HHsearch alignment for GI: 254780821 and conserved domain: PRK02472

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=6.7e-42  Score=278.02  Aligned_cols=299  Identities=21%  Similarity=0.283  Sum_probs=203.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r   25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF  104 (429)
Q Consensus        25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F  104 (429)
T Consensus       113 ~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~--------------~GN---iG~p~~~~--~------------------  155 (450)
T PRK02472        113 PIIGITGSNGKTTTTTLIAEMLNAGGQHGLL--------------AGN---IGYPASEV--A------------------  155 (450)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCEEE--------------EEE---CCCCCHHH--H------------------
T ss_conf             7899827999731999999999974997399--------------941---67641245--5------------------


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCCC
Q ss_conf             8999999987411446247776444756764135677515898602500000027852344566653113---7983315
Q gi|254780821|r  105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVVI  181 (429)
Q Consensus       105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v~  181 (429)
T Consensus       156 ----------~~~~~~d~~VlE~SS-fql~~~~~~-~p~iavitNI~~DHLD~h~-s~e~Y~~aK~~i~~~~~~~~~~v~  222 (450)
T PRK02472        156 ----------QKATADDTLVTELSS-FQLMGVETF-RPHIAVITNIFEAHLDYHG-TFENYVAAKWNIQKNQTEDDYLVL  222 (450)
T ss_pred             ----------HCCCCCCEEEEEECC-CCHHHHCCC-CCCEEEEECCCHHHHHHHC-CHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             ----------447898779999065-514100225-8868999368877976634-899999999999955996877999


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             4447178988999986210566523576321---0125852444310333344444432222111114699998753200
Q gi|254780821|r  182 GHQVYDEVREILVSKAEKMGCPYNVYGDDFY---AFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFT  258 (429)
Q Consensus       182 ~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~  258 (429)
T Consensus       223 n~D-d~~~~~l~----~~~~~~~i~fs~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~G~HN~~NalaAia~a~~lG--  294 (450)
T PRK02472        223 NAD-QEEVKELA----KQTKATVVPFSTTKEVDGAYIKDGALYFKGE-KIMAADDIVLPGEHNLENILAAIAVAKLAG--  294 (450)
T ss_pred             ECC-CHHHHHHH----HHCCCEEEEECCCCCCCCCEEECCEEEECCE-EEEEHHHCCCCCHHHHHHHHHHHHHHHHCC--
T ss_conf             588-79999999----7579708985367546651762787998884-566423236775534999999999999829--


Q ss_pred             CHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CCCC
Q ss_conf             00110011222233-665303542287544457874599933-63215799888654331147777124311346-7989
Q gi|254780821|r  259 LEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV-EGKK  335 (429)
Q Consensus       259 i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~-~dKd  335 (429)
T Consensus       295 i~~~~i~~aL~~F~Gl~hRlE~v~~-------~~Gv~~iNDSKaTN~~at~~Al~~~~-------~~iilI~GG~~Kg~d  360 (450)
T PRK02472        295 VSNEAIAEVLSTFTGVKHRLQYVGT-------INGRKFYNDSKATNILATQKALSGFN-------QPVILLAGGLDRGNE  360 (450)
T ss_pred             CCHHHHHHHHHHCCCCCEEEEEEEE-------ECCEEEEECCCCCCHHHHHHHHHCCC-------CCEEEEEECCCCCCC
T ss_conf             9878999998744884337999999-------74778982688889999999984589-------987999915556888


Q ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             899999888638889998422889984212789899999998549978996998999999998603588679999
Q gi|254780821|r  336 YGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI  410 (429)
Q Consensus       336 ~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV  410 (429)
T Consensus       361 ~~~l~~~~~-~vk~v~~---~---------G~~~~~i~~~~~~~~~~~~~~~~l~~Av~~a~~~a--~~gd~VLl  420 (450)
T PRK02472        361 FDELIPYLK-NVKAMVV---F---------GETAPKLARAANKAGITIVEADNVEDAVPKAYALS--EPGDVILL  420 (450)
T ss_pred             HHHHHHHHH-CCCEEEE---E---------CCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHC--CCCCEEEE
T ss_conf             799999973-7689999---6---------88999999999737971898799999999999858--89598997