L + + H A+ D D+ I+ + Sbjct: 617 DIYRRFYPNLVNHKLNTLSDIFK--TENIPSHDAMDDILATKDLLIRAL 663 >gi|260597773|ref|YP_003210344.1| ribonuclease T [Cronobacter turicensis z3032] gi|260216950|emb|CBA30569.1| Ribonuclease T [Cronobacter turicensis z3032] Length = 223 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++EI AV L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAVTLKMDADGWLTPDETLHFHVEPFEGAILQP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF E N +AHNA FD F+ A Sbjct: 73 EALAFNGIDPHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLAKACIAAGMPFDSAQAHSALYDTEQT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 ALLFCEIVNRWKRLG 205 >gi|21592760|gb|AAM64709.1| unknown [Arabidopsis thaliana] Length = 316 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 19/184 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + IV D+ETTGL KN+RIIEI A ++ TFQ + P +HGI Sbjct: 109 LTVIVSDLETTGLHRKNERIIEIAAQDIAGGGY--STFQTLVNPGVVPI--TNAHIHGIR 164 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPL 118 ++ + + P + F + + +AHN FD F+ E R + + Sbjct: 165 NDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIP 224 Query: 119 DPSRIIDTLSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++D+L +AR S + L +L Y +T H AL D LLS V+ Sbjct: 225 HNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREG-DAHRALSDVLLLSKVFQ 283 Query: 173 KMMV 176 K+ + Sbjct: 284 KLTI 287 >gi|15240411|ref|NP_198046.1| exonuclease family protein [Arabidopsis thaliana] gi|30690464|ref|NP_851082.1| exonuclease family protein [Arabidopsis thaliana] gi|30690468|ref|NP_851083.1| exonuclease family protein [Arabidopsis thaliana] gi|42573491|ref|NP_974842.1| exonuclease family protein [Arabidopsis thaliana] gi|51968684|dbj|BAD43034.1| unknown protein [Arabidopsis thaliana] gi|108385373|gb|ABF85778.1| At5g26940 [Arabidopsis thaliana] gi|332006246|gb|AED93629.1| exonuclease family protein [Arabidopsis thaliana] gi|332006247|gb|AED93630.1| exonuclease family protein [Arabidopsis thaliana] gi|332006248|gb|AED93631.1| exonuclease family protein [Arabidopsis thaliana] gi|332006249|gb|AED93632.1| exonuclease family protein [Arabidopsis thaliana] Length = 316 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 19/184 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + IV D+ETTGL KN+RIIEI A ++ TFQ + P +HGI Sbjct: 109 LTVIVSDLETTGLHRKNERIIEIAAQDIAGGGY--STFQTLVNPGVVPI--TNAHIHGIR 164 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPL 118 ++ + + P + F + + +AHN FD F+ E R + + Sbjct: 165 NDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIP 224 Query: 119 DPSRIIDTLSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++D+L +AR S + L +L Y +T H AL D LLS V+ Sbjct: 225 HNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREG-DAHRALSDVLLLSKVFQ 283 Query: 173 KMMV 176 K+ + Sbjct: 284 KLTI 287 >gi|163844775|ref|YP_001622430.1| DNA polymerase III epsilon subunit family exonuclease [Brucella suis ATCC 23445] gi|163675498|gb|ABY39608.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella suis ATCC 23445] Length = 224 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 9/218 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTCYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + T+ ARR L+ + G+ + +HGAL D++L + +Y+ + Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARTGH-RHGALEDAYLTAGLYLH----QQGV 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + K P + + R + Sbjct: 180 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 217 >gi|146306423|ref|YP_001186888.1| ribonuclease T [Pseudomonas mendocina ymp] gi|145574624|gb|ABP84156.1| RNAse T [Pseudomonas mendocina ymp] Length = 224 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI A ++ + + T + P G AL+ Sbjct: 31 PVVVDVETGGFNSATDALLEIAATTIAMDESGFLYPDHTHFFRIEPFEGANIEAAALEFT 90 Query: 64 GI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRIN- 114 GI D L+ S E + + A + HN+ FD+GF+NA + R Sbjct: 91 GIKLDHPLRMAVSEEHALGEIFKGLRKSIKSAGCKRAILVGHNSSFDLGFLNAAVARCGI 150 Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI + H A D+ ++++ Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIEFDGKEAHSARYDTEKTAELFCG 208 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 209 IVNRWKEMG 217 >gi|315652207|ref|ZP_07905202.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986] gi|315485513|gb|EFU75900.1| DNA polymerase III PolC-type [Eubacterium saburreum DSM 3986] Length = 237 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 19/232 (8%) Query: 7 MR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 MR + D+ETTG+ D+IIE+G +++++ S F + PN S + L L Sbjct: 1 MRIKDYVAIDLETTGISVSKDKIIEVGLIKVIN-SHIEEMFSCIINPN-MPVSTKILNLT 58 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + +K + + +F + + I HN FD FI E + R Sbjct: 59 GIDENEIKTARYIQDVIGDIVEFCD--GFDLIGHNTIFDYSFIKKEANNAGLNF--EKRG 114 Query: 124 IDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 IDT + ++ P + +L C +GI ++ H A D++ +Y +++ ++ Sbjct: 115 IDTYKLCKKILPPYIQKNLTDACAYFGIE--RKNMHRAFSDAYFTHMLYQEILTNFKELE 172 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKN 234 + + + K N+ + KR K ++ K + L ++ Sbjct: 173 IISEIMKVKLKK-------NVPIRKRTKEDLQKLLKCHRIVCKVNVDLLSES 217 >gi|261416372|ref|YP_003250055.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372828|gb|ACX75573.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326099|gb|ADL25300.1| exonuclease, DNA polymerase III, epsilon subunit family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 188 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 9/154 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 ++ V D+ETTG +++RI+EIG + L+D S+ T+ + P G+ +P +L GIT Sbjct: 2 LKFAVVDLETTGGHGEDNRIMEIG-IALMDGSEIVETYHALVDP-GKPITPFVRELTGIT 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 DE + +P F I Q+ ++AHN +FD ++ AEL+R +P+R + T Sbjct: 60 DEMVSGQPQFGVIAEHVAALL--QDRIFVAHNVQFDCKYMTAELKRCCIK-FNPAR-LCT 115 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159 + ++RR P L+ L + G+ + H Sbjct: 116 VKLSRRVFPGQPSYSLHKLTESLGLP--DFNHHR 147 >gi|325289205|ref|YP_004265386.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus DSM 8271] gi|324964606|gb|ADY55385.1| DNA polymerase III, epsilon subunit [Syntrophobotulus glycolicus DSM 8271] Length = 410 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 15/190 (7%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTGL K+DRIIE+ + L + ++ + P+ R P +H I+ Sbjct: 4 YAVLDLETTGLFPEKHDRIIEVAIIILNSKGEIADQYETLVNPD-RDLGP--THIHKISA 60 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P F I + + I HN +D FI E +R+ + +P ++ T Sbjct: 61 GMVSEAPKFKDIAGDIIHCLAGK--HIIGHNIAYDYRFIKHEFRRLKVEIPEP-QMSCTF 117 Query: 128 SIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFK 186 + R+ P L +LC + I + H+ H A D + + ++ ++ G K Sbjct: 118 HLTRKVEPDLPCRKLEALCSYFDIPLEHK--HAAYFDCYATAVLFQTLLKK-----HGIK 170 Query: 187 TNEDRFFKEE 196 E++ +E Sbjct: 171 ILEEKEIQEH 180 >gi|86140827|ref|ZP_01059386.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis MED217] gi|85832769|gb|EAQ51218.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis MED217] Length = 221 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 16/184 (8%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59 + + R +VFD ETTG +++ DR++ IGA+EL + +F++++ EA Sbjct: 28 LPELEEARFVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVKQEVFN--EEA 85 Query: 60 LKLHGITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 + +HGI E K K S F +F +A + H+ FD+G IN L+R+ L Sbjct: 86 VAIHGILRENRKYKKVSEEEAVKAFLEFIG--DAILVGHHVGFDIGIINYALKRLGAPKL 143 Query: 119 DPSRIIDT-LSIARRKH------PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ++ DT + R H P+ L+ LC+ I + R H A+ D+++ + + Sbjct: 144 -KNKFTDTGVLYKRTVHLVNITDPNKVYTLDDLCEELNIAKTDR--HKAMGDAYITALAF 200 Query: 172 IKMM 175 +K+M Sbjct: 201 LKVM 204 >gi|119478307|ref|ZP_01618338.1| ribonuclease T [marine gamma proteobacterium HTCC2143] gi|119448647|gb|EAW29892.1| ribonuclease T [marine gamma proteobacterium HTCC2143] Length = 235 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 20/196 (10%) Query: 5 NKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NGRKNS 56 N+ R +V D+ET G D + D I+EI A + + D ++TF + P G Sbjct: 27 NRFRGFLPVVIDVETGGFDCQTDAILEIAASTLTMNDEGIICIDKTFSFNVAPFEGANLE 86 Query: 57 PEALKLHGITD-EFLKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINA 108 P AL+ GI ++ +F++ + +Q A + HNA FD GF+ A Sbjct: 87 PAALEFTGIDPYHPFREADPEEVVFTDLLNAIRKQVKVHDCTRAVLVGHNAHFDHGFVMA 146 Query: 109 ELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 ++R ++P P + DT ++A + L C+ GI+ ++ H A D+ Sbjct: 147 AVERCQIKRNPFHPFSVFDTATLAGLAF--GQTVLAKACQTAGISFNNAEAHSAAYDTGK 204 Query: 167 LSDVYIKMMVGGSQIN 182 ++++ ++ + Sbjct: 205 TAELFCLIVNKWKDLG 220 >gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens E str. JGS1987] Length = 876 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 8/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K IVFD+E+TG+D D II+I A++L + F+ FL +K+ ++ + Sbjct: 504 EFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKN--KKSVKDSYYV 561 Query: 63 HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +DE L+ + EF ++ +++ + HN ++D+ + +EL+R N Sbjct: 562 HGFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFK 619 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL I RR +P + L +L K Y H+ H A+ D ++ ++ + Sbjct: 620 TFYDTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 672 >gi|323466410|gb|ADX70097.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus H10] Length = 927 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 9/178 (5%) Query: 6 KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K V D+ETTG K II+ G ++ K +T+ + P+ R+ + L G Sbjct: 7 KDTFAVVDLETTGTQREKGHHIIQFGC-AIIKNMKVVKTYSFMINPH-REIPQSVVNLTG 64 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I +E ++ + FS + + + ++AHN FD+ F+N EL + + L ++ I Sbjct: 65 IHNEDVQGEDDFSVYAPKIIEIL--KGTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 DT+ +A+ P+ L+ L + I H + H A D++ + + IK++ + Sbjct: 122 DTVELAKIAFPTLPSYKLSDLTAQLKIK--HLNPHKADSDAYGTAVLLIKIIHKLESL 177 >gi|23500370|ref|NP_699810.1| exonuclease [Brucella suis 1330] gi|161620685|ref|YP_001594571.1| exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC 23365] gi|254702995|ref|ZP_05164823.1| exonuclease, RNase T and DNA polymerase III [Brucella suis bv. 3 str. 686] gi|260568091|ref|ZP_05838560.1| DNA polymerase III [Brucella suis bv. 4 str. 40] gi|23463988|gb|AAN33815.1| exonuclease, putative [Brucella suis 1330] gi|161337496|gb|ABX63800.1| Exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC 23365] gi|260154756|gb|EEW89837.1| DNA polymerase III [Brucella suis bv. 4 str. 40] Length = 224 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 9/218 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLY-LIFDPRKDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 VHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLD-Q 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + T+ ARR L+ + G+ +HGAL D++L + +Y+ + Sbjct: 125 PVYCTMDGARRLWRGDSTKLDHCLAKIGLARMGH-RHGALEDAYLTAGLYLH----QQGV 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 + K P + + R + Sbjct: 180 AKPLPKINSWQPPKNLKPYPERPAGELPRRTPKRRSAA 217 >gi|326332133|ref|ZP_08198417.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] gi|325950104|gb|EGD42160.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] Length = 228 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 80/210 (38%), Gaps = 7/210 (3%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R N+ V D+ETTGLD DR+I++ ++ ++ + P G P +++ Sbjct: 23 RGNRRGFAVLDVETTGLDPYRDRVIQVAIRQIAADGTAESEWETLVNP-GAGVDPGPVEV 81 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HG+T L P F + + + + ++AHNA FD F+ E R L+ Sbjct: 82 HGLTTADLAGAPPFRDVAATIAERLAGR--VFVAHNAAFDWAFVAVESDRAGVR-LEVLD 138 Query: 123 IIDTLSIARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + T+ A+ L ++ Y + H A D+ + +++ ++ + + Sbjct: 139 WLCTMRFAKALALDVPDKSLATIAAYYAVE--QLKAHDAGDDTRVAAEILLRELADADRA 196 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 + K +P Sbjct: 197 GLMLPLVACNSARHRLKRTLRRWFSGLARP 226 >gi|51969194|dbj|BAD43289.1| unknown protein [Arabidopsis thaliana] Length = 316 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 19/184 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + IV D+ETTGL +N+RIIEI A ++ TFQ + P +HGI Sbjct: 109 LTVIVSDLETTGLHRENERIIEIAAQDIAGGGY--STFQTLVNPGVVPI--TNAHIHGIR 164 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPL 118 ++ + + P + F + + +AHN FD F+ E R + + Sbjct: 165 NDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIP 224 Query: 119 DPSRIIDTLSIARRKHPS------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++D+L +AR S + L +L Y +T H AL D LLS V+ Sbjct: 225 HNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREG-DAHRALSDVLLLSKVFQ 283 Query: 173 KMMV 176 K+ + Sbjct: 284 KLTI 287 >gi|311279484|ref|YP_003941715.1| ribonuclease T [Enterobacter cloacae SCF1] gi|308748679|gb|ADO48431.1| ribonuclease T [Enterobacter cloacae SCF1] Length = 217 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++K D ++E+ A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEVAAITLKMDEQGWLMPDTTLHFHVEPFEGANLMP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF +QN +AHNA FD F+ A Sbjct: 73 EALAFNGIDPSNPLRGAVSEYDALHAIFKAVRKGIKDQNCNRAIMVAHNATFDHSFVMAA 132 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 133 AERAGLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACIAAGMAFDGAQAHSALYDTEQT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AQLFCEIVNRWKRLG 205 >gi|168490120|ref|ZP_02714319.1| exonuclease family protein [Streptococcus pneumoniae SP195] gi|183571500|gb|EDT92028.1| exonuclease family protein [Streptococcus pneumoniae SP195] Length = 307 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 20/222 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ET + + IG V+ D + + +F + P + +HGIT E Sbjct: 5 YVALDVETA--NDFRGSVCSIGLVKFKDGNIVD-SFYTLINPEEEFDDFNIF-IHGITPE 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + DF +AH A+FD+G + Q+ D D I + Sbjct: 61 DVLDSPTFPEVRKAIVDFIGSD--IVVAHFAQFDMGALKDVYQKYELD-FDNIEYICSYR 117 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P L L K I + H H AL D+ + ++ S +F Sbjct: 118 LAKVALPGQLNYKLKRLAKNLNIELDH---HNALSDARASGLILEYLL---STNSFSDLN 171 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP------LFTRITKEELDE 223 + + K + KR K L + T+EE Sbjct: 172 AFLKEYSYNKTGLLGQYGFKRKKSYQYKENLIYQPTEEEKAA 213 >gi|161507623|ref|YP_001577577.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571] gi|160348612|gb|ABX27286.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571] Length = 927 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 9/178 (5%) Query: 6 KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K V D+ETTG K II+ G ++ K +T+ + P+ + + L G Sbjct: 7 KDTFAVVDLETTGTQREKGHHIIQFGC-AIIKNMKVVKTYSFMINPH-HEIPQSVVNLTG 64 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I +E ++ K FS + + + ++AHN FD+ F+N EL + + L ++ I Sbjct: 65 IHNEDVQGKDDFSVYAPKIIEIL--KGTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 DT+ +A+ P+ L+ L + I H + H A D++ + + IK++ + Sbjct: 122 DTVELAKIAFPTLPSYKLSDLTAQLKIK--HLNPHKADSDAYGTAVLLIKIIHKLESL 177 >gi|329920271|ref|ZP_08277055.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus iners SPIN 1401G] gi|328936316|gb|EGG32764.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus iners SPIN 1401G] Length = 933 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 9/170 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K +DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 69 QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +A+ P+ L + I H + H A D+ + + + +K++ Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKIIE 173 >gi|301300766|ref|ZP_07206950.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851616|gb|EFK79316.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 929 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 11/176 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MI++ V D+ETTG D+II+ + + +K F + P G E Sbjct: 1 MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPVEV 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 KL GI D+ ++ P F + + QN ++AHN FD F+++EL+R L+ Sbjct: 57 KKLTGIKDKDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELE 114 Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++DT+ + + +P+ L + K + +SH H A D+ +++ I + Sbjct: 115 L-PMMDTVQLTQIIYPTLVSYRLIDISKY--LQLSHIHPHKADSDTKATAELLINL 167 >gi|150007345|ref|YP_001302088.1| DNA polymerase III subunit epsilon [Parabacteroides distasonis ATCC 8503] gi|255014024|ref|ZP_05286150.1| DNA polymerase III epsilon chain [Bacteroides sp. 2_1_7] gi|256839636|ref|ZP_05545145.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13] gi|262382080|ref|ZP_06075218.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B] gi|298375333|ref|ZP_06985290.1| exonuclease [Bacteroides sp. 3_1_19] gi|301310653|ref|ZP_07216592.1| exonuclease [Bacteroides sp. 20_3] gi|149935769|gb|ABR42466.1| DNA polymerase III epsilon chain [Parabacteroides distasonis ATCC 8503] gi|256738566|gb|EEU51891.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13] gi|262297257|gb|EEY85187.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B] gi|298267833|gb|EFI09489.1| exonuclease [Bacteroides sp. 3_1_19] gi|300832227|gb|EFK62858.1| exonuclease [Bacteroides sp. 20_3] Length = 256 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 10/177 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + + FD+ETTG++ DRI+EI V++ K T + P G PE+ Sbjct: 1 MQLNLRNPLVFFDLETTGINIVKDRIVEISYVKVFPNGK-EETKTRRINP-GMPIPPEST 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118 +HGITDE +KD P+F I + + +N +FD+ + E R D L Sbjct: 59 AIHGITDEDVKDCPTFKEIAKSLATQI--EGCDLAGYNSNRFDIPMLAEEFLRAGVDIDL 116 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + ID +I H + L++ K Y S + H A D+ +V + Sbjct: 117 NRRKFIDVQTI---FHKMEQRTLSAAYKFY-CNKSLENAHTAEADTLATYEVLKAQL 169 >gi|325978714|ref|YP_004288430.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178642|emb|CBZ48686.1| ATP-dependent DNA helicase DinG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 827 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 87/182 (47%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M++ N + + D+E TG + II++G V +++ + +T+Q + P+ S + Sbjct: 1 MMQVNSQKYAIVDLEATGAHAM-AEIIQVGIV-IIENDEIVKTYQTDVNPHEA-LSEHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITDE L P FS + E + ++ ++AHN KFD + +L + P Sbjct: 58 NLTGITDEQLAKAPDFSQVAQEVFSLI--EDCVFVAHNVKFDANLLAEQLFMEGYELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P+ + L + + + H A+ D++ + +++K+ Sbjct: 116 --RVDTVELAQVFYPTFEKYSLGN--LADALALDLADAHTAISDAYATTQLFLKLKAKMK 171 Query: 180 QI 181 + Sbjct: 172 SL 173 >gi|330973093|gb|EGH73159.1| ribonuclease T [Pseudomonas syringae pv. aceris str. M302273PT] Length = 213 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + K T+ + P G AL+ Sbjct: 20 PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFT 79 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 GI D L+ S + ++ + A + HNA FD+GF+NA + R+ Sbjct: 80 GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 139 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 140 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 197 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 198 IVNRWKEMG 206 >gi|322650293|gb|EFY46707.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 205 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 17/197 (8%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKN 55 M + +V D+ET G ++K D ++EI A+ L + + T + P G Sbjct: 1 MRPFSWFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANL 60 Query: 56 SPEALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 PEAL +GI L+ S + A +AHNA FD F+ Sbjct: 61 QPEALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMM 120 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A R + ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 121 AAAGRASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTE 178 Query: 166 LLSDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 179 RTAVLFCEIVNRWKRLG 195 >gi|291544952|emb|CBL18061.1| DNA polymerase III, alpha subunit (gram-positive type) [Ruminococcus sp. 18P13] Length = 176 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 9/170 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 IVFD+ET + NDR+ IG + D F + P KL GI + Sbjct: 4 YIVFDVETP--NRSNDRMSAIGISAIKDNKIVANYFS-LVDPETH-FDYFNTKLTGIDAD 59 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K P+F+ ++ + ++ +AHNA F++ + A L+ ++ + + Sbjct: 60 KVKGAPNFAELWKKIDPIMSKG--ILVAHNAVFNMSVLRACLRDYGISWKPTAKYLCMVR 117 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 I RR P +++LN +C YGI + H H A DSH +++ ++ + G Sbjct: 118 IGRRVLPDMKHNLNVMCDHYGIALDH---HQADSDSHACAEILLRYIESG 164 >gi|228477577|ref|ZP_04062210.1| DnaQ family exonuclease/DinG family helicase [Streptococcus salivarius SK126] gi|228250721|gb|EEK09919.1| DnaQ family exonuclease/DinG family helicase [Streptococcus salivarius SK126] Length = 828 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M KN + + D+E T S II++G V + + + F + P+ ++ + Sbjct: 1 MSEKNTNKYAIVDLEATSASS-TASIIQVGIVIMQNGQVIDE-FASDVNPH-QELDDHII 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ ++ ++AHN KFD + L + P Sbjct: 58 HLTGITDQQLAQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLLAEALFMEGFELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ +P+ + L+ L K + ++ H A+ D+ + +M Sbjct: 116 --RVDTVELAQVFYPTLEQYKLSHLSKVLNLDLA--QAHTAIEDARATGQLLFHLM 167 >gi|95930297|ref|ZP_01313034.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] gi|95133549|gb|EAT15211.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM 684] Length = 193 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 10/189 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGLD D II AV++ T + ++ ++ P PE+++ HGITD+ Sbjct: 6 FCIVDLETTGLDLTTDTIINAAAVKIKKGRIT-KIYETYVKPPT-SIPPESIQFHGITDD 63 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L DKPS + EF F ++ H+ FD+ ++ L+ L+ + +DT+ Sbjct: 64 MLVDKPSIGEVLPEFMTFIG--DSMITGHHINFDLKMLDRHLRENYDCNLEGAPWLDTML 121 Query: 129 IARR-KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + + ++ L+ L Y I R H AL DS + V+++++ +++ ++T Sbjct: 122 LHKLVMENNTSTQLDDLLNVYCIDCEQR--HRALGDSIATAKVFLRIL---HELSNSYQT 176 Query: 188 NEDRFFKEE 196 D + ++ Sbjct: 177 LNDLYRAQQ 185 >gi|220904848|ref|YP_002480160.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869147|gb|ACL49482.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 176 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 10/169 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET+G + + + + ++ + F + P + ++HG+T Sbjct: 10 VAIDFETSGYAAHSACAVGLA---RIEDGRVTEQFYSLVRPPSSRVL--FTEIHGLTWPM 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 LK+ P F ++ + F +AHNA FD + A + + + TL Sbjct: 65 LKNAPVFGDVWPQMESFMKGAG-VLLAHNASFDRRVLLACCREAGAG-VPEQHFLCTLKG 122 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 ARR P LN +C+ +GI + H H A D+ ++VY+ + G Sbjct: 123 ARRSLPLPSKKLNHVCEHFGIALEH---HHAGSDAAACAEVYLHLRALG 168 >gi|312875685|ref|ZP_07735686.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2053A-b] gi|311088939|gb|EFQ47382.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2053A-b] Length = 933 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 9/170 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K +DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 69 QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +A+ P+ L + I H + H A D+ + + + +K++ Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKIIE 173 >gi|227904085|ref|ZP_04021890.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796] gi|227868104|gb|EEJ75525.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796] Length = 927 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 5 NKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 NK V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L Sbjct: 6 NKDTFAVVDLETTGTQRENGHHIIQFGC-AIIKNMKVVKTYSFLINPH-REIPQSVVNLT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++E ++ + F + Q+ ++AHN FD+ F+N EL + D L ++ Sbjct: 64 GISNEDVQKQKDFDYYAPKIVSIL--QDTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKA 120 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDT+ +A+ P+ L L + I H + H A D++ + + I+++ Sbjct: 121 IDTVELAKIAFPTLPSYKLGDLTSQLKIK--HLNPHKADSDAYGTAVLLIEII 171 >gi|58337449|ref|YP_194034.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM] gi|58254766|gb|AAV43003.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM] Length = 927 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 5 NKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 NK V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L Sbjct: 6 NKDTFAVVDLETTGTQRENGHHIIQFGC-AIIKNMKVVKTYSFLINPH-REIPQSVVNLT 63 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI++E ++ + F + Q+ ++AHN FD+ F+N EL + D L ++ Sbjct: 64 GISNEDVQKQKDFDYYAPKIVSIL--QDTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKA 120 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 IDT+ +A+ P+ L L + I H + H A D++ + + I+++ Sbjct: 121 IDTVELAKIAFPTLPSYKLGDLTSQLKIK--HLNPHKADSDAYGTAVLLIEII 171 >gi|90961663|ref|YP_535579.1| ATP-dependent helicase DinG [Lactobacillus salivarius UCC118] gi|90820857|gb|ABD99496.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius UCC118] Length = 929 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 11/176 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 MI++ V D+ETTG D+II+ + + +K F + P G E Sbjct: 1 MIKERI--YAVVDLETTGPKQDGSDKIIQFSC-DFVQSNKIVNHFSTLINP-GMPIPVEV 56 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 KL GI D+ ++ P F + + QN ++AHN FD F+++EL+R L+ Sbjct: 57 KKLTGIKDKDVRYAPYFDEVAGTIYAML--QNTTFVAHNVNFDYSFLSSELERAGYPELE 114 Query: 120 PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++DT+ + + +P+ L + K + +SH H A D+ +++ I + Sbjct: 115 L-PMMDTVQLTQIIYPTLVSYRLIDISKY--LQLSHIHPHKADSDTKATAELLINL 167 >gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101] gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101] Length = 870 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 8/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K IVFD+E+TG+D D II+I A++L + F+ FL +K+ ++ + Sbjct: 498 EFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKNVEVVDKFEKFLKN--KKSVKDSYYV 555 Query: 63 HGITDEFLKDKPSFSS-IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +DE L+ + EF ++ +++ + HN ++D+ + +EL+R N Sbjct: 556 HGFSDEMLQRIGEEKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFK 613 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL I RR +P + L +L K Y H+ H A+ D ++ ++ + Sbjct: 614 TFYDTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 666 >gi|325912075|ref|ZP_08174473.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners UPII 143-D] gi|325476025|gb|EGC79193.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners UPII 143-D] Length = 933 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K +DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 69 QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ P+ L + I H + H A D+ + + + +K++ Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKII 172 >gi|312871734|ref|ZP_07731822.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 3008A-a] gi|311092676|gb|EFQ51032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 3008A-a] Length = 933 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K +DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 69 QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ P+ L + I H + H A D+ + + + +K++ Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKII 172 >gi|228470614|ref|ZP_04055471.1| exonuclease [Porphyromonas uenonis 60-3] gi|228307741|gb|EEK16717.1| exonuclease [Porphyromonas uenonis 60-3] Length = 189 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 8/173 (4%) Query: 4 KNKMRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 N + I D ET TG + I E+G + + + T + P G + S ++ Sbjct: 1 MNTLDFIAIDFETATG---QRTSICEVGICLVRNG-EIAETRSWLVQPEGNRYSYWNMQC 56 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI E K PSF+ ++ E + + + A +AHN FD + Q L + Sbjct: 57 HGIRPEDTKRAPSFAEVWQEIAEQYIGEGALLVAHNVPFDRSCLEQAAQLYEL-TLPELQ 115 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +L AR+ + + L LC++ I H A D+ + + +Y++ + Sbjct: 116 WDCSLRRARQIYDYGCHTLAYLCEQLSIP--EGRHHRAGDDAEMCARLYLREL 166 >gi|312874151|ref|ZP_07734185.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2052A-d] gi|311090221|gb|EFQ48631.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2052A-d] Length = 933 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K +DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 69 QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ P+ L + I H + H A D+ + + + +K++ Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKII 172 >gi|223933999|ref|ZP_03625955.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis 89/1591] gi|223897336|gb|EEF63741.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis 89/1591] Length = 822 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 10/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E TG + +II+IG V + + + ++ + P L GITD Sbjct: 12 RYAVVDLEATGT-GTDAKIIQIGIVLVENGEIID-SYATDINP-YELLDDHIKNLTGITD 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P F + S +D +A ++AHN KFD + L + L P +DT+ Sbjct: 69 QQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTP--RVDTV 124 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +++ P+ + L +L + + + H A+ D+ + + IK+ Sbjct: 125 ELSQLFFPTFEKYSLGNLAEHLELGLD--QAHTAISDALATARLLIKI 170 >gi|262365378|gb|ACY61935.1| DNA polymerase III, epsilon chain [Yersinia pestis D182038] Length = 128 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 53/114 (46%), Positives = 75/114 (65%), Gaps = 8/114 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + RIIEIGAVE+++ T R F V++ P+ R PEA + Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPD-RLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 HGI+DEFL DKP+F+ I EF DF + AE + HNA FD+GF++ E + + +D Sbjct: 66 HGISDEFLADKPTFADITPEFLDFI--RGAELVIHNAAFDIGFMDYEFRMLQQD 117 >gi|240136987|ref|YP_002961456.1| hypothetical protein MexAM1_META1p0217 [Methylobacterium extorquens AM1] gi|240006953|gb|ACS38179.1| hypothetical protein, putative exonuclease domain [Methylobacterium extorquens AM1] Length = 297 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 10/212 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET + + D +G + ++ + R + P + SP +++HGI Sbjct: 1 MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P+F + +EF + +AHNA FD+G + A L +P+ T Sbjct: 58 PADVRDAPTFPEVIAEFLP--DLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L IARR P + L + R GI H H A D+ +++ + + + Sbjct: 115 LQIARRVFPDPAGHGLAKVASRLGIRFEH---HDAGEDAFACAEIALAALRETGAADIAD 171 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 T P + + R + Sbjct: 172 LARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203 >gi|116696325|ref|YP_841901.1| putative exonuclease [Ralstonia eutropha H16] gi|113530824|emb|CAJ97171.1| putative exonuclease [Ralstonia eutropha H16] Length = 220 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 9/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +VFDIETTGLDS+ I+EIGA+ + S + TFQV + P+ RK + +L GIT Sbjct: 51 RFVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVLVKPS-RKVPKKITELTGITP 109 Query: 68 EFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + + S S +F F N ++ NA+FD+ FI+ + + +P Sbjct: 110 EMIEAEGVSLESAVQDFAKFAG--NLRLVSFNAEFDMAFISKAAGKSSITFANPVS--CA 165 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L ++RR P + L + K + S H AL D + VY Sbjct: 166 LKMSRRAWPDRKSYRLAEIAKDGNLDTSD--MHRALGDCQRAAIVYCA 211 >gi|302191304|ref|ZP_07267558.1| Rad3-related DNA helicase [Lactobacillus iners AB-1] Length = 933 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 9/170 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K +DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 69 QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +A+ P+ L + I H + H A D+ + + + +K++ Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKIIE 173 >gi|302333559|gb|ADL23752.1| Exonuclease, RNase T and DNA polymerase III [Staphylococcus aureus subsp. aureus JKD6159] Length = 184 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V+++D T TF + P S + +K+HGI E Sbjct: 6 FVALDFETA--NGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQDY-FSQQNIKVHGIQPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P+F +F F + +AHNA FD+ ++ +Q I P + Sbjct: 62 DVENAPTFDYVFPYMMQFIA--DLPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+R S R L + + Y + H AL D+ + + +++ Sbjct: 119 LAKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDAKACAMITFRLL 163 >gi|315653552|ref|ZP_07906472.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195] gi|315488914|gb|EFU78556.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195] Length = 936 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 9/170 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K +DRII+ G + D T +T+ + P + L GI++ Sbjct: 14 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 72 QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 128 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +A+ P+ L + I H + H A D+ + + + +K++ Sbjct: 129 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKIIE 176 >gi|312872972|ref|ZP_07733032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2062A-h1] gi|311091494|gb|EFQ49878.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF 2062A-h1] Length = 933 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K +DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 69 QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ P+ L + I H + H A D+ + + + +K++ Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKII 172 >gi|259500615|ref|ZP_05743517.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335] gi|259167999|gb|EEW52494.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335] Length = 936 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 9/170 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K +DRII+ G + D T +T+ + P + L GI++ Sbjct: 14 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 71 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 72 QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 128 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +A+ P+ L + I H + H A D+ + + + +K++ Sbjct: 129 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKIIE 176 >gi|332667256|ref|YP_004450044.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM 1100] gi|332336070|gb|AEE53171.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis DSM 1100] Length = 282 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 7/163 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 FDIE TGL+ DRI++I ++ + + + + P G S EA+ +HGI + Sbjct: 10 CFFDIEATGLNVVRDRIVQIAIIKYFKDGREPQELSLMINP-GIPISLEAILVHGIQPKD 68 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + +KP+F + + WDF NA+ +N +FD+ + E R+ + R ++ Sbjct: 69 VANKPTFQQLAQKIWDFIG--NADLAGYNSNRFDIPMLMEEFARVGMEFDVTKRR--SID 124 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + R + L + K Y H H A+ D DV+ Sbjct: 125 VQRIFYKMEPRTLKAALKFY-CEKEHEDAHDAMADVRATIDVF 166 >gi|322615086|gb|EFY12009.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619925|gb|EFY16798.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622237|gb|EFY19082.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627759|gb|EFY24549.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632896|gb|EFY29640.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636613|gb|EFY33316.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641194|gb|EFY37836.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644871|gb|EFY41404.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322655865|gb|EFY52167.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660193|gb|EFY56432.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665242|gb|EFY61430.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669499|gb|EFY65647.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673425|gb|EFY69527.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677353|gb|EFY73417.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679984|gb|EFY76023.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687456|gb|EFY83428.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194090|gb|EFZ79289.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198572|gb|EFZ83673.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202899|gb|EFZ87934.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208618|gb|EFZ93556.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211154|gb|EFZ96001.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217595|gb|EGA02310.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218944|gb|EGA03454.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227078|gb|EGA11258.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229397|gb|EGA13520.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236896|gb|EGA20968.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240342|gb|EGA24386.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242669|gb|EGA26690.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250235|gb|EGA34126.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252445|gb|EGA36292.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256463|gb|EGA40196.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261433|gb|EGA45016.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267209|gb|EGA50694.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272728|gb|EGA56133.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 215 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 77/195 (39%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQP 72 Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109 EAL +GI L+ S + A +AHNA FD F+ A Sbjct: 73 EALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 R + ++P P DT +++ + L+ C G+ H AL D+ Sbjct: 133 AGRASLKRNPFHPFVTFDTAALSGLAL--GQTVLSKACLAAGMEFDGEKAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|188586746|ref|YP_001918291.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351433|gb|ACB85703.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 864 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 91/177 (51%), Gaps = 12/177 (6%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + + +VFD+ETTGLD+ D IIE+ A++ + F +L + K E+ ++ Sbjct: 494 KFEQNKLVVFDVETTGLDTTKDEIIELAALKAGKDGVVDE-FHEYLRNS--KPVGESFQV 550 Query: 63 HGITDEFL--KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 HGI+D+ L + KP S + F +F + + + + HN +D+ + + +++ L+ Sbjct: 551 HGISDQVLLEQGKPPEKS-LASFTNFID--DCDLVGHNVNYDITMVENQCKKLLNQDLEL 607 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 DT+ I+RR P + +L SLC+ + IS + H A+ D ++ ++ Sbjct: 608 HGY-DTVDISRRYFPRLEKYNLESLCE--DLQISSKPTHRAMDDVEATFELLQILLE 661 >gi|296089746|emb|CBI39565.3| unnamed protein product [Vitis vinifera] Length = 332 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 85/206 (41%), Gaps = 23/206 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD ETTGL NDRIIEIG +L N TFQ + P +P +HGIT Sbjct: 129 IVFDTETTGLSRANDRIIEIGLQDL--GGGENSTFQTLVNPERIVPNP---HVHGITTYM 183 Query: 70 L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121 + D P + + + + W+AHN + FDV F+ E R N + Sbjct: 184 VNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNW 243 Query: 122 RIIDTLSIARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +DTL +AR S+ + L +L + Y I + H L D + LS V + Sbjct: 244 RFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVG-PAHRVLSDVYTLSQVLQMLT 302 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVP 201 + DR F P Sbjct: 303 FN---LKVSVANLLDRSFTASDIINP 325 >gi|225450649|ref|XP_002282861.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] gi|225450651|ref|XP_002282855.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] Length = 337 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 85/206 (41%), Gaps = 23/206 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD ETTGL NDRIIEIG +L N TFQ + P +P +HGIT Sbjct: 134 IVFDTETTGLSRANDRIIEIGLQDL--GGGENSTFQTLVNPERIVPNP---HVHGITTYM 188 Query: 70 L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121 + D P + + + + W+AHN + FDV F+ E R N + Sbjct: 189 VNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNW 248 Query: 122 RIIDTLSIARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +DTL +AR S+ + L +L + Y I + H L D + LS V + Sbjct: 249 RFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVG-PAHRVLSDVYTLSQVLQMLT 307 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVP 201 + DR F P Sbjct: 308 FN---LKVSVANLLDRSFTASDIINP 330 >gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13] gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str. 13] Length = 870 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 8/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K IVFD+E+TG+D D II+I A++L + F+ FL +K ++ + Sbjct: 498 EFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKN--KKPVKDSYYV 555 Query: 63 HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +DE L+ + EF ++ +++ + HN ++D+ + +EL+R N Sbjct: 556 HGFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFK 613 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL I RR +P + L +L K Y H+ H A+ D ++ ++ + Sbjct: 614 TFYDTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 666 >gi|332756741|gb|EGJ87088.1| exonuclease family protein [Shigella flexneri 4343-70] gi|333004838|gb|EGK24360.1| exonuclease family protein [Shigella flexneri K-218] Length = 220 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVN-PMSLLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|269139030|ref|YP_003295731.1| ribonuclease T [Edwardsiella tarda EIB202] gi|267984691|gb|ACY84520.1| ribonuclease T [Edwardsiella tarda EIB202] gi|304558963|gb|ADM41627.1| Ribonuclease T [Edwardsiella tarda FL6-60] Length = 254 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G D+ + ++EI AV L + +T++ + P G SP Sbjct: 46 RFRGFYPVVIDVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHITPFEGAVLSP 105 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF +Q A +AHNA FD F+ A Sbjct: 106 EALAFNGIDPHNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMAA 165 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R ++P P DT +++ + L C I H AL D+ Sbjct: 166 AERAGLKRNPFHPFATFDTAALSGLVL--GQTVLAKACLSAEIPFDSAQAHSALYDTQQT 223 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 224 ATLFCELVNRWKRLG 238 >gi|311110686|ref|ZP_07712083.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri MV-22] gi|311065840|gb|EFQ46180.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri MV-22] Length = 937 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 9/162 (5%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G ++ K +T+ + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKTYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + F+ + +N ++AHN FD+ F+N EL +PL + IDT+ Sbjct: 68 RDVAQARDFNYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTV 124 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 +A+ P+ L L R I H + H A D+ + + Sbjct: 125 ELAQIAFPTFPSYKLRDLTARLKIK--HLNPHRADSDALVTA 164 >gi|146386891|pdb|2IS3|A Chain A, Crystal Structure Of Escherichia Coli Rnase T gi|146386892|pdb|2IS3|B Chain B, Crystal Structure Of Escherichia Coli Rnase T gi|146386893|pdb|2IS3|C Chain C, Crystal Structure Of Escherichia Coli Rnase T gi|146386894|pdb|2IS3|D Chain D, Crystal Structure Of Escherichia Coli Rnase T Length = 215 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 77/195 (39%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G ++K D ++EI A+ L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNAKTDALLEIAAITLKXDEQGWLXPDTTLHFHVEPFVGANLQP 72 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + IF +AHNA FD F A Sbjct: 73 EALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIXVAHNANFDHSFXXAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ G H AL D+ Sbjct: 133 AERASLKRNPFHPFATFDTAALAGLAL--GQTVLSKACQTAGXDFDSTQAHSALYDTERT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 AVLFCEIVNRWKRLG 205 >gi|72161118|ref|YP_288775.1| exonuclease [Thermobifida fusca YX] gi|71914850|gb|AAZ54752.1| exonuclease [Thermobifida fusca YX] Length = 516 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 79/213 (37%), Gaps = 19/213 (8%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + V D+ETTGL+ K R+ EI V + + + P + HGI Sbjct: 19 LTYAVLDLETTGLNPKRGARVCEIAVVRMRGDGTVLDEYSTLVNPGSSIRN---SAFHGI 75 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 TD ++K PSF + + + + A + H F+ F+ AE R+ PL + Sbjct: 76 TDTWVKTAPSFDQVAGDLLAYLD--GAIVVGHKLDFEEKFLAAEFARLGV-PLTGIPGLC 132 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 TL AR + L L ++H AL D+ L+ V +++ Q Sbjct: 133 TLVAARYQLDRYGYRLAHL-HHLLTGRWPTAEHSALGDARSLAAVLTELINAAPQ----- 186 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 + T + L R + + R Sbjct: 187 ------PLHWDGPTPAPLPQLPRTRIIAPRAAA 213 >gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens B str. ATCC 3626] Length = 870 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 8/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K IVFD+E+TG+D D II+I A++L + F+ FL +K ++ + Sbjct: 498 EFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKN--KKPVKDSYYV 555 Query: 63 HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +DE L+ + EF ++ +++ + HN ++D+ + +EL+R N Sbjct: 556 HGFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFK 613 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL I RR +P + L +L K Y H+ H A+ D ++ ++ + Sbjct: 614 TFYDTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 666 >gi|116629671|ref|YP_814843.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323] gi|238854243|ref|ZP_04644587.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 202-4] gi|116095253|gb|ABJ60405.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323] gi|238833054|gb|EEQ25347.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 202-4] Length = 937 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 9/162 (5%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G ++ K +T+ + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKTYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + F+ + +N ++AHN FD+ F+N EL +PL + IDT+ Sbjct: 68 RDVAQARDFNYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTV 124 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 +A+ P+ L L R I H + H A D+ + + Sbjct: 125 ELAQIAFPTFPSYKLRDLTARLKIK--HLNPHRADSDALVTA 164 >gi|330811888|ref|YP_004356350.1| exonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379996|gb|AEA71346.1| Putative exonuclease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 203 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 9/175 (5%) Query: 8 RKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V L +R +Q + G + +L GI+ Sbjct: 3 RIAVIDFETTGITPSSSCRATEIAVVMLEQGRIVDR-YQSLMN-AGVRVPAFIEQLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L+ PS + +E +F +AHNA FD F + EL RI + L + Sbjct: 61 NAMLRSAPSAEKVMNEVNEFVGI--TPLLAHNAAFDQKFWDFELGRIKRTRLQNFA--CS 116 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 L +ARR P + + L +L G+ H A+ D+ + +++ + Q Sbjct: 117 LLLARRLMPAAPNHKLGTLNTFAGLP-HTGQAHRAMADAEMAANLTAHLASQLRQ 170 >gi|110805789|ref|YP_689309.1| exodeoxyribonuclease X [Shigella flexneri 5 str. 8401] gi|110615337|gb|ABF04004.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 220 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVN-PMSLLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRCVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens D str. JGS1721] gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens D str. JGS1721] Length = 876 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 8/172 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K IVFD+E+TG+D D II+I A++L + F+ FL +K ++ +HG Sbjct: 507 KENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKN--KKPVKDSYYVHGF 564 Query: 66 TDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +DE L+ + EF ++ +++ + HN ++D+ + +EL+R N Sbjct: 565 SDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFY 622 Query: 125 DTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL I RR +P + L +L K Y H+ H A+ D ++ ++ + Sbjct: 623 DTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 672 >gi|110634574|ref|YP_674782.1| DNA polymerase III, epsilon subunit [Mesorhizobium sp. BNC1] gi|110285558|gb|ABG63617.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1] Length = 498 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FD ETTGLD++ R++++ V + + + +F+ + P G P+++++HGITD Sbjct: 16 VAFDTETTGLDTRTARVVQVAGVAISRGAVRQDESFESLVHP-GMSIPPDSIRIHGITDG 74 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L++ P+F++++ F F + I + FD+ I E R P R + + Sbjct: 75 MLREAPAFAAVWRSFEMFRGVR--PLIGYAVGFDLAIIEREAARAGIRRKRP-RTLCVRT 131 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R + R + L +L G I R H AL D+ + V+ ++ Sbjct: 132 LSRIVNRDLRGHSLEALAAWLGFEIIGR--HQALDDAMAAAKVFTGLL 177 >gi|89098849|ref|ZP_01171730.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911] gi|89086525|gb|EAR65645.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911] Length = 243 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 9/174 (5%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59 + ++M IV DIETTG + D II IGAV++ + + ++ F + + SP+ Sbjct: 52 VPLDRMEAIVMDIETTGFFPDQGDEIISIGAVKIENGTINEDKKFYSLIRYE-KTLSPQI 110 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 +L G+ LK+ P + EF+ F + IAH+A+ + F+ + K PL Sbjct: 111 EQLTGLRGSQLKEAPPLPEVLIEFFKFCEAR--TIIAHHARHEKSFLQNASWKHFKAPL- 167 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 RIIDT + R P L LC GI + R H AL D+ L ++++ Sbjct: 168 KHRIIDTSFLYRIAEPELNLQRLEDLCSHNGIPVMER--HHALEDARLAAELWC 219 >gi|146300234|ref|YP_001194825.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] gi|146154652|gb|ABQ05506.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae UW101] Length = 209 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 15/187 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60 I + R +V D ETTG D +NDRI+ IGA+ L + +F+++L + S Sbjct: 18 ITIEETRFVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYLHQDHYDKS--TA 75 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI + L +P+ +F DF ++ IAH+ FDV IN L+R L Sbjct: 76 QIHGILKDLLVKRPTELEALQQFLDFLG--DSIIIAHHTVFDVTMINKALERNGLPQL-T 132 Query: 121 SRIID-------TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++ +D TL + L+ L ++ I S + +H AL D+++ + ++K Sbjct: 133 NKTLDTAYLYKKTLIQSHLFERKDHYTLDDLADKFDI--SKKDRHTALGDAYITAIAFLK 190 Query: 174 MMVGGSQ 180 ++ + Sbjct: 191 IVKKLRE 197 >gi|312278202|gb|ADQ62859.1| ATP-dependent DNA helicase [Streptococcus thermophilus ND03] Length = 828 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K+ + + D+E T S II++G V + + + F + P+ +K + Sbjct: 1 MSEKSTNKYAIVDLEATSASS-TACIIQVGIVIMQNGRVIDE-FASDVNPH-QKLDNHIV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ ++ ++AHN KFD + L + P Sbjct: 58 HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLLAEALFMEGFELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P+ + +L+ L + + ++ H A+ D+ + + +M + Sbjct: 116 --RVDTVELAQVFYPTLEQYNLSYLSRVLNLDLA--QAHTAIEDARATGKLLLHLMDKIA 171 Query: 180 QI 181 + Sbjct: 172 SL 173 >gi|302023531|ref|ZP_07248742.1| ATP-dependent DNA helicase [Streptococcus suis 05HAS68] Length = 822 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 10/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E TG + +II+IG V + + + ++ + P L GITD Sbjct: 12 RYAVVDLEATGT-GTDAKIIQIGIVLVENGEIID-SYATDINP-YELLDDHIKNLTGITD 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P F + S +D +A ++AHN KFD + L + L P +DT+ Sbjct: 69 QQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTP--RVDTV 124 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +++ P+ + L +L + + + H A+ D+ + + IK+ Sbjct: 125 ELSQLFFPTFEKYSLGNLAEHLELGLD--QAHTAISDAMATARLLIKI 170 >gi|253751390|ref|YP_003024531.1| ATP-dependent DNA helicase [Streptococcus suis SC84] gi|253753291|ref|YP_003026431.1| ATP-dependent DNA helicase [Streptococcus suis P1/7] gi|253755878|ref|YP_003029018.1| ATP-dependent DNA helicase [Streptococcus suis BM407] gi|251815679|emb|CAZ51270.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84] gi|251818342|emb|CAZ56163.1| putative ATP-dependent DNA helicase [Streptococcus suis BM407] gi|251819536|emb|CAR45129.1| putative ATP-dependent DNA helicase [Streptococcus suis P1/7] Length = 822 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 10/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E TG + +II+IG V + + + ++ + P L GITD Sbjct: 12 RYAVVDLEATGT-GTDAKIIQIGIVLVENGEIID-SYATDINP-YELLDDHIKNLTGITD 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P F + S +D +A ++AHN KFD + L + L P +DT+ Sbjct: 69 QQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTP--RVDTV 124 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +++ P+ + L +L + + + H A+ D+ + + IK+ Sbjct: 125 ELSQLFFPTFEKYSLGNLAEHLELGLD--QAHTAISDAMATARLLIKI 170 >gi|228476288|ref|ZP_04060989.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis SK119] gi|314936052|ref|ZP_07843401.1| exonuclease [Staphylococcus hominis subsp. hominis C80] gi|228269571|gb|EEK11077.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis SK119] gi|313655869|gb|EFS19612.1| exonuclease [Staphylococcus hominis subsp. hominis C80] Length = 185 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 13/187 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D ET + K I +G V+++D TF + P+ S + +HGI + Sbjct: 6 FIALDFETA--NKKRTSICSVGMVKVVDNEIV-ETFYTLVNPHDY-FSETHIHVHGIHPK 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +KD P F +F F N+ +AHNA FD+G ++ L+ +N + + Sbjct: 62 DVKDAPDFKEVFPYMLQFINQ--LPVVAHNAAFDMGVLHQSLKHLNI-AVPSLTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM----VGGSQINFG 184 +ARR + R L L Y + H AL D+ + + +++ S + F Sbjct: 119 LARRTIKAYRYGLKHLMNHYNLNF--HGHHDALNDAKACAMITYRLLKHYDSLQSVLQFH 176 Query: 185 FKTNEDR 191 K +DR Sbjct: 177 GKNLKDR 183 >gi|330989528|gb|EGH87631.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M301315] Length = 225 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + + T+ + P G P AL+ Sbjct: 32 PVVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANVEPAALEFT 91 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 GI D L+ S + ++ + A + HNA FD+GF+NA + R+ Sbjct: 92 GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 210 IVNRWKEMG 218 >gi|229552292|ref|ZP_04441017.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus rhamnosus LMS2-1] gi|258539701|ref|YP_003174200.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus rhamnosus Lc 705] gi|229314364|gb|EEN80337.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus rhamnosus LMS2-1] gi|257151377|emb|CAR90349.