RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780820|ref|YP_003065233.1| acetyl-CoA carboxylase subunit
beta [Candidatus Liberibacter asiaticus str. psy62]
(284 letters)
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;
zinc ribbon, crotonase superfamily, spiral domain,
ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Length = 304
Score = 264 bits (675), Expect = 2e-71
Identities = 130/280 (46%), Positives = 183/280 (65%), Gaps = 2/280 (0%)
Query: 1 MNWITNFVRPRINSVFGRRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAK 60
M+WI ++ I + +IPE +W KC G ++Y +L+ N V D HM++ A+
Sbjct: 1 MSWIER-IKSNITPTR-KASIPEGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTAR 58
Query: 61 ERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDF 120
RL L D L +D LKFRD+KKY DRL + +TG D++V G +
Sbjct: 59 NRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGTLYGM 118
Query: 121 KLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLP 180
+VA EF+F+GGS+G G V++ E+A+ + CPL+ F+ASGGARMQE ++SLMQ+
Sbjct: 119 PVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMSLMQMA 178
Query: 181 RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQTVR 240
+T+ A+ +++ GLPYI VLT+PT GGV+AS+AMLGD+++AEP A IGFAG RVIEQTVR
Sbjct: 179 KTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVR 238
Query: 241 EKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILT 280
EKLP GFQRSE+L+E G ID IV R ++ ++S+ L
Sbjct: 239 EKLPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLM 278
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 285
Score = 245 bits (625), Expect = 1e-65
Identities = 109/283 (38%), Positives = 177/283 (62%), Gaps = 5/283 (1%)
Query: 1 MNWITNFVRPRINSVFG--RRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIP 58
++ + + +V +P + KCP+ ++Y K+L EN V + D H+ +
Sbjct: 3 KDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALT 62
Query: 59 AKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVR 118
A +R++ + D + D+ +PL F Y++++++++ KTGL +++V+ +
Sbjct: 63 AYKRIEAISDEGSFTEFDKGMTSANPLDF---PSYLEKIEKDQQKTGLKEAVVTGTAQLD 119
Query: 119 DFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQ 178
K V + F GS+G GE I + + + P ++F+ASGGARMQEGI+SLMQ
Sbjct: 120 GMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQ 179
Query: 179 LPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQT 238
+ +T++++ DAGL YI LT+PTTGGV+AS+A +GDI+L+EP A IGFAGRRVIEQT
Sbjct: 180 MGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQT 239
Query: 239 VREKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTK 281
+ EKLPD FQ +E+L+EHG +D++VHR+D+ + +S + KI +
Sbjct: 240 INEKLPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQE 282
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
duplication, multienzyme complex, transcarboxylase; HET:
MCA; 1.90A {Propionibacterium freudenreichii} SCOP:
c.14.1.4 c.14.1.4 PDB: 1on9_A*
Length = 523
Score = 130 bits (328), Expect = 3e-31
Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 16/213 (7%)
Query: 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVG 115
K A+ERL L D + + +K+ L D +V+ G
Sbjct: 43 KQTARERLNNLLDPHSFDEVGAF------------RKHRTTLFGMDKAVVPADGVVTGRG 90
Query: 116 NVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILS 175
+ + A +F+ +GGS G +V++ E+A+ P + F SGGAR+QEGI S
Sbjct: 91 TILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDS 150
Query: 176 LMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVI 235
L + A N+ +P I ++ P GG + S L D + A + G +VI
Sbjct: 151 LSGYGKMFFA-NVKLSGVVPQIAIIAGPCAGGASYS-PALTDFIIMTKKAHMFITGPQVI 208
Query: 236 EQTVREKL--PDGFQRSEYLVEHGMIDRIVHRH 266
+ E + + ++ G I +
Sbjct: 209 KSVTGEDVTADELGGAEAHMAISGNIHFVAEDD 241
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A*
3ibb_A 1xny_A* 1xnv_A* 1xo6_A
Length = 530
Score = 130 bits (328), Expect = 3e-31
Identities = 52/216 (24%), Positives = 83/216 (38%), Gaps = 15/216 (6%)
Query: 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVG 115
K+ A+ER+ L D + LD+ F ++ L D +V+ G
Sbjct: 45 KLTARERIDLLLDEGSFVELDE---------FARHRSTNFGLDA---NRPYGDGVVTGYG 92
