BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780820|ref|YP_003065233.1| acetyl-CoA carboxylase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (284 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780820|ref|YP_003065233.1| acetyl-CoA carboxylase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 284 Score = 591 bits (1523), Expect = e-171, Method: Compositional matrix adjust. Identities = 284/284 (100%), Positives = 284/284 (100%) Query: 1 MNWITNFVRPRINSVFGRRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAK 60 MNWITNFVRPRINSVFGRRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAK Sbjct: 1 MNWITNFVRPRINSVFGRRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAK 60 Query: 61 ERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDF 120 ERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDF Sbjct: 61 ERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDF 120 Query: 121 KLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLP 180 KLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLP Sbjct: 121 KLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLP 180 Query: 181 RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQTVR 240 RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQTVR Sbjct: 181 RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQTVR 240 Query: 241 EKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSVQ 284 EKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSVQ Sbjct: 241 EKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSVQ 284 >gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 963 Score = 27.3 bits (59), Expect = 0.31, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 22/121 (18%) Query: 87 FRDN-------KKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGSIGIA 139 F+DN + ++DRL T ++D + + N+R +V + ++ I +GIA Sbjct: 534 FQDNLTGIPNRQSFLDRL------TTILD-LSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 Query: 140 AGEAIVKSCERAIAE--KCPLVMFTASGGARMQEGILSLMQ---LPRTTIAINMLKDAGL 194 G+ ++ S R I E K P ++ SG + GI+ + + L AI M K + Sbjct: 587 VGDDVLVSLTRRIGELLKFPDILARLSGN---RFGIILISENNSLKIADFAIAMRKSIAM 643 Query: 195 P 195 P Sbjct: 644 P 644 >gi|254780900|ref|YP_003065313.1| homoserine dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 23.5 bits (49), Expect = 4.6, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 13/21 (61%) Query: 198 VVLTNPTTGGVTASYAMLGDI 218 + +T P GG + A+LGDI Sbjct: 296 LTMTGPGAGGSATASAVLGDI 316 >gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus str. psy62] Length = 523 Score = 23.5 bits (49), Expect = 4.7, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 16/19 (84%) Query: 107 IDSIVSAVGNVRDFKLVAV 125 +DS+V+A+G V+ F ++A+ Sbjct: 145 LDSVVTAIGMVQHFSVMAI 163 >gi|254780224|ref|YP_003064637.1| hypothetical protein CLIBASIA_00545 [Candidatus Liberibacter asiaticus str. psy62] Length = 382 Score = 23.1 bits (48), Expect = 6.1, Method: Compositional matrix adjust. Identities = 9/18 (50%), Positives = 14/18 (77%) Query: 99 ENRSKTGLIDSIVSAVGN 116 EN +TG +D+IV+ +GN Sbjct: 129 ENLIETGCVDNIVALLGN 146 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.138 0.411 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 179,875 Number of Sequences: 1233 Number of extensions: 7179 Number of successful extensions: 15 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 6 length of query: 284 length of database: 328,796 effective HSP length: 73 effective length of query: 211 effective length of database: 238,787 effective search space: 50384057 effective search space used: 50384057 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)