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus rhamnosus Lc 705] Length = 933 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 24/236 (10%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K DR+I+ G L+ + K +T + P+ R +L GI+ Sbjct: 7 FAVVDLETTGTSVKDGDRMIQFGC-ALVRHGKIIQTISQMINPD-RSVPQTIQRLTGISP 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L P F + + ++AHN FD F+NAE +RI L IDT+ Sbjct: 65 ERLVAAPYFDEVAPALHQVLTK--TVFVAHNVNFDYPFLNAEFERIGLPKL-QLEAIDTV 121 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI----N 182 +A+ P S L+ L + I H + H A D+ + + +++ + Sbjct: 122 ELAQVLLPEISSFRLSDLTTHFAIQ--HDNPHQADSDATSTAKLLLQLKARFQALPTPTQ 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRD--------KPLFTR---ITKEELDEHDKT 227 D F +E + I+ R PL R T +L Sbjct: 180 QALIQRHDGFIRETGDYLKMIASPPRPLKKEFVQVGPLVLRRPMTTPTDLAAAGAY 235 >gi|330832545|ref|YP_004401370.1| Rad3-related DNA helicase [Streptococcus suis ST3] gi|329306768|gb|AEB81184.1| Rad3-related DNA helicase [Streptococcus suis ST3] Length = 837 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 10/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E TG + +II+IG V + + + ++ + P L GITD Sbjct: 27 RYAVVDLEATGT-GTDAKIIQIGIVLVENGEIID-SYATDINP-YELLDDHIKNLTGITD 83 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P F + S +D +A ++AHN KFD + L + L P +DT+ Sbjct: 84 QQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTP--RVDTV 139 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +++ P+ + L +L + + + H A+ D+ + + IK+ Sbjct: 140 ELSQLFFPTFEKYSLGNLAEHLELGLD--QAHTAISDAMATARLLIKI 185 >gi|304312854|ref|YP_003812452.1| Ribonuclease T [gamma proteobacterium HdN1] gi|301798587|emb|CBL46817.1| Ribonuclease T [gamma proteobacterium HdN1] Length = 223 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSP 57 R +V D+ET G +S+ D ++EI A+ + + K RT + P G Sbjct: 12 RFRGFLPVVIDVETGGFNSQTDALLEIAAISLHFDENGWLKKYRTSHFHVSPFAGANIEK 71 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFN---EQNAEWIAHNAKFDVGFINAE 109 +L+ GI + +K + + IF E + + A + HNA FD F+ A Sbjct: 72 ASLEFTGIDPWHPFRNAVDEKVALTEIFGEVRKALSNLECKRAILVGHNAFFDHQFLFAA 131 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 QR I ++P P DT ++ + L C GI+ + + H AL D+ Sbjct: 132 TQRAAIKRNPFHPFSCFDTATLGGVAL--GQTVLARACIAAGISFNQKEAHSALYDADKT 189 Query: 168 SDVYIKMMVGGSQIN 182 +D++ ++ + Sbjct: 190 ADLFCHIVNRWRALG 204 >gi|212640084|ref|YP_002316604.1| Exonuclease [Anoxybacillus flavithermus WK1] gi|212561564|gb|ACJ34619.1| Exonuclease [Anoxybacillus flavithermus WK1] Length = 222 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 8/179 (4%) Query: 9 KIVFDIETTGLDSKN-DRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGIT 66 VFD ETTG DR+IEIGAV++ + + TF ++ PN R P ++L IT Sbjct: 29 FTVFDTETTGFHVATVDRLIEIGAVQVKGTAVIEDETFHTYVNPN-RDLPPVIVELTNIT 87 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +E +K P+ +F+ F ++ + ++ H FD+ + EL+R P ID Sbjct: 88 EEKVKHAPTAIEALQQFFQFVEQKQSVCFVGHYISFDLFVLKHELRREKMKFRKP-TFID 146 Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 TL + PS DL + +G + R H A+ D+ + ++++++ + Sbjct: 147 TLDLIGFIAPSYDMRDLERYAQAFGTRMYER--HSAIGDALTTAYLFVELLQQFRLRGY 203 >gi|55822780|ref|YP_141221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus thermophilus CNRZ1066] gi|55738765|gb|AAV62406.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066] Length = 828 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K+ + + D+E T S II++G V + + + F + P+ +K + Sbjct: 1 MSEKSTNKYAIVDLEATSASS-TACIIQVGIVIMQNGRVIDE-FASDVNPH-QKLDNHIV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ ++ ++AHN KFD + L + P Sbjct: 58 HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLLAEALFMEGFELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P+ + +L+ L + + ++ H A+ D+ + + +M + Sbjct: 116 --RVDTVELAQVFYPTLEQYNLSYLSRVLNLDLA--QAHTAIEDARATGKLLLHLMDKIA 171 Query: 180 QI 181 + Sbjct: 172 SL 173 >gi|325271798|ref|ZP_08138267.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] gi|324103069|gb|EGC00447.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51] Length = 201 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 15/186 (8%) Query: 8 RKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ R E+ V +L+ + +Q + G L GIT Sbjct: 3 RIAVIDFETTGISPGAGCRATEVAVV-MLEGGRIVERYQSLMN-AGVPVPAFVAGLTGIT 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L+ P + +E +F E +AHNA FD F + EL RI + + Sbjct: 61 TAMLRSAPPVDKVMNEVAEFVGE--TPLLAHNAAFDQKFWDYELARIGRS--RSQSFACS 116 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV------GGS 179 L ++RR P + + L +L + G+ + H A+ D+ + +++ + G Sbjct: 117 LLLSRRLLPAAPNHKLGTLTRWAGLP-DTGNAHRAMADAEMAANLMQHLAGVLREQHGVQ 175 Query: 180 QINFGF 185 Q++ G Sbjct: 176 QLSHGL 181 >gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens CPE str. F4969] Length = 876 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 8/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K IVFD+E+TG+D D II+I A++L + F+ FL +K+ ++ + Sbjct: 504 EFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKN--KKSVKDSYYV 561 Query: 63 HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +DE L+ + EF ++ +++ + HN ++D+ + +EL+R N Sbjct: 562 HGFSDEMLQRIGEDKEKVLKEFVEY--SKDSIIVGHNVQYDINILCSELERSNLGKPKFK 619 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL I RR +P + L +L K Y H+ H A+ D ++ ++ + Sbjct: 620 TFYDTLDIYRRFYPGNINYKLENLSKVY--DTKHKPSHDAMDDIIATGELLVRAI 672 >gi|253773201|ref|YP_003036032.1| exodeoxyribonuclease X [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161904|ref|YP_003045012.1| exodeoxyribonuclease X [Escherichia coli B str. REL606] gi|297519020|ref|ZP_06937406.1| exodeoxyribonuclease X [Escherichia coli OP50] gi|242377565|emb|CAQ32320.1| exonuclease X [Escherichia coli BL21(DE3)] gi|253324245|gb|ACT28847.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973805|gb|ACT39476.1| exodeoxyribonuclease X [Escherichia coli B str. REL606] gi|253977999|gb|ACT43669.1| exodeoxyribonuclease X [Escherichia coli BL21(DE3)] Length = 220 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAIAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|242041211|ref|XP_002468000.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor] gi|241921854|gb|EER94998.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor] Length = 583 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 82/180 (45%), Gaps = 19/180 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + DRIIE +L+ N TFQ + P + +HGI++ Sbjct: 383 ILVFDIETTGFSRREDRIIEFAVRDLMGGK--NSTFQTLINPEKEVRNA---YVHGISNS 437 Query: 69 FL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP 120 L D P F + + + + W+AHN + FDV F+ E +R + Sbjct: 438 MLCRPDVPRFGELVPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLIFEFRRCKLEMPGD 497 Query: 121 SRIIDTLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DTL IAR+ S S L +L +RY I ++ S H A+ D L V K+ Sbjct: 498 WLFVDTLPIARQLVDSDGSKLSSVSLKNLRERYNIPLTG-SAHRAMQDVTTLCYVLQKLT 556 >gi|319757677|gb|ADV69619.1| Rad3-related DNA helicase [Streptococcus suis JS14] Length = 837 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 10/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E TG + +II+IG V + + + ++ + P L GITD Sbjct: 27 RYAVVDLEATGT-GTDAKIIQIGIVLVENGEIID-SYATDINP-YELLDDHIKNLTGITD 83 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P F + S +D +A ++AHN KFD + L + L P +DT+ Sbjct: 84 QQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTP--RVDTV 139 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +++ P+ + L +L + + + H A+ D+ + + IK+ Sbjct: 140 ELSQLFFPTFEKYSLGNLAEHLELGLD--QAHTAISDAMATARLLIKI 185 >gi|312172307|emb|CBX80564.1| ribonuclease T [Erwinia amylovora ATCC BAA-2158] Length = 224 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G D+K + ++EI AV + + + + T + P G Sbjct: 15 RFRGFYPVVIDVETAGFDAKTNALLEIAAVTLKMDSEGWLEKDETLHFNVEPFPGSVMLA 74 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF + +AHNA FD+ F+NA Sbjct: 75 EALAFNGIDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAA 134 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L C G++ H AL D+ Sbjct: 135 AERASLKRNPFHPFVTFDTAALSGLVL--GQTVLAKACNAAGMSFDSAQAHSALYDTLQT 192 Query: 168 SDVYIKMMVGGSQIN 182 +D++ +++ ++ Sbjct: 193 ADLFCELVNRWKRLG 207 >gi|146318210|ref|YP_001197922.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33] gi|146320404|ref|YP_001200115.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33] gi|145689016|gb|ABP89522.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33] gi|145691210|gb|ABP91715.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33] gi|292558009|gb|ADE31010.1| DnaQ exonuclease [Streptococcus suis GZ1] Length = 837 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 10/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R V D+E TG + +II+IG V + + + ++ + P L GITD Sbjct: 27 RYAVVDLEATGT-GTDAKIIQIGIVLVENGEIID-SYATDINP-YELLDDHIKNLTGITD 83 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L P F + S +D +A ++AHN KFD + L + L P +DT+ Sbjct: 84 QQLSQAPDFGQVASTIYDMIG--DAIFVAHNVKFDANLLAEALFFEGYELLTP--RVDTV 139 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +++ P+ + L +L + + + H A+ D+ + + IK+ Sbjct: 140 ELSQLFFPTFEKYSLGNLAEHLELGLD--QAHTAISDAMATARLLIKI 185 >gi|313884171|ref|ZP_07817937.1| exonuclease, DNA polymerase III, epsilon subunit family [Eremococcus coleocola ACS-139-V-Col8] gi|312620618|gb|EFR32041.1| exonuclease, DNA polymerase III, epsilon subunit family [Eremococcus coleocola ACS-139-V-Col8] Length = 849 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 83/176 (47%), Gaps = 12/176 (6%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + DIETTG + + DRII+I A+ +++ + + + + + PN KL GI++ Sbjct: 5 IAIVDIETTGPNLDQGDRIIQIAAL-IIEEGQVTKEYDMLINPN-MPIPSHISKLTGISN 62 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ P S + + ++ ++AHN FD+ F+ D P+ +DT+ Sbjct: 63 EQVQKAPHLSQVID--LWHYRLKDCIFVAHNINFDLRFLKQCFHHFGLDFNPPA--LDTV 118 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDV--YIKMMVGGSQ 180 +A+ P + +L L + + H AL D+ + + + +I ++ ++ Sbjct: 119 KLAKIFMPQAIGFNLTDLSQEMNLFFD--QAHQALADAKITAYLLDWIAQLIIQAE 172 >gi|193212627|ref|YP_001998580.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327] gi|193086104|gb|ACF11380.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB 8327] Length = 232 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +++D ETTG D ++DRII IGAV +F+V L + +A+ +HG+ Sbjct: 44 RFVIYDTETTGFDFRHDRIISIGAVGTKGEVIDIADSFEVLLRQE-VCSERDAVTVHGLL 102 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + S F D+ NA +AH+A FD+ IN L R L + +DT Sbjct: 103 KRDIDSGLEESEAVCRFLDYLG--NAVIVAHHADFDIAMINQVLSRRFGMRLF-NEALDT 159 Query: 127 LSIARRK---------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S A+R H L++LC RYGI + R H A D++L + ++ +++ Sbjct: 160 ASFAKRLEKGPYYNLAHKGGEYRLDNLCARYGIRLYDR--HTAPGDAYLTAQLFQRLLAL 217 Query: 178 GSQINF 183 G + Sbjct: 218 GRKAGI 223 >gi|292488168|ref|YP_003531050.1| ribonuclease T [Erwinia amylovora CFBP1430] gi|291553597|emb|CBA20642.1| ribonuclease T [Erwinia amylovora CFBP1430] Length = 226 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G D+K + ++EI AV L + + + T + P G Sbjct: 15 RFRGFYPVVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLA 74 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF + +AHNA FD+ F+NA Sbjct: 75 EALAFNGIDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAA 134 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L C G++ H AL D+ Sbjct: 135 AERASLKRNPFHPFVTFDTAALSGLVL--GQTVLAKACNAAGMSFDSAQAHSALYDTLQT 192 Query: 168 SDVYIKMMVGGSQIN 182 +D++ +++ ++ Sbjct: 193 ADLFCELVNRWKRLG 207 >gi|268319456|ref|YP_003293112.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785] gi|262397831|emb|CAX66845.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785] Length = 938 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 9/161 (5%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G ++ K +T+ + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKTYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + FS + +N ++AHN FD+ F+N EL +PL + +DT+ Sbjct: 68 EDVAKAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTV 124 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +A+ P+ L L R I H + H A D+ + Sbjct: 125 ELAQIVFPTFPSYKLRDLTARLRIK--HLNPHRADSDALVT 163 >gi|189346782|ref|YP_001943311.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] gi|189340929|gb|ACD90332.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245] Length = 205 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 94/187 (50%), Gaps = 16/187 (8%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 +++R +VFD ETTG D K D+II IGA+ + +F+V + + +A+ + Sbjct: 13 LSEVRFVVFDTETTGFDLKTDKIISIGAIALTAQRIEVGDSFEVLVRQE-KVGDRDAVSV 71 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HG+ + + S + F D+ N+ +A +A FD+ +N L + L + Sbjct: 72 HGLLRKDIASGIDEKSAVTAFLDYIG--NSVLVAQHAGFDITMVNRVLWKHFGIRLF-ND 128 Query: 123 IIDTLSIARRK---------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++DT S+A+R H + L++LC+RY I + R H + D++L + ++ + Sbjct: 129 VVDTASLAKRLEKGPYYNLAHKAGEYRLDNLCERYNIRLHDR--HTSAGDAYLTAQLFQR 186 Query: 174 MMVGGSQ 180 ++ G + Sbjct: 187 LLAKGKK 193 >gi|307565507|ref|ZP_07627990.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii CRIS 21A-A] gi|307345787|gb|EFN91141.1| DNA polymerase III subunit epsilon domain protein [Prevotella amnii CRIS 21A-A] Length = 183 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 7/175 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N + I D ET +K I E G + ++ K T + P + S +++H Sbjct: 1 MNNINFIAIDFETA--TAKRSSICEAG-ICVVKGGKVVETKSWLVRPEDNRYSYWNIQIH 57 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + P+F ++ E + + +AHNA FD+ I LQ ++ P Sbjct: 58 GIRPQDTAYAPTFPKVWEEITTYLRDCP-VLVAHNAAFDMSCIRHTLQ-LHHLPCPDIDY 115 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +L AR + N L+ LC + I S+ + H A D+ + + ++++ + G Sbjct: 116 YCSLRAARHIYDFGCNTLDYLCDHFSI--SYGTHHRAGDDAEMCARLFLQEIKDG 168 >gi|148546369|ref|YP_001266471.1| ribonuclease T [Pseudomonas putida F1] gi|166200017|sp|A5VZH7|RNT_PSEP1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|148510427|gb|ABQ77287.1| RNAse T [Pseudomonas putida F1] gi|313497451|gb|ADR58817.1| Ribonuclease T [Pseudomonas putida BIRD-1] Length = 224 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + K T+ + P G P AL+ Sbjct: 31 PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGANIEPAALEFT 90 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 GI D L+ S S ++ + A + HN+ FD+GF+NA + R + Sbjct: 91 GIKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDL 150 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ I R H A D+ ++++ Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCG 208 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 209 IVNRWKEMG 217 >gi|154492230|ref|ZP_02031856.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC 43184] gi|154087455|gb|EDN86500.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC 43184] Length = 256 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 15/210 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K + FD+ETTG++ DRI+EI V++ K + + P PE+ Sbjct: 1 MQLNLKNPLVFFDLETTGINIVKDRIVEISFVKVYPNGK-EESKTRRINPE-MPIPPEST 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118 +HGITDE +KD P+F I + + +N +FD+ + E R D L Sbjct: 59 AIHGITDEDVKDCPTFKEIAKSLAAQI--EGCDLAGYNSNRFDIPLLAEEFLRAGVDIDL 116 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + + +D +I H + L + K Y S + H A D+ +V + Sbjct: 117 NKRKFVDVQTI---FHKMEQRTLAAAYKFY-CDKSLENAHTAEADTMATYEVLKAQLDRY 172 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKR 208 ++ N+ F + N+ R Sbjct: 173 PELQ-----NDINFLSQYSSYTNNVDFAGR 197 >gi|292899378|ref|YP_003538747.1| ribonuclease T [Erwinia amylovora ATCC 49946] gi|291199226|emb|CBJ46341.1| ribonuclease T [Erwinia amylovora ATCC 49946] Length = 224 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G D+K + ++EI AV L + + + T + P G Sbjct: 13 RFRGFYPVVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDETLHFNVEPFPGSVLLA 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF + +AHNA FD+ F+NA Sbjct: 73 EALAFNGIDPANPLRAAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L C G++ H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLVL--GQTVLAKACNAAGMSFDSAQAHSALYDTLQT 190 Query: 168 SDVYIKMMVGGSQIN 182 +D++ +++ ++ Sbjct: 191 ADLFCELVNRWKRLG 205 >gi|13507773|ref|NP_109722.1| DNA polymerase III PolC [Mycoplasma pneumoniae M129] gi|2494192|sp|P75080|DPO3_MYCPN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|1673778|gb|AAB95768.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129] Length = 1443 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 94/213 (44%), Gaps = 13/213 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FDIETTGL + D +IE +++ + R Q FL +G + Sbjct: 401 TKLKDATFVIFDIETTGLHGRYDSVIEFAGIKVKHNREVER-MQFFLKIDG-PLPAAVTE 458 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120 + IT L+D + + + + +AHN FD+ F+ + ++ N PL Sbjct: 459 ITKITQAQLEDGMEQQAGLEKLRAWLD--GCVMVAHNGLSFDLPFLQTQFEKYNIAPL-T 515 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY------IK 173 + +IDTL+++ +P + + L+++C + H A D+ L V+ ++ Sbjct: 516 NPLIDTLALSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDTQALKKVFDYFKEQVE 575 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206 +M + + N+ F+ K+T N ++ Sbjct: 576 LMGITNLEQLDQELNQQCHFELLKRTFTNTGII 608 >gi|289676753|ref|ZP_06497643.1| ribonuclease T [Pseudomonas syringae pv. syringae FF5] Length = 225 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + K T+ + P G AL+ Sbjct: 32 PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFT 91 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 GI D L+ S + ++ + A + HNA FD+GF+NA + R+ Sbjct: 92 GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 210 IVNRWKEMG 218 >gi|329667338|gb|AEB93286.1| ATP dependent helicase [Lactobacillus johnsonii DPC 6026] Length = 938 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 9/161 (5%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G ++ K +T+ + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKTYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + FS + +N ++AHN FD+ F+N EL +PL + +DT+ Sbjct: 68 EDVAQAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTV 124 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +A+ P+ L L R I H + H A D+ + Sbjct: 125 ELAQIAFPTFPSYKLRDLTARLRIK--HLNPHRADSDALVT 163 >gi|312863243|ref|ZP_07723481.1| putative ATP-dependent DNA helicase DinG [Streptococcus vestibularis F0396] gi|311100779|gb|EFQ58984.1| putative ATP-dependent DNA helicase DinG [Streptococcus vestibularis F0396] Length = 839 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M KN + + D+E T S II++G V + + + F + P+ ++ + Sbjct: 12 MSEKNTNKYAIVDLEATSASS-TACIIQVGIVIMQNGLVIDE-FASDVNPH-QELDDHIV 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ ++ ++AHN KFD + L + P Sbjct: 69 HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLLAEALFMEGFELRTP 126 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P+ + L+ L + + ++ H A+ D+ + +M + Sbjct: 127 --RVDTVELAQVFYPTLEQYKLSYLSQVLNLDLA--QAHTAIEDARATGQLLFHLMDKIA 182 Query: 180 QI 181 + Sbjct: 183 SL 184 >gi|333003546|gb|EGK23086.1| exonuclease family protein [Shigella flexneri VA-6] gi|333004693|gb|EGK24216.1| exonuclease family protein [Shigella flexneri K-272] gi|333018414|gb|EGK37712.1| exonuclease family protein [Shigella flexneri K-227] Length = 220 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVN-PMSLLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|212723090|ref|NP_001131224.1| hypothetical protein LOC100192533 [Zea mays] gi|194690922|gb|ACF79545.1| unknown [Zea mays] Length = 315 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 19/180 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG ++DRIIE +L+ N TFQ + P + +HGI + Sbjct: 115 ILVFDIETTGFSRRDDRIIEFAVRDLMGGK--NNTFQTLINPEK---DVKNTYVHGINNS 169 Query: 69 FL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP 120 L D P F I + + + W+AHN + FDV F+ E +R + Sbjct: 170 MLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGD 229 Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DTL IA++ S+ + L+S L +RY I ++ S H A+ D LS V K+ Sbjct: 230 WLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTG-SAHRAMQDVTTLSYVLQKLT 288 >gi|254558840|ref|YP_003065935.1| hypothetical protein METDI0201 [Methylobacterium extorquens DM4] gi|254266118|emb|CAX21870.1| hypothetical protein, putative exonuclease domain [Methylobacterium extorquens DM4] Length = 297 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 10/212 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET + + D +G + ++ + R + P + SP +++HGI Sbjct: 1 MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P+F + +EF + +AHNA FD+G + A L +P+ T Sbjct: 58 PADVRDAPTFPEVIAEFLP--DLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L IARR P + L + R GI H H A D+ +++ + + + Sbjct: 115 LQIARRVFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAALRETGAADIAD 171 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 T P + + R + Sbjct: 172 LARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203 >gi|227890026|ref|ZP_04007831.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC 33200] gi|227849470|gb|EEJ59556.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC 33200] Length = 938 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 9/161 (5%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G ++ K +T+ + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKTYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + FS + +N ++AHN FD+ F+N EL +PL + +DT+ Sbjct: 68 EDVAKAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTV 124 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +A+ P+ L L R I H + H A D+ + Sbjct: 125 ELAQIVFPTFPSYKLRDLTARLRIK--HLNPHRADSDALVT 163 >gi|301633239|gb|ADK86793.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma pneumoniae FH] Length = 1443 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 94/213 (44%), Gaps = 13/213 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++FDIETTGL + D +IE +++ + R Q FL +G + Sbjct: 401 TKLKDATFVIFDIETTGLHGRYDSVIEFAGIKVKHNREVER-MQFFLKIDG-PLPAAVTE 458 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDP 120 + IT L+D + + + + +AHN FD+ F+ + ++ N PL Sbjct: 459 ITKITQAQLEDGMEQQAGLEKLRAWLD--GCVMVAHNGLSFDLPFLQTQFEKYNIAPL-T 515 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY------IK 173 + +IDTL+++ +P + + L+++C + H A D+ L V+ ++ Sbjct: 516 NPLIDTLALSWALNPGFASHTLSNICAKLKFDFDDERLHRADYDTQALKKVFDYFKEQVE 575 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKKTVPNISLL 206 +M + + N+ F+ K+T N ++ Sbjct: 576 LMGITNLEQLDQELNQQCHFELLKRTFTNTGII 608 >gi|290969003|ref|ZP_06560538.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Megasphaera genomosp. type_1 str. 28L] gi|290780959|gb|EFD93552.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Megasphaera genomosp. type_1 str. 28L] Length = 869 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 15/216 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD+E+TG + D II+I AV L F +L P+ + ++ +HG++DEF Sbjct: 501 IVFDVESTGTNPLQDEIIQIAAVRLRTDGTIQEKFMTYLRPS--RTVGDSYAIHGLSDEF 558 Query: 70 L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L K+ F F +++ + HN +D+ + +EL R++ +DTL Sbjct: 559 LQKNGTDARRALQNFLTF--AKDSLIVGHNVLYDISILQSELSRLSLPCPTEMPYMDTLD 616 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI-----KMMVGGSQIN 182 I RR +P + L L + + +H+ H A D +D+ K++ + Sbjct: 617 IYRRFYPDLEKYTLEFLSHHF--STAHKPSHNAWDDILATADLLQTVLQEKILSQTATRR 674 Query: 183 FGFKTNEDRF--FKEEKKTVPNISLLKRDKPLFTRI 216 F T RF F E+ + S R L TRI Sbjct: 675 ELFTTYAHRFISFSEKISALRRQSYSLRPHELLTRI 710 >gi|221195007|ref|ZP_03568063.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium rimae ATCC 49626] gi|221184910|gb|EEE17301.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium rimae ATCC 49626] Length = 251 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 21/176 (11%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + + D ETTGLD + D II++ ++ S F+ +CP RK P A +++GIT Sbjct: 22 KILCIDTETTGLDPRKDEIIQLSMIDGHGKSI----FESLICPPTRKRWPNAQEINGITP 77 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +K KP + + + N + + +N FD+ + AE D + Sbjct: 78 KMVKGKPELEEVADQVQEAINAADL-IVGYNLPFDISMMEAE-----GFDFSDKEQYDLM 131 Query: 128 SIARRKHPSSRN--------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + + L + K YGI + H A D+ ++ M+ Sbjct: 132 EDYAQVFGRWSSAKDDYLWTKLTTAAKHYGIKF---AAHDAGEDARATIKLFYAML 184 >gi|168494862|ref|ZP_02719005.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|168494874|ref|ZP_02719017.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|168495024|ref|ZP_02719167.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575147|gb|EDT95675.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575215|gb|EDT95743.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] gi|183575301|gb|EDT95829.1| DNA polymerase III PolC-type (PolIII) [Streptococcus pneumoniae CDC3059-06] Length = 307 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 82/222 (36%), Gaps = 20/222 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ET + + IG V+ D + + F + P + +HGIT E Sbjct: 5 YVALDVETA--NDFRGSVCSIGLVKFKDGNIVD-AFYTLINPEEEFDDFNIF-IHGITPE 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + D P+F + DF +AH A+FD+G + Q+ D D I + Sbjct: 61 DVLDSPTFPEVRKAIVDFIGSD--IVVAHFAQFDMGALKDVYQKYELD-FDNIEYICSYR 117 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +A+ P L L K I + H H AL D+ + ++ S +F Sbjct: 118 LAKVALPGQLNYKLKRLAKNLNIELDH---HNALSDARASGLILEYLL---STNSFSDLN 171 Query: 188 NEDRFFKEEKKTVPNISLLKRDKP------LFTRITKEELDE 223 + + K + KR K L + T+EE Sbjct: 172 AFLKEYSYNKTGLLGQYGFKRKKSYQYKENLIYQPTEEEKAA 213 >gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 1467 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 6/169 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIETTGL + IIE G++ + K R Q F+ P L GIT+ Sbjct: 432 YVSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQ-EPIKPFTENLTGITNA 490 Query: 69 FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + K + ++ N + A +AHNA+FD F+ + ++ + +IDTL Sbjct: 491 MIEKSGLELKEALQKIYNDLNGKIA--LAHNARFDFNFLKEKFRQAKIE-FPNVTVIDTL 547 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R P ++ L + R G+ H D+ +L++V++ +M Sbjct: 548 IVSRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALM 596 >gi|77413703|ref|ZP_00789886.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus agalactiae 515] gi|77160248|gb|EAO71376.1| putative DnaQ family exonuclease/DinG family helicase [Streptococcus agalactiae 515] Length = 835 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + +L + P Sbjct: 72 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTP 129 Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IDT+ +++ +P + L +L + I ++ H A+ D+ + ++IK+ S Sbjct: 130 --RIDTVELSQVFYPCLEKYSLGALAESLNIELTD--AHTAIADARATAQLFIKLKAKIS 185 Query: 180 QI 181 + Sbjct: 186 SL 187 >gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64] gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64] Length = 1461 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 6/169 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + FDIETTGL + IIE G++ + K R Q F+ P L GIT+ Sbjct: 426 YVSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQ-EPIKPFTENLTGITNA 484 Query: 69 FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + K + ++ N + A +AHNA+FD F+ + ++ + +IDTL Sbjct: 485 MIEKSGLELKEALQKIYNDLNGKIA--LAHNARFDFNFLKEKFRQAKIE-FPNVTVIDTL 541 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++R P ++ L + R G+ H D+ +L++V++ +M Sbjct: 542 IVSRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALM 590 >gi|303246654|ref|ZP_07332932.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans JJ] gi|302491994|gb|EFL51872.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans JJ] Length = 240 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 20/185 (10%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKL 62 + + +V D E TG D + ++ IGAV L +F + P+ R +A + Sbjct: 38 LDDLPFVVVDTELTGFDPRRHAMVAIGAVRLRGLTLLPGESFFSLVRPS-RDVPRDASLI 96 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HG+TD L D P + + F DF A + H+ + D+ FINA +R L + Sbjct: 97 HGLTDAALADAPETAETLAAFLDFLGP--AIIVGHHVELDMAFINAASRRYFGGELA-AP 153 Query: 123 IIDTLSIA------RRKHPSSR-------NDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 IDTL +A R+ + DL SLC+RYG+ + H AL D++ + Sbjct: 154 CIDTLRLALTYEEKRQMGQGGQGDFERLEFDLASLCRRYGLPP--FAAHDALGDAYGAAY 211 Query: 170 VYIKM 174 +++ + Sbjct: 212 LFLYL 216 >gi|21684658|gb|AAL87523.1| DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps] Length = 212 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 5/156 (3%) Query: 19 LDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78 L + R+ E+G VE+ T F ++ P R + A +HG+ DEFL +P+FS+ Sbjct: 1 LSPRYHRLAEVGCVEIACGRITGNYFHAYINPRQR-MTRGAQAVHGLRDEFLATQPAFSA 59 Query: 79 IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTLSIARRKHPS 136 I F + + + HN FD+ F++A L P IDT+ ++ Sbjct: 60 IAQRLLFFLCQ--STLVGHNLSFDLNFLDAGLATAGFMPAARYCHGVIDTMCHLAQRGSR 117 Query: 137 SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 R L++ C G+ R++HGAL+D+ LL++ ++ Sbjct: 118 RRFSLDACCDMLGVRRGDRARHGALVDAVLLAEAFV 153 >gi|42519127|ref|NP_965057.1| hypothetical protein LJ1202 [Lactobacillus johnsonii NCC 533] gi|41583414|gb|AAS09023.1| hypothetical protein LJ_1202 [Lactobacillus johnsonii NCC 533] Length = 938 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 9/161 (5%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G ++ K +T+ + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKTYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + FS + +N ++AHN FD+ F+N EL +PL + +DT+ Sbjct: 68 EDVAQAHDFSYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAVDTV 124 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +A+ P+ L L R I H + H A D+ + Sbjct: 125 ELAQIAFPTFPSYKLRDLTARLRIK--HLNPHRADSDALVT 163 >gi|22536702|ref|NP_687553.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus agalactiae 2603V/R] gi|25010639|ref|NP_735034.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus agalactiae NEM316] gi|22533544|gb|AAM99425.1|AE014216_1 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus agalactiae 2603V/R] gi|23094993|emb|CAD46214.1| Unknown [Streptococcus agalactiae NEM316] Length = 835 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + +L + P Sbjct: 72 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTP 129 Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IDT+ +++ +P + L +L + I ++ H A+ D+ + ++IK+ S Sbjct: 130 --RIDTVELSQVFYPCLEKYSLGALAESLNIELTD--AHTAIADARATAQLFIKLKAKIS 185 Query: 180 QI 181 + Sbjct: 186 SL 187 >gi|77405453|ref|ZP_00782546.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae H36B] gi|77175946|gb|EAO78722.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae H36B] Length = 835 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIXGN--KIIDSYETDVNPH-ESLDEHIV 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + +L + P Sbjct: 72 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTP 129 Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IDT+ +++ +P + L +L + I ++ H A+ D+ + ++IK+ S Sbjct: 130 --RIDTVELSQVFYPCLEKYSLGALAESLNIELTD--AHTAIADARATAQLFIKLKAKIS 185 Query: 180 QI 181 + Sbjct: 186 SL 187 >gi|224476950|ref|YP_002634556.1| hypothetical protein Sca_1466 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421557|emb|CAL28371.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 185 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 11/182 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M KN + D ET + K I +G V+++D TF + PN S + + Sbjct: 1 MNDKNA--FVALDFETA--NGKRTSICSVGMVKVVDNEIV-ETFYTLVNPNDY-FSQQNI 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGI E + P F+ + F +N +AHNA FD+ ++A +Q + D Sbjct: 55 NVHGIQPEDVATAPVFNFVLPYMLQFI--ENLPVVAHNAAFDMTVLHASIQALGLDT-PE 111 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 +L +ARR ++R LN + + Y + H AL D+ + + +++ Sbjct: 112 MTYFCSLQLARRTVNANRYGLNHMMEYYHLDF--HGHHDALNDAKACAMITFRLLKNYDS 169 Query: 181 IN 182 +N Sbjct: 170 LN 171 >gi|76786927|ref|YP_329306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus agalactiae A909] gi|77411574|ref|ZP_00787916.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae CJB111] gi|76561984|gb|ABA44568.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae A909] gi|77162359|gb|EAO73328.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae CJB111] Length = 835 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + +L + P Sbjct: 72 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTP 129 Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IDT+ +++ +P + L +L + I ++ H A+ D+ + ++IK+ S Sbjct: 130 --RIDTVELSQVFYPCLEKYSLGALAESLNIELTD--AHTAIADARATAQLFIKLKAKIS 185 Query: 180 QI 181 + Sbjct: 186 SL 187 >gi|237731882|ref|ZP_04562363.1| exodeoxyribonuclease X [Citrobacter sp. 30_2] gi|226907421|gb|EEH93339.1| exodeoxyribonuclease X [Citrobacter sp. 30_2] Length = 226 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 24/178 (13%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +++ M +I D ET GL I+EI +V+++D N + P+ R SP+A+ Sbjct: 1 MGQEHGMLRI-IDTETCGLQGG---IVEIASVDVVDGKIVNPMSH-LVRPD-RPISPQAM 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +H IT+ + DKP + + ++ + ++AHNA FD + P P Sbjct: 55 AIHRITEAMVADKPWIEDVIPQ---YYGSE--WYVAHNASFDRRVL----------PDMP 99 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 I T+ ++RR P + +L K +++ + H AL D ++ + + I +M Sbjct: 100 GEWICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPAGLHHHRALYDCYITAALLIDIM 157 >gi|145219710|ref|YP_001130419.1| DNA polymerase III, epsilon subunit [Prosthecochloris vibrioformis DSM 265] gi|145205874|gb|ABP36917.1| DNA polymerase III, epsilon subunit [Chlorobium phaeovibrioides DSM 265] Length = 221 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 16/182 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGIT 66 R +VFD ETTG D +NDR+I IGAV L + T +F+V + G E++ +HG+ Sbjct: 33 RFVVFDTETTGFDLQNDRVISIGAVALEGSAITIADSFEVLVRQPGV-GQKESVSVHGLL 91 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + S + F D+ N+ +A +A FDV +N L + + L ++DT Sbjct: 92 KKDIASGVSERDGVTSFLDYIG--NSILVAQHASFDVAMLNRLLWELFRIRLFNG-VVDT 148 Query: 127 LSIARRK---------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S+A+R H + L+ LC+RYGI + R H + D++L + + +++ Sbjct: 149 ASLAKRLEKGPYHNLAHKAGEYRLDHLCQRYGIRLHDR--HTSAGDAYLTAQLLQRLLAK 206 Query: 178 GS 179 G Sbjct: 207 GR 208 >gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1] gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1] Length = 849 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 96/175 (54%), Gaps = 9/175 (5%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + K R ++FD+E+TGLD D +I+I A+EL++ T R+F+ F+ P+ + ++ + Sbjct: 489 QFEKGRIVIFDVESTGLDVTQDEVIQIAAIELVNGEYT-RSFERFIKPSH--SVGDSALV 545 Query: 63 HGITDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +D++L + + +F +F F + A I HN ++D+ +++++ R+ + Sbjct: 546 HGFSDDYLNEHGEEAREVFLQFQAFV--EGALLIGHNVQYDLKIVSSQMNRLGLMFENSM 603 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL I RR +P + + L+++ G+ SH H A+ D DV +K M Sbjct: 604 GYYDTLDIVRRLYPDLKNHKLDTVSAYVGV--SHEPTHNAMDDILATKDVLVKSM 656 >gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909] gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909] Length = 849 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 96/175 (54%), Gaps = 9/175 (5%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + K R ++FD+E+TGLD D +I+I A+EL++ T R+F+ F+ P+ + ++ + Sbjct: 489 QFEKGRIVIFDVESTGLDVTQDEVIQIAAIELVNGEYT-RSFERFIKPSH--SVGDSALV 545 Query: 63 HGITDEFLKDKPSFS-SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +D++L + + +F +F F + A I HN ++D+ +++++ R+ + Sbjct: 546 HGFSDDYLNEHGEEAREVFLQFQAFV--EGALLIGHNVQYDLKIVSSQMNRLGLMFENSM 603 Query: 122 RIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL I RR +P + + L+++ G+ SH H A+ D DV +K M Sbjct: 604 GYYDTLDIVRRLYPDLKNHKLDTVSAYVGV--SHEPTHNAMDDILATKDVLVKSM 656 >gi|306845957|ref|ZP_07478524.1| DNA polymerase III, epsilon chain [Brucella sp. BO1] gi|306273592|gb|EFM55437.1| DNA polymerase III, epsilon chain [Brucella sp. BO1] Length = 235 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 5/172 (2%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I K R IVFD ETTG+ DRII +GAV++ ++ + + +SP+A Sbjct: 9 IHTRKKRVIVFDTETTGILP-YDRIITLGAVKIEGDELLTQSLY-LIFDPRKDSSPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + F + + +F+ + E +AHNA+FD+ +I E ++ D LD Sbjct: 67 IHGFDNWMTRYQDLFHELAAPIRKWFSWAD-EVVAHNAQFDIHYIQREFRKAEVDMLD-Q 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + T+ ARR L+ + G+ + +HGAL D++L + +Y+ Sbjct: 125 PVYCTMEGARRLWRGDSAKLDHCLAKIGLARTGY-RHGALEDAYLTAGLYLH 175 >gi|149020300|ref|ZP_01835192.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae SP23-BS72] gi|147930602|gb|EDK81584.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae SP23-BS72] Length = 308 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 11/176 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ET +S + IG V+ +D + + +F + P K S +K+H I E Sbjct: 5 FIALDVETA--NSFRGSLCSIGLVKFIDGQEVD-SFYTLINPE-EKFSSRNIKIHAIKPE 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+F + E +F + N +AHNA+FD + + P D + + Sbjct: 61 DVIGAPTFPEVQKEIINFID--NLPIVAHNARFDAYALQDVYLKYEI-PFDNIQYFCSYQ 117 Query: 129 IARRKH-PSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 + + + L++L + + I++ H H AL D+ + ++++ Q + Sbjct: 118 VCKIILTDLPNHKLHTLAEHFKISLDH---HNALSDARACGLILLEILKLSKQTSI 170 >gi|70732181|ref|YP_261937.1| ribonuclease T [Pseudomonas fluorescens Pf-5] gi|123653314|sp|Q4K746|RNT_PSEF5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|68346480|gb|AAY94086.1| ribonuclease T [Pseudomonas fluorescens Pf-5] Length = 223 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI A ++ + T+ + P G AL+ Sbjct: 30 PVVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFT 89 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 GI D L+ S + ++ + A + HN+ FD+GF+NA + R + Sbjct: 90 GIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDM 149 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ I R H A D+ ++++ Sbjct: 150 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQSADIDFDGREAHSARYDTEKTAELFCG 207 Query: 174 MMVGGSQIN 182 ++ Q+ Sbjct: 208 IVNRWKQMG 216 >gi|237798772|ref|ZP_04587233.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021625|gb|EGI01682.1| ribonuclease T [Pseudomonas syringae pv. oryzae str. 1_6] Length = 225 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + K T+ + P G AL+ Sbjct: 32 PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFT 91 Query: 64 GITDEF-----LKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQRI-- 113 GI + + ++ + + IF + A + HNA FD+GF+NA + R+ Sbjct: 92 GIKLDHPLRMAVSEETAINDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 210 IVNRWKEMG 218 >gi|259908542|ref|YP_002648898.1| ribonuclease T [Erwinia pyrifoliae Ep1/96] gi|224964164|emb|CAX55671.1| Ribonuclease T [Erwinia pyrifoliae Ep1/96] gi|283478503|emb|CAY74419.1| ribonuclease T [Erwinia pyrifoliae DSM 12163] Length = 219 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPN-GRKNSP 57 R +V D+ET G D+K + ++EI AV L + + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLEKDDTLHFHVEPFAGSVLLP 72 Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109 EAL +GI L+ S + A +AHNA FD+ F+NA Sbjct: 73 EALTFNGIDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLAKACHAAGMAFDSAQAHSALYDTLQT 190 Query: 168 SDVYIKMMVGGSQIN 182 +D++ +++ ++ Sbjct: 191 ADLFCELVNRWKRLG 205 >gi|220907711|ref|YP_002483022.1| UvrD/REP helicase [Cyanothece sp. PCC 7425] gi|219864322|gb|ACL44661.1| UvrD/REP helicase [Cyanothece sp. PCC 7425] Length = 829 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 15/222 (6%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R +VFD+ETTG D +IE+ A+ L++ + F ++ E ++HG Sbjct: 457 QQGRLVVFDVETTGFSGAADEVIELAAI-ALEHGQIREEFNRYIRNT--VPVGETQQVHG 513 Query: 65 ITDEFLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 +D+FL +++F EF +F Q A + HN FD+ + A +R+ + R Sbjct: 514 YSDDFLATHGQPAATVFREFCEF--SQGAVLVGHNLGFDIKMVTAHARRVGIE-FPSPRW 570 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM------VG 177 DTL++A R S L +L ++ + H A D+ + ++ Sbjct: 571 EDTLNLAHRFIQSENYKLATLASSLNLSAT--PTHRASDDTRTTVALLEAILPLLDSGRT 628 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKE 219 Q ++ R + ++S R L ++ E Sbjct: 629 ARQALVAAYADQFRPLAAQFAQWRDLSHQLRPAALMEKVLWE 670 >gi|66047122|ref|YP_236963.1| ribonuclease T [Pseudomonas syringae pv. syringae B728a] gi|302184721|ref|ZP_07261394.1| ribonuclease T [Pseudomonas syringae pv. syringae 642] gi|75500938|sp|Q4ZPJ7|RNT_PSEU2 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|63257829|gb|AAY38925.1| Ribonuclease T [Pseudomonas syringae pv. syringae B728a] Length = 225 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + K T+ + P G AL+ Sbjct: 32 PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFT 91 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 GI D L+ S + ++ + A + HNA FD+GF+NA + R+ Sbjct: 92 GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 210 IVNRWKEMG 218 >gi|322516980|ref|ZP_08069870.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus vestibularis ATCC 49124] gi|322124463|gb|EFX95958.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus vestibularis ATCC 49124] Length = 828 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M KN + + D+E T S II++G V + + + F + P+ ++ + Sbjct: 1 MSEKNTNKYAIVDLEATSASS-TACIIQVGIVIMQNGLVIDE-FASDVNPH-QELDDHIV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ ++ ++AHN KFD + L + P Sbjct: 58 HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLLAEALFMEGFELRTP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P+ + L+ L + + ++ H A+ D+ + +M + Sbjct: 116 --RVDTVELAQVFYPTLEQYKLSYLSQVLNLDLA--QAHTAIEDARATGQLLFHLMDKIA 171 Query: 180 QI 181 + Sbjct: 172 SL 173 >gi|94676709|ref|YP_588563.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166228561|sp|Q1LU01|RNT_BAUCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|94219859|gb|ABF14018.1| ribonuclease T [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 218 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +S D ++EI A+ + + KT++T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFNSGTDALLEIAAITLQMDHHGWLKTHKTLHFNIEPFPGSILQP 72 Query: 58 EALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109 EAL +GI D L+ + E + + A +AHNA FD F+ A Sbjct: 73 EALIFNGIDPDNPLRYAVTEREALYELFTIVHQGIKDDDCHRAILVAHNAAFDHSFLMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 R I +P P DT +++ + L C GI + H AL D+ Sbjct: 133 ANRTKIKHNPFHPFATFDTAALSGLVL--GQTVLLKACLTAGIPFNTSEAHSALYDAERT 190 Query: 168 SDVYIKMMVGGSQIN 182 ++++ +++ ++ Sbjct: 191 AELFCELVNRWKRLG 205 >gi|300904709|ref|ZP_07122542.1| exonuclease [Escherichia coli MS 84-1] gi|301304416|ref|ZP_07210528.1| exonuclease [Escherichia coli MS 124-1] gi|300403376|gb|EFJ86914.1| exonuclease [Escherichia coli MS 84-1] gi|300840267|gb|EFK68027.1| exonuclease [Escherichia coli MS 124-1] gi|315257344|gb|EFU37312.1| exonuclease [Escherichia coli MS 85-1] Length = 220 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVN-PMSQLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|254519350|ref|ZP_05131406.1| helicase [Clostridium sp. 7_2_43FAA] gi|226913099|gb|EEH98300.1| helicase [Clostridium sp. 7_2_43FAA] Length = 872 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 8/172 (4%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + IVFD+E+TG D D II+I A+++ Y + +F+ FL +K+ + K+HG Sbjct: 494 QDNIIVFDVESTGTDVTEDEIIQIAAIKINKYGEVIDSFEKFLKN--KKSVESSFKVHGF 551 Query: 66 TDEFLKDK-PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 +DEFL +K + EF DF + A + HN ++D+ +N+EL R N D Sbjct: 552 SDEFLNEKGEDKKKVLKEFIDF--SKGAVIVGHNVQYDINILNSELYRNNLDGTKFKAFY 609 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL I RR + S L +L K + ++ H A+ D SD+ ++ + Sbjct: 610 DTLDIYRRFYTSLPNYKLETLSKIF--ETKNKPSHDAMDDILATSDLLVRAI 659 >gi|294636395|ref|ZP_06714781.1| ribonuclease T [Edwardsiella tarda ATCC 23685] gi|291090340|gb|EFE22901.1| ribonuclease T [Edwardsiella tarda ATCC 23685] Length = 221 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G D+ + ++EI AV L + +T++ + P G SP Sbjct: 13 RFRGFYPVVIDVETAGFDANRNALLEIAAVTLRMNDAGWLETDQCLHFHIEPFEGAILSP 72 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAE 109 EAL +GI + + + +IF +Q A +AHNA FD F+ A Sbjct: 73 EALAFNGIDPHNPLRGAVSEYEALHAIFKVVRKGIKDQECNRAVIVAHNAHFDHSFLMAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L C I H AL D+ Sbjct: 133 AERAKLKRNPFHPFATFDTAALSGLVL--GQTVLAKACISAEIPFDSSQAHSALYDTQQT 190 Query: 168 SDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 ALLFCELVNRWKRLG 205 >gi|189485715|ref|YP_001956656.1| DNA polymerase III epsilon subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287674|dbj|BAG14195.1| DNA polymerase III epsilon subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 198 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 9/162 (5%) Query: 3 RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +K + DIETTGLD K I+EI +++ ++ + P G E K Sbjct: 12 KKLPDNLVFLDIETTGLDPEKGANIVEIAMLKVCGG--IEERYESLVNP-GLPIPSECSK 68 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +H I D+ +K+ PSF I + F + + HNA FD+ F+ EL P+ Sbjct: 69 IHAIYDDMIKNSPSFDEIAGNVFSFIGH--SVVVCHNAPFDLLFVYRELYLAGV-PVKNI 125 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 R IDTL +AR+ N L ++ GI R H A+ D Sbjct: 126 RYIDTLKLARQYFSFDSNKLGNIADAIGIEAELR--HRAMAD 165 >gi|223946833|gb|ACN27500.1| unknown [Zea mays] gi|224030613|gb|ACN34382.1| unknown [Zea mays] Length = 315 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 19/180 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG ++DRIIE +L+ N TFQ + P + +HGI + Sbjct: 115 ILVFDIETTGFSRRDDRIIEFAVRDLMGGK--NSTFQTLINPEK---DVKNTYVHGINNS 169 Query: 69 FL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP 120 L D P F I + + + W+AHN + FDV F+ E +R + Sbjct: 170 MLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGD 229 Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DTL IA++ S+ + L+S L +RY I ++ S H A+ D LS V K+ Sbjct: 230 WLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTG-SAHRAMQDVTTLSYVLQKLT 288 >gi|195646046|gb|ACG42491.1| DNA polymerase III subunit epsilon [Zea mays] Length = 315 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 19/180 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG ++DRIIE +L+ N TFQ + P + +HGI + Sbjct: 115 ILVFDIETTGFSRRDDRIIEFAVRDLMGGK--NSTFQTLINPEK---DVKNTYVHGINNS 169 Query: 69 FL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP 120 L D P F I + + + W+AHN + FDV F+ E +R + Sbjct: 170 MLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGD 229 Query: 121 SRIIDTLSIARRKHPSSRNDLNS-----LCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DTL IA++ S+ + L+S L +RY I ++ S H A+ D LS V K+ Sbjct: 230 WLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTG-SAHRAMQDVTTLSYVLQKLT 288 >gi|199598401|ref|ZP_03211820.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001] gi|258508490|ref|YP_003171241.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus rhamnosus GG] gi|199590720|gb|EDY98807.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001] gi|257148417|emb|CAR87390.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus rhamnosus GG] gi|259649800|dbj|BAI41962.1| DNA helicase [Lactobacillus rhamnosus GG] Length = 933 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 85/207 (41%), Gaps = 13/207 (6%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K DR+I+ G L+ + K +T + P+ R +L GI+ Sbjct: 7 FAVVDLETTGTSVKDGDRMIQFGC-ALVRHGKIIQTISQMINPD-RSVPQTIQRLTGISP 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E L P F + + ++AHN FD F+NAE +RI L IDT+ Sbjct: 65 ERLVAAPYFDEVAPALHQVLTK--TVFVAHNVNFDYPFLNAEFERIGLPKLQL-EAIDTV 121 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI----N 182 +A+ P S L+ L + I H + H A D+ + + +++ + Sbjct: 122 ELAQVLLPEISSFRLSDLTTHFAIQ--HDNPHQADSDATSTAKLLLQLKARFQALPTPTQ 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRD 209 D F +E + I+ R Sbjct: 180 QALIQRHDGFIRETGDYLKMIASPPRP 206 >gi|26987821|ref|NP_743246.1| ribonuclease T [Pseudomonas putida KT2440] gi|37999414|sp|Q88NW8|RNT_PSEPK RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|24982520|gb|AAN66710.1|AE016299_6 ribonuclease T [Pseudomonas putida KT2440] Length = 203 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + K T+ + P G P AL+ Sbjct: 10 PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGANIEPAALEFT 69 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 GI D L+ S S ++ + A + HN+ FD+GF+NA + R + Sbjct: 70 GIKLDHPLRMAVSEESAMTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDL 129 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ I R H A D+ ++++ Sbjct: 130 KRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCG 187 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 188 IVNRWKEMG 196 >gi|226943525|ref|YP_002798598.1| ribonuclease T [Azotobacter vinelandii DJ] gi|226718452|gb|ACO77623.1| ribonuclease T [Azotobacter vinelandii DJ] Length = 202 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN---RTFQVF-LCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI A+ + + F + P G AL+ Sbjct: 10 PVVVDVETGGFNSATDALLEIAAITIGMDEQGLLFPEHSHFFRVEPFEGANIEAAALEFT 69 Query: 64 GI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAELQRI-- 113 GI D L+ S E + + A + HN+ FD+ F+NA + R Sbjct: 70 GIKLDHPLRMAVSEEHALQEIFRGVRKAVKSHGCKRAILVGHNSSFDLAFLNAAVARCDI 129 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 130 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQSAGIEFDGREAHSARYDTEKTAELFCG 187 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 188 IVNRWKEMG 196 >gi|327439003|dbj|BAK15368.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046] Length = 251 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 12/169 (7%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V DIETTG ++ D+I+EI A+++ + +T F F+ P + +HGIT+ Sbjct: 87 YVVVDIETTGGSAARGDKIVEIAALKIR-HGETVDLFHRFVNPEK---PIKNSHIHGITN 142 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDT 126 E +KD+ + S + F F + ++H+ FD F+ E R P +P+ T Sbjct: 143 ERVKDEQTISPVIHAFKAFLG--DLPIVSHHIGFDWYSFLALEFFRNGIRPTNPAA--CT 198 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +AR+ S RN+LN + + Y I + + H A D+ +++ +M Sbjct: 199 VLLARKYLDSPRNNLNVIAETYNIPLLNH--HTADADAICANEILQLIM 245 >gi|309702068|emb|CBJ01382.1| exodeoxyribonuclease X [Escherichia coli ETEC H10407] gi|323937102|gb|EGB33382.1| exonuclease [Escherichia coli E1520] Length = 220 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|187734182|ref|YP_001880647.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94] gi|187431174|gb|ACD10448.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94] Length = 220 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|82543665|ref|YP_407612.1| exodeoxyribonuclease X [Shigella boydii Sb227] gi|81245076|gb|ABB65784.1| conserved hypothetical protein [Shigella boydii Sb227] gi|320177515|gb|EFW52509.1| Exodeoxyribonuclease X [Shigella dysenteriae CDC 74-1112] gi|320183242|gb|EFW58099.1| Exodeoxyribonuclease X [Shigella flexneri CDC 796-83] gi|332096685|gb|EGJ01676.1| exonuclease family protein [Shigella boydii 3594-74] Length = 220 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|323186850|gb|EFZ72169.1| exonuclease family protein [Escherichia coli RN587/1] Length = 220 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|193215454|ref|YP_001996653.1| DNA polymerase III subunit epsilon [Chloroherpeton thalassium ATCC 35110] gi|193088931|gb|ACF14206.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC 35110] Length = 229 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 16/178 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +VFD ETTGLD K D+II IGAV + D++ +F+ + E++ +HGI Sbjct: 43 RFVVFDTETTGLDVKKDKIISIGAVAISDFAIQVADSFETLIRQE-ASGDKESIPVHGIL 101 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L + F + + +AH+A FD+ +N L R D + +IDT Sbjct: 102 KKDLAMAATEQGALESFLSYIA--GSVLVAHHAMFDIEILNQALGRF-FDLKIFNAVIDT 158 Query: 127 LSIARRKHPS---------SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A+R L+ LC+RY I I R H A D+ + + ++ ++ Sbjct: 159 ADFAKRIEKGPFSSQDTKAGDYSLDKLCERYRIPIYDR--HTAPGDAFITAQLFQILL 214 >gi|76798115|ref|ZP_00780369.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae 18RS21] gi|76586523|gb|EAO63027.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae 18RS21] Length = 740 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + +L + P Sbjct: 72 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGCELRTP 129 Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IDT+ +++ +P + L +L + I ++ H A+ D+ + ++IK+ S Sbjct: 130 --RIDTVELSQVFYPCLEKYSLGALAESLNIELTD--AHTAIADARATAQLFIKLKAKIS 185 Query: 180 QI 181 + Sbjct: 186 SL 187 >gi|93006690|ref|YP_581127.1| ribonuclease T [Psychrobacter cryohalolentis K5] gi|92394368|gb|ABE75643.1| RNAse T [Psychrobacter cryohalolentis K5] Length = 246 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 20/191 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R K +V D+ET G +++ D ++EI + +L + F + P G P Sbjct: 33 RFRKFLPVVVDVETAGFNAQTDALLEIACIPVLLNEQGVFYPGEAFNAHIEPFEGANLEP 92 Query: 58 EALKLHGIT-DEFLKDKPSFSS---------IFSEFWDFFNEQNAEWIAHNAKFDVGFIN 107 AL GI + L+ + E + + I HNA FD+ F+N Sbjct: 93 SALAFTGIDPNNPLRKAIAEDEKTALRRIFKGLKEVRRIEDCRQCVLIGHNAHFDLAFLN 152 Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R N +P + DT++++ + L CK G+ H AL D+ Sbjct: 153 AAVLRTNNKSHNPFHNFSVFDTVTLSALAF--GQTVLARACKAAGLDFDGNDAHSALYDT 210 Query: 165 HLLSDVYIKMM 175 ++++ ++ Sbjct: 211 QKTAELFCYIL 221 >gi|309807500|ref|ZP_07701459.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] gi|308169250|gb|EFO71309.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] Length = 234 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 9/171 (5%) Query: 7 MRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M V D+ETTG K +DRII+ G + D T +T+ + P + L GI Sbjct: 2 MFFAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 +++ +FS + + +N ++AHN FD+ F+N EL P + ID Sbjct: 60 SNQEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAID 116 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 T+ +A+ P+ L + I H + H A D+ + + + +K++ Sbjct: 117 TVELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKII 165 >gi|55820864|ref|YP_139306.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311] gi|55736849|gb|AAV60491.1| ATP-dependent DNA helicase, truncated [Streptococcus thermophilus LMG 18311] Length = 557 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K+ + + D+E T S II++G V + + + F + P+ +K + Sbjct: 12 MSEKSTNKYAIVDLEATSASS-TACIIQVGIVIMQNGRVIDE-FASDVNPH-QKLDNHIV 68 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P FS I ++ ++ ++AHN KFD + L + P Sbjct: 69 HLTGITDQQLSQAPDFSEIARTIFELI--EDCIFVAHNVKFDANLLAEALFMEGFELRTP 126 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P+ + +L+ L + + ++ H A+ D+ + + +M + Sbjct: 127 --RVDTVELAQVFYPTLEQYNLSYLSRVLNLDLA--QAHTAIEDARATGKLLLHLMDKIA 182 Query: 180 QI 181 + Sbjct: 183 SL 184 >gi|240143784|ref|ZP_04742385.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] gi|257204219|gb|EEV02504.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] Length = 228 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 4/170 (2%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + + FD ETTGLD + D+IIE+ A + + + P G K + ++L ITD Sbjct: 6 KIVFFDTETTGLDPEKDQIIELAAALVTENGIELKIDAFCKLPEGEKIPEKIVELTHITD 65 Query: 68 EFLKDK-PSFSSIFSEFWDFFNEQN-AEWIAHNAKFDVGFINAELQRINKDPLDPS-RII 124 + L DK + F + + + +AHN +FD+ FI +R P P R + Sbjct: 66 DMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFILEMFKRCGMVPKAPKLRAL 125 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 D+L++ + + + + L + + YG+ ++ H A+ D L +V M Sbjct: 126 DSLTVYKDRA-AYPHKLANAIEHYGLADKVQNSHRAIDDVLALYEVTKAM 174 >gi|309807268|ref|ZP_07701238.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] gi|308166328|gb|EFO68537.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] Length = 233 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K +DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + +N ++AHN FD+ F+N EL P D + IDT+ Sbjct: 69 QEAAKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFD-GKAIDTV 125 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ P+ L + I H + H A D+ + + + +K++ Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKII 172 >gi|241767097|ref|ZP_04764869.