HHsearch alignment for GI: 254780821 and conserved domain: PRK01368
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=5.9e-39 Score=259.82 Aligned_cols=301 Identities=20% Similarity=0.192 Sum_probs=191.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429)
T Consensus 105 ~~IaITGTnGKTTTt~li~~iL~~~g~~~~~---------------~GNI--G~p~l~---------------------- 145 (450)
T PRK01368 105 KFIAITGTNGKSTTTALISHILNSNGLDYPV---------------AGNI--GVPALQ---------------------- 145 (450)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCCEEE---------------ECCC--CHHHHH----------------------
T ss_conf 7799968999748999999999975996289---------------6255--636652----------------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCCC
Q ss_conf 8999999987411446247776444756764135677515898602500000027852344566653113---7983315
Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVVI 181 (429)
Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v~ 181 (429)
T Consensus 146 -----------~~~~~d~~VlElSS-fQl~~~~~~-~p~iAVilNIs~DHLD~h~-s~e~Y~~aK~~If~~~~~~~~~Vi 211 (450)
T PRK01368 146 -----------AKASKDGYVLELSS-FQLDLVKTF-TAKIAVLLNITPDHLDRHQ-DMNGYIAAKSKIFDRMDKDSYAVI 211 (450)
T ss_pred -----------CCCCCCEEEEEECC-CCHHCCCCC-CCCEEEEECCCHHHHHHHC-CHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf -----------52689759999356-522036347-9878999468877987726-878999999999965898888999
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCC----CCCCCCCEEEE--EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 444717898899998621056652357632----10125852444--310333344444432222111114699998753
Q gi|254780821|r 182 GHQVYDEVREILVSKAEKMGCPYNVYGDDF----YAFEKNKCLVY--QDKISQTNLTVLGLVGEHQYINAATAICAVQMA 255 (429)
Q Consensus 182 ~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~l 255 (429)
T Consensus 212 n~D-d~~~~~l~~~l~~~~~~~~i~f~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~G~HN~~NalAA~a~a~~l 290 (450)
T PRK01368 212 NID-NDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKILDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKII 290 (450)
T ss_pred ECC-CHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCEEEEECCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 787-4889999986300455169740345324477488547335520155330045211357565899999999999980
Q ss_pred HHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-C
Q ss_conf 20000110011222233-665303542287544457874599933-63215799888654331147777124311346-7
Q gi|254780821|r 256 GFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV-E 332 (429)
Q Consensus 256 g~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~-~ 332 (429)
T Consensus 291 G--i~~~~I~~aL~~F~glpHRlE~V~~-------~~gv~~iNDSKaTN~~a~~~Al~~~------~--~i~lI~GG~~K 353 (450)
T PRK01368 291 G--VEPKKILESISSFQSLPHRMQYIGS-------INNISFYNDSKATNAISAVQSIKAL------D--NIYWLAGGIPK 353 (450)
T ss_pred C--CCHHHHHHHHHCCCCHHHEEEEEEE-------ECCEEEECCCCCCCHHHHHHHHHCC------C--CEEEEEECCCC
T ss_conf 9--9777778764246770014689999-------8999997178878999999998568------9--73999941577
Q ss_pred CCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCC--CCCCEEEE
Q ss_conf 9898999998886388899984228899842127898999999985499789969989999999986035--88679999
Q gi|254780821|r 333 GKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEE--LPPPLILI 410 (429)
Q Consensus 333 dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~--~~~d~VLV 410 (429)
T Consensus 354 ~~d~~~l~~~~~~-v~~~~l---~G---------~~~~~~~~~~~-~~~~~~~~~~l~~av~~a~~~a~~~~~~~~~VLl 419 (450)
T PRK01368 354 EGGIEEIKPYFSK-IKKAYF---YG---------QAKEMFANTAK-NIVDFVICDNLEQAFDLAYKDAVGDNAEVKNILL 419 (450)
T ss_pred CCCHHHHHHHHHC-CCEEEE---EC---------CCHHHHHHHCC-CCCCEEECCCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 7887999988743-879999---89---------78999998605-8987696499999999999997557878997996