HHsearch alignment for GI: 254780821 and conserved domain: PRK00139
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.
Probab=100.00 E-value=0 Score=390.72 Aligned_cols=349 Identities=22% Similarity=0.235 Sum_probs=247.2
Q ss_pred CCCCHHHHHHHHHHC-CCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEEC
Q ss_conf 778889999999872-9958835983999458984799999999999978935141378411012008988847787155
Q gi|254780821|r 2 AADSLLKMGYLLEDL-GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLV 80 (429)
Q Consensus 2 ~~~~l~r~~~ll~~l-g~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i 80 (429)
T Consensus 78 V~d~~~al~~la~~~y~~~~~~l-~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~igT-----------~------g~~~ 139 (481)
T PRK00139 78 VPDLRRALALLAAAFYGNPSDKL-KLIGVTGTNGKTTTAYLIAQILRLLGKKAALIGT-----------L------GNGL 139 (481)
T ss_pred ECCHHHHHHHHHHHHHCCCHHCC-CEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECC-----------C------CEEC
T ss_conf 89999999999999870804318-0899958998434999999999874986314302-----------2------1141
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH-HHHHHCCCCCHHHHHH---HHH-HHHHHHCCCCCCCEEEEEECCCHHC
Q ss_conf 8899999999986304776779578999999-9874114462477764---447-5676413567751589860250000
Q gi|254780821|r 81 EDVELLDVFRRVRRVKSAQNLTIFELSIATA-LVLFSKYPADCAIIEV---GLG-GSLDATNIIEKVAVSVITSISLDHE 155 (429)
Q Consensus 81 ~~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a-~~~f~~~~~d~~vlE~---GlG-Gr~DaTnvi~~~~vavITnI~~DHl 155 (429)
T Consensus 140 ~~~------------~~~~~lTTP~~l~L~~~l~~~~e~g~~~~vmEvSShgl~q~Rv~g---i-~fdiav~TNIs~DHL 203 (481)
T PRK00139 140 GGT------------LIPSGLTTPEALDLQRLLAEAVDAGATHVAMEVSSHALDQGRVDG---L-TFDVAVFTNLTRDHL 203 (481)
T ss_pred CCE------------ECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCC---C-CCCEEEEECCCHHHH
T ss_conf 873------------036678988768899999999987997799984303555221348---8-756899965767785
Q ss_pred CCCCCCHHHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CCCCCC-----CCCCEEEEE
Q ss_conf 00278523445666531137--983315444717898899998621056652357-----632101-----258524443
Q gi|254780821|r 156 KILGNTVSAIAKDKSGIIKP--GCPVVIGHQVYDEVREILVSKAEKMGCPYNVYG-----DDFYAF-----EKNKCLVYQ 223 (429)
Q Consensus 156 e~LG~tle~Ia~eKa~I~k~--~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~-----~~~~~~-----~~~~~~~~~ 223 (429)
T Consensus 204 D~Hg-s~e~Y~~aK~~Lf~~~~~~~aViN~D-D~~~~~~~-~~---~~~~~it~g~~~~~ad~~~~~i~~~~~g~~f~l~ 277 (481)
T PRK00139 204 DYHG-TMEDYFAAKALLFAELGLKAAVINAD-DEVGARLL-AA---LPATVVTYSIEDHGADLRATDIEFSAQGVSFTLV 277 (481)
T ss_pred CCCC-CHHHHHHHHHHHHHCCCCCCEEEECC-CHHHHHHH-HH---CCCCCCEECCCCCCCEEEEEEEEECCCCEEEEEE
T ss_conf 3437-89999999999974657882499468-88999999-97---1788525404788860899999984896199999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCC
Q ss_conf 1033334444443222211111469999875320000110011222233-665303542287544457874599933632
Q gi|254780821|r 224 DKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHN 302 (429)
Q Consensus 224 ~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHN 302 (429)
T Consensus 278 ~~~-~~~~v~l~l~G~hNv~NalaAiava~~lGi~--~~~i~~~L~~~~~v~GRmE~i~~-------~~~~~vivDYAHt 347 (481)
T PRK00139 278 TPW-GEGEVESPLIGRFNVSNLLAAIAALLALGVP--LEDILKALAKLRPVPGRMERVGA-------GGGPLVIVDYAHT 347 (481)
T ss_pred ECC-EEEEEEECCCCHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHCCCCCCCCCEEEEC-------CCCCEEEEECCCC
T ss_conf 589-3799996788788898799999999983989--89999998349999998689987-------9996899976899
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHH---HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH-
Q ss_conf 15799888654331147777124311346798989---99998886388899984228899842127898999999985-
Q gi|254780821|r 303 PNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYG---RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKK- 378 (429)
Q Consensus 303 p~s~~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~~---~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 378 (429)
T Consensus 348 P~sl~~~L~~lr~~---~~~rli~VfG~gG~Rd~~KR~~mg~ia~~~ad~vi~T~DnPr~-------Edp~~I~~~i~~g 417 (481)
T PRK00139 348 PDALEKVLDALRPH---AKGRLICVFGCGGDRDKGKRPLMGAIAERLADVVIVTSDNPRS-------EDPAAIIADILAG 417 (481)
T ss_pred HHHHHHHHHHHHHH---CCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCC-------CCHHHHHHHHHHC
T ss_conf 89999999999876---4898699989867777014189999999719989993999899-------8999999999826
Q ss_pred -CCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf -4997899699899999999860358867999949
Q gi|254780821|r 379 -LGFQAMACSSMIEALSRVRKINEELPPPLILIAG 412 (429)
Q Consensus 379 -~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~G 412 (429)
T Consensus 418 ~~~~~~~~i~dR~~AI~~ai~~a--~~~d~vliaG 450 (481)
T PRK00139 418 ITHANAVVIEDRAEAIKYAIALA--KPGDVVLIAG 450 (481)
T ss_pred CCCCCEEEECCHHHHHHHHHHHC--CCCCEEEEEE
T ss_conf 98799289789999999999855--9999999973