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] gi|241362329|gb|EER58323.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii 2AN] Length = 153 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 65/159 (40%), Gaps = 9/159 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 V D ETTG+ + R E+ V LLD FQ + G P +L G Sbjct: 2 PQPIAVIDFETTGMGPGQGARATEVAIV-LLDNGVVVDRFQSLMK-TGAWIPPFITQLTG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+ + P +++ E F NA +AHNA FD F AEL P Sbjct: 60 ITNAMVNAAPQAAAVMREAARFVG--NAPMVAHNAAFDRKFWQAELALAGLPAPHPFA-- 115 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALL 162 T+ ++RR +P + L L +G+ + H AL Sbjct: 116 CTVLLSRRLYPQAPSHKLGMLVDYHGLPRTG-QAHRALA 153 >gi|46198514|ref|YP_004181.1| hypothetical protein TTC0206 [Thermus thermophilus HB27] gi|55980543|ref|YP_143840.1| DNA polymerase III subunit epsilon [Thermus thermophilus HB8] gi|46196136|gb|AAS80554.1| hypothetical conserved protein [Thermus thermophilus HB27] gi|55771956|dbj|BAD70397.1| probable DNA polymerase III epsilon subunit [Thermus thermophilus HB8] Length = 247 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 14/173 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL D +IE+G + L + FQ + P+ R SP +L GI E Sbjct: 74 VVLDLETTGLAPGLDEVIEVGLLRLEGGRRL--PFQSLVRPS-RPPSPFVERLTGIPREA 130 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L++ PS + + + +A + HNA FD+GF+ L+ + +P ++D+L + Sbjct: 131 LEEAPSLEEVLEKAYPLLA--DATLVIHNAAFDLGFLRPALEGLGYRLENP--VVDSLRL 186 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL----SDVYIKMMVG 177 ARR P R L++L + + + R+ H AL D +VY + G Sbjct: 187 ARRGLPGLRRYGLDALSEV--LELPRRTCHRALEDVERTLAVVHEVYYMLTSG 237 >gi|330950000|gb|EGH50260.1| ribonuclease T [Pseudomonas syringae Cit 7] Length = 225 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + K T+ + P G AL+ Sbjct: 32 PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFT 91 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 GI D L+ S + ++ + A + HNA FD+GF+NA + R+ Sbjct: 92 GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 210 IVNRWKEMG 218 >gi|94499178|ref|ZP_01305716.1| ribonuclease T [Oceanobacter sp. RED65] gi|94428810|gb|EAT13782.1| ribonuclease T [Oceanobacter sp. RED65] Length = 222 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 18/205 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S+ D ++EI V + + + P G AL Sbjct: 18 PVVVDVETAGFNSQTDALLEIAMVIMDMDEQGNMLPGPAMSAHIKPFEGANLEQSALDFT 77 Query: 64 GIT--DEFLK---DKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAELQR--I 113 GI D + + P+ +F + + HNA FD+GF+NA ++R I Sbjct: 78 GIDPFDPDRRAEDEGPALKDMFKTIRKAMKVKGCKRAILVGHNAHFDLGFLNAAIERNNI 137 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ L CK GI + S H AL D+ ++++ Sbjct: 138 KRSPFHPFSGFDTATLSGLAL--GHTVLARSCKLAGIDFDNHSAHSALYDTQKTAELFAL 195 Query: 174 MMVGGSQINFGFKTNEDRFFKEEKK 198 ++ Q+ G+ ++ KE +K Sbjct: 196 IVNKWKQLG-GWDWAYEQHVKENEK 219 >gi|82548268|gb|ABB82959.1| putative DNA polymerase type III, exonuclease domain [uncultured organism HF70_19B12] Length = 270 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 10/214 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAV-ELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M + + + FD ETTGL+ + DRI++ + +D S + + P G K + Sbjct: 1 MSLFDGFKVLGFDTETTGLNPRKDRILQYAFIGRDVDGSSVCQV--ELIDP-GIKIPEAS 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118 + +HGI++E + + SF ++ + + A + HN FD FI E R+ + Sbjct: 58 MNVHGISNEDVTGRGSFGMHSNDIAELID--GAIIVGHNINAFDWRFIEFEFMRVGEAVP 115 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG- 177 P ++DTL +AR R+ L LCKRYGI + H A D+ + KM+ G Sbjct: 116 SPYALVDTLELARGLRIPGRHTLGHLCKRYGIGLD--RAHSADADAAATLILLWKMIEGN 173 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 S + G + +D + K + L+R P Sbjct: 174 QSILEDGLEGIQDLCNRNRKSSSIRKEGLRRVLP 207 >gi|124005083|ref|ZP_01689925.1| exonuclease [Microscilla marina ATCC 23134] gi|123989335|gb|EAY28896.1| exonuclease [Microscilla marina ATCC 23134] Length = 245 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 10/168 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K + FD+ETTG D+ NDRI++I ++ D +K + + + P PE K+HG Sbjct: 4 KKPIVFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEK--ERLINPTI-PIPPEVTKVHG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS-RI 123 ++DE +KD P+F + ++F + H FD+ + E R +P + Sbjct: 61 VSDEMVKDAPTFHQVAKSLFEFIRGCDLAGYNH-LNFDMPLLIEEFARAGVVFPEPDVQY 119 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 ID + + HP L++ + Y + H A+ D+ +++ Sbjct: 120 IDVMKVYYHFHP---RTLSAAYQLY-CHKELENAHNAMADTQATLEIF 163 >gi|288800441|ref|ZP_06405899.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] gi|288332654|gb|EFC71134.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039] Length = 285 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 95/224 (42%), Gaps = 15/224 (6%) Query: 2 IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N R +VFD+ETTGLD NDRII+I +++ K R +F+ P + E Sbjct: 1 MKLNLQRPLVVFDLETTGLDLVNDRIIQISYIKVHPDGKEERE-NLFINPQ-KPIPQEVE 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118 L IT++ +KD P+F+ I + ++ ++ N FD+ + E R Sbjct: 59 ALTHITNDMVKDAPTFAEIAQKLYE--KFTGCDFAGFNSNHFDIPMLAEEFSRAGLSYDF 116 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYIKMMV 176 S+++D I H R +L + K Y G + + H A D+ V +M Sbjct: 117 SRSKLVDAQVI---FHKMERRNLAAAYKFYCGRKMEDDFNAHRADEDTEATYRV---LMG 170 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + + + +R + + S R+ RI +E Sbjct: 171 QIERYSAEQQEEAERILPNDIAALAEFSTNNRNVDFAGRIVWKE 214 >gi|308177615|ref|YP_003917021.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] gi|307745078|emb|CBT76050.1| putative DNA polymerase III subunit epsilon [Arthrobacter arilaitensis Re117] Length = 412 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 94/251 (37%), Gaps = 23/251 (9%) Query: 11 VFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ETTGL NDRI EI V + +++ + P R ++ +H I Sbjct: 8 IVDTETTGLFPGGNDRIAEIAIVTMNRQGTIVDSWETLINPQ-RDLGKQS--IHRIQSRD 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS--RIIDTL 127 + D PSF + E + +AHN FD F+ AE ++ + + + T+ Sbjct: 65 VLDAPSFKDLAEELHWRLS--GTVLVAHNLSFDSRFLEAEFRKCGLPVPETFLAQGMCTM 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++ R + L C +GI + + H A+ D+ + + + M Sbjct: 123 RMSHRYLQGAGRSLQDCCDSFGIDL--QQAHSAVGDATATATLLSRYMELDPDEPEWDGR 180 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITK----EELDEH---------DKTIQTLGKN 234 ++P + + + + E+L ++ + Sbjct: 181 LRLAAAGRWFDSMPRSRVAPVKRSQYRTESAGHFLEKLAARLPEFSGTATEENYFAVLDL 240 Query: 235 AIWDRYISSNQ 245 A+ DRY+S+++ Sbjct: 241 ALMDRYVSAHE 251 >gi|139439869|ref|ZP_01773234.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC 25986] gi|133774797|gb|EBA38617.1| Hypothetical protein COLAER_02268 [Collinsella aerofaciens ATCC 25986] Length = 964 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 12/179 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IV D ETTGL +++ +IEI A L +R F F+ P + E +L IT+ Sbjct: 39 IVLDTETTGLSVQDNELIEISAARLSGREVVDR-FDTFVHPK-QLIPAEITELTSITNAD 96 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D PS + DF IAHNA FD FI + +N + ID+L++ Sbjct: 97 VADAPSAVEAVAALADFVG--GCPVIAHNATFDRSFIESVKGGVNVSDI----WIDSLAL 150 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +R P + + L+ + +G H A D L V+ ++V + + G Sbjct: 151 SRIALPRLASHKLSFMADLFGCD---SVSHRANADVDALCGVWRVLLVALTDLPQGLMA 206 >gi|30063256|ref|NP_837427.1| exodeoxyribonuclease X [Shigella flexneri 2a str. 2457T] gi|56479974|ref|NP_707706.2| exodeoxyribonuclease X [Shigella flexneri 2a str. 301] gi|30041508|gb|AAP17236.1| hypothetical protein S1920 [Shigella flexneri 2a str. 2457T] gi|56383525|gb|AAN43413.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|281601259|gb|ADA74243.1| Exodeoxyribonuclease 10 [Shigella flexneri 2002017] gi|313650662|gb|EFS15064.1| exonuclease family protein [Shigella flexneri 2a str. 2457T] gi|332757646|gb|EGJ87979.1| exonuclease family protein [Shigella flexneri 2747-71] gi|332758031|gb|EGJ88357.1| exonuclease family protein [Shigella flexneri K-671] gi|332766817|gb|EGJ97018.1| exonuclease family protein [Shigella flexneri 2930-71] gi|333018617|gb|EGK37911.1| exonuclease family protein [Shigella flexneri K-304] Length = 220 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVN-PMSLLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGLKYSNMALYKTRKLNVQTPLGLHHHRALYDCYITAALLIDIM 151 >gi|167753685|ref|ZP_02425812.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216] gi|167658310|gb|EDS02440.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216] Length = 257 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 14/194 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 M K I FD+ETTG+D DRI+EI V+++ D + RT + P G EA Sbjct: 1 MELNLKRPIIFFDLETTGIDIARDRIVEISMVKVMPDGEEIVRT--RRINP-GMPIPAEA 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-P 117 +HGITDE +KD P F I F + ++ N +FD+ + E R D Sbjct: 58 TAIHGITDEDVKDCPLFPQIAKSLAQFI--EGCDFGGFNSNRFDLPMLVEEFMRAGVDVD 115 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMV 176 + ID +I H + L + K Y G ++ H A D+ +V + Sbjct: 116 FRKRKFIDVQNI---FHKMEQRTLVAAYKFYCGKDLAD--AHSAEADTLATYEVLKAQLD 170 Query: 177 GGSQINFGFKTNED 190 ++ + Sbjct: 171 RYGELQNDVAALAE 184 >gi|163849777|ref|YP_001637820.1| exonuclease RNase T and DNA polymerase III [Methylobacterium extorquens PA1] gi|163661382|gb|ABY28749.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium extorquens PA1] Length = 297 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 10/212 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET + + D +G + ++ + R + P + SP +++HGI Sbjct: 1 MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P+F + +EF + +AHNA FD+G + A L +P+ T Sbjct: 58 PADVRDAPTFPEVIAEFLP--DLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L IARR P + L + R GI H H A D+ +++ + + + Sbjct: 115 LQIARRVFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAALHETGAADIAD 171 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 T P + + R + Sbjct: 172 LARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203 >gi|213162306|ref|ZP_03348016.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 145 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 81/138 (58%), Gaps = 11/138 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+IV D ETTG++ + +IIEIGAVE+++ T F V+L P+ R PEA + Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPD-RLVDPEAFGV 68 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 HGI DEFL DKP F+ + EF D+ + AE + HNA FD+GF++ E + +D + Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYI--RGAELVIHNASFDIGFMDYEFGLLKRDIPKTNT 126 Query: 123 II---DTLSIARRKHPSS 137 D+L++AR+ P Sbjct: 127 FCKVTDSLALARKIVPRQ 144 >gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens NCTC 8239] gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens NCTC 8239] Length = 870 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 8/175 (4%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 K IVFD+E+TG+D D II+I A++L + F+ FL +K ++ + Sbjct: 498 EFEKENIIVFDVESTGVDVIEDEIIQIAAIKLNKKGEVVDKFEKFLKN--KKPVKDSYYV 555 Query: 63 HGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 HG +DE L+ + EF ++ + + + HN ++D+ + +EL+R N Sbjct: 556 HGFSDEMLQKIGEDKEKVLKEFVEY--SKGSIIVGHNVQYDINILCSELERSNLGKPKFK 613 Query: 122 RIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DTL I RR +P + L +L Y H+ H A+ D ++ ++ + Sbjct: 614 TFYDTLDIYRRFYPGNINYKLENLSNVY--DTKHKPSHDAMDDIIATGELLVRAI 666 >gi|159899742|ref|YP_001545989.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC 23779] gi|159892781|gb|ABX05861.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 927 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 13/175 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D+ETTGL+ D IIE+GAV+ ++ T+Q + P + + +L GI Sbjct: 5 YIALDLETTGLEPGRDEIIEVGAVKFR-GNEVLETYQTLVKPK-QVLPIKIARLTGIDAH 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P+F+SI + F I H+ D+ F+ + ++ DT Sbjct: 63 ELTTAPTFNSIGGQLAKFLKS--YPIIGHSVDNDLRFLQQQGLKV------TQPHYDTFD 114 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +A P L+++ + I H H AL D+ V+ ++ ++++ Sbjct: 115 LATLLIPQLPNYSLSTIAEHLQIQ--HPDAHRALADAEASRLVFSALLDKLAELS 167 >gi|154343419|ref|XP_001567655.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania braziliensis MHOM/BR/75/M2904] gi|134064987|emb|CAM43098.1| exonuclease-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 292 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 84/228 (36%), Gaps = 63/228 (27%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELL---------------------------------D 36 +V D+ETTG D I+E+G VEL Sbjct: 53 VVVDLETTGFSPTADEILEVGCVELRWTPSSRTTLTGPKDADPCAPPLEKQGSCGVLEGL 112 Query: 37 YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNA--- 92 +++ R F ++ P + R+ + A +HGIT E ++ + + SE + A Sbjct: 113 WTRGGRVFHRYVRPSHPRRITAAATAVHGITWEKVQHCAPWPVVASELVAYMTLIRADAL 172 Query: 93 ---------------------EWIAHNAKFDVGFINAELQRINKDPLDPSRI--IDTLSI 129 +AHNA FD F+ LQR + T Sbjct: 173 FTKSVQVEAAQHGGHSAVHLPPLVAHNALFDARFLAHHLQRCGYQIFWHPQYPLTCTRQW 232 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSK---HGALLDSHLLSDVYIKM 174 A+ +P N+L++LC I + HGAL D+ L + ++++M Sbjct: 233 AQVAYPHLANNLDTLCAFLSIDGAADRATNGHGALTDATLTALLFLRM 280 >gi|310767562|gb|ADP12512.1| ribonuclease T [Erwinia sp. Ejp617] Length = 219 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCPN-GRKNSP 57 R +V D+ET G D+K + ++EI AV L + + T + P G P Sbjct: 13 RFRGFYPVVIDVETAGFDAKTNALLEIAAVTLKMDSDGWLGKDDTLHFHVEPFAGSVLLP 72 Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109 EAL +GI L+ S + A +AHNA FD+ F+NA Sbjct: 73 EALTFNGIDPTNPLRGAVSEYEALHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT +++ + L C G+ H AL D+ Sbjct: 133 AERASLKRNPFHPFVTFDTAALSGLAL--GQTVLAKACHAAGMAFDSAQAHSALYDTLQT 190 Query: 168 SDVYIKMMVGGSQIN 182 +D++ +++ ++ Sbjct: 191 ADLFCELVNRWKRLG 205 >gi|16129797|ref|NP_416358.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655] gi|74311833|ref|YP_310252.1| exodeoxyribonuclease X [Shigella sonnei Ss046] gi|82776429|ref|YP_402778.1| exodeoxyribonuclease X [Shigella dysenteriae Sd197] gi|89108684|ref|AP_002464.1| DNA exonuclease X [Escherichia coli str. K-12 substr. W3110] gi|91211067|ref|YP_541053.1| exodeoxyribonuclease X [Escherichia coli UTI89] gi|110641962|ref|YP_669692.1| exodeoxyribonuclease X [Escherichia coli 536] gi|117623997|ref|YP_852910.1| exodeoxyribonuclease X [Escherichia coli APEC O1] gi|157159299|ref|YP_001463146.1| exodeoxyribonuclease X [Escherichia coli E24377A] gi|161486210|ref|NP_754148.2| exodeoxyribonuclease X [Escherichia coli CFT073] gi|170081500|ref|YP_001730820.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B] gi|170681411|ref|YP_001743401.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5] gi|188495324|ref|ZP_03002594.1| exodeoxyribonuclease X [Escherichia coli 53638] gi|191168492|ref|ZP_03030279.1| exodeoxyribonuclease X [Escherichia coli B7A] gi|191172968|ref|ZP_03034502.1| exodeoxyribonuclease X [Escherichia coli F11] gi|193066046|ref|ZP_03047103.1| exodeoxyribonuclease X [Escherichia coli E22] gi|194429668|ref|ZP_03062186.1| exodeoxyribonuclease X [Escherichia coli B171] gi|194439062|ref|ZP_03071145.1| exodeoxyribonuclease X [Escherichia coli 101-1] gi|209919210|ref|YP_002293294.1| exodeoxyribonuclease X [Escherichia coli SE11] gi|218554418|ref|YP_002387331.1| exodeoxyribonuclease X [Escherichia coli IAI1] gi|218558708|ref|YP_002391621.1| exodeoxyribonuclease X [Escherichia coli S88] gi|218689782|ref|YP_002397994.1| exodeoxyribonuclease X [Escherichia coli ED1a] gi|218695410|ref|YP_002403077.1| exodeoxyribonuclease X [Escherichia coli 55989] gi|218699585|ref|YP_002407214.1| exodeoxyribonuclease X [Escherichia coli IAI39] gi|218705343|ref|YP_002412862.1| exodeoxyribonuclease X [Escherichia coli UMN026] gi|227885729|ref|ZP_04003534.1| exodeoxyribonuclease X [Escherichia coli 83972] gi|237705796|ref|ZP_04536277.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA] gi|238901059|ref|YP_002926855.1| DNA exonuclease X [Escherichia coli BW2952] gi|256017967|ref|ZP_05431832.1| exodeoxyribonuclease X [Shigella sp. D9] gi|256022492|ref|ZP_05436357.1| exodeoxyribonuclease X [Escherichia sp. 4_1_40B] gi|260844189|ref|YP_003221967.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009] gi|260855770|ref|YP_003229661.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368] gi|260868365|ref|YP_003234767.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128] gi|291283026|ref|YP_003499844.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615] gi|293405339|ref|ZP_06649331.1| exodeoxyribonuclease X [Escherichia coli FVEC1412] gi|293410154|ref|ZP_06653730.1| conserved hypothetical protein [Escherichia coli B354] gi|293415159|ref|ZP_06657802.1| exodeoxyribonuclease X [Escherichia coli B185] gi|293446216|ref|ZP_06662638.1| exodeoxyribonuclease X [Escherichia coli B088] gi|298380980|ref|ZP_06990579.1| exodeoxyribonuclease X [Escherichia coli FVEC1302] gi|300816266|ref|ZP_07096488.1| exonuclease [Escherichia coli MS 107-1] gi|300824216|ref|ZP_07104334.1| exonuclease [Escherichia coli MS 119-7] gi|300899088|ref|ZP_07117373.1| exonuclease [Escherichia coli MS 198-1] gi|300917583|ref|ZP_07134236.1| exonuclease [Escherichia coli MS 115-1] gi|300924914|ref|ZP_07140845.1| exonuclease [Escherichia coli MS 182-1] gi|300928872|ref|ZP_07144378.1| exonuclease [Escherichia coli MS 187-1] gi|300951460|ref|ZP_07165297.1| exonuclease [Escherichia coli MS 116-1] gi|300956649|ref|ZP_07168925.1| exonuclease [Escherichia coli MS 175-1] gi|300982052|ref|ZP_07175871.1| exonuclease [Escherichia coli MS 200-1] gi|300994204|ref|ZP_07180761.1| exonuclease [Escherichia coli MS 45-1] gi|301025418|ref|ZP_07188970.1| exonuclease [Escherichia coli MS 196-1] gi|301050807|ref|ZP_07197661.1| exonuclease [Escherichia coli MS 185-1] gi|301327607|ref|ZP_07220824.1| exonuclease [Escherichia coli MS 78-1] gi|306814328|ref|ZP_07448494.1| exodeoxyribonuclease X [Escherichia coli NC101] gi|307138504|ref|ZP_07497860.1| exodeoxyribonuclease X [Escherichia coli H736] gi|307314078|ref|ZP_07593690.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W] gi|309789238|ref|ZP_07683831.1| exonuclease family protein [Shigella dysenteriae 1617] gi|309794224|ref|ZP_07688648.1| exonuclease [Escherichia coli MS 145-7] gi|312969882|ref|ZP_07784065.1| exonuclease family protein [Escherichia coli 1827-70] gi|331642455|ref|ZP_08343590.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H736] gi|331653250|ref|ZP_08354255.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M718] gi|331668536|ref|ZP_08369384.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA271] gi|331673376|ref|ZP_08374144.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA280] gi|331677723|ref|ZP_08378398.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H591] gi|331683348|ref|ZP_08383949.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H299] gi|332279002|ref|ZP_08391415.1| exodeoxyribonuclease X [Shigella sp. D9] gi|84027958|sp|P0AEK1|EXOX_ECOL6 RecName: Full=Exodeoxyribonuclease 10; AltName: Full=Exodeoxyribonuclease X; Short=Exo X; Short=Exonuclease X gi|84027959|sp|P0AEK0|EXOX_ECOLI RecName: Full=Exodeoxyribonuclease 10; AltName: Full=Exodeoxyribonuclease X; Short=Exo X; Short=Exonuclease X gi|6166471|gb|AAF04847.1|AF194116_1 exonuclease X [Escherichia coli] gi|1788149|gb|AAC74914.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655] gi|73855310|gb|AAZ88017.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81240577|gb|ABB61287.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|85675148|dbj|BAE76547.1| DNA exonuclease X [Escherichia coli str. K12 substr. W3110] gi|91072641|gb|ABE07522.1| exodeoxyribonuclease X [Escherichia coli UTI89] gi|110343554|gb|ABG69791.1| exodeoxyribonuclease X [Escherichia coli 536] gi|115513121|gb|ABJ01196.1| exodeoxyribonuclease X [Escherichia coli APEC O1] gi|157081329|gb|ABV21037.1| exodeoxyribonuclease X [Escherichia coli E24377A] gi|169889335|gb|ACB03042.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B] gi|170519129|gb|ACB17307.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5] gi|188490523|gb|EDU65626.1| exodeoxyribonuclease X [Escherichia coli 53638] gi|190901445|gb|EDV61207.1| exodeoxyribonuclease X [Escherichia coli B7A] gi|190906679|gb|EDV66284.1| exodeoxyribonuclease X [Escherichia coli F11] gi|192926283|gb|EDV80920.1| exodeoxyribonuclease X [Escherichia coli E22] gi|194412310|gb|EDX28614.1| exodeoxyribonuclease X [Escherichia coli B171] gi|194422021|gb|EDX38025.1| exodeoxyribonuclease X [Escherichia coli 101-1] gi|209767638|gb|ACI82131.1| exonuclease X [Escherichia coli] gi|209767644|gb|ACI82134.1| exonuclease X [Escherichia coli] gi|209912469|dbj|BAG77543.1| DNA exonuclease X [Escherichia coli SE11] gi|218352142|emb|CAU97881.1| DNA exonuclease X [Escherichia coli 55989] gi|218361186|emb|CAQ98770.1| DNA exonuclease X [Escherichia coli IAI1] gi|218365477|emb|CAR03204.1| DNA exonuclease X [Escherichia coli S88] gi|218369571|emb|CAR17340.1| DNA exonuclease X [Escherichia coli IAI39] gi|218427346|emb|CAR08241.2| DNA exonuclease X [Escherichia coli ED1a] gi|218432440|emb|CAR13333.1| DNA exonuclease X [Escherichia coli UMN026] gi|222033593|emb|CAP76334.1| exodeoxyribonuclease 10 [Escherichia coli LF82] gi|226900553|gb|EEH86812.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA] gi|227837302|gb|EEJ47768.1| exodeoxyribonuclease X [Escherichia coli 83972] gi|238860815|gb|ACR62813.1| DNA exonuclease X [Escherichia coli BW2952] gi|257754419|dbj|BAI25921.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368] gi|257759336|dbj|BAI30833.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009] gi|257764721|dbj|BAI36216.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128] gi|260449035|gb|ACX39457.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli DH1] gi|281178912|dbj|BAI55242.1| DNA exonuclease X [Escherichia coli SE15] gi|284921762|emb|CBG34835.1| exodeoxyribonuclease X [Escherichia coli 042] gi|290762899|gb|ADD56860.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615] gi|291323046|gb|EFE62474.1| exodeoxyribonuclease X [Escherichia coli B088] gi|291427547|gb|EFF00574.1| exodeoxyribonuclease X [Escherichia coli FVEC1412] gi|291432807|gb|EFF05786.1| exodeoxyribonuclease X [Escherichia coli B185] gi|291470622|gb|EFF13106.1| conserved hypothetical protein [Escherichia coli B354] gi|294490108|gb|ADE88864.1| exodeoxyribonuclease X [Escherichia coli IHE3034] gi|298278422|gb|EFI19936.1| exodeoxyribonuclease X [Escherichia coli FVEC1302] gi|299880094|gb|EFI88305.1| exonuclease [Escherichia coli MS 196-1] gi|300297496|gb|EFJ53881.1| exonuclease [Escherichia coli MS 185-1] gi|300307354|gb|EFJ61874.1| exonuclease [Escherichia coli MS 200-1] gi|300316527|gb|EFJ66311.1| exonuclease [Escherichia coli MS 175-1] gi|300357297|gb|EFJ73167.1| exonuclease [Escherichia coli MS 198-1] gi|300406332|gb|EFJ89870.1| exonuclease [Escherichia coli MS 45-1] gi|300415183|gb|EFJ98493.1| exonuclease [Escherichia coli MS 115-1] gi|300418932|gb|EFK02243.1| exonuclease [Escherichia coli MS 182-1] gi|300449289|gb|EFK12909.1| exonuclease [Escherichia coli MS 116-1] gi|300463162|gb|EFK26655.1| exonuclease [Escherichia coli MS 187-1] gi|300523287|gb|EFK44356.1| exonuclease [Escherichia coli MS 119-7] gi|300530956|gb|EFK52018.1| exonuclease [Escherichia coli MS 107-1] gi|300845856|gb|EFK73616.1| exonuclease [Escherichia coli MS 78-1] gi|305852487|gb|EFM52938.1| exodeoxyribonuclease X [Escherichia coli NC101] gi|306906216|gb|EFN36733.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W] gi|307553862|gb|ADN46637.1| exodeoxyribonuclease X [Escherichia coli ABU 83972] gi|307626675|gb|ADN70979.1| exodeoxyribonuclease X [Escherichia coli UM146] gi|308122129|gb|EFO59391.1| exonuclease [Escherichia coli MS 145-7] gi|308922992|gb|EFP68506.1| exonuclease family protein [Shigella dysenteriae 1617] gi|310338167|gb|EFQ03256.1| exonuclease family protein [Escherichia coli 1827-70] gi|312946443|gb|ADR27270.1| exodeoxyribonuclease X [Escherichia coli O83:H1 str. NRG 857C] gi|315061147|gb|ADT75474.1| DNA exonuclease X [Escherichia coli W] gi|315136487|dbj|BAJ43646.1| exodeoxyribonuclease 10 [Escherichia coli DH1] gi|315286537|gb|EFU45972.1| exonuclease [Escherichia coli MS 110-3] gi|315290373|gb|EFU49749.1| exonuclease [Escherichia coli MS 153-1] gi|320194441|gb|EFW69072.1| Exodeoxyribonuclease X [Escherichia coli WV_060327] gi|320198024|gb|EFW72632.1| Exodeoxyribonuclease X [Escherichia coli EC4100B] gi|320641696|gb|EFX11084.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. G5101] gi|320647056|gb|EFX15889.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. 493-89] gi|320652339|gb|EFX20637.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. H 2687] gi|320657940|gb|EFX25702.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658513|gb|EFX26207.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. USDA 5905] gi|320668411|gb|EFX35238.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. LSU-61] gi|323152600|gb|EFZ38877.1| exonuclease family protein [Escherichia coli EPECa14] gi|323158672|gb|EFZ44686.1| exonuclease family protein [Escherichia coli E128010] gi|323166600|gb|EFZ52360.1| exonuclease family protein [Shigella sonnei 53G] gi|323180624|gb|EFZ66169.1| exonuclease family protein [Escherichia coli 1180] gi|323186407|gb|EFZ71755.1| exonuclease family protein [Escherichia coli 1357] gi|323378276|gb|ADX50544.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli KO11] gi|323940489|gb|EGB36680.1| exonuclease [Escherichia coli E482] gi|323948271|gb|EGB44259.1| exonuclease [Escherichia coli H120] gi|323952346|gb|EGB48219.1| exonuclease [Escherichia coli H252] gi|323956475|gb|EGB52217.1| exonuclease [Escherichia coli H263] gi|323968612|gb|EGB64018.1| exonuclease [Escherichia coli M863] gi|323972649|gb|EGB67852.1| exonuclease [Escherichia coli TA007] gi|323977972|gb|EGB73058.1| exonuclease [Escherichia coli TW10509] gi|324007199|gb|EGB76418.1| exonuclease [Escherichia coli MS 57-2] gi|324012816|gb|EGB82035.1| exonuclease [Escherichia coli MS 60-1] gi|324018034|gb|EGB87253.1| exonuclease [Escherichia coli MS 117-3] gi|324118904|gb|EGC12793.1| exonuclease [Escherichia coli E1167] gi|327252967|gb|EGE64621.1| exonuclease family protein [Escherichia coli STEC_7v] gi|331039253|gb|EGI11473.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H736] gi|331049348|gb|EGI21420.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M718] gi|331063730|gb|EGI35641.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA271] gi|331069574|gb|EGI40961.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA280] gi|331074183|gb|EGI45503.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H591] gi|331079563|gb|EGI50760.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli H299] gi|332101354|gb|EGJ04700.1| exodeoxyribonuclease X [Shigella sp. D9] gi|332343569|gb|AEE56903.1| exonuclease [Escherichia coli UMNK88] Length = 220 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|194433962|ref|ZP_03066234.1| exodeoxyribonuclease X [Shigella dysenteriae 1012] gi|194417834|gb|EDX33931.1| exodeoxyribonuclease X [Shigella dysenteriae 1012] gi|320182620|gb|EFW57509.1| Exodeoxyribonuclease X [Shigella boydii ATCC 9905] gi|332095285|gb|EGJ00309.1| exonuclease family protein [Shigella dysenteriae 155-74] Length = 220 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|237733311|ref|ZP_04563792.1| 3'-5' exonuclease [Mollicutes bacterium D7] gi|229383692|gb|EEO33783.1| 3'-5' exonuclease [Coprobacillus sp. D7] Length = 443 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 10/166 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ET + +N+ I IG + +D T + P ++L GIT E + Sbjct: 7 FVDVETP--NYQNNSISSIGVI-NVDGDGVVTTKYFLVDPEAH-FDRFNIELTGITPEMV 62 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D+P+F ++SE +F N+ +AHNA FD+G I+A LQR + P+ P T I+ Sbjct: 63 ADQPNFKEVWSEIEPYF--TNSLVVAHNAVFDLGVISACLQRYDL-PIFPIFYTCTYRIS 119 Query: 131 RRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R PS+ LN L Y +T+ + H AL DS +++ ++ Sbjct: 120 RALKIPSNSYKLNDLSSYYHVTLDNH--HNALADSKACMEIFYYLL 163 >gi|227485452|ref|ZP_03915768.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Anaerococcus lactolyticus ATCC 51172] gi|227236582|gb|EEI86597.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Anaerococcus lactolyticus ATCC 51172] Length = 295 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I+ D+ETTGLD NDRIIEIGA+++ K N+ + + K S + + GI+DE Sbjct: 129 YIIIDLETTGLDPINDRIIEIGAIKI---GKENKEYSSIIW-QDIKLSEKISNITGISDE 184 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K + +EF DF E + +N FD+ FIN L+R K + Sbjct: 185 DIKKGKDEKNAINEFIDFIGED--TLVGYNINFDIKFINESLKRQEKPKIKNMTYDVMQY 242 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + K L ++ K YGI H AL D ++ + K+ Sbjct: 243 VKNDKLFLKNYKLETVIKEYGIN--KNVPHRALEDVKIIQKLIAKL 286 >gi|104780415|ref|YP_606913.1| ribonuclease T [Pseudomonas entomophila L48] gi|166200016|sp|Q1IE06|RNT_PSEE4 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|95109402|emb|CAK14102.1| ribonuclease T [Pseudomonas entomophila L48] Length = 224 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + K T+ + P G AL+ Sbjct: 31 PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFYRVEPFEGANIEAAALEFT 90 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 GI D L+ S S ++ + A + HN+ FD+GF+NA + R I Sbjct: 91 GIKLDHPLRMAVSEESALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDI 150 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ I R H A D+ ++++ Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCG 208 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 209 IVNRWKEMG 217 >gi|332090017|gb|EGI95117.1| exonuclease family protein [Shigella boydii 5216-82] Length = 220 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|329896219|ref|ZP_08271397.1| Ribonuclease T [gamma proteobacterium IMCC3088] gi|328921890|gb|EGG29257.1| Ribonuclease T [gamma proteobacterium IMCC3088] Length = 211 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 17/193 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKNSP 57 R ++ D+ET G +++ D ++E+ A V + + + T + P G Sbjct: 13 RFRGFLPVIIDVETGGFNAQTDALLEVAATIVRMEPDGELYVHETVHHNVVPFEGANLEA 72 Query: 58 EALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 AL+ GI E L + + SIF N + HNA FD GFINA Sbjct: 73 SALEFTGIDPYHPFREALSEADALESIFKAIRKEIKSTNCTRAVLVGHNAHFDAGFINAA 132 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 ++R ++P P DT ++A + L C + GI +++ H A D+ Sbjct: 133 VERTGLKRNPFHPFSYFDTATLAGLAF--GQTVLAKACLQAGIEFDNKAAHSAAYDADRT 190 Query: 168 SDVYIKMMVGGSQ 180 + ++ ++ Q Sbjct: 191 AHLFCNIVNIWRQ 203 >gi|283832758|ref|ZP_06352499.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220] gi|291072441|gb|EFE10550.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220] Length = 220 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVVDGKIVN-PMSNLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I +++ + ++AHNA FD + P P I T+ ++ Sbjct: 59 ADKPWIEDIIPQYY-----GSDWYVAHNASFDRRVL----------PEMPGEWICTMKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K +++ + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPAGLHHHRALYDCYITAALLIDIM 151 >gi|257461276|ref|ZP_05626373.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268] gi|257441304|gb|EEV16450.1| DNA polymerase III subunit epsilon [Campylobacter gracilis RM3268] Length = 268 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 13/185 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 DIET G N +IIEIGA++ + +R F+ F+ +L GI + Sbjct: 73 FCFVDIETNGG-LSNGQIIEIGAIKTRGTQELDR-FESFV--YAPVVPENITELTGICAD 128 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L P +S+ F F ++ ++AHN KFD GFI+A LQ+ L +R + T+ Sbjct: 129 DLVGAPPLASVLERFRLFLG--DSVFVAHNVKFDYGFIDASLQKCGFGMLL-NRRLCTVE 185 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +ARR + R L SL + G+ H H AL D+ +++ S++ + ++ Sbjct: 186 LARRTIEAQRYGLGSLKELLGVQNVH---HRALSDAVSCFEIFK---FALSRLPWSVQST 239 Query: 189 EDRFF 193 ED Sbjct: 240 EDLIL 244 >gi|290475494|ref|YP_003468382.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Xenorhabdus bovienii SS-2004] gi|289174815|emb|CBJ81616.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Xenorhabdus bovienii SS-2004] Length = 208 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI A+ L + T + P G P AL Sbjct: 11 PVVIDVETGGFNAQTDALLEIAAITLKMDEEGWLMPADTLHFHIDPFEGANLDPAALAFT 70 Query: 64 GITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAELQR--I 113 GI L+ S + + + A +AHNA FD F+ A +R + Sbjct: 71 GIDPTNPLRGAVSEYTALHAIFKMIRKGMKDNNCNRAIIVAHNASFDHNFVMAAAERSGL 130 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT +++ + L C I H AL D+ + ++ + Sbjct: 131 KRNPFHPFATFDTAALSGLVL--GQTILAKACITAEIPFDSNQAHSALYDTDRTALLFCE 188 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 189 LVNRWKRLG 197 >gi|108563906|ref|YP_628222.1| DNA polymerase III subunit epsilon [Helicobacter pylori HPAG1] gi|107837679|gb|ABF85548.1| DNA polymerase III epsilon subunit [Helicobacter pylori HPAG1] Length = 323 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 87/217 (40%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 168 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 224 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G I H A D+ ++ ++ I+ Sbjct: 225 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 282 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + ++T P SL +R K LF I Sbjct: 283 FSKCANTLIKRPPRARHQETPPPFSLFERTKGLFNII 319 >gi|77408519|ref|ZP_00785256.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae COH1] gi|77172876|gb|EAO76008.1| DnaQ family exonuclease/DinG family helicase, putative [Streptococcus agalactiae COH1] Length = 835 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + +L + P Sbjct: 72 HLTGITDKQLVKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGFELRTP 129 Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IDT+ +++ +P + L +L + I ++ H A+ D+ + ++IK+ S Sbjct: 130 --RIDTVELSQVFYPCLEKYSLGALAESLNIELTD--AHTAIADARATAQLFIKLKAKIS 185 Query: 180 QI 181 + Sbjct: 186 SL 187 >gi|87121336|ref|ZP_01077226.1| ribonuclease T [Marinomonas sp. MED121] gi|86163493|gb|EAQ64768.1| ribonuclease T [Marinomonas sp. MED121] Length = 216 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 20/197 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLDYSK--TNRTFQVFLCP-NGRKN 55 K++ R +V D+ET G ++K D ++EI A + + + + + T + + P G Sbjct: 5 KDRFRGFLPVVIDVETAGFNNKTDALLEIAASILRMDENGELYIHETIEFNVRPFEGANL 64 Query: 56 SPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFIN 107 AL+ GI + + + IFS+ + A + HNA FD GF+N Sbjct: 65 EKSALEFTGIDPFDPERKDVVEAEVLGQIFSKVRKELKSVGCKRAILVGHNAAFDHGFLN 124 Query: 108 AELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A ++R ++P P DT S+A + L C+ I S+ H A D+ Sbjct: 125 AAIERCDIKRNPFHPFSSFDTASLAGLAF--GQTVLAKACEAAAIPFSNAEAHSAKYDTE 182 Query: 166 LLSDVYIKMMVGGSQIN 182 ++++ +++ ++ Sbjct: 183 KTAELFCEIVNRWKRLG 199 >gi|271965325|ref|YP_003339521.1| DNA polymerase III subunit epsilon-like protein [Streptosporangium roseum DSM 43021] gi|270508500|gb|ACZ86778.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease-like protein [Streptosporangium roseum DSM 43021] Length = 407 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 7/150 (4%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTGL NDR+IEIG V L + + + P GR P+ +HGIT Sbjct: 10 YAVIDLETTGLRPSWNDRVIEIGIVHLDLSGEVTGEWATLVNP-GRDLGPQ--HIHGITA 66 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRIIDT 126 ++ P+F I + + + AHN FD GF++ E R+ D PLD + + T Sbjct: 67 ADIRHAPAFGEIAGAVAERLDGR--VVAAHNLPFDAGFLSHEFGRLGLDTPLDHTAGVCT 124 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRS 156 ++ + + P + L + C R G++++ Sbjct: 125 MAWSAQFLPGAPRSLAACCARAGVSLNGHH 154 >gi|170019811|ref|YP_001724765.1| exodeoxyribonuclease X [Escherichia coli ATCC 8739] gi|169754739|gb|ACA77438.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli ATCC 8739] Length = 220 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D K + + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDG-KIVKPMSHLVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|71737285|ref|YP_276026.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A] gi|257486623|ref|ZP_05640664.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624955|ref|ZP_06457909.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650468|ref|ZP_06481811.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 2250] gi|298488734|ref|ZP_07006763.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|123635391|sp|Q48F11|RNT_PSE14 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|71557838|gb|AAZ37049.1| ribonuclease T [Pseudomonas syringae pv. phaseolicola 1448A] gi|298156807|gb|EFH97898.1| Ribonuclease T [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325627|gb|EFW81689.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. B076] gi|320327089|gb|EFW83103.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4] gi|330867245|gb|EGH01954.1| ribonuclease T [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330879065|gb|EGH13214.1| ribonuclease T [Pseudomonas syringae pv. glycinea str. race 4] gi|330889564|gb|EGH22225.1| ribonuclease T [Pseudomonas syringae pv. mori str. 301020] gi|331010105|gb|EGH90161.1| ribonuclease T [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 225 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + + T+ + P G AL+ Sbjct: 32 PVVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFEGANIEAAALEFT 91 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 GI D L+ S + ++ + A + HNA FD+GF+NA + R+ Sbjct: 92 GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 210 IVNRWKEMG 218 >gi|319744611|gb|EFV96961.1| DNA polymerase III [Streptococcus agalactiae ATCC 13813] Length = 821 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 10/182 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 1 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + +L + P Sbjct: 58 HLTGITDKQLVKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEQLFLEGFELRTP 115 Query: 121 SRIIDTLSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 IDT+ +++ +P + L +L + I ++ H A+ D+ + ++IK+ S Sbjct: 116 --RIDTVELSQVFYPCLEKYSLGALAESLNIELTD--AHTAIADARATAQLFIKLKAKIS 171 Query: 180 QI 181 + Sbjct: 172 SL 173 >gi|15616807|ref|NP_240019.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681560|ref|YP_002467946.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682118|ref|YP_002468502.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471245|ref|ZP_05635244.1| ribonuclease T [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11387052|sp|P57285|RNT_BUCAI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|25356015|pir||A84952 ribonuclease T [imported] - Buchnera sp. (strain APS) gi|10038870|dbj|BAB12905.1| ribonuclease T [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621851|gb|ACL30007.1| ribonuclease T [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624403|gb|ACL30558.1| ribonuclease T [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085930|gb|ADP66012.1| ribonuclease T [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086501|gb|ADP66582.1| ribonuclease T [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087083|gb|ADP67163.1| ribonuclease T [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087635|gb|ADP67714.1| ribonuclease T [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 221 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGR 53 + N+ R +V DIET G ++ D ++EI + L T + P G Sbjct: 9 LLSNRFRTFYPVVIDIETAGFNANTDAVLEIAIITLKMDELGWLHKEDTLHFHIEPFKGS 68 Query: 54 KNSPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGF 105 + +A+ + I + +K + SI + + Q +AHNA FD F Sbjct: 69 IINSDAIAFNKIDPFNPLRGAISEKIAIQSILKKVRNGIKIQGCSRGIVVAHNANFDHNF 128 Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A +QR I +P P DT +++ + L+ CK G++ + H AL D Sbjct: 129 LMAAIQRVKIKNNPFHPFATFDTAALSGLV--VGQTVLSKACKAIGLSFDNHQAHSALYD 186 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ +++ ++ Sbjct: 187 TLQTANLFCELVNRWKRLG 205 >gi|300938801|ref|ZP_07153512.1| exonuclease [Escherichia coli MS 21-1] gi|300456266|gb|EFK19759.1| exonuclease [Escherichia coli MS 21-1] Length = 220 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDIIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|269837031|ref|YP_003319259.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] gi|269786294|gb|ACZ38437.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter thermophilus DSM 20745] Length = 966 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 86/208 (41%), Gaps = 24/208 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+E TG+D + D IIEI A++ + +R ++ + P G L GI + Sbjct: 5 YVALDLEATGMDPERDEIIEIAAIKFRNDRVLDR-WESLVRPRG-PIPFNITSLTGIGAK 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F + DF +N + + +FD+ + R+ + + DT Sbjct: 63 DVRRAPIFPVVAPRLRDFV--RNHPIVGQSPEFDIQMLAGAGLRL------QNPLYDTFQ 114 Query: 129 IARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM-----------MV 176 +A P +L ++ R G+++ H+ H A+ D V++ + + Sbjct: 115 LATILIPDLPAYNLATIAARLGVSVPHQ--HRAMADVETTMAVFLGLQDILLSHDAETLA 172 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNIS 204 +++ + R F E ++ V ++ Sbjct: 173 RLAELARVAGSPLARLFAEARREVASLD 200 >gi|215487057|ref|YP_002329488.1| exodeoxyribonuclease X [Escherichia coli O127:H6 str. E2348/69] gi|312967045|ref|ZP_07781263.1| exonuclease family protein [Escherichia coli 2362-75] gi|331647439|ref|ZP_08348531.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M605] gi|331657890|ref|ZP_08358852.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA206] gi|215265129|emb|CAS09517.1| DNA exonuclease X [Escherichia coli O127:H6 str. E2348/69] gi|312288509|gb|EFR16411.1| exonuclease family protein [Escherichia coli 2362-75] gi|315299931|gb|EFU59169.1| exonuclease [Escherichia coli MS 16-3] gi|330911653|gb|EGH40163.1| exodeoxyribonuclease X [Escherichia coli AA86] gi|331043163|gb|EGI15301.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli M605] gi|331056138|gb|EGI28147.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA206] Length = 220 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKIRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|33596994|ref|NP_884637.1| putative exonuclease [Bordetella parapertussis 12822] gi|33566445|emb|CAE37698.1| putative exonuclease [Bordetella parapertussis] Length = 247 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 10/168 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R +V D+ETTGL I+E AV + + R F + +GR P + Sbjct: 73 LRALDGPFVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGR-VPPFISR 131 Query: 62 LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GIT + +D F +F DF + HNA FD F+ A R Sbjct: 132 LTGITQAEVERDGVPVRQAFGDFLDFI--EGGPLFFHNASFDRRFLQAAADRTGLPF--E 187 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 ++ TL +AR+ P + LN L + G + H AL D Sbjct: 188 AQTHCTLMLARQAWPELPSHKLNVLARHLG---ASEPTHRALADVRTT 232 >gi|331663335|ref|ZP_08364245.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA143] gi|331059134|gb|EGI31111.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X) (Exo X) [Escherichia coli TA143] Length = 220 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|116513938|ref|YP_812844.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093253|gb|ABJ58406.1| 3'-5' exonuclease with to CRISPR-associated protein from COG1343 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 290 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 13/172 (7%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + R + DIETTGL++++D+I+ IGAV+ F + + ++L GI Sbjct: 123 QKRFVAVDIETTGLNTESDQILSIGAVKHD-----GIEFYRLIK-QDIDVPKQIVELTGI 176 Query: 66 TDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 T E L K+ E DF N + +N +FD F+N + ++ L + I Sbjct: 177 TSEMLSKEGVPLQDALEELTDFVG--NVPIVGYNFRFDSVFLNRDYRKCGMQEL-KNEIK 233 Query: 125 DTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 D L + +R+ L ++ YGI ++ H A+ D+ ++ +K++ Sbjct: 234 DLLPVVKRREKFLDNYKLQTVLSNYGIE--NKVPHNAVSDARATKELAMKLI 283 >gi|147814790|emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera] Length = 340 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 85/206 (41%), Gaps = 23/206 (11%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 IVFD ETTGL NDRIIEIG +L N TFQ + P +P +HGIT Sbjct: 137 IVFDTETTGLSRANDRIIEIGLQDL--GGGENSTFQTLVNPERIVPNP---HVHGITTYM 191 Query: 70 L--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDPS 121 + D P + + + + W+AHN + FDV F+ E R N + Sbjct: 192 VNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPNW 251 Query: 122 RIIDTLSIARRKHPSSRN------DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R +DTL +AR S+ + L +L + + I + H L D + LS + + Sbjct: 252 RFMDTLPLAREFIKSAGSDLPSGASLQALREYFRIPLVG-PAHRVLSDVYTLSQILQMLT 310 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVP 201 + DR F P Sbjct: 311 FN---LKVSVANLLDRSFTASDIINP 333 >gi|218528419|ref|YP_002419235.1| exonuclease RNase T and DNA polymerase III [Methylobacterium chloromethanicum CM4] gi|218520722|gb|ACK81307.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium chloromethanicum CM4] Length = 297 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 10/212 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET + + D +G + ++ + R + P + SP +++HGI Sbjct: 1 MKVVAIDFETA--NERRDSACAVG-LAWIEGGRVARRESRLIRPPQLRFSPGNIRVHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P+F + +EF + +AHNA FD+G + A L +P+ T Sbjct: 58 PADVRDAPTFPEVIAEFLP--DLSGGLMLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L IARR P + L + R GI H H A D+ +++ + + + Sbjct: 115 LQIARRVFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAALRETGAADIAD 171 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 T P + + R + Sbjct: 172 LARGLGLTPIRALTTPRRDMTRSTSAKALRAS 203 >gi|33600836|ref|NP_888396.1| putative exonuclease [Bordetella bronchiseptica RB50] gi|33568436|emb|CAE32348.1| putative exonuclease [Bordetella bronchiseptica RB50] Length = 247 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 10/168 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R +V D+ETTGL I+E AV + + R F + +GR P + Sbjct: 73 LRALDGPFVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGR-VPPFISR 131 Query: 62 LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GIT + +D F +F DF + HNA FD F+ A R Sbjct: 132 LTGITQAEVERDGVPVRQAFGDFLDFI--EGGPLFFHNASFDRRFLQAAADRTGLPF--E 187 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 ++ TL +AR+ P + LN L + G + H AL D Sbjct: 188 AQTHCTLMLARQAWPELPSHKLNVLARHLG---ASEPTHRALADVRTT 232 >gi|282852211|ref|ZP_06261563.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 224-1] gi|282556630|gb|EFB62240.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus gasseri 224-1] Length = 937 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 9/162 (5%) Query: 9 KIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG ++ D II+ G ++ K + + + P+ R+ L I++ Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGC-AIIKKRKVVKIYSFLINPH-REIPQAVENLTHISN 67 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + F+ + +N ++AHN FD+ F+N EL +PL + IDT+ Sbjct: 68 RDVAQARDFNYYAPKIRKIL--ENTIFVAHNVNFDLPFLNYELVNAGLEPL-TGKAIDTV 124 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 +A+ P+ L L R I H + H A D+ + + Sbjct: 125 ELAQIAFPTFPSYKLRDLTARLKIK--HLNPHRADSDALVTA 164 >gi|213970865|ref|ZP_03398988.1| ribonuclease T [Pseudomonas syringae pv. tomato T1] gi|213924388|gb|EEB57960.1| ribonuclease T [Pseudomonas syringae pv. tomato T1] Length = 203 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + + T+ + P G AL+ Sbjct: 10 PVVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFT 69 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 GI D L+ S + ++ + A + HNA FD+GF+NA + R+ Sbjct: 70 GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 129 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 130 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 187 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 188 IVNRWKEMG 196 >gi|311896766|dbj|BAJ29174.1| putative exonuclease [Kitasatospora setae KM-6054] Length = 233 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 9/164 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+E TG R++E+ V+L +T R F + P G +HGI Sbjct: 4 YAVVDVEATGRSPWRHRVVEVAVVQLDAGLRTEREFATLVDPGG---PVGPTHVHGIAQA 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F I + + + H+ D F+ E RI L ++ T+ Sbjct: 61 DVLGAPRFRQIAPRLLELLAGR--VLVGHHVTCDRAFLEREFARIGV-ALPQVPLLCTMR 117 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +ARR+ P L++ G+ H AL D+ ++ Sbjct: 118 LARRQLPEAGGYGLSACVDAAGLGW--FPAHTALGDARATVELL 159 >gi|167755995|ref|ZP_02428122.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402] gi|167703987|gb|EDS18566.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402] Length = 443 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 10/166 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ET + +N+ I IG + +D T + P ++L GIT E + Sbjct: 7 FVDVETP--NYQNNSISSIGVI-NVDGDGVVTTKYFLVDPEAH-FDRFNIELTGITPEMV 62 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 D+P+F ++SE +F N+ +AHNA FD+ I+A LQR + P+ P T I+ Sbjct: 63 ADQPNFKEVWSEIEPYF--TNSLVVAHNAVFDLSVISACLQRYDL-PIFPIFYTCTYRIS 119 Query: 131 RRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 R PS+ LN L Y +T+ + H AL DS +++ ++ Sbjct: 120 RALKIPSNSYKLNDLSSYYHVTLDNH--HNALADSKACMEIFYYLL 163 >gi|116515062|ref|YP_802691.1| ribonuclease T [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285542|sp|Q057V1|RNT_BUCCC RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|116256916|gb|ABJ90598.1| exoribonuclease T [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 221 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 20/196 (10%) Query: 5 NKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNS 56 N+ R +V DIE+ G + D ++EI V L + K + + P G Sbjct: 13 NRFRGFYPVVIDIESAGFQADTDALLEIAIVTLKMNKSGWLKIDDRLHFHIIPFKGSIIK 72 Query: 57 PEALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINA 108 E++ + I L+ S + + + +AHNA FD F+ A Sbjct: 73 AESVAFNKIDPFNPLRGAVSEKNALKNIFKLVRKKININKCRKGILVAHNANFDHNFLMA 132 Query: 109 ELQRINK--DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 +R+ +P P DT +++ + L CK GI H AL D+ Sbjct: 133 ASKRVGNLNNPFHPFTTFDTAALSGLIF--GQTVLAKACKLAGIPFDTNQAHSALYDTIQ 190 Query: 167 LSDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 TAYLFCELVNRWKRLG 206 >gi|83647672|ref|YP_436107.1| ribonuclease T [Hahella chejuensis KCTC 2396] gi|123531538|sp|Q2SCE2|RNT_HAHCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|83635715|gb|ABC31682.1| ribonuclease T [Hahella chejuensis KCTC 2396] Length = 218 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 18/206 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVE--LLDYSK--TNRTFQVFLCPN-GRKNSP 57 R +V D+ET G +SK D ++E+ AV + D + P G Sbjct: 15 RFRGFLPVVVDVETAGFNSKTDALLEVSAVIISMEDDGMLYPEPPVSFNVEPFAGANIEQ 74 Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109 AL+ GI L+D + +E + A + HNA FD F+ A Sbjct: 75 AALEFTGIDPFNPLRDAKPEADALNELFRPIRKSVKSNGCNRAILVGHNATFDHSFLFAA 134 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R + ++P P DT ++A + L+ C+ GI ++ H A D+ Sbjct: 135 AERGDVKRNPFHPFSTFDTATLAALAY--GHTVLSRACQLAGIPFDNKEAHSAEYDAMKT 192 Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFF 193 ++++ ++ ++ G+ T++ + Sbjct: 193 AELFCSIVNRWKELG-GWTTDQQDYA 217 >gi|168752095|ref|ZP_02777117.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113] gi|168758576|ref|ZP_02783583.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401] gi|168770825|ref|ZP_02795832.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486] gi|168783143|ref|ZP_02808150.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076] gi|168802378|ref|ZP_02827385.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508] gi|195939745|ref|ZP_03085127.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4024] gi|208810405|ref|ZP_03252281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206] gi|208816703|ref|ZP_03257823.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045] gi|208820052|ref|ZP_03260372.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042] gi|209398184|ref|YP_002270926.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115] gi|254793468|ref|YP_003078305.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14359] gi|188013988|gb|EDU52110.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113] gi|188999500|gb|EDU68486.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076] gi|189354630|gb|EDU73049.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401] gi|189360293|gb|EDU78712.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486] gi|189375616|gb|EDU94032.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508] gi|208724921|gb|EDZ74628.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206] gi|208731046|gb|EDZ79735.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045] gi|208740175|gb|EDZ87857.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042] gi|209159584|gb|ACI37017.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115] gi|209767642|gb|ACI82133.1| exonuclease X [Escherichia coli] gi|209767646|gb|ACI82135.1| exonuclease X [Escherichia coli] gi|254592868|gb|ACT72229.1| DNA exonuclease X [Escherichia coli O157:H7 str. TW14359] gi|326343773|gb|EGD67535.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1125] Length = 220 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVHPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|157161311|ref|YP_001458629.1| exodeoxyribonuclease X [Escherichia coli HS] gi|157066991|gb|ABV06246.1| exodeoxyribonuclease X [Escherichia coli HS] Length = 220 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|15802257|ref|NP_288281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 EDL933] gi|15831808|ref|NP_310581.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. Sakai] gi|168762363|ref|ZP_02787370.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501] gi|168788263|ref|ZP_02813270.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869] gi|217328801|ref|ZP_03444882.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588] gi|261227657|ref|ZP_05941938.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK2000] gi|261258177|ref|ZP_05950710.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK966] gi|12515897|gb|AAG56834.1|AE005407_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13362022|dbj|BAB35977.1| exonuclease X [Escherichia coli O157:H7 str. Sakai] gi|189367397|gb|EDU85813.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501] gi|189372044|gb|EDU90460.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869] gi|209767640|gb|ACI82132.1| exonuclease X [Escherichia coli] gi|217318148|gb|EEC26575.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588] gi|320188544|gb|EFW63206.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC1212] gi|326342223|gb|EGD66004.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1044] Length = 220 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVHPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|50084341|ref|YP_045851.1| ribonuclease T [Acinetobacter sp. ADP1] gi|49530317|emb|CAG68029.