HHsearch alignment for GI: 254780821 and conserved domain: COG0770
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=2.2e-39 Score=262.44 Aligned_cols=331 Identities=23% Similarity=0.278 Sum_probs=211.4
Q ss_pred CCCHHHHHHHHHHC-CCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECC
Q ss_conf 78889999999872-99588359839994589847999999999999789351413784110120089888477871558
Q gi|254780821|r 3 ADSLLKMGYLLEDL-GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVE 81 (429)
Q Consensus 3 ~~~l~r~~~ll~~l-g~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~ 81 (429)
T Consensus 84 ~d~~~al~~la~~~~~~~--~~-kvIaITGS~GKTTTKe~la~iL~~~~~-v--~~t~gn~--------N-----n~-i- 142 (451)
T COG0770 84 LDTLEALGKLAKAYRQKF--NA-KVIAITGSNGKTTTKEMLAAILSTKGK-V--HATPGNF--------N-----NE-I- 142 (451)
T ss_pred HHHHHHHHHHHHHHHHHC--CC-CEEEEECCCCCHHHHHHHHHHHHHCCE-E--ECCCCCC--------C-----CC-C-
T ss_conf 999999999999999736--99-689995899707699999999863680-7--4678766--------8-----65-4-
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHHHCCCCCCCEEEEEECCCHHCCCCC
Q ss_conf 8999999999863047767795789999999874114462477764447--56764135677515898602500000027
Q gi|254780821|r 82 DVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG--GSLDATNIIEKVAVSVITSISLDHEKILG 159 (429)
Q Consensus 82 ~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG--Gr~DaTnvi~~~~vavITnI~~DHle~LG 159 (429)
T Consensus 143 ----------------GlPltl------l----~~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fg 196 (451)
T COG0770 143 ----------------GLPLTL------L----RLPADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG 196 (451)
T ss_pred ----------------CCHHHH------H----HCCCCCCEEEEECCCCCCCCHHHHHCCCCCCEEEECCHHHHHHHHCC
T ss_conf ----------------415689------7----47776647999868997774788844058988998380599987428
Q ss_pred CCHHHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCC-----CCCCCEEEEEECCC
Q ss_conf 85234456665311---379833154447178988999986210566523576----3210-----12585244431033
Q gi|254780821|r 160 NTVSAIAKDKSGII---KPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGD----DFYA-----FEKNKCLVYQDKIS 227 (429)
Q Consensus 160 ~tle~Ia~eKa~I~---k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~ 227 (429)
T Consensus 197 -s~e~Ia~aK~Ei~~~~~~~g~ai~n~d-~~~~~~~~---~~~~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~ 271 (451)
T COG0770 197 -SREGIAEAKAEILAGLRPEGIAILNAD-NPLLKNWA---AKIGNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGG 271 (451)
T ss_pred -CHHHHHHHHHHHHHCCCCCCEEEEECC-CHHHHHHH---HHCCCCCEEEECCCCCCCEEEEEEEECCCCEEEEEEECCC
T ss_conf -899999999999815687867998786-17778777---6357875799768877752567789838850799980683
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCC--CHH
Q ss_conf 334444443222211111469999875320000110011222233-66530354228754445787459993363--215
Q gi|254780821|r 228 QTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGH--NPN 304 (429)
Q Consensus 228 ~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AH--Np~ 304 (429)
T Consensus 272 ~-~~~~l~~~G~hn~~NalaA~a~a~~lG~~--~e~i~~~L~~~~~~~gR~~~~~~-------~~g~~-iIdD~YNAnp~ 340 (451)
T COG0770 272 E-AEFELPLPGRHNVTNALAAAALALELGLD--LEEIAAGLKELKPVKGRLEVILL-------ANGKT-LIDDSYNANPD 340 (451)
T ss_pred E-EEEEECCCCHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHCCCCCCCCEEEEC-------CCCCE-EEECCCCCCHH
T ss_conf 3-79994578476899999999999981999--99999999863788866336764-------89818-99737889989
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCC--C----CHHHHHHHHHHH-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 79988865433114777712431134679--8----989999988863-8889998422889984212789899999998
Q gi|254780821|r 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEG--K----KYGRYLEAFVEL-SPIVLSVSLICRGRERQSISITPKVLMQEAK 377 (429)
Q Consensus 305 s~~~l~~~l~~l~~~~~~~i~~I~G~~~d--K----d~~~~l~~l~~~-~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~ 377 (429)
T Consensus 341 sm~aai~~l~~~~~~---~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~v~~~G------------~~~~~i~~~~- 404 (451)
T COG0770 341 SMRAALDLLAALPGR---KGIAVLGDMLELGEESEELHEEVGEYAVEAGIDLVFLVG------------ELSKAIAEAL- 404 (451)
T ss_pred HHHHHHHHHHHCCCC---CCEEEECCHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEC------------CCHHHHHHHC-
T ss_conf 999999999637668---857994776663854899999999999856950999976------------2069999865-
Q ss_pred HCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEECCHHH
Q ss_conf 549978996998999999998603588679999497799
Q gi|254780821|r 378 KLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYL 416 (429)
Q Consensus 378 ~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~yl 416 (429)
T Consensus 405 --~~~~~~f~~~~~l~~~l~~~--l~~gd~vLvKgSr~~ 439 (451)
T COG0770 405 --GNKGIYFADKEELITSLKAL--LRKGDVVLVKGSRGM 439 (451)
T ss_pred --CCCEEECCCHHHHHHHHHHH--CCCCCEEEEECCCCC
T ss_conf --77758607779999999985--677878999737646