HHsearch results for GI: 254780820 and protein with PDBid: 2gtr_A
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A
Probab=97.88 E-value=0.0013 Score=46.23 Aligned_cols=146 Identities=17% Similarity=0.145 Sum_probs=95.4
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHH-H------------HHHHH-HHHHHHHHHHCCCCEE
Q ss_conf 18535778999999999999862896899976888776521246-7------------77788-9999999986299889
Q gi|254780820|r 132 IGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILS-L------------MQLPR-TTIAINMLKDAGLPYI 197 (284)
Q Consensus 132 ~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~s-L------------~qMak-t~~a~~~l~~~~lP~I 197 (284)
-.-++....-+-+..+++.+.....-+|++..+|..=--.+-+. + ..+.+ ....+..+.....|+|
T Consensus 26 ~~Nal~~~~~~el~~al~~~~~d~~~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 105 (261)
T 2gtr_A 26 ENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPII 105 (261)
T ss_dssp STTEECHHHHHHHHHHHHHHHHSSCSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 03588999999999999998629976999978998646688873542211233202478999999887678750999899
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHH-----------HHHHH-----------HCCCCCCCCHHHHHHHH
Q ss_conf 985676420111120146852555314211023278-----------87876-----------36778872021599996
Q gi|254780820|r 198 VVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRR-----------VIEQT-----------VREKLPDGFQRSEYLVE 255 (284)
Q Consensus 198 ~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~r-----------Vi~~t-----------~~~~lp~~fqtae~l~~ 255 (284)
+.+.++|.||= +.++...|+.|+.+++.+++.-.+ ...+. +++.+ +|+..++
T Consensus 106 aav~G~a~GgG-~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~G~~~a~~l~l~g~~~-----~a~eA~~ 179 (261)
T 2gtr_A 106 VAVNGPAIGLG-ASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKL-----TAQEACG 179 (261)
T ss_dssp EEECSCEETHH-HHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCE-----EHHHHHH
T ss_pred EEECCEEEECC-CHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-----CHHHHHH
T ss_conf 99878146621-17530001412335456553210147778843477899981952224542356767-----7889976
Q ss_pred CCCCCEEECHHHHHHHHHHHHHHHHCCC
Q ss_conf 8983537358999999999999972378
Q gi|254780820|r 256 HGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284)
Q Consensus 256 ~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284)
.|+||.||+..++.+....+..-|.+++
T Consensus 180 ~Glv~~vv~~~~l~~~a~~~a~~la~~~ 207 (261)
T 2gtr_A 180 KGLVSQVFWPGTFTQEVMVRIKELASCN 207 (261)
T ss_dssp TTSCSEEECGGGHHHHHHHHHHHHHTSC
T ss_pred CCCEEEEECHHHHHHHHHHHHHHHHCCC
T ss_conf 7973687081889999999999998089