HHsearch alignment for GI: 254780821 and conserved domain: PRK01390
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=2.1e-40 Score=268.74 Aligned_cols=316 Identities=21% Similarity=0.259 Sum_probs=200.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429)
T Consensus 115 ~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~---------------gGNI--G~p~l~l---------------~----- 157 (457)
T PRK01390 115 PFIAITGTNGKSTTTALIAHLLRQAGRDVQM---------------GGNI--GTAILSL---------------E----- 157 (457)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEE---------------ECCC--CHHHCCC---------------C-----
T ss_conf 8899928996498999999999973998699---------------6662--4011123---------------4-----
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444
Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429)
Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429)
T Consensus 158 -----------~~~~~~~~VlElSSf-Ql~~~~~~-~p~iavitNI~~DHLD~h~-s~e~Y~~aK~~i~~~~~~~Vin~D 223 (457)
T PRK01390 158 -----------PPKAGRVYVVECSSY-QIDLTPSL-DPTVGILLNLTPDHLDRHG-TMEHYAAIKERLVAGAGTAVIGVD 223 (457)
T ss_pred -----------CCCCCCEEEEEECCC-HHHHHHCC-CCCEEEEECCCHHHHHHCC-CHHHHHHHHHHHHCCCCEEEEECC
T ss_conf -----------688996699992575-26544006-9988999178877865508-999999999998557986999688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCC----CCCCCCCEEEEEECCCC---CCCC-CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 717898899998621056652357632----10125852444310333---3444-444322221111146999987532
Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYGDDF----YAFEKNKCLVYQDKISQ---TNLT-VLGLVGEHQYINAATAICAVQMAG 256 (429)
Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~-~l~l~G~hn~~Na~~Aiaa~~~lg 256 (429)
T Consensus 224 -D~~~~~l~-~~~~~~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~G~HN~~NalAAia~a~~lG 301 (457)
T PRK01390 224 -DAYCQAIA-DRLERAGKRVVRISVEKPLARGIYADGGKLVRATGGARHEIADLAGIGSLRGRHNAQNAAAAVAACLALG 301 (457)
T ss_pred -CHHHHHHH-HHHHHCCCEEEEEECCCCCCCCEEEECCEEEECCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf -88899999-9987638849997167656686498578899847983454431432345775426999999999999818
Q ss_pred HCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CC
Q ss_conf 0000110011222233-665303542287544457874599933-63215799888654331147777124311346-79
Q gi|254780821|r 257 FTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV-EG 333 (429)
Q Consensus 257 ~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~-~d 333 (429)
T Consensus 302 --i~~e~i~~aL~~F~Gl~hR~E~V~~-------~~Gv~~iNDSKaTN~~at~~Al~s~------~--~i~lI~GG~~K~ 364 (457)
T PRK01390 302 --VSPEEIQAGLRSFPGLAHRMEQVGR-------RGKVLFVNDSKATNADAAAPALSSF------P--NIYWIAGGKPKA 364 (457)
T ss_pred --CCHHHHHHHHHHCCCCCCCEEEEEE-------CCCCEEECCCCCCCHHHHHHHHHCC------C--CEEEEECCCCCC
T ss_conf --9899999999748999985279754-------2783385377678989999999737------8--859994504788
Q ss_pred CCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCC--CCCCCEEEE-
Q ss_conf 89899999888638889998422889984212789899999998549978996998999999998603--588679999-
Q gi|254780821|r 334 KKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINE--ELPPPLILI- 410 (429)
Q Consensus 334 Kd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~--~~~~d~VLV- 410 (429)
T Consensus 365 ~d~~~l~~~~~~-v~~~~---li---------G~~~~~~~~~l~~-~~~~~~~~~l~~av~~a~~~a~~~~~~gd~VLlS 430 (457)
T PRK01390 365 GGIESLAPFFPR-IAKAY---LI---------GEAAEEFAATLGG-AVPYEISGTLEAAVAAAARDAAASGAPEPVVLLS 430 (457)
T ss_pred CCHHHHHHHHHC-CCEEE---EE---------CCCHHHHHHHHHC-CCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 897999998743-35999---98---------9888999998736-7987985989999999999998518999989979
Q ss_pred --ECCH------HHHHHHHHHC
Q ss_conf --4977------9999999987
Q gi|254780821|r 411 --AGSL------YLAGEALREN 424 (429)
Q Consensus 411 --~GS~------ylvge~l~~~ 424 (429)
T Consensus 431 PacaSfD~f~nyeeRG~~Fk~~ 452 (457)
T PRK01390 431 PACASFDQFKNFEVRGDAFREL 452 (457)
T ss_pred CCCCCCCCCCCHHHHHHHHHHH
T ss_conf 6240401426999999999999