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter sp. ADP1] Length = 221 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 20/191 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +++ D ++EI + ++ + ++ + P G Sbjct: 18 RFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGANLDR 77 Query: 58 EALKLHGITD------EFLKDKPS-FSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107 +L GI +D+ S IF + +Q + HNA FD+GF+ Sbjct: 78 RSLDFIGIDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGFLQ 137 Query: 108 AELQRI---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R N++P + DT++++ + L C + GI + H AL D+ Sbjct: 138 AAIARTSTKNQNPFHSFSVFDTVTLSAVMF--GQTVLAKACIQAGIDFDGKEAHSALYDT 195 Query: 165 HLLSDVYIKMM 175 ++++ ++ Sbjct: 196 QKTAELFCYIL 206 >gi|115452527|ref|NP_001049864.1| Os03g0301400 [Oryza sativa Japonica Group] gi|108707691|gb|ABF95486.1| exonuclease family protein, expressed [Oryza sativa Japonica Group] gi|113548335|dbj|BAF11778.1| Os03g0301400 [Oryza sativa Japonica Group] gi|215678888|dbj|BAG95325.1| unnamed protein product [Oryza sativa Japonica Group] Length = 313 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 22/207 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + +RIIE +L+ N T Q + P + +HGI+ Sbjct: 113 ILVFDIETTGFSRRYERIIEFAVRDLMGGK--NSTIQTLINPEREI---KNAYVHGISSS 167 Query: 69 FL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP 120 + D P F + ++ W+AHN + FDV F+ E QR + Sbjct: 168 MVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGD 227 Query: 121 SRIIDTLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DTL IAR+ S L++L + Y I ++ S H A+ D L V K+ Sbjct: 228 WLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAG-SAHRAMQDVITLCYVLQKLT 286 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPN 202 ++ +R F+ ++P Sbjct: 287 F---ELKLTVPQLLERSFRVSDLSIPR 310 >gi|283785581|ref|YP_003365446.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168] gi|282949035|emb|CBG88638.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168] Length = 220 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVVDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I ++ + ++AHNA FD + P P I T+ ++ Sbjct: 59 ADKPWIEDIIPH---YYGSE--WYVAHNASFDSRVL----------PEMPGEWICTMKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLNVQTPAGLHHHRALYDCYITAALLIDIM 151 >gi|119504386|ref|ZP_01626466.1| ribonuclease T [marine gamma proteobacterium HTCC2080] gi|119459894|gb|EAW40989.1| ribonuclease T [marine gamma proteobacterium HTCC2080] Length = 216 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 18/202 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGA--VELLDYSKT--NRTFQVFLCP-NGRKNSP 57 R ++ D+ET G ++ D ++E+ A + + D + T + P G Sbjct: 12 RFRGFLPVIVDVETGGFNAATDALLEVAATLIHVDDRGEVVLGDTISFNVEPFEGANIEA 71 Query: 58 EALKLHGITDE-----FLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 AL+ GI E L + + +F+ + + HNA FD GFIN+ Sbjct: 72 SALEFTGIDPENPLRAALPEAIALGDLFTRIRKEVRDTGCNRAILVGHNAHFDAGFINSA 131 Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 R ++P P DT ++A L C+R GI ++ H A D+ Sbjct: 132 SLRCDIKRNPFHPFSHFDTATLAGLAF--GHTVLAQACRRAGIEFNNSEAHSAAYDATKT 189 Query: 168 SDVYIKMMVGGSQINFGFKTNE 189 ++++ +V Q G++ E Sbjct: 190 AELFC-CIVNQWQRLGGWQWPE 210 >gi|227892520|ref|ZP_04010325.1| possible DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ultunensis DSM 16047] gi|227865641|gb|EEJ73062.1| possible DNA-directed DNA polymerase III epsilon subunit [Lactobacillus ultunensis DSM 16047] Length = 370 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 9/178 (5%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K V D+ETTG + II+ G ++ K +T+ + P+ R+ + L G Sbjct: 7 KDTFAVVDLETTGTQRENGHHIIQFGC-AIIKNLKVVKTYSFMINPH-REIPQSVVNLTG 64 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I +E + + F + QNA ++AHN FD+ F+N EL + D L ++ I Sbjct: 65 IHNEDVAKEKDFKFYAPKIVKIL--QNAVFVAHNVDFDLPFLNYELTQHGYDAL-TNKAI 121 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 DT+ +A+ P+ L+ L + I H + H A D++ + + IK++ ++ Sbjct: 122 DTVELAKIAFPTLPSYKLSDLTSQLEIK--HLNPHKADSDAYGTAILLIKIIKQLEKL 177 >gi|294790489|ref|ZP_06755647.1| DNA polymerase III domain protein [Scardovia inopinata F0304] gi|294458386|gb|EFG26739.1| DNA polymerase III domain protein [Scardovia inopinata F0304] Length = 241 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+FD ETTG + + RIIEIG + L +Q + P G + + L GI D Sbjct: 44 IIFDTETTG-NFSDQRIIEIGGLFLRKGVPIGE-WQQLINP-GVNITHFSQHLSGINDAM 100 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + ++P S++ F + QN + +N FD+ +N E R+ + S +ID + I Sbjct: 101 IANEPPASTVIPWFINSI--QNLTIVGYNVNFDINALNEEANRLGMSGISVSNVIDVIDI 158 Query: 130 ARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 AR+ P S L + + S KH AL D+ L + KM Sbjct: 159 ARQSLPNSPSYSLEQVAILLNV--SDTEKHRALDDAILTWKCWQKM 202 >gi|297568933|ref|YP_003690277.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus AHT2] gi|296924848|gb|ADH85658.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus AHT2] Length = 238 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 21/201 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD E TGL+ + D I+ IGAV++ + TF V++ P+ R ++ +H IT Sbjct: 40 FVVFDTELTGLNRQRDEIVSIGAVKIRNLQILVGETFHVYIKPS-RALPKDSTLIHRITP 98 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + ++ P +++ +F F + A + H DV F+N +R + + +DT+ Sbjct: 99 QQIEQAPQLATVLPDFISFCGQ--ALLVGHYVGLDVAFLNRACRRH-YGAVVSNPCLDTM 155 Query: 128 --------SIARRKHPSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++ H R L L + Y + + H A D+ + +++ ++ Sbjct: 156 RLAQTYTEMQWQQYHDRFRMDATYSLAGLSQEYNLP--DFTLHDAYEDALQTAYLFVFLI 213 Query: 176 VGGSQINFGFKTNEDRFFKEE 196 G T +D F + Sbjct: 214 KKMR--AKGIVTLKDIFSAGQ 232 >gi|300811276|ref|ZP_07091776.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497736|gb|EFK32758.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 290 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 13/169 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGL++++D+I+ IGAV+ F + + ++L GIT Sbjct: 126 FVAVDIETTGLNTESDQILSIGAVKHD-----GTEFYRLIK-QDIDVPKQIVELTGITPA 179 Query: 69 FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L KD + E DF + + +N +FD F+N E ++ L + I D L Sbjct: 180 MLDKDGVPLQDVLGELTDFVG--DVPIVGYNFRFDSAFLNREYRKCGMQEL-KNEIKDLL 236 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +RK L ++ YGI ++ H A+ D+ ++ +K++ Sbjct: 237 PVVKRKEKFLDNYKLQTVLSNYGIE--NKVPHNAVSDARATKELAMKLI 283 >gi|301645642|ref|ZP_07245570.1| exonuclease [Escherichia coli MS 146-1] gi|301076071|gb|EFK90877.1| exonuclease [Escherichia coli MS 146-1] Length = 220 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNVALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|239831040|ref|ZP_04679369.1| exonuclease [Ochrobactrum intermedium LMG 3301] gi|239823307|gb|EEQ94875.1| exonuclease [Ochrobactrum intermedium LMG 3301] Length = 214 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 9/214 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + K R IV D ETTGL DRI+ IGAV++ +++ + + + P+A Sbjct: 9 VHTRKKRVIVVDTETTGLLP-YDRIVTIGAVKIEGDDFLHQSLH-LIFDPRKDSHPQAEA 66 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HG + + + FS + + +F+ + E +AHNA FD+ ++ E ++ D L P Sbjct: 67 VHGYDNWMTRYQDLFSDLAAPIRKWFDWAD-EIVAHNADFDMRYVQREFRKAEVDML-PH 124 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 + T+ +R L+ R G++ + +HGAL D++L + +Y+ I Sbjct: 125 PVFCTMERSREIWSGQSAKLDDCLARIGLSRIGK-RHGALEDAYLTAGLYLH----QRGI 179 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTR 215 + K P + + R Sbjct: 180 KKSLPKVNSWSPPKNLKPYPPRPEGELPRRAPKR 213 >gi|307823995|ref|ZP_07654222.1| ribonuclease T [Methylobacter tundripaludum SV96] gi|307734779|gb|EFO05629.1| ribonuclease T [Methylobacter tundripaludum SV96] Length = 207 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 17/194 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSP 57 R +V DIET G + K + ++EI AV + S + + + P + Sbjct: 11 RFRGFLPVVVDIETAGFNPKKNALLEIAAVIVELNSNSDLEITERYTTHVIPFKNAELDE 70 Query: 58 EALKLHGITDEF-----LKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 ALK +GI +++K + +F + N + HN FD+GF+NA Sbjct: 71 AALKFNGIDPHHPFRMAIEEKDALHMLFKPIKEAVKRNNCTRAILVGHNPAFDIGFLNAA 130 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +QR I + P P DT ++ + + L + + G+ + H AL D+ Sbjct: 131 IQRTQIKRSPFHPFSTFDTATLGGLVY--QQTVLAKIAQTAGLDWDNEKAHSALYDAEKT 188 Query: 168 SDVYIKMMVGGSQI 181 ++++ ++ Q+ Sbjct: 189 AELFCMIVNRWKQL 202 >gi|147677749|ref|YP_001211964.1| hypothetical protein PTH_1414 [Pelotomaculum thermopropionicum SI] gi|146273846|dbj|BAF59595.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 937 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 36/229 (15%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI++ +V D+ETTGLD +DRIIEIG V L D K + + P GR + Sbjct: 1 MIKE----IVVCDLETTGLDPLSDRIIEIGLVRLKD-LKIVDIYHTMVNP-GRPLPLKIK 54 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L G+ D L P+FS + + F +A HN +FD+GF+ A Sbjct: 55 NLTGLDDSDLASAPAFSGVREKVLGFIG--DAPIAGHNIRFDMGFLAAA-----GGISFK 107 Query: 121 SRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSK-------------------HGA 160 + DT+ +AR P L SLC+R + + R + H Sbjct: 108 NPAYDTVELARLAVPGLPTYRLESLCERLNVEAAARHRALDDALAAAGLLIKLIHKLHD- 166 Query: 161 LLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKE-EKKTVPNISLLKR 208 +D +L+ + + S+ F + K+ + +P KR Sbjct: 167 -IDIEVLAQLNALLTEARSEWQFITTSLLKSIIKKFPDRKIPESPYWKR 214 >gi|217033856|ref|ZP_03439281.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10] gi|216943754|gb|EEC23197.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10] Length = 287 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 56/217 (25%), Positives = 86/217 (39%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G I H A D+ ++ ++ I+ Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + ++T P SL +R K L I Sbjct: 247 FSKCANTLIKRPPRARYQETPPPFSLFERTKGLLNII 283 >gi|218548595|ref|YP_002382386.1| exodeoxyribonuclease X [Escherichia fergusonii ATCC 35469] gi|218356136|emb|CAQ88753.1| DNA exonuclease X [Escherichia fergusonii ATCC 35469] gi|324113580|gb|EGC07555.1| exonuclease [Escherichia fergusonii B253] gi|325497013|gb|EGC94872.1| exodeoxyribonuclease X [Escherichia fergusonii ECD227] Length = 220 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D TN + P+ R +P+A+ +H IT+ + Sbjct: 4 VIDTETCGLQGG---IVEIASVDVVDGKITNPMSH-LVRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ ++ Sbjct: 59 ADKPWIEEVIPHYY-----GSDWYVAHNASFDRRVL----------PEMPGEWICTMKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 R P + +L K + + H AL D ++ + + I +M Sbjct: 104 RHLWPGIKYSNMALYKSRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|325912570|ref|ZP_08174953.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] gi|325477991|gb|EGC81120.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] Length = 241 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K +DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 69 QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+ P+ L + I H + H A D+ + + + +K++ Sbjct: 126 ELAQIAFPTIPSYKLQDITSTLHIK--HANPHRADSDALVTAKMLLKII 172 >gi|262375958|ref|ZP_06069189.1| ribonuclease T [Acinetobacter lwoffii SH145] gi|262309052|gb|EEY90184.1| ribonuclease T [Acinetobacter lwoffii SH145] Length = 219 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 20/196 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +++ D ++EI A+ ++ + + + + P G Sbjct: 16 RFRGFLPVVVDVETAGFNAQTDALLEIAAIPIVYNEEGQFVPGQAYHAHINPFEGANLDR 75 Query: 58 EALKLHGITD------EFLKD-KPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107 +L+ GI +D K + IF + +QN + HNA FD+GF+ Sbjct: 76 RSLEFIGIDPSNPMRIAMAEDEKTALKRIFKSVNEVRRQQNCTHAVLVGHNAHFDLGFLQ 135 Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R ++P + DT++++ + L C + GI + H AL D+ Sbjct: 136 AAIARTGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLAKSCIQAGIEFDGKEAHSALYDT 193 Query: 165 HLLSDVYIKMMVGGSQ 180 ++++ ++ + Sbjct: 194 QKTAELFCYILNKLAP 209 >gi|323961899|gb|EGB57498.1| exonuclease [Escherichia coli H489] Length = 220 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNIALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|313144535|ref|ZP_07806728.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818] gi|313129566|gb|EFR47183.1| DNA polymerase III [Helicobacter cinaedi CCUG 18818] Length = 254 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 8/168 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + + DIET G ++ IIEIGA+ + + S+ +F+ ++ +L Sbjct: 68 WQEGEFVFVDIETNGAKPQSSEIIEIGALRVKN-SQILESFESYVYAPF--VPENITELT 124 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI E +++ P + F +F ++AHN FD F++ L++ L + Sbjct: 125 GIRQEDIQNAPQSKEVLRAFREFLG--GGVFVAHNVNFDFSFLDYHLRQNGLFGLL-NPK 181 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + T+ +A++ S R L+ L + GI + H A D+ ++ Sbjct: 182 LCTIDLAKKTILSKRYALSYLNEFLGINTAM--SHRAYADALTSFRIF 227 >gi|26108511|gb|AAN80713.1|AE016761_288 Exodeoxyribonuclease X [Escherichia coli CFT073] Length = 238 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 22 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 76 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 77 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 121 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 122 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 169 >gi|309805626|ref|ZP_07699668.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] gi|308165064|gb|EFO67305.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] Length = 225 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 9/170 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K +DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 69 QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +A+ P+ L + I H + H A D+ + + + +K++ Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKIIE 173 >gi|29374711|ref|NP_813863.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583] gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22] gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583] gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22] gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecalis TX0309B] gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecalis TX0309A] Length = 289 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 16/170 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FDIETTGLD D +I+I A +D + + F + + E KL GIT++ Sbjct: 8 FIAFDIETTGLDFHQDAVIQISAARYVDGIEVD-YFDTLVNSDY--IPDEITKLTGITND 64 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + P+ + +D+ + + HN FD F+ A+ + + I DT Sbjct: 65 QVLNAPTLDEVMPYLFDYLG--DTILVGHNIKSFDFPFLKAK----GYNIAEGHEIYDTR 118 Query: 128 SIAR-RKHPSSRNDLNSLCKRYGIT-ISHRSKHGALLDSHLLSDVYIKMM 175 A RKH + N L +L +GI IS H AL D + + V+++++ Sbjct: 119 YFAATRKHGAVNNQLTTLKLLFGIDAIS----HNALNDVRISAIVFMELL 164 >gi|330811344|ref|YP_004355806.1| ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379452|gb|AEA70802.1| Ribonuclease T [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 225 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI A ++ + + T+ + P G AL+ Sbjct: 32 PVVVDVETGGFNSATDALLEIAATTIGMDEKGFVFPDHTYFFRVEPFEGANVEAAALEFT 91 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 GI D L+ S + ++ + A + HN+ FD+GF+NA + R + Sbjct: 92 GIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDM 151 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ I R H A D+ ++++ Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAADIDFDGREAHSARYDTEKTAELFCG 209 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 210 IVNRWKEMG 218 >gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25] gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25] gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni S3] gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 326 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 48/216 (22%), Positives = 82/216 (37%), Gaps = 17/216 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D+ETTG D K + I+EI A+ + K F + + GI ++ Sbjct: 34 YVVIDLETTGFDPKCNEILEIVALRYENNEKIAE-FSKLIK--VSFLPSFITEFTGINED 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +K+ S EF DF + +AHNA FD+ F+ P +DT+ Sbjct: 91 MIKNCNDISQTLKEFDDFLKSGD-ILVAHNAHFDINFLYDNFMCYLNKPFS-FDFVDTMR 148 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK---------MMVGG 178 +++ + + + L LC +Y I + H D L ++ ++ Sbjct: 149 LSKLINQELAHHRLKDLCNQYNICYEN--AHRGEKDCELTHLCLMELKKTAFDNSLIEND 206 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFT 214 +N G KT + + K I PL+ Sbjct: 207 VLVNNGLKTQIRQTQTKAKDIQAKIQEFDISHPLYN 242 >gi|261856008|ref|YP_003263291.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus c2] gi|261836477|gb|ACX96244.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus c2] Length = 481 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 9/164 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 DIETTG ++ DRI EIG V L T + + P G L GIT Sbjct: 19 QPLACLDIETTGSHTERDRITEIGIVTLHPDG-TQSNWSCLIHP-GCAIPARITTLTGIT 76 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + D+P F+ + +N IAHNA+FD+GF+ +R ++ + Sbjct: 77 NEMVADQPVFAHRAQALLERL--ENHIVIAHNARFDLGFLKQAFRREGIRF--NPSVLCS 132 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 + ++R+ P R++L+S+ +R G++ + ++H AL D+ +++D Sbjct: 133 VKLSRQMFPAERRHNLDSVMQRMGLSCA--ARHRALGDAAVVAD 174 >gi|149374321|ref|ZP_01892095.1| ribonuclease T [Marinobacter algicola DG893] gi|149361024|gb|EDM49474.1| ribonuclease T [Marinobacter algicola DG893] Length = 211 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G + + D ++EI AV + + K T + P G Sbjct: 4 RFRGFLPVVVDVETGGFNPEKDALLEIAAVILTMDDDGWLKRAETHVQQIDPFEGANLEQ 63 Query: 58 EALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 AL GI E + ++ S IF + + HNA FD F+ A Sbjct: 64 SALDFTGIDPWNPEREAVPEREGMSEIFGPIRKAVKAHDCKRAVLVGHNATFDHNFVFAA 123 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 R I ++P P DT ++A + L CK GI S++ H A D+ Sbjct: 124 ALRSDIRRNPFHPFSTFDTATLAGLAY--GHTVLAQACKLAGIPFSNKDAHSAAYDAEKT 181 Query: 168 SDVYIKMMVGGSQIN 182 +D++ ++ +I Sbjct: 182 ADLFCGIVNRWREIG 196 >gi|259501466|ref|ZP_05744368.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners DSM 13335] gi|302191565|ref|ZP_07267819.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus iners AB-1] gi|309803902|ref|ZP_07697986.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 11V1-d] gi|309804516|ref|ZP_07698582.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] gi|309806946|ref|ZP_07700929.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] gi|309808365|ref|ZP_07702268.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] gi|309809203|ref|ZP_07703075.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] gi|325912750|ref|ZP_08175130.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] gi|329919994|ref|ZP_08276872.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 1401G] gi|259167134|gb|EEW51629.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners DSM 13335] gi|308163997|gb|EFO66260.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 11V1-d] gi|308166169|gb|EFO68386.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 09V1-c] gi|308166670|gb|EFO68866.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 03V1-b] gi|308168428|gb|EFO70543.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LactinV 01V1-a] gi|308170503|gb|EFO72524.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] gi|325477964|gb|EGC81096.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 60-B] gi|328936765|gb|EGG33205.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 1401G] Length = 177 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 9/168 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M D ET + D + V + D + +F + P +K+HGIT Sbjct: 1 MNFTAMDFETA--NRHYDSACSLALVLVRDNKIID-SFYTVINPQ-MPFDKNNIKIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KD P+ ++ + + +AHNA+FD + L++ N IDT Sbjct: 57 ANDVKDAPTMDEVWPKIR-LLFQPGMLVVAHNARFDCNVMKKSLKKYNIAE-PHYLTIDT 114 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L+ +R P+ +N L+++ + I + H H AL DS +++ IK Sbjct: 115 LATSRALMPNLKNYRLDTVSNQLNIDLWHH--HNALSDSEACAEILIK 160 >gi|222624763|gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group] Length = 901 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 22/207 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + +RIIE +L+ N T Q + P + +HGI+ Sbjct: 701 ILVFDIETTGFSRRYERIIEFAVRDLMGGK--NSTIQTLINPEREI---KNAYVHGISSS 755 Query: 69 FL--KDKPSFSSIFSEFWDFF-----NEQNAEWIAHNAK-FDVGFINAELQRINKDPLDP 120 + D P F + ++ W+AHN + FDV F+ E QR + Sbjct: 756 MVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGD 815 Query: 121 SRIIDTLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DTL IAR+ S L++L + Y I ++ S H A+ D L V K+ Sbjct: 816 WLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAG-SAHRAMQDVITLCYVLQKLT 874 Query: 176 VGGSQINFGFKTNEDRFFKEEKKTVPN 202 ++ +R F+ ++P Sbjct: 875 F---ELKLTVPQLLERSFRVSDLSIPR 898 >gi|157414745|ref|YP_001482001.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81116] gi|157385709|gb|ABV52024.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 81116] gi|307747384|gb|ADN90654.1| DNA polymerase III, epsilon subunit [Campylobacter jejuni subsp. jejuni M1] gi|315931109|gb|EFV10083.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 253 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 7/147 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE+TG SK I+EIGAV++ + + R FQ F+ ++ +L GIT E Sbjct: 72 FCIVDIESTGGVSKG-EILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYE 127 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ PS + + S+F F +++ ++AHN +FD FI+ L L +R I T+ Sbjct: 128 MVENAPSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 184 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155 A+ S + L L + G+ +H Sbjct: 185 FAQCCIESPKYKLEVLKEFLGVENTHH 211 >gi|78186872|ref|YP_374915.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273] gi|78166774|gb|ABB23872.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273] Length = 236 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 16/186 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +VFD ETTG D K D +I IGAV + S +F+V + R EA+ +HG+ Sbjct: 48 RMVVFDTETTGFDLKTDGVISIGAVAINGLSINVADSFEVLVR-QDRVGRSEAVAVHGLL 106 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + F ++ + +A +A FDV +N L + L ++DT Sbjct: 107 KKDIAGGAGEVEAAEAFLEYIGS--SILVAQHASFDVAMLNRILSETFRIRLFNG-VVDT 163 Query: 127 LSIARRK---------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S+A+R H + L+ LC+RYGI + R H A D+ L + + +++ Sbjct: 164 ASLAKRLEKGPYYNLAHKAGEYRLDHLCQRYGIRLYDR--HTAAGDAFLTAQLLQRLLSK 221 Query: 178 GSQINF 183 G Sbjct: 222 GRSAGI 227 >gi|330981566|gb|EGH79669.1| ribonuclease T [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 193 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 17/187 (9%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLHGI 65 V D+ET G +S D ++EI AV + K T+ + P G AL+ GI Sbjct: 2 VVDVETGGFNSATDALLEIAAVTIGMDEKGFVFPEHTYFFRVEPFEGANIEAAALEFTGI 61 Query: 66 -TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI--NK 115 D L+ S + ++ + A + HNA FD+GF+NA + R+ + Sbjct: 62 KLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDMKR 121 Query: 116 DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +P P DT ++A + + L C+ GI R H A D+ ++++ ++ Sbjct: 122 NPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCGIV 179 Query: 176 VGGSQIN 182 ++ Sbjct: 180 NRWKEMG 186 >gi|323174733|gb|EFZ60349.1| exonuclease family protein [Escherichia coli LT-68] Length = 220 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L + + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYRTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|322384417|ref|ZP_08058103.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150775|gb|EFX44235.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 204 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 13/202 (6%) Query: 7 MRKI--VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 MR+I VFD+ETTGLD D+I EI A+ + R +G K +PE + L G Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEIAAIRTDLIREYGRLDVRITKNSGTKLTPEIINLTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + ++ F + + +AH+A FD+ F+ L ++PS + Sbjct: 61 INESMMRGGIPEELAIPLLACFMS--GSIVVAHHAPFDLSFLARYL-------VEPSSFV 111 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 T +++ P L ++ +R GI ++ H A+ D ++ ++ + Sbjct: 112 CTRVLSKLVEPGESASLAAVAERRGIELTGH--HRAMADVEATVKIFQQLKAEADALGIR 169 Query: 185 FKTNEDRFFKEEKKTVPNISLL 206 + K +P ++ + Sbjct: 170 YYNVLINDEKRPLTYIPKLAKV 191 >gi|71066188|ref|YP_264915.1| ribonuclease T [Psychrobacter arcticus 273-4] gi|71039173|gb|AAZ19481.1| RNAse T [Psychrobacter arcticus 273-4] Length = 239 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 82/218 (37%), Gaps = 23/218 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NG 52 M K + R +V D+ET G +++ D ++EI + +L + + P G Sbjct: 24 MKLKERFRKFLPVVVDVETAGFNAQTDALLEIACIPVLMNEQGVFYPGEALNAHIEPFEG 83 Query: 53 RKNSPEALKLHGIT-DEFLKDKPSFSS--IFSEFWDFFNE-------QNAEWIAHNAKFD 102 P AL GI + L+ + + E + I HNA FD Sbjct: 84 ANLEPSALAFTGIDPNNPLRKAIAEDEKTALRRIFKGLKEVRRNEDCRQCVLIGHNAHFD 143 Query: 103 VGFINAELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 + F+NA + R N +P + DT++++ + L CK G+ H Sbjct: 144 LAFLNAAVLRTNNKSHNPFHNFSVFDTVTLSALAF--GQTVLARACKAAGLDFDGNDAHS 201 Query: 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEK 197 AL D+ ++++ ++ + + + K Sbjct: 202 ALYDTQKTAELFCYILNNYPMLANAMHSEPETAADNNK 239 >gi|167470221|ref|ZP_02334925.1| DNA polymerase III, epsilon subunit [Yersinia pestis FV-1] Length = 143 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 54/140 (38%), Positives = 77/140 (55%), Gaps = 11/140 (7%) Query: 8 RKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 R+I+ D ETTG++ + RIIEIG V +++ T R F V++ P R PEA + Sbjct: 7 RQILLDTETTGMNKLGVHYEGHRIIEIGTVAVINLPLTGRNFHVYVKP-ARLVDPEAYGV 65 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP-- 120 HGI+DEFL DKP+F+ I EF DF + E + HNA FD+GF + E + + +D Sbjct: 66 HGISDEFLADKPTFADITPEFLDFI--RGGELVIHNAAFDIGFKDYEFRMLQQDIPKTET 123 Query: 121 -SRIIDTLSIARRKHPSSRN 139 I D + R P R+ Sbjct: 124 LCPISDNKEMPPRLFPGKRH 143 >gi|332705935|ref|ZP_08426009.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L] gi|332355339|gb|EGJ34805.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L] Length = 818 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 8/166 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 VFD+ETTG D ++EI A+ L+D K R F ++ + E+ ++HG +D FL Sbjct: 465 VFDVETTGFSVSQDEVVEIAAIRLVDGKKQAR-FHAYI--TNTVSVGESERIHGHSDRFL 521 Query: 71 KDKPS-FSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + +F EF++F ++ + HN FD+ + A+ Q+ + DTL + Sbjct: 522 AENGRNAKHVFGEFFEFVG--DSLLVGHNVGFDIKMVTAQAQKAGVSYPKKLQWEDTLEL 579 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 A R S R L L + ++H H A+ D D+ ++ Sbjct: 580 ANRFIESERYSLEVLAEHLN--LTHLPSHKAMDDVETTIDLLALLI 623 >gi|309809881|ref|ZP_07703731.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] gi|308169833|gb|EFO71876.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners SPIN 2503V10-D] Length = 233 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 9/170 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K +DRII+ G + D T +T+ + P + L GI++ Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKDRKIT-KTYSFLINPE-KTIPRAVENLTGISN 68 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + +FS + + +N ++AHN FD+ F+N EL P + IDT+ Sbjct: 69 QEASKAQTFSFYAKKIQEIL--ENTIFVAHNINFDLPFLNYELINAGLSPFA-GKAIDTV 125 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +A+ P+ L + I H + H A D+ + + + +K++ Sbjct: 126 ELAQIAFPTIPSYKLQDITNTLHIK--HANPHRADSDALVTAKMLLKIIE 173 >gi|188579669|ref|YP_001923114.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] gi|179343167|gb|ACB78579.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] Length = 297 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 10/212 (4%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + + D +G + ++ + R + P + SP +++HGI Sbjct: 1 MSVVAIDFETA--NERRDSACAVG-LAWIEGGRVVRRETRLIRPPQMRFSPGNIRIHGIL 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++D P+F +F+EF + A +AHNA FD+G + A L +P+ T Sbjct: 58 PADVRDAPTFPEVFAEFRP--DLTGALLLAHNAGFDMGVLAASLAAWG-EPVPDMAGHCT 114 Query: 127 LSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L IARR P + L + R GI H H A D+ +++ + + + Sbjct: 115 LQIARRIFPDPAGHGLAKVAGRLGIRFEH---HDAGEDAFACAEIALAALRETGAADIAD 171 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDKPLFTRIT 217 P + R + Sbjct: 172 LARGLGLMPIRAVAGPRRDFTRSTSAHALRAS 203 >gi|288932698|ref|YP_003436758.1| DNA polymerase III subunit epsilon [Ferroglobus placidus DSM 10642] gi|288894946|gb|ADC66483.1| DNA polymerase III, epsilon subunit [Ferroglobus placidus DSM 10642] Length = 200 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 89/198 (44%), Gaps = 18/198 (9%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT--NRTFQVFLCPNGRKNSPEALKLHGI 65 + V D+ETTGL+ K D II I + +D K + + L P K ++K HGI Sbjct: 5 KFAVVDVETTGLNVKKDEIISIAII-PMDGLKILFSEAYYRILKPRRFKID--SVKYHGI 61 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T +++ P+F + E + NE+ + ++ D+ F+ + + + + +D Sbjct: 62 TPRMVEEAPTFCEVKEEILEKLNER--IIVGYSINLDIEFLKKSFKEC--EVVFECKYVD 117 Query: 126 TLSIARRKHP-----SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 + + L L K+YG+ +++R H AL D+++ + ++ M Sbjct: 118 IADVEKLVGRLFGDYMKDVTLEDLAKKYGVDVAYR--HSALSDAYITAQIFQ--MQLLRL 173 Query: 181 INFGFKTNEDRFFKEEKK 198 + +G + ED +K+ Sbjct: 174 LKYGLRKFEDVLRAIKKE 191 >gi|312871342|ref|ZP_07731439.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 3008A-a] gi|312875261|ref|ZP_07735270.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2053A-b] gi|311089224|gb|EFQ47659.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2053A-b] gi|311093135|gb|EFQ51482.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 3008A-a] Length = 177 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 9/168 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M D ET + D + V + D + +F + P +K+HGIT Sbjct: 1 MNFTAMDFETA--NRHYDSACSLALVLVRDNKIID-SFYTVINPQ-MPFDKNNIKIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KD P+ + ++ + + +AHNA+FD + L++ N IDT Sbjct: 57 ANDVKDAPTMNEVWPKIR-LLFQPGMLVVAHNARFDCNVMKKSLKKYNIAE-PHYLTIDT 114 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L+ +R P+ +N L+++ + I + H H AL DS +++ IK Sbjct: 115 LATSRALMPNLKNYRLDTVSNQLNIDLWHH--HNALSDSEACAEILIK 160 >gi|311694106|gb|ADP96979.1| ribonuclease T [marine bacterium HP15] Length = 208 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVE-LLDYSKTNRTFQVF---LCP-NGRKNSP 57 R +V D+ET G + + D ++E+ AV +D R + + P G Sbjct: 4 RFRGFLPVVVDVETAGFNPERDALLEVAAVILTMDDDGWVRRAETHVQQIDPFEGANLEQ 63 Query: 58 EALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 AL GI E + ++ S IFS + + HNA FD FI A Sbjct: 64 SALDFTGIDPWNPEREAVPEREGLSEIFSPIRKAVKNHDCKRAVLVGHNATFDHNFIFAA 123 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 R I ++P P DT ++A + L CK GI S++ H A D+ Sbjct: 124 ALRADIRRNPFHPFSTFDTATLAGLAY--GHTVLAQACKLAGIPFSNKEAHSAAYDAEKT 181 Query: 168 SDVYIKMMVGGSQIN 182 +D++ ++ ++ Sbjct: 182 ADLFCGIVNRWKELG 196 >gi|323439142|gb|EGA96870.1| DNA polymerase III alpha chain [Staphylococcus aureus O11] gi|323441573|gb|EGA99223.1| DNA polymerase III alpha chain [Staphylococcus aureus O46] Length = 157 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 9/161 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V+++D T TF + P S + +K+HGI E Sbjct: 6 FVALDFETA--NGKRTSICSVGMVKVIDSQIT-ETFHTLVNPQDY-FSQQNIKVHGIQPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P+F +F F + +AHNA FD+ ++ +Q I P + Sbjct: 62 DVENAPTFDYVFPYMMQFIA--DLPVVAHNAAFDMNVLHQSIQNIGL-PTPNLTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 +A+R S R L + + Y + H AL D+ + Sbjct: 119 LAKRTVDSYRYGLKHMMEFYQLDF--HGHHDALNDAKACAM 157 >gi|311279254|ref|YP_003941485.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae SCF1] gi|308748449|gb|ADO48201.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae SCF1] Length = 219 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET L ++EI +V+++D TN + P+ R SP+A+ +H IT+E + Sbjct: 4 VIDTETCDLQGG---VVEIASVDIVDGKITNPMSH-LIRPD-RPISPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + +A ++AHNA FD + P I T+ +A Sbjct: 59 ADKPWIEEVVP-----LYQGSAWYVAHNASFDRRVL----------PEMNGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K +++ H AL D ++ + + I ++ Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVATPPGLHHHRALYDCYITAALLIDII 151 >gi|170720300|ref|YP_001747988.1| ribonuclease T [Pseudomonas putida W619] gi|169758303|gb|ACA71619.1| ribonuclease T [Pseudomonas putida W619] Length = 224 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + K T+ + P G AL+ Sbjct: 31 PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFYRVEPFEGANIEAAALEFT 90 Query: 64 GI-TDEFLKDKPSFS----SIFSEFWDFF---NEQNAEWIAHNAKFDVGFINAELQR--I 113 GI D L+ S IF + A + HN+ FD+GF+NA + R + Sbjct: 91 GIKLDHPLRMAVSEENALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVTRNDL 150 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ I R H A D+ ++++ Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCG 208 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 209 IVNRWKEMG 217 >gi|194333861|ref|YP_002015721.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM 271] gi|194311679|gb|ACF46074.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM 271] Length = 232 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 91/186 (48%), Gaps = 16/186 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGIT 66 R +VFD ETTG D D +I IGAV +++ S + +F+V + + R +A+ +HG+ Sbjct: 44 RYVVFDTETTGFDLSRDNVISIGAVAVMNGSIDISDSFEVLIRCD-RVGDGDAVSVHGLL 102 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 L + F ++ ++ +A +A FD+ +NA ++R L + ++DT Sbjct: 103 RRDLVGGCNEREALDGFLNYIG--DSILVAQHAGFDIAMMNAIMRRHYHMELL-NDVLDT 159 Query: 127 LSIARRK---------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 S+A+R H S L+SL +RY I + R H + D+ L + ++ +++ Sbjct: 160 ASLAKRLEKGPYYNLAHKSGEYRLDSLLERYHIRLYDR--HTSAGDAFLTAQLFQRLLYS 217 Query: 178 GSQINF 183 + Sbjct: 218 AASAGI 223 >gi|306835084|ref|ZP_07468126.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC 49726] gi|304569032|gb|EFM44555.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC 49726] Length = 231 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 7/148 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D ETTG++ + DRIIE+ AV + ++ L P+G+ + +HGIT++ Sbjct: 31 FAVIDTETTGVNKRYDRIIELAAVRADAHFNPVDSWHTLLSPDGKAI--KNSHIHGITND 88 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRI---NKDPLDPSRIID 125 + P+FS ++ +F + + + +AHNA FD I AE+ R+ + ID Sbjct: 89 MVATAPTFSDVYGDFTSYID--GMQLLAHNAPFDSKMIIAEVDRMTGVGDSEDEYFPFID 146 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITIS 153 T+ +A++ +L +L R G+ Sbjct: 147 TIDLAKQMLDHGPYNLPALLDRLGLNNP 174 >gi|225849248|ref|YP_002729412.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense Az-Fu1] gi|225643190|gb|ACN98240.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium azorense Az-Fu1] Length = 204 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 9/174 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + +VFD ETTGL+ K D I+ IGAV++ + N F + P R+ + E +K+HG Sbjct: 31 EDEYVVFDTETTGLNPKTDDILSIGAVKIKQNRILLNDRFYTVVKPE-REINEETIKIHG 89 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + L++ +F F + + + FDV IN ++I PL P++ I Sbjct: 90 LRKKDLENGIPIEKAIKDFLRFIGSR--PLVGYYIDFDVAMINKYTKKIIGIPL-PNKKI 146 Query: 125 DTLSIARRK----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + + P DL G+ I KH AL D+ + +++K+ Sbjct: 147 EVSGMYYDYKIGTIPQGFVDLRFDSILKGLKIPSFGKHDALNDAIMTGLIFLKL 200 >gi|169831719|ref|YP_001717701.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator MP104C] gi|169638563|gb|ACA60069.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator MP104C] Length = 236 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 7/162 (4%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTGL D +I + V ++ N F + P R+ A + GIT Sbjct: 49 YSVIDTETTGLRPDAGDEVISVACVRVVSAKIQNDYFYTLVDPE-REVPELAATITGITT 107 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E ++ +P + N +FD+ F+N L+R L+P ++D L Sbjct: 108 ERVQGQPVLEKVLPRMLREMA--GGVITGFNIQFDLVFLNNGLKRKCGTTLNPPMVLDVL 165 Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168 S+ R P +R L ++ + Y I++ R H AL D+ + + Sbjct: 166 SLCRILKPRARTFGLGAMAREYQISVKDR--HNALGDALITA 205 >gi|208435412|ref|YP_002267078.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27] gi|208433341|gb|ACI28212.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27] Length = 264 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 8/161 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 52 FIDLETTGSCPIKHEILEIGAVQVRGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 108 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 109 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 165 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R S R L+ L + G I H A D+ ++ Sbjct: 166 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLF 204 >gi|167035320|ref|YP_001670551.1| ribonuclease T [Pseudomonas putida GB-1] gi|166861808|gb|ABZ00216.1| ribonuclease T [Pseudomonas putida GB-1] Length = 224 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + K T+ + P G AL+ Sbjct: 31 PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGANIEAAALEFT 90 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 GI D L+ S S ++ + A + HN+ FD+GF+NA + R + Sbjct: 91 GIKLDHPLRMAVSEESALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDL 150 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ I R H A D+ ++++ Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCG 208 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 209 IVNRWKEMG 217 >gi|206890301|ref|YP_002247886.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742239|gb|ACI21296.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 230 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 14/182 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D E TGL+ D II IGA+++ + F + P+ +K E++ +H IT Sbjct: 24 FVVVDTELTGLNEFRDNIIAIGAIKMKGRTIKIGDIFYRTVSPSTKKFRKESIMIHEITP 83 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L+ P I EF F +N + H D+ F+ E++ ++ +P IDTL Sbjct: 84 SELEKCPQIEPILREFIKF--SKNCLVVGHCVDIDLTFLKKEIRNNLREIFEPFS-IDTL 140 Query: 128 SIARRKHPSS--------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I + +N L + + I + H AL D+ + + ++ +++ Sbjct: 141 LIYKWLIKKEILPSDFSNKNSLEDIA--LSLDIEPKELHDALSDAFITAQIFQRLLAYLG 198 Query: 180 QI 181 ++ Sbjct: 199 EL 200 >gi|28871300|ref|NP_793919.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000] gi|301384500|ref|ZP_07232918.1| ribonuclease T [Pseudomonas syringae pv. tomato Max13] gi|302130507|ref|ZP_07256497.1| ribonuclease T [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999382|sp|Q87XM0|RNT_PSESM RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|28854550|gb|AAO57614.1| ribonuclease T [Pseudomonas syringae pv. tomato str. DC3000] gi|331015669|gb|EGH95725.1| ribonuclease T [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 225 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + + T+ + P G AL+ Sbjct: 32 PVVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFT 91 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 GI D L+ S + ++ + A + HNA FD+GF+NA + R+ Sbjct: 92 GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 210 IVNRWKEMG 218 >gi|261879422|ref|ZP_06005849.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella bergensis DSM 17361] gi|270333990|gb|EFA44776.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella bergensis DSM 17361] Length = 287 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 12/176 (6%) Query: 2 IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N + I+FD+ETTGLD DRII+I +++ R +F+ P + P Sbjct: 1 MKLNLTKPLIIFDLETTGLDLATDRIIQISYIKVDPQGNEERK-SLFVNPE-KPIPPFVQ 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118 +L ITD+ +KD P+F I + F ++ N +FDV + E R D Sbjct: 59 ELTHITDDMVKDAPTFKQIAKSLQETFA--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDF 116 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY--GITISHRSKHGALLDSHLLSDVYI 172 R+ID +I + P +L + + Y H A D+ V Sbjct: 117 QRCRLIDAQNIFHKMEP---RNLAAAYRFYTGNKMEDDFQAHRADEDTEATYRVLQ 169 >gi|317154702|ref|YP_004122750.1| exonuclease RNase T and DNA polymerase III [Desulfovibrio aespoeensis Aspo-2] gi|316944953|gb|ADU64004.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio aespoeensis Aspo-2] Length = 179 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 8/163 (4%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R + D ET D+K D +G V ++D + + P R+ +P +++HGI Sbjct: 9 RFVAIDFETA--DAKRDSACAVGLV-VVDRGEIVARDYRLIRPPRRRFNPFCVQVHGIHW 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + D+P+F ++ + F + +AHNA FD + A R ++ + T+ Sbjct: 66 EDVADQPAFGELWPDLSPLFEGAD-FLVAHNASFDKSVLAACC-RESRCLPPVQPFLCTV 123 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 +AR N L ++C GIT++H H A D+ + + Sbjct: 124 QLARTTWQLPSNKLPNVCCHLGITLTH---HHAASDAEACARI 163 >gi|224438091|ref|ZP_03659030.1| DNA polymerase III subunit epsilon [Helicobacter cinaedi CCUG 18818] Length = 233 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 8/168 (4%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + + DIET G ++ IIEIGA+ + + S+ +F+ ++ +L Sbjct: 47 WQEGEFVFVDIETNGAKPQSSEIIEIGALRVKN-SQILESFESYVYAPF--VPENITELT 103 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI E +++ P + F +F ++AHN FD F++ L++ L + Sbjct: 104 GIRQEDIQNAPQSKEVLRAFREFLG--GGVFVAHNVNFDFSFLDYHLRQNGLFGLL-NPK 160 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + T+ +A++ S R L+ L + GI + H A D+ ++ Sbjct: 161 LCTIDLAKKTILSKRYALSYLNEFLGINTAM--SHRAYADALTSFRIF 206 >gi|330877336|gb|EGH11485.1| ribonuclease T [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966675|gb|EGH66935.1| ribonuclease T [Pseudomonas syringae pv. actinidiae str. M302091] Length = 225 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + + T+ + P G AL+ Sbjct: 32 PVVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFT 91 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 GI D L+ S + ++ + A + HNA FD+GF+NA + R+ Sbjct: 92 GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 210 IVNRWKEMG 218 >gi|219850553|ref|YP_002464986.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM 9485] gi|219544812|gb|ACL26550.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM 9485] Length = 233 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 20/199 (10%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLC-PNGRKNSPEA 59 + ++ V D+ETTGLD ++D +I IGAV + + +T+ + P GR+ S E+ Sbjct: 31 LPWREVPYTVIDVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVES 90 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ----RINK 115 +++H +T E L+D P + + +E + + H A+ DV FINA L+ R+ + Sbjct: 91 IRVHHLTPEELRDAPPPAEVLAELLRLIAGR--VLVVHVAEIDVRFINAALKPFGGRLRR 148 Query: 116 DPLDPSRIIDTLSIAR-------RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLS 168 LD +R+ TL + R P+ +L L G+ I ++H AL D+ + Sbjct: 149 PILDTARLAMTLHLNAQWLGELPRDMPAPAVELRGLTGALGLPIY--AQHNALNDAVTTA 206 Query: 169 DVYIK---MMVGGSQINFG 184 ++I ++ + N Sbjct: 207 QLFIAQATLLADQGRNNLA 225 >gi|242371797|ref|ZP_04817371.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W1] gi|242350498|gb|EES42099.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W1] Length = 213 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V+++D T +F + P + + +HGI E Sbjct: 35 FVALDFETA--NGKRTSICSVGMVKVIDNQIT-ESFYTLVNPFDY-FTETNINVHGIKPE 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ PSF ++ F ++ +AHNA FD+ ++ L+++N + + Sbjct: 91 DVEGAPSFEYVYPYMLQFIDQ--LPVVAHNAAFDMNVLHQSLKQLNIET-PSMTYFCSYQ 147 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+R + R L L Y + H AL D+ + + +++ Sbjct: 148 LAKRTIDAYRYGLKHLMNHYKLDF--HGHHDALNDAKACAMITFRLL 192 >gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis] gi|1090178|prf||2018296A DNA polymerase III Length = 1435 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 6/168 (3%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +V+DIETTGL + +I+ GA + + T F+ P K KL GI Sbjct: 401 DQEYVVYDIETTGLSPMLNELIQFGASVIKNGRII-ETHHFFIKPKS-KLDSFTTKLTGI 458 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E L+ + F + +AHNA FD F+ + N + + ID Sbjct: 459 TQEHLEKGYELQEALEKISSIFKAR--IMVAHNAAFDHNFLKQKFIDNNIE-FEEMISID 515 Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 TL++A+ +P R L + + + H A DS +L++++I Sbjct: 516 TLNLAKVLNPIYRSYRLGEVASKLSVVYDPSIAHRADYDSSVLTNIFI 563 >gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP] gi|14424449|sp|P47729|DPO3_MYCPU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma pulmonis] Length = 1435 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 6/168 (3%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +V+DIETTGL + +I+ GA + + T F+ P K KL GI Sbjct: 401 DQEYVVYDIETTGLSPMLNELIQFGASVIKNGRII-ETHHFFIKPKS-KLDSFTTKLTGI 458 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E L+ + F + +AHNA FD F+ + N + + ID Sbjct: 459 TQEHLEKGYELQEALEKISSIFKAR--IMVAHNAAFDHNFLKQKFIDNNIE-FEEMISID 515 Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 TL++A+ +P R L + + + H A DS +L++++I Sbjct: 516 TLNLAKVLNPIYRSYRLGEVASKLSVVYDPSIAHRADYDSSVLTNIFI 563 >gi|27904678|ref|NP_777804.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29611836|sp|P59497|RNT_BUCBP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|27904075|gb|AAO26909.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 217 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 18/207 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSP 57 R +V DIET G + + D I+EI + L + + P G + Sbjct: 13 RFRTFYPVVIDIETAGFNPETDAILEIAIITLKMNEFGLLEKEHLLHFHIQPFKGSRIDK 72 Query: 58 EALKLHGITD-EFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109 +A++ HGI L+ S ++ N + +AHNA FD F+ A Sbjct: 73 KAIEFHGIDPFSPLRRAISEYEALYSIFNLIHKGIKSNNCTKSIIVAHNAIFDYNFLTAA 132 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + R I +P I DT +++ + L CK G+T + H AL D+ Sbjct: 133 ITRTKIKNNPFHSFVIFDTATLSGLA--VGQTVLARACKAIGLTFDNNQAHSALYDTQQT 190 Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFK 194 ++++ K++ + G+ N+ R K Sbjct: 191 ANLFCKIVNRWKTLG-GWPPNDTRTIK 216 >gi|312872015|ref|ZP_07732095.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2062A-h1] gi|312873705|ref|ZP_07733751.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2052A-d] gi|315653310|ref|ZP_07906232.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners ATCC 55195] gi|325911899|ref|ZP_08174303.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 143-D] gi|311090805|gb|EFQ49203.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2052A-d] gi|311092468|gb|EFQ50832.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners LEAF 2062A-h1] gi|315489235|gb|EFU78875.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus iners ATCC 55195] gi|325476405|gb|EGC79567.1| exonuclease, DNA polymerase III, epsilon subunit family [Lactobacillus iners UPII 143-D] Length = 177 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 9/168 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M D ET + D + V + D + +F + P +K+HGIT Sbjct: 1 MNFTAMDFETA--NRHYDSACSLALVLVRDNKIID-SFYTVINPQ-MPFDKNNIKIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +KD P+ ++ + + +AHNA+FD + L++ N IDT Sbjct: 57 ANDVKDAPTMDEVWPKIR-LLFQPGMLVVAHNARFDCNVMKKSLKKYNIAE-PHYLTIDT 114 Query: 127 LSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L+ +R P+ +N L+++ + I + H H AL DS +++ IK Sbjct: 115 LATSRALIPNLKNYRLDTVSNQLNIDLWHH--HNALSDSEACAEILIK 160 >gi|218261817|ref|ZP_03476532.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii DSM 18315] gi|218223763|gb|EEC96413.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii DSM 18315] Length = 256 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 15/210 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K + FD+ETTG++ DRI+EI V++ K + + P PE+ Sbjct: 1 MQLNLKNPLVFFDLETTGINIVKDRIVEISFVKVYPNGK-EESKTRRINPE-MPIPPEST 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118 +HGITDE +KD P+F I + + +N +FD+ + E R D L Sbjct: 59 AIHGITDEDVKDCPTFKEIAKSLATQI--EGCDLAGYNSNRFDIPLLAEEFLRAGVDIDL 116 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + + ID +I H + L++ K Y S + H A D+ +V + Sbjct: 117 NRRKFIDVQTI---FHKMEQRTLSAAYKFY-CDKSLENAHTAEADTMATYEVLKAQLDRY 172 Query: 179 SQINFGFKTNEDRFFKEEKKTVPNISLLKR 208 ++ N+ F + N+ R Sbjct: 173 PELQ-----NDIDFLSKYSSYTNNVDFAGR 197 >gi|297808725|ref|XP_002872246.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp. lyrata] gi|297318083|gb|EFH48505.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp. lyrata] Length = 316 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 19/184 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + IV D+ETTGL+ K +RIIEI A +L TFQ + P +HGI Sbjct: 109 LTVIVSDLETTGLNRKRERIIEIAAQDLAGGGY--STFQTLVNPGDVPV--TNTDIHGIR 164 Query: 67 DEFL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPL 118 + + + P + F + + +AHN FD F+ E R + + Sbjct: 165 TDMVCRPEVPRMEELIPIFLQYVESRQKPGGYVMLVAHNGKSFDFRFLINEFNRCSYEIP 224 Query: 119 DPSRIIDTL----SIARRKHPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 ++D+L + P+ + L L + Y +T H AL D LLS V+ Sbjct: 225 HNWLLLDSLPLGREHMKSLDPTGKPKASLKVLQEHYSLTREG-DAHRALSDVLLLSKVFQ 283 Query: 173 KMMV 176 K+ + Sbjct: 284 KLTI 287 >gi|327479762|gb|AEA83072.1| ribonuclease T [Pseudomonas stutzeri DSM 4166] Length = 224 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+E G + D ++EI AV + + T + P G P Sbjct: 25 RFRGFLPVVIDVECGGFNCATDALLEIAAVTVGMDEQGLLYPQDTLFYRVEPFAGANIEP 84 Query: 58 EALKLHGI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109 AL+ GI D L+ ++ + + A + HN+ FD+GF+NA Sbjct: 85 AALEFTGIKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGFLNAA 144 Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + R ++P P DT ++A + + L C+ GI R H A D+ Sbjct: 145 IARCEIKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKT 202 Query: 168 SDVYIKMMVGGSQIN 182 ++++ ++ ++ Sbjct: 203 AELFCGIVNRWKEMG 217 >gi|313123567|ref|YP_004033826.1| 3'-5' exonuclease with to crispr-associated protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280130|gb|ADQ60849.1| 3'-5' exonuclease with to CRISPR-associated protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 290 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 13/169 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGL++++D+I+ IGAV+ F + + ++L GIT Sbjct: 126 FVAVDIETTGLNTESDQILSIGAVKHD-----GTEFYRLIK-QDIDVPKQIVELTGITPA 179 Query: 69 FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L K+ + E DF + + +N +FD F+N E ++ L + I D L Sbjct: 180 MLDKEGVPLQDVLGELTDFVG--DVPIVGYNFRFDSAFLNREYRKCGMQEL-KNEIKDLL 236 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +RK L ++ YGI ++ H A+ D+ ++ +K++ Sbjct: 237 PVVKRKEKFLDNYKLQTVLSNYGIE--NKVPHNAVSDARATKELAMKLI 283 >gi|15645997|ref|NP_208178.1| DNA polymerase III subunit epsilon [Helicobacter pylori 26695] gi|2314554|gb|AAD08426.1| DNA polymerase III epsilon subunit (dnaQ) [Helicobacter pylori 26695] Length = 350 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 90/231 (38%), Gaps = 16/231 (6%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 168 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 224 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 +R S R L+ L + G I H A D+ ++ ++ ++ T + Sbjct: 225 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNL--PSYIKTTMDL 280 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEELDE----HDKTIQTLGKNAIW 237 F + T+ R + + + + E + H L ++ + Sbjct: 281 IDFSKCANTLIKRPPKARYQEIPSPFSLFEKTKGLFNHKSN--QLNESCLM 329 >gi|312978151|ref|ZP_07789895.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus CTV-05] gi|310894869|gb|EFQ43939.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus CTV-05] Length = 926 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 9/171 (5%) Query: 6 KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K V D+ETTG +N II+ G + + K +T+ + P+ R+ + L G Sbjct: 7 KDTFAVVDLETTGTQRENGHHIIQFGCAIIKNR-KVVKTYSFLINPH-REIPQSVVNLTG 64 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I D+ + + F + QN ++AHN FD+ F+N EL + + L ++ I Sbjct: 65 IHDQDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 DT+ +A+ P+ L+ L + GI H H A D++ + + +++ Sbjct: 122 DTVELAKIAFPTFPSYKLSDLTTQLGIK--HLDPHKADSDAYGTAVLLLEI 170 >gi|303326602|ref|ZP_07357044.1| exonuclease [Desulfovibrio sp. 3_1_syn3] gi|302862590|gb|EFL85522.1| exonuclease [Desulfovibrio sp. 3_1_syn3] Length = 175 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 10/165 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET+G + + + + ++ + F L P + ++HG+T Sbjct: 9 VAIDFETSGYAAHSACAVGLA---RIEDGRVTDCFYRLLRPPSARVL--FTEIHGLTWPM 63 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+D PSF+ + E +AHNA FD + A + P + + TL Sbjct: 64 LRDAPSFAQAWPE-AGAILCGAHFLLAHNASFDRRVLLACCRAAGL-PAPEAPFLCTLKG 121 Query: 130 ARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +RR P LN +C+ +GI + H H A D+ ++VY+++ Sbjct: 122 SRRSLPLPSKKLNLVCEYFGIALKH---HNAASDAQACAEVYLRL 163 >gi|330957749|gb|EGH58009.1| ribonuclease T [Pseudomonas syringae pv. maculicola str. ES4326] Length = 225 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + + T+ + P G AL+ Sbjct: 32 PVVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFAGANIEAAALEFT 91 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 GI D L+ S + ++ + A + HNA FD+GF+NA + R+ Sbjct: 92 GIKLDHPLRMAVSEETALNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 210 IVNRWKEMG 218 >gi|163848613|ref|YP_001636657.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus J-10-fl] gi|222526548|ref|YP_002571019.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl] gi|163669902|gb|ABY36268.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus J-10-fl] gi|222450427|gb|ACM54693.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl] Length = 278 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 12/183 (6%) Query: 10 IVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I FD+ETTGL+ + RI E+ + + R + P R+ P+A +++G+ Sbjct: 16 IFFDVETTGLEIQAGHRICEVAMLRWEHGQEVGR-INTLINPE-RELDPQAAQINGLQPA 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + P F+ I + QNA IAHN FD F+N EL R P +DTL Sbjct: 74 ELNNAPLFTDIAPQVVQL--SQNAVRIAHNLPFDESFLNMELCRAGYPPF-TGPALDTLE 130 Query: 129 IARRK-HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +ARR L +L +G+ H A+ D L ++ + I+FG T Sbjct: 131 LARRLGIRRGSLSLAALATTFGLPAP---THRAMDDVLTLRALFDHFVN--EMISFGIIT 185 Query: 188 NED 190 D Sbjct: 186 LGD 188 >gi|314934059|ref|ZP_07841422.1| exonuclease [Staphylococcus caprae C87] gi|313653170|gb|EFS16929.1| exonuclease [Staphylococcus caprae C87] Length = 184 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V++++ T +F + P + + +HGI E Sbjct: 6 FVALDFETA--NGKRTSICSVGMVKVINNQIT-ESFYTLVNPFDY-FTETNINVHGIRPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D PSF ++ F NE +AHNA FD+ ++ L+ +N + + Sbjct: 62 DVEDAPSFEYVYPYMLQFINE--LPVVAHNAAFDMNVLHQSLKSLNIET-PSMTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+R + R L L Y + H AL D+ + + +++ Sbjct: 119 LAKRTIDAYRYGLKHLMNHYQLDF--HGHHDALNDAKACAMITFRLL 163 >gi|182418640|ref|ZP_02949917.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521] gi|237668503|ref|ZP_04528487.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377502|gb|EDT75056.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521] gi|237656851|gb|EEP54407.1| exonuclease, DNA polymerase III, epsilon subunit family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 308 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 106/258 (41%), Gaps = 40/258 (15%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K IG V + + S+ + P + P + +HGI Sbjct: 1 MDYIAIDFETA--NEKRSSPCSIGIVVVKN-SEVVEKIHYLIKPKEMRFMPINIGIHGIR 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++++P F I+ +F+ N IAHNA FD+ + ++ N +P+ + I T Sbjct: 58 PGMVENEPEFDEIWKRIKGYFD--NGFVIAHNASFDISVLRRTMELYNIEPVS-FKYICT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM----------- 174 + +++ +P + LN++ + G H H AL D+ S++ I + Sbjct: 115 MKLSKNFYPQIENSKLNTVNRFLGYEFDH---HDALADALACSNILINISKELGNEDIDE 171 Query: 175 --------MVGGSQINFGFKTNEDRFFKEEKKTV----------PNISLLKRDKPLFT-R 215 + ++ + + + R F++ + PN + K D +FT R Sbjct: 172 ICRCVGVTIGNVNEEGYKPSSAKGRIFRKSSRVSSCNNSNSLGNPNYDVFKGDTVVFTGR 231 Query: 216 ITKEELDEHDKTIQTLGK 233 ++ DE + ++ LG Sbjct: 232 LSSMTRDEAIRLVRRLGG 249 >gi|309791196|ref|ZP_07685728.