HHsearch results for GI: 254780820 and protein with PDBid: 3gf3_A
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Probab=99.65 E-value=4.5e-14 Score=123.67 Aligned_cols=200 Identities=15% Similarity=0.227 Sum_probs=150.9
Q ss_pred CCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEE---
Q ss_conf 98962437999999845565420133456870201867642035667766642166771699987870414999998---
Q gi|254780820|r 51 SDFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVH--- 127 (284)
Q Consensus 51 C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~--- 127 (284)
.+..-+...|+-|+.++|.++|.|+... | ..++|||.++|+|++|.+.+.
T Consensus 318 ~~~~~~yD~r~vi~~i~D~~sf~E~~~~--------------~-------------g~~vvtG~aRl~G~pVGviAn~~~ 370 (588)
T 3gf3_A 318 MNQKRPYDIYEVIARLFDNSEFSEYKKG--------------Y-------------GPEMVTGLAKVNGLLVGVIANVQG 370 (588)
T ss_dssp SSTTCCCCHHHHHHHHSGGGBCEESSTT--------------S-------------STTEEEEEEEETTEEEEEEEECCS
T ss_pred CCCCCCCCHHHHHHHCCCCCCEEEECCC--------------C-------------CCCCEEEEEEECCCEEEEEECCCC
T ss_conf 0467777499999864555532320355--------------5-------------776326677648947999951455
Q ss_pred ----------ECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf ----------330318535778999999999999862896899976888776-----52124677778899999999862
Q gi|254780820|r 128 ----------EFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARM-----QEGILSLMQLPRTTIAINMLKDA 192 (284)
Q Consensus 128 ----------df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRM-----qEG~~sL~qMakt~~a~~~l~~~ 192 (284)
+..++||.+.....+|.+|.++.+-..++|||.|.+.-|.-. +.|++ -..+|...|+ .++
T Consensus 371 ~~~~~p~~~~~~~~~~G~l~~~aa~Kaarfi~lcd~f~lPlv~lvD~pGf~~G~~~E~~Gii--~~gA~~~~A~---a~a 445 (588)
T 3gf3_A 371 LLMNYPEYKQNSVGIGGKLYRQGLIKMNEFVTLCARDRIPLIWLQDTTGIDVGDEAEKAELL--GLGQSLIYSI---ENS 445 (588)
T ss_dssp EEETCCTTSSSCEEETTEECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTHH--HHHHHHHHHH---HHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHH--HHHHHHHHHH---HCC
T ss_conf 34456543356200378667778999999998515479876999357887787688871499--9999999998---717
Q ss_pred CCCEEEEECCCCCCEEEEEECCC-----CCEEEEE--CCCEEECCCHHHHHHHH-C------CCCCCCC-----------
Q ss_conf 99889985676420111120146-----8525553--14211023278878763-6------7788720-----------
Q gi|254780820|r 193 GLPYIVVLTNPTTGGVTASYAML-----GDIHLAE--PGAEIGFAGRRVIEQTV-R------EKLPDGF----------- 247 (284)
Q Consensus 193 ~lP~I~vl~~pt~GGv~AS~a~l-----gDiiiae--p~a~igFaG~rVi~~t~-~------~~lp~~f----------- 247 (284)
.+|.|+|++...+||. .++|. .|++++- |.|.||.-||.-.-+++ + ++-.++.
T Consensus 446 ~vP~isvi~rka~Ggg--~~am~~~~~~~d~~~a~~~p~a~~~vm~~ega~~i~~~~e~~~a~~~~~~~~~~~~~~~~~~ 523 (588)
T 3gf3_A 446 KLPSLEITIRKASAAA--HYVLGGPQGNNTNVFSIGTGACEYYVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMI 523 (588)
T ss_dssp CSCEEEEESSEEETTH--HHHTTCTTCTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHH--HHHHCCCCCCCCEEEECCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9997999978753145--66524755688646876788762842589999999999999753167714458999999999
Q ss_pred ------HHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCC
Q ss_conf ------2159999689835373589999999999999723789
Q gi|254780820|r 248 ------QRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSVQ 284 (284)
Q Consensus 248 ------qtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~~ 284 (284)
.++.+.-++|.||.||++.|.|..|...|+++..|.|
T Consensus 524 ~~~~~~~~p~~aa~~~~vD~vIdP~~TR~~l~~~l~~~~~~~~ 566 (588)
T 3gf3_A 524 QMYTDKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTEAAYQNPQ 566 (588)
T ss_dssp HHHHHTTSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999846999998657878127839999999999999985876