HHsearch alignment for GI: 254780820 and conserved domain: COG1030

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].
Probab=95.59  E-value=0.1  Score=33.89  Aligned_cols=137  Identities=22%  Similarity=0.261  Sum_probs=90.3

Q ss_pred             ECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             04149999983303185357789999999999998628-96899976888776521246777788999999998629988
Q gi|254780820|r  118 RDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEK-CPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPY  196 (284)
Q Consensus       118 ~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~-~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~  196 (284)
T Consensus        24 ~~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGG----l~~sm~~iv~------~i~~s~vPV   88 (436)
T COG1030          24 AEKKVYVIEID-----GAIDPASADYLQRALQSAEEENAAAVVLELDTPGG----LLDSMRQIVR------AILNSPVPV   88 (436)
T ss_pred             CCCEEEEEEEC-----CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC----HHHHHHHHHH------HHHCCCCCE
T ss_conf             67718999925-----74277799999999999985798479999608972----6799999999------987599977


Q ss_pred             EEEECCCCCCEEEEEE----CCCCCEEEEECCCEEECCCHHHHHHHHCCCCC----------------------------
Q ss_conf             9985676420111120----14685255531421102327887876367788----------------------------
Q gi|254780820|r  197 IVVLTNPTTGGVTASY----AMLGDIHLAEPGAEIGFAGRRVIEQTVREKLP----------------------------  244 (284)
Q Consensus       197 I~vl~~pt~GGv~AS~----a~lgDiiiaep~a~igFaG~rVi~~t~~~~lp----------------------------  244 (284)
T Consensus        89 ~~yv-~p~-ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~  166 (436)
T COG1030          89 IGYV-VPD-GARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTWAERFVT  166 (436)
T ss_pred             EEEE-CCC-CCCHHCHHHHHHHHCCHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             9999-489-85110403279885676551798743546502479988550143789999999999983998699999864


Q ss_pred             -CCCHHHHHHHHCCCCCEEEC-HHHHHHH
Q ss_conf             -72021599996898353735-8999999
Q gi|254780820|r  245 -DGFQRSEYLVEHGMIDRIVH-RHDIPEV  271 (284)
Q Consensus       245 -~~fqtae~l~~~G~iD~iv~-r~~l~~~  271 (284)
T Consensus       167 ~~~~l~a~eA~~~~vid~iA~~~~ell~~  195 (436)
T COG1030         167 ENLSLTAEEALRQGVIDLIARDLNELLKK  195 (436)
T ss_pred             HCCCCCHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             21577866798559400355878999987