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] gi|308226758|gb|EFO80454.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6] Length = 272 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 12/216 (5%) Query: 4 KNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62 + + + FD+ETTGLD + R+ E+ + + + L P+ R PEA + Sbjct: 9 LDDLPLVFFDLETTGLDLRAGHRVCELALLRVR-GAAVEDYLGSALRPD-RLLDPEAAAV 66 Query: 63 HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122 +G D L+ P F+S+ A IAHN FD+ F+NAEL RI + PL Sbjct: 67 NGFQDAELRGAPRFASVAGRVQRM--AHGAVLIAHNLPFDMAFLNAELARIGQPPLASVT 124 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 +DTL +ARR L +L + +G+ R H AL D L V+ ++ + +++ Sbjct: 125 -LDTLVLARRLLRRPSYSLAALAEHFGLP---RPTHRALADVLALRGVFAQLQLAMAEL- 179 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITK 218 G T +D + E+ P ++ + + + Sbjct: 180 -GVTTLQD-VLRLERGLAPGVAEPNAPAIIAQALAE 213 >gi|163782941|ref|ZP_02177936.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1] gi|159881621|gb|EDP75130.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1] Length = 215 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 89/184 (48%), Gaps = 10/184 (5%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALK 61 + + +VFD ETTGLD + ++ IGA+ +++YS + +F F+ P ++ + +++ Sbjct: 34 KVEETTFVVFDTETTGLDLRRAELVSIGALRVVNYSFNLSESFHRFVKP--KELTRVSVE 91 Query: 62 LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGIT L K S + +F ++ + + + N +FD + ++ PL Sbjct: 92 IHGITPHELEKKAESHDRVLEDFMEYV--RGSVLVGFNVEFDRKIVEKYSLKVLGLPLLN 149 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 R +D + +++ L + + GI + H AL D+++ + V++K++ Sbjct: 150 YR-LDVFRLWKKRG-GREGSLKDIAEELGIPVVG--AHSALDDAYITALVFLKLLKRFRG 205 Query: 181 INFG 184 N Sbjct: 206 ANLS 209 >gi|262277835|ref|ZP_06055628.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium HIMB114] gi|262224938|gb|EEY75397.1| DNA polymerase III PolC-type (PolIII) [alpha proteobacterium HIMB114] Length = 223 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 7/178 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59 I + + VFD ETTGL+ D+II + V++ ++ T F P + +PE Sbjct: 20 IDISDVTFSVFDTETTGLNYNSGDKIISVSGVKVQNFQIDTEGKLDEFCDP-MVEITPEN 78 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD-PL 118 ++H I++ +K KP+ + S+F FF + +AHN KFD F+ + L + + Sbjct: 79 EQIHHISNRMVKGKPNIYDLESKFRGFFKR--SVLVAHNVKFDCNFLISNLSHTKLESRI 136 Query: 119 DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +DT+ + +P + +L++LC IT + +H +L DS + + ++I ++ Sbjct: 137 REAVKLDTVLYSAGVYPDLKSYELSALCDELNITHHDQLRHSSLGDSIITARLFIHLL 194 >gi|325275194|ref|ZP_08141161.1| ribonuclease T [Pseudomonas sp. TJI-51] gi|324099681|gb|EGB97560.1| ribonuclease T [Pseudomonas sp. TJI-51] Length = 224 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + K T+ + P G AL+ Sbjct: 31 PVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYFHRVEPFEGANIEAAALEFT 90 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 GI D L+ S + ++ + A + HN+ FD+GF+NA + R + Sbjct: 91 GIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARNDV 150 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ I R H A D+ ++++ Sbjct: 151 KRNPFHPFSSFDTATLAGLAY--GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCG 208 Query: 174 MMVGGSQIN 182 ++ + Sbjct: 209 IVNRWKDLG 217 >gi|260102980|ref|ZP_05753217.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] gi|260083211|gb|EEW67331.1| DNA polymerase III [Lactobacillus helveticus DSM 20075] gi|328464560|gb|EGF35931.1| DNA polymerase III [Lactobacillus helveticus MTCC 5463] Length = 317 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 6/164 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL DRI E+G V++ + ++ + P K KL+GIT+E Sbjct: 33 YTMLDVETTGLSPFRDRITELGGVKVRNGQIVDQYTNLVKFPKNNKVPAFITKLNGITEE 92 Query: 69 FLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L + EF +F + I +N FD+ F+ Q+ N P+ + +D L Sbjct: 93 QLTNEGIPAEQAIKEFREFIGDD--TIIGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVL 149 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +AR +P N L +R GI + +H L DS VY Sbjct: 150 RLARVYYPRQHNRLIDCMQRAGI--AQVEQHHGLADSLDTIKVY 191 >gi|229588692|ref|YP_002870811.1| ribonuclease T [Pseudomonas fluorescens SBW25] gi|229360558|emb|CAY47415.1| ribonuclease T [Pseudomonas fluorescens SBW25] Length = 223 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G + D ++EI A ++ + T + P G AL+ Sbjct: 30 PVVIDVETGGFNCATDALLEIAATTIGMDEQGFVFPEHTHFFRVEPFEGANIEAAALEFT 89 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 GI D L+ S + ++ + A + HN+ FD+GF+NA + R + Sbjct: 90 GIKLDHPLRMAVSEEAALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDM 149 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 150 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 207 Query: 174 MMVGGSQIN 182 ++ Q+ Sbjct: 208 IVNRWKQMG 216 >gi|170769422|ref|ZP_02903875.1| exodeoxyribonuclease X [Escherichia albertii TW07627] gi|170121746|gb|EDS90677.1| exodeoxyribonuclease X [Escherichia albertii TW07627] Length = 220 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVVDGKIVNPMSH-LVRPD-RPITPQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|307720491|ref|YP_003891631.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] gi|306978584|gb|ADN08619.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas autotrophica DSM 16294] Length = 269 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I + + DIET G + +IIE+ AV++ + +R F+ + + ++ +P + Sbjct: 62 IPIQEAEFCIVDIETNGSKIEKHQIIELAAVKVKNGQIIDR-FESLV--HTKEINPHITE 118 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 + GI + + P + F F NA ++AH+ KFD FI+ LQ+I +PL + Sbjct: 119 ITGIAADDTTNAPQLKDVLIRFKLFLG--NAVFVAHDVKFDYSFISKSLQKIGLEPLL-N 175 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R + +L++A R S R L+ L + + R H A+ D ++ ++ + Sbjct: 176 RSLCSLALAERTVVSYRYALSYLNETLKLNPKAR-HHRAMSDVITTYGLF---LLSLDNL 231 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDKPL 212 + KT ED + K P + K D L Sbjct: 232 DENIKTVEDLI--KFSKEAPRLKRPKFDPLL 260 >gi|298737180|ref|YP_003729710.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8] gi|298356374|emb|CBI67246.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8] Length = 323 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 8/161 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 168 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 224 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R S R L+ L + G I H A D+ ++ Sbjct: 225 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLF 263 >gi|154148582|ref|YP_001406342.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC BAA-381] gi|153804591|gb|ABS51598.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC BAA-381] Length = 262 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 15/209 (7%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 I ++ DIET G +IIEIGA+++ + TF+ F+ ++ Sbjct: 68 ISLDEADFCFVDIETNGG-IDKGQIIEIGAIKVR-AKEILNTFKTFV--YASNIPENIVE 123 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L GI LK+ P S++ F F ++ ++AHN KFD GFI+ LQ+I L + Sbjct: 124 LTGIHTNDLKNAPHLSNVLENFRLFLG--DSVFVAHNVKFDYGFISESLQKIGFGGLL-N 180 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 R IDT+ +A+R + + L+SL + GI H H A D+ +++ ++ Sbjct: 181 RRIDTIDLAKRTIAAQKYGLSSLKELLGIENEH---HRAFSDALSCYEIFKFCT---QKL 234 Query: 182 NFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 + +T ED E KT +++L K +K Sbjct: 235 PWYVQTIEDLI--EFSKTAKSLALPKTNK 261 >gi|288934625|ref|YP_003438684.1| exonuclease RNase T and DNA polymerase III [Klebsiella variicola At-22] gi|290508826|ref|ZP_06548197.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55] gi|288889334|gb|ADC57652.1| Exonuclease RNase T and DNA polymerase III [Klebsiella variicola At-22] gi|289778220|gb|EFD86217.1| exodeoxyribonuclease X [Klebsiella sp. 1_1_55] Length = 219 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D TN + P+ R +P+A+ +H IT+E + Sbjct: 4 VIDTETCGLQGG---IVEIASVDIVDGRITNPMSH-LVRPD-RPITPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + + ++AHNA FD + P I T+ +A Sbjct: 59 ADKPWIEEIIPHYL-----GSPWYVAHNASFDRRVL----------PEMSGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + L K + + H AL D ++ + + + ++ Sbjct: 104 RRLWPGIKYSNMGLYKSRKLNVATPPGLHHHRALYDCYITAALLLDII 151 >gi|295424856|ref|ZP_06817571.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664] gi|295065422|gb|EFG56315.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664] Length = 934 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 9/178 (5%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K V D+ETTG + N+ II+ G ++ K +T+ + P+ R+ L Sbjct: 7 KDTFAVVDLETTGTQRENNNHIIQFGC-AIIKNMKVVKTYSFMINPH-REIPLSVQNLTR 64 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I +E ++ P FS + ++ ++AHN FD+ F+N EL + L ++ I Sbjct: 65 IHNEDVEKAPDFSHYAKKIIAIL--EDTVFVAHNVNFDLPFLNYELMQHGYPAL-TNKAI 121 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 DT+ +A+ P+ L+ L R I H + H A D++ + + I ++ ++ Sbjct: 122 DTVELAKIAFPTLPSYKLSDLTSRLAIK--HLNPHKADSDAYGTAILLIDIIHRLEKL 177 >gi|168462596|ref|ZP_02696527.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633859|gb|EDX52211.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 232 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + P P I T+ ++ Sbjct: 59 ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176 RR P + +L K +++ H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 152 >gi|314055097|ref|YP_004063435.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus tauri virus 2] gi|313574988|emb|CBI70001.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus tauri virus 2] Length = 447 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 22/229 (9%) Query: 7 MRKIVFDIETTGL---------------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 M I FD ET+GL + R + + A + +TF + PN Sbjct: 5 MNYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIRPN 64 Query: 52 GRKNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 G + E++ +HGI++E L + F +F +F +F + +AHNA+FD + +E+ Sbjct: 65 GFQIGEESIAIHGISNEKALSEGRPFPDVFKDFMEFIGPRTKTLVAHNAQFDTSVLQSEM 124 Query: 111 QRINKDPLDPSRII--DTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLL 167 R ++ TL + R + L L +G + H +L DS Sbjct: 125 LRHGIPLEQIDDLVIRCTLEMYRDRF-MGPIKLTKLYADIFGEEFDN--AHNSLADSIAC 181 Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 VY ++ + + + I+ K+ + L + Sbjct: 182 GRVYPYLLGQTERTLKPLPIKKVIIGASSVASAIGINQYKKPQELVEEL 230 >gi|152970907|ref|YP_001336016.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895421|ref|YP_002920156.1| exodeoxyribonuclease X [Klebsiella pneumoniae NTUH-K2044] gi|150955756|gb|ABR77786.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547738|dbj|BAH64089.1| exodeoxyribonuclease X [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 219 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D TN + P+ R SP+A+ +H IT+E + Sbjct: 4 VIDTETCGLQGG---IVEIASVDIVDGQITNPMSH-LVRPD-RPISPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + + ++AHNA FD + P I T+ +A Sbjct: 59 ADKPWIEEIIPHYH-----GSPWYVAHNASFDRRVL----------PEMHGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + L K + + H AL D ++ + + + ++ Sbjct: 104 RRLWPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLLDII 151 >gi|149179899|ref|ZP_01858404.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1] gi|148852091|gb|EDL66236.1| DNA polymerase III, alpha subunit [Bacillus sp. SG-1] Length = 245 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 85/174 (48%), Gaps = 8/174 (4%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGIT 66 +FD+ETTG + D I+ IGA+++ ++ TF + P + S E + G+ Sbjct: 63 FTIFDLETTGFFPEIGDEIVSIGAIKMQGNKILDQKTFYEVINP-LQNVSLETKRFTGLR 121 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + +F +F + +AH A FD+ F+ +++ + +P ID+ Sbjct: 122 RTDFIKAKTLPVGLKDFLEFC--KGTILVAHPASFDINFLQKRIRKWDLPSFEP-EYIDS 178 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 ++A+ + L+ L K++ I S +++H AL D+ + ++V+ ++++ + Sbjct: 179 YALAKELLNEQKCYLDDLVKKFQI--SEKTRHHALNDAIMTAEVFQELLILCKE 230 >gi|317014965|gb|ADU82401.1| DNA polymerase III subunit epsilon [Helicobacter pylori Gambia94/24] Length = 287 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 8/161 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVRGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R S R L+ L + G I H A D+ ++ Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLF 227 >gi|297584199|ref|YP_003699979.1| DNA polymerase III subunit epsilon [Bacillus selenitireducens MLS10] gi|297142656|gb|ADH99413.1| DNA polymerase III, epsilon subunit [Bacillus selenitireducens MLS10] Length = 242 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 10/174 (5%) Query: 5 NKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTN--RTFQVFLCPNGRKNSPEALK 61 + + VFD+ETTG D ++ IGA + L+ ++ + F + P + S Sbjct: 56 DNITFTVFDLETTGFFCNLGDEVLAIGATK-LNRNRIDFPEQFYEVIEP-VKPMSAFVSN 113 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+T E + +F FS+F +F + + +AH A FDV F+ R DP Sbjct: 114 LTGMTHEEVTAGLAFPEAFSKFLEF--SKGSILVAHPASFDVQFLKILADRWRLHGYDP- 170 Query: 122 RIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ID +A+ +P RN L+ L K Y I S R H AL D+++ + V+ ++ Sbjct: 171 LYIDQYQLAKSLYPRKRNSLDELIKLYQIETSGR--HHALADAYMTATVFHHLL 222 >gi|144901019|emb|CAM77883.1| DNA polymerase III epsilon chain-like protein [Magnetospirillum gryphiswaldense MSR-1] Length = 619 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 84/177 (47%), Gaps = 11/177 (6%) Query: 3 RKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEAL 60 + + + + FD ETTGL + DR+I++GAV + +F+ + P G +++ Sbjct: 424 KLSDLTFVAFDCETTGLRPDQGDRLIQVGAVRIGQGRVLSGESFERLIDP-GIPIPAQSM 482 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 HGI+++ +K KP + + +F F HN FD+ F++A P Sbjct: 483 AYHGISNDMVKGKPPLAVVLPQFAAFAGASALAG--HNVAFDLKFLHAAQGETGIALRQP 540 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGI-TISHRSKHGALLDSHLLSDVYIKMMV 176 ++DT+ +A P L ++ R G+ + HR AL D+ + +++ +++ Sbjct: 541 --VLDTMILAALLDPGYDLSLEAVAGRLGVPPLPHR---SALSDALVTAEILARLIA 592 >gi|33593048|ref|NP_880692.1| putative exonuclease [Bordetella pertussis Tohama I] gi|33563423|emb|CAE42302.1| putative exonuclease [Bordetella pertussis Tohama I] gi|332382461|gb|AEE67308.1| putative exonuclease [Bordetella pertussis CS] Length = 224 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 10/168 (5%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 +R +V D+ETTGL I+E AV + + R F + +GR P + Sbjct: 50 LRALDGPFVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGRVL-PFISR 108 Query: 62 LHGITDEFL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GIT + +D F +F DF + HNA FD F+ A R Sbjct: 109 LTGITQAEVERDGVPVRQAFGDFLDFI--EGGPLFFHNASFDRRFLQAAADRTGLPF--E 164 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 ++ TL +AR+ P + LN L + G + H AL D Sbjct: 165 AQTHCTLMLARQAWPELPSHKLNVLARHLG---ASEPTHRALADVRTT 209 >gi|188995649|ref|YP_001929901.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis ATCC 33277] gi|188595329|dbj|BAG34304.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis ATCC 33277] Length = 259 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 16/211 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 M K I FD+ETTG+D DRI+EI ++++ D S+ +T + P R PE+ Sbjct: 1 MKLNLKNPLIFFDLETTGVDLVRDRIVEISILKVMPDGSEECKT--RRINPE-RSIPPES 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP- 117 +HGITDE +KD P F S+ + + + N +FDV + E R D Sbjct: 58 TAIHGITDEDVKDCPPFRSVAKSLAQWI--EGCDLAGFNSTRFDVPMLVEEFLRAGVDID 115 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L ++ID +I + P L + + Y + + H A D+ DV+ + Sbjct: 116 LRHRKLIDVQTIFHKMEP---RTLEAATRFY-CNRTLENAHSAEADTRATYDVFKAQLDR 171 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208 G N+ F + + N+ R Sbjct: 172 YE----GTLENDMAFLADFSRQSRNVDFAGR 198 >gi|194442926|ref|YP_002041143.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401589|gb|ACF61811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 232 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + P P I T+ ++ Sbjct: 59 ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176 RR P + +L K +++ H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 152 >gi|168241502|ref|ZP_02666434.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450291|ref|YP_002045931.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408595|gb|ACF68814.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339659|gb|EDZ26423.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 232 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + P P I T+ ++ Sbjct: 59 ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176 RR P + +L K +++ H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 152 >gi|206579741|ref|YP_002237768.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342] gi|206568799|gb|ACI10575.1| exodeoxyribonuclease X [Klebsiella pneumoniae 342] Length = 219 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D TN + P+ R +P+A+ +H IT+E + Sbjct: 4 VIDTETCGLQGG---IVEIASVDIVDGRITNPMSH-LVRPD-RPITPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + + ++AHNA FD + P I T+ +A Sbjct: 59 ADKPWIEEIIPYYL-----GSPWYVAHNASFDRRVL----------PEMSGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + L K + + H AL D ++ + + + ++ Sbjct: 104 RRLWPGIKYSNMGLYKSRKLNVATPPGLHHHRALYDCYITAALLLDII 151 >gi|319650832|ref|ZP_08004969.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2] gi|317397430|gb|EFV78131.1| hypothetical protein HMPREF1013_01575 [Bacillus sp. 2_A_57_CT2] Length = 220 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 8/185 (4%) Query: 2 IRKNKMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEA 59 + IVFD ETTG S DRIIEIGAV + + + FQ ++ P R+ S E Sbjct: 21 TPLEDLSFIVFDTETTGFQVSATDRIIEIGAVPVKGFQVQEKDLFQTYVNPK-RQISREI 79 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE-WIAHNAKFDVGFINAELQRINKDPL 118 +L I+DE +KD P F+D+ + A + H FD I +E +R L Sbjct: 80 RELTSISDELVKDAPQALEAILSFFDYVESREAVCLVGHYVGFDALAIKSEFKREKL-AL 138 Query: 119 DPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 IDTL + PS DL +G I R H A+ D+ + +Y++++ Sbjct: 139 KNFLTIDTLDLIGFIAPSYDMRDLERYAMAFGTRIYDR--HSAVGDALTTAYLYVELLFQ 196 Query: 178 GSQIN 182 Q Sbjct: 197 FQQRG 201 >gi|167552492|ref|ZP_02346245.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|197251607|ref|YP_002146145.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215310|gb|ACH52707.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205322894|gb|EDZ10733.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 232 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + P P I T+ ++ Sbjct: 59 ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K +++ H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|300722831|ref|YP_003712123.1| RNase T [Xenorhabdus nematophila ATCC 19061] gi|297629340|emb|CBJ89939.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity [Xenorhabdus nematophila ATCC 19061] Length = 211 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G +++ D ++EI A+ L + T + P G P AL Sbjct: 11 PVVIDVETAGFNARTDALLEIAAITLKMDENGWLMPADTLHFHVDPFEGANLDPAALAFT 70 Query: 64 GITD-EFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAELQR--I 113 GI L+ S + + + A +AHNA FD F+ A +R + Sbjct: 71 GIDPTNPLRGAVSEYTALHAIFKMIRKGMKDTNCNRAIMVAHNASFDHNFVMAAAERSGL 130 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P P DT +++ + L C I H AL D+ + ++ + Sbjct: 131 KRIPFHPFATFDTAALSGLVL--GQTILAKACITAEIPFDSDQAHSALYDTDRTALLFCE 188 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 189 LVNRWKRLG 197 >gi|16760829|ref|NP_456446.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765220|ref|NP_460835.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141480|ref|NP_804822.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62180453|ref|YP_216870.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167993853|ref|ZP_02574946.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233692|ref|ZP_02658750.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168259853|ref|ZP_02681826.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168820696|ref|ZP_02832696.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469318|ref|ZP_03075302.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197265660|ref|ZP_03165734.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200390618|ref|ZP_03217229.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|213419003|ref|ZP_03352069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426806|ref|ZP_03359556.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648159|ref|ZP_03378212.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213851907|ref|ZP_03381439.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583619|ref|YP_002637417.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912063|ref|ZP_04655900.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829019|ref|ZP_06546715.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25511843|pir||AB0741 exodeoxyribonuclease X (EC 3.1.11.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420413|gb|AAL20794.1| DNA exonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503126|emb|CAD05629.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi] gi|29137107|gb|AAO68671.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128086|gb|AAX65789.1| DNA exonuclease X, degrades ss and ds DNA with 3'-5' polarity [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194455682|gb|EDX44521.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197243915|gb|EDY26535.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199603063|gb|EDZ01609.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205328180|gb|EDZ14944.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332278|gb|EDZ19042.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205342565|gb|EDZ29329.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205351180|gb|EDZ37811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224468146|gb|ACN45976.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247049|emb|CBG24868.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993856|gb|ACY88741.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158399|emb|CBW17906.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912871|dbj|BAJ36845.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085616|emb|CBY95394.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224521|gb|EFX49584.1| Exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322714928|gb|EFZ06499.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130162|gb|ADX17592.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988772|gb|AEF07755.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 232 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + P P I T+ ++ Sbjct: 59 ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176 RR P + +L K +++ H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 152 >gi|309811312|ref|ZP_07705099.1| exonuclease [Dermacoccus sp. Ellin185] gi|308434619|gb|EFP58464.1| exonuclease [Dermacoccus sp. Ellin185] Length = 221 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 9/192 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ET+GLD R+IE+ +L R + + G + +HG++D Sbjct: 15 FAVVDVETSGLDPLRHRVIEVAVTQLTPSGGLEREWSSLVRARGGTGP---VHIHGLSDY 71 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F+ + E + + + +AHNA FD F+ AE +R ++ L S + T Sbjct: 72 DVRDAPGFADLVDELSELLDGR--ILVAHNAAFDWAFLAAEARRAGRE-LPVSERLCTWH 128 Query: 129 IAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 +AR + P+ L +L + + I + + H A D +L +V + + + Sbjct: 129 LARGLELPTDNLRLGTLAEYWSIPVEN--AHRAGDDVRVLVEVLRRCLDEAGRRAAPLPL 186 Query: 188 NEDRFFKEEKKT 199 E +T Sbjct: 187 EECAALPRWWRT 198 >gi|312959243|ref|ZP_07773761.1| ribonuclease T [Pseudomonas fluorescens WH6] gi|311286503|gb|EFQ65066.1| ribonuclease T [Pseudomonas fluorescens WH6] Length = 225 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET G + D ++EI A ++ + T + P G AL+ Sbjct: 32 PVVIDVETGGFNCATDALLEIAATTIGMDEQGFVYPEHTHFFRVEPFEGANIEAAALEFT 91 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQR--I 113 GI D L+ S + ++ + A + HN+ FD+GF+NA + R + Sbjct: 92 GIKLDHPLRMAVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDM 151 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKTAELFCG 209 Query: 174 MMVGGSQIN 182 ++ Q+ Sbjct: 210 IVNRWKQMG 218 >gi|212715911|ref|ZP_03324039.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM 16992] gi|212661278|gb|EEB21853.1| hypothetical protein BIFCAT_00820 [Bifidobacterium catenulatum DSM 16992] Length = 196 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 9/170 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IV D ETTGL K R+IEIGAV++ + + F + P L GI D Sbjct: 22 FIVIDTETTGLSVRKGARLIEIGAVKIHNDELVDE-FDQLINPFEH-IPSRITGLTGIDD 79 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINA--ELQRINKDPLDPSRIID 125 L KP + EF + ++ A +AHNA FD+ F++ +L ++D +D Sbjct: 80 GMLLGKPDVREVMDEFARWCSDT-AVVMAHNASFDMSFLDNAVQLAYADRDARFAHHFVD 138 Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 TL ++RR HP R + +++L Y I + +H AL D+ +Y M Sbjct: 139 TLDLSRRLHPEKRTHKVSTLIVDYHI--ADMEEHRALSDAKQEWMLYRAM 186 >gi|326568596|gb|EGE18667.1| ribonuclease T [Moraxella catarrhalis BC7] Length = 232 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 82/221 (37%), Gaps = 24/221 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++ D ++EI V + + P +G P Sbjct: 15 RFRGFLPVVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEP 74 Query: 58 EALKLHGIT-DEFLKDKPSFSS--IFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 ALK GI D + S + + + HNA FD+GF+N Sbjct: 75 AALKFTGINPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLN 134 Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R N P ++DT+S A + L C GI ++ H AL D+ Sbjct: 135 AAIARTNSKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGIEFDNQHAHSALYDA 192 Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL 205 ++++ ++ N TN + + T P+ + Sbjct: 193 QKTAELFCHIVNQ----NTLLSTNHANLTQNDTPTSPHQTP 229 >gi|104773929|ref|YP_618909.1| hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423010|emb|CAI97696.1| Hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 290 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 13/169 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGL+++ D+I+ IGAV+ F + + ++L GIT E Sbjct: 126 FVAVDIETTGLNTETDQILSIGAVKHD-----GTEFYRLIK-QDIDVPKQIVELTGITSE 179 Query: 69 FL-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L K+ E DF N + +N +FD F+N + ++ L + I D L Sbjct: 180 MLSKEGVPLQDALEELTDFVG--NVPIVGYNFRFDSAFLNRDYRKCGMQEL-KNEIKDLL 236 Query: 128 SIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +RK L ++ YGI ++ H A+ D+ ++ +K++ Sbjct: 237 PVVKRKEKFLDNYKLQTVLSNYGIE--NKVPHNAVSDARATKELAMKLI 283 >gi|73662206|ref|YP_300987.1| exonuclease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494721|dbj|BAE18042.1| putative exonuclease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 184 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D ET + K I +G V+++++ T +F + PN S + + +H I E Sbjct: 6 FIALDFETA--NGKRTSICAVGMVKVVNHQIT-ESFYTLVNPNDY-FSQQNIAVHSIHPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P+F +++ F + +AHNA FD+ ++ + D +L Sbjct: 62 QVEDAPTFQTVYPYMLQFIG--DLPVVAHNAAFDMNVLHESISAFGFDT-PNMTYFCSLQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 ++RR + R LN + + Y + H AL D+ + + +++ Sbjct: 119 LSRRTVENHRYGLNYMMQYYNLDF--HGHHDALNDAKACAMITFRLL 163 >gi|323699453|ref|ZP_08111365.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio sp. ND132] gi|323459385|gb|EGB15250.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio desulfuricans ND132] Length = 178 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 8/170 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + +R + D ET D K D +G V ++D + + P + +P + Sbjct: 1 MPTLDDVRFVAIDFETA--DPKRDSACALGIV-VVDRGEIVARDYRLIRPPRARFNPFCV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI E + ++PSF ++ E F + +AHNA FD ++ + Sbjct: 58 RVHGIHWEDVCNEPSFGDLWPELEVHFRGAD-FLVAHNAAFDKSVLHTCCKESGW-TAPE 115 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + T+ +AR+ S N L ++C+ GI ++H H A D+ + + Sbjct: 116 QPFLCTVQLARKTWELSCNKLPNVCEYLGIELNH---HNAASDAEACALI 162 >gi|225352024|ref|ZP_03743047.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157271|gb|EEG70610.1| hypothetical protein BIFPSEUDO_03631 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 196 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 9/170 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 IV D ETTGL K ++IEIGAV++ + + F + P L GI D Sbjct: 22 YIVIDTETTGLSVRKGAKLIEIGAVKIRNDELVDE-FDQLINPFEH-VPSRITGLTGIDD 79 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN--KDPLDPSRIID 125 L KP + EF + ++ A +AHNA FD+ F++ +Q +D +D Sbjct: 80 GMLLGKPDVREVMDEFARWCSDT-AVVMAHNASFDMSFLDNAVQLAYSERDARFAHHFVD 138 Query: 126 TLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 TL ++RR HP R + +++L Y I + +H AL D+ +Y M Sbjct: 139 TLDLSRRLHPEKRSHKVSTLIVDYHI--ADMEEHRALSDARQEWMLYRAM 186 >gi|21673865|ref|NP_661930.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS] gi|21647000|gb|AAM72272.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS] Length = 232 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 18/193 (9%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEAL 60 +++R ++FD ET+G D DRI+ IGAV + + +F+V L +A+ Sbjct: 38 TPLDELRFVIFDTETSGFDLVKDRILSIGAVSMKGSTIDIADSFEVLLRQE-AIGGKDAV 96 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL-QRINKDPLD 119 +HGI L F D+ N +AH+A FD+ +N L QR L Sbjct: 97 SVHGILKRDLTQGMEEGEAVCRFLDYLG--NGVIVAHHADFDIAMVNRVLSQRYGIKLL- 153 Query: 120 PSRIIDTLSIARRK---------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDV 170 + +DT S A+R H S L++LC RYGI + R H + D++L + + Sbjct: 154 -NEALDTASFAKRLEKGPYYNLAHKSGEYRLDNLCARYGICLYDR--HTSAGDAYLTAQL 210 Query: 171 YIKMMVGGSQINF 183 + +++ G + Sbjct: 211 FQRLLAVGRKAGI 223 >gi|282880819|ref|ZP_06289515.1| DNA polymerase III subunit epsilon domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305353|gb|EFA97417.1| DNA polymerase III subunit epsilon domain protein [Prevotella timonensis CRIS 5C-B1] Length = 183 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 9/168 (5%) Query: 7 MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 + I D ET TG K + E G + D K T + P S +++HGI Sbjct: 4 LNFIAIDFETATG---KRASVCEAGICVVKDG-KIVETKSWLIRPEDNAYSYWNIQIHGI 59 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 E ++ PSF ++ E + E +AHNA FD+ I L+ + D LD Sbjct: 60 HPEDTENAPSFPCVWQEILTYLKETP-ILVAHNAAFDISCIRKSLELYHLDTLDVD-YYC 117 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 TL AR + + L LC+++ I + H A D+ + + ++++ Sbjct: 118 TLRAARHHYDFECHTLGYLCEQFEIP--EGTHHRAGDDAEMCARLFLR 163 >gi|78777804|ref|YP_394119.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM 1251] gi|78498344|gb|ABB44884.1| Exonuclease [Sulfurimonas denitrificans DSM 1251] Length = 266 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 12/192 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIET G + +IIEI A+++ + R F+ + + +P ++ GI+ Sbjct: 71 FCIVDIETNGSKIEKHQIIEIAALKVKNGLVVER-FESLV--ECHEINPHITEITGISTN 127 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 D P+ + +F F +A +IAH+ KFD FI+ +Q+I PL +R + +LS Sbjct: 128 ETIDAPNLKKVMYDFRTFLG--DAVFIAHDVKFDYKFISLSMQKIGLPPLL-NRSLCSLS 184 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTN 188 +A R S R L+ L + + + H A+ D +++ + + ++ KT Sbjct: 185 LAERTIESYRYALSYLNTIFNLHPEA-THHRAMSDVITTYELFK---LSLNSVDKEVKTV 240 Query: 189 ED--RFFKEEKK 198 ED RF KE K+ Sbjct: 241 EDLIRFSKEAKR 252 >gi|146281584|ref|YP_001171737.1| ribonuclease T [Pseudomonas stutzeri A1501] gi|145569789|gb|ABP78895.1| ribonuclease T [Pseudomonas stutzeri A1501] Length = 203 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCPN-GRKNSP 57 R +V D+E G + D ++EI AV + + T + P G P Sbjct: 4 RFRGFLPVVIDVECGGFNCATDALLEIAAVTIGMDEQGLLYPQDTLFYRVEPFAGANIEP 63 Query: 58 EALKLHGI-TDEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109 AL+ GI D L+ ++ + + A + HN+ FD+GF+NA Sbjct: 64 AALEFTGIKLDHPLRMAVPEQQALTDIFRSVRKAVKSAGCKRAILVGHNSSFDLGFLNAA 123 Query: 110 LQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + R ++P P DT ++A + + L C+ GI R H A D+ Sbjct: 124 IARCEIKRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKT 181 Query: 168 SDVYIKMMVGGSQIN 182 ++++ ++ ++ Sbjct: 182 AELFCGIVNRWKEMG 196 >gi|148925831|ref|ZP_01809518.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8486] gi|145844817|gb|EDK21921.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8486] Length = 256 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 7/147 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE+TG I+EIGAV++ + + R FQ F+ ++ +L GIT E Sbjct: 72 FCIVDIESTG-SVSKGEILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYE 127 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ PS + + S+F F +++ ++AHN +FD FI+ L L +R I T+ Sbjct: 128 MVENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 184 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155 A+ S + L L + G+ +H Sbjct: 185 FAQCCIESPKYKLEVLKEFLGVENTHH 211 >gi|300087648|ref|YP_003758170.1| DNA polymerase III subunit epsilon [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527381|gb|ADJ25849.1| DNA polymerase III, epsilon subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 260 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 13/181 (7%) Query: 1 MIRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA 59 M R + FD+ETTGL+ DRI+EI V+LL T + + P G A Sbjct: 1 MNNLKLDRPLVFFDLETTGLNPLKDRIVEITLVKLLPDG-TEESRSRLIDP-GIPIPETA 58 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118 +HGITD+ + +PSF+ I F DF + + N KFD+ + AE +R D Sbjct: 59 TAIHGITDDRVAGQPSFNRIAKSFRDFL--EGCDLCGFNIKKFDIPMLEAEFRRAGVDFS 116 Query: 119 DPSRI-IDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMV 176 R IDT I + HP L + Y G +++ H + D+ +++ + Sbjct: 117 RAGRRIIDTQVIFHKFHPRG---LEAAYSLYCGKQLAN--LHSSDADARACAEILSAQLA 171 Query: 177 G 177 Sbjct: 172 A 172 >gi|205352416|ref|YP_002226217.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856601|ref|YP_002243252.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272197|emb|CAR37055.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708404|emb|CAR32708.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627468|gb|EGE33811.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 232 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 23/169 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + P P I T+ ++ Sbjct: 59 ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176 RR P + SL K +++ H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMSLYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 152 >gi|146328835|ref|YP_001209227.1| ribonuclease T [Dichelobacter nodosus VCS1703A] gi|146232305|gb|ABQ13283.1| ribonuclease T [Dichelobacter nodosus VCS1703A] Length = 206 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 19/189 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G D + D ++E+ AV TF + P G +P Sbjct: 8 RFRGFLPVVVDVETGGFDHEKDALLEVAAVLVNFNEAGNLAPVETFHYHVKPFEGAHLNP 67 Query: 58 EALKLHGITDEFLKDKPSFSSI------FSEFWDFFNEQNA---EWIAHNAKFDVGFINA 108 ++LK++GI D F +P+ + F ++ Q+ + HNA FD+GFINA Sbjct: 68 DSLKINGI-DPFHPLRPALDEVTVAKQLFGAIREYQKAQSCTRSILVGHNAHFDLGFINA 126 Query: 109 ELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 R N +P P +DT+S+ + + L + K G HGA D+ L Sbjct: 127 LAARCNYQHNPFHPFSSLDTVSLGALAY--GQTVLARIAKAAGFEYDSERAHGAKYDTEL 184 Query: 167 LSDVYIKMM 175 + ++ ++ Sbjct: 185 TAQIFCHII 193 >gi|301026596|ref|ZP_07190019.1| exonuclease [Escherichia coli MS 69-1] gi|300395429|gb|EFJ78967.1| exonuclease [Escherichia coli MS 69-1] Length = 220 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I++I +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVDIASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEDVIPH---YYGSE--WYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|168238504|ref|ZP_02663562.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735808|ref|YP_002114913.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930999|ref|ZP_03221825.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194711310|gb|ACF90531.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288686|gb|EDY28061.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320043|gb|EDZ05248.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322616877|gb|EFY13785.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618116|gb|EFY15008.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625787|gb|EFY22606.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626239|gb|EFY23049.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632652|gb|EFY29397.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638997|gb|EFY35690.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640437|gb|EFY37090.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644201|gb|EFY40746.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649525|gb|EFY45957.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655432|gb|EFY51740.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660811|gb|EFY57042.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662892|gb|EFY59099.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668077|gb|EFY64236.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674164|gb|EFY70258.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675483|gb|EFY71557.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683103|gb|EFY79119.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686797|gb|EFY82775.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195312|gb|EFZ80492.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199204|gb|EFZ84299.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202983|gb|EFZ88016.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207461|gb|EFZ92409.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213958|gb|EFZ98726.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217444|gb|EGA02163.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219962|gb|EGA04435.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231467|gb|EGA15580.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235907|gb|EGA19986.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240478|gb|EGA24521.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245369|gb|EGA29369.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246734|gb|EGA30706.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253590|gb|EGA37418.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255358|gb|EGA39128.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260250|gb|EGA43871.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266842|gb|EGA50328.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269048|gb|EGA52504.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 232 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + P P I T+ ++ Sbjct: 59 ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176 RR P + +L K +++ H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 152 >gi|325297417|ref|YP_004257334.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] gi|324316970|gb|ADY34861.1| Exonuclease RNase T and DNA polymerase III [Bacteroides salanitronis DSM 18170] Length = 183 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 7/172 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I D ET K I E G + + K T + P G S +++HGI Sbjct: 6 FIAIDFETA--TRKRASICEAGICVVRNG-KVAETRSWLIRPEGNYYSYWNMQIHGIRPS 62 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F I+++ ++ E +AHNA FD+G I LQ + D +L Sbjct: 63 DTENAPEFPEIWTKITEYLGECP-VLVAHNAIFDIGCIRHSLQFYHIKKPDI-TYYCSLR 120 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 AR+ + N L+ LC ++ I R H A D+ + + ++++ + ++ Sbjct: 121 AARKLYNFDCNKLDYLCDQFEIPY--RLHHRAGDDAEMCARLFLREIRDAAK 170 >gi|323467153|gb|ADX70840.1| DNA polymerase III [Lactobacillus helveticus H10] Length = 317 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 6/164 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGL DRI E+G V++ + ++ + P K KL+GIT+E Sbjct: 33 YTMLDIETTGLSPFRDRITELGGVKVRNGQIVDQYTNLVKFPKNNKVPAFITKLNGITEE 92 Query: 69 FLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L + EF +F + I +N FD+ F+ Q+ N P+ + +D L Sbjct: 93 QLTNEGIPAEQAIKEFREFIGDD--TIIGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVL 149 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +A+ +P N L +R GI + +H L DS VY Sbjct: 150 RLAKVYYPRQHNRLIDCMQRAGI--AQVEQHHGLADSLDTIKVY 191 >gi|322385196|ref|ZP_08058843.1| DNA polymerase III [Streptococcus cristatus ATCC 51100] gi|321270820|gb|EFX53733.1| DNA polymerase III [Streptococcus cristatus ATCC 51100] Length = 814 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 88/186 (47%), Gaps = 11/186 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M + N + V D+E T + ++ I + +++ +T++ + P+ Sbjct: 1 MAQSN-YKYAVIDLEAT--SASSNAKIIQIGIVIIENGVICQTYETDVNPH-EDLDEHIK 56 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +L G+ D+ L+ P FS + E ++ ++A ++AHN KFD + L D L P Sbjct: 57 QLTGLDDQRLRQAPDFSQVAREVYELI--EDAIFVAHNVKFDANLLAEALFWEGFDLLTP 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 +DT+ +A+ +P+ + L +LC+ I + + H AL D+ + +++K+ + Sbjct: 115 --RVDTVELAQVFYPTFDKYALGNLCELLEIPLEN--AHTALADAQATAQLFLKIQKKMA 170 Query: 180 QINFGF 185 ++ Sbjct: 171 RLPKAL 176 >gi|257454452|ref|ZP_05619714.1| ribonuclease T [Enhydrobacter aerosaccus SK60] gi|257448218|gb|EEV23199.1| ribonuclease T [Enhydrobacter aerosaccus SK60] Length = 242 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 86/234 (36%), Gaps = 25/234 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NG 52 M N+ R +V D+ET G + K D ++EI + +L + P G Sbjct: 8 MTIANRFRNYLPVVVDVETAGFNPKTDALLEIACIPILMDDTGLFYPGEAVNAHIEPFEG 67 Query: 53 RKNSPEALKLHGITDE--FLKD-KPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFD 102 AL+ GI K + + + + HNA FD Sbjct: 68 ANLEARALQFTGINPHSPMRKAIAEDEKTAIRRIFKYLKTVRQSTQCTKCILVGHNAHFD 127 Query: 103 VGFINAELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 + F+NA ++R N + ++DT++++ + L CK G+ H Sbjct: 128 LSFLNALIERTNSKNQSQFHQFSVLDTVTLSALAF--GQTVLARACKLAGLEFDGNEAHS 185 Query: 160 ALLDSHLLSDVYIKMMVGGSQI--NFGFKTNEDRFFKEEKKTVPNISLLKRDKP 211 AL D+ ++++ ++ + N +D + E + + L+ D P Sbjct: 186 ALYDTQKTAELFCYILNNYPMLTPNLASDEAKDEEYDEPQDSDDEAILVPSDDP 239 >gi|217032955|ref|ZP_03438429.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128] gi|216945324|gb|EEC23998.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128] Length = 287 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 8/161 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 75 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R S R L+ L + G I H A D+ ++ Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLF 227 >gi|262041960|ref|ZP_06015142.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040658|gb|EEW41747.1| exodeoxyribonuclease 10 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 219 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D TN + P+ R SP+A+ +H IT+E + Sbjct: 4 VIDTETCGLQGG---IVEIASVDIVDGQITNPMSH-LVRPD-RPISPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + + ++AHNA FD + P I T+ +A Sbjct: 59 ADKPWIEEIIPHYH-----GSRWYVAHNASFDRRVL----------PEMHGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + L K + + H AL D ++ + + + ++ Sbjct: 104 RRLWPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLLDII 151 >gi|27468497|ref|NP_765134.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis ATCC 12228] gi|57867358|ref|YP_189001.1| exonuclease [Staphylococcus epidermidis RP62A] gi|251809901|ref|ZP_04824374.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis BCM-HMP0060] gi|282874556|ref|ZP_06283441.1| exonuclease [Staphylococcus epidermidis SK135] gi|293367792|ref|ZP_06614441.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W2(grey)] gi|27316044|gb|AAO05178.1|AE016749_124 DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis ATCC 12228] gi|57638016|gb|AAW54804.1| exonuclease [Staphylococcus epidermidis RP62A] gi|251806566|gb|EES59223.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis BCM-HMP0060] gi|281296695|gb|EFA89204.1| exonuclease [Staphylococcus epidermidis SK135] gi|291318131|gb|EFE58528.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis M23864:W2(grey)] gi|329726906|gb|EGG63364.1| exonuclease [Staphylococcus epidermidis VCU144] gi|329734711|gb|EGG71017.1| exonuclease [Staphylococcus epidermidis VCU045] gi|329734804|gb|EGG71109.1| exonuclease [Staphylococcus epidermidis VCU028] Length = 184 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET +SK I +G V+++D T +F + P +HGI E Sbjct: 6 FVALDFETA--NSKRTSICSVGMVKVIDNQIT-ESFHTLVNPFDYFTETNIT-VHGIHPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F ++ F ++ +AHNA FD+ ++ L+ N D + Sbjct: 62 DVQDAPGFKHVYPYMLKFIDQ--LPVVAHNAAFDMNVLHQSLKSHNIDT-PSLTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+R + R L L Y + H AL D+ + + +++ Sbjct: 119 LAKRTINAYRYGLKHLMNHYHLDF--HGHHDALNDAKACAMITYRLL 163 >gi|161613571|ref|YP_001587536.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|198244129|ref|YP_002215209.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|161362935|gb|ABX66703.1| hypothetical protein SPAB_01291 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197938645|gb|ACH75978.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622957|gb|EGE29302.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 232 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + P P I T+ ++ Sbjct: 59 ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176 RR P + +L K +++ H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHYHRALYDCYITAALLIDIMR 152 >gi|317048499|ref|YP_004116147.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b] gi|316950116|gb|ADU69591.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b] Length = 222 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 28/241 (11%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V+++D N +CP+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGLQGG---VVEVASVDVIDGQILN-PMSDLICPD-RPISHQAMAVHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP+ + + ++AHNA FD + P P + I T+++A Sbjct: 59 ADKPTIEQAIGRYH-----GSPHYVAHNASFDRRML----------PEMPGQWICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 R+ P + +L + ++ H AL D ++ + + I++M S N Sbjct: 104 RQLWPGQKYGNQALRHSLKLDVTPPADLHAHRALYDCYVTAALLIRIMEK-SGWNAEQMV 162 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLG---KNAIWDRYISSN 244 + + P + R L + ++ L + A+ +Y+ S+ Sbjct: 163 SRCQPAPVADDVFPFGKYRGQSIGSIARKDPGYLRWVLENVRDLRPPLRQAL-RKYVKSD 221 Query: 245 Q 245 Q Sbjct: 222 Q 222 >gi|254516595|ref|ZP_05128654.1| ribonuclease T [gamma proteobacterium NOR5-3] gi|219675018|gb|EED31385.1| ribonuclease T [gamma proteobacterium NOR5-3] Length = 209 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 20/200 (10%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGA--VELLD--YSKTNRTFQVFLCP-NG 52 M K++ R ++ D+ET G S D I+E+ A + + D + + T + P G Sbjct: 1 MAMKSRFRGFLPVIIDMETGGFSSSTDAILELAATIIRMDDSGHVAVHETHSFNVAPFEG 60 Query: 53 RKNSPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVG 104 AL GI E +K + + +F +Q A + HNA FD G Sbjct: 61 ANIEQSALDFTGIDPWHPFREAHSEKDALAELFQVVRREIRDQECNRAILVGHNAHFDAG 120 Query: 105 FINAELQRI--NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALL 162 F+NA ++R ++P P DT +++ + + L C GI + H A Sbjct: 121 FLNAAVERCEIKRNPFHPFSHFDTATLSGLAY--GQTVLAKSCLEAGIPFDNEQAHSAAY 178 Query: 163 DSHLLSDVYIKMMVGGSQIN 182 D+ ++++ ++ + Sbjct: 179 DAERTAELFCSIVNRWQMLG 198 >gi|303235494|ref|ZP_07322106.1| exonuclease [Prevotella disiens FB035-09AN] gi|302484293|gb|EFL47276.1| exonuclease [Prevotella disiens FB035-09AN] Length = 183 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 12/194 (6%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 + + I D ET + I E G + ++ K T + P G + ++H Sbjct: 1 MHDINFIAIDFETA--SNAQAAICEAG-ISIVKGGKVVETRSWLVRPEGNAYNYWNTRVH 57 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + P F +++E + + +AHNA FD+G I L Sbjct: 58 GITAKDTAHAPEFPQVWNEIMTYLADCP-ILVAHNAGFDMGCIRRSLAFYGLKT-PEITY 115 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +L AR+ + N L LC+++ I H A D+ + + ++++ + +F Sbjct: 116 YCSLRAARKIYDFECNKLEFLCQKFEIPY--GQHHRAGDDAAMCAHLFLRELK-----DF 168 Query: 184 GFKTNEDRFFKEEK 197 G+ + F E K Sbjct: 169 GWADLSEMHFCEGK 182 >gi|288554371|ref|YP_003426306.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4] gi|288545531|gb|ADC49414.1| hypothetical protein BpOF4_06780 [Bacillus pseudofirmus OF4] Length = 220 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 7/178 (3%) Query: 2 IRKNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + +FD ETTG DR+IEI V + +TFQ F+ P+ R+ + Sbjct: 21 THIRDLTFTIFDTETTGFAINGADRMIEIAGVRVAGLEVQEQTFQTFVNPD-REIPEKIT 79 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLD 119 L GI+ E +KD PS F+ F + +++ + H FD+ + EL R Sbjct: 80 SLTGISGEKVKDAPSSLEALERFFQFNEDIDSKLWVGHYVSFDMMVVKKELLRHKYTYDT 139 Query: 120 PSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 P ++DTL + +PS DL ++G + R H AL D+ + ++ ++M Sbjct: 140 P-LVVDTLDLIGYLNPSRDMRDLEVYALQFGTLVYER--HQALGDAMTTAHLFCELMR 194 >gi|228473352|ref|ZP_04058106.1| exonuclease [Capnocytophaga gingivalis ATCC 33624] gi|228275254|gb|EEK14052.1| exonuclease [Capnocytophaga gingivalis ATCC 33624] Length = 164 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + + IG V + + + T+ + P SP ++HG++ Sbjct: 4 FVALDFETA--NQYRSSVCSIGLVFVENNEIVD-TYYQLIKPAPNYYSPFCTQVHGLSQY 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P F ++ E ++ +AHN+ FD G + L P + TL Sbjct: 61 DTEKAPLFPEVWKEILPKI--KDLPLVAHNSMFDEGCLREVLA-YYALPQHTNPFFCTLR 117 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 AR+ P + L+++ +G + + H AL D+ + + +++ Sbjct: 118 AARKSLPQLVNHKLDTVSAYFGFDL--KQHHHALADAEACAHIALEL 162 >gi|295693033|ref|YP_003601643.1| ATP-dependent DNA helicase ding [Lactobacillus crispatus ST1] gi|295031139|emb|CBL50618.1| ATP-dependent DNA helicase DinG [Lactobacillus crispatus ST1] Length = 926 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 9/171 (5%) Query: 6 KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L G Sbjct: 7 KDTFAVVDLETTGTQRENGHHIIQFGC-AIIKNLKVVKTYSFLINPH-REIPQSVVNLTG 64 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I D+ + + F + QN ++AHN FD+ F+N EL + + L ++ I Sbjct: 65 IHDQDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 DT+ +A+ P+ L+ L + GI H H A D++ + + +++ Sbjct: 122 DTVELAKIAFPTFPSYKLSDLTTQLGIK--HLDPHKADSDAYGTAVLLLEI 170 >gi|78777649|ref|YP_393964.1| DNA polymerase III subunit epsilon [Sulfurimonas denitrificans DSM 1251] gi|78498189|gb|ABB44729.1| Exonuclease [Sulfurimonas denitrificans DSM 1251] Length = 205 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 9/172 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD ETTGL+ K D I+ IGAV++ D T++TF+VFL N ++ S ++K+HGI Sbjct: 34 YVVFDTETTGLNPKVDEILSIGAVKIKDNRVLTSQTFEVFL-QNSKEISSNSIKIHGIRP 92 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 LKD + EF +F + I + +FDV IN + + L P+++I+ Sbjct: 93 FDLKDAKTTKEGIVEFLNFIGSR--PLIGYYLEFDVAMINRYTKPLLGINL-PNKMIEVS 149 Query: 128 SIARR----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 I P DL +I + H A+ D+ + + +Y+K+ Sbjct: 150 EIYFDKTISLIPQGNIDLRFDTILKNCSIPNMGAHNAVNDAIMTAMIYLKLT 201 >gi|298528189|ref|ZP_07015593.1| DNA polymerase III, epsilon subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298511841|gb|EFI35743.1| DNA polymerase III, epsilon subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 249 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 16/183 (8%) Query: 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLH 63 N+ +V D E TGL+ K D I+ IGA+ + + F R +++ +H Sbjct: 47 LNEYDFVVLDTELTGLNVKKDEIVTIGALRISEMRIDMEQSFYFCACPTRDVPKQSIVIH 106 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GIT + P DF N+ + HN D+ IN EL++ L + Sbjct: 107 GITPSEAQKAPPLKEALQGLLDFCG--NSIIVGHNINLDISVINRELKKEFGGELH-NPC 163 Query: 124 IDTLSIARRK-----------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 IDT+ +AR+ + +L L + +G+ + ++H A D+ + ++I Sbjct: 164 IDTMRLARQYREGQWTGAYECYEEYSYNLRKLSREFGLPL--FTEHNAFTDALQTAYLFI 221 Query: 173 KMM 175 ++ Sbjct: 222 YLV 224 >gi|317133746|ref|YP_004089657.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] gi|315450208|gb|ADU23771.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7] Length = 284 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 11/180 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCPNGRKNS 56 M R + V D+ETTG +K+ + + ++ + K + VF+ P + Sbjct: 17 MARA-GIPICVIDLETTGRSAKDSYVFQFAGLKCIIDKSLTPKIIESLCVFIKPE-VPLN 74 Query: 57 PEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKD 116 ++ G T+E LKDK ++F F + N +HN F+ F+NA R N Sbjct: 75 ERITEITGFTNEDLKDKADEETVFPRIKKFMD--NCIMCSHNTAFEESFMNAMYAR-NGC 131 Query: 117 PLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 P+ IIDTL ++R H + + L + +RYGI H A D+ + + + + Sbjct: 132 VFKPAEIIDTLKMSRDLHKEEKSHKLGVIAERYGIA-DGVKFHDARDDTIICGRLLSRFL 190 >gi|227894158|ref|ZP_04011963.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047] gi|227864030|gb|EEJ71451.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047] Length = 318 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 7/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGL DRI E+GAV++ + ++ + P K KL+GIT+E Sbjct: 33 YTMLDIETTGLSPYRDRITELGAVKVRNNQIVDQYTNLVKFPKNNKVPAFITKLNGITEE 92 Query: 69 F-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + EF +F + I +N FD+ F+ Q+ N P+ + +D L Sbjct: 93 QIVNEGIPAEQAIKEFREFIGDD--PIIGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVL 149 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +AR +P R++ L +R GI + +H L DS VY Sbjct: 150 RLARAYYPRERHNRLIDCMQRAGI--AQVEQHHGLADSLDTIKVY 192 >gi|121997525|ref|YP_001002312.1| ribonuclease T [Halorhodospira halophila SL1] gi|121588930|gb|ABM61510.1| RNAse T [Halorhodospira halophila SL1] Length = 226 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 18/190 (9%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF----QV-FLCP-NGRKN 55 R +V D+ET GL ++ D +++I AV L T R + + P G + Sbjct: 26 TRFRAFLPVVVDVETGGLQAETDALLQIAAVILRAEEGTGRLYPAETHTCHVQPFEGARI 85 Query: 56 SPEALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFIN 107 P+AL+L+GI E L+ + ++ ++ A + HNA FD+ F+N Sbjct: 86 DPKALELNGIDPEHPLRMAVPERDALGKMFNPVRQELRNTGCNRAVLVGHNAFFDLAFLN 145 Query: 108 AELQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A + R ++P P DT ++ + + L K GI + H A+ D+ Sbjct: 146 AAVTRTGFKRNPFHPFSSFDTATLGGLAY--GQTVLAKAVKAAGIEWDAKEAHSAIYDAE 203 Query: 166 LLSDVYIKMM 175 ++++ ++ Sbjct: 204 KTAELFCAIV 213 >gi|170718052|ref|YP_001785090.1| ribonuclease T [Haemophilus somnus 2336] gi|168826181|gb|ACA31552.1| ribonuclease T [Haemophilus somnus 2336] Length = 218 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 20/199 (10%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGR 53 + KN+ R ++ D+ET G +++ D ++E+ A+ L + + P G Sbjct: 13 LLKNRFRGFFPVIIDVETAGFNAQTDALLELAALTLKMDENGLLVPDEKCHFHIQPFEGA 72 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGF 105 +PE+LK +GI D L+ S + SE + + Q + +AHNA FD F Sbjct: 73 NINPESLKFNGIDIDNPLRGAISENVAMSELFKMVRHGQKKADCQRSVIVAHNATFDQSF 132 Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A +R I ++P P I DT +++ + L C+ I+ + H AL D Sbjct: 133 VMAAAERTKIKRNPFHPFSIFDTATLSGFMF--GQTVLVKGCQVANISFDGKKAHSALYD 190 Query: 164 SHLLSDVYIKMMVGGSQIN 182 + ++++ M+ ++ Sbjct: 191 AERTAELFCYMVNHLKKLG 209 >gi|282878677|ref|ZP_06287446.1| exonuclease [Prevotella buccalis ATCC 35310] gi|281299222|gb|EFA91622.1| exonuclease [Prevotella buccalis ATCC 35310] Length = 284 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 9/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K IVFD+ETTGLD DRII+I +++ K R + + P + E Sbjct: 1 MKLNLKKPIIVFDLETTGLDLVKDRIIQISYIKVFPDGKEERE-NILVNPE-KNIPLEVS 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119 L GIT+E + D P F I + + F + ++ +N FD+ + E R D Sbjct: 59 ALTGITNEDVADAPKFQDIAQKLAEEF--KGCDFAGYNSNHFDIPILAEEFLRAGIDFDF 116 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI 172 + + H R +L + K Y G + H A D+ + V + Sbjct: 117 SKSNL--VDAQAIFHKMERRNLAAAYKFYCGRKMEDDFEAHRADQDAEVTYRVLM 169 >gi|242241732|ref|ZP_04796177.