HHsearch alignment for GI: 254780820 and conserved domain: smart00661

>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=92.40  E-value=0.034  Score=37.46  Aligned_cols=32  Identities=28%  Similarity=0.558  Sum_probs=26.0

Q ss_pred             CCCCCCEEEHHHHH-HHCCCCCCCCCCEECCHH
Q ss_conf             66768722178898-633838899896243799
Q gi|254780820|r   29 CPETGAMVYHKDLK-ENQWVISSSDFHMKIPAK   60 (284)
Q Consensus        29 Cp~C~~~i~~~~l~-~n~~VCp~C~~H~rl~ar   60 (284)
T Consensus         3 Cp~C~n~l~p~~~~~~~~~~C~~C~y~~~~~~~   35 (52)
T smart00661        3 CPKCGNMLIPKEGKEKRRFVCRKCGYEEPIEQK   35 (52)
T ss_pred             CCCCCCEEEEEECCCCEEEECCCCCCCCCCCCC
T ss_conf             865288876853699538974899984366886