HHsearch alignment for GI: 254780821 and conserved domain: PRK04663
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=1.1e-40 Score=270.61 Aligned_cols=310 Identities=19% Similarity=0.254 Sum_probs=203.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795
Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429)
Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429)
T Consensus 108 ~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~---------------gGNi--G~p~~~--------------------- 149 (438)
T PRK04663 108 KPVIAITGSNGKSTVTDLTGVMAKAAGVKVAV---------------GGNI--GVPALD--------------------- 149 (438)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCCEE---------------EEEC--CCHHHH---------------------
T ss_conf 97899948998289999999999828997068---------------7215--716887---------------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 78999999987411446247776444756764135677515898602500000027852344566653113798331544
Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGH 183 (429)
Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~ 183 (429)
T Consensus 150 -----------~~~~~~d~~VlElSS-fQLe~~~~~-~p~iavilNIs~DHLD~h~-s~e~Y~~aK~rIf~~~~~~Ivn~ 215 (438)
T PRK04663 150 -----------LLEQDAELYVLELSS-FQLETTSSL-KLKAAAFLNLSEDHMDRYQ-GMADYRQAKLRIFDHAELAVVNR 215 (438)
T ss_pred -----------HHHCCCCEEEEECCC-CCHHHHCCC-CCCCHHHHCCCHHHHHHHC-CHHHHHHHHHHHHCCCCEEEECC
T ss_conf -----------530469789984451-014340356-8633344068876877736-99999999999853697899865
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 47178988999986210566523576---3210125-8524443103333444444322221111146999987532000
Q gi|254780821|r 184 QVYDEVREILVSKAEKMGCPYNVYGD---DFYAFEK-NKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTL 259 (429)
Q Consensus 184 ~~~~~~~~~i~~~a~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i 259 (429)
T Consensus 216 dd-~~~---~~~~---~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lG--i 286 (438)
T PRK04663 216 DD-KQT---YPDT---ASLQLVTFGFDQQEYGLIEHQGREWLADNGQPVLASNELKLVGKHNVANSLVVLALLDAAG--I 286 (438)
T ss_pred CH-HHH---HHHH---CCCCEEEEECCCCCCCEEEECCEEEEEECCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCC--C
T ss_conf 35-988---8776---0785799604620165597278699985887766314305664556877999999999839--9
Q ss_pred HHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CCCCH
Q ss_conf 0110011222233-665303542287544457874599933-63215799888654331147777124311346-79898
Q gi|254780821|r 260 EKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV-EGKKY 336 (429)
Q Consensus 260 ~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~-~dKd~ 336 (429)
T Consensus 287 ~~e~I~~aL~~F~glpHRlE~v~~-------~~gv~~iNDSKaTN~~a~~~Al~~~~~-----~~~i~lI~GG~~Kg~d~ 354 (438)
T PRK04663 287 DYRKTLDALKSYNGLTHRCQVVAD-------NRGIKWVNDSKATNVASTLAALSGLNL-----EGKLYLLVGGVGKGADF 354 (438)
T ss_pred CHHHHHHHHHCCCCCCCCEEEEEE-------ECCEEEECCCCCCCHHHHHHHHHHCCC-----CCCEEEEECCCCCCCCH
T ss_conf 978986565335898875289999-------899999747877887899999983677-----78479996576666687
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE---ECC
Q ss_conf 99999888638889998422889984212789899999998549978996998999999998603588679999---497
Q gi|254780821|r 337 GRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI---AGS 413 (429)
Q Consensus 337 ~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV---~GS 413 (429)
T Consensus 355 ~~l~~~~~~~~~~~~~---~G~---------~~~~~~~----~~~~~~~~~~l~~Av~~a~~~a--~~gd~vLlSPacaS 416 (438)
T PRK04663 355 SELKPVLATLNLQLCC---FGE---------DGDQFMP----LHPSARRFETMEDAIESISPQL--KSGDMVMLSPACAS 416 (438)
T ss_pred HHHHHHHHHCCEEEEE---ECC---------CHHHHHH----HCCCCEECCCHHHHHHHHHHHC--CCCCEEEECCCCCC
T ss_conf 9999998523769999---888---------8999974----3245344067999999999867--79998998974403
Q ss_pred H------HHHHHHHHHC
Q ss_conf 7------9999999987
Q gi|254780821|r 414 L------YLAGEALREN 424 (429)
Q Consensus 414 ~------ylvge~l~~~ 424 (429)
T Consensus 417 fD~F~nyeeRG~~F~~l 433 (438)
T PRK04663 417 FDQFANFMARGDAFAEL 433 (438)
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 00306999999999999