HHsearch alignment for GI: 254780821 and conserved domain: PRK01710
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=3.6e-40 Score=267.33 Aligned_cols=298 Identities=17% Similarity=0.215 Sum_probs=192.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429)
T Consensus 118 ~~IaVTGTnGKTTTtsmi~~iL~~~g~~~~---------------~gGNi--G~p~~--------~~~~----------- 161 (458)
T PRK01710 118 KVFGITGSDGKTTTTTLIYEMLKEEGYKTW---------------VGGNI--GTPLF--------SNIE----------- 161 (458)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCCEE---------------EECCC--CCHHH--------HHHH-----------
T ss_conf 779993689847899999999998499758---------------51662--64468--------8885-----------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCCC
Q ss_conf 8999999987411446247776444756764135677515898602500000027852344566653113---7983315
Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVVI 181 (429)
Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v~ 181 (429)
T Consensus 162 -----------~~~~~d~~V~E~SS~-ql~~~~--~~P~iaVitNi~~DHLD~h~-s~e~Y~~aK~~i~~~~~~~~~~i~ 226 (458)
T PRK01710 162 -----------EIKEEDKVVLELSSF-QLMTMD--VSPEVAVVTNLSPNHLDVHK-DMEEYVDAKKNIFKYQSSNDLLVL 226 (458)
T ss_pred -----------HCCCCCEEEEEECHH-HHHHCC--CCCCEEEEECCCHHHHHHHH-HHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf -----------057886699993215-553054--68878998358853650654-199999999999963887737999
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC----CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4447178988999986210566523576321----012585244431033334444443222211111469999875320
Q gi|254780821|r 182 GHQVYDEVREILVSKAEKMGCPYNVYGDDFY----AFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGF 257 (429)
Q Consensus 182 ~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~ 257 (429)
T Consensus 227 n~D-d~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~G~HN~~N~lAA~aa~~-~g- 298 (458)
T PRK01710 227 NKD-NEITNGM----EKEAKGDVVKFSRKEKLKEGAYYKDGKLYIRGK-EVCKKDDIKLKGMHNVENLLAAFCAVN-DD- 298 (458)
T ss_pred ECC-CHHHHHH----HHHCCCCEEEECCCCCCCCCCEEECCEEEECCC-EECCHHHCCCCCHHHHHHHHHHHHHHH-CC-
T ss_conf 378-6999998----776368789953665456673676688998784-011324216776544999999999998-19-
Q ss_pred CCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCC
Q ss_conf 000110011222233-665303542287544457874599933-6321579988865433114777712431134-6798
Q gi|254780821|r 258 TLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGK 334 (429)
Q Consensus 258 ~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dK 334 (429)
T Consensus 299 -i~~e~i~~aL~~F~Gl~hR~E~v~~-------~~gv~~iNDSkaTn~~s~~~AL~~~~-------~~iilI~GG~~K~~ 363 (458)
T PRK01710 299 -VSIESMKKVATTFTGVEHRCEFVRE-------INGVKYYNDSIASSPTRTLAGLNAFE-------KPVILIAGGYDKKI 363 (458)
T ss_pred -CCHHHHHHHHHHCCCHHHHHEEEEE-------ECCEEEEECCCCCCHHHHHHHHHCCC-------CCEEEEECCCCCCC
T ss_conf -9999999998754353423146578-------74767981576689899999997167-------77299964656678
Q ss_pred CHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHH----HH--CCCCEEEECCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 989999988863888999842288998421278989999999----85--499789969989999999986035886799
Q gi|254780821|r 335 KYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEA----KK--LGFQAMACSSMIEALSRVRKINEELPPPLI 408 (429)
Q Consensus 335 d~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~----~~--~~~~~~~~~~~~eAi~~a~~~~~~~~~d~V 408 (429)
T Consensus 364 d~~~l~~~~~~~~k~vi~---~G~---------~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~Av~~a~~~a--~~gd~V 429 (458)
T PRK01710 364 PFEPLAEEGYEKIKILIL---MGD---------TKNKIKEAFKKVEEEKGIKIPIVIVNSLEEAVKVAKNIA--EKGDII 429 (458)
T ss_pred CHHHHHHHHHHHCCEEEE---ECC---------CHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHC--CCCCEE
T ss_conf 869999987630529999---788---------779999999876663168865233735999999999758--897989
Q ss_pred EE
Q ss_conf 99
Q gi|254780821|r 409 LI 410 (429)
Q Consensus 409 LV 410 (429)
T Consensus 430 Ll 431 (458)
T PRK01710 430 TL 431 (458)
T ss_pred EE
T ss_conf 98