HHsearch alignment for GI: 254780820 and conserved domain: TIGR01117
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit; InterPro: IPR005783 This family describes methymalonyl-CoA decarboxylase alpha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.; GO: 0004492 methylmalonyl-CoA decarboxylase activity, 0006814 sodium ion transport.
Probab=98.73 E-value=2.4e-07 Score=75.55 Aligned_cols=207 Identities=19% Similarity=0.257 Sum_probs=158.2
Q ss_pred CCCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEE
Q ss_conf 83889989624379999998455654201334568702018676420356677666421667716999878704149999
Q gi|254780820|r 46 WVISSSDFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAV 125 (284)
Q Consensus 46 ~VCp~C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~ 125 (284)
T Consensus 270 ~~~Pd-~~~~~y~~~~vi~~~vdn~~~~e~~P~--------------y-------------~~n~~~~f~r~~G~~vGi~ 321 (513)
T TIGR01117 270 DLLPD-DPNKPYDVRDVITAIVDNGEYLELQPY--------------Y-------------AKNIVVGFARIDGKSVGIV 321 (513)
T ss_pred HHCCC-CCCCCCCHHHHHHHHHCCCCCEEECCC--------------C-------------CCCEEEEEEEECCEEEEEE
T ss_conf 63688-877753289999987256320231553--------------1-------------3320456544247046787
Q ss_pred EEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC---CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9833031853577899999999999986289689997688877---6521246777788999999998629988998567
Q gi|254780820|r 126 VHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGAR---MQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTN 202 (284)
Q Consensus 126 ~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaR---MqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~ 202 (284)
T Consensus 322 an~P~~~aG~ld~~~~dk~~~f~r~CdafniP~~~~vdvPG~lPG~~qe~~GiirhGak~lya---y~eatvP~~t~i~r 398 (513)
T TIGR01117 322 ANQPKVLAGCLDIDSSDKIARFVRFCDAFNIPIVTFVDVPGFLPGVDQEYGGIIRHGAKVLYA---YSEATVPKVTIILR 398 (513)
T ss_pred ECCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH---HHHCCCCEEEEEEE
T ss_conf 448530333552143202446654310005753567625775787640003222210102001---11024555677764
Q ss_pred CCCCEEEEEECC--C-CCEEEEECCCEEECCCHHHHHHHH-CCC-----CCCCC------------HHHHHHHHCCCCCE
Q ss_conf 642011112014--6-852555314211023278878763-677-----88720------------21599996898353
Q gi|254780820|r 203 PTTGGVTASYAM--L-GDIHLAEPGAEIGFAGRRVIEQTV-REK-----LPDGF------------QRSEYLVEHGMIDR 261 (284)
Q Consensus 203 pt~GGv~AS~a~--l-gDiiiaep~a~igFaG~rVi~~t~-~~~-----lp~~f------------qtae~l~~~G~iD~ 261 (284)
T Consensus 399 kayGG~y~am~s~~lGad~v~a~Pt~eiavmGP~Ga~~i~f~k~i~~~~~p~~~~~~k~~~y~~~fa~Py~aa~rG~~d~ 478 (513)
T TIGR01117 399 KAYGGAYLAMGSKDLGADVVYAWPTAEIAVMGPEGAANIIFRKDIKEAKDPKALRKQKIAEYREKFANPYKAAARGYVDD 478 (513)
T ss_pred ECCCCCEEEHHHHHHCCCEEEECCCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCHHH
T ss_conf 12464000000021065447751653036416520355654553530026578999999999986205256762573111
Q ss_pred EECHHHHHHHHHHHHHHHHCCC
Q ss_conf 7358999999999999972378
Q gi|254780820|r 262 IVHRHDIPEVVSSLCKILTKSV 283 (284)
Q Consensus 262 iv~r~~l~~~i~~ll~il~~~~ 283 (284)
T Consensus 479 vi~P~~~r~~~~~al~~l~~kr 500 (513)
T TIGR01117 479 VIEPKETRAKVVSALEILESKR 500 (513)
T ss_pred HCCCHHHHHHHHHHHHHHHHHH
T ss_conf 1271457999999999998766