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144] gi|242234822|gb|EES37133.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144] Length = 184 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V+++D T +F + P + + +HGI E Sbjct: 6 FVALDFETA--NGKRTSICSVGMVKVIDNQIT-ESFHTLVNPFDY-FTETNINVHGIHPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F ++ F ++ +AHNA FD+ ++ L+ +N D + Sbjct: 62 DVQDAPGFKHVYPYMLQFIDQ--LPVVAHNAAFDMNVLHQSLKSLNIDT-PSLTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+R + R L L Y + H AL D+ + + +++ Sbjct: 119 LAKRTINAYRYGLKHLMNHYHLDF--HGHHDALNDAKACAMITYRLL 163 >gi|326789827|ref|YP_004307648.1| exonuclease RNase T and DNA polymerase III [Clostridium lentocellum DSM 5427] gi|326540591|gb|ADZ82450.1| Exonuclease RNase T and DNA polymerase III [Clostridium lentocellum DSM 5427] Length = 305 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 77/178 (43%), Gaps = 11/178 (6%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M +V D ET +S +G V++ + + + +F + P L GIT Sbjct: 1 MNYVVIDFETA--NSSRSSACSLGMVKVHEGNIVD-SFYSLINPED-DFDLFNTSLTGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P+F+ ++ + F ++ +AH A FD+ + L + N P+ T Sbjct: 57 QDMVCNSPTFNELWPDILSFISDHM--IVAHYASFDLSVLRNVLLKYNI-PIPTLSYCCT 113 Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 +++++ P+ L+++ I +H H A D+H + + + + + +F Sbjct: 114 RNLSKKTFPNLINYRLDTVASYLDIEFNH---HHAFEDAHATAVLLNHIFIQNTTSSF 168 >gi|332291593|ref|YP_004430202.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332169679|gb|AEE18934.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 232 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 15/181 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALK 61 + + R +VFD ETTGL K DRI+ IGAV +++ ++ +++L + K PE+ K Sbjct: 41 KLHTTRFVVFDTETTGLHYKEDRILSIGAVTVINNEISIAQSLELYLKQDIYK--PESAK 98 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 +HGI ++ + + +F I H+ FDV IN+ L+R L + Sbjct: 99 IHGILRNGSYEQVNEQEAIEKCLEFIGTD--ILIGHHIGFDVAVINSALKRAQLGKL-KN 155 Query: 122 RIIDTLSIARRK-HP------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 R++DT ++ +R HP R L+ L + I + R H + D+ + + +IK+ Sbjct: 156 RVLDTETLYKRLVHPINRPLQEKRYTLDELAEALKIPLHDR--HTSAGDALITAIAFIKI 213 Query: 175 M 175 + Sbjct: 214 V 214 >gi|261838819|gb|ACX98585.1| DNA polymerase III epsilon subunit [Helicobacter pylori 51] Length = 323 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 168 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 224 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G I H A D+ ++ ++ I+ Sbjct: 225 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 282 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + ++T+ L +R K L I Sbjct: 283 FSKCANTLIKRPPRARHQETLVPFPLFERTKGLLNII 319 >gi|206603443|gb|EDZ39923.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II '5-way CG'] Length = 265 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 9/172 (5%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M+ D+ETTGL RIIE+G + + + + K++GI Sbjct: 1 MKITFLDVETTGLLRDSRARIIELGFSTWENGKLLRKN-STLIK-SVDVVPDNISKINGI 58 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T E LKD P F ++ + + Q + +AHN FDVG +N EL N+ PL + ID Sbjct: 59 TTEMLKDAPGFEDVWKSIKE--DFQGSILVAHNLAFDVGMVNRELILANRIPLG-NMGID 115 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 TL ++R+ P S L + K GI S H A+ D L + ++ Sbjct: 116 TLPLSRKMLPELSSYRLGEIAKHMGILNE--SPHRAMGDLETLEKILSNLLE 165 >gi|256843260|ref|ZP_05548748.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 125-2-CHN] gi|256614680|gb|EEU19881.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 125-2-CHN] Length = 926 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 9/171 (5%) Query: 6 KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L G Sbjct: 7 KDTFAVVDLETTGTQRENGHHIIQFGC-AIIKNLKVVKTYSFLINPH-REIPQSVVNLTG 64 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I D+ + + F + QN ++AHN FD+ F+N EL + + L ++ I Sbjct: 65 IHDQDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 DT+ +A+ P+ L+ L + GI H H A D++ + + +++ Sbjct: 122 DTVELAKIAFPTFPSYKLSDLTTQLGIK--HLDPHKADSDAYGTAVLLLEI 170 >gi|227878664|ref|ZP_03996579.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01] gi|256850383|ref|ZP_05555811.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US] gi|262046469|ref|ZP_06019431.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus MV-3A-US] gi|227861728|gb|EEJ69332.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01] gi|256712780|gb|EEU27773.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US] gi|260573340|gb|EEX29898.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus MV-3A-US] Length = 926 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 9/171 (5%) Query: 6 KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L G Sbjct: 7 KDTFAVVDLETTGTQRENGHHIIQFGC-AIIKNLKVVKTYSFLINPH-REIPQSVVNLTG 64 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I D+ + + F + QN ++AHN FD+ F+N EL + + L ++ I Sbjct: 65 IHDQDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 DT+ +A+ P+ L+ L + GI H H A D++ + + +++ Sbjct: 122 DTVELAKIAFPTFPSYKLSDLTTQLGIK--HLDPHKADSDAYGTAVLLLEI 170 >gi|161507964|ref|YP_001577928.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348953|gb|ABX27627.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 317 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 6/164 (3%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D+ETTGL DRI E+G V++ + ++ + P K KL+GIT+E Sbjct: 33 YTMLDVETTGLSPFRDRITELGGVKVRNGQIVDQYTNLVKFPKNNKVPAFITKLNGITEE 92 Query: 69 FLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + EF +F + I +N FD+ F+ Q+ N P+ + +D L Sbjct: 93 QITNEGIPAEQAIKEFREFIGDD--TIIGYNVNFDLNFLYDLSQKYNL-PVLNNDYVDVL 149 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +AR +P N L +R GI + +H L DS VY Sbjct: 150 RLARVYYPRQHNRLIDCMQRAGI--AQVEQHHGLADSLDTIKVY 191 >gi|307564574|ref|ZP_07627114.1| exonuclease [Prevotella amnii CRIS 21A-A] gi|307346732|gb|EFN92029.1| exonuclease [Prevotella amnii CRIS 21A-A] Length = 287 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 14/210 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K K IVFD+ETTGLD NDRII+I +++ K R +F+ P G++ E + Sbjct: 1 MKLKLKRPLIVFDLETTGLDLVNDRIIQISYIKVYPDGKEERE-NIFINP-GKQIPEEVI 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118 L GIT+E + P+F E ++ N +FD+ + E R + Sbjct: 59 ALTGITNEDVAKAPTFKEKGKELS--LKFTGCDFAGFNSNRFDIPMLAEEFLRAGIEFDF 116 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYIKMMV 176 +++D SI H R +L + + Y G + H A D+ V + Sbjct: 117 SKCQLVDAQSI---FHKMERRNLAAAYEFYCGRKMEEDFKAHRADQDTEATWAVLQGEIE 173 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLL 206 S N +T+E R + + + S + Sbjct: 174 MYSSKN---QTDEKRILENSVDALADFSKM 200 >gi|161503006|ref|YP_001570118.1| exodeoxyribonuclease X [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864353|gb|ABX20976.1| hypothetical protein SARI_01068 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 231 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RPITPQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + P P I T+ ++ Sbjct: 59 ADKPWIEDVIP-----LYYGSQWYVAHNASFDRRVL----------PELPGEWICTMKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176 RR P + +L K +++ H AL D ++ + + I ++ Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIIR 152 >gi|293380924|ref|ZP_06626958.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 214-1] gi|290922499|gb|EFD99467.1| putative DnaQ family exonuclease/DinG family helicase [Lactobacillus crispatus 214-1] Length = 926 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 9/171 (5%) Query: 6 KMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K V D+ETTG +N II+ G ++ K +T+ + P+ R+ + L G Sbjct: 7 KDTFAVVDLETTGTQRENGHHIIQFGC-AIIKNLKVVKTYSFLINPH-REIPQSVVNLTG 64 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I D+ + + F + QN ++AHN FD+ F+N EL + + L ++ I Sbjct: 65 IHDQDVAKQRDFDYYAPKITKIL--QNTVFVAHNVDFDLPFLNYELVQHGYEAL-TNKAI 121 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 DT+ +A+ P+ L+ L + GI H H A D++ + + +++ Sbjct: 122 DTVELAKIAFPTFPSYKLSDLTTQLGIK--HLDPHKADSDAYGTAVLLLEI 170 >gi|224373045|ref|YP_002607417.1| exonuclease [Nautilia profundicola AmH] gi|223588855|gb|ACM92591.1| exonuclease [Nautilia profundicola AmH] Length = 203 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 11/171 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +V D ETTGLD K D II IGAV + + +R F +F+ P+ ++ S E++K+H IT + Sbjct: 32 VVVDTETTGLDRKKDEIISIGAVIVKNNRVLLSRKFHIFVKPS-KELSIESIKIHKITPD 90 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSRIIDTL 127 LK+ + F +F + + + +FDV +N +R + + + + Sbjct: 91 MLKNALEPETAIKMFLNFIKNR--PLVGYYLEFDVAMLNKLTKRYLGIKLPNRQIEVSAV 148 Query: 128 SIARR--KHPSSRNDL--NSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ P DL +S+ K + I + H AL D+ + + +YIK+ Sbjct: 149 YYDKKIGLIPQKHIDLRFDSIMKDLNLPIIGK--HDALNDAIMTALMYIKL 197 >gi|315057872|gb|ADT72201.1| Exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni S3] Length = 256 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 7/147 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE+TG SK I+EIGAV++ + + R FQ F+ ++ +L GIT E Sbjct: 72 FCIVDIESTGGVSKG-EILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYE 127 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ PS + + S+F F +++ ++AHN +FD FI+ L L +R I T+ Sbjct: 128 MVENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 184 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155 A+ S + L L + G+ +H Sbjct: 185 FAQCCIESPKYKLEVLKEFLGVENTHH 211 >gi|297584227|ref|YP_003700007.1| exonuclease RNase T and DNA polymerase III [Bacillus selenitireducens MLS10] gi|297142684|gb|ADH99441.1| Exonuclease RNase T and DNA polymerase III [Bacillus selenitireducens MLS10] Length = 233 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 10/166 (6%) Query: 11 VFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 VFD+ETTG K DRI+ IG V++ + T+ TF F+ + + S L GI +E Sbjct: 53 VFDLETTGFFPQKQDRILSIGGVKIKNNEITDDTFYSFVYYD-QPISETIRHLTGIQEED 111 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + + P+ + + + F+ F ++ +IAH+A + GF+ L R + R+IDT+ Sbjct: 112 VLNAPAEADVLTRFFAF--AEDDLFIAHHAAHEKGFMQDALWRSFRATFQR-RLIDTI-F 167 Query: 130 ARRKHPSSRND--LNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + P R+ L + C+ + I + R H AL D+ L ++++I Sbjct: 168 LTKLQPDLRDTAELEACCRYFNIEPAGR--HHALHDAKLAAELWIH 211 >gi|90417008|ref|ZP_01224937.1| ribonuclease T [marine gamma proteobacterium HTCC2207] gi|90331355|gb|EAS46599.1| ribonuclease T [marine gamma proteobacterium HTCC2207] Length = 221 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +S+ D ++EI AV + + T + P G Sbjct: 22 RFRGFLPVVVDVETGGFNSRTDAMLEIAAVILEMDAQGNIQIKETHSKNIDPFPGAVVEK 81 Query: 58 EALKLHGIT-----DEFLKDKPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 AL+ GI ++ + IF + +AHNA FD+GF+NA Sbjct: 82 AALEFTGIDIYDPERMPEEEGEALRDIFRPIRHEISATGCTRSVMVAHNAHFDLGFVNAA 141 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + R I ++P P DT ++A + + L C+ + +RS H AL D+ Sbjct: 142 VNRNQIKRNPFHPFSCFDTSTLAGLAY--GQTVLAKACQAAKMDFDNRSAHSALYDAVKT 199 Query: 168 SDVYIKMMVGGSQIN 182 ++++ ++ + Sbjct: 200 AELFCGIVNRWKDLG 214 >gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW] gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW] Length = 212 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 10/168 (5%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 + D ET + + IG + + RT + + P + +P + +HGI E Sbjct: 8 LAIDFETA--NEQRASACSIGLCRVENGR-VVRTAEYLIRPPELRFTPFTIAIHGIRPED 64 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 + D P F I+ + A +AHNA FD+ + A L + + TL Sbjct: 65 VVDAPEFPDIWDAMRPEL--EGAVLLAHNASFDMSVLRAMLGTYGL-AVPDHGYLCTLVA 121 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 ARR P ++ LN L +++GI + H H A D+ + + ++ M Sbjct: 122 ARRAWPDLEKHRLNHLARQFGIELEH---HRAGSDARACAAIALRAMA 166 >gi|152995559|ref|YP_001340394.1| ribonuclease T [Marinomonas sp. MWYL1] gi|150836483|gb|ABR70459.1| ribonuclease T [Marinomonas sp. MWYL1] Length = 222 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 21/207 (10%) Query: 4 KNKMR---KIVFDIETTGLDSKNDRIIEIGA-VELLDYSK---TNRTFQVFLCP-NGRKN 55 K++ R +V D+ET G + K D ++E+ A + +D + + T + P G Sbjct: 7 KDRFRGFLPVVIDVETAGFNQKTDALLEMAASILRMDENGDLYIHETLDFLIKPFEGANL 66 Query: 56 SPEALKLHGITD-----EFLKDKPSFSSIFSEFWDFF---NEQNAEWIAHNAKFDVGFIN 107 AL GI + + + + + +FS+ + A + HNA FD GF+N Sbjct: 67 EKAALDFTGIDPFAPGRQDMPETEALNQMFSKVRKELKSVGCKRAILVGHNAAFDHGFLN 126 Query: 108 AELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSH 165 A ++R I ++P P DT S+A + L C+ I S+ H A D+ Sbjct: 127 AAIERADIKRNPFHPFSSFDTASLAGLVF--GQTVLAKACEAASIPFSNSEAHSAKYDTE 184 Query: 166 LLSDVYIKMMVGGSQINFGFKTNEDRF 192 ++++ +M+ ++ G+ E+ Sbjct: 185 KTAELFCEMVNRLKRLG-GWPLVENEA 210 >gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Veillonella atypica ACS-134-V-Col7a] gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Veillonella atypica ACS-134-V-Col7a] Length = 861 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 8/169 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+E+TG D+ DRII+I A+ + F+ F+ P K+ + +HG TD + Sbjct: 495 VVYDVESTGTDTTQDRIIQIAAMRIDKDGNEIERFERFINPG--KSVGTSQLVHGFTDAY 552 Query: 70 LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + S + F +F N + HN +D+ ++ EL R N + DTL Sbjct: 553 LAEHGESPKVVLEAFKEF--SNNRIIVGHNVNYDISILSHELARHNLGEPQFKAVYDTLD 610 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 I RR +P+ + L L K + I+H H A+ D + I + Sbjct: 611 IFRRFYPTLENHKLGFLSKYF--PINHTPTHNAMDDIIATGQLLIYAVR 657 >gi|296101815|ref|YP_003611961.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056274|gb|ADF61012.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 220 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET L I+E+ +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 VIDTETCDLQGG---IVEVASVDVIDGKIVNPMSH-LVRPD-RPISPQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEEVIPHYY-----GSPWYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K +++ H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVRTPEGLHHHRALYDCYITAALLIDIM 151 >gi|296113547|ref|YP_003627485.1| ribonuclease T [Moraxella catarrhalis RH4] gi|295921241|gb|ADG61592.1| ribonuclease T [Moraxella catarrhalis RH4] gi|326559550|gb|EGE09964.1| ribonuclease T [Moraxella catarrhalis 7169] gi|326564652|gb|EGE14870.1| ribonuclease T [Moraxella catarrhalis 46P47B1] gi|326567767|gb|EGE17873.1| ribonuclease T [Moraxella catarrhalis BC1] Length = 232 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 82/221 (37%), Gaps = 24/221 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++ D ++EI V + + P +G P Sbjct: 15 RFRGFLPVVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEP 74 Query: 58 EALKLHGIT-DEFLKDKPSFSS--IFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 ALK GI D + S + + + HNA FD+GF+N Sbjct: 75 AALKFTGINPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLN 134 Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R N P ++DT+S A + L C G+ ++ H AL D+ Sbjct: 135 AAIARTNSKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGLEFDNQHAHSALYDA 192 Query: 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISL 205 ++++ ++ N TN + + T P+ + Sbjct: 193 QKTAELFCHIVNQ----NTLLSTNHANLTQNDTPTSPHQTP 229 >gi|238755817|ref|ZP_04617148.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473] gi|238705975|gb|EEP98361.1| Exodeoxyribonuclease 10 [Yersinia ruckeri ATCC 29473] Length = 249 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 23/174 (13%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 KM V D ET GLD I+EI +++ +D TN + P+ R S EA+ +H I Sbjct: 29 KMNFRVIDTETCGLDGG---IVEIASLDFIDGEITN-PMSDLVSPD-RPISIEAMAIHHI 83 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T+E ++ KP + ++ + + ++AHNA FD G + P I Sbjct: 84 TEEMVEGKPRIAVAVGKY-----QGSPYYVAHNAPFDRGVL----------PEMGGEWIC 128 Query: 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMMV 176 T +AR +P + L + ++ + H AL D ++ + ++ ++M Sbjct: 129 TYKLARALYPDIKYSNQYLRYALRLDVTPPADLYPHRALYDCYITAALFQRIMR 182 >gi|306827727|ref|ZP_07460999.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes ATCC 10782] gi|304430045|gb|EFM33082.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes ATCC 10782] Length = 819 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 75/176 (42%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 1 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + L + P Sbjct: 58 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ P + +L L ++ I ++ H A+ D+ + ++++++ Sbjct: 116 --RVDTVELAQLFFPRFEKYNLGHLSRQLNIDLA--EAHTAIADARATAILFLRLL 167 >gi|21672469|ref|NP_660536.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009131|sp|Q8K9V5|RNT_BUCAP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|21623085|gb|AAM67747.1| ribonuclease T [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 219 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 25/205 (12%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGR 53 + N+ R +V DIET G + K D ++EI + + L + + P G Sbjct: 9 LLSNRFRTFYPVVIDIETAGFNPKTDAVLEIALITLKMDKLGWLHKEDILHFHIKPFKGS 68 Query: 54 KNSPEALKLHGITD-EFLKDKPSFSSIFSEFWD----FFNEQNA---EWIAHNAKFDVGF 105 + +A+ + I L+ S + + Q +AHNA FD F Sbjct: 69 IINSDAIAFNKIDPFNPLRGAISETLAIESILEKVNYGIKIQGCTRGIVVAHNAHFDHNF 128 Query: 106 INAELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 + A +QR I +P P DT +++ + L CK G++ + H AL D Sbjct: 129 LMAAIQRVKIKNNPFHPFVTFDTAALSGLA--VGQTVLAKACKAIGLSFDNNQAHSALYD 186 Query: 164 SHLLSDVYIKMM-----VGGSQINF 183 S ++++ K++ +GG IN Sbjct: 187 SLQTANLFCKIVNRWKGLGGWPINV 211 >gi|260063517|ref|YP_003196597.1| putative DNA polymerase III subunit epsilon [Robiginitalea biformata HTCC2501] gi|88782961|gb|EAR14135.1| putative DNA polymerase III epsilon chain [Robiginitalea biformata HTCC2501] Length = 258 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 15/212 (7%) Query: 2 IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 ++ N + I FD+ETTG + DRI+E+ +++ + +K ++T+ + P G EA Sbjct: 1 MKLNLSKPICFFDLETTGTNIATDRIVELAILKVFPNGNKESKTW--LVNP-GVPIPEEA 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL 118 +HGITDE + +P+F + E + Q + N +FD+ + EL R D Sbjct: 58 SAIHGITDEKVAGEPTFRELAREVYQMI--QGCDLAGFNSNRFDIPLLAEELLRAGVDFD 115 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + ++ + H + L + + Y G ++ H A D+ +V + + Sbjct: 116 MKNAV--SVDVQTIFHKMEKRTLAAAYQFYCGKELTD--AHSATADTQATYEVLLSQLDR 171 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKRD 209 S++ + E F TV ++RD Sbjct: 172 YSELTNNVQ--ELAAFSTHNDTVDFAGFIRRD 201 >gi|86153724|ref|ZP_01071927.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612917|ref|YP_001000159.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81-176] gi|167005117|ref|ZP_02270875.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81-176] gi|85842685|gb|EAQ59897.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250067|gb|EAQ73025.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni 81-176] Length = 253 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 7/147 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE+TG SK I+EIGAV++ + + R FQ F+ ++ +L GIT E Sbjct: 72 FCIVDIESTGGVSKG-EILEIGAVKIQNSKEIAR-FQSFVK--VKEIPENITELTGITYE 127 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ PS + + S+F F +++ ++AHN +FD FI+ L L +R I T+ Sbjct: 128 MVENAPSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISRALNECGFGILL-NRRICTIE 184 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155 A+ S + L L + G+ +H Sbjct: 185 FAQCCIESPKYKLEVLKEFLGVENTHH 211 >gi|307638212|gb|ADN80662.1| DNA polymerase III epsilon subunit [Helicobacter pylori 908] gi|325996805|gb|ADZ52210.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2018] gi|325998398|gb|ADZ50606.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2017] Length = 287 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 10/211 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVRGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNED 190 +R S R L+ L + G I H A D+ ++ ++ ++ T + Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNL--PSYIKTTMDL 244 Query: 191 RFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 F + T+ R + + + + E Sbjct: 245 IDFSKCANTLIKRPPRSRYQEIPSPFSLFER 275 >gi|270290674|ref|ZP_06196898.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4] gi|270280734|gb|EFA26568.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4] Length = 178 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 9/167 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET I + + T+ + + P K +++HGI Sbjct: 1 MNFVAIDFETA--APARASACSIALTVVQNDQITDELYS-LINPET-KFHWRNVQVHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++D P+F ++ FF +AHNA FD + L+R + L P + +DT Sbjct: 57 EADVQDAPTFPELWPILQPFFTPDQLV-VAHNANFDNSVLKKTLERYELNRL-PYQTLDT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 L +R P+ + LN+LC GI + H H AL DS +++ + Sbjct: 115 LRTSRSFFPNYPNHKLNTLCDNLGIELEHH--HNALDDSLACANILL 159 >gi|34541463|ref|NP_905942.1| exonuclease [Porphyromonas gingivalis W83] gi|34397780|gb|AAQ66841.1| exonuclease [Porphyromonas gingivalis W83] Length = 259 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 16/211 (7%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 M K I FD+ETTG+D DRI+EI ++++ D S+ +T + P R PE+ Sbjct: 1 MKLNLKNPLIFFDLETTGVDLVRDRIVEISILKVMPDGSEECKT--RRINPE-RPIPPES 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP- 117 +HGI DE +KD P F S+ + + + N +FDV + E R D Sbjct: 58 TAIHGIRDEDVKDCPPFRSVAKSLAQWI--EGCDLAGFNSTRFDVPMLVEEFLRAGVDID 115 Query: 118 LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 L ++ID +I + P L + + Y + + H A D+ DV+ + Sbjct: 116 LRHRKLIDVQTIFHKMEP---RTLEAATRFY-CNRTLENAHSAEADTRATYDVFKAQLDR 171 Query: 178 GSQINFGFKTNEDRFFKEEKKTVPNISLLKR 208 G N+ F + + N+ R Sbjct: 172 YE----GTLENDMAFLADFSRQSRNVDFAGR 198 >gi|223044042|ref|ZP_03614082.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis SK14] gi|222442585|gb|EEE48690.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus capitis SK14] Length = 184 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V++++ T +F + P + + +HGI E Sbjct: 6 FVALDFETA--NGKRTSICSVGMVKVINNQIT-ESFYTLVNPFDY-FTETNINVHGIRPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D PSF ++ F NE +AHNA FD+ ++ L+ +N + + Sbjct: 62 NVEDAPSFEYVYPYMLKFINE--LPVVAHNAAFDMNVLHQSLKSLNIET-PSMTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+R + R L L Y + H AL D+ + + +++ Sbjct: 119 LAKRTIDAYRYGLKHLMNHYQLDF--HGHHDALNDAKACAMITFRLL 163 >gi|283851810|ref|ZP_06369087.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B] gi|283572726|gb|EFC20709.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B] Length = 249 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 23/183 (12%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D E TG D + ++ IGAV L S F + P +A +H +T Sbjct: 49 FVAVDTELTGFDPRRHALVSIGAVRLRGLSILPGEAFYTLVRPPAA-VPRDATLIHRLTG 107 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L D P + + F DF A + H+ D+GF+NA +R L + IDTL Sbjct: 108 AALADAPPVAEALAAFLDFLGP--AVVVGHHVDLDMGFLNAAARRHMGGELA-APCIDTL 164 Query: 128 SIARRK----------------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +A L +LC+RYG+ + H A D+ + ++ Sbjct: 165 RLAMALEEKRLAVAGGAGGPDGFERVDYRLPALCRRYGLP--GFAAHDARADALATAYLF 222 Query: 172 IKM 174 + + Sbjct: 223 LYL 225 >gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6] gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6] Length = 861 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 8/169 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V+D+E+TG D+ DRI++I A+ + F+ F+ P K+ + +HG TD + Sbjct: 495 VVYDVESTGTDTTEDRIVQIAAMRIDKDGNEIERFERFINPG--KSVGTSQLVHGFTDAY 552 Query: 70 LKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L + S + F +F N + HN +D+ ++ EL R N + DTL Sbjct: 553 LAEHGESPKVVLEAFKEF--SNNRIIVGHNVNYDISILSHELARHNLGEPQFKAVYDTLD 610 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 I RR +P+ + L L K + I+H H A+ D + I + Sbjct: 611 IFRRFYPTLENHKLGFLSKYF--PINHTPTHNAMDDIIATGQLLIYAVR 657 >gi|330001239|ref|ZP_08303928.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3] gi|328537753|gb|EGF63955.1| exodeoxyribonuclease 10 [Klebsiella sp. MS 92-3] Length = 219 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++D TN + P+ R SP+A+ +H IT+E + Sbjct: 4 VIDTETCGLQGG---IVEIASVDIVDGQITNPMSH-LVRPD-RPISPQAMAIHRITEEMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + + ++AHNA FD + P I T+ +A Sbjct: 59 ADKPWIEEIIPHYH-----GSPWYVAHNASFDRRVL----------PEMHGEGICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + L K + + H AL D ++ + + + ++ Sbjct: 104 RRLWPGIKYSNMGLYKSRKLNVTTPPGLHHHRALYDCYITAALLLDII 151 >gi|121596441|ref|YP_988337.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42] gi|120608521|gb|ABM44261.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42] Length = 218 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 9/153 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTG+ + R E+ V L++ + +Q + G + P +L GIT+ Sbjct: 6 IAVIDFETTGMMPAQGARATEVAIV-LMEGGRVVDRYQSLMR-TGVRIPPFITQLTGITN 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P +++ E F +A +AHNA FD F AELQ P T+ Sbjct: 64 AMVEAAPDAAAVMREAARFVG--DAPMVAHNAAFDRKFWQAELQHAGLAAPHPFA--CTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159 ++RR +P + L L G+ + R H Sbjct: 120 LLSRRVYPDAPSHSLGRLTDHLGLPRAGR-AHR 151 >gi|222109241|ref|YP_002551505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY] gi|221728685|gb|ACM31505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY] Length = 218 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 9/153 (5%) Query: 9 KIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D ETTG+ + R E+ V L++ + +Q + G + P +L GIT+ Sbjct: 6 IAVIDFETTGMMPAQGARATEVAIV-LMEGGRVVDRYQSLMR-TGVRIPPFITQLTGITN 63 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 ++ P +++ E F +A +AHNA FD F AE+Q P T+ Sbjct: 64 AMVEAAPDAAAVMREAARFVG--DAPMVAHNAAFDRKFWQAEMQHAGLAAPHPFA--CTV 119 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159 ++RR +P + L L G+ + R H Sbjct: 120 LLSRRVYPDAPSHSLGRLTDHLGLPRAGR-AHR 151 >gi|209559092|ref|YP_002285564.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes NZ131] gi|209540293|gb|ACI60869.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus pyogenes NZ131] Length = 833 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 75/176 (42%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + L + P Sbjct: 72 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ P + +L L ++ I ++ H A+ D+ + ++++++ Sbjct: 130 --RVDTVELAQLFFPRFEKYNLGHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181 >gi|94993950|ref|YP_602048.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS10750] gi|94547458|gb|ABF37504.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes MGAS10750] Length = 833 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 75/176 (42%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + L + P Sbjct: 72 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ P + +L L ++ I ++ H A+ D+ + ++++++ Sbjct: 130 --RVDTVELAQLFFPRFEKYNLGHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181 >gi|319399859|gb|EFV88106.1| exonuclease family protein [Staphylococcus epidermidis FRI909] Length = 184 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V+++D T +F + P + + +HGI E Sbjct: 6 FVALDFETA--NGKRTSICSVGMVKVIDNQIT-ESFHTLVNPFDY-FTETNINVHGIHPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++D P F ++ F ++ +AHNA FD+ ++ L+ +N D + Sbjct: 62 DVQDAPGFKHVYPYMLQFIDQ--LPVVAHNAAFDMNVLHQSLKSLNIDT-PSLTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+R + R L L Y + H AL D+ + + +++ Sbjct: 119 LAKRTINAYRYGLKHLMNHYHLDF--HGHHDALNDAKACAMITYRLL 163 >gi|308185320|ref|YP_003929453.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180] gi|308061240|gb|ADO03136.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180] Length = 287 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 8/161 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 75 FVDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSTHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R S R L+ L + G I H A D+ ++ Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLF 227 >gi|227519479|ref|ZP_03949528.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104] gi|257084298|ref|ZP_05578659.1| exonuclease [Enterococcus faecalis Fly1] gi|257416905|ref|ZP_05593899.1| exonuclease [Enterococcus faecalis AR01/DG] gi|257421652|ref|ZP_05598642.1| exonuclease [Enterococcus faecalis X98] gi|307288644|ref|ZP_07568625.1| exonuclease [Enterococcus faecalis TX0109] gi|227073091|gb|EEI11054.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104] gi|256992328|gb|EEU79630.1| exonuclease [Enterococcus faecalis Fly1] gi|257158733|gb|EEU88693.1| exonuclease [Enterococcus faecalis ARO1/DG] gi|257163476|gb|EEU93436.1| exonuclease [Enterococcus faecalis X98] gi|306500398|gb|EFM69734.1| exonuclease [Enterococcus faecalis TX0109] gi|315155598|gb|EFT99614.1| exonuclease [Enterococcus faecalis TX0043] gi|315165305|gb|EFU09322.1| exonuclease [Enterococcus faecalis TX1302] Length = 188 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 14/181 (7%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M FD ET I V++ + + F + P ++HGI Sbjct: 12 MNFYAFDFETA--SYDKHSACSIAIVKVENSRIVDE-FYTLIKPET-PFFWRNTQIHGIH 67 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P F ++ + + N +AHNA FD + L + + T Sbjct: 68 ESDVANAPKFPEVWQQI-QHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQ-PNYLSLCT 125 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + +R+ P + LN++C+ IT+++ H AL DS +++ + + FG Sbjct: 126 VKTSRKLFPEFPNHKLNTVCENLNITLNNH--HDALEDSRACAEILL-----QQEQRFGV 178 Query: 186 K 186 + Sbjct: 179 E 179 >gi|304382373|ref|ZP_07364875.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973] gi|304336490|gb|EFM02724.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973] Length = 284 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 60/216 (27%), Positives = 95/216 (43%), Gaps = 16/216 (7%) Query: 2 IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N R IVFD+ETTGLD NDRII++ +++L R +F+ P R E + Sbjct: 1 MKLNLTRPLIVFDLETTGLDLVNDRIIQLSYIKVLPDGTELRK-NIFINPE-RSIPKEVV 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118 +L GITD+ +K+ P+F + + + F + ++ +N FD+ + E R D Sbjct: 59 ELTGITDDDVKEAPTFKEMAPDLNNEF--RGCDFAGYNSNHFDIPMLAEEFLRAGIDFDF 116 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVY---IK 173 R+ID +I H R L + K Y G + + H A D+ V ++ Sbjct: 117 SKCRLIDAQTI---FHKMERRHLAAAYKFYCGRKMEEDFTAHRADEDTEATYRVLQGELE 173 Query: 174 MMVGGSQINFGFKTNED-RFFKEEKKTVPNISLLKR 208 M G Q + D E K N+ R Sbjct: 174 MYQPGKQEEAERQLENDMDVLAEFSKNNNNVDFAGR 209 >gi|94988157|ref|YP_596258.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS9429] gi|94992044|ref|YP_600143.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS2096] gi|94541665|gb|ABF31714.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes MGAS9429] gi|94545552|gb|ABF35599.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes MGAS2096] Length = 833 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 75/176 (42%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + L + P Sbjct: 72 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ P + +L L ++ I ++ H A+ D+ + ++++++ Sbjct: 130 --RVDTVELAQLFFPRFEKYNLGHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181 >gi|71892146|ref|YP_277878.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640967|sp|Q492U0|RNT_BLOPB RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|71796252|gb|AAZ41003.1| ribonuclease T [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 217 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 80/196 (40%), Gaps = 18/196 (9%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGA----VELLDYSKTNRTFQVFLC-PNGRKNSP 57 R +V D+ET GLD+ + ++EI ++ + + + + G P Sbjct: 13 RFRGFYPVVVDVETAGLDANINALLEIAVATFKMDEYGWLCVDGSLNFHIKSFPGAIIQP 72 Query: 58 EALKLHGIT-DEFLKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109 E+L +GI + L+ + E ++ A +AHNA FD F+ A Sbjct: 73 ESLAFNGIDLNSPLRAAVTEQEALHEIFEMVRQGIKTQGCSRAIIVAHNAFFDHSFLMAA 132 Query: 110 LQR---INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 ++R + K+P P + DT +++ + L C G+ H AL D+ Sbjct: 133 VERVSFMEKNPFHPFVMFDTATLSGLVF--GQTVLAKACACAGVFFDKNKAHSALYDTER 190 Query: 167 LSDVYIKMMVGGSQIN 182 + ++ +++ ++ Sbjct: 191 TAMLFCELVNKWKRLG 206 >gi|91202954|emb|CAJ72593.1| strongly similar DNA polymerase epsilon subunit (3'-5' exonuclease) [Candidatus Kuenenia stuttgartiensis] Length = 204 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 10/168 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M+ + D ET ++K + +G + + + RT + P P + +HGI+ Sbjct: 1 MKCVAIDFETA--NAKRSSVCSLGLAIIEEQTIVKRT-SWLIRPPELYFDPFSTYIHGIS 57 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++DKP F ++ E + F + + +AHNA FD+ + L P P T Sbjct: 58 AKDVEDKPEFYQLWDEIFPFL--EGSYLVAHNASFDMSVLCCILDVYKI-PYPPLNYFCT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 L+IA+R P LN + + I H H A D+ + + + Sbjct: 115 LAIAKRVWPGLLGYALNKISRYLEIEFKH---HDAEEDAVACAKILLH 159 >gi|255029619|ref|ZP_05301570.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Listeria monocytogenes LO28] Length = 132 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 6/132 (4%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + R IV D+ETTG + + DRII+ A ++ K T+ FL P + +L G Sbjct: 3 QKRYIVVDLETTGNQASREDRIIQFAAC-FVESGKRLETYTTFLNPE-KPIPAFIQELTG 60 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I+ + +K+ P F + + ++ ++AHN FD F+ E+ R L + + Sbjct: 61 ISPKDVKNAPLFEDVAPIIANLL--EDTIFVAHNVSFDWTFLEREMTRAGIS-LGKMKKL 117 Query: 125 DTLSIARRKHPS 136 DT+ +AR +P Sbjct: 118 DTVELARIMYPG 129 >gi|157145382|ref|YP_001452701.1| exodeoxyribonuclease X [Citrobacter koseri ATCC BAA-895] gi|157082587|gb|ABV12265.1| hypothetical protein CKO_01122 [Citrobacter koseri ATCC BAA-895] Length = 220 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+EI +V+++ N + P+ R SP+A+ +H I++ + Sbjct: 4 VIDTETCGLQGG---IVEIASVDVVAGRIVNPMSH-LVRPD-RPISPQAMAIHRISESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + ++AHNA FD + P P I T+ ++ Sbjct: 59 ADKPWIEDIIP-----LYHGSEWYVAHNASFDRRVL----------PEMPGEWICTMKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K +++ H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIM 151 >gi|126664190|ref|ZP_01735182.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] gi|126623722|gb|EAZ94418.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38] Length = 202 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF-QVFLCPNGRKNSPEALKLHG 64 K R +VFD ETTGLD K+DRI+ IGAV + + F +VFL + K E++ +HG Sbjct: 31 KKRYVVFDCETTGLDYKSDRILSIGAVAIENNQIIVGDFMEVFLLQDVFK--AESVPIHG 88 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI- 123 I E ++K + F +F ++A + H+ FD+ IN L R+ L + Sbjct: 89 ILKEGKEEKIVEAEAIIRFLEFI--KDATLVGHHVDFDIEMINQGLARLEVGKLKNQAMD 146 Query: 124 IDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLS 168 D + + P ++ L+ LC Y I S R H A D+ + + Sbjct: 147 TDVMYQKLKYLPQEQHSSLDELCDIYKIRKSDR--HTASGDAFITA 190 >gi|258545959|ref|ZP_05706193.1| ribonuclease T [Cardiobacterium hominis ATCC 15826] gi|258518837|gb|EEV87696.1| ribonuclease T [Cardiobacterium hominis ATCC 15826] Length = 212 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 20/207 (9%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-----TFQVFLCP-NGRKNS 56 R +V D+ET G D+K D ++E+ AV L+++ + R T + P G Sbjct: 9 RFRGFLPVVIDVETGGFDAKKDALLELAAV-LVNFDENQRLCRTHTIHYHIHPFPGANID 67 Query: 57 PEALKLHGITD-EFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINA 108 PEALK+ GI L+ F+D + + HNA FD+GFINA Sbjct: 68 PEALKITGIDPYHPLRPAYHEDKAAERFFDEIRAYQKQQECTRSILVGHNATFDLGFINA 127 Query: 109 ELQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 +R ++P P ++DT+S+ + + L + ++ G HGA D+ L Sbjct: 128 LAERTDYKRNPFHPFSVLDTVSLGALAY--GQTVLARIARQGGFEYDSSKAHGAKYDAEL 185 Query: 167 LSDVYIKMM-VGGSQINFGFKTNEDRF 192 +D++ ++ ++ + + +E++ Sbjct: 186 TADIFCHIVNTWAEKVGYSWPASEEQP 212 >gi|188528322|ref|YP_001911009.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470] gi|188144562|gb|ACD48979.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470] gi|308064307|gb|ADO06194.1| DNA polymerase III subunit epsilon [Helicobacter pylori Sat464] Length = 287 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 85/217 (39%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYITELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G I H A D+ ++ ++ I+ Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + ++T P SL +R K L I Sbjct: 247 FSKCANTLIKRPPRARHQETPPPFSLFERTKGLLNII 283 >gi|15612503|ref|NP_224156.1| DNA polymerase III subunit epsilon [Helicobacter pylori J99] gi|4156060|gb|AAD07016.1| DNA POLYMERASE III [Helicobacter pylori J99] Length = 323 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 8/161 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GIT E Sbjct: 111 FVDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGITYEDT 167 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 168 LNAPSAHEALQELRIFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 224 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R S R L+ L + G I H A D+ ++ Sbjct: 225 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLF 263 >gi|225021962|ref|ZP_03711154.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii ATCC 33806] gi|224945248|gb|EEG26457.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii ATCC 33806] Length = 456 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 84/212 (39%), Gaps = 13/212 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE---ALKLHGI 65 + D+ET ++ I +IG V + D + + +LC +++HGI Sbjct: 113 FVGVDVETA--NADWGSICQIGVVRVTDGMQVDS--HEWLCQPPAGIDHFDEGNIRIHGI 168 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + + D P F+++F E + +Q +AHNA+FD+ + P+ + Sbjct: 169 TPDMVTDAPDFATVFPEVVAYVADQ--VLVAHNAQFDLTAFSRACHATG-TPVPHWKFAC 225 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 +L+ +R + + L + + G+ + + H A+ D+ + +++++ + Sbjct: 226 SLAASRAAKLGITSHRLPVVAQHLGVELDNH--HDAVADARACAGIFVQLALRAHATGDI 283 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F I + + P T Sbjct: 284 ETVFTTLGFSLGDLNTERIYPVLSNPPTVTVA 315 >gi|163794470|ref|ZP_02188441.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199] gi|159180194|gb|EDP64717.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199] Length = 458 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 8/168 (4%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYS-KTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I DIETTGLD+ ++ GA+ + K + + L P G ++ +HGITD Sbjct: 15 IAIDIETTGLDASRAHAVQFGAIPIAKGVLKPDDACEQMLNP-GIPIPSSSIAIHGITDA 73 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ P+ S ++ +N I H+ FD+ + AE +R D P R + Sbjct: 74 MVRNAPTLSDVWPNLVG--QWKNRVVIGHSIGFDLTVLAAEAKRKKLDWQKP-RALCVRM 130 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A P+ + + L++L + R++H AL D+ +++ ++ Sbjct: 131 LATIAAPTLASHSLDALATWLN--LETRNRHRALGDAEAAGLIFLALI 176 >gi|313843978|ref|YP_004061641.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus OlV1] gi|312599363|gb|ADQ91385.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus OlV1] Length = 447 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 22/229 (9%) Query: 7 MRKIVFDIETTGL---------------DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN 51 M I FD ET+GL + R + + A + +TF + P+ Sbjct: 5 MNYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIRPD 64 Query: 52 GRKNSPEALKLHGITDE-FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAEL 110 G + E++ +HGI++E L + F ++ +F +F + +AHNA+FD + +E+ Sbjct: 65 GFQIGEESIAIHGISNEKALSEGRPFPEVYRDFMEFIGPRTKTLVAHNAQFDTSVLQSEM 124 Query: 111 QRINKDPLDPSRII--DTLSIARRKHPSSRNDLNSL-CKRYGITISHRSKHGALLDSHLL 167 R ++ TL + R + L L +G + H +L DS Sbjct: 125 LRHGIPLEQIDDLVIRCTLEMYRDRF-MGPIKLTKLYADIFGEEFDN--AHNSLADSIAC 181 Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 VY ++ + + + I+ K+ + L + Sbjct: 182 GRVYPYLLGQTERTLKPLPIKKVIIGASSVASAIGINQYKKPQELVEEL 230 >gi|146312061|ref|YP_001177135.1| exodeoxyribonuclease X [Enterobacter sp. 638] gi|145318937|gb|ABP61084.1| Exodeoxyribonuclease X [Enterobacter sp. 638] Length = 220 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET L I+E+ +V++++ N + P+ R SP+A+ +H IT+ + Sbjct: 4 VIDTETCDLQGG---IVEVASVDVINGQIVNPMSH-LVRPD-RPISPQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + ++ + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEEVIPNYY-----GSTWYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K + + H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLNVKTPEGLHHHRALYDCYITAALLIDIM 151 >gi|312963198|ref|ZP_07777682.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6] gi|311282464|gb|EFQ61061.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens WH6] Length = 203 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 9/177 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EIG V +L+ +Q + G + +L GI+ Sbjct: 3 RIAVIDFETTGITPSSHCRATEIGVV-ILERGHIVDRYQSLMN-AGVRVPAFIEQLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L+ P + +E +F +AHNA FD F + EL I + L + + Sbjct: 61 NAMLRSAPPAERVMNEVNEFVGT--TPLMAHNAAFDQKFWDYELGLIRRTRL--QKFACS 116 Query: 127 LSIARRKHP-SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 L +ARR P + + L +L + H AL D+ + +++ + Q + Sbjct: 117 LLLARRLMPAAPNHKLGTLNSYAQLP-HTGQAHRALADAEMAANLTTHLARELRQTH 172 >gi|86151527|ref|ZP_01069741.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni 260.94] gi|315123999|ref|YP_004066003.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841156|gb|EAQ58404.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni 260.94] gi|315017721|gb|ADT65814.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 253 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 7/147 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE+TG SK I+EIGA ++ + + R FQ F+ ++ +L GIT E Sbjct: 72 FCIVDIESTGGVSKG-EILEIGAAKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYE 127 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ PS + + S+F F +++ ++AHN +FD FI+ L L +R I T+ Sbjct: 128 MVENAPSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 184 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155 A+ S + L L + G+ +H Sbjct: 185 FAQCCIESPKYKLEVLKEFLGVENTHH 211 >gi|301058175|ref|ZP_07199227.1| exonuclease, DNA polymerase III, epsilon subunit family protein [delta proteobacterium NaphS2] gi|300447807|gb|EFK11520.1| exonuclease, DNA polymerase III, epsilon subunit family protein [delta proteobacterium NaphS2] Length = 233 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 19/189 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 +VFD E TGL + D II IGAV + + TF + P G+ +P L +H IT Sbjct: 42 FVVFDTELTGLKQRRDEIIAIGAVRIKNARICFEDTFYALIKPQGKLYTPSTL-IHRITP 100 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L+ + F DF A + H+ D+GF+N Q + S +DTL Sbjct: 101 GELRGAEPIEEVLPRFIDFCG--GAFLVGHHVSLDLGFVNRACQNYLGGVI-KSPSLDTL 157 Query: 128 SIAR------------RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +AR + L+SL + + ++H AL D+ + ++I ++ Sbjct: 158 RLARAYKTSLNGPHLDHQEQQDSYKLSSLSDEFHLP--KFAEHNALQDALQTAYLFIYLI 215 Query: 176 VGGSQINFG 184 + G Sbjct: 216 HKMRNGDTG 224 >gi|281419997|ref|ZP_06250996.1| exonuclease [Prevotella copri DSM 18205] gi|281405797|gb|EFB36477.1| exonuclease [Prevotella copri DSM 18205] Length = 287 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 15/232 (6%) Query: 2 IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N + IVFD+ETTGLD DRII+I ++++ +R +++ P + E + Sbjct: 1 MKLNLTKPLIVFDLETTGLDMIKDRIIQISYIKVMPDGTEDRK-NLYVNP-CMEIPAEVV 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118 L GI++E +KD P+F + + F ++ +N FDV + E R D Sbjct: 59 ALTGISNEDVKDAPTFKQLAATLEKEF--TGCDFAGYNSNHFDVPMLAEEFLRAGIDFDF 116 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYIKMMV 176 + R+ID +I + R +L + K Y G + H A D+ V + + Sbjct: 117 NKCRLIDAQTIFMKM---ERRNLAAAYKFYCGRKMEEDFEAHRADQDTEATYRVLMGELD 173 Query: 177 GGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTI 228 + G + +R + + S K + RI EE+ + + Sbjct: 174 KYAP---GVQDEPERVLNNNMDELADFSKQKDNVDFAGRIVWEEVKDAQGNV 222 >gi|50913902|ref|YP_059874.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS10394] gi|139474153|ref|YP_001128869.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes str. Manfredo] gi|50902976|gb|AAT86691.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes MGAS10394] gi|134272400|emb|CAM30656.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes str. Manfredo] Length = 833 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + L + P Sbjct: 72 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ P + +L+ L ++ I ++ H A+ D+ + ++++++ Sbjct: 130 --RVDTVELAQLFFPRFEKYNLSHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181 >gi|270293052|ref|ZP_06199263.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus sp. M143] gi|270279031|gb|EFA24877.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG [Streptococcus sp. M143] Length = 157 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 10/166 (6%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + R +V D+E T SK +II++G V + + N+ + + P+ + Sbjct: 1 MNARNDRYVVVDLEATSTGSK-AKIIQVGIVVIENGEIINQ-YATDVNPH-EPLDSHIKE 57 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPS 121 L G+TD L P FS + + ++ ++ ++AHN +FD + L + P Sbjct: 58 LTGLTDRRLAAAPEFSQVAGKIFELV--KDGIFVAHNVQFDANLLAEFLFFEGYELRTP- 114 Query: 122 RIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHL 166 +DT+ +A+ +P + +L LC+ GI + H H AL D+ Sbjct: 115 -RVDTVELAQVLYPQFEKYNLGILCQELGIELEH--AHTALSDAQA 157 >gi|302342239|ref|YP_003806768.1| DNA polymerase III, subunit epsilon [Desulfarculus baarsii DSM 2075] gi|301638852|gb|ADK84174.1| DNA polymerase III, epsilon subunit [Desulfarculus baarsii DSM 2075] Length = 240 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 17/179 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 +V D+ETTG+D D ++ GAV L + F + P G + ++ +HG+T Sbjct: 47 FVVLDLETTGVDLARDGVVSAGAVRLRGGRVLLGQYFDEMILPQG-EVPASSITIHGLTP 105 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L + +F + F +AHNA FD+ FI+ ++ + L + + TL Sbjct: 106 QRLAAGRPLAQVFDDLAGFIGAD--IVVAHNAGFDLHFIDRHMRAHHGLAL-QNLALCTL 162 Query: 128 SIARRK------HPSSRND----LNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 + R R+ L+++ +R+G+ R H A+ D+ + + ++ +M+ Sbjct: 163 RLCRALLLPSDPFGVGRHKGQCRLDAIAERFGLDTPQR--HTAIGDALVTALIFQRMLA 219 >gi|56413202|ref|YP_150277.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362128|ref|YP_002141765.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127459|gb|AAV76965.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093605|emb|CAR59069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 232 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 23/169 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + D ET GL I+EI +V+++D + N + P+ R +P+A+ +H IT+ + Sbjct: 4 IIDTETCGLQGG---IVEIASVDVIDGNIVNPMSH-LIRPD-RLITPQAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + P P I T+ ++ Sbjct: 59 ADKPWIEDVIP-----LYYGSEWYVAHNASFDRRVL----------PELPGEWICTMKLS 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMMV 176 RR P + +L K +++ H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMR 152 >gi|46446795|ref|YP_008160.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia amoebophila UWE25] gi|46400436|emb|CAF23885.1| putative DNA polymerase III, epsilon chain, mutD [Candidatus Protochlamydia amoebophila UWE25] Length = 216 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 17/200 (8%) Query: 26 IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85 +IEI A + + R F+ F+ P G PE+ +H ITDE + + SF+ + +EF + Sbjct: 1 MIEIAAYDPVQN----RRFEKFVHP-GFPIPPESTAIHHITDEMVANAGSFADVGAEFVE 55 Query: 86 FFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNS 143 F + IAHN FD+ F+ E +R + +D+L ARR R+ L Sbjct: 56 FCAGE-VVLIAHNNDNFDLHFLRHEFERNQLILPTHWKFLDSLKWARRYRSDLPRHTLQF 114 Query: 144 LCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNI 203 L + YGIT ++ H AL D +L V+ M+ + + + + ++ Sbjct: 115 LREIYGITANN--AHRALDDVIVLERVFRSMV-------DDLEIQDVFDLLNRPRAIQHM 165 Query: 204 SLLKRDKPLFTRITKEELDE 223 K +I K + Sbjct: 166 PFGKHQGQPLNKIPKNYISW 185 >gi|289550389|ref|YP_003471293.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01] gi|315660145|ref|ZP_07913002.1| exonuclease [Staphylococcus lugdunensis M23590] gi|289179921|gb|ADC87166.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01] gi|315494826|gb|EFU83164.1| exonuclease [Staphylococcus lugdunensis M23590] Length = 186 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 10/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M N + D ET + K I +G V+++D T +F + P S + + Sbjct: 1 MPLTNNA-FVALDFETA--NGKRTSICSVGMVKVIDNQIT-ESFHTLINPQDY-FSKKNI 55 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGI E + P F +F F N +AHNA FD+ ++ L++ D Sbjct: 56 NVHGINPEDVIHAPQFDYVFPYMLQFIA--NLPVVAHNAAFDMNVLHQSLKQAGIITPDL 113 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + +A+R + R L + Y + H AL D+ + + +++ Sbjct: 114 -TYFCSYQLAKRTIDAPRYGLKHMMDFYNLDF--HGHHDALNDAKACAMITFRLL 165 >gi|94990039|ref|YP_598139.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS10270] gi|94543547|gb|ABF33595.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes MGAS10270] Length = 833 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + L + P Sbjct: 72 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ P + +L+ L ++ I ++ H A+ D+ + ++++++ Sbjct: 130 --RVDTVELAQLFFPRFEKYNLSHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181 >gi|149194243|ref|ZP_01871340.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus TB-2] gi|149135418|gb|EDM23897.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus TB-2] Length = 248 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 8/172 (4%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 NK + D+E K +IIEIGAV+L + + F + + K+ G Sbjct: 62 NKSEYTILDLEVNNSKPKEGQIIEIGAVKLKNLVPIDE-FSFLI--YAKDIPRYVTKVTG 118 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I ++ LK++ S I +F F ++ +AH A FD F+ + ++ + L + + Sbjct: 119 INNQMLKNEKSQKEILEKFRLFLG--DSVIVAHAADFDFNFLAKQFEKEDLGYLL-NPHL 175 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 T+++A++ ++R L L + + H AL D+ + V++K + Sbjct: 176 CTITLAKKTLKANRYGLKYLKEELNLP--EEIDHRALGDARTTTRVFLKSLE 225 >gi|126665981|ref|ZP_01736961.1| ribonuclease T [Marinobacter sp. ELB17] gi|126629303|gb|EAZ99920.1| ribonuclease T [Marinobacter sp. ELB17] Length = 214 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNSP 57 R +V D+ET G + D ++EI AV + T+ + P G Sbjct: 14 RFRGFLPVVVDVETAGFNPAKDALLEIAAVMVTMDENGFLHRGETYLQQIDPFEGANFEQ 73 Query: 58 EALKLHGITDEF-LKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAE 109 +L GI ++ SE F+ + A + HNA FD F+ A Sbjct: 74 SSLDFTGIDPWDPEREAVPEREGLSEIFSPIRKAMKAFDCKRAVLVGHNATFDHNFVFAA 133 Query: 110 LQR--INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +R I ++P P DT ++A + L CK I + H A D+ Sbjct: 134 SERADIKRNPFHPFSTFDTATLAGLAY--GHTVLAQACKLARIPFDSKEAHSAAYDAEKT 191 Query: 168 SDVYIKMMVGGSQIN 182 +D++ ++ ++ Sbjct: 192 ADLFCSIVNRWQELG 206 >gi|15674717|ref|NP_268891.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes M1 GAS] gi|13621839|gb|AAK33612.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS] Length = 833 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + L + P Sbjct: 72 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ P + +L+ L ++ I ++ H A+ D+ + ++++++ Sbjct: 130 --RVDTVELAQLFFPRFEKYNLSHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181 >gi|71903180|ref|YP_279983.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS6180] gi|71802275|gb|AAX71628.1| ATP-dependent helicase [Streptococcus pyogenes MGAS6180] Length = 833 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + L + P Sbjct: 72 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ P + +L+ L ++ I ++ H A+ D+ + ++++++ Sbjct: 130 --RVDTVELAQLFFPRFEKYNLSHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181 >gi|300717064|ref|YP_003741867.1| exodeoxyribonuclease X [Erwinia billingiae Eb661] gi|299062900|emb|CAX60020.1| Exodeoxyribonuclease X [Erwinia billingiae Eb661] Length = 221 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+E+ +V+++D N +CP+ R SP A+ +H IT+ + Sbjct: 4 VIDTETCGLQGG---IVEVASVDVIDGKIVN-PMSDLICPD-RPISPHAMAIHRITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + + ++AHNA FD + P I T+++A Sbjct: 59 ADKPPIEHAIGRYH-----GSPYYVAHNASFDRRML----------PEMHGEWICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMM 175 R P + +L + + ++ H AL D ++ + + I++M Sbjct: 104 RGLWPGIKYSNQALRETLKLEVTPPADLHAHRALYDCYVTAALLIRIM 151 >gi|71910349|ref|YP_281899.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS5005] gi|71853131|gb|AAZ51154.1| ATP-dependent helicase [Streptococcus pyogenes MGAS5005] Length = 819 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 1 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 57 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + L + P Sbjct: 58 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 115 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ P + +L+ L ++ I ++ H A+ D+ + ++++++ Sbjct: 116 --RVDTVELAQLFFPRFEKYNLSHLSRQLNIDLA--EAHTAIADARATAILFLRLL 167 >gi|33519827|ref|NP_878659.1| ribonuclease T [Candidatus Blochmannia floridanus] gi|54036331|sp|Q7VR55|RNT_BLOFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T; Short=RNase T gi|33504172|emb|CAD83434.1| ribonuclease T [Candidatus Blochmannia floridanus] Length = 223 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 18/196 (9%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC-PNGRKNSP 57 R +V D+ET+GL++ + ++EI + L + + + G P Sbjct: 13 RFRGFYPVVIDVETSGLNASTNALLEIATITLKMNEDGWLHVDNMLHFHIKSFPGAILQP 72 Query: 58 EALKLHGIT-DEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAE 109 EAL L+ I + L+ + E + + A +AHNA FD F+ A Sbjct: 73 EALALNKINPNSPLRFAVTEQEALVEIFKMVHVGIKAQQCNKAIIVAHNASFDHSFLMAA 132 Query: 110 LQRINK---DPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 +R N +P P DT +++ + L+ C+ GI H AL D+ Sbjct: 133 TERTNNIQDNPFHPFVTFDTAALSGLVF--GQTVLSKACEYAGIIFDKNKAHSALYDAEK 190 Query: 167 LSDVYIKMMVGGSQIN 182 + ++ ++ ++ Sbjct: 191 TAILFCTLVNAWKKLG 206 >gi|210135714|ref|YP_002302153.1| DNA polymerase III subunit epsilon [Helicobacter pylori P12] gi|210133682|gb|ACJ08673.1| DNA polymerase III epsilon subunit [Helicobacter pylori P12] Length = 323 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 85/217 (39%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 167 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 168 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 224 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G I H A D+ ++ ++ I+ Sbjct: 225 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 282 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + ++T P SL +R K L I Sbjct: 283 FSKCANTLIKRPPRSRHQETPPPFSLFERTKGLLNII 319 >gi|317013348|gb|ADU83956.1| DNA polymerase III subunit epsilon [Helicobacter pylori Lithuania75] Length = 287 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 56/217 (25%), Positives = 86/217 (39%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPIKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G I H A D+ ++ ++ I+ Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + ++T P SL +R K LF I Sbjct: 247 FSKCANTLIKRPPKARHQETPPPFSLFERTKGLFNII 283 >gi|21909995|ref|NP_664263.