>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

Probab=96.29 E-value=0.052 Score=36.06 Aligned_cols=125 Identities=20% Similarity=0.301 Sum_probs=81.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEE-ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE Q ss_conf 85357789999999999998628968999-76888776521246777788999999998629988998567642011112 Q gi|254780820|r 133 GGSIGIAAGEAIVKSCERAIAEKCPLVMF-TASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTAS 211 (284) Q Consensus 133 GGSmG~~~geki~~a~e~A~~~~~PlI~~-~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS 211 (284) T Consensus 7 ~g~I~~~~~~~l~r~l~~A~~~~a~avvl~idTpGG~v~-------~~~~I~~---~i~~s~vpvi~~V-~p-~G~~A~S 74 (187) T cd07020 7 NGAITPATADYLERAIDQAEEGGADALIIELDTPGGLLD-------STREIVQ---AILASPVPVVVYV-YP-SGARAAS 74 (187) T ss_pred CCEECHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHH-------HHHHHHH---HHHCCCCCEEEEE-CC-CCCCHHH T ss_conf 146768899999999999986899899999858960789-------9999999---9981899989998-78-9760771 Q ss_pred E----CCCCCEEEEECCCEEECCCHHH---------------HH---------------------HHHCCCCCCCCHHHH Q ss_conf 0----1468525553142110232788---------------78---------------------763677887202159 Q gi|254780820|r 212 Y----AMLGDIHLAEPGAEIGFAGRRV---------------IE---------------------QTVREKLPDGFQRSE 251 (284) Q Consensus 212 ~----a~lgDiiiaep~a~igFaG~rV---------------i~---------------------~t~~~~lp~~fqtae 251 (284) T Consensus 75 AGa~I~~a~~~~~MaPgt~iGaA~PV~~~~~~~~~~~~~~K~~n~~~a~~rs~Ae~rGRn~~~Ae~~V~e---~~~lta~ 151 (187) T cd07020 75 AGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRE---SLSLTAE 151 (187) T ss_pred HHHHHHHHCCHHHCCCCCCEECCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---CCCCCHH T ss_conf 8999998360754789875001441206898876057899999999999999999839998999998761---4766899 Q ss_pred HHHHCCCCCEEEC-HHHHHHHH Q ss_conf 9996898353735-89999999 Q gi|254780820|r 252 YLVEHGMIDRIVH-RHDIPEVV 272 (284) Q Consensus 252 ~l~~~G~iD~iv~-r~~l~~~i 272 (284) T Consensus 152 eAl~~gviD~ia~~~~eLL~~l 173 (187) T cd07020 152 EALKLGVIDLIAADLNELLKKL 173 (187) T ss_pred HHHHCCCCEEEECCHHHHHHHC T ss_conf 9997698178849999999876

HHsearch alignment for GI: 254780820 and conserved domain: cd07020