HHsearch alignment for GI: 254780821 and conserved domain: PRK01438

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=2e-40  Score=268.91  Aligned_cols=305  Identities=16%  Similarity=0.201  Sum_probs=195.8

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf             98399945898479999999999997893514137841101200898884778715588999999999863047767795
Q gi|254780821|r   24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI  103 (429)
Q Consensus        24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~  103 (429)
T Consensus       122 ~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~--------------~GNI---G~p~l~~--------~-----------  165 (481)
T PRK01438        122 APWLAVTGTNGKTTTVQMLASILRAAGLRAAA--------------VGNI---GVPVLDA--------V-----------  165 (481)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEE--------------EEEC---CHHHHHH--------H-----------
T ss_conf             87899938997460999999999966997079--------------9625---6777764--------2-----------


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCC-CCCC
Q ss_conf             789999999874114462477764447567641356775158986025000000278523445666531137983-3154
Q gi|254780821|r  104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCP-VVIG  182 (429)
Q Consensus       104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~-~v~~  182 (429)
T Consensus       166 -----------~~~~~~d~~V~ElSS-fqL~~~~~~-~p~iavitNIs~DHLD~h~-s~e~Y~~aK~~If~~~~~~~v~n  231 (481)
T PRK01438        166 -----------RGPDGYDVLAVELSS-FQLHWAPSV-RPHSAAVLNLAPDHLDWHG-SMEAYAADKGRVYEGNTVACVYN  231 (481)
T ss_pred             -----------CCCCCCCEEEEECCC-CCCCCCCCC-CCCEEEEECCCHHHHHHHC-CHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             -----------288886089998047-651334455-7648997068777866523-59899999999862785149970


Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-----CCCCC---CEEEEEEC----CCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             447178988999986210566523576321-----01258---52444310----3333444444322221111146999
Q gi|254780821|r  183 HQVYDEVREILVSKAEKMGCPYNVYGDDFY-----AFEKN---KCLVYQDK----ISQTNLTVLGLVGEHQYINAATAIC  250 (429)
Q Consensus       183 ~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~----~~~~~~~~l~l~G~hn~~Na~~Aia  250 (429)
T Consensus       232 ~-dD~~~~~l~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a  310 (481)
T PRK01438        232 V-ADPATEDLVREADVVEGARAIGFTLGTPGPSDLGIVDGILVDRAFVEDRFTSAQELATLSDVGPAAPHNVANALAAAA  310 (481)
T ss_pred             C-CCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEECCEEEECEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHH
T ss_conf             5-778899999860224477078873588871201210345530203430234530001066406765769999999999


Q ss_pred             HHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             9875320000110011222233-665303542287544457874599933-63215799888654331147777124311
Q gi|254780821|r  251 AVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVI  328 (429)
Q Consensus       251 a~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~  328 (429)
T Consensus       311 ~a~~lG--i~~~~i~~aL~~F~Gl~hR~E~v~~-------~~GV~fiNDSKaTN~~A~~~AL~~~--------~~i~lI~  373 (481)
T PRK01438        311 LARAFG--VSPAAVRDGLRAFRPDAHRIEHVAD-------ADGVTYVDDSKATNPHAAEASLAAY--------PSVVWIA  373 (481)
T ss_pred             HHHHCC--CCHHHHHHHHHHCCCCCCEEEEEEE-------ECCEEEECCCCCCCHHHHHHHHHHC--------CCEEEEE
T ss_conf             999829--9889999888634897733789999-------9999998068878988999998724--------9889993


Q ss_pred             CC-CCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC--EE-----EECCHHHHHHHHHHHC
Q ss_conf             34-6798989999988863888999842288998421278989999999854997--89-----9699899999999860
Q gi|254780821|r  329 GM-VEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQ--AM-----ACSSMIEALSRVRKIN  400 (429)
Q Consensus       329 G~-~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~-----~~~~~~eAi~~a~~~~  400 (429)
T Consensus       374 GG~~Kg~d~~~l~~~~~~~vk~~~l~------------G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~av~~a~~~a  441 (481)
T PRK01438        374 GGLAKGAHFDDLVRAHAARLRGVVLI------------GADRALIREALARHAPDVPVVDVDRTDTEAMARAVRLAARLA  441 (481)
T ss_pred             CCCCCCCCHHHHHHHHHHHCEEEEEE------------CCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHC
T ss_conf             78657889899999986013399997------------789999999997228987457731023789999999999638


Q ss_pred             CCCCCCEEEE
Q ss_conf             3588679999
Q gi|254780821|r  401 EELPPPLILI  410 (429)
Q Consensus       401 ~~~~~d~VLV  410 (429)
T Consensus       442 --~~gd~VLl  449 (481)
T PRK01438        442 --RPGDTVLL  449 (481)
T ss_pred             --CCCCEEEE
T ss_conf             --99898998