Query: 116 NVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILS 175
V + +F+ GG++G G+ IVK + A+ CP+V SGGAR+QEG+ S
Sbjct: 93 TVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVAS 152
Query: 176 LMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVI 235
L +P I ++ P GG S A+ + + + + G VI
Sbjct: 153 LGAYGEIFRRNTHA-SGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVI 211
Query: 236 EQTVREKLPDGFQRSEYLVEHGMIDRIVHRHDIPEV 271
+ E GF+ H + H E
Sbjct: 212 KTVTGE--DVGFEELGGARTHNSTSGVAHHMAGDEK 245
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP:
c.14.1.4 c.14.1.4
Length = 527
Score = 121 bits (305), Expect = 1e-28
Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 13/224 (5%)
Query: 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVG 115
K+ A ERL+ L D + +D+ ++ + D +++ VG
Sbjct: 46 KLTAWERLELLLDPGTFVEIDK------------FVEHRNTYFGLDKVKLPRDGVITGVG 93
Query: 116 NVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILS 175
+ K+ +F+ +GGS+G + IVK + A+ P++ SGGAR+QEG+ +
Sbjct: 94 EINGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQEGVDA 153
Query: 176 LMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVI 235
L + N L +P I V+ P GG S A+ I + + A + G VI
Sbjct: 154 LAGYGEIFLR-NTLASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITGPNVI 212
Query: 236 EQTVREKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKIL 279
+ E++ + + + + +S + +L
Sbjct: 213 KAVTGEEISQEDLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLL 256
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis,
accase, ligase, transferase; 2.2A {Mycobacterium
tuberculosis} PDB: 2a7s_A
Length = 548
Score = 116 bits (292), Expect = 4e-27
Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVG 115
K+ A+ER+ L D + LD L + + K L D +V+ G
Sbjct: 56 KLTARERIYALLDEDSFVELD-------ALAKHRSTNF-----NLGEKRPLGDGVVTGYG 103
Query: 116 NVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILS 175
+ + + + GGS+G GE IVK E AI PL+ GAR+QEG++S
Sbjct: 104 TIDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQEGVVS 163
Query: 176 LMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVI 235
L R N+L +P I ++ GG S A+ + + + +++ G VI
Sbjct: 164 LGLYSRIFRN-NILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGPDVI 222
Query: 236 EQTVREKL--PDGFQRSEYLVEHGMIDRIVH 264
+ E++ + ++ + G
Sbjct: 223 KTVTGEEVTMEELGGAHTHMAKSGTAHYAAS 253
Score = 30.1 bits (67), Expect = 0.52
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 7/128 (5%)
Query: 109 SIVSAVGNVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGAR 168
+IV G + + V ++ + G + I A E + P+VM G
Sbjct: 336 NIVVGFGRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFL 395
Query: 169 MQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLG-----DIHLAEP 223
+ R + +A +P I V+T GG A M D++LA P
Sbjct: 396 PGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGG--AYCVMGSKDMGCDVNLAWP 453
Query: 224 GAEIGFAG 231
A+I G
Sbjct: 454 TAQIAVMG 461
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Roseobacter denitrificans och 114}
Length = 531
Score = 117 bits (293), Expect = 4e-27
Identities = 43/218 (19%), Positives = 84/218 (38%), Gaps = 13/218 (5%)
Query: 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVG 115
K+ A+ER+ L D + D F ++ +++ + D +V+ G
Sbjct: 53 KLTARERVDLLLDEGSFEEFDM---------FVTHRCTDFNMQD---QKPAGDGVVTGWG 100
Query: 116 NVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILS 175
+ + +F+ +GGS+ + I K + A+ P++ SGGAR+QEG+ S
Sbjct: 101 TINGRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNGAPVIGINDSGGARIQEGVDS 160
Query: 176 LMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVI 235
L N++ +P I ++ P GG S AM I + + + + G V+
Sbjct: 161 LAGYGE-VFQRNIMASGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPDVV 219
Query: 236 EQTVREKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVS 273
+ E++ + E ++
Sbjct: 220 KTVTNEQVSAEELGGATTHTRKSSVADAAFENDVEALA 257
>1xny_A Pccase, propionyl-COA carboxylase complex B subunit, PCC;
polyketide, polyketide synthase, acyl-COA carboxylase,
carboxyltransferase; HET: 191 BTN; 2.20A {Streptomyces
coelicolor} SCOP: c.14.1.4 c.14.1.4 PDB: 1xnv_A* 1xo6_A
