RPSBLAST alignment for GI: 254780818 and conserved domain: TIGR00573

>gnl|CDD|129663 TIGR00573, dnaq, exonuclease, DNA polymerase III, epsilon subunit family. All proteins in this family for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the n-terminal region of DinG from some low GC gram positive bacteria. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 217

 Score =  160 bits (407), Expect = 3e-40
 Identities = 82/201 (40%), Positives = 117/201 (58%), Gaps = 9/201 (4%)

Query: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70
             D ETTGL + +D IIEIGAVE+++   T   F  ++ P+ R   P+A+K+HGITD+ L
Sbjct: 11  TGDNETTGLYAGHD-IIEIGAVEIINRRITGNKFHTYIKPD-RPIDPDAIKIHGITDDML 68

Query: 71  KDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDT---L 127
           KDKP F  I  +F D+     AE + HNA FDVGF+N E  ++ K     + +IDT   L
Sbjct: 69  KDKPDFKEIAEDFADYIR--GAELVIHNASFDVGFLNYEFSKLYKVEPKTNDVIDTTDTL 126

Query: 128 SIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINFGFKT 187
             AR + P  RN L++LCKRY IT SHR+ HGAL D+ +L+ +Y  +M G  Q  +G   
Sbjct: 127 QYARPEFPGKRNTLDALCKRYEITNSHRALHGALADAFILAKLY-LVMTGK-QTKYGENE 184

Query: 188 NEDRFFKEEKKTVPNISLLKR 208
            +        K++    +L +
Sbjct: 185 GQQSRPYHAIKSIVKKDMLLK 205