HHsearch alignment for GI: 254780821 and conserved domain: PRK11929
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional.
Probab=100.00 E-value=0 Score=394.45 Aligned_cols=357 Identities=23% Similarity=0.264 Sum_probs=253.0
Q ss_pred CCCHHHHHHHHHHC-CCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECC
Q ss_conf 78889999999872-99588359839994589847999999999999789351413784110120089888477871558
Q gi|254780821|r 3 ADSLLKMGYLLEDL-GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVE 81 (429)
Q Consensus 3 ~~~l~r~~~ll~~l-g~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~ 81 (429)
T Consensus 90 ~d~r~al~~la~~fy~~ps~~l-~vigVTGTNGKTTt~~~i~~il~~~g~~~~~i--------------GTl---g~~~~ 151 (953)
T PRK11929 90 ADLRKALGELADEWYGKPSQDL-SVVAVTGTNGKTSCAQWLAQMLTRLGKPCGSI--------------GTL---GARLP 151 (953)
T ss_pred CCHHHHHHHHHHHHHCCCCCCC-CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEE--------------CCC---CEECC
T ss_conf 9899999999999864967588-78999799979999999999998679988998--------------324---54058
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHH-HHHHHHCCCCCHHHHHH---HHH-HHHHHHCCCCCCCEEEEEECCCHHCC
Q ss_conf 89999999998630477677957899999-99874114462477764---447-56764135677515898602500000
Q gi|254780821|r 82 DVELLDVFRRVRRVKSAQNLTIFELSIAT-ALVLFSKYPADCAIIEV---GLG-GSLDATNIIEKVAVSVITSISLDHEK 156 (429)
Q Consensus 82 ~~~~~~~~~~i~~~~~~~~~t~FE~lt~~-a~~~f~~~~~d~~vlE~---GlG-Gr~DaTnvi~~~~vavITnI~~DHle 156 (429)
T Consensus 152 ~~~-----------~~~~~~TTP~~~~l~~~l~~~~~~g~~~~vmEvSSHgL~q~Rv~gi----~fdvaifTNls~DHLD 216 (953)
T PRK11929 152 DGQ-----------SLGGSLTTPDVITLHRLLARMRAAGADAVAMEASSHGLEQGRLDGI----RFAVAGFTNLTRDHLD 216 (953)
T ss_pred CCC-----------CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCC----CCCEEEEECCCHHHHH
T ss_conf 764-----------4678999948999999999999769979999833067764342087----8788999479767866
Q ss_pred CCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCC-----CCCCCEEEEEEC
Q ss_conf 027852344566653113---798331544471789889999862105665235---763210-----125852444310
Q gi|254780821|r 157 ILGNTVSAIAKDKSGIIK---PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVY---GDDFYA-----FEKNKCLVYQDK 225 (429)
Q Consensus 157 ~LG~tle~Ia~eKa~I~k---~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~ 225 (429)
T Consensus 217 yH~-tme~Y~~aK~~LF~~l~~~~~aViN~D-d~~~~~l~-~~~~~~~~~~~~~~~~~ad~~~~~i~~~~~g~~f~l~~~ 293 (953)
T PRK11929 217 YHG-TMEDYEQAKAALFEQWPPLGAAVINAD-DPAGERLL-ASLPAALLTGYALQGSPADVHAYDLQATAHGQVFTLALP 293 (953)
T ss_pred HCC-CHHHHHHHHHHHHHHHHCCCEEEEECC-CHHHHHHH-HHCCCCCEEEEECCCCCCCEEEEEEEECCCCCEEEEEEC
T ss_conf 548-999999999999987410866999798-88899999-871278589993367877489999998289868999978
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHH
Q ss_conf 33334444443222211111469999875320000110011222233-66530354228754445787459993363215
Q gi|254780821|r 226 ISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 (429)
Q Consensus 226 ~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~ 304 (429)
T Consensus 294 ~~-~~~~~~~L~G~fNv~N~laA~a~~~~~g~~~--~~i~~~l~~~~~vpGRmE~v~~~~----~~~~~~viVDYAHTpd 366 (953)
T PRK11929 294 DG-EAQIVTGLLGRHNISNLLLVAGALSKLGWPL--PQIARELAAVSPVDGRLERVGPTA----SAQGPLVVVDYAHTPD 366 (953)
T ss_pred CC-EEEEEECCCCHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHCCCCCCCEEEEECCC----CCCCCEEEEECCCCHH
T ss_conf 92-7999806863124999999999999839999--999998861799888759961566----6789669998678989
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCH---HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH---
Q ss_conf 79988865433114777712431134679898---999998886388899984228899842127898999999985---
Q gi|254780821|r 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKY---GRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKK--- 378 (429)
Q Consensus 305 s~~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~---~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 378 (429)
T Consensus 367 Al~~~L~~lr~~~~-~~~rli~VfGcgGdRD~~KRp~Mg~iA~~~aD~viiT~DNPR~-------Edp~~I~~dI~~g~~ 438 (953)
T PRK11929 367 ALARALTALRPVAE-ANGRLVCVFGCGGNRDKGKRPEMGRIAAELADRVIVTSDNPRD-------EAPEDIIDQILAGIP 438 (953)
T ss_pred HHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCC-------CCHHHHHHHHHHCCC
T ss_conf 99999999997614-6980999989878776103489999999849989986899899-------999999999985656
Q ss_pred CCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 4997899699899999999860358867999949
Q gi|254780821|r 379 LGFQAMACSSMIEALSRVRKINEELPPPLILIAG 412 (429)
Q Consensus 379 ~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~G 412 (429)
T Consensus 439 ~~~~~~~i~dR~~AI~~ai~~a--~~~D~vliaG 470 (953)
T PRK11929 439 AGARALRQSDRALAIMQAIWMA--KPGDVILLAG 470 (953)
T ss_pred CCCCEEEECCHHHHHHHHHHHC--CCCCEEEEEE
T ss_conf 6886699779999999999847--9999899987