1xnw_A
Length = 530
Score = 106 bits (265), Expect = 6e-24
Identities = 52/215 (24%), Positives = 83/215 (38%), Gaps = 15/215 (6%)
Query: 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVG 115
K+ A+ER+ L D + LD+ F ++ L D +V+ G
Sbjct: 45 KLTARERIDLLLDEGSFVELDE---------FARHRSTNFGLDA---NRPYGDGVVTGYG 92
Query: 116 NVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILS 175
V + +F+ GG++G G+ IVK + A+ CP+V SGGAR+QEG+ S
Sbjct: 93 TVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVAS 152
Query: 176 LMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVI 235
L +P I ++ P GG S A+ + + + + G VI
Sbjct: 153 LGAYGEIFRRNTHAS-GVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVI 211
Query: 236 EQTVREKLPDGFQRSEYLVEHGMIDRIVHRHDIPE 270
+ E GF+ H + H E
Sbjct: 212 KTVTGE--DVGFEELGGARTHNSTSGVAHHMAGDE 244
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase;
2.20A {Sulfolobus tokodaii str}
Length = 522
Score = 103 bits (257), Expect = 5e-23
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 16/211 (7%)
Query: 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVG 115
K+ A+ERL LFD+ K+ + F + L + + D +V+ G
Sbjct: 39 KLTARERLALLFDDGKFNEIM---------TFATTRATEFGLDK---QRFYGDGVVTGWG 86
Query: 116 NVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILS 175
V + A +F+ +GGS+G IV++ E A+ P+V SGGAR+QEG LS
Sbjct: 87 KVDGRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKVGAPVVGINDSGGARIQEGALS 146
Query: 176 LMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVI 235
++ +N++ +P I ++ P GG S A+ I + + A F I
Sbjct: 147 -LEGYGAVFKMNVMASGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVTGPEI 205
Query: 236 EQTVREKL---PDGFQRSEYLVEHGMIDRIV 263
+ V + D + + G++ +V
Sbjct: 206 TKVVLGEEVSFQDLGGAVVHATKSGVVHFMV 236
Score = 30.1 bits (67), Expect = 0.66
Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 23/183 (12%)
Query: 103 KTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFT 162
+I+ + + V + GGSI I A + + A PL+
Sbjct: 308 HKHWAQNIIVGFARIAGNVVGIVANNPEEFGGSIDIDAADKAARFIRFCDAFNIPLISLV 367
Query: 163 ASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGG---VTASYAMLGDIH 219
+ G + + +A +P I V+ + GG + ++ D+
Sbjct: 368 DTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLV 427
Query: 220 LAEPGAEIGFAG---------RRVIE----------QTVREKLPDGFQRSEYLVEHGMID 260
A P AEI G R+ I+ Q + E F + E G++D
Sbjct: 428 YAWPTAEIAVTGPEGAVRILYRKEIQQASNPDDVLKQRIAEYR-KLFANPYWAAEKGLVD 486
Query: 261 RIV 263
++
Sbjct: 487 DVI 489
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump,
carboxyltransferase, lyase; 2.20A {Acidaminococcus
fermentans} SCOP: c.14.1.4 c.14.1.4
Length = 587
Score = 94.4 bits (234), Expect = 2e-20
Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 23/205 (11%)
Query: 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVG 115
++ A +R++ L + P +R ++ L + +IV +G
Sbjct: 60 ELTALQRIEKLVE---------------PGSWRP----LNTLFNPQGNKNGSVAIVKGLG 100
Query: 116 NVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILS 175
V V V + + G+ E ++++ + A PLV G + E
Sbjct: 101 RVNGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKV 160
Query: 176 LMQLP---RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGR 232
L G+P IV + G +++ + +A A + G
Sbjct: 161 YPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAG-GGYHSISPTVIIAHEKANMAVGGA 219
Query: 233 RVIEQTVREKLPDGFQRSEYLVEHG 257
++ + D +E
Sbjct: 220 GIMGGMNPKGHVDLEYANEIADMVD 244
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport,
biotin, glutamate fermentation, lyase; HET: COO; 1.75A
{Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Length = 588
Score = 92.5 bits (229), Expect = 9e-20
Identities = 28/210 (13%), Positives = 63/210 (30%), Gaps = 23/210 (10%)
Query: 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVG 115
++ A +R+ L D P + ++ L + +IV+ +G
Sbjct: 61 QLSAMQRINALID---------------PGTWCP----LNSLFNPENNKFGTTNIVNGLG 101
Query: 116 NVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILS 175
V + V + + G+ E +++ + A PL+ G
Sbjct: 102 RVDGKWVYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKV 161
