HHsearch alignment for GI: 254780821 and conserved domain: PRK11930
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional.
Probab=100.00 E-value=1.3e-40 Score=270.17 Aligned_cols=340 Identities=17% Similarity=0.224 Sum_probs=215.9
Q ss_pred CCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCH
Q ss_conf 78889999999872995883598399945898479999999999997893514137841101200898884778715588
Q gi|254780821|r 3 ADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVED 82 (429)
Q Consensus 3 ~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~ 82 (429)
T Consensus 91 ~Dtl~ALq~LA~~~R~-~~~~-~VIgITGSnGKTttKe~L~~iLs~~~-~v--~~T~g--n~------N------n~I-- 149 (824)
T PRK11930 91 KNPLKALQKLAAYYRK-QFDI-PIIGITGSNGKTIVKEWLYQLLSPDY-NI--VRSPR--SY------N------SQI-- 149 (824)
T ss_pred CCHHHHHHHHHHHHHH-HCCC-CEEEEECCCCHHHHHHHHHHHHHCCC-CE--ECCCC--CC------C------CCC--
T ss_conf 9899999999999997-4899-89999499978999999999974578-68--52887--66------8------742--
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHHHCCCCCCCEEEEEECCCHHCCCCCC
Q ss_conf 999999999863047767795789999999874114462477764447--567641356775158986025000000278
Q gi|254780821|r 83 VELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG--GSLDATNIIEKVAVSVITSISLDHEKILGN 160 (429)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG--Gr~DaTnvi~~~~vavITnI~~DHle~LG~ 160 (429)
T Consensus 150 ---------------GvPLTll----------~l~~~~e~aVlEmG~s~~GEI~~L~~i~~P~igVITNIg~aHle~fg- 203 (824)
T PRK11930 150 ---------------GVPLSVW----------QMNEEHELGIFEAGISTMGEMEALQKIIKPTIGILTNIGGAHQENFF- 203 (824)
T ss_pred ---------------CHHHHHH----------CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHCC-
T ss_conf ---------------5899986----------49845808999907898146999953527999999075098766458-
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCC---CCCCC--EEEEEECCCCCCC
Q ss_conf 5234456665311379833154447178988999986210566523576----3210---12585--2444310333344
Q gi|254780821|r 161 TVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGD----DFYA---FEKNK--CLVYQDKISQTNL 231 (429)
Q Consensus 161 tle~Ia~eKa~I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~----~~~~---~~~~~--~~~~~~~~~~~~~ 231 (429)
T Consensus 204 S~e~ia~eK~eL~~~~~~~i~n~d-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 280 (824)
T PRK11930 204 DIQEKCMEKLKLFKDCDVIIYNGD-NEEISNCIHKSNLT-RREIAWSRTDSEAPLYISRSEKKEFHTHIQYRYL-GMDRY 280 (824)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECC-CHHHHHHHHHHCCC-CCEEEEECCCCCCCEEEEEEEECCCCEEEEEEEC-CEEEE
T ss_conf 999999999997621781799468-57899999763367-6289983478665346665430588169999968-90699
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCC--CHHHHHH
Q ss_conf 44443222211111469999875320000110011222233-66530354228754445787459993363--2157998
Q gi|254780821|r 232 TVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGH--NPNAGLV 308 (429)
Q Consensus 232 ~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AH--Np~s~~~ 308 (429)
T Consensus 281 ~~lp~~G~h~v~NAlaA~ava~~lGv~~--~~i~~~L~~~~p~~~Rlev~~g-------~~g~-~iIdDsYNAnP~Sm~a 350 (824)
T PRK11930 281 FQIPFIDDASIENSIHCLAVALYLMYSA--DQITKRFARLEPVEMRLEVKEG-------INNC-TLINDSYNSDLASLDI 350 (824)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHCCCCCCEEEEEEC-------CCCC-EEEECCCCCCHHHHHH
T ss_conf 9936998899999999999999839999--9999998418965451379997-------9980-9995666699899999
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCC--CCCHHHHHHHHHHH-----CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC-C
Q ss_conf 886543311477771243113467--98989999988863-----888999842288998421278989999999854-9
Q gi|254780821|r 309 VSKEISKLKGSSNKPFYLVIGMVE--GKKYGRYLEAFVEL-----SPIVLSVSLICRGRERQSISITPKVLMQEAKKL-G 380 (429)
Q Consensus 309 l~~~l~~l~~~~~~~i~~I~G~~~--dKd~~~~l~~l~~~-----~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 380 (429)
T Consensus 351 ALdtL~~~~~--~~RrI~ILgDMlElG~~~~~ly~~Vg~l~~~~~i~~ligi--------------G-~~~~~~~~~~~~ 413 (824)
T PRK11930 351 ALDFLERRKQ--SKKKTLILSDILQSGQSPEELYRKVAQLISSAKINRVIGI--------------G-EEISSEAKKFEG 413 (824)
T ss_pred HHHHHHHCCC--CCCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCEEEEE--------------C-HHHHHHHHHCCC
T ss_conf 9999974035--7856999877443287607899999999997688789981--------------8-899999986457
Q ss_pred CCEEEECCHHHHHHHHHHHCCCCCCCEEEEECC----HHHHHHHH
Q ss_conf 978996998999999998603588679999497----79999999
Q gi|254780821|r 381 FQAMACSSMIEALSRVRKINEELPPPLILIAGS----LYLAGEAL 421 (429)
Q Consensus 381 ~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS----~ylvge~l 421 (429)
T Consensus 414 ~~~~~~~~~~~~l~~~~~--~~~~~~~iLikGar~~~~e~i~~~l 456 (824)
T PRK11930 414 IEKYFFKDTEAFLASLEK--KKFSNELILIKGSRKFQFEQISERL 456 (824)
T ss_pred CCEEEECCHHHHHHCCCC--CCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 765895689999742741--1368977998055456689999999