HHsearch alignment for GI: 254780821 and conserved domain: PRK02006
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=4.6e-41 Score=272.84 Aligned_cols=307 Identities=19% Similarity=0.224 Sum_probs=208.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429)
T Consensus 123 ~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~---------------~GNI--G~p~l~~-l~-------~~~~------- 170 (501)
T PRK02006 123 KVLAITGTNGKTTTTSLTGLLCERAGKKVAV---------------AGNI--SPAALDK-LA-------EAID------- 170 (501)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEE---------------ECCC--CCHHHHH-HH-------HHHC-------
T ss_conf 4899938996687999999999976997465---------------2564--6102677-87-------6422-------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444
Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429)
Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429)
T Consensus 171 -----------~~~~~d~~VlElSS-fQLe~~~~~-~p~vaVilNIs~DHLD~h~-s~e~Y~~aK~rif~~~~~~V~n~D 236 (501)
T PRK02006 171 -----------AAALPDVWVLELSS-FQLETTHTF-APDAATVLNITQDHLDWHG-SMAAYAAAKGRIFGPATVRVLNRD 236 (501)
T ss_pred -----------CCCCCCEEEEEECH-HHHCCCCCC-CCCEEEEECCCHHHHHHHC-CHHHHHHHHHHHHCCCCEEEEECC
T ss_conf -----------57768689999664-675756557-9678999078865644423-799999999987234855999488
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCC-------CCCCCCC-CEEEEEE--------------------------CCCCCC
Q ss_conf 71789889999862105665235763-------2101258-5244431--------------------------033334
Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYGDD-------FYAFEKN-KCLVYQD--------------------------KISQTN 230 (429)
Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~--------------------------~~~~~~ 230 (429)
T Consensus 237 -D~~~~~~~~~~~~~~--~~~~fg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (501)
T PRK02006 237 -DALVMAMAPPAAAAD--APVTFGLDEPAQDGDYGLLRENGMAWLVEAEDRDAADEPAPTRRRKKDAAPPPDIALKRLMP 313 (501)
T ss_pred -CHHHHHHHHHCCCCC--EEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHCCC
T ss_conf -888998766505664--16885057756665402562377057873032210000001221023334443310110355
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHH
Q ss_conf 444443222211111469999875320000110011222233-665303542287544457874599933-632157998
Q gi|254780821|r 231 LTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLV 308 (429)
Q Consensus 231 ~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~ 308 (429)
T Consensus 314 ~~~L~l~G~HN~~NalAA~a~a~~lG--i~~e~i~~aL~~F~GlpHR~E~V~~-------~~gv~~iNDSKaTN~~at~~ 384 (501)
T PRK02006 314 ADALRIRGLHNAANALAALALARAIG--LPAAPLLHGLREYRGEPHRVEVIAT-------IDDVDYVDDSKGTNVGATVA 384 (501)
T ss_pred CHHCCCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHCCCCCCCCCEEEEEE-------ECCEEEECCCCCCCHHHHHH
T ss_conf 20103567206999999999999859--9878987663155787652589999-------67889973787789899999
Q ss_pred HHHHHHHHCCCCCCCEEEEECC-CCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEC
Q ss_conf 8865433114777712431134-679898999998886388899984228899842127898999999985499789969
Q gi|254780821|r 309 VSKEISKLKGSSNKPFYLVIGM-VEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACS 387 (429)
Q Consensus 309 l~~~l~~l~~~~~~~i~~I~G~-~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 387 (429)
T Consensus 385 Al~s~-------~~~iilI~GG~~K~~d~~~L~~~~~~~~k~vil~------------G~~~~~i~~~l~~~~~~~~~~~ 445 (501)
T PRK02006 385 ALDGL-------AQRVVLIAGGDGKGQDFSPLAAPVARWARAVVLI------------GRDAPAIRAALADTGVPLVDAA 445 (501)
T ss_pred HHHHC-------CCCEEEEEECCCCCCCHHHHHHHHHHHCEEEEEE------------CCCHHHHHHHHHCCCCEEEECC
T ss_conf 99707-------8974999805777779799999998537099998------------9899999999751798079859
Q ss_pred CHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 98999999998603588679999
Q gi|254780821|r 388 SMIEALSRVRKINEELPPPLILI 410 (429)
Q Consensus 388 ~~~eAi~~a~~~~~~~~~d~VLV 410 (429)
T Consensus 446 ~l~~Av~~a~~~a--~~gd~VLl 466 (501)
T PRK02006 446 TLEEAVRAAAELA--QPGDAVLL 466 (501)
T ss_pred CHHHHHHHHHHHC--CCCCEEEE
T ss_conf 9999999999757--89798998