Query: 176 LMQLP---RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGR 232
+ L G+P IV + G +++ I +A A + G
Sbjct: 162 YPNRRGGGTPFFRNSELNQLGIPVIVGIYGTNPAG-GGYHSISPTILIAHQDANMAVGGA 220
Query: 233 RVIEQTVREKLPDGFQRSEYLVEHGMIDRI 262
++ + D + + ++
Sbjct: 221 GILSGMNPKGYIDDEAAEQIIAAQIENSKL 250
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, CT,
tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid
biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae}
PDB: 1w2x_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A
1uyv_A
Length = 758
Score = 62.1 bits (150), Expect = 2e-10
Identities = 34/171 (19%), Positives = 48/171 (28%), Gaps = 28/171 (16%)
Query: 123 VAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGAR--MQEGILSLMQ-- 178
V V ++ +F GS G E K E A P + A+ GAR M E I+ L Q
Sbjct: 108 VVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVA 167
Query: 179 -------------LPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPG- 224
L T+ + LK V+ G ++ I +E G
Sbjct: 168 WNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTVING--EERFVIKTIIGSEDGL 225
Query: 225 --------AEIGFAGRRVIEQTVREKLPDGFQRSEYLVEHGMIDRIVHRHD 267
I A R L + R +
Sbjct: 226 GVECLRGSGLIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEG 276
>3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid
metabolism, alternative splicing, ATP-binding, biotin,
fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens}
Length = 760
Score = 55.5 bits (133), Expect = 1e-08
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 12/126 (9%)
Query: 123 VAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGAR--MQEGILSLMQLP 180
+ + ++ +F GS G +++ E A AE P + A+ GAR M E I + +
Sbjct: 98 IVIGNDITFRIGSFGPGEDLLYLRASEMARAEGIPKIYVAANSGARIGMAEEIKHMFHVA 157
Query: 181 RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQTVR 240
G Y+ + T + L +H E G R +I +
Sbjct: 158 WVDPED---PHKGFKYLYL-----TPQDYTRISSLNSVHCKHI--EEGGESRYMITDIIG 207
Query: 241 EKLPDG 246
+ G
Sbjct: 208 KDDGLG 213
Score = 44.0 bits (103), Expect = 4e-05
Identities = 15/121 (12%), Positives = 35/121 (28%), Gaps = 5/121 (4%)
Query: 148 CERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGG 207
C+ M T G G+ +L + L + I ++T G
Sbjct: 189 CKHIEEGGESRYMITDIIGKDDGLGVENLRGSGMIA-GESSLAYEEIVTISLVTCRAIGI 247
Query: 208 VTASYAMLGDIHLAEPGAEIGFAGRRVIEQTVREKL---PDGFQRSEYLVEHGMIDRIVH 264
+ G + + I G + + + ++ + + + +G+ V
Sbjct: 248 GAYLVRL-GQRVIQVENSHIILTGASALNKVLGREVYTSNNQLGGVQIMHYNGVSHITVP 306
Query: 265 R 265
Sbjct: 307 D 307
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 51.9 bits (124), Expect = 2e-07
Identities = 60/378 (15%), Positives = 105/378 (27%), Gaps = 171/378 (45%)
Query: 7 FVRPRINSVFGRRAIPENLWVKCPETGAMVYHKDLKENQWV-----ISSSDFHMKIPAKE 61
V I L ++ V+ + L +W+ D+ + IP
Sbjct: 183 LVGDLIKFS-AETL--SEL-IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP--- 235
Query: 62 RLKF----LFDNAKYCLLDQPQVCQ----DPLKFRDNKKYIDRLKENRSKTGLIDS--IV 111
+ + A Y + + P + R LK TG S +V
Sbjct: 236 -ISCPLIGVIQLAHYVV-----TAKLLGFTPGELRS------YLK---GATG--HSQGLV 278
Query: 112 SAVGNVRDFKLVAVVHEF-SFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQ 170
+AV +A + SF ++ K+ V+F G R
Sbjct: 279 TAVA-------IAETDSWESFF---------VSVRKAIT---------VLFFI--GVRCY 311
Query: 171 EGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLG--DI---------- 218
E P T++ ++L+D+ L N S ML ++
Sbjct: 312 EAY------PNTSLPPSILEDS-------LEN---NEGVPSP-MLSISNLTQEQVQDYVN 354
Query: 219 ----HLAEPGAEIGFA---GRR--VI----------EQTVRE-KLPDG-------F-QR- 249
HL G ++ + G + V+ T+R+ K P G F +R
Sbjct: 355 KTNSHLPA-GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 250 ---------------SEYLVEHGMIDRI---VHRHD---------IP------------- 269
S LV D I + +++ IP
Sbjct: 414 LKFSNRFLPVASPFHSHLLV--PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 270 --EVVSSLCK-ILTKSVQ 284
+ + I+ V+
Sbjct: 472 SGSISERIVDCIIRLPVK 489
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.7 bits (71), Expect = 0.18
Identities = 47/187 (25%), Positives = 68/187 (36%), Gaps = 58/187 (31%)
Query: 1 MNWITNFVRPRINSVFGRRAIPENLWV----KCP----------ETGAMV---------- 36
