HHsearch alignment for GI: 254780821 and conserved domain: PRK03369
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=4.6e-40 Score=266.65 Aligned_cols=301 Identities=19% Similarity=0.195 Sum_probs=187.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795
Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429)
Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429)
T Consensus 117 ~~~IaVTGTnGKTTttsli~~iL~~~g~~~~~--------------~GNi---G~p~~~--------------------- 158 (487)
T PRK03369 117 RRWLVVTGTNGKTTTTSMLHAMLRAAGRRSVL--------------CGNI---GSPVLD--------------------- 158 (487)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEE--------------EECC---CHHHHH---------------------
T ss_conf 65599979887278999999999858998599--------------8136---657664---------------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 78999999987411446247776444756764135677515898602500000027852344566653113798331544
Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGH 183 (429)
Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~ 183 (429)
T Consensus 159 -----------~~~~~~~~~V~ElSS-fql~~~~~~-~p~iaVitNI~~DHLD~h~-s~e~Y~~aK~ri~~~-~~~v~n~ 223 (487)
T PRK03369 159 -----------VLDEPAELLAVELSS-FQLHWAPSL-RPEAGAVLNIAEDHLDWHG-TMAAYAAAKARALTG-RVAVAGL 223 (487)
T ss_pred -----------HCCCCCCEEEEEECC-CCCCCCCCC-CCCEEEECCCCHHHHHHCC-CHHHHHHHHHHHHCC-CEEEEEC
T ss_conf -----------124788589998136-543446666-8547885278877875428-999999997557339-8799968
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCEEEE---EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 47178988999986210566523576--3210125852444---310333344444432222111114699998753200
Q gi|254780821|r 184 QVYDEVREILVSKAEKMGCPYNVYGD--DFYAFEKNKCLVY---QDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFT 258 (429)
Q Consensus 184 ~~~~~~~~~i~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~ 258 (429)
T Consensus 224 D-D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HNv~NalAA~a~a~~lG-- 299 (487)
T PRK03369 224 D-DSRAAALLDTAPAPVRVG-FRLGEPAAGELGVRDGHLVDRAFADDLTLAPVDSIPVPGPVGVLDALAAAALARAVG-- 299 (487)
T ss_pred C-CHHHHHHHHHCCCCEEEE-EECCCCCCCCEEEECCEEEEEECCCCCEEEEHHHCCCCCHHHHHHHHHHHHHHHHCC--
T ss_conf 7-688999974278767996-532787644212653689984136773672466458863536998999999999849--
Q ss_pred CHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCC
Q ss_conf 00110011222233-665303542287544457874599933-6321579988865433114777712431134-67989
Q gi|254780821|r 259 LEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGKK 335 (429)
Q Consensus 259 i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dKd 335 (429)
T Consensus 300 i~~~~i~~aL~~F~glphR~E~v~~-------~~Gv~fiNDSKaTn~~a~~~Al~s~------~--~iilI~GG~~Kg~~ 364 (487)
T PRK03369 300 VPAGAIADALASFRVGRHRAEVVAV-------ADGITYVDDSKATNPHAARASILAY------P--RVVWIAGGLLKGAS 364 (487)
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEEE-------ECCEEEEECCCCCCHHHHHHHHHHC------C--CEEEECCCCCCCCC
T ss_conf 9999999999857999985289999-------9999998257668988999998615------5--50896155436777
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC---------------------------------C
Q ss_conf 8999998886388899984228899842127898999999985499---------------------------------7
Q gi|254780821|r 336 YGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGF---------------------------------Q 382 (429)
Q Consensus 336 ~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------------------~ 382 (429)
T Consensus 365 ~~~L~~~~~~~v~~v~---l~G~d---------~~~i~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 432 (487)
T PRK03369 365 VDALVAEMASRLVGAV---LIGRD---------RAVVAEALSRHAPDVPVVEVVTGEDAGMPATPEACVLDVTKVDDAGG 432 (487)
T ss_pred HHHHHHHHHHHEEEEE---EECCC---------HHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 0778999975425999---97888---------89999999742776652133113222210013454433332100112
Q ss_pred EEEECCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 8996998999999998603588679999
Q gi|254780821|r 383 AMACSSMIEALSRVRKINEELPPPLILI 410 (429)
Q Consensus 383 ~~~~~~~~eAi~~a~~~~~~~~~d~VLV 410 (429)
T Consensus 433 ~~~~~~l~~AV~~A~~~a--~~GdvVLL 458 (487)
T PRK03369 433 TLGDAVMTAAVAAARGLA--RPGDTVLL 458 (487)
T ss_pred CHHHHHHHHHHHHHHHHC--CCCCEEEE
T ss_conf 035779999999999748--99998997