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS315] gi|28896308|ref|NP_802658.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes SSI-1] gi|21904184|gb|AAM79066.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes MGAS315] gi|28811559|dbj|BAC64491.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1] Length = 833 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIIDSYETDVNPH-ESLDEHIV 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + L + P Sbjct: 72 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ P + +L+ L ++ I ++ H A+ D+ + ++++++ Sbjct: 130 --RVDTVELAQLFFPRFEKYNLSHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181 >gi|57237506|ref|YP_178520.1| DNA polymerase III subunit epsilon [Campylobacter jejuni RM1221] gi|57166310|gb|AAW35089.1| exonuclease, DNA polymerase III, epsilon subunit family [Campylobacter jejuni RM1221] Length = 233 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 7/147 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE+TG SK I+EIGAV++ + + R FQ F+ ++ +L GIT E Sbjct: 49 FCIVDIESTGGVSKG-EILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYE 104 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ PS + + S+F F +++ ++AHN +FD FI+ L L +R I T+ Sbjct: 105 MVENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 161 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155 A+ S + L L + G+ +H Sbjct: 162 FAQCCIESPKYKLEVLKEFLGVENTHH 188 >gi|325956898|ref|YP_004292310.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC] gi|325333463|gb|ADZ07371.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC] gi|327183677|gb|AEA32124.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1118] Length = 926 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 9/172 (5%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K V D+ETTG + II+ G ++ K +T+ + P+ R+ + L G Sbjct: 7 KDIFAVVDLETTGTQRENGHHIIQFGC-AIIKNLKVVKTYSFMINPH-REIPQSVVNLTG 64 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I++ ++ + F + QN ++AHN FD+ F+N EL + D L ++ I Sbjct: 65 ISNGDVQKQKDFDFYAPKIVKIL--QNTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKAI 121 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+ +A+ P+ L+ L + I H + H A D++ + + IK++ Sbjct: 122 DTVELAKIAFPTLPSYKLSDLTAQLEIK--HLNPHKADSDAYGTAILLIKII 171 >gi|315038483|ref|YP_004032051.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112] gi|312276616|gb|ADQ59256.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112] Length = 926 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 9/172 (5%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K V D+ETTG + II+ G ++ K +T+ + P+ R+ + L G Sbjct: 7 KDIFAVVDLETTGTQRENGHHIIQFGC-AIIKNLKVVKTYSFMINPH-REIPQSVVNLTG 64 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I++ ++ + F + QN ++AHN FD+ F+N EL + D L ++ I Sbjct: 65 ISNGDVQKQKDFDFYAPKIVKIL--QNTVFVAHNVDFDLPFLNYELTQHGYDAL-TNKAI 121 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 DT+ +A+ P+ L+ L + I H + H A D++ + + IK++ Sbjct: 122 DTVELAKIAFPTLPSYKLSDLTAQLEIK--HLNPHKADSDAYGTAILLIKII 171 >gi|282879820|ref|ZP_06288549.1| exonuclease [Prevotella timonensis CRIS 5C-B1] gi|281306330|gb|EFA98361.1| exonuclease [Prevotella timonensis CRIS 5C-B1] Length = 286 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 9/175 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K I+FD+ETTGLD NDRII+I +++L + R +F+ P + E + Sbjct: 1 MKLNLKKPLIIFDLETTGLDLVNDRIIQISYIKVLPNGEEERE-SIFVNPE-KPIPHEVI 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-LD 119 +L GIT+E + + P F I + + F + + N FDV + E R D Sbjct: 59 ELTGITNEDVANAPKFKEIAAHLQNQFKDSDIAGFNSN-HFDVPLLAEEFLRAGIDFDFS 117 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI 172 +ID +I H R +L + K Y G + H A D+ V + Sbjct: 118 KCNLIDVQTI---FHKMERRNLAAAYKFYCGRKMEEDFQAHKANEDAEATYRVLL 169 >gi|308183650|ref|YP_003927777.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4] gi|308065835|gb|ADO07727.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4] Length = 287 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 56/217 (25%), Positives = 86/217 (39%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G I H A D+ ++ ++ I+ Sbjct: 189 KRTILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + ++T P SL +R K LF I Sbjct: 247 FSKCANTLIKRPPRARHQETPPPFSLFERTKGLFNII 283 >gi|240173340|ref|ZP_04751998.1| DNA polymerase III subunit epsilon [Mycobacterium kansasii ATCC 12478] Length = 329 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 25/214 (11%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 V D+ET+G RII I + L + ++ L P P + +HG+T Sbjct: 16 WAVIDVETSGFRPGQARIISIAVLGLDADGRVEQSLVSLLNPG---VDPGSTHIHGLTAG 72 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 L+D+P F+ I + + + +AHN FD F+ AE + L ++ T+ Sbjct: 73 MLEDQPQFADIVGDVVELL--RGRTLVAHNVAFDYAFLAAEAEMA-GAELPVDTVMCTVE 129 Query: 129 IARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 ++RR N L +L +G+ H A D+ +L+ V + Sbjct: 130 LSRRLELGVDNLRLETLAAHWGVI--QERPHDAFDDARVLTGVLAAALERA--------- 178 Query: 188 NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEEL 221 +E + +P + +R P R+T +EL Sbjct: 179 ------REREVWLPVHPVTRRRWP-NGRVTHDEL 205 >gi|205355328|ref|ZP_03222099.1| exonuclease possibly DNA polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8421] gi|205346562|gb|EDZ33194.1| exonuclease possibly DNA polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni CG8421] Length = 233 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 7/147 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE+TG SK I+EIGAV++ + + R FQ F+ ++ +L GIT E Sbjct: 49 FCIVDIESTGGVSKG-EILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYE 104 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ PS + + S+F F +++ ++AHN +FD FI+ L L +R I T+ Sbjct: 105 MVENAPSLTKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 161 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155 A+ S + L L + G+ +H Sbjct: 162 FAQCCIESPKYKLEVLKEFLGVENTHH 188 >gi|297380606|gb|ADI35493.1| DNA polymerase III polC-type [Helicobacter pylori v225d] Length = 287 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G I H A D+ ++ ++ I+ Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + ++T+P SL +R K L I Sbjct: 247 FSKCANTLIKRPPRARHQETLPPFSLFERTKGLLNII 283 >gi|305681196|ref|ZP_07404003.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] gi|305659401|gb|EFM48901.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] Length = 444 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 84/212 (39%), Gaps = 13/212 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE---ALKLHGI 65 + D+ET ++ I +IG V + D + + +LC +++HGI Sbjct: 101 FVGVDVETA--NADWGSICQIGVVRVTDGMQVDS--HEWLCRPPAGIDHFDEGNIRIHGI 156 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 T + + D P F+++F E + +Q +AHNA+FD+ + P+ + Sbjct: 157 TPDMVTDAPDFAAVFPEVVAYVADQ--VLVAHNAQFDLTAFSRACHATG-TPVPHWKFAC 213 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 +L+ +R + + L + + G+ + + H A+ D+ + +++++ + Sbjct: 214 SLAASRAAKLGITSHRLPVVAQHLGVELDNH--HDAVADARACAGIFVQLALRAHATGDI 271 Query: 185 FKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F I + + P T Sbjct: 272 ETVFTTLGFSLGDLNTERIYPVLSNPPTVTVA 303 >gi|304413849|ref|ZP_07395266.1| ribonuclease T [Candidatus Regiella insecticola LSR1] gi|304283569|gb|EFL91964.1| ribonuclease T [Candidatus Regiella insecticola LSR1] Length = 210 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 18/190 (9%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVE-LLDYSK---TNRTFQVFLCP-NGRKNSPEALKLH 63 +V D+ET+G D++ + ++EI AV ++ T + P G ++L + Sbjct: 19 PVVIDVETSGFDAQTNALLEIAAVTLQMNDGGWLHPAETLHFHVAPFEGAILEQKSLSFN 78 Query: 64 GIT-DEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVGFINAELQRIN- 114 GI D L+ S ++ ++ A +AHNA FD F+ A +R Sbjct: 79 GINLDNPLRGAISEHKALQTIFETVKKRMKGEGCTRAVVVAHNATFDHRFVMAAAERTGL 138 Query: 115 --KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 +P DT +++ + L C GI H AL D+ + ++ Sbjct: 139 IKHNPFHSFVTFDTAALSALVL--GQTVLAKACLEAGIDFESSQAHSALYDTKQTAKLFC 196 Query: 173 KMMVGGSQIN 182 +++ ++ Sbjct: 197 ELVNRWKRLG 206 >gi|260887789|ref|ZP_05899052.1| exonuclease [Selenomonas sputigena ATCC 35185] gi|260862465|gb|EEX76965.1| exonuclease [Selenomonas sputigena ATCC 35185] Length = 202 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 12/168 (7%) Query: 7 MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M I D ET TG + + VE+ D + + P G + + +HGI Sbjct: 18 MNYIAIDFETATG---SMNSACSVATVEVRDGQL-KEGWTTLIQPPGLRFDSFNIGIHGI 73 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + + D P+F+ ++ E + +AHNA FD+G + A L N+ R Sbjct: 74 SPKDVTDAPTFAEVWEELKERLA--GKIVVAHNASFDMGVLKASLL-ANRLQAPYFRTCC 130 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 T+ IAR+ P+ + LN++ I H H AL D+ + + + Sbjct: 131 TVRIARKVWPALDDHKLNTVGAHLNINFRH---HRALDDARTCAAILL 175 >gi|255974861|ref|ZP_05425447.1| exonuclease [Enterococcus faecalis T2] gi|256763360|ref|ZP_05503940.1| exonuclease [Enterococcus faecalis T3] gi|255967733|gb|EET98355.1| exonuclease [Enterococcus faecalis T2] gi|256684611|gb|EEU24306.1| exonuclease [Enterococcus faecalis T3] Length = 183 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 20/184 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA---LKLH 63 M FD ET I V++ + + F + P P ++H Sbjct: 7 MNFYAFDFETA--SYDKHSACSIAIVKVENSRIVDE-FYTLIKPET----PFFWRNTQIH 59 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + + P F ++ + + N +AHNA FD + L + Sbjct: 60 GIHESDVVNAPKFPEVWQQI-QHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQ-PNYLS 117 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + T+ +R+ P + LN++C+ IT+++ H AL DS +++ + + Sbjct: 118 LCTVKTSRKLFPEFPNHKLNTVCENLNITLNNH--HDALEDSRACAEILL-----QQEQR 170 Query: 183 FGFK 186 FG + Sbjct: 171 FGVE 174 >gi|315038988|ref|YP_004032556.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112] gi|325957414|ref|YP_004292826.1| DNA polymerase III [Lactobacillus acidophilus 30SC] gi|312277121|gb|ADQ59761.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112] gi|325333979|gb|ADZ07887.1| DNA polymerase III [Lactobacillus acidophilus 30SC] gi|327184122|gb|AEA32569.1| DNA polymerase III [Lactobacillus amylovorus GRL 1118] Length = 318 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 7/165 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIETTGL DRI E+GAV++ + ++ + P K KL+GIT+E Sbjct: 33 YTMLDIETTGLSPYRDRITELGAVKVRNGQIVDQYTNLIKFPKNNKVPAFITKLNGITEE 92 Query: 69 F-LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + + EF +F ++ I +N FD+ F+ Q+ P+ + +D L Sbjct: 93 QIVNEGIPAEQAIKEFREFIDDD--IIIGYNVNFDLNFLYDLSQKYKL-PILNNDYVDVL 149 Query: 128 SIARRKHPSSRND-LNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +AR +P R++ L +R GI + +H L DS VY Sbjct: 150 RLARAYYPRERHNRLIDCMQRAGI--AQVEEHHGLADSLDTIKVY 192 >gi|124516571|gb|EAY58079.1| DNA polymerase III, epsilon subunit [Leptospirillum rubarum] Length = 265 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 11/173 (6%) Query: 7 MRKIVFDIETTGL-DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE-ALKLHG 64 M+ D+ETTGL RIIE+G + +T + G P+ K++G Sbjct: 1 MKVTFLDVETTGLLRDSRARIIELGFSSWENGKLLRKT-STLIK--GADIVPDNISKING 57 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT E LKD P F ++ + Q + +AHN FDVG +N EL ++ PL + I Sbjct: 58 ITTEMLKDAPRFEEVWKSIKG--DIQGSLLVAHNLAFDVGMVNRELILADRIPLG-NMGI 114 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 DTL ++R+ P S L + K GI + H A+ D L + ++ Sbjct: 115 DTLPLSRKMLPELSSYRLGEIAKHMGILNEN--PHRAMGDLETLEKIVSNLLG 165 >gi|188997445|ref|YP_001931696.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium sp. YO3AOP1] gi|188932512|gb|ACD67142.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium sp. YO3AOP1] Length = 203 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 7/170 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 + FD ETTGL+ K D I+ I AV++ D N F V + P+ R+ + + +K+HG+ Sbjct: 34 YVAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVKPD-REINEDVIKIHGLRK 92 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI-IDT 126 + L+ F F + + + +FDV IN ++++ L +I + Sbjct: 93 KDLESGIPIEEAVDRFVHFIGSR--PLVGYYLEFDVAMINKYFKKLSGTTLPNKQIEVSA 150 Query: 127 LSIARR--KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L + P DL + I KH AL D+ + + +++K+ Sbjct: 151 LYYDYKIGLIPQGFVDLRFDSILKDLDIPTFGKHDALNDAIMTALIFLKL 200 >gi|330838686|ref|YP_004413266.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena ATCC 35185] gi|329746450|gb|AEB99806.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena ATCC 35185] Length = 186 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 12/168 (7%) Query: 7 MRKIVFDIET-TGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 M I D ET TG + + VE+ D + + P G + + +HGI Sbjct: 2 MNYIAIDFETATG---SMNSACSVATVEVRDGQL-KEGWTTLIQPPGLRFDSFNIGIHGI 57 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 + + + D P+F+ ++ E + +AHNA FD+G + A L N+ R Sbjct: 58 SPKDVTDAPTFAEVWEELKERLA--GKIVVAHNASFDMGVLKASLL-ANRLQAPYFRTCC 114 Query: 126 TLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 T+ IAR+ P+ + LN++ I H H AL D+ + + + Sbjct: 115 TVRIARKVWPALDDHKLNTVGAHLNINFRH---HRALDDARTCAAILL 159 >gi|326800451|ref|YP_004318270.1| exonuclease RNase T and DNA polymerase III [Sphingobacterium sp. 21] gi|326551215|gb|ADZ79600.1| Exonuclease RNase T and DNA polymerase III [Sphingobacterium sp. 21] Length = 330 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 11/223 (4%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNGRKNSPEA 59 MI K FD+ETTG++ +DRI+EI ++ + D S+ +T + + P + Sbjct: 1 MILNLKRPLAFFDLETTGVNVASDRIVEISILKAMPDGSEQVKTMR--INPE-MPIPLSS 57 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPL 118 LHG+ DE +KD P+F + E DF ++ + +N+ FD+ + E R + Sbjct: 58 SLLHGVYDEDIKDAPTFKQVAQEIADFL--EDTDLAGYNSNKFDIPVLMEEFLRAGINFD 115 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +R + + H + L + K Y + + H A D +V + + Sbjct: 116 IENRKF--VDVQNIFHQMEQRTLKAAYKFY-CDRTLENAHSAEADVRATYEVLLAQVQRY 172 Query: 179 SQINFGFKT-NEDRFFKEEKKTVPNISLLKRDKPLFTRITKEE 220 + + K+ N+ K + + + L R RI +E Sbjct: 173 DGVEWEDKSGNKSIPVKNDVDALHRFTNLNRPVDFAGRIIYDE 215 >gi|297559415|ref|YP_003678389.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843863|gb|ADH65883.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 339 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 10/217 (4%) Query: 2 IRKNKMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 +R + V D+ETTGL+ + RI+EI V + K F + P Sbjct: 16 MRAADLEYAVLDMETTGLEPREGARIVEIAVVRVRGDGKFVEEFSTLIDPRA---PVGGR 72 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 + HGI + P+ + + + + A + HN F+ F+ +EL Sbjct: 73 EFHGIGEGDTVGAPTAAQVVPRLTELLS--GAVVVGHNLDFEQRFLASELVPAGLP--TG 128 Query: 121 SRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG-S 179 + TL R + R L R H AL D+ + + +M+ Sbjct: 129 QAGLCTLRALRSQVELERYSLPKASHRLSGDWPTGQ-HTALGDARACAKLLAEMLTNAPG 187 Query: 180 QINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRI 216 ++ +G + + + R KP + + Sbjct: 188 ELRYGGPAPKRLTVPDPVPGPVGAAGPVRWKPRTSSV 224 >gi|239631428|ref|ZP_04674459.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525893|gb|EEQ64894.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 931 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 10/177 (5%) Query: 1 MIRKN-KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M + N + V D+ETTG K DR+I+ G L+ + K +T + P+ R Sbjct: 1 MFKMNAETIFAVVDLETTGTSVKDGDRMIQFGC-ALMQHGKIIQTISQLVNPD-RSVPVA 58 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 +L G+ L P F I + ++AHN FD F+NAE +R+ L Sbjct: 59 IQRLTGLDPNRLVAAPYFEEIAKTLHQLL--TDTVFVAHNVNFDYPFLNAEFERVGLPKL 116 Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + IDT+ +A+ P S L L I H + H A D+ + + ++ Sbjct: 117 QLAA-IDTVELAQILLPEISSFRLPDLTSYLQIE--HDNPHQADSDAISTAKLLRQL 170 >gi|261840222|gb|ACX99987.1| DNA polymerase III subunit epsilon [Helicobacter pylori 52] Length = 323 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYITELTGIAYEDT 167 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 168 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 224 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G I H A D+ ++ ++ I+ Sbjct: 225 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 282 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + ++T+ L +R K LF I Sbjct: 283 FSKCANTLIKRPPRARHQETLAPFPLFERTKGLFNII 319 >gi|256421379|ref|YP_003122032.1| exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis DSM 2588] gi|256036287|gb|ACU59831.1| Exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis DSM 2588] Length = 257 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 12/188 (6%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCP--NGRKNSPEALKLH 63 K V D+ETTG + DRIIEI +++ +++ Q + G P + +H Sbjct: 7 KRPLAVIDLETTGTNVATDRIIEIAIIKVF----PDKSVQTKVKRIHPGMPIPPASTAIH 62 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSR 122 GI+DE +KD P+F +E + +N + +N +FD+ + E R D R Sbjct: 63 GISDEDIKDCPTFKQCANELRQYM--ENCDLAGYNSNRFDIPLLVEEFLRAGLDFDTKDR 120 Query: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + + + H + L++ K Y + H A D+ ++ + Q+ Sbjct: 121 RF--IDVQKIFHLMEKRTLSAAYKFY-CDKDLTNAHSAEADALATYEILEAQLSRYEQLQ 177 Query: 183 FGFKTNED 190 + Sbjct: 178 AEVAPLAE 185 >gi|300727971|ref|ZP_07061349.1| exonuclease [Prevotella bryantii B14] gi|299774813|gb|EFI71427.1| exonuclease [Prevotella bryantii B14] Length = 279 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 12/176 (6%) Query: 2 IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N + I+FD+ETTGLD NDRII+I ++++ + R + P + Sbjct: 1 MKLNLTKPLIIFDLETTGLDMVNDRIIQISYIKVMPNGEEKRG-DELVNPE-KPIPAFVS 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118 L GIT+E +K+ P+F I ++ D F + ++ N +FD+ + E R D Sbjct: 59 DLTGITNEQVKNAPTFKEIGTKLADIF--KGCDFAGFNSNRFDIPLLCEEFLRAGIDFDF 116 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYI 172 R+ID +I H + +L + K Y G + H A D+ V Sbjct: 117 SKCRLIDAQTI---FHKMEKRNLAAAYKFYTGHKMEDDFEAHRADQDTEATYRVLQ 169 >gi|308234071|ref|ZP_07664808.1| DNA polymerase III, epsilon subunit [Atopobium vaginae DSM 15829] Length = 1008 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 12/170 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL KND++ +I AV+L + S F F+ P+ R KL I Sbjct: 50 IVALDTETTGLSHKNDQLTQIAAVKLEEGS-VADEFTTFVNPS-RPIPHNIEKLTNIYSV 107 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+ + + DF +AHNA FD FI A D IDTL+ Sbjct: 108 DVEHAPTPQTAVARLADFVELD--PILAHNASFDRAFIEA----AQNDTCVSDTWIDTLA 161 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++R P+ + + L L +G H A D L+ V+ ++ G Sbjct: 162 LSRIAFPALTSHKLQDLAYIFGCE---SVTHRANDDCTALAGVWHYILAG 208 >gi|257867351|ref|ZP_05647004.1| exonuclease [Enterococcus casseliflavus EC30] gi|257873684|ref|ZP_05653337.1| exonuclease [Enterococcus casseliflavus EC10] gi|257877427|ref|ZP_05657080.1| exonuclease [Enterococcus casseliflavus EC20] gi|257801407|gb|EEV30337.1| exonuclease [Enterococcus casseliflavus EC30] gi|257807848|gb|EEV36670.1| exonuclease [Enterococcus casseliflavus EC10] gi|257811593|gb|EEV40413.1| exonuclease [Enterococcus casseliflavus EC20] Length = 180 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 9/168 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + + + V + D + + P + +++HGI Sbjct: 4 MNFIAMDFETA--NYQKHSACSLALVMVQDSKIVGE-YYTLIQPETEFF-WKNIQIHGIR 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +++ P F ++ + ++ + N+ +AHNA FD G + L + T Sbjct: 60 PEDVQEAPKFPDVWKQIQQYY-QLNSLIVAHNAGFDTGVLAGCLDYYGLSQ-PNYLSLCT 117 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +R+ +P + + LN++C++ I + + H AL DS + + ++ Sbjct: 118 VRTSRKLYPEFTNHKLNTVCEQLQIPLLNH--HDALEDSRACAQILLR 163 >gi|328943468|ref|ZP_08240933.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829] gi|327491437|gb|EGF23211.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829] Length = 1011 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 12/170 (7%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ETTGL KND++ +I AV+L + S F F+ P+ R KL I Sbjct: 53 IVALDTETTGLSHKNDQLTQIAAVKLEEGS-VADEFTTFVNPS-RPIPHNIEKLTNIYSV 110 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+ + + DF +AHNA FD FI A D IDTL+ Sbjct: 111 DVEHAPTPQTAVARLADFVELD--PILAHNASFDRAFIEA----AQNDTCVSDTWIDTLA 164 Query: 129 IARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 ++R P+ + + L L +G H A D L+ V+ ++ G Sbjct: 165 LSRIAFPALTSHKLQDLAYIFGCE---SVTHRANDDCTALAGVWHYILAG 211 >gi|259046854|ref|ZP_05737255.1| DnaQ family exonuclease/DinG family helicase [Granulicatella adiacens ATCC 49175] gi|259036477|gb|EEW37732.1| DnaQ family exonuclease/DinG family helicase [Granulicatella adiacens ATCC 49175] Length = 875 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 11/185 (5%) Query: 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 + V D+ETTG + DRI + G + D+ K + + P + E L G+T Sbjct: 4 KYAVIDLETTGPKYEQGDRIFQFGCTLITDH-KIVEHITLNINPE-QSIPFEIQLLTGVT 61 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++ P F + ++ + +AHN FD FI L+ L+ IDT Sbjct: 62 NADVEKAPYFDEVAMNIYNLL--EGRTLVAHNVGFDGPFIITALKEALGIELEV-PFIDT 118 Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 + +A+ +PS+ L+ L I H H A D+ + ++ +++ +F Sbjct: 119 VQLAQICYPSAISYRLSDLTNMLKIP--HTQVHTAGSDARATAQLF--LILQEKIRSFSK 174 Query: 186 KTNED 190 T E Sbjct: 175 VTLEQ 179 >gi|86142317|ref|ZP_01060827.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella blandensis MED217] gi|85831069|gb|EAQ49526.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella blandensis MED217] Length = 257 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 9/172 (5%) Query: 2 IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + N R I FD+ETTG++ DRI+EI +++L K + +L PE Sbjct: 1 MNLNLTRPICFFDLETTGINVAKDRIVEISVLKVLPNGKEEK--HTWLVNPTIPIPPETT 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 +HGI DE + DKP+F + +E + + + N +FD+ + E+ R D Sbjct: 59 AVHGIKDEDVADKPTFKELANEIHNLIKDSDLAGFNSN-RFDIPLLAEEMLRAEVDFDMK 117 Query: 121 SRI-IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R ID +I H + L++ K Y + H A D+ +V Sbjct: 118 NRNAIDVQTI---FHKMEQRTLSAAYKFY-CDQTLEDAHSAEADTIATYEVL 165 >gi|319938082|ref|ZP_08012482.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1] gi|319806988|gb|EFW03627.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1] Length = 221 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 14/173 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 I++D+ETTGL +K D IIEIGA+ + D + + +F P G + +++ GIT++ Sbjct: 40 YIMYDLETTGLTNK-DHIIEIGAIYVEDNTIVD-SFSALCNP-GIFITQRIVEITGITNK 96 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEW-IAHN-AKFDVGFINAELQRINKDPLDPSRIIDT 126 L DKP + +F ++ N + + N FD + +R + R +DT Sbjct: 97 MLSDKPPEYDVVKQFVEWCNSKETSLAVGQNINSFDNRMLKVATKRFKLN-FPFERSLDT 155 Query: 127 LSIARRKHPSSR-----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L +A + N + L K YGI H A+ D L ++ + Sbjct: 156 LKMAINMKLKEKGLVASNQQSDLGKLYGIEY---VAHRAINDVEALYQIFEHL 205 >gi|239638049|ref|ZP_04679008.1| exonuclease [Staphylococcus warneri L37603] gi|239596332|gb|EEQ78870.1| exonuclease [Staphylococcus warneri L37603] Length = 184 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + K I +G V+++D T TF + PN S + + +HGI E Sbjct: 6 FVALDFETA--NGKRTSICSVGMVKVIDNQIT-ETFHTLVNPNDY-FSEQNINVHGIYPE 61 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 + P+FS +F F ++ +AHNA FD+ ++ +Q I + + Sbjct: 62 DVASSPNFSYVFPYMMQFIDQ--LPVVAHNAAFDMNVLHQSIQDIGLET-PHLTYFCSYQ 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +A+R S R L + Y + H AL D+ + + +++ Sbjct: 119 LAKRTVQSHRYGLKHMMDFYQLDF--HGHHDALNDAKACAMITYRLL 163 >gi|308234672|ref|ZP_07665409.1| CRISPR-associated endoribonuclease Cas2 [Gardnerella vaginalis ATCC 14018] gi|311114561|ref|YP_003985782.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Gardnerella vaginalis ATCC 14019] gi|310946055|gb|ADP38759.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein [Gardnerella vaginalis ATCC 14019] Length = 359 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 20/195 (10%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLC---------PNG 52 I K +V D ETTGL+SK D+IIEIGAV+ +D FQ + Sbjct: 171 IGKTSKNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKI--EEFQKLININCDSVSNFNKN 228 Query: 53 RKNSPEALKLHGITDEFLKD-KPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQ 111 E ++L GIT L+ EF DF + + +N FD+GF N+ L Sbjct: 229 NFIPNEIIELTGITSNMLESYGVGLDLALREFIDFVGK--LPLLGYNVSFDIGFFNSALF 286 Query: 112 RINKD---PLDPSRIIDTLSIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLL 167 +++ +++ID + +N L ++ Y I S H ALLD+ L Sbjct: 287 SLDEKLSSAFSVNKVIDISRFVKHDRRFLKNYQLKTVLHEYNI--SESVPHRALLDARLT 344 Query: 168 SDVYIKMMVGGSQIN 182 + + + + ++ Sbjct: 345 ARLVLNLTELLKFLS 359 >gi|29377213|ref|NP_816367.1| exonuclease [Enterococcus faecalis V583] gi|227554221|ref|ZP_03984268.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22] gi|229549147|ref|ZP_04437872.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200] gi|255971865|ref|ZP_05422451.1| exonuclease [Enterococcus faecalis T1] gi|256957963|ref|ZP_05562134.1| exonuclease [Enterococcus faecalis DS5] gi|256961017|ref|ZP_05565188.1| exonuclease [Enterococcus faecalis Merz96] gi|257079901|ref|ZP_05574262.1| exonuclease [Enterococcus faecalis JH1] gi|257087703|ref|ZP_05582064.1| exonuclease [Enterococcus faecalis D6] gi|293384593|ref|ZP_06630459.1| exonuclease [Enterococcus faecalis R712] gi|293386822|ref|ZP_06631393.1| exonuclease [Enterococcus faecalis S613] gi|294779917|ref|ZP_06745299.1| exonuclease [Enterococcus faecalis PC1.1] gi|300861254|ref|ZP_07107341.1| exonuclease [Enterococcus faecalis TUSoD Ef11] gi|307269234|ref|ZP_07550588.1| exonuclease [Enterococcus faecalis TX4248] gi|307276973|ref|ZP_07558083.1| exonuclease [Enterococcus faecalis TX2134] gi|312906419|ref|ZP_07765427.1| exonuclease [Enterococcus faecalis DAPTO 512] gi|312951911|ref|ZP_07770799.1| exonuclease [Enterococcus faecalis TX0102] gi|312979422|ref|ZP_07791110.1| exonuclease [Enterococcus faecalis DAPTO 516] gi|29344679|gb|AAO82437.1| exonuclease [Enterococcus faecalis V583] gi|227176668|gb|EEI57640.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22] gi|229305701|gb|EEN71697.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200] gi|255962883|gb|EET95359.1| exonuclease [Enterococcus faecalis T1] gi|256948459|gb|EEU65091.1| exonuclease [Enterococcus faecalis DS5] gi|256951513|gb|EEU68145.1| exonuclease [Enterococcus faecalis Merz96] gi|256987931|gb|EEU75233.1| exonuclease [Enterococcus faecalis JH1] gi|256995733|gb|EEU83035.1| exonuclease [Enterococcus faecalis D6] gi|291078139|gb|EFE15503.1| exonuclease [Enterococcus faecalis R712] gi|291083825|gb|EFE20788.1| exonuclease [Enterococcus faecalis S613] gi|294453029|gb|EFG21449.1| exonuclease [Enterococcus faecalis PC1.1] gi|295113676|emb|CBL32313.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [Enterococcus sp. 7L76] gi|300850293|gb|EFK78043.1| exonuclease [Enterococcus faecalis TUSoD Ef11] gi|306506396|gb|EFM75556.1| exonuclease [Enterococcus faecalis TX2134] gi|306514453|gb|EFM83014.1| exonuclease [Enterococcus faecalis TX4248] gi|310627573|gb|EFQ10856.1| exonuclease [Enterococcus faecalis DAPTO 512] gi|310630100|gb|EFQ13383.1| exonuclease [Enterococcus faecalis TX0102] gi|311287793|gb|EFQ66349.1| exonuclease [Enterococcus faecalis DAPTO 516] gi|315025497|gb|EFT37429.1| exonuclease [Enterococcus faecalis TX2137] gi|315035108|gb|EFT47040.1| exonuclease [Enterococcus faecalis TX0027] gi|315154299|gb|EFT98315.1| exonuclease [Enterococcus faecalis TX0031] gi|315159608|gb|EFU03625.1| exonuclease [Enterococcus faecalis TX0312] gi|315162098|gb|EFU06115.1| exonuclease [Enterococcus faecalis TX0645] gi|315573774|gb|EFU85965.1| exonuclease [Enterococcus faecalis TX0309B] gi|315580288|gb|EFU92479.1| exonuclease [Enterococcus faecalis TX0309A] gi|323481659|gb|ADX81098.1| DNA polymerase III, epsilon subunit, 3'-5' exonuclease family protein [Enterococcus faecalis 62] gi|329578017|gb|EGG59432.1| exonuclease [Enterococcus faecalis TX1467] Length = 177 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 20/184 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA---LKLH 63 M FD ET I V++ + + F + P P ++H Sbjct: 1 MNFYAFDFETA--SYDKHSACSIAIVKVENSRIVDE-FYTLIKPET----PFFWRNTQIH 53 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + + P F ++ + + N +AHNA FD + L + Sbjct: 54 GIHESDVVNAPKFPEVWQQI-QHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQ-PNYLS 111 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + T+ +R+ P + LN++C+ IT+++ H AL DS +++ + + Sbjct: 112 LCTVKTSRKLFPEFPNHKLNTVCENLNITLNNH--HDALEDSRACAEILL-----QQEQR 164 Query: 183 FGFK 186 FG + Sbjct: 165 FGVE 168 >gi|255021102|ref|ZP_05293155.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] gi|254969516|gb|EET27025.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC 51756] Length = 475 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 10/174 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M ++ D+E TG + DRIIE+G + + + + + P R SP Sbjct: 1 MAQELDTTLAFIDLENTGGHLERDRIIEVGIILVAPAGEP-EVWSTLINPEIR-LSPAIS 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GI L P+F+ + + + IAH+A+ D+ F+ E +R+ + + Sbjct: 59 TLTGIDPADLAHAPTFAQVAEPLREKLAGR--LLIAHDARTDLAFLRQEWRRLGQ--VFT 114 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + ++ TL ++R P R+ L+++ +R + + R H AL D+ +++ Sbjct: 115 ADVLCTLRLSRSLFPDEKRHGLDAIIERLQLHSAGR--HRALTDAR-TVAIFLA 165 >gi|271970236|ref|YP_003344432.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270513411|gb|ACZ91689.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 189 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 11/144 (7%) Query: 12 FDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG K DRI EI V L T + + P A+ +HGIT+ + Sbjct: 2 VDVETTGFSPAKGDRICEIALVSLDADGTTVDEWHSLVDPRRGT---GAVHVHGITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + P + E W + +AHN FD+ F+ ++ + + T +A Sbjct: 59 EGAPVIEEVLDEVWQRIAGR--VLVAHNVSFDLRFL-----KVLPGSHWLTEALCTQQLA 111 Query: 131 RRKHPSSRNDLNSLCKRYGITISH 154 P + L + C+R GI S+ Sbjct: 112 PDLIPGGKWTLGACCQRAGIPFSN 135 >gi|149196822|ref|ZP_01873875.1| exonuclease [Lentisphaera araneosa HTCC2155] gi|149139932|gb|EDM28332.1| exonuclease [Lentisphaera araneosa HTCC2155] Length = 261 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 9/172 (5%) Query: 2 IRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N R IVF D+ETTGL+ DRIIEI +++ K + + + P + S EA Sbjct: 1 MKLNLQRPIVFFDLETTGLNPTEDRIIEICCIKVHPDGKRDIKTRR-VNPE-KPISSEAS 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119 ++ GITDE +KD+P+F + + FF + + +N +FD+ + E +R Sbjct: 59 EITGITDEDVKDEPTFKQMAKGIYKFF--EGCDISGYNIMRFDLRVLTEEFKRAGISF-- 114 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 + D + + R H L + + Y H A D DV Sbjct: 115 DASAHDLVDVQRIFHKKEPRTLEAALRFY-CKKDLEGAHAAENDVIATIDVL 165 >gi|227535024|ref|ZP_03965073.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187339|gb|EEI67406.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 931 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 10/177 (5%) Query: 1 MIRKN-KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M + N + V D+ETTG K DR+I+ G L+ + K +T + P+ R Sbjct: 1 MFKMNAETIFAVVDLETTGTSVKDGDRMIQFGC-ALMQHGKIIQTISQLVNPD-RSVPVA 58 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 +L G+ L P F I + ++AHN FD F+NAE +R+ L Sbjct: 59 IQRLTGLDPNRLVAAPYFEEIAKTLHQLL--TDTVFVAHNVNFDYPFLNAEFERVGLPKL 116 Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + IDT+ +A+ P S L L I H + H A D+ + + ++ Sbjct: 117 QLAA-IDTVELAQILLPEISSFRLPDLTSYLQIE--HDNPHQADSDAISTAKLLRQL 170 >gi|227550322|ref|ZP_03980371.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330] gi|227180544|gb|EEI61516.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330] Length = 201 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 9/168 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +M + D ET + + V + + + F + P +++HGI Sbjct: 24 EMNFVAMDFETANHQPYSA--CSLALVMVKNSQIVDE-FYTLIQPET-PFFWRNVQIHGI 79 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 E +++ P F ++ +F ++N +AHNA FD + L + + + Sbjct: 80 HQEDVRNAPKFPEVWQTIQPYF-QKNLLVVAHNAAFDTKVLAGCLDYYHLEQ-PNYLSLC 137 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 T+ +RR P + LN++C+ I + H H AL DS +++ + Sbjct: 138 TVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 183 >gi|257090922|ref|ZP_05585283.1| exonuclease [Enterococcus faecalis CH188] gi|312902561|ref|ZP_07761767.1| exonuclease [Enterococcus faecalis TX0635] gi|256999734|gb|EEU86254.1| exonuclease [Enterococcus faecalis CH188] gi|310634231|gb|EFQ17514.1| exonuclease [Enterococcus faecalis TX0635] gi|315168719|gb|EFU12736.1| exonuclease [Enterococcus faecalis TX1341] gi|315579629|gb|EFU91820.1| exonuclease [Enterococcus faecalis TX0630] Length = 188 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 20/184 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA---LKLH 63 M FD ET I V++ + + F + P P ++H Sbjct: 12 MNFYAFDFETA--SYDKHSACSIAIVKVENSQIVDE-FYTLIKPET----PFFWRNTQIH 64 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + + P F ++ + + N +AHNA FD + L + Sbjct: 65 GIHESDVVNAPKFPEVWQQI-QHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQ-PNYLS 122 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + T+ +R+ P + LN++C+ IT+++ H AL DS +++ + + Sbjct: 123 LCTVKTSRKLFPEFPNHKLNTVCENLNITLNNH--HDALEDSRACAEILL-----QQEQR 175 Query: 183 FGFK 186 FG + Sbjct: 176 FGVE 179 >gi|229544880|ref|ZP_04433605.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322] gi|256616762|ref|ZP_05473608.1| exonuclease [Enterococcus faecalis ATCC 4200] gi|256854034|ref|ZP_05559399.1| exonuclease [Enterococcus faecalis T8] gi|256963842|ref|ZP_05568013.1| exonuclease [Enterococcus faecalis HIP11704] gi|257081701|ref|ZP_05576062.1| exonuclease [Enterococcus faecalis E1Sol] gi|257420127|ref|ZP_05597121.1| exonuclease [Enterococcus faecalis T11] gi|307271788|ref|ZP_07553059.1| exonuclease [Enterococcus faecalis TX0855] gi|307278717|ref|ZP_07559784.1| exonuclease [Enterococcus faecalis TX0860] gi|307290260|ref|ZP_07570176.1| exonuclease [Enterococcus faecalis TX0411] gi|312900097|ref|ZP_07759413.1| exonuclease [Enterococcus faecalis TX0470] gi|229309981|gb|EEN75968.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322] gi|256596289|gb|EEU15465.1| exonuclease [Enterococcus faecalis ATCC 4200] gi|256710977|gb|EEU26020.1| exonuclease [Enterococcus faecalis T8] gi|256954338|gb|EEU70970.1| exonuclease [Enterococcus faecalis HIP11704] gi|256989731|gb|EEU77033.1| exonuclease [Enterococcus faecalis E1Sol] gi|257161955|gb|EEU91915.1| exonuclease [Enterococcus faecalis T11] gi|306498681|gb|EFM68182.1| exonuclease [Enterococcus faecalis TX0411] gi|306504578|gb|EFM73781.1| exonuclease [Enterococcus faecalis TX0860] gi|306511666|gb|EFM80665.1| exonuclease [Enterococcus faecalis TX0855] gi|311292732|gb|EFQ71288.1| exonuclease [Enterococcus faecalis TX0470] gi|315030443|gb|EFT42375.1| exonuclease [Enterococcus faecalis TX4000] gi|315032587|gb|EFT44519.1| exonuclease [Enterococcus faecalis TX0017] gi|315143870|gb|EFT87886.1| exonuclease [Enterococcus faecalis TX2141] gi|315148698|gb|EFT92714.1| exonuclease [Enterococcus faecalis TX4244] gi|315151771|gb|EFT95787.1| exonuclease [Enterococcus faecalis TX0012] gi|315170466|gb|EFU14483.1| exonuclease [Enterococcus faecalis TX1342] gi|315174930|gb|EFU18947.1| exonuclease [Enterococcus faecalis TX1346] gi|327535953|gb|AEA94787.1| exonuclease [Enterococcus faecalis OG1RF] Length = 188 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 20/184 (10%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEA---LKLH 63 M FD ET I V++ + + F + P P ++H Sbjct: 12 MNFYAFDFETA--SYDKHSACSIAIVKVENSRIVDE-FYTLIKPET----PFFWRNTQIH 64 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI + + + P F ++ + + N +AHNA FD + L + Sbjct: 65 GIHESDVVNAPKFPEVWQQI-QHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQ-PNYLS 122 Query: 124 IDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQIN 182 + T+ +R+ P + LN++C+ IT+++ H AL DS +++ + + Sbjct: 123 LCTVKTSRKLFPEFPNHKLNTVCENLNITLNNH--HDALEDSRACAEILL-----QQEQR 175 Query: 183 FGFK 186 FG + Sbjct: 176 FGVE 179 >gi|237755791|ref|ZP_04584393.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium yellowstonense SS-5] gi|237692054|gb|EEP61060.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium yellowstonense SS-5] Length = 203 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 9/171 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLHGITD 67 + FD ETTGL+ K D I+ I AV++ D N F V + P+ R+ +A+K+HG+ Sbjct: 34 YVAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVRPD-REIIEDAIKIHGLRK 92 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + L+ F F + + + +FDV +N ++++ L P++ I+ Sbjct: 93 KDLESGIPIEEAVDRFAHFIGSR--PLVGYYLEFDVAMVNKYFKKLSGTTL-PNKQIEVS 149 Query: 128 SIARR----KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++ P DL + I KH AL D+ + + +++K+ Sbjct: 150 ALYYDFKIGLIPQGFVDLRFDSILKDLDIPTFGKHDALNDAIMTALIFLKL 200 >gi|193076779|gb|ABO11496.2| ribonuclease T [Acinetobacter baumannii ATCC 17978] Length = 220 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 79/191 (41%), Gaps = 20/191 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +++ D ++EI + ++ F + P G Sbjct: 17 RFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNAQGQFVPGPAFHAHINPFEGANLDR 76 Query: 58 EALKLHGITD------EFLKD-KPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107 +L GI +D + + IF + +Q+ + HNA FD+GF+ Sbjct: 77 RSLDFIGIDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQ 136 Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R ++P ++DT++++ + L C + GI + H AL D+ Sbjct: 137 AAIARSGTKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDT 194 Query: 165 HLLSDVYIKMM 175 ++++ ++ Sbjct: 195 QKTAELFCYIL 205 >gi|301066539|ref|YP_003788562.1| Rad3-like DNA helicase [Lactobacillus casei str. Zhang] gi|300438946|gb|ADK18712.1| Rad3-related DNA helicase [Lactobacillus casei str. Zhang] Length = 931 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 10/177 (5%) Query: 1 MIRKN-KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M + N + V D+ETTG K DR+I+ G L+ + K +T + P+ R Sbjct: 1 MFKMNAETIFAVVDLETTGTSVKDGDRMIQFGC-ALMQHGKIIQTISQLVNPD-RSVPVA 58 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 +L G+ L P F I + ++AHN FD F+NAE +R+ L Sbjct: 59 IQRLTGLDPNRLVAAPYFEEIAKTLHQLL--TDTVFVAHNVNFDYPFLNAEFERVGLPKL 116 Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + IDT+ +A+ P S L L I H + H A D+ + + ++ Sbjct: 117 QLAA-IDTVELAQILLPEISSFRLPDLTSYLQIE--HDNPHQADSDAISTAKLLRQL 170 >gi|23098512|ref|NP_691978.1| hypothetical protein OB1057 [Oceanobacillus iheyensis HTE831] gi|22776738|dbj|BAC13013.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 195 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 79/173 (45%), Gaps = 11/173 (6%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 + D ET + K + +G V +++ ++ F + P S +HGIT+ Sbjct: 3 KFAAIDFETA--NEKRNSACSVGVV-IMNDTEIIDEFYTLINPLASFRSGNVF-IHGITE 58 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E +++ P+F+ ++ + ++ IAHNA FD+ + L + + P + T+ Sbjct: 59 EQVQEAPTFAELWPTLSAYL--EDTILIAHNASFDMSVLRQSLNKYDI-PCPNYTSLCTV 115 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 I+R P + L+++ +GI ++H H A+ D+ + +++ + Sbjct: 116 KISRLIWPQLENHKLHTVANHHGIALNH---HHAMDDARASAKIFLASLAEQK 165 >gi|325568813|ref|ZP_08145106.1| exonuclease [Enterococcus casseliflavus ATCC 12755] gi|325157851|gb|EGC70007.1| exonuclease [Enterococcus casseliflavus ATCC 12755] Length = 177 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 9/168 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + + + V + D + + P + +++HGI Sbjct: 1 MNFIAMDFETA--NYQKHSACSLALVMVQDSKIVGE-YYTLIQPETEFF-WKNIQIHGIR 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E +++ P F ++ + ++ + N+ +AHNA FD G + L + T Sbjct: 57 PEDVQEAPKFPDVWKQIQQYY-QLNSLIVAHNAGFDTGVLAGCLDYYGLSQ-PNYLSLCT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +R+ +P + + LN++C++ I + + H AL DS + + ++ Sbjct: 115 VRTSRKLYPEFTNHKLNTVCEQLQIPLLNH--HDALEDSRACAQILLR 160 >gi|239631939|ref|ZP_04674970.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526404|gb|EEQ65405.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 309 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 16/177 (9%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 IR+ IV DIETTGL S +D II++ A+++ + + TF ++ P+ + Sbjct: 38 IRRKLYDYIVLDIETTGLSSVSDDIIQLSALKVKEDKVID-TFDSYVKPST-SIPENVVY 95 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120 + GIT+ +++ P I +F F + + HN +FD+ FI N + Sbjct: 96 ITGITNSTVENAPEIFEIMPKFVSF--TEGMPLVGHNIIRFDIPFIVN-----NGFYYED 148 Query: 121 SRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +DT +A+ K P L +L + +GI+ S H AL D VY + Sbjct: 149 IEALDTWRLAKNKDFPEPLKNLKLPTLKEYFGIS---GSSHNALDDCKTTITVYRHL 202 >gi|260881564|ref|ZP_05404714.2| helicase, UvrD/REP/exonuclease family protein [Mitsuokella multacida DSM 20544] gi|260848768|gb|EEX68775.1| helicase, UvrD/REP/exonuclease family protein [Mitsuokella multacida DSM 20544] Length = 874 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 8/178 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+E TG+D D II+I + L K F+ L R++ ++ ++H I+D Sbjct: 513 IVVFDVEATGVDPTRDEIIQIAGLRLGRDGKAKAEFKRLLR--ARRSVGDSYRVHKISDA 570 Query: 69 FLK-DKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L+ + ++ EF F + A + HN +D+ + +EL R+ PL R DTL Sbjct: 571 ILQQEGEEPEAVLREFCAF--AEGAVIVGHNVTYDLSILGSELARLGLPPLSYQRYYDTL 628 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 I RR +P+ + L L + +SHRS H A+ D +++ + + + G Sbjct: 629 DIFRRFYPNLPNHKLEYLGEF--CKVSHRSTHDAMDDVCATAEILTYAIEKNIRPHVG 684 >gi|327404630|ref|YP_004345468.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823] gi|327320138|gb|AEA44630.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM 16823] Length = 284 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 8/191 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 ++ D+ETTGLD DRIIEI ++ + + + + P S E+ ++ GITDE Sbjct: 9 FVMLDLETTGLDVAKDRIIEIALIKTTPTGEQSEYCKR-VNPTI-PISKESAEITGITDE 66 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTL 127 + +P+F + E F +A+ +N+ FD+ + E RI+ R + Sbjct: 67 MVATEPTFEQLADEIAAFIG--DADLGGYNSNKFDIPVLAEEFLRISHSFKINDRKF--I 122 Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187 + H + L + + Y + H AL D+ + DV+ + + Sbjct: 123 DVQNIFHKMEQRTLAAAYQFYCKE-PMENAHNALYDTKVTLDVFKAQLERYPDLAKSIPE 181 Query: 188 NEDRFFKEEKK 198 D + ++ Sbjct: 182 LADFSRQGNQE 192 >gi|317485586|ref|ZP_07944462.1| exonuclease [Bilophila wadsworthia 3_1_6] gi|316923123|gb|EFV44333.1| exonuclease [Bilophila wadsworthia 3_1_6] Length = 169 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 10/166 (6%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + + + V + T + P R+ +HGIT + Sbjct: 6 YVALDFETADYQPDSACAVGLAKVR---GGEVVDTLYSLIRPPRRRVL--FTWVHGITWK 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P+F + + F + +AHNA FD + A Q N L + TL Sbjct: 61 DVQGSPTFLEFWPQMASFL-QGVTHLVAHNAPFDRRVLEACCQ-SNGIALPDLPFVCTLR 118 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +RRK + L+++C+ GI + H H A D+ + + I + Sbjct: 119 ESRRKLKLPSHKLDAVCRCCGIPLDH---HHAGSDAIAAARILIYL 161 >gi|229592763|ref|YP_002874882.1| putative exonuclease [Pseudomonas fluorescens SBW25] gi|229364629|emb|CAY52540.1| putative exonuclease [Pseudomonas fluorescens SBW25] Length = 203 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 9/169 (5%) Query: 8 RKIVFDIETTGLDSKND-RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R V D ETTG+ + R EI V +L+ + +Q + G + +L GI+ Sbjct: 3 RIAVIDFETTGITPNSHCRATEIAVV-ILERGQIVDRYQSLMN-AGVRVPGFIEQLTGIS 60 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + L+ P + +E +F +AHNA FD F + EL I + L + + Sbjct: 61 NAMLRSAPPAERVMNEVNEFVGT--TPLMAHNAAFDQKFWDYELGLIRRTRL--QKFACS 116 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 L +ARR P+ + L +L + + + H A+ D+ + +++ + Sbjct: 117 LLLARRLMPTAPNHKLGTLNAFAQLPHTGK-AHRAMADAEMAANLTAHL 164 >gi|256828365|ref|YP_003157093.1| DNA polymerase III subunit epsilon [Desulfomicrobium baculatum DSM 4028] gi|256577541|gb|ACU88677.1| DNA polymerase III, epsilon subunit [Desulfomicrobium baculatum DSM 4028] Length = 244 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 19/179 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKT-NRTFQVFLCPNGRKNSPEALKLHGITD 67 V D E TGL ++ + I+ IGAV + + +F V + P+ + +H IT Sbjct: 46 YTVLDTELTGLSARREEIVSIGAVRVRGLAIVPGESFSVLVRPSI-PLPKTSTLIHRITP 104 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 E + P + + E +F + + H+ D+ F+N ++ + PL + +DT+ Sbjct: 105 EAIAQAPPLAEVLPELIEFC--KGTLIVGHHVGLDMSFLNRACRKNHGQPLA-NPCLDTM 161 Query: 128 SIAR----RKHPSS--------RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A ++ PS L L + + + H AL D+ + ++I + Sbjct: 162 RMAMLWREKRTPSHYEQFNLSISYVLTDLAHEF--DLPRFTAHEALGDALQTAYLFIYL 218 >gi|86130881|ref|ZP_01049480.1| exonuclease [Dokdonia donghaensis MED134] gi|85818292|gb|EAQ39452.1| exonuclease [Dokdonia donghaensis MED134] Length = 229 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 15/176 (8%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGIT 66 R +VFD ETTGLD K DRI+ +G V ++ T ++FL + P++ ++HGI Sbjct: 45 RFVVFDTETTGLDYKKDRILSLGGVAVVGNQVIVADTLELFLKQDFYN--PDSAQIHGIL 102 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + K + ++ DF + H+ FDV +N L+R L +R +DT Sbjct: 103 KQGNYLKVNEKEAIAQCLDFIGTD--ILVGHHVGFDVAVVNQSLKRAGLGRL-KNRQLDT 159 Query: 127 -LSIARRKHP------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + R HP R L+ L + I + R H A DS + + +IK++ Sbjct: 160 EILYKRLVHPVNRPLQDKRYTLDELAEALKIPLHDR--HTAAGDSLITALAFIKIV 213 >gi|69245046|ref|ZP_00603204.1| Exonuclease [Enterococcus faecium DO] gi|314947594|ref|ZP_07851004.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0082] gi|68196047|gb|EAN10479.1| Exonuclease [Enterococcus faecium DO] gi|313645987|gb|EFS10567.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0082] Length = 201 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 9/168 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +M + D ET + + V + + + F + P +++HGI Sbjct: 24 EMNFVAMDFETANHQPYSA--CSLALVMVKNSQIVDE-FYTLIQPET-PFFWRNVQIHGI 79 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 E +++ P F ++ +F ++N +AHNA FD + L + + + Sbjct: 80 HQEDVRNAPKFPEVWQTIQPYF-QKNRLVVAHNAAFDTKVLAGCLDYYHLEQ-PNYLSLC 137 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 T+ +RR P + LN++C+ I + H H AL DS +++ + Sbjct: 138 TVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 183 >gi|169633084|ref|YP_001706820.1| ribonuclease T [Acinetobacter baumannii SDF] gi|169796663|ref|YP_001714456.1| ribonuclease T [Acinetobacter baumannii AYE] gi|184157422|ref|YP_001845761.1| ribonuclease T [Acinetobacter baumannii ACICU] gi|213156111|ref|YP_002318531.1| ribonuclease T [Acinetobacter baumannii AB0057] gi|215484153|ref|YP_002326378.1| ribonuclease T [Acinetobacter baumannii AB307-0294] gi|239503321|ref|ZP_04662631.1| ribonuclease T [Acinetobacter baumannii AB900] gi|260550758|ref|ZP_05824966.1| ribonuclease T [Acinetobacter sp. RUH2624] gi|260557371|ref|ZP_05829586.1| ribonuclease T [Acinetobacter baumannii ATCC 19606] gi|301347763|ref|ZP_07228504.1| ribonuclease T [Acinetobacter baumannii AB056] gi|301512246|ref|ZP_07237483.1| ribonuclease T [Acinetobacter baumannii AB058] gi|301596674|ref|ZP_07241682.1| ribonuclease T [Acinetobacter baumannii AB059] gi|332854542|ref|ZP_08435420.1| ribonuclease T [Acinetobacter baumannii 6013150] gi|332870163|ref|ZP_08439075.1| ribonuclease T [Acinetobacter baumannii 6013113] gi|332875101|ref|ZP_08442937.1| ribonuclease T [Acinetobacter baumannii 6014059] gi|169149590|emb|CAM87480.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter baumannii AYE] gi|169151876|emb|CAP00718.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter baumannii] gi|183209016|gb|ACC56414.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU] gi|213055271|gb|ACJ40173.1| ribonuclease T [Acinetobacter baumannii AB0057] gi|213986450|gb|ACJ56749.1| ribonuclease T [Acinetobacter baumannii AB307-0294] gi|260406264|gb|EEW99748.1| ribonuclease T [Acinetobacter sp. RUH2624] gi|260408997|gb|EEX02300.1| ribonuclease T [Acinetobacter baumannii ATCC 19606] gi|322507302|gb|ADX02756.1| Ribonuclease T [Acinetobacter baumannii 1656-2] gi|323517321|gb|ADX91702.1| ribonuclease T [Acinetobacter baumannii TCDC-AB0715] gi|332727951|gb|EGJ59346.1| ribonuclease T [Acinetobacter baumannii 6013150] gi|332732430|gb|EGJ63686.1| ribonuclease T [Acinetobacter baumannii 6013113] gi|332736718|gb|EGJ67709.1| ribonuclease T [Acinetobacter baumannii 6014059] Length = 220 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 79/191 (41%), Gaps = 20/191 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +++ D ++EI + ++ F + P G Sbjct: 17 RFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDR 76 Query: 58 EALKLHGITD------EFLKD-KPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107 +L GI +D + + IF + +Q+ + HNA FD+GF+ Sbjct: 77 RSLDFIGIDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFLQ 136 Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R ++P ++DT++++ + L C + GI + H AL D+ Sbjct: 137 AAIARSGTKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDT 194 Query: 165 HLLSDVYIKMM 175 ++++ ++ Sbjct: 195 QKTAELFCYIL 205 >gi|226952584|ref|ZP_03823048.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse activity) [Acinetobacter sp. ATCC 27244] gi|294649880|ref|ZP_06727280.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194] gi|226836664|gb|EEH69047.1| ribonuclease T (degrades tRNA, with exonuclease and ssDNAse activity) [Acinetobacter sp. ATCC 27244] gi|292824254|gb|EFF83057.1| ribonuclease T [Acinetobacter haemolyticus ATCC 19194] Length = 220 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 76/191 (39%), Gaps = 20/191 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G + + D ++EI + ++ +FQ + P G Sbjct: 17 RFRGFLPVVVDVETAGFNCQTDALLEIACIPIVYDEHGQFVPGPSFQAHINPFEGANLDR 76 Query: 58 EALKLHGIT--DEF-LKDKPSFSSIFS-------EFWDFFNEQNAEWIAHNAKFDVGFIN 107 +L GI + + S E + +A + HNA FD+GF+ Sbjct: 77 RSLDFIGIDPFNPMRVAMAEDERSALRRIFKSLNEIRKAQHCTHAVLVGHNAHFDLGFLQ 136 Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R ++P + DT++++ + L C + GI + H AL D+ Sbjct: 137 AAIARSGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLARACIQAGIEFDGKEAHSALYDT 194 Query: 165 HLLSDVYIKMM 175 ++++ ++ Sbjct: 195 QKTAELFCYIL 205 >gi|288928331|ref|ZP_06422178.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108] gi|288331165|gb|EFC69749.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108] Length = 284 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 12/186 (6%) Query: 2 IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N R +VFD+ETTGLD NDRII+I +++ K R + + P R E Sbjct: 1 MKLNLTRPLVVFDLETTGLDLVNDRIIQISYIKIYPDGKEERE-NLLVYPQ-RPIPDEVS 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118 +L GIT + ++D P+F + + F + ++ N FD+ + E R D Sbjct: 59 ELTGITTDLVEDAPTFEELAPRLNEVF--KGCDFAGFNSNHFDIPMLAEEFLRAEIDFDF 116 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYIKMMV 176 +R+ID +I H + +L + K Y G + H A D+ V + + Sbjct: 117 SSARLIDAQTI---FHKMEKRNLAAAYKFYCGRKMEDDFEAHRADQDAEATYRVLLGELE 173 Query: 177 GGSQIN 182 S+ N Sbjct: 174 RYSEAN 179 >gi|302668948|ref|YP_003832773.1| exonuclease family protein [Butyrivibrio proteoclasticus B316] gi|302397288|gb|ADL36191.1| exonuclease family protein [Butyrivibrio proteoclasticus B316] Length = 302 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 61/219 (27%), Positives = 94/219 (42%), Gaps = 19/219 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEA 59 +R NK+ I++D ETTG K I++I A++L + T ++ P A Sbjct: 26 LRNNKVPIIIYDTETTGT-GKKAYIVQISALKLSPGNPYYIVDTLDQYIRPPI-PMPAAA 83 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIA--HNAKFDVGFINAELQRINKDP 117 ++ ITDEFL+DKPS S +FF + N IA ++ FD +N QR Sbjct: 84 SAVNHITDEFLEDKPSEEIALSWIQNFFGDPNDSVIAGYNHISFDNKMMNNMYQRAAGLT 143 Query: 118 LDPSRIIDTLSIARRK-----HPSSRNDLNSLCKRYGITIS-HRSKHGALLDSHLLSDVY 171 DP +D L +AR R L S+ + YGI + H A+ D + V Sbjct: 144 FDPKWNVDALVMARCLVDRNEITDGRFTLASIAETYGIKTDEDQQLHNAMTDIQVTMKVM 203 Query: 172 IKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDK 210 + IN + ++ + + T P I +L K Sbjct: 204 WAL------INDYVDSGLEQVY-LSQSTKPIIQILGAPK 235 >gi|257094710|ref|YP_003168351.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047234|gb|ACV36422.1| Exonuclease RNase T and DNA polymerase III [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 469 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 R +ETTG + DRI +IG +E T+ + P R +L+G D Sbjct: 5 RLAFIGLETTGANPLRDRITKIGVLEAEGDR--VSTWSTLVNPQ-RPIPEFIQQLNGSRD 61 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + D P+F+ + +E D + + +IAH+A+F+ F+ E QR+ K + ++ T+ Sbjct: 62 ATVADAPTFAQVAAELADRLHGR--LFIAHHARFNYAFVKREFQRLGKSF--RADVLCTV 117 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 ++R+ P ++ L SL R+ ++ GAL +HLL + + Sbjct: 118 RLSRKLFPEHQKHHLESLMVRH--DLTTGVHSGALAAAHLLGQFWCVL 163 >gi|260912251|ref|ZP_05918803.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp. oral taxon 472 str. F0295] gi|260633685|gb|EEX51823.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp. oral taxon 472 str. F0295] Length = 284 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 18/240 (7%) Query: 2 IRKNKMRK-IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 ++ N R IVFD+ETTGLD NDRII+I +++ K R +F+ P G+ E Sbjct: 1 MKLNLTRPLIVFDLETTGLDLVNDRIIQISYIKVYPDGKEERE-NLFVYP-GKPIPDEVS 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118 +L GIT + ++D P+F + + F + ++ N FD+ + E R D Sbjct: 59 ELTGITTDLVEDAPTFEELAPRLNEVF--KGCDFAGFNSNHFDIPMLAEEFLRAEIDFDF 116 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR-SKHGALLDSHLLSDVYIKMMV 176 R+ID +I H + +L + K Y G + + H A D+ V + + Sbjct: 117 SSVRLIDAQTI---FHKMEKRNLAAAYKFYCGRKMEEDFAAHRADQDAEATYRVLLGELE 173 Query: 177 GGSQINFG----FKTNEDRFFKEEKKTVPNISLLKRD--KPLFTRITKEELDEHDKTIQT 230 S+ N N+ + E K N+ R +P+ KE LD+ + I+ Sbjct: 174 KYSEANQEEAERVLPNDMDYLAEFSKNNDNVDFAGRIVWRPVLDANGKETLDDKGQVIKK 233 >gi|229551811|ref|ZP_04440536.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1] gi|258539212|ref|YP_003173711.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705] gi|229314755|gb|EEN80728.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1] gi|257150888|emb|CAR89860.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705] Length = 180 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 9/168 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K + V + + +F + P + P+ +++HGIT Sbjct: 1 MDFIAMDFETA--NRKRASACSLALVVVQQNRVVD-SFYTLINPQ-MQFDPQNIRIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++D+P+F ++ F+ AHNA FDV + L R ++IDT Sbjct: 57 PDMVQDQPTFDRVWPHIQMFYTP-GRIVTAHNAPFDVSVLRLTLDRYGI-AAPRYQVIDT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +R+ P + L+++ I + H H AL DS+ + + I Sbjct: 115 VKTSRQFLPKLPNHRLDTVSAALKIPLEHH--HNALADSYACARILIA 160 >gi|160895546|ref|YP_001561128.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1] gi|160361130|gb|ABX32743.