HHsearch alignment for GI: 254780821 and conserved domain: PRK11929
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional.
Probab=100.00 E-value=2.7e-44 Score=292.87 Aligned_cols=345 Identities=22% Similarity=0.239 Sum_probs=221.4
Q ss_pred CCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCC---CCEEEEECCCCCEEEEEEEECCCCCCCEE
Q ss_conf 788899999998729958835983999458984799999999999978---93514137841101200898884778715
Q gi|254780821|r 3 ADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSG---LSVHVHTSPHLIRWNERFRLGVKGGRGRL 79 (429)
Q Consensus 3 ~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g---~k~g~~tSPhl~~~~Eri~i~~~~~~g~~ 79 (429)
T Consensus 572 ~Dt~~AL~~lA~~~r-~~~~~-~vIgITGSnGKTTTKeml~~iLs~~~~~~~~v--~~t~g--N~NN------------~ 633 (953)
T PRK11929 572 GDTLAALGRMATAWR-SSFSL-PVIAITGSNGKTTTKEMIAAILAQWQGDDGRV--TATEG--NFNN------------E 633 (953)
T ss_pred CCHHHHHHHHHHHHH-HHCCC-CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEE--EECCC--CCCC------------C
T ss_conf 898999999999999-75799-78999678850789999999998517778438--85567--4378------------6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHHHCCCCCCCEEEEEECCCHHCCC
Q ss_conf 588999999999863047767795789999999874114462477764447--567641356775158986025000000
Q gi|254780821|r 80 VEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG--GSLDATNIIEKVAVSVITSISLDHEKI 157 (429)
Q Consensus 80 i~~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG--Gr~DaTnvi~~~~vavITnI~~DHle~ 157 (429)
T Consensus 634 i-----------------GvPltll~----------l~~~~~~aVlEmGms~~GEI~~L~~i~~PdiaVITNIg~aHLe~ 686 (953)
T PRK11929 634 I-----------------GVPLTLLR----------LRARHRAAVFELGMNHPGEIARLAAIAAPTVALVTNAQREHQEF 686 (953)
T ss_pred C-----------------CCCHHHHC----------CCCCCHHHHHHHCCCCCCHHHHHHCCCCCCEEEEECCHHHHHHH
T ss_conf 6-----------------67178757----------99634657876528962269986062589778874456998766
Q ss_pred CCCCHHHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCCC----CCCCEEEEEECC
Q ss_conf 2785234456665311---379833154447178988999986210566523576----32101----258524443103
Q gi|254780821|r 158 LGNTVSAIAKDKSGII---KPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGD----DFYAF----EKNKCLVYQDKI 226 (429)
Q Consensus 158 LG~tle~Ia~eKa~I~---k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~ 226 (429)
T Consensus 687 fg-s~e~Ia~aK~eIf~~l~~~g~aIlN~D-D~~~-~~~~~~~~~~~i~~fg~~~~~~adi~~~~i~~~~~g~~~~~~~~ 763 (953)
T PRK11929 687 LH-SVEAVARANGALINALPEDGIAVVNGD-DPYA-AIWAKLAGARRVLRFGLSLQPGLDVYAEDIVTQAAGTLCFVVTP 763 (953)
T ss_pred HC-CHHHHHHHHHHHHHCCCCCCEEEEECC-CHHH-HHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCCCEEEEEEEC
T ss_conf 18-999999999999831587979999388-6889-99999845787599985258987689999898689649999978
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCC--CH
Q ss_conf 3334444443222211111469999875320000110011222233-66530354228754445787459993363--21
Q gi|254780821|r 227 SQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGH--NP 303 (429)
Q Consensus 227 ~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AH--Np 303 (429)
T Consensus 764 ~~~~~v~l~l~G~hnv~NaLaAiAva~~lGi~~--~~i~~~L~~~~~~~gR~e~~~~~-------~g-~~iIDDsYNANP 833 (953)
T PRK11929 764 AGSAYVDLPVPGEHNLRNALAAIAIGLAAGAPL--HQIIAALEGFQAVKGRMQRRQLS-------DG-TVIIDDTYNANP 833 (953)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHCCCCCCCCCEEEEEC-------CC-EEEEEECCCCCH
T ss_conf 956999956897999999999999999939999--99999986699999987899957-------99-799997848889
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCC------CCHHHHHHHHHHH-CCEEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 579988865433114777712431134679------8989999988863-888999842288998421278989999999
Q gi|254780821|r 304 NAGLVVSKEISKLKGSSNKPFYLVIGMVEG------KKYGRYLEAFVEL-SPIVLSVSLICRGRERQSISITPKVLMQEA 376 (429)
Q Consensus 304 ~s~~~l~~~l~~l~~~~~~~i~~I~G~~~d------Kd~~~~l~~l~~~-~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~ 376 (429)
T Consensus 834 ~Sm~aAl~~L~~~~---~~~kiaVLGdM~ELG~~s~~~H~~ig~~~~~~~id~v~~vG------------~~~~~~~~~~ 898 (953)
T PRK11929 834 DSMRAAIDVLARLP---GPKRALVLGDMLELGDNGPAMHREVGDYAREHSIDALITLG------------EASRDAAHAF 898 (953)
T ss_pred HHHHHHHHHHHCCC---CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC------------HHHHHHHHHC
T ss_conf 99999999985287---99869998485002457899999999999975999999986------------5799998656
Q ss_pred HHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEECCH----HHHHHHHHHC
Q ss_conf 85499789969989999999986035886799994977----9999999987
Q gi|254780821|r 377 KKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSL----YLAGEALREN 424 (429)
Q Consensus 377 ~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~----ylvge~l~~~ 424 (429)
T Consensus 899 ~~--~~~~~~~~~~~l~~~L~~~l--~~~d~VLVKGSR~m~lE~iV~~l~~~ 946 (953)
T PRK11929 899 GK--AARACFASVDEIIAALRGLL--PSSDIVLIKGSRFMRLERVVTAFSTN 946 (953)
T ss_pred CC--CCEEEECCHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 84--65788399999999998558--99999999715604699999999729