HHsearch alignment for GI: 254780820 and conserved domain: TIGR01117
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit; InterPro: IPR005783 This family describes methymalonyl-CoA decarboxylase alpha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.; GO: 0004492 methylmalonyl-CoA decarboxylase activity, 0006814 sodium ion transport.
Probab=99.95 E-value=1.4e-27 Score=225.08 Aligned_cols=213 Identities=26% Similarity=0.381 Sum_probs=176.0
Q ss_pred CEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCC-CCCEEEEEEEEECEEEEEEEEECHHH
Q ss_conf 62437999999845565420133456870201867642035667766642166-77169998787041499999833031
Q gi|254780820|r 54 HMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGL-IDSIVSAVGNVRDFKLVAVVHEFSFI 132 (284)
Q Consensus 54 H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~-~davv~G~G~I~G~~vvv~~~df~F~ 132 (284)
T Consensus 28 ~Gk~tarerl~~l~d~~~fve~~~fv~~-r~~~fG~------------~k~~lP~~~vvtGyG~~~Gr~v~~f~qdftv~ 94 (513)
T TIGR01117 28 QGKLTARERLELLLDEGSFVELDAFVKH-RCTNFGL------------DKKELPAEGVVTGYGTVDGRLVYVFAQDFTVE 94 (513)
T ss_pred HCCHHHHHHHHHHHCCCCEEHHHHHHHH-HHHHCCC------------CHHHCCCCCEEEEEEEECCEEEEEEECCEEEE
T ss_conf 0541388899987088742217789977-5453066------------31217866436520244365999984140440
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE
Q ss_conf 85357789999999999998628968999768887765212467777889999999986299889985676420111120
Q gi|254780820|r 133 GGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASY 212 (284)
Q Consensus 133 GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~ 212 (284)
T Consensus 95 GG~lGemh~~ki~~~~~~a~~~G~P~vGlndsGGariqe~vd~l~GyG~if~~-n~~~sGv~Pqi~~i~GPCaGGavysP 173 (513)
T TIGR01117 95 GGSLGEMHAAKIVKILDLALKLGAPVVGLNDSGGARIQEAVDALKGYGDIFYR-NTIASGVVPQISVILGPCAGGAVYSP 173 (513)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCEEEEECCCCCCCCCCH
T ss_conf 67414577899999999998629867885078762256666665444578764-21102532000012415777531110
Q ss_pred CCCCCEEEEE--CCCEEECCCHHHHHHHHCCCC-CCCCHHHHHHH-HCCCCCEEEC-HHHHHHHHHHHHHHHHC
Q ss_conf 1468525553--142110232788787636778-87202159999-6898353735-89999999999999723
Q gi|254780820|r 213 AMLGDIHLAE--PGAEIGFAGRRVIEQTVREKL-PDGFQRSEYLV-EHGMIDRIVH-RHDIPEVVSSLCKILTK 281 (284)
Q Consensus 213 a~lgDiiiae--p~a~igFaG~rVi~~t~~~~l-p~~fqtae~l~-~~G~iD~iv~-r~~l~~~i~~ll~il~~ 281 (284)
T Consensus 174 a-~~dfi~m~~~p~~~mfitGP~v~k~vtG~ev~~~~lGG~~~h~~~sG~~~~~~~~~~~~~~~~~~ll~~lP~ 246 (513)
T TIGR01117 174 A-LTDFILMVDNPTSQMFITGPQVIKTVTGEEVTAEDLGGAMAHASKSGVAHLIAEDDEDVIALIRRLLSFLPS 246 (513)
T ss_pred H-HHCEEEEEECCCEEEEEECCHHEEEECCCCCCHHHHCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 0-200243552674168872502200004651014341203444311560222004448899999999863462