HHsearch alignment for GI: 254780821 and conserved domain: PRK04308

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=8.6e-42  Score=277.35  Aligned_cols=301  Identities=21%  Similarity=0.280  Sum_probs=206.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r   25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF  104 (429)
Q Consensus        25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F  104 (429)
T Consensus       111 ~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~--------------~G-N--iG~p~~~~~~~------------------  155 (445)
T PRK04308        111 KVIAITGSNGKTTVTSLVGYLCIKCGLDTVI--------------AG-N--IGTPVLEAELQ------------------  155 (445)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHCCCCEEE--------------EE-E--CCCCCHHHHHH------------------
T ss_conf             5799948998377999999999975996299--------------85-0--37521111444------------------


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             89999999874114462477764447567641356775158986025000000278523445666531137983315444
Q gi|254780821|r  105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ  184 (429)
Q Consensus       105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~  184 (429)
T Consensus       156 ----------~~~~~~d~~VlElSSf-ql~~~~~~-~p~iavitNi~~DHLD~h~-s~e~Y~~aK~~if~~~~~~vln~d  222 (445)
T PRK04308        156 ----------REGKKADVWVLELSSF-QLENTESL-RPTAATVLNISEDHLDRYD-DLLDYAHTKAKIFRGDGVQVLNAD  222 (445)
T ss_pred             ----------HCCCCCCEEEEEEECC-CCCCCCCC-CCCEEEECCCCHHHHHHHC-CHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             ----------3278786799996033-44665543-7638998589856754535-999999999974457977999387


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCC----CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf             717898899998621056652357----6321012585244431033334444443222211111469999875320000
Q gi|254780821|r  185 VYDEVREILVSKAEKMGCPYNVYG----DDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLE  260 (429)
Q Consensus       185 ~~~~~~~~i~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~  260 (429)
T Consensus       223 -d~~~~~~-~~----~~~~v~~~~~~~~~d~~~~~~~~~-~~~~~~~l~~~~~l~l~G~HN~~NalAAia~a~~lG--i~  293 (445)
T PRK04308        223 -DAFCRAM-KR----AGREVKWFSLEHEADFWLERETGR-LKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVG--LP  293 (445)
T ss_pred             -CHHHHHH-HH----CCCCEEEEECCCCCCEEEECCCCE-EEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCC--CC
T ss_conf             -1999999-86----699569981376563689616637-974681145430256676547988999999999829--98


Q ss_pred             HHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCCHH
Q ss_conf             110011222233-665303542287544457874599933-6321579988865433114777712431134-6798989
Q gi|254780821|r  261 KECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGKKYG  337 (429)
Q Consensus       261 ~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dKd~~  337 (429)
T Consensus       294 ~~~I~~aL~~F~Gl~hR~E~v~~-------~~GV~~iNDSKaTn~~at~~Al~~~~-------~~i~lI~GG~~Kg~d~~  359 (445)
T PRK04308        294 REALLEHVKTFQGLPHRVEKIGE-------KNGVVFIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFT  359 (445)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEE-------ECCEEEEECCCCCCHHHHHHHHHHCC-------CCEEEEECCCCCCCCHH
T ss_conf             89999998757999986289986-------48988980798888899999998277-------97799976766777869


Q ss_pred             HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             9999888638889998422889984212789899999998549978996998999999998603588679999
Q gi|254780821|r  338 RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI  410 (429)
Q Consensus       338 ~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV  410 (429)
T Consensus       360 ~l~~~~~~~~~~v~~~------------G~~~~~i~~~l~~~~~~~~~~~~l~~Av~~a~~~a--~~g~~VLl  418 (445)
T PRK04308        360 PLRDALAGKAKGVFLI------------GVDAPQIRRDLDGCGLNLTDCATLEEAVQTAYAQA--EAGDIVLL  418 (445)
T ss_pred             HHHHHHHHHCEEEEEE------------CCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHC--CCCCEEEE
T ss_conf             9999987525699998------------97999999988637985587687999999999748--89898998