>gnl|CDD|130473 TIGR01406, dnaQ_proteo, DNA polymerase III, epsilon subunit, Proteobacterial. This model represents DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease domain as described in pfam model pfam00929. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are excluded from this model, as are smaller proteins, also outside the Proteobacteria, that are similar in size to the epsilon subunit but as different in sequence as are the epsilon-like regions found in Gram-positive bacteria. Length = 225

Score = 218 bits (557), Expect = 1e-57 Identities = 97/232 (41%), Positives = 134/232 (57%), Gaps = 11/232 (4%) Query: 8 RKIVFDIETTGLD-SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGIT 66 R+I+ D ETTGLD RI+EIGAVEL++ T F V++ P R EA K+HGIT Sbjct: 1 RQIILDTETTGLDPKGGHRIVEIGAVELVNRMLTGDNFHVYVNP-ERDMPAEAAKVHGIT 59 Query: 67 DEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN---KDPLDPSRI 123 DEFL DKP F I EF DF +E + HNA FDVGF+N EL+R+ K + R+ Sbjct: 60 DEFLADKPKFKEIADEFLDFIG--GSELVIHNAAFDVGFLNYELERLGPTIKKIGEFCRV 117 Query: 124 IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 IDTL++AR + P RN L++LCKR+ + SHR+ HGALLD+HLL++VY+ + G + Sbjct: 118 IDTLAMARERFPGQRNSLDALCKRFKVDNSHRTLHGALLDAHLLAEVYLALTGGQESLLE 177 Query: 184 GFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGKNA 235 ++N K K + L + L + EL H+ + L K + Sbjct: 178 LAESNSGEAAKPSKS--AEMKLGATLRVL--APREAELQAHEAYLDKLLKKS 225

RPSBLAST alignment for GI: 254780818 and conserved domain: TIGR01406