HHsearch alignment for GI: 254780820 and conserved domain: TIGR01117

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit; InterPro: IPR005783 This family describes methymalonyl-CoA decarboxylase alpha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.; GO: 0004492 methylmalonyl-CoA decarboxylase activity, 0006814 sodium ion transport.
Probab=98.73  E-value=2.4e-07  Score=75.55  Aligned_cols=207  Identities=19%  Similarity=0.257  Sum_probs=158.2

Q ss_pred             CCCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEE
Q ss_conf             83889989624379999998455654201334568702018676420356677666421667716999878704149999
Q gi|254780820|r   46 WVISSSDFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAV  125 (284)
Q Consensus        46 ~VCp~C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~  125 (284)
T Consensus       270 ~~~Pd-~~~~~y~~~~vi~~~vdn~~~~e~~P~--------------y-------------~~n~~~~f~r~~G~~vGi~  321 (513)
T TIGR01117       270 DLLPD-DPNKPYDVRDVITAIVDNGEYLELQPY--------------Y-------------AKNIVVGFARIDGKSVGIV  321 (513)
T ss_pred             HHCCC-CCCCCCCHHHHHHHHHCCCCCEEECCC--------------C-------------CCCEEEEEEEECCEEEEEE
T ss_conf             63688-877753289999987256320231553--------------1-------------3320456544247046787


Q ss_pred             EEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC---CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9833031853577899999999999986289689997688877---6521246777788999999998629988998567
Q gi|254780820|r  126 VHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGAR---MQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTN  202 (284)
Q Consensus       126 ~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaR---MqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~  202 (284)
T Consensus       322 an~P~~~aG~ld~~~~dk~~~f~r~CdafniP~~~~vdvPG~lPG~~qe~~GiirhGak~lya---y~eatvP~~t~i~r  398 (513)
T TIGR01117       322 ANQPKVLAGCLDIDSSDKIARFVRFCDAFNIPIVTFVDVPGFLPGVDQEYGGIIRHGAKVLYA---YSEATVPKVTIILR  398 (513)
T ss_pred             ECCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH---HHHCCCCEEEEEEE
T ss_conf             448530333552143202446654310005753567625775787640003222210102001---11024555677764


Q ss_pred             CCCCEEEEEECC--C-CCEEEEECCCEEECCCHHHHHHHH-CCC-----CCCCC------------HHHHHHHHCCCCCE
Q ss_conf             642011112014--6-852555314211023278878763-677-----88720------------21599996898353
Q gi|254780820|r  203 PTTGGVTASYAM--L-GDIHLAEPGAEIGFAGRRVIEQTV-REK-----LPDGF------------QRSEYLVEHGMIDR  261 (284)
Q Consensus       203 pt~GGv~AS~a~--l-gDiiiaep~a~igFaG~rVi~~t~-~~~-----lp~~f------------qtae~l~~~G~iD~  261 (284)
T Consensus       399 kayGG~y~am~s~~lGad~v~a~Pt~eiavmGP~Ga~~i~f~k~i~~~~~p~~~~~~k~~~y~~~fa~Py~aa~rG~~d~  478 (513)
T TIGR01117       399 KAYGGAYLAMGSKDLGADVVYAWPTAEIAVMGPEGAANIIFRKDIKEAKDPKALRKQKIAEYREKFANPYKAAARGYVDD  478 (513)
T ss_pred             ECCCCCEEEHHHHHHCCCEEEECCCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCHHH
T ss_conf             12464000000021065447751653036416520355654553530026578999999999986205256762573111


Q ss_pred             EECHHHHHHHHHHHHHHHHCCC
Q ss_conf             7358999999999999972378
Q gi|254780820|r  262 IVHRHDIPEVVSSLCKILTKSV  283 (284)
Q Consensus       262 iv~r~~l~~~i~~ll~il~~~~  283 (284)
T Consensus       479 vi~P~~~r~~~~~al~~l~~kr  500 (513)
T TIGR01117       479 VIEPKETRAKVVSALEILESKR  500 (513)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHH
T ss_conf             1271457999999999998766