RPSBLAST alignment for GI: 254780818 and conserved domain: TIGR01407
>gnl|CDD|162341 TIGR01407, dinG_rel, DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. Length = 850
Score = 78.3 bits (193), Expect = 2e-15
Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 8/168 (4%)
Query: 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITD 67
R V D+ETTG D+II+IG V +++ + TF + PN P +L GI+D
Sbjct: 1 RYAVVDLETTGTQLSFDKIIQIGIV-VVEDGEIVDTFHTDVNPN-EPIPPFIQELTGISD 58
Query: 68 EFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL 127
L+ P FS + E +D ++ ++AHN FD+ F+ L+ +PL P IDT+
Sbjct: 59 NMLQQAPYFSQVAQEIYDLL--EDGIFVAHNVHFDLNFLAKALKDCGYEPL-PKPRIDTV 115
Query: 128 SIARRKHPSSRN-DLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174
+A+ P+ + L+ L + G+T H + H A D+ +++ + +
Sbjct: 116 ELAQIFFPTEESYQLSELSEALGLT--HENPHRADSDAQATAELLLLL 161