M WI F+ ++ GR P WV K P ET +
Sbjct: 854 MAWIMGFISYHNGNLKGR---PYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEPE 910
Query: 37 ----YHKDLKEN-QWVISSSD---FHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKF- 87
Y+ + KE Q VI D F E+ K + K + + P+ + +K
Sbjct: 911 LFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGD-KVDIFEIPETGEYSVKLL 969
Query: 88 RDNKKYI------DRLKENR------SKT-GLIDSIVSAVGNVRDFKLVAVVHEFSFIGG 134
+ YI DRL + +KT G+ D I+S V + F LV+VV F
Sbjct: 970 KGATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAF----- 1024
Query: 135 SIGIAAG 141
IA+G
Sbjct: 1025 ---IASG 1028
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.7 bits (68), Expect = 0.37
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 230 AGRRVIEQTVREK----LPDGFQRSEYLVEHGMI-DRIVHR 265
A +V+EQ REK L + QR VE I +RI +
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM
barrel, binuclear zinc, protein structure initiative II
(PSI II); 1.80A {Rhodobacter sphaeroides 2}
Length = 364
Score = 28.5 bits (63), Expect = 1.8
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 220 LAEPGAEIGFA--GRRVIEQTVREKLPDGFQRSE---YLVEHGMIDRIVHRHDIP 269
LA+ GA + F G + P + + L +HG +DRI+ HD+
Sbjct: 252 LAQRGAFLEFDMIGMDFFYADQGVQCPSDDEVARAILGLADHGYLDRILLSHDVF 306
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.4 bits (58), Expect = 6.7
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 9 RPRINSVFGRRAIPENLWVKCPETG 33
R I+ GRR N+ + CPE
Sbjct: 4 RESIDKRAGRRGPNLNIVLTCPECK 28
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 26.5 bits (58), Expect = 7.2
Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 16/117 (13%)
Query: 181 RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFA---------- 230
R L P +V + G T A+ D +A A+IG+
Sbjct: 145 RFVRGFASLMHCDKPTVVKIHGYCVAGGT-DIALHADQVIAAADAKIGYPPMRVWGVPAA 203
Query: 231 ---GRRVIEQTVREKLPDGFQ-RSEYLVEHGMIDRIVHRHDIPEVVSSLC-KILTKS 282
R+ +Q + L G E G+ D+ L +I
Sbjct: 204 GLWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMP 260
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta
barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB:
2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A*
3fdk_A* 3htw_A*
Length = 339
Score = 26.2 bits (57), Expect = 7.9
Identities = 35/207 (16%), Positives = 53/207 (25%), Gaps = 35/207 (16%)
Query: 88 RDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKS 147
+ L+E TGL I+ A G + +F G E +
Sbjct: 86 NGCGRNPAFLREVSEATGL--QILCATGFYYEGGGATTYFKFRASLGDAESEIYEMMRTE 143
Query: 148 CERAIA--EKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTT 205
IA V+ AS + + A + ++ G+P I
Sbjct: 144 VTEGIAGTGIRAGVIKLASSRDAITPYEQLFFR-----AAARVQRETGVPIITHTQEGQQ 198
Query: 206 GGVTASYAM--------LGDIH------------LAEPGAEIGFAGRRVIEQTVREKLPD 245
G A + H G I F I P
Sbjct: 199 GPQQAELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIAFDR---IGLQGMVGTPT 255
Query: 246 GFQRSE---YLVEHGMIDRIVHRHDIP 269
+R L+ G DR++ HD
Sbjct: 256 DAERLSVLTTLLGEGYADRLLLSHDSI 282
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 26.1 bits (57), Expect = 9.9
Identities = 13/107 (12%), Positives = 34/107 (31%), Gaps = 3/107 (2%)
Query: 1 MNWITNFVRPRINSVFGRRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAK 60
I + S+ + I + + + + +V + S+ ++
Sbjct: 114 ERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRV--- 170
Query: 61 ERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLI 107
+ L + +LD+P D + +D L ++ +I
Sbjct: 171 MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI 217
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.138 0.411
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,484,574
Number of extensions: 115690
Number of successful extensions: 394
Number of sequences better than 10.0: 1
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 26
Length of query: 284
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 193
Effective length of database: 3,487,026
Effective search space: 672996018
Effective search space used: 672996018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)