HHsearch alignment for GI: 254780820 and conserved domain: smart00661
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=92.40 E-value=0.034 Score=37.46 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=26.0
Q ss_pred CCCCCCEEEHHHHH-HHCCCCCCCCCCEECCHH
Q ss_conf 66768722178898-633838899896243799
Q gi|254780820|r 29 CPETGAMVYHKDLK-ENQWVISSSDFHMKIPAK 60 (284)
Q Consensus 29 Cp~C~~~i~~~~l~-~n~~VCp~C~~H~rl~ar 60 (284)
T Consensus 3 Cp~C~n~l~p~~~~~~~~~~C~~C~y~~~~~~~ 35 (52)
T smart00661 3 CPKCGNMLIPKEGKEKRRFVCRKCGYEEPIEQK 35 (52)
T ss_pred CCCCCCEEEEEECCCCEEEECCCCCCCCCCCCC
T ss_conf 865288876853699538974899984366886