HHsearch alignment for GI: 254780821 and conserved domain: PRK02472
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=6.7e-42 Score=278.02 Aligned_cols=299 Identities=21% Similarity=0.283 Sum_probs=203.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429)
T Consensus 113 ~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~--------------~GN---iG~p~~~~--~------------------ 155 (450)
T PRK02472 113 PIIGITGSNGKTTTTTLIAEMLNAGGQHGLL--------------AGN---IGYPASEV--A------------------ 155 (450)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCEEE--------------EEE---CCCCCHHH--H------------------
T ss_conf 7899827999731999999999974997399--------------941---67641245--5------------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCCC
Q ss_conf 8999999987411446247776444756764135677515898602500000027852344566653113---7983315
Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVVI 181 (429)
Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v~ 181 (429)
T Consensus 156 ----------~~~~~~d~~VlE~SS-fql~~~~~~-~p~iavitNI~~DHLD~h~-s~e~Y~~aK~~i~~~~~~~~~~v~ 222 (450)
T PRK02472 156 ----------QKATADDTLVTELSS-FQLMGVETF-RPHIAVITNIFEAHLDYHG-TFENYVAAKWNIQKNQTEDDYLVL 222 (450)
T ss_pred ----------HCCCCCCEEEEEECC-CCHHHHCCC-CCCEEEEECCCHHHHHHHC-CHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf ----------447898779999065-514100225-8868999368877976634-899999999999955996877999
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 4447178988999986210566523576321---0125852444310333344444432222111114699998753200
Q gi|254780821|r 182 GHQVYDEVREILVSKAEKMGCPYNVYGDDFY---AFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFT 258 (429)
Q Consensus 182 ~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~ 258 (429)
T Consensus 223 n~D-d~~~~~l~----~~~~~~~i~fs~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~G~HN~~NalaAia~a~~lG-- 294 (450)
T PRK02472 223 NAD-QEEVKELA----KQTKATVVPFSTTKEVDGAYIKDGALYFKGE-KIMAADDIVLPGEHNLENILAAIAVAKLAG-- 294 (450)
T ss_pred ECC-CHHHHHHH----HHCCCEEEEECCCCCCCCCEEECCEEEECCE-EEEEHHHCCCCCHHHHHHHHHHHHHHHHCC--
T ss_conf 588-79999999----7579708985367546651762787998884-566423236775534999999999999829--
Q ss_pred CHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CCCC
Q ss_conf 00110011222233-665303542287544457874599933-63215799888654331147777124311346-7989
Q gi|254780821|r 259 LEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV-EGKK 335 (429)
Q Consensus 259 i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~-~dKd 335 (429)
T Consensus 295 i~~~~i~~aL~~F~Gl~hRlE~v~~-------~~Gv~~iNDSKaTN~~at~~Al~~~~-------~~iilI~GG~~Kg~d 360 (450)
T PRK02472 295 VSNEAIAEVLSTFTGVKHRLQYVGT-------INGRKFYNDSKATNILATQKALSGFN-------QPVILLAGGLDRGNE 360 (450)
T ss_pred CCHHHHHHHHHHCCCCCEEEEEEEE-------ECCEEEEECCCCCCHHHHHHHHHCCC-------CCEEEEEECCCCCCC
T ss_conf 9878999998744884337999999-------74778982688889999999984589-------987999915556888
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 899999888638889998422889984212789899999998549978996998999999998603588679999
Q gi|254780821|r 336 YGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI 410 (429)
Q Consensus 336 ~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV 410 (429)
T Consensus 361 ~~~l~~~~~-~vk~v~~---~---------G~~~~~i~~~~~~~~~~~~~~~~l~~Av~~a~~~a--~~gd~VLl 420 (450)
T PRK02472 361 FDELIPYLK-NVKAMVV---F---------GETAPKLARAANKAGITIVEADNVEDAVPKAYALS--EPGDVILL 420 (450)
T ss_pred HHHHHHHHH-CCCEEEE---E---------CCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHC--CCCCEEEE
T ss_conf 799999973-7689999---6---------88999999999737971898799999999999858--89598997