HHsearch alignment for GI: 254780821 and conserved domain: PRK04663

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00  E-value=1.1e-40  Score=270.61  Aligned_cols=310  Identities=19%  Similarity=0.254  Sum_probs=203.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf             98399945898479999999999997893514137841101200898884778715588999999999863047767795
Q gi|254780821|r   24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI  103 (429)
Q Consensus        24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~  103 (429)
T Consensus       108 ~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~---------------gGNi--G~p~~~---------------------  149 (438)
T PRK04663        108 KPVIAITGSNGKSTVTDLTGVMAKAAGVKVAV---------------GGNI--GVPALD---------------------  149 (438)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCCCEE---------------EEEC--CCHHHH---------------------
T ss_conf             97899948998289999999999828997068---------------7215--716887---------------------


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             78999999987411446247776444756764135677515898602500000027852344566653113798331544
Q gi|254780821|r  104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGH  183 (429)
Q Consensus       104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~  183 (429)
T Consensus       150 -----------~~~~~~d~~VlElSS-fQLe~~~~~-~p~iavilNIs~DHLD~h~-s~e~Y~~aK~rIf~~~~~~Ivn~  215 (438)
T PRK04663        150 -----------LLEQDAELYVLELSS-FQLETTSSL-KLKAAAFLNLSEDHMDRYQ-GMADYRQAKLRIFDHAELAVVNR  215 (438)
T ss_pred             -----------HHHCCCCEEEEECCC-CCHHHHCCC-CCCCHHHHCCCHHHHHHHC-CHHHHHHHHHHHHCCCCEEEECC
T ss_conf             -----------530469789984451-014340356-8633344068876877736-99999999999853697899865


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             47178988999986210566523576---3210125-8524443103333444444322221111146999987532000
Q gi|254780821|r  184 QVYDEVREILVSKAEKMGCPYNVYGD---DFYAFEK-NKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTL  259 (429)
Q Consensus       184 ~~~~~~~~~i~~~a~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i  259 (429)
T Consensus       216 dd-~~~---~~~~---~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lG--i  286 (438)
T PRK04663        216 DD-KQT---YPDT---ASLQLVTFGFDQQEYGLIEHQGREWLADNGQPVLASNELKLVGKHNVANSLVVLALLDAAG--I  286 (438)
T ss_pred             CH-HHH---HHHH---CCCCEEEEECCCCCCCEEEECCEEEEEECCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCC--C
T ss_conf             35-988---8776---0785799604620165597278699985887766314305664556877999999999839--9


Q ss_pred             HHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CCCCH
Q ss_conf             0110011222233-665303542287544457874599933-63215799888654331147777124311346-79898
Q gi|254780821|r  260 EKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV-EGKKY  336 (429)
Q Consensus       260 ~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~-~dKd~  336 (429)
T Consensus       287 ~~e~I~~aL~~F~glpHRlE~v~~-------~~gv~~iNDSKaTN~~a~~~Al~~~~~-----~~~i~lI~GG~~Kg~d~  354 (438)
T PRK04663        287 DYRKTLDALKSYNGLTHRCQVVAD-------NRGIKWVNDSKATNVASTLAALSGLNL-----EGKLYLLVGGVGKGADF  354 (438)
T ss_pred             CHHHHHHHHHCCCCCCCCEEEEEE-------ECCEEEECCCCCCCHHHHHHHHHHCCC-----CCCEEEEECCCCCCCCH
T ss_conf             978986565335898875289999-------899999747877887899999983677-----78479996576666687


Q ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE---ECC
Q ss_conf             99999888638889998422889984212789899999998549978996998999999998603588679999---497
Q gi|254780821|r  337 GRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI---AGS  413 (429)
Q Consensus       337 ~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV---~GS  413 (429)
T Consensus       355 ~~l~~~~~~~~~~~~~---~G~---------~~~~~~~----~~~~~~~~~~l~~Av~~a~~~a--~~gd~vLlSPacaS  416 (438)
T PRK04663        355 SELKPVLATLNLQLCC---FGE---------DGDQFMP----LHPSARRFETMEDAIESISPQL--KSGDMVMLSPACAS  416 (438)
T ss_pred             HHHHHHHHHCCEEEEE---ECC---------CHHHHHH----HCCCCEECCCHHHHHHHHHHHC--CCCCEEEECCCCCC
T ss_conf             9999998523769999---888---------8999974----3245344067999999999867--79998998974403


Q ss_pred             H------HHHHHHHHHC
Q ss_conf             7------9999999987
Q gi|254780821|r  414 L------YLAGEALREN  424 (429)
Q Consensus       414 ~------ylvge~l~~~  424 (429)
T Consensus       417 fD~F~nyeeRG~~F~~l  433 (438)
T PRK04663        417 FDQFANFMARGDAFAEL  433 (438)
T ss_pred             CCCCCCHHHHHHHHHHH
T ss_conf             00306999999999999