HHsearch alignment for GI: 254780820 and conserved domain: PRK11778
>PRK11778 putative periplasmic protease; Provisional.
Probab=95.98 E-value=0.044 Score=36.59 Aligned_cols=95 Identities=28% Similarity=0.333 Sum_probs=58.9
Q ss_pred EEEEEEEECHHHCCCCCHHH----HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 49999983303185357789----99999999999862896899976888776521246777788999999998629988
Q gi|254780820|r 121 KLVAVVHEFSFIGGSIGIAA----GEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPY 196 (284)
Q Consensus 121 ~vvv~~~df~F~GGSmG~~~----geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~ 196 (284)
T Consensus 68 ~~r~fvldF~---Gdi~As~v~~LReeitaiL~~a~~~D-eV~~rles~GG~v~~yglaa-------sql~rlr~~~i~l 136 (317)
T PRK11778 68 KPRVFVLDFK---GDIDASEVESLREEITAILAVAKPGD-EVLLRLESPGGVVHGYGLAA-------SQLQRLRDAGIPL 136 (317)
T ss_pred CCEEEEEECC---CCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEEECCCCEEEHHHHHH-------HHHHHHHHCCCCE
T ss_conf 8639999546---86037767778999999997487898-69999978995666057799-------9999998679928
Q ss_pred EEEECCCCCCEEEEE----ECCCCCEEEEECCCEEECCC
Q ss_conf 998567642011112----01468525553142110232
Q gi|254780820|r 197 IVVLTNPTTGGVTAS----YAMLGDIHLAEPGAEIGFAG 231 (284)
Q Consensus 197 I~vl~~pt~GGv~AS----~a~lgDiiiaep~a~igFaG 231 (284)
T Consensus 137 tv~v-----d~VAASGGY~mAc~ADkIvA~P~tItGSIG 170 (317)
T PRK11778 137 TVCV-----DKVAASGGYMMACVADKIIAAPFAIVGSIG 170 (317)
T ss_pred EEEE-----EEEECCCCEEEEECCCEEEECCCCEEEEEE
T ss_conf 9997-----013024302265218879987863465321