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1] Length = 211 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 9/156 (5%) Query: 6 KMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 V D ETTG+ + R E+ V L++ + FQ + G P +L G Sbjct: 2 PQPIAVIDFETTGMAPAQGARATEVAIV-LIEGGQVVDRFQSLMR-TGAWIPPFITRLTG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 IT+ + P + + F A +AHNA FD F +EL P Sbjct: 60 ITNAMVAAAPPAEEVMRDAARFVGS--APMVAHNAAFDSKFWQSELALAG--EAAPQPFA 115 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHG 159 T+ ++RR +P + L+ L G+ ++ R H Sbjct: 116 CTVLLSRRIYPEAPSHSLSRLTAHLGLPVAER-AHR 150 >gi|116494972|ref|YP_806706.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334] gi|116105122|gb|ABJ70264.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334] Length = 928 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K DR+I+ G L+ + K +T + P+ R +L G+ Sbjct: 7 FAVVDLETTGTSVKDGDRMIQFGC-ALMQHGKIIQTISQLVNPD-RSVPVAIQRLTGLDP 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P F I + ++AHN FD F+NAE +R+ L + IDT+ Sbjct: 65 NRLVAAPYFEEIAKTLHQLL--TDTVFVAHNVNFDYPFLNAEFERVGLPKLQLAA-IDTV 121 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A+ P S L L I H + H A D+ + + ++ Sbjct: 122 ELAQILLPEISSFRLPDLTSYLQIE--HDNPHQADSDAISTAKLLRQL 167 >gi|19745746|ref|NP_606882.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Streptococcus pyogenes MGAS8232] gi|19747886|gb|AAL97381.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes MGAS8232] Length = 833 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 10/176 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M +K + V D+E TG I + + K +++ + P+ + Sbjct: 15 MTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN--KIMDSYETDVNPH-ESLDEHIV 71 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 L GITD+ L P F + + ++ ++AHN KFD + L + P Sbjct: 72 HLTGITDKQLAKAPDFGQVAHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELTIP 129 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DT+ +A+ P + +L+ L ++ I ++ H A+ D+ + ++++++ Sbjct: 130 --RVDTVELAQLFFPRFEKYNLSHLSRQLNIDLA--EAHTAIADARATAILFLRLL 181 >gi|304386198|ref|ZP_07368531.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] gi|304327555|gb|EFL94782.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus acidilactici DSM 20284] Length = 181 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 12/173 (6%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 MI N + D ET I + + T+ + + P K + Sbjct: 1 MIFLN---FVAIDFETA--APARASACSIALTVVQNDQITDELYS-LINPET-KFHWRNV 53 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDP 120 ++HGI + ++D P+F ++ FF +AHNA FD + L+R + L P Sbjct: 54 QVHGIHEADVQDAPTFPELWPILQPFFTPDQLV-VAHNANFDNSVLKKTLERYELNRL-P 111 Query: 121 SRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + +DTL +R P+ + LN+LC GI + H H AL DS +++ + Sbjct: 112 YQTLDTLRTSRSFFPNYPNHKLNTLCDNLGIELEHH--HNALDDSLACANILL 162 >gi|191638483|ref|YP_001987649.1| ATP-dependent helicase DinG [Lactobacillus casei BL23] gi|190712785|emb|CAQ66791.1| ATP-dependent helicase DinG [Lactobacillus casei BL23] gi|327382518|gb|AEA53994.1| ATP-dependent helicase [Lactobacillus casei LC2W] gi|327385715|gb|AEA57189.1| ATP-dependent helicase [Lactobacillus casei BD-II] Length = 928 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 9/168 (5%) Query: 9 KIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D+ETTG K DR+I+ G L+ + K +T + P+ R +L G+ Sbjct: 7 FAVVDLETTGTSVKDGDRMIQFGC-ALMQHGKIIQTISQLVNPD-RSVPVAIQRLTGLDP 64 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 L P F I + ++AHN FD F+NAE +R+ L + IDT+ Sbjct: 65 NRLVAAPYFEEIAKTLHQLL--TDTVFVAHNVNFDYPFLNAEFERVGLPKLQLAA-IDTV 121 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A+ P S L L I H + H A D+ + + ++ Sbjct: 122 ELAQILLPEISSFRLPDLTSYLQIE--HDNPHQADSDAISTAKLLRQL 167 >gi|120436594|ref|YP_862280.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803] gi|117578744|emb|CAL67213.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803] Length = 258 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 10/192 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K FD+ETTG + DRI+EI +++ N+ +L R+ E + Sbjct: 1 MDLKLTKPICFFDLETTGTNISKDRIVEIAVLKVFPNG--NKESHTWLVNPEREIPAEVI 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119 +HGIT+E + ++P+F + + D + + +N +FD+ + EL R + D Sbjct: 59 AIHGITNEKVANEPTFKELAQKIHDLI--KGCDLGGYNSNRFDIPLLVEELLRADIDF-- 114 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMVGG 178 + + + + H + L++ + Y G + HGA D+ +V + Sbjct: 115 EMKNVVAVDVQTIFHKKEQRTLSAAYQFYCGKELEG--AHGAEADTEATYEVLKSQLDKY 172 Query: 179 SQINFGFKTNED 190 + K D Sbjct: 173 QDLENDMKWLAD 184 >gi|314937698|ref|ZP_07845022.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a04] gi|314943353|ref|ZP_07850126.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133C] gi|314953543|ref|ZP_07856454.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133A] gi|314994073|ref|ZP_07859394.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133B] gi|314996850|ref|ZP_07861856.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a01] gi|313589017|gb|EFR67862.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a01] gi|313591508|gb|EFR70353.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133B] gi|313594422|gb|EFR73267.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133A] gi|313597934|gb|EFR76779.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133C] gi|313642944|gb|EFS07524.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Enterococcus faecium TX0133a04] Length = 194 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 9/168 (5%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 +M + D ET + + V + + + F + P +++HGI Sbjct: 17 EMNFVAMDFETANHQPYSA--CSLALVMVKNSQIVDE-FYTLIQPET-PFFWRNVQIHGI 72 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 E +++ P F ++ +F ++N +AHNA FD + L + + + Sbjct: 73 HQEDVRNAPKFPEVWQTIQPYF-QKNRLVVAHNAAFDTKVLAGCLDYYHLEQ-PNYLSLC 130 Query: 126 TLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 T+ +RR P + LN++C+ I + H H AL DS +++ + Sbjct: 131 TVKSSRRLFPEFPNHRLNTVCENLNIQLDHH--HDALEDSRACAEILL 176 >gi|292488519|ref|YP_003531403.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430] gi|292899700|ref|YP_003539069.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946] gi|291199548|emb|CBJ46665.1| exodeoxyribonuclease X [Erwinia amylovora ATCC 49946] gi|291553950|emb|CBA20995.1| exodeoxyribonuclease X [Erwinia amylovora CFBP1430] Length = 221 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V++++ N + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGLQGG---VVEVASVDVINGQIVN-PMSDLISPD-RPISRQAIAVHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP+ + + ++AHNA FD + P I T+++A Sbjct: 59 RGKPTIEQAIGRYH-----GSPFYVAHNASFDRRML----------PEMHGEWICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 RR P + SL + + +S + H AL D ++ + + I++M Sbjct: 104 RRLWPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVTAALLIRIM 151 >gi|283955874|ref|ZP_06373364.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283792534|gb|EFC31313.1| exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 253 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 7/147 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE+TG SK I+EIGAV++ + + R FQ F+ ++ +L GIT E Sbjct: 72 FCIVDIESTGGVSKG-EILEIGAVKIQNSKEIGR-FQSFVK--VKEIPENITELTGITYE 127 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ S + + S+F F +++ ++AHN +FD FI+ L L +R I T+ Sbjct: 128 MVENALSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 184 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155 A+ S + L L + G+ +H Sbjct: 185 FAQCCIESPKYKLEVLKEFLGVENTHH 211 >gi|312172662|emb|CBX80918.1| exodeoxyribonuclease X [Erwinia amylovora ATCC BAA-2158] Length = 221 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL ++E+ +V++++ N + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGLQGG---VVEVASVDVINGQIVN-PMSDLISPD-RPISRQAIAVHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP+ + + ++AHNA FD + P I T+++A Sbjct: 59 RGKPTIEQAIGRYH-----GSPFYVAHNASFDRRML----------PEMHGEWICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 RR P + SL + + +S + H AL D ++ + + I++M Sbjct: 104 RRLWPGLKYTNESLRQSLQLEVSPPAELHAHRALYDCYVTAALLIRIM 151 >gi|312870293|ref|ZP_07730421.1| exonuclease [Lactobacillus oris PB013-T2-3] gi|311094177|gb|EFQ52493.1| exonuclease [Lactobacillus oris PB013-T2-3] Length = 178 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 9/167 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET +K + + D + F + P +++HGI Sbjct: 1 MNFIAMDFETA--SAKRYSACSLALTIVRDN-QIADEFYTLINPQT-PFFWRNVQIHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P+F ++ F+ + IAHN +FD G + + L+ +P + +DT Sbjct: 57 ERDVADAPTFPEVWEHIKGFYTPEKLV-IAHNNRFDNGVLKSTLEHYGIEP-PAYQTLDT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + +RR P S LN++C I + H H AL D+ +++ + Sbjct: 115 VVSSRRLLPGLSNYKLNTVCDALNIDLHHH--HNALDDAQACANILL 159 >gi|199597302|ref|ZP_03210733.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus rhamnosus HN001] gi|199591818|gb|EDY99893.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus rhamnosus HN001] Length = 180 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 9/168 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K + V + + +F + P + P+ +++HGIT Sbjct: 1 MDFIAMDFETA--NRKRASACSLALVVVQQNRVVD-SFYTLINPQ-MQFDPQNIRIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++D+PSF ++ F+ AHNA FDV + L R ++IDT Sbjct: 57 PDMVQDQPSFDRVWPHIQMFYTP-GRIVTAHNAPFDVSVLRLTLDRYGI-AAPRYQVIDT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +R+ P + L+++ I + H H AL DS+ + + I Sbjct: 115 VKTSRQFLPKLPNHRLDTVSAALKIPLEHH--HNALADSYACARILIA 160 >gi|326565468|gb|EGE15639.1| ribonuclease T [Moraxella catarrhalis 12P80B1] gi|326572590|gb|EGE22579.1| ribonuclease T [Moraxella catarrhalis CO72] Length = 232 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 20/191 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++ D ++EI V + + P +G P Sbjct: 15 RFRGFLPVVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEP 74 Query: 58 EALKLHGIT-DEFLKDKPSFSS--IFSEFWDFF-------NEQNAEWIAHNAKFDVGFIN 107 ALK GI D + S + + + HNA FD+GF+N Sbjct: 75 AALKFTGINPDSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNAHFDLGFLN 134 Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R N P ++DT+S A + L C G+ ++ H AL D+ Sbjct: 135 AAIARTNSKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGLEFDNQHAHSALYDA 192 Query: 165 HLLSDVYIKMM 175 ++++ ++ Sbjct: 193 QKTAELFCHIV 203 >gi|262372115|ref|ZP_06065394.1| ribonuclease T [Acinetobacter junii SH205] gi|262312140|gb|EEY93225.1| ribonuclease T [Acinetobacter junii SH205] Length = 221 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 78/191 (40%), Gaps = 20/191 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS----KTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +S+ D ++EI + ++ F + P G Sbjct: 18 RFRGFLPVVVDVETAGFNSQTDALLEIACIPIVYDQQGQFIPGPAFHAHINPFEGANLDR 77 Query: 58 EALKLHGITD------EFLKD-KPSFSSIFS---EFWDFFNEQNAEWIAHNAKFDVGFIN 107 +L GI +D + + IF E + +A + HNA FD+GF+ Sbjct: 78 RSLDFIGIDPFNPMRVAMAEDERGALRRIFKSLNEVRKAQHCTHAVLVGHNAHFDLGFLQ 137 Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R ++P + DT++++ + L C + GI + H AL D+ Sbjct: 138 AAIARSGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLARACIQAGIEFDGKEAHSALYDT 195 Query: 165 HLLSDVYIKMM 175 ++++ ++ Sbjct: 196 QKTAELFCYIL 206 >gi|317010079|gb|ADU80659.1| DNA polymerase III subunit epsilon [Helicobacter pylori India7] Length = 287 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 84/217 (38%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYISDLTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS + F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSVHEALQKLRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G I H A D+ ++ ++ I+ Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + ++T P SL +R K L I Sbjct: 247 FSQCANTLIKRPPRARYQETPPPFSLFERTKGLLNII 283 >gi|221633099|ref|YP_002522324.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM 5159] gi|221156634|gb|ACM05761.1| DNA polymerase III epsilon subunit [Thermomicrobium roseum DSM 5159] Length = 228 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 18/180 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67 V D E TGLD + D ++ +GAV ++ +F + P R+ +++ +HGI Sbjct: 33 YTVLDAEMTGLDPERDELLALGAVRMVGTRLLLGASFYQLIRPQ-RQGWGQSVTVHGIRP 91 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127 + P + EF F + + H + D F+ R + +DT Sbjct: 92 VDVVGAPPLEQVLPEFVRFCAS--SILVGHGVEIDRKFLQRAAARCGLSW-PRTYWVDTG 148 Query: 128 SIARRK-----------HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +AR R L L Y I ++H AL D+ + + V+ + + Sbjct: 149 RVARWLTSHHGALPEAAADRGRFSLEDLLAAYEIEPP--ARHHALADAFVTALVWQRQLT 206 >gi|261340232|ref|ZP_05968090.1| exodeoxyribonuclease 10 [Enterobacter cancerogenus ATCC 35316] gi|288317749|gb|EFC56687.1| exodeoxyribonuclease 10 [Enterobacter cancerogenus ATCC 35316] Length = 220 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET L I+E+ +V+++D N + P+ R SP+A+ +H IT+ + Sbjct: 4 VIDTETCDLQGG---IVEVASVDVVDGQIVNPMSH-LVRPD-RPISPQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP + S + + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEEVISHYH-----GSPWYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K +++ H AL D ++ + + I +M Sbjct: 104 RRLWPGIKYSNMALYKSRKLSVQTPEGLHHHRALYDCYITAALLIDIM 151 >gi|317178251|dbj|BAJ56040.1| DNA polymerase III subunit epsilon [Helicobacter pylori F16] Length = 287 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G +I H A D+ ++ ++ I+ Sbjct: 189 KRAILSMRYSLSFLKELLGFSIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + ++T+ SL +R K L I Sbjct: 247 FSKCANTLIKRPPRARHQETLAPFSLFERTKGLLNII 283 >gi|260583570|ref|ZP_05851318.1| DnaQ family exonuclease/DinG family helicase [Granulicatella elegans ATCC 700633] gi|260158196|gb|EEW93264.1| DnaQ family exonuclease/DinG family helicase [Granulicatella elegans ATCC 700633] Length = 873 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 75/178 (42%), Gaps = 9/178 (5%) Query: 6 KMRKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 K V D+ETTG + RI + G +++ + +++ P E +L G Sbjct: 2 KTSYAVVDLETTGPKFEEGGRIFQFGC-SIIEQGEIVTQVDLYINPETT-IPYEIQQLTG 59 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 + + +K P F + S + + ++AHN FD ++ + + + + Sbjct: 60 VDKKEVKQAPYFDEVASTIFQLL--EGKTFVAHNISFDYSYLVESFRELAGIEWS-APCV 116 Query: 125 DTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 DT+ +A+ +P+ L L + I H+ H A D++ + +++ + Q+ Sbjct: 117 DTVQLAQICYPTIESYRLQDLTQLLEIP--HQQIHSAGSDAYATAQLFLNCLEELEQL 172 >gi|125549801|gb|EAY95623.1| hypothetical protein OsI_17478 [Oryza sativa Indica Group] Length = 260 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 78/186 (41%), Gaps = 16/186 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG K+ RI+E +L N TF+ + P R L I + Sbjct: 62 ILVFDLETTGYFHKDHRIVEFALCDLSGGK--NSTFETLVNPE-RTVPDYVQHLIKIGTD 118 Query: 69 FL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPLDP 120 + P FS + F + A W+AHN +FD F+ E R + Sbjct: 119 LVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPLPAD 178 Query: 121 SRIIDTLSIARRK----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 DTL +A++ R L +L + YGI +SH H A+ D +LS V+ KM Sbjct: 179 WLFFDTLLLAKKMVKAEGKKRRTSLEALREHYGI-VSHDDAHRAMRDVMILSQVFQKMTF 237 Query: 177 GGSQIN 182 N Sbjct: 238 DLKLTN 243 >gi|258507958|ref|YP_003170709.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG] gi|257147885|emb|CAR86858.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG] gi|259649285|dbj|BAI41447.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG] Length = 180 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 9/168 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K + V + + +F + P + P+ +++HGIT Sbjct: 1 MDFIAMDFETA--NRKRASACSLALVVVQQNRVVD-SFYTLINPQ-MQFDPQNIRIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + ++D+P+F ++ F+ AHNA FDV + L R ++IDT Sbjct: 57 PDMVQDQPTFDRVWPHIQMFYTP-GRIVTAHNAPFDVSVLRLTLDRYGI-AAPRYQVIDT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +R+ P + L+++ I + H H AL DS+ + + I Sbjct: 115 VKTSRQFLPKLPNHRLDTVSAALKIPLEHH--HNALADSYACARILIA 160 >gi|192362510|ref|YP_001983050.1| ribonuclease T [Cellvibrio japonicus Ueda107] gi|190688675|gb|ACE86353.1| ribonuclease T [Cellvibrio japonicus Ueda107] Length = 223 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 18/210 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKT----NRTFQVFLCP-NGRKNSP 57 R ++ D+ET G +++ D ++EI AV + + TF + P G Sbjct: 17 RFRGFLPVIVDVETGGFNAQTDALLEIAAVTIRMDEDGFLHRHETFAFQVEPFEGANIEQ 76 Query: 58 EALKLHGITDE--FLKDKPSF---SSIFSEFWDFFNEQNA---EWIAHNAKFDVGFINAE 109 AL GI + +P + +FS E + HNA FD+GF+NA Sbjct: 77 AALDFTGIDPDSPDRIAEPELMVMTDLFSAVRRAVKESGCTRAVMVGHNAHFDLGFVNAA 136 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 ++R N ++P P + DT ++A + L CK GI S+ + H A D+ Sbjct: 137 VERCNIKRNPFHPFSVFDTATLAGLAF--GQTVLAKACKTAGIEFSNSAAHCAAYDAEKT 194 Query: 168 SDVYIKMMVGGSQINFGFKTNEDRFFKEEK 197 +D++ ++V Q G+ ++D ++ + Sbjct: 195 ADLFC-LIVNRWQTLGGWCASDDELDEDAE 223 >gi|114321417|ref|YP_743100.1| ribonuclease T [Alkalilimnicola ehrlichii MLHE-1] gi|114227811|gb|ABI57610.1| RNAse T [Alkalilimnicola ehrlichii MLHE-1] Length = 216 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 17/188 (9%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R +V D+ET GL++ D +++I AV L T + P G P Sbjct: 18 RFRGFLPVVVDVETGGLNAATDALLQIAAVVLRMDENGRLYPAATHTCHVKPFEGANIDP 77 Query: 58 EALKLHGITDEF-LKDKPSFSSIFSEFWDFFNEQ-------NAEWIAHNAKFDVGFINAE 109 +AL+L+GI + L+ + + ++ A I HN+ FD+GF+NA Sbjct: 78 KALELNGIDPDHPLRMALPEDEALKKVFRPIRQEVRQTGCNRAVLIGHNSFFDLGFLNAA 137 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 +QR ++P P DT ++A + + L G ++ H A+ D+ Sbjct: 138 VQRCGIKRNPFHPFTSFDTATLAGLAY--GQTVLAKALVASGEEWDGKAAHSAIYDAEKT 195 Query: 168 SDVYIKMM 175 +D++ ++ Sbjct: 196 ADLFCGIV 203 >gi|325286963|ref|YP_004262753.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489] gi|324322417|gb|ADY29882.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489] Length = 221 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 91/184 (49%), Gaps = 15/184 (8%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEALKLH 63 + +V D ETTG + DR++ IGA++L + +F+VF+ + E ++H Sbjct: 32 QDITFVVLDTETTGFSYQEDRMLCIGALKLKNNDINIGDSFEVFIHQDHYN--QETAEIH 89 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRI 123 GI E + F + +N+ +AH+A FDV FIN L+R + L ++I Sbjct: 90 GILKEGKTTRLEELETLKLFLAYL--KNSVIVAHHAGFDVTFINMALERHSLPKL-KNKI 146 Query: 124 IDTLSIARR-------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +DT ++ ++ L+ L +++ I++ R H AL D+++ + ++K++V Sbjct: 147 LDTSTLYKKTLIRSNLLVKKEHYSLDELAEKFSISVKDR--HTALGDAYITAIAFLKILV 204 Query: 177 GGSQ 180 + Sbjct: 205 KLKE 208 >gi|300934175|ref|ZP_07149431.1| putative exonuclease [Corynebacterium resistens DSM 45100] Length = 214 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 70/192 (36%), Gaps = 31/192 (16%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 I+ D+ETTGL+ KN RIIE+ + + D N + L P S L GIT+ Sbjct: 18 IIIDVETTGLEPKNHRIIEVATLTVRDAQPINSQ-RWLLNPEDH-ISEFITDLTGITNAH 75 Query: 70 LKDKPSFSSIFSEFWDFFNEQN---------AEWIAHNAKFDVGFINAELQ--------- 111 + P+F S+ E N + HN FD F+ EL Sbjct: 76 VAKCPTFRSVAEEIMSVLNPAGEHGSDTGQAPILVGHNVAFDYSFLQHELLRNELHSPIN 135 Query: 112 ------RINKDPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALL 162 R ++ T IAR P R L ++ + HR +H A + Sbjct: 136 DAHGSGREQLRAPYTPPLLCTAEIARTLIPRSAVGRYRLANVAAYF--DAPHRPQHRADV 193 Query: 163 DSHLLSDVYIKM 174 D DV + Sbjct: 194 DVWATFDVLCGL 205 >gi|262368659|ref|ZP_06061988.1| ribonuclease T [Acinetobacter johnsonii SH046] gi|262316337|gb|EEY97375.1| ribonuclease T [Acinetobacter johnsonii SH046] Length = 219 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 20/196 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +++ D ++EI A+ ++ + + P G Sbjct: 16 RFRGFLPVVVDVETAGFNAQTDALLEIAAIPIIYNEEGQFVPGPAHHAHINPFEGANLDR 75 Query: 58 EALKLHGITD------EFLKD-KPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107 +L GI +D K + IF + +QN + HNA FD+GF+ Sbjct: 76 RSLDFIGIDPFNPMRMAMAEDEKTALKRIFKAVNEVRRQQNCTHAVLVGHNAHFDLGFVQ 135 Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R ++P + DT++++ + L C + GI R H AL D+ Sbjct: 136 AAIARTGTKNQNPFHSFSVFDTVTLSAVMF--GQTVLAKSCIQAGIEFDGREAHSALYDT 193 Query: 165 HLLSDVYIKMMVGGSQ 180 ++++ ++ + Sbjct: 194 QKTAELFCYILNKLAP 209 >gi|317052331|ref|YP_004113447.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] gi|316947415|gb|ADU66891.1| Exonuclease RNase T and DNA polymerase III [Desulfurispirillum indicum S5] Length = 166 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 9/169 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 D ET + + IG V + + R + + P + + +HG+T Sbjct: 2 QNFTAIDFETA--NEQRTSACAIGVVVVENRQIV-RQYARLIRPEPMRFASFNTAVHGLT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + P F ++ E +AHN FD+ + L+ P + + Sbjct: 59 AADVAGAPVFGELWPEIAADIVSAPL-LVAHNTSFDMSVLQHCLRSSGIAANIPDA-VCS 116 Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 +A++ P + LN+LCK +GI ++H H AL D+ + + +++ Sbjct: 117 CRMAKKLLPQLVNHKLNTLCKHFGIPLNH---HDALSDAQAAARIILEL 162 >gi|320161625|ref|YP_004174850.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1] gi|319995479|dbj|BAJ64250.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1] Length = 194 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 18/180 (10%) Query: 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGI 65 K I D ETTGL ++ D IIEI V D + ++ + P R P+A+ +HGI Sbjct: 22 KHNPIYLDTETTGLSAQ-DEIIEISIVN--DNGEVV--YESLVRPT-RPIPPDAIAVHGI 75 Query: 66 TDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIID 125 ++E ++ + ++ E + +N +FD+ + R+ D R D Sbjct: 76 SNEDVQKARPWHIVWQEVRPILLNAG-VVVIYNEEFDLRMMQQSHARLGLPWRDRFRTFD 134 Query: 126 TLSIARRKH----PSSR----NDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVG 177 + + + P R + L++ K GIT+ + H A D+ L + M G Sbjct: 135 LMKLYAEYYGEWDPKRRAYRYHSLDAAGKHCGITLPN--AHRATADTLLT-RALLHFMAG 191 >gi|310659214|ref|YP_003936935.1| helicase, uvrd/rep/exonuclease family protein [Clostridium sticklandii DSM 519] gi|308825992|emb|CBH22030.1| putative Helicase, UvrD/REP/exonuclease family protein [Clostridium sticklandii] Length = 828 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 116/245 (47%), Gaps = 32/245 (13%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +VFD+ETTGLD K D+II+I A++ + F+ F+ + + ++ K+H I+DEF Sbjct: 469 VVFDVETTGLDIKKDKIIQIAALKGGKNG-VLQKFERFIKIDY--SVGDSFKIHNISDEF 525 Query: 70 L-KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTL 127 L ++ S +F F Q++ + HN +D+ + ++ I+ + S+I DTL Sbjct: 526 LFQNGVDAKSAIDDFLLF--SQDSVIVGHNVSYDINILKENMKAIDLNIDKLSSKIFDTL 583 Query: 128 SIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY----IKMMVGGSQIN 182 + R+ +P L +L K + +++H H A+ D +V K++ ++ Sbjct: 584 ILTRKTYPGFFSYKLGNLFKEF--SLNHTPTHNAMDDVICTLEVLEKVVAKLLEKQAKRQ 641 Query: 183 FGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE---HDKTIQTLGKNAIWDR 239 F +D F+ + R+ + ++KE+ + H+ I + + ++ Sbjct: 642 AVFTKYQDYFY-----------PIARNLGILAELSKEKRPQDILHEALI----RAGLIEK 686 Query: 240 YISSN 244 Y ++ Sbjct: 687 YSKTS 691 >gi|239502706|ref|ZP_04662016.1| hypothetical protein AbauAB_10367 [Acinetobacter baumannii AB900] Length = 179 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 67/164 (40%), Gaps = 5/164 (3%) Query: 12 FDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D ETTGL+ +N D+IIEI ++ F + P R P+A +HGI+ L Sbjct: 8 VDTETTGLEVENGDKIIEIALIKYDLDGAKLEEFVQRIDPE-RNIDPKAQAVHGISYSDL 66 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 P F I E N + +AHN FD FI EL+R P S T+ Sbjct: 67 IGCPKFVDIAEEVASIVNHA-SLLVAHNFAFDGPFIATELKRAGMTPKKVSS-FCTMEYG 124 Query: 131 RRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 R + L LC G+ + H A D ++ + K Sbjct: 125 RWATFDGKYPKLADLCFSLGVEYDASAAHAASYDVDVMMQCFFK 168 >gi|259507628|ref|ZP_05750528.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] gi|259164807|gb|EEW49361.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] Length = 494 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 11/205 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGIT 66 + FD+ET + I +IG V + + + T F P N P + +HGIT Sbjct: 126 FVAFDVETA--NDDWGSICQIGLVRYENGVEVDST-SWFCTPPEPLNFFEPANIAIHGIT 182 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + +P+F+ + + DF + +AHNA+FD I+ + + Sbjct: 183 AEQVAGEPAFAEVLPKMVDFVG--DLPLVAHNAQFDFTAISRACAAAGIEA-PVFNFGCS 239 Query: 127 LSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L+++R + + L ++ + G+ + R H A D+ + + I++ + Sbjct: 240 LALSRSSRLKFHNHRLPTVAQALGVEL--RKHHDATEDARACAGITIELARRQNHQGGFI 297 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 + F + + RD+ Sbjct: 298 DFIHSQGFTLGSLDTERVYPVLRDR 322 >gi|25028571|ref|NP_738625.1| putative DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] gi|23493856|dbj|BAC18825.1| putative DNA polymerase III epsilon subunit [Corynebacterium efficiens YS-314] Length = 569 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 11/205 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKN--SPEALKLHGIT 66 + FD+ET + I +IG V + + + T F P N P + +HGIT Sbjct: 201 FVAFDVETA--NDDWGSICQIGLVRYENGVEVDST-SWFCTPPEPLNFFEPANIAIHGIT 257 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E + +P+F+ + + DF + +AHNA+FD I+ + + Sbjct: 258 AEQVAGEPAFAEVLPKMVDFVG--DLPLVAHNAQFDFTAISRACAAAGIEA-PVFNFGCS 314 Query: 127 LSIAR-RKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGF 185 L+++R + + L ++ + G+ + R H A D+ + + I++ + Sbjct: 315 LALSRSSRLKFHNHRLPTVAQALGVEL--RKHHDATEDARACAGITIELARRQNHQGGFI 372 Query: 186 KTNEDRFFKEEKKTVPNISLLKRDK 210 + F + + RD+ Sbjct: 373 DFIHSQGFTLGSLDTERVYPVLRDR 397 >gi|319760500|ref|YP_004124438.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF] gi|318039214|gb|ADV33764.1| ribonuclease T [Candidatus Blochmannia vafer str. BVAF] Length = 221 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 25/204 (12%) Query: 2 IRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLC-PNGR 53 K++ R +V D+ET GL++ D ++EI + L + + + G Sbjct: 10 TLKSRFRGFYPVVIDVETAGLNANTDALLEIATITLKMDSDGWLCMDNVLHFNIKSFPGA 69 Query: 54 KNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFFN-------EQNAEWIAHNAKFDVGF 105 P AL L+ I + L+ + +E + N A +AHNA FD F Sbjct: 70 NLHPSALALNKIDPNNPLRFAVTEQEALNEIFKMVNMGIKIHECHKAIIVAHNASFDHSF 129 Query: 106 INAELQR-------INKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKH 158 I A ++R +N +P P DT +++ + L + CK GI H Sbjct: 130 IMAAIERISDTNNNMNVNPFHPFVTFDTAALSGLVF--GQTVLATACKHAGIVFDKSKAH 187 Query: 159 GALLDSHLLSDVYIKMMVGGSQIN 182 AL D+ + ++ +++ ++ Sbjct: 188 SALYDTEKTAILFCELVNIWKRLG 211 >gi|218295556|ref|ZP_03496369.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23] gi|218244188|gb|EED10714.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23] Length = 247 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 +V D+ETTGL + IIE+ V L + FQ P R SP +L GIT E Sbjct: 74 VVLDLETTGLAPGLNEIIEVALVRLEGERRV--AFQSLARP-RRPPSPFIQRLTGITLEE 130 Query: 70 LKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 L+ P + F + + A + NA FD+GF+ L + + +P ++D++ + Sbjct: 131 LEKAPPLEEVL--FRAYPLLEGATLVIQNASFDLGFLRPALGELGLELENP--VVDSIRL 186 Query: 130 ARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL----SDVYIKMMVG 177 ++R R L++L + + ++ R++H ALLD +VY + G Sbjct: 187 SKRAMRGLRRYGLDALSEV--LELAPRAEHRALLDVERTLAVVYEVYYMLTSG 237 >gi|15616394|ref|NP_244699.1| hypothetical protein BH3832 [Bacillus halodurans C-125] gi|10176457|dbj|BAB07551.1| BH3832 [Bacillus halodurans C-125] Length = 265 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 8/184 (4%) Query: 2 IRKNKMRKIVFDIETTGLDS-KNDRIIEIGAVELLDYSK-TNRTFQVFLCPNGRKNSPEA 59 + K+ +VFD+ET+G + DRI+ IGAV+++ + TF + + Sbjct: 73 LPLEKLPVVVFDLETSGFYPDQGDRILSIGAVKVVGLTIQEEETFYSVVHTDTVP-PENI 131 Query: 60 LKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD 119 L+L G++ E L+ P +S+ F+ F +++ +AH+A + F++ + K P + Sbjct: 132 LELTGLSVEELEAAPPLTSVLESFYAFI--RHSTLVAHHASHEKAFMSHVTWQTMKLPFE 189 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGS 179 R+IDT + + P L+ C Y I + +R H A DS + + ++I + Sbjct: 190 -HRVIDTSFLTKIVAPQELVTLDDCCAYYSIPVQNR--HHAFEDSLMTAKLWIAAIAAAR 246 Query: 180 QINF 183 + F Sbjct: 247 EAGF 250 >gi|297184143|gb|ADI20262.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 442 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 9/160 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 MR V DIE TG ++RII++ L + ++ + P + P KL GIT Sbjct: 1 MRFAVIDIECTGGTFGSERIIDVAIFVLENGEVVDQ-LVSLVNPE-KGIDPYVTKLTGIT 58 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 ++ ++ P F + ++ ++AHN FD E + + D +DT Sbjct: 59 NKMVRTAPKFYELAKRVVKI--TEDCTFVAHNISFDYRVFQQEFESMEFD--YHRATLDT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH 165 + R P L ++ K G+ S ++H A D+ Sbjct: 115 IPYCERIFPDWENYGLKTVSKELGLVNS--ARHRAEGDAR 152 >gi|283954255|ref|ZP_06371779.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 414] gi|283794273|gb|EFC33018.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni 414] Length = 253 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 7/145 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 + DIE+TG SK I+EIGAV++ + + R FQ F+ ++ +L GIT E + Sbjct: 74 IVDIESTGGVSKG-EILEIGAVKIQNSKEIGR-FQSFIK--VKEIPENITELTGITYEMV 129 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 ++ P + + S+F F +++ ++AHN +FD FI+ L L +R I T+ A Sbjct: 130 ENAPILAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIEFA 186 Query: 131 RRKHPSSRNDLNSLCKRYGITISHR 155 + S + L L + I +H Sbjct: 187 QCCIESPKYKLEVLKELLSIENTHH 211 >gi|38344168|emb|CAE03499.2| OSJNBa0053K19.7 [Oryza sativa Japonica Group] gi|116309750|emb|CAH66793.1| H0215F08.4 [Oryza sativa Indica Group] gi|125591688|gb|EAZ32038.1| hypothetical protein OsJ_16216 [Oryza sativa Japonica Group] gi|215712387|dbj|BAG94514.1| unnamed protein product [Oryza sativa Japonica Group] Length = 260 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 78/186 (41%), Gaps = 16/186 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG K+ RI+E +L N TF+ + P R L I + Sbjct: 62 ILVFDLETTGYFHKDHRIVEFALCDLSGGK--NSTFETLVNPE-RTVPDYVEHLIKIGTD 118 Query: 69 FL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPLDP 120 + P FS + F + A W+AHN +FD F+ E R + Sbjct: 119 LVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPLPAD 178 Query: 121 SRIIDTLSIARRK----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 DTL +A++ R L +L + YGI +SH H A+ D +LS V+ KM Sbjct: 179 WLFFDTLLLAKKMVKAEGKKRRTSLEALREHYGI-VSHDDAHRAMRDVMILSQVFQKMTF 237 Query: 177 GGSQIN 182 N Sbjct: 238 DLKLTN 243 >gi|313206047|ref|YP_004045224.1| exonuclease rnase t and DNA polymerase iii [Riemerella anatipestifer DSM 15868] gi|312445363|gb|ADQ81718.1| Exonuclease RNase T and DNA polymerase III [Riemerella anatipestifer DSM 15868] Length = 254 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 10/192 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K +FD+ETTG + DRI+EI ++ ++ + T + P A Sbjct: 1 MNLKLHKPLCIFDLETTGTNISKDRIVEICILK-VNTDASRETKTWLVNPEMH-IPAFAT 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118 +HGI+DE +KD P+ I + + + A+ N +FDV + E+ R D L Sbjct: 59 AVHGISDEDVKDAPTLKEIAPKIMEMIS--GADLGGFNSNRFDVPLLAEEMLRAGVDFDL 116 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +++D I + P +L++ + Y + H A D+ +V + Sbjct: 117 SKMKLVDAQVIFHKMEP---RNLSAAYQFY-CNKTLEDAHSAEADTLATFEVLDAQVGKY 172 Query: 179 SQINFGFKTNED 190 ++ + Sbjct: 173 EELPKDINGLSE 184 >gi|228474048|ref|ZP_04058789.1| exonuclease [Capnocytophaga gingivalis ATCC 33624] gi|228274562|gb|EEK13403.1| exonuclease [Capnocytophaga gingivalis ATCC 33624] Length = 257 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 9/176 (5%) Query: 2 IRKNKMRKI-VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 + N R I FD+ETTG D DRI+EI +++ NR + +L P + Sbjct: 1 MELNLTRPICFFDLETTGTDVSRDRIVEISILKVWPNG--NRESKTYLVNPTIPIPPAST 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPLD 119 +HGI+DE + P+F + + ++++ +N +FD+ + EL R D Sbjct: 59 AIHGISDERVAQAPTFKELAKQIHAMI--KDSDLAGYNSDRFDIPLLAEELLRAGVDFDL 116 Query: 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +R+ T+ + H + L++ K Y + H A D+ ++ + Sbjct: 117 KNRV--TVDVQTIFHKMEQRTLSAAYKFY-CKKELDNAHTAAADTEATYEILKAQL 169 >gi|326562712|gb|EGE13014.1| ribonuclease T [Moraxella catarrhalis 103P14B1] gi|326568721|gb|EGE18791.1| ribonuclease T [Moraxella catarrhalis BC8] gi|326574186|gb|EGE24134.1| ribonuclease T [Moraxella catarrhalis 101P30B1] gi|326575625|gb|EGE25549.1| ribonuclease T [Moraxella catarrhalis O35E] Length = 232 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 20/191 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G ++ D ++EI V + + P +G P Sbjct: 15 RFRGFLPVVIDVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEP 74 Query: 58 EALKLHGIT-DEFLKDKPSFSS--IFSEFWDFFN-------EQNAEWIAHNAKFDVGFIN 107 ALK GI D + S + + + HNA FD+GF+N Sbjct: 75 AALKFTGINPDSPFRKAISEDEKTALRRIFKALKALKKEHSCRQCILVGHNAHFDLGFLN 134 Query: 108 AELQRIN---KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R N P ++DT+S A + L C G+ ++ H AL D+ Sbjct: 135 AAIARTNSKNHSPFHTFSVLDTVSFAALTY--GHTVLAKTCMIAGLEFDNQHAHSALYDA 192 Query: 165 HLLSDVYIKMM 175 ++++ ++ Sbjct: 193 QKTAELFCHIV 203 >gi|269467908|gb|EEZ79647.1| DNA polymerase III, epsilon subunit [uncultured SUP05 cluster bacterium] Length = 196 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 19/195 (9%) Query: 1 MIRKNKMR---KIVFDIETTGLDSKNDRIIEIGAVEL-LDYSKT---NRTFQVFLCP-NG 52 M K+++R +V DIET G + K D ++EI A+ + +D + + P G Sbjct: 1 MKIKDRIRGYLPVVVDIETGGFNDKTDAMLEICAIIIGIDDKGVYYPKDSRHFHIEPFKG 60 Query: 53 RKNSPEALKLHGIT-DEFLKDKPSFSSIFSEFWDFFNEQN-------AEWIAHNAKFDVG 104 P ALK +GI + + S E + + A + HNA FD+G Sbjct: 61 ANLDPSALKFNGIDVNNPFRMAVSEKEALGEIFKTARAEMKEEECTRAILVGHNAFFDLG 120 Query: 105 FINAELQRIN-KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 F+ A R K+P IDT+S++ + L + I H AL D Sbjct: 121 FLYAASNRSKLKNPFHQFSTIDTVSLSALYY--GETVLAKAMRVANIEWDDAKAHSALYD 178 Query: 164 SHLLSDVYIKMMVGG 178 + ++++ K+ Sbjct: 179 TKKTAELFCKIFNAQ 193 >gi|66395669|ref|YP_240034.1| ORF013 [Staphylococcus phage 47] gi|209363557|ref|YP_002267975.1| hypothetical protein phi2958PVL_gp05 [Staphylococcus phage phi2958PVL] gi|257428268|ref|ZP_05604666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|282905892|ref|ZP_06313747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282919259|ref|ZP_06326994.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus C427] gi|284024544|ref|ZP_06378942.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp. aureus 132] gi|62636093|gb|AAX91204.1| ORF013 [Staphylococcus phage 47] gi|208973058|dbj|BAG74374.1| hypothetical protein [Staphylococcus phage phi2958PVL] gi|257275109|gb|EEV06596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|282317069|gb|EFB47443.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus C427] gi|282331184|gb|EFB60698.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Btn1260] Length = 306 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 9/172 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D+ET + + I I ++ D + + + P +S +HGI+ Sbjct: 1 MDFVAIDVETA--NEQRSSICSIALLKFQDNKMRDAIY-THINPETYFSS-INTSIHGIS 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E + D P + F + N +AHN FD+ + ++ N PL ++ T Sbjct: 57 EEDVMDSPKMYQMHEAIIRFLD--NHIIVAHNTSFDMYALCDSFKKYNL-PLPSNQYFCT 113 Query: 127 LSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +++ + L L + + I H A D+ + + + ++ Sbjct: 114 YRLSKDLYNLPSYRLQDLAEHFDIKNE--EYHNAFYDAKVCAKIAYNILKDQ 163 >gi|317179729|dbj|BAJ57517.1| DNA polymerase III subunit epsilon [Helicobacter pylori F30] Length = 287 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G I H A D+ ++ ++ I+ Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + + ++T+ L +R K L I Sbjct: 247 FSKCANTLIKRPPRAKHQETLAPFPLFERTKGLLNII 283 >gi|315585931|gb|ADU40312.1| DNA polymerase III subunit epsilon [Helicobacter pylori 35A] Length = 287 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 8/161 (4%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVRGGGIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVY 171 +R S R L+ L + G I H A D+ ++ Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLF 227 >gi|315022360|gb|EFT35388.1| DNA Pol III Epsilon Chain [Riemerella anatipestifer RA-YM] gi|325336512|gb|ADZ12786.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases [Riemerella anatipestifer RA-GD] Length = 254 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 10/192 (5%) Query: 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEAL 60 M K +FD+ETTG + DRI+EI ++ ++ + T + P A Sbjct: 1 MNLKLHKPLCIFDLETTGTNISKDRIVEICILK-VNPDASRETKTWLVNPEMH-IPAFAT 58 Query: 61 KLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDP-L 118 +HGI+DE +KD P+ I + + + A+ N +FDV + E+ R D L Sbjct: 59 AVHGISDEDVKDAPTLKEIAPKIMEMIS--GADLGGFNSNRFDVPLLAEEMLRAGVDFDL 116 Query: 119 DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 +++D I + P +L++ + Y + H A D+ +V + Sbjct: 117 SKMKLVDAQVIFHKMEP---RNLSAAYQFY-CNKTLEDAHSAEADTLATFEVLDAQVGKY 172 Query: 179 SQINFGFKTNED 190 ++ + Sbjct: 173 EELPKDINGLSE 184 >gi|115460648|ref|NP_001053924.1| Os04g0623400 [Oryza sativa Japonica Group] gi|113565495|dbj|BAF15838.1| Os04g0623400 [Oryza sativa Japonica Group] Length = 282 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 78/186 (41%), Gaps = 16/186 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG K+ RI+E +L N TF+ + P R L I + Sbjct: 62 ILVFDLETTGYFHKDHRIVEFALCDLSGGK--NSTFETLVNPE-RTVPDYVEHLIKIGTD 118 Query: 69 FL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHN-AKFDVGFINAELQRINKDPLDP 120 + P FS + F + A W+AHN +FD F+ E R + Sbjct: 119 LVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPLPAD 178 Query: 121 SRIIDTLSIARRK----HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 DTL +A++ R L +L + YGI +SH H A+ D +LS V+ KM Sbjct: 179 WLFFDTLLLAKKMVKAEGKKRRTSLEALREHYGI-VSHDDAHRAMRDVMILSQVFQKMTF 237 Query: 177 GGSQIN 182 N Sbjct: 238 DLKLTN 243 >gi|317181232|dbj|BAJ59018.1| DNA polymerase III subunit epsilon [Helicobacter pylori F32] Length = 287 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G I H A D+ ++ ++ I+ Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + ++T+ L +R K LF I Sbjct: 247 FSKCANTLIKRPPRARHQETLAPFPLFERTKGLFNII 283 >gi|213964373|ref|ZP_03392587.1| exonuclease [Capnocytophaga sputigena Capno] gi|213952985|gb|EEB64353.1| exonuclease [Capnocytophaga sputigena Capno] Length = 164 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 9/167 (5%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + D ET + + IG V + + + T+ + P S ++HG++ Sbjct: 4 FVALDFETA--NQYRSSVCSIGLVFVENNEIVD-TYYQLIKPAPNFYSYFNTQVHGLSQY 60 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 ++ P F +++E ++ +AHN+ FD G + L P + TL Sbjct: 61 DTENAPLFPEVWTEILPKI--KDLPLVAHNSMFDEGCLREVLA-YYALPQHTNPFFCTLR 117 Query: 129 IARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 AR+ P + LN++ +G + + H AL D+ + + +++ Sbjct: 118 AARKSLPQLVNHKLNTVSAYFGFDL--KQHHHALADAEACAHIALEL 162 >gi|262279766|ref|ZP_06057551.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202] gi|262260117|gb|EEY78850.1| ribonuclease T [Acinetobacter calcoaceticus RUH2202] Length = 220 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 20/191 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +++ D ++EI + ++ F + P G Sbjct: 17 RFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDR 76 Query: 58 EALKLHGITD------EFLKD-KPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107 +L GI +D + + IF + +Q+ + HNA FD+GF+ Sbjct: 77 RSLDFIGIDPFNPMRMAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQ 136 Query: 108 AELQRI---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R N++P ++DT++++ + L C + GI + H AL D+ Sbjct: 137 AAIARTSTKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDT 194 Query: 165 HLLSDVYIKMM 175 ++++ ++ Sbjct: 195 QKTAELFCYIL 205 >gi|302059908|ref|ZP_07251449.1| ribonuclease T [Pseudomonas syringae pv. tomato K40] Length = 225 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 17/189 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAV----ELLDYSKTNRTFQVFLCPN-GRKNSPEALKLH 63 +V D+ET G +S D ++EI AV + + T+ + P G AL+ Sbjct: 32 PVVVDVETGGFNSATDALLEIAAVTIGMDERGFVFPEHTYFFRVEPFVGANIEAAALEFT 91 Query: 64 GI-TDEFLKDKPSFSSIFSEF-------WDFFNEQNAEWIAHNAKFDVGFINAELQRI-- 113 GI D L+ S + ++ + A + HNA FD+GF+NA + R+ Sbjct: 92 GIKLDHPLRMAVSEETAMNDIFRGVRKALKANGCKRAVLVGHNASFDLGFVNAAVARMDM 151 Query: 114 NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 ++P P DT ++A + + L C+ GI R H A D+ ++++ Sbjct: 152 KRNPFHPFSSFDTATLAGLAY--GQTVLAKACQAAGIDFDGREAHSARYDTEKPAELFCG 209 Query: 174 MMVGGSQIN 182 ++ ++ Sbjct: 210 IVNRWKEMG 218 >gi|259502770|ref|ZP_05745672.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus antri DSM 16041] gi|259169273|gb|EEW53768.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus antri DSM 16041] Length = 178 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 9/167 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET K + + + + F + P +++HGI Sbjct: 1 MNFIAMDFETA--SGKRYSACSLALTIVRNN-QIADEFYTLINPQT-PFFWRNVQIHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + + P+F ++ F+ + IAHN +FD G + + L+ +P + +DT Sbjct: 57 ERDVANAPTFPEVWEHIKGFYTP-DKLVIAHNNRFDNGVLKSTLEHYGIEP-PAYQTLDT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + +RR P S LN++C I + H H AL D+ +++ + Sbjct: 115 VVSSRRLLPGLSNYKLNTVCAALNIDLHHH--HNALDDAQACANILL 159 >gi|332674336|gb|AEE71153.1| DNA-directed DNA polymerase III epsilon subunit [Helicobacter pylori 83] Length = 287 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 84/217 (38%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G I H A D+ ++ ++ I+ Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPNYIKTTMDLID 246 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + ++T+ L KR K L I Sbjct: 247 FSKCANTLIKRPPRARHQETLAPFPLFKRTKGLLNII 283 >gi|302541826|ref|ZP_07294168.1| putative DNA polymerase III epsilon subunit [Streptomyces hygroscopicus ATCC 53653] gi|302459444|gb|EFL22537.1| putative DNA polymerase III epsilon subunit [Streptomyces himastatinicus ATCC 53653] Length = 239 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 16/185 (8%) Query: 2 IRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALK 61 + ++ I FD+ETTG D + RI+ VE+ R +L +A+ Sbjct: 1 MGWHRELLIGFDLETTGTDPRTARIVTAAVVEVRGGEPIGR--HEWLAAPEVPIPDDAVA 58 Query: 62 LHGITDEFLKDKPSFSSIFSEFWDFFNEQ---NAEWIAHNAKFDVGFINAEL-------- 110 +HGIT+E + E D A +A+NA FD+ + AEL Sbjct: 59 VHGITNERAAAGRPIREVADEIADVLVAHWRAGAPVVAYNAAFDLSLLAAELDRHGLRSL 118 Query: 111 -QRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSD 169 +R+ P P T+ A ++ + L ++C YG+ +H H A D+ Sbjct: 119 GERLGGAPTGPVVDPYTIDRAVDRYRKGKRTLEAVCGEYGV--AHERAHEAGADALAAVR 176 Query: 170 VYIKM 174 V + Sbjct: 177 VACAL 181 >gi|254780064|ref|YP_003058171.1| DNA polymerase III subunit epsilon [Helicobacter pylori B38] gi|254001977|emb|CAX30236.1| DNA polymerase III epsilon subunit [Helicobacter pylori B38] Length = 287 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSAHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G I H A D+ ++ ++ I+ Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + + ++T SL +R K LF I Sbjct: 247 FSKCANTLIKRPPRAKYQETPSPFSLFERTKGLFNII 283 >gi|308062811|gb|ADO04699.1| DNA polymerase III subunit epsilon [Helicobacter pylori Cuz20] Length = 287 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 53/217 (24%), Positives = 84/217 (38%), Gaps = 19/217 (8%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 D+ETTG I+EIGAV++ NR F+ + + +L GI E Sbjct: 75 FIDLETTGSCPLKHEILEIGAVQVKGGEIINR-FETLVK--VKSVPDYIAELTGIAYEDT 131 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + PS E F N+ ++AHNA FD F+ PL + + TL ++ Sbjct: 132 LNAPSVHEALQELRLFLG--NSVFVAHNANFDYNFLGRYFVEKLHCPLLNLK-LCTLDLS 188 Query: 131 RRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQ--------IN 182 +R S R L+ L + G I H A D+ ++ ++ I+ Sbjct: 189 KRAILSMRYSLSFLKELLGFGIE--VSHRAYADALASYKLFEICLLNLPSYIKTTMDLID 246 Query: 183 FGFKTN---EDRFFKEEKKTVPNISLLKRDKPLFTRI 216 F N + ++T+ L +R K L I Sbjct: 247 FSKCANTLIKRPPRARHQETLAPFPLFERTKGLLNII 283 >gi|242077240|ref|XP_002448556.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor] gi|241939739|gb|EES12884.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor] Length = 283 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 17/203 (8%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFD+ETTG ++RI+E +L + TFQ + P R A +L+ IT E Sbjct: 85 FLVFDLETTGFFHVDNRIVEFALRDLSGGK--DCTFQTLINPE-RDVPIYASELNNITTE 141 Query: 69 FL--KDKPSFSSIFSEFWDFFNEQNAE-----WIAHNAK-FDVGFINAELQRINKDPLDP 120 + D P FS + + + A WIAHNAK FDV F+N E R + Sbjct: 142 LVCRPDVPRFSDVLPILLAYVRSRQAPGKPVLWIAHNAKGFDVPFLNQEFDRCSAQVPSD 201 Query: 121 SRIIDTLSIARRK--HPSSRN--DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 +D+L +AR+ +N +L +L +RYG++ S H A+ D L ++ K+ + Sbjct: 202 WLFVDSLRLARKLKKIDGKKNLVNLVALGERYGLS-SEGPSHRAMPDVEALCNILPKITL 260 Query: 177 GGSQINFGFKTNEDRFFKEEKKT 199 + NE F + +K Sbjct: 261 DLK-LTCDDLMNEAMRFSDVRKA 282 >gi|293608826|ref|ZP_06691129.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|299771039|ref|YP_003733065.1| ribonuclease T [Acinetobacter sp. DR1] gi|292829399|gb|EFF87761.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|298701127|gb|ADI91692.1| ribonuclease T [Acinetobacter sp. DR1] gi|325121407|gb|ADY80930.1| ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity) [Acinetobacter calcoaceticus PHEA-2] Length = 220 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 20/191 (10%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELL----DYSKTNRTFQVFLCP-NGRKNSP 57 R +V D+ET G +++ D ++EI + ++ F + P G Sbjct: 17 RFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYDAQGQFVPGPAFHAHINPFEGANLDR 76 Query: 58 EALKLHGITD------EFLKD-KPSFSSIFSEFWDFFNEQNA---EWIAHNAKFDVGFIN 107 +L GI +D + + IF + +Q+ + HNA FD+GF+ Sbjct: 77 RSLDFIGIDPFNPMRIAMAEDERTALRRIFKSVNEVRKQQHCTHAVLVGHNAHFDLGFVQ 136 Query: 108 AELQRI---NKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 A + R N++P ++DT++++ + L C + GI + H AL D+ Sbjct: 137 AAIARTSTKNQNPFHSFSVMDTVTLSAVMF--GQTVLAKACIQAGIEFDGKEAHSALYDT 194 Query: 165 HLLSDVYIKMM 175 ++++ ++ Sbjct: 195 QKTAELFCYIL 205 >gi|329116348|ref|ZP_08245065.1| exonuclease DnaQ family/helicase DinG family [Streptococcus parauberis NCFD 2020] gi|326906753|gb|EGE53667.1| exonuclease DnaQ family/helicase DinG family [Streptococcus parauberis NCFD 2020] Length = 834 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 14/177 (7%) Query: 1 MIRKNKMRKIVFDIETT--GLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPE 58 M ++ + V D+E T G +K II++G V +++ K T+Q + P+ S Sbjct: 15 MTKEKNPKYAVIDLEATSAGTAAK---IIQVGIV-IVEGGKITNTYQTDVNPH-EDLSDH 69 Query: 59 ALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL 118 L GI+D+ L P FS I +D ++ ++AHN KFD + L + Sbjct: 70 IKLLTGISDQQLASAPEFSQIAGTIFDLI--KDCIFVAHNVKFDANLLAEALFFEGFELR 127 Query: 119 DPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 P +DT+ +A+ P + +L L + +S H A+ D+ +++ + + Sbjct: 128 TP--RVDTVELAQVFFPHLEKYNLTYLSTELNLELSD--AHTAIADAMATANLLLVL 180 >gi|326522268|dbj|BAK07596.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 323 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 19/180 (10%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 +VFDIETTG + DRIIE +L N TFQ + P + +HGI+ Sbjct: 123 ILVFDIETTGFSRRGDRIIEFAVRDLTGGK--NSTFQTLINPEREV---KNAAVHGISTN 177 Query: 69 FL--KDKPSFSSIFSEFWDF-----FNEQNAEWIAHN-AKFDVGFINAELQRINKDPLDP 120 + D P F + + W+AHN FDV F+ E QR ++ Sbjct: 178 MVCSSDIPRFGEFIPILLQYVWSRQVAGKPVMWVAHNGKTFDVPFLIFEFQRCKQEMPGD 237 Query: 121 SRIIDTLSIARRKHPS-----SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 +DTL IA++ S S + +L + Y I + + H A+ D L V K+ Sbjct: 238 WLFVDTLPIAKQLVDSNGKKISSASMKNLVEHYKIPVDGK-AHRAMRDVTALCYVLQKLT 296 >gi|72162746|ref|YP_290403.1| exonuclease [Thermobifida fusca YX] gi|71916478|gb|AAZ56380.1| exonuclease [Thermobifida fusca YX] Length = 313 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 76/224 (33%), Gaps = 14/224 (6%) Query: 6 KMRKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64 + V D+ETTGL + R+ EI V + R F + P + + HG Sbjct: 28 DLEYAVVDVETTGLRPEGGARVCEIAVVRMRGDGTVLREFTTLVDP---RIKVTGQEFHG 84 Query: 65 ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124 I + P + + +E F+ A + HN F+ F+ +E D + Sbjct: 85 IAQGDVVGAPRAAELVAELCALFS--GAVVVGHNLDFENAFLTSEFVPAGLP--DGLPGL 140 Query: 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 TL R + R L G H AL D+ + + +++ F Sbjct: 141 CTLRTLRSQVHLERYSLARASHALGGDWPTGQ-HTALGDARACAQLLAELLHNAPGPLFY 199 Query: 185 FK----TNEDRFFKEEKKTVPNISLLKR-DKPLFTRITKEELDE 223 E+R + + K + + R P + EL Sbjct: 200 VGPEPVVLEERPQQAQLKPRRSAAGSVRLAGPRPRAVPVRELRA 243 >gi|227529584|ref|ZP_03959633.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC 49540] gi|227350483|gb|EEJ40774.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC 49540] Length = 178 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 9/167 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET + K + + D SK F + P +++HGI Sbjct: 1 MNFVAMDFETA--NGKRYSACSLALTIVRD-SKIADEFYTLINPQT-DFFWRNVQIHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 +E ++D P+F ++ F+ + IAHN FD + L P + +DT Sbjct: 57 EEDVQDAPTFPEVWQHIKQFYRPEQLV-IAHNNSFDNSVLKNTLLHYGIQP-PTFQTLDT 114 Query: 127 LSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 + +RR P LN++C I + H H AL D+ +++ + Sbjct: 115 VKSSRRLIPGLDNYRLNTVCDALQIDLHHH--HNALDDAQACANILL 159 >gi|188533646|ref|YP_001907443.1| exodeoxyribonuclease X [Erwinia tasmaniensis Et1/99] gi|188028688|emb|CAO96550.1| DNA exonuclease X [Erwinia tasmaniensis Et1/99] Length = 221 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 23/169 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET GL I+E+ +V++++ + + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCGLQGG---IVEVASVDVING-QIANPMSDLISPD-RPISRQAMDVHKITEAMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 + KP+ + + ++AHNA FD + P I T+++A Sbjct: 59 RGKPTIEQAIGRYH-----GSPYYVAHNASFDRRML----------PEMNGEWICTMTLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITIS---HRSKHGALLDSHLLSDVYIKMMV 176 RR P + +L + + +S H AL D ++ + + +++M Sbjct: 104 RRLWPGLKYGNEALRQALRLDVSPPPELHAHRALYDCYVTAALLVRIMT 152 >gi|331701662|ref|YP_004398621.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri NRRL B-30929] gi|329129005|gb|AEB73558.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri NRRL B-30929] Length = 177 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 9/167 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M + D ET ++K I + D TN F + P S + +HGI Sbjct: 1 MNFVAMDFETA--NAKRASACSIALAIVRDNQITNE-FYSLINPE-MDFSWRNINVHGIH 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 + + D P+F ++ F+ N IAHNA FD + L+R P +DT Sbjct: 57 ERDVVDAPTFPEVWRHIQPLFSA-NKLVIAHNASFDNSVLKRTLERYEVQP-PHYLTLDT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 L +++ +P+ + LN+LC + I + H H AL DS +++ + Sbjct: 115 LRTSKQFYPTLENHKLNTLCDKLNIVLKHH--HNALDDSVACANILL 159 >gi|254443961|ref|ZP_05057437.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] gi|198258269|gb|EDY82577.1| exonuclease, DNA polymerase III, epsilon subunit family [Verrucomicrobiae bacterium DG1235] Length = 220 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 11/171 (6%) Query: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSK--TNRTFQVFLCPNGRKNSPEALKLHGITD 67 + FD+ETTGL K + I +I V L +F ++ P G+ KL + D Sbjct: 8 VAFDLETTGLRYKQEEITQIAGVR-LGGVIMNVEDSFCTYVNP-GKPIPENIQKLTRVRD 65 Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDT 126 E +KD P F D+ +A H+ +FD FI ++ + R IDT Sbjct: 66 EDVKDAPKPLEALQAFSDWVG--DATLFGHDIYRFDFNFIRKYARQEGVET-RTVRFIDT 122 Query: 127 LSIARRKHPS---SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 + I P RN L+ + +R +S +H A D+ LL+ +Y ++ Sbjct: 123 MDIFEVMWPDFSRLRNSLDDIAERLSAGLSSMRRHDAQSDAILLAHIYQRI 173 >gi|301066020|ref|YP_003788043.1| DNA polymerase III subunit epsilon [Lactobacillus casei str. Zhang] gi|300438427|gb|ADK18193.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease [Lactobacillus casei str. Zhang] Length = 180 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 9/168 (5%) Query: 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 M I D ET + K + V ++ +K +F + P + + + +HGIT Sbjct: 1 MDFIAMDFETA--NRKRASACSLALV-VVQQNKVVDSFYTLINPQ-MQFDAQNIHIHGIT 56 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT 126 E ++D+P+F ++ F+ AHNA FDV + L R ++IDT Sbjct: 57 PEMVQDQPTFDQVWPHIQMFYTP-GRIVTAHNAPFDVSVMRLTLDRYGI-AAPRYQVIDT 114 Query: 127 LSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 + +R+ P + L+++ I + H H AL DS+ + + I Sbjct: 115 VKTSRQFLPKLPNHRLDTVSAALHIPLEHH--HNALADSYACARILIA 160 >gi|88811452|ref|ZP_01126707.1| ribonuclease T [Nitrococcus mobilis Nb-231] gi|88791341|gb|EAR22453.1| ribonuclease T [Nitrococcus mobilis Nb-231] Length = 222 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 77/195 (39%), Gaps = 17/195 (8%) Query: 3 RKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSK----TNRTFQVFLCP-NGRKNSP 57 R +V DIET GL++ D ++++ AV + T+ + P +G P Sbjct: 21 RFRSFLPVVVDIETGGLNASTDALLQLAAVIVRMDEDKRVFPAGTYSTHVEPFDGANIDP 80 Query: 58 EALKLHGITDEF-LKDKPSFSSIFSEFWDFF-------NEQNAEWIAHNAKFDVGFINAE 109 ++L+ + I L+ + A + HN+ FD+ F+NA Sbjct: 81 KSLEFNRIDPNHPLRMAKPEEEALRHIFRPIRREIRETGCTRAILVGHNSWFDLCFLNAA 140 Query: 110 LQRIN--KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 + R ++P P DT ++ + L K G + R H A+ D+ Sbjct: 141 VARTGIRRNPFHPFTSFDTATLGGLAF--GQTVLARAVKASGASWDGREAHSAIYDAEKT 198 Query: 168 SDVYIKMMVGGSQIN 182 ++++ ++ ++N Sbjct: 199 AELFCTIVNRWDRLN 213 >gi|284925719|gb|ADC28071.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp. jejuni IA3902] Length = 256 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 7/147 (4%) Query: 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDE 68 + DIE+TG SK I+EIGAV++ + + R FQ F+ ++ +L GIT E Sbjct: 72 FCIVDIESTGGVSKG-EILEIGAVKIQNSKEIGR-FQSFVK--VKEIPKNITELTGITYE 127 Query: 69 FLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLS 128 +++ S + + S+F F +++ ++AHN +FD FI+ L L +R I T+ Sbjct: 128 MVENASSLAKVLSDFRLFL--KDSIFVAHNVRFDYSFISKALNECGFGILL-NRRICTIE 184 Query: 129 IARRKHPSSRNDLNSLCKRYGITISHR 155 A+ S + L L + G+ +H Sbjct: 185 FAQCCIESPKYKLEVLKEFLGVENTHH 211 >gi|225850393|ref|YP_002730627.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] gi|225646485|gb|ACO04671.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] Length = 206 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 13/179 (7%) Query: 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRT-FQVFLCPNGRKNSPEALKLH 63 NK+ FD+ETTGLD + D II IGAV++ + T F + P R E + +H Sbjct: 31 NKITFCSFDLETTGLDVEKDEIISIGAVKIKEMKIDLSTSFYRIVKPE-RIPEKENILIH 89 Query: 64 GITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQR-INKDPLDPSR 122 IT +K + +F ++ + I + FD+ ++ Q+ L+P Sbjct: 90 SITASEMKKGEDIRDVLPKFLEYI--KGTVLIGYFVSFDISMLSKYTQKFYGFPILNPYI 147 Query: 123 IIDTLSIARR------KHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 + L I ++ L+ + + I + R +H AL DS + +++ +M Sbjct: 148 DVSQLYIKKKVKSYTPYEKIKEKSLDQIAEELNIPV--RKRHNALYDSITTALIFLSLM 204 >gi|295095557|emb|CBK84647.1| Exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 220 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 23/168 (13%) Query: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 V D ET L I+E+ +V+++D N + P+ R S +A+ +H IT+ + Sbjct: 4 VIDTETCDLQGG---IVEVASVDVIDGKIVNPMSH-LVRPD-RPISAQAMAIHRITESMV 58 Query: 71 KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA 130 DKP I + ++AHNA FD + P P I T+ +A Sbjct: 59 ADKPWIEEIIP-----LYHGSQWYVAHNASFDRRVL----------PEMPGEWICTMKLA 103 Query: 131 RRKHPSSRNDLNSLCKRYGITI---SHRSKHGALLDSHLLSDVYIKMM 175 RR P + +L K