HHsearch alignment for GI: 254780821 and conserved domain: PRK03806
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=6.4e-41 Score=271.99 Aligned_cols=298 Identities=16% Similarity=0.173 Sum_probs=197.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429)
T Consensus 106 ~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~---------------gGNi--G~p~~~---------------------- 146 (438)
T PRK03806 106 PIVAITGSNGKSTVTTLVGEMAKAAGVNVGV---------------GGNI--GLPALM---------------------- 146 (438)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCCEEE---------------EECC--CCCHHH----------------------
T ss_conf 8899948998489999999999865997567---------------7157--752777----------------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444
Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429)
Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429)
T Consensus 147 ----------~~~~~~d~~VlElSS-fQLe~~~~~-~p~vavilNi~~DHLDr~~~s~e~Y~~aK~rI~~~~~~~v~n~d 214 (438)
T PRK03806 147 ----------LLDQDCELYVLELSS-FQLETTSSL-QAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNAD 214 (438)
T ss_pred ----------HHCCCCCEEEEECCC-CCCCCCCCC-CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf ----------513767579983245-330023545-76378863588878877654599999999988627968999475
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCCCC-EEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf 7178988999986210566523576---321012585-244431033334444443222211111469999875320000
Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYGD---DFYAFEKNK-CLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLE 260 (429)
Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~ 260 (429)
T Consensus 215 -D~~~~~~-~~----~~~~~i~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lG--i~ 286 (438)
T PRK03806 215 -DALTMPV-RG----ADERCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNVKEMKLSGRHNYTNALAALALADAVG--IP 286 (438)
T ss_pred -CHHHHHH-HH----CCCCEEEEECCCCCEEEEECCCCEEEEECCEEEEECHHCCCCCCHHHHHHHHHHHHHHHCC--CC
T ss_conf -1877986-40----3565589823566436760577368973780354012126667204988999999999839--99
Q ss_pred HHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCCHH
Q ss_conf 110011222233-665303542287544457874599933-6321579988865433114777712431134-6798989
Q gi|254780821|r 261 KECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGKKYG 337 (429)
Q Consensus 261 ~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dKd~~ 337 (429)
T Consensus 287 ~e~i~~aL~sF~gl~HRlE~v~~-------~~gv~fiNDSKaTN~~a~~~Al~s~~~-----~~~i~lI~GG~~K~~d~~ 354 (438)
T PRK03806 287 RASSLKALTTFTGLPHRFQLVLE-------HNGVRWINDSKATNVGSTEAALNGLHV-----DGTLHLLLGGDGKSADFS 354 (438)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEE-------ECCEEEEECCCCCCHHHHHHHHHHCCC-----CCCEEEEECCCCCCCCHH
T ss_conf 89986552047999973389999-------799999989721589999999982620-----397799954775557879
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9999888638889998422889984212789899999998549978996998999999998603588679999
Q gi|254780821|r 338 RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI 410 (429)
Q Consensus 338 ~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV 410 (429)
T Consensus 355 ~l~~~~~~~~~~~---~~~G~---------~~~~~~~~~~---~~~~~~~~l~~Av~~a~~~a--~~gd~VLl 410 (438)
T PRK03806 355 PLARYLNGDNIRL---YCFGR---------DGAQLAALRP---EVAQLTETMEQAMRLLAPRV--QPGDMVLL 410 (438)
T ss_pred HHHHHHHCCCEEE---EEECC---------CHHHHHHHCC---CCCHHHHHHHHHHHHHHHHC--CCCCEEEE
T ss_conf 9999861265699---99777---------8899996412---20415400999999999866--89998998