HHsearch alignment for GI: 254780821 and conserved domain: PRK04308
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=8.6e-42 Score=277.35 Aligned_cols=301 Identities=21% Similarity=0.280 Sum_probs=206.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429)
T Consensus 111 ~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~--------------~G-N--iG~p~~~~~~~------------------ 155 (445)
T PRK04308 111 KVIAITGSNGKTTVTSLVGYLCIKCGLDTVI--------------AG-N--IGTPVLEAELQ------------------ 155 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCCEEE--------------EE-E--CCCCCHHHHHH------------------
T ss_conf 5799948998377999999999975996299--------------85-0--37521111444------------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444
Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429)
Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429)
T Consensus 156 ----------~~~~~~d~~VlElSSf-ql~~~~~~-~p~iavitNi~~DHLD~h~-s~e~Y~~aK~~if~~~~~~vln~d 222 (445)
T PRK04308 156 ----------REGKKADVWVLELSSF-QLENTESL-RPTAATVLNISEDHLDRYD-DLLDYAHTKAKIFRGDGVQVLNAD 222 (445)
T ss_pred ----------HCCCCCCEEEEEEECC-CCCCCCCC-CCCEEEECCCCHHHHHHHC-CHHHHHHHHHHHCCCCCEEEECCC
T ss_conf ----------3278786799996033-44665543-7638998589856754535-999999999974457977999387
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCC----CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf 717898899998621056652357----6321012585244431033334444443222211111469999875320000
Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYG----DDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLE 260 (429)
Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~ 260 (429)
T Consensus 223 -d~~~~~~-~~----~~~~v~~~~~~~~~d~~~~~~~~~-~~~~~~~l~~~~~l~l~G~HN~~NalAAia~a~~lG--i~ 293 (445)
T PRK04308 223 -DAFCRAM-KR----AGREVKWFSLEHEADFWLERETGR-LKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVG--LP 293 (445)
T ss_pred -CHHHHHH-HH----CCCCEEEEECCCCCCEEEECCCCE-EEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCC--CC
T ss_conf -1999999-86----699569981376563689616637-974681145430256676547988999999999829--98
Q ss_pred HHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCCHH
Q ss_conf 110011222233-665303542287544457874599933-6321579988865433114777712431134-6798989
Q gi|254780821|r 261 KECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGKKYG 337 (429)
Q Consensus 261 ~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dKd~~ 337 (429)
T Consensus 294 ~~~I~~aL~~F~Gl~hR~E~v~~-------~~GV~~iNDSKaTn~~at~~Al~~~~-------~~i~lI~GG~~Kg~d~~ 359 (445)
T PRK04308 294 REALLEHVKTFQGLPHRVEKIGE-------KNGVVFIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFT 359 (445)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEE-------ECCEEEEECCCCCCHHHHHHHHHHCC-------CCEEEEECCCCCCCCHH
T ss_conf 89999998757999986289986-------48988980798888899999998277-------97799976766777869
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9999888638889998422889984212789899999998549978996998999999998603588679999
Q gi|254780821|r 338 RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI 410 (429)
Q Consensus 338 ~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV 410 (429)
T Consensus 360 ~l~~~~~~~~~~v~~~------------G~~~~~i~~~l~~~~~~~~~~~~l~~Av~~a~~~a--~~g~~VLl 418 (445)
T PRK04308 360 PLRDALAGKAKGVFLI------------GVDAPQIRRDLDGCGLNLTDCATLEEAVQTAYAQA--EAGDIVLL 418 (445)
T ss_pred HHHHHHHHHCEEEEEE------------CCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHC--CCCCEEEE
T ss_conf 9999987525699998------------97999999988637985587687999999999748--89898998