BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780820|ref|YP_003065233.1| acetyl-CoA carboxylase subunit
beta [Candidatus Liberibacter asiaticus str. psy62]
         (284 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780820|ref|YP_003065233.1| acetyl-CoA carboxylase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 284

 Score =  591 bits (1523), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 284/284 (100%), Positives = 284/284 (100%)

Query: 1   MNWITNFVRPRINSVFGRRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAK 60
           MNWITNFVRPRINSVFGRRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAK
Sbjct: 1   MNWITNFVRPRINSVFGRRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAK 60

Query: 61  ERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDF 120
           ERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDF
Sbjct: 61  ERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDF 120

Query: 121 KLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLP 180
           KLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLP
Sbjct: 121 KLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLP 180

Query: 181 RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQTVR 240
           RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQTVR
Sbjct: 181 RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQTVR 240

Query: 241 EKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSVQ 284
           EKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSVQ
Sbjct: 241 EKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSVQ 284


>gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 963

 Score = 27.3 bits (59), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 22/121 (18%)

Query: 87  FRDN-------KKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGSIGIA 139
           F+DN       + ++DRL      T ++D + +   N+R   +V  + ++  I   +GIA
Sbjct: 534 FQDNLTGIPNRQSFLDRL------TTILD-LSATDDNLRPTVMVIDIDKYKKINDVLGIA 586

Query: 140 AGEAIVKSCERAIAE--KCPLVMFTASGGARMQEGILSLMQ---LPRTTIAINMLKDAGL 194
            G+ ++ S  R I E  K P ++   SG    + GI+ + +   L     AI M K   +
Sbjct: 587 VGDDVLVSLTRRIGELLKFPDILARLSGN---RFGIILISENNSLKIADFAIAMRKSIAM 643

Query: 195 P 195
           P
Sbjct: 644 P 644


>gi|254780900|ref|YP_003065313.1| homoserine dehydrogenase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 438

 Score = 23.5 bits (49), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 198 VVLTNPTTGGVTASYAMLGDI 218
           + +T P  GG   + A+LGDI
Sbjct: 296 LTMTGPGAGGSATASAVLGDI 316


>gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 523

 Score = 23.5 bits (49), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 8/19 (42%), Positives = 16/19 (84%)

Query: 107 IDSIVSAVGNVRDFKLVAV 125
           +DS+V+A+G V+ F ++A+
Sbjct: 145 LDSVVTAIGMVQHFSVMAI 163


>gi|254780224|ref|YP_003064637.1| hypothetical protein CLIBASIA_00545 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 382

 Score = 23.1 bits (48), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 99  ENRSKTGLIDSIVSAVGN 116
           EN  +TG +D+IV+ +GN
Sbjct: 129 ENLIETGCVDNIVALLGN 146


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.138    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,875
Number of Sequences: 1233
Number of extensions: 7179
Number of successful extensions: 15
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 284
length of database: 328,796
effective HSP length: 73
effective length of query: 211
effective length of database: 238,787
effective search space: 50384057
effective search space used: 50384057
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)