HHsearch alignment for GI: 254780820 and conserved domain: PRK03580
>PRK03580 carnitinyl-CoA dehydratase; Provisional.
Probab=97.69 E-value=0.0084 Score=41.90 Aligned_cols=164 Identities=13% Similarity=0.169 Sum_probs=101.1
Q ss_pred EECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCC------CCCCCCCHHH----HHHHHHHHHH
Q ss_conf 70414999998330318535778999999999999862-89689997688------8776521246----7777889999
Q gi|254780820|r 117 VRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASG------GARMQEGILS----LMQLPRTTIA 185 (284)
Q Consensus 117 I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SG------GaRMqEG~~s----L~qMakt~~a 185 (284)
T Consensus 10 ~~g~Va~itlnrP~--~NAl~~~m~~~l~~al~~~~~d~~vrvvvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 87 (262)
T PRK03580 10 RNGSILEITLDRPK--ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAG 87 (262)
T ss_pred EECCEEEEEECCCC--CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999955876--4779999999999999998619996599996699960426710766534786431342667899
Q ss_pred HHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHH-----------HHHHHHCCC------CCCCCH
Q ss_conf 999986299889985676420111120146852555314211023278-----------878763677------887202
Q gi|254780820|r 186 INMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRR-----------VIEQTVREK------LPDGFQ 248 (284)
Q Consensus 186 ~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~r-----------Vi~~t~~~~------lp~~fq 248 (284)
T Consensus 88 ~~~l~~~~kPvIaaV~G~a~GgG~-~LalacD~~ia~~~a~f~~pe~~lGl~p~~g~~~~l~r~iG~~~A~~l~ltg~~~ 166 (262)
T PRK03580 88 LTEIFDLDKPVIAAVNGYAFGGGF-ELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIVNEMLMTGRRM 166 (262)
T ss_pred HHHHHHCCCCEEEEECCEEEEHHH-HHHHHCCEEEECCCCCEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999981999999998686661869-9988527024147876515776036788854999999997099999998718987
Q ss_pred HHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC
Q ss_conf 15999968983537358999999999999972378
Q gi|254780820|r 249 RSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284)
Q Consensus 249 tae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284)
T Consensus 167 ~a~eA~~~Glv~~vv~~~~l~~~a~~la~~la~~~ 201 (262)
T PRK03580 167 DAEEALRWGLVNRVVSQAELMDRARELAQQLVNSA 201 (262)
T ss_pred CHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 59999887991054384699999999999998489