HHsearch results for GI: 254780820 and protein with PDBid: 1vrg_A

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4
Probab=100.00  E-value=2.6e-41  Score=325.10  Aligned_cols=212  Identities=23%  Similarity=0.328  Sum_probs=182.2

Q ss_pred             ECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCC
Q ss_conf             43799999984556542013345687020186764203566776664216677169998787041499999833031853
Q gi|254780820|r   56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGS  135 (284)
Q Consensus        56 rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGS  135 (284)
                      ||+|||||++|+|+|||.|++......+...            ...+.....|+||+|+|+|||++|+++++||+|+|||
T Consensus        46 kltaRERi~~LlD~gSF~E~g~l~~~~~~~~------------~~~~~~~~~dgvV~G~G~I~Gr~v~v~a~D~tv~gGS  113 (527)
T 1vrg_A           46 KLTAWERLELLLDPGTFVEIDKFVEHRNTYF------------GLDKVKLPRDGVITGVGEINGRKVAVFSQDFTVMGGS  113 (527)
T ss_dssp             CCCHHHHHHHHSCTTCCEEECTTCCCCCCGG------------GGGGCCCGGGGEEEEEEEETTEEEEEEEECTTTGGGC
T ss_pred             CCCHHHHHHHHCCCCCCEECCCCCCCCCCCC------------CCCCCCCCCCEEEEEEEEECCEEEEEEEECCCEECCC
T ss_conf             9999999999657998747754315477554------------5334558887189999999999999999878770407


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCC
Q ss_conf             57789999999999998628968999768887765212467777889999999986299889985676420111120146
Q gi|254780820|r  136 IGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAML  215 (284)
Q Consensus       136 mG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~l  215 (284)
                      +|.++++|+.++.++|.++++|+|.+.+|||+|||||+.+|+||.++..+...+ ..++|+|+++++||+||.++++++.
T Consensus       114 ~g~~~~~k~~~~~~~A~~~~lPlV~l~~sgGar~~eg~~~l~~~g~i~~~~~~~-sg~vP~Isvv~Gp~~GG~A~~~~~~  192 (527)
T 1vrg_A          114 LGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQEGVDALAGYGEIFLRNTLA-SGVVPQITVIAGPCAGGAVYSPALT  192 (527)
T ss_dssp             BCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGGGTHHHHHHHHHHHHHHHHH-TTTSCEEEEEEEEEBGGGGHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHC
T ss_conf             788999999999999996599889985578877655542124406999999996-6999889994178760787778868


Q ss_pred             CCEEEEECCCEEECCCHHHHHHHHCCCCCCCC-HHHHHHH-HCCCCCEEEC-HHHHHHHHHHHHHHHH
Q ss_conf             85255531421102327887876367788720-2159999-6898353735-8999999999999972
Q gi|254780820|r  216 GDIHLAEPGAEIGFAGRRVIEQTVREKLPDGF-QRSEYLV-EHGMIDRIVH-RHDIPEVVSSLCKILT  280 (284)
Q Consensus       216 gDiiiaep~a~igFaG~rVi~~t~~~~lp~~f-qtae~l~-~~G~iD~iv~-r~~l~~~i~~ll~il~  280 (284)
                      +++|+++++|+|+|+||+||++.++|+++++. ..++.+. ..|.+|.+++ ..+.-+.+-++|+.|-
T Consensus       193 d~vim~~~~a~i~~aGP~vV~~~tGe~v~~eelGG~~~h~~~sG~~~~~~~~e~~a~~~~r~~ls~lp  260 (527)
T 1vrg_A          193 DFIVMVDQTARMFITGPNVIKAVTGEEISQEDLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLSYLP  260 (527)
T ss_dssp             SEEEEETTTCBCBSSCHHHHHHHHCCCCCHHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHTTSC
T ss_pred             CEEEEECCCCEEEECCHHHHHHHCCCCCCHHHCCCCEEEEECCCCCCEEECCHHHHHHHHHHHHHHCC
T ss_conf             85899617745871477889886076258565576047642255530542114779999999998578