HHsearch alignment for GI: 254780821 and conserved domain: PRK03815
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=99.98 E-value=1e-30 Score=208.88 Aligned_cols=280 Identities=18% Similarity=0.203 Sum_probs=174.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795
Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429)
Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429)
T Consensus 89 ~~~I~ITGTNGKsTtt~li~~iL~~~g~~~-----------------~GNI--G~Pl~~-----~--------------- 129 (401)
T PRK03815 89 PFSIWISGTNGKTTTTQMLTHLLEDFGAVS-----------------GGNI--GTPLAE-----L--------------- 129 (401)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCCCCE-----------------ECCC--CHHHHH-----C---------------
T ss_conf 874899847777899999999998669813-----------------0416--643886-----2---------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCC
Q ss_conf 78999999987411446247776444756764135677515898602500000027852344566653113---798331
Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVV 180 (429)
Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v 180 (429)
T Consensus 130 -------------~~~~~~~VlElSS-fQLe~~~~~-~p~iavilNis~DHLDrH~-s~e~Y~~aK~~I~~~~~~~~~~i 193 (401)
T PRK03815 130 -------------DPNAKIWVLETSS-FTLHYTNKA-KPNIYLLLPITPDHLSWHG-SFENYEKAKLKPLKLMNEGSVAI 193 (401)
T ss_pred -------------CCCCCEEEEEECH-HHCCCCCCC-CCCEEEEECCCCCHHCCCC-CHHHHHHHHHHHHHHCCCCCEEE
T ss_conf -------------8778879999344-540667566-8768988368820523626-89999999999996288776799
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf 54447178988999986210566523576321012585244431033334444443222211111469999875320000
Q gi|254780821|r 181 IGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLE 260 (429)
Q Consensus 181 ~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~ 260 (429)
T Consensus 194 ~~~~~-----~~~-----~~~~~~i~~~~~~~~----------~~~~~i~~~~i~~~~~~~~~~-~~a~~~~~~~----~ 248 (401)
T PRK03815 194 LPKKY-----KET-----PTKAQKISYEDEEDL----------AEKFGIDTEKINFKGPFLLDA-LLALAVEKIL----F 248 (401)
T ss_pred ECHHH-----CCC-----CCCCEEEEECCHHHH----------HHHCCCCHHHCCCCHHHHHHH-HHHHHHHHCC----C
T ss_conf 72233-----047-----666179972662777----------876588778705645899999-9999998556----6
Q ss_pred HHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCCHH
Q ss_conf 110011222233-665303542287544457874599933-6321579988865433114777712431134-6798989
Q gi|254780821|r 261 KECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGKKYG 337 (429)
Q Consensus 261 ~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dKd~~ 337 (429)
T Consensus 249 ~~~~~~~l~~F~gl~HRlE~v~~~-------~gv~fiNDSKATN~~At~~Al~~~------~~~~iilI~GG~~Kg~d~~ 315 (401)
T PRK03815 249 DENDYERLNAFVIEAHKLEEFRDK-------QGRLWVDDSKATNIDATIQALKRY------KDKKIHLILGGDDKGVDLT 315 (401)
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEE-------CCEEEECCCCCCCHHHHHHHHHHC------CCCCEEEEECCCCCCCCHH
T ss_conf 355899998489988853899984-------898996688789889999999837------6786799963765567879
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9999888638889998422889984212789899999998549978996998999999998603588679999
Q gi|254780821|r 338 RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI 410 (429)
Q Consensus 338 ~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV 410 (429)
T Consensus 316 ~L~~~i~~~~~~v~~~------------G~~~~~i~~~~~~~~~~~~~~~~l~eAv~~a~~~a--~~gdvVLL 374 (401)
T PRK03815 316 PLFEELKNFDIEIYAI------------GSNAEKILALAKEFNIKAQKCEFLEKAVNEIKKVL--KQNEVALL 374 (401)
T ss_pred HHHHHHHHHCEEEEEE------------CCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHC--CCCCEEEE
T ss_conf 9999976405699998------------78999999998756984698286999999999857--89798998