HHsearch alignment for GI: 254780821 and conserved domain: TIGR01081
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; InterPro: IPR005757 The tripeptide L-ananyl-gamma-D-glutamyl-meso-diaminopimelic acid is efficiently re-cycled during the formation of bacterial cell wall murein. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase is an essential enzyme in this process which links the tripeptide to UDP-N-acetylmuramate.; GO: 0016874 ligase activity, 0007047 cell wall organization and biogenesis.
Probab=99.96 E-value=8.5e-28 Score=190.87 Aligned_cols=322 Identities=20% Similarity=0.207 Sum_probs=198.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429)
T Consensus 104 WVlaV~GTHGKTTT~~M~~WvLE~~G~~pGF-------------liGGv~gNFg-vSA--------rLg~~pr~dp---- 157 (459)
T TIGR01081 104 WVLAVAGTHGKTTTASMLAWVLEQCGLKPGF-------------LIGGVPGNFG-VSA--------RLGETPRQDP---- 157 (459)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCCCC-------------EECCCCCCCC-EEE--------ECCCCCCCCC----
T ss_conf 2789507886046889999999863798872-------------6734245342-142--------0687756674----
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-------HCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHH---HHHHCC
Q ss_conf 8999999987411446247776444756764-------135677515898602500000027852344566---653113
Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDA-------TNIIEKVAVSVITSISLDHEKILGNTVSAIAKD---KSGIIK 174 (429)
Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~Da-------Tnvi~~~~vavITnI~~DHle~LG~tle~Ia~e---Ka~I~k 174 (429)
T Consensus 158 ------------~~~S~fFviEAD---EYD~AFFDKRSKFVHY~PRTlvlNNleFDHADIF-ddL~AI~~QFHhlvR~vP 221 (459)
T TIGR01081 158 ------------NSQSPFFVIEAD---EYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIF-DDLKAIQRQFHHLVRTVP 221 (459)
T ss_pred ------------CCCCCEEEEECC---CCCCCCCCCCCCEEECCCCEEEEECCCCCHHHHH-HHHHHHHHCCCEEEEEEC
T ss_conf ------------546875799535---6565100254331202760014515554445578-768998740306889646
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC--CCCCC---CCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 798331544471789889999862105665235763--21012---5852444310333344444432222111114699
Q gi|254780821|r 175 PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDD--FYAFE---KNKCLVYQDKISQTNLTVLGLVGEHQYINAATAI 249 (429)
Q Consensus 175 ~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Ai 249 (429)
T Consensus 222 ~~G~i~~~-~~~~~l~~~l~~---GCWs~~e~~G~~~~W~A~~~~~D~S~f~Vll~G~~vg~VkW~lvG~HN~~NaL~aI 297 (459)
T TIGR01081 222 GEGLILAP-ERDQSLKDTLAK---GCWSEQEFLGEQGEWQAEKITADASEFEVLLDGEKVGEVKWSLVGEHNMHNALMAI 297 (459)
T ss_pred CCCEEECC-CHHHHHHHHHHH---CCCCCHHCCCCCCCHHHHHHCCCCHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHH
T ss_conf 88648435-014689999860---68720112467775057654045100022017843677653330460013589999
Q ss_pred HHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 99875320000110011222233-66530354228754445787459993363215799888654331147777124311
Q gi|254780821|r 250 CAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVI 328 (429)
Q Consensus 250 aa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~ 328 (429)
T Consensus 298 AAArHvGV~~~--~Ac~ALG~F~N~kRRlE~kG-------~~Ng~TVYDDFAHHP~AI~~Tl~~LR~kVG-G~~rIlAVL 367 (459)
T TIGR01081 298 AAARHVGVAIE--DACEALGSFVNAKRRLELKG-------EANGVTVYDDFAHHPTAIEATLAALRDKVG-GGARILAVL 367 (459)
T ss_pred HHHHCCCCCHH--HHHHHHCCCCCCCEEEEEEE-------EEEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEE
T ss_conf 87421676878--99987032001200156721-------131378732766786899999999875239-970699987
Q ss_pred C----CCC-CCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCC
Q ss_conf 3----467-98989999988863888999842288998421278989999999854997899699899999999860358
Q gi|254780821|r 329 G----MVE-GKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEEL 403 (429)
Q Consensus 329 G----~~~-dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~ 403 (429)
T Consensus 368 EPRSnTMKlG~~K~~-la~sL~~AD~Vf~~~-------p~---~~~W~V~e~~~~~~~p~~~~~~~D~~v~~ivk--~A~ 434 (459)
T TIGR01081 368 EPRSNTMKLGVHKDD-LAPSLGRADEVFLLQ-------PE---QIPWEVAEVAEQCVQPANVSADLDELVAMIVK--EAQ 434 (459)
T ss_pred CCCCCCCCCCCCHHH-HHHHHHHCCEEEEEC-------CC---CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--HCC
T ss_conf 787441003432556-667666003565316-------89---88705999998602402110107899999996--058
Q ss_pred CCCEEEEE--CCHH
Q ss_conf 86799994--9779
Q gi|254780821|r 404 PPPLILIA--GSLY 415 (429)
Q Consensus 404 ~~d~VLV~--GS~y 415 (429)
T Consensus 435 ~gD~ILVMSNGgFg 448 (459)
T TIGR01081 435 PGDHILVMSNGGFG 448 (459)
T ss_pred CCCEEEEEECCCCC
T ss_conf 88758997468864