HHsearch alignment for GI: 254780821 and conserved domain: pfam08245
>pfam08245 Mur_ligase_M Mur ligase middle domain.
Probab=99.96 E-value=8.2e-29 Score=197.16 Aligned_cols=174 Identities=27% Similarity=0.299 Sum_probs=116.3
Q ss_pred EECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 94589847999999999999789351413784110120089888477871558899999999986304776779578999
Q gi|254780821|r 29 IGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSI 108 (429)
Q Consensus 29 VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~FE~lt 108 (429)
T Consensus 1 VTGT~GKTTt~~ml~~iL~~~g~~~~~~--------------g------~~~~~ig~----------------------- 37 (188)
T pfam08245 1 ITGTNGKTTTTELIAALLSAAGGVVGTG--------------G------NTNNAIGL----------------------- 37 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEE--------------C------CCCCHHHH-----------------------
T ss_conf 9375868999999999998389989983--------------8------84745779-----------------------
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHH--HCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCCCCC
Q ss_conf 999987411446247776444756764--135677515898602500000027852344566653113---798331544
Q gi|254780821|r 109 ATALVLFSKYPADCAIIEVGLGGSLDA--TNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVVIGH 183 (429)
Q Consensus 109 ~~a~~~f~~~~~d~~vlE~GlGGr~Da--Tnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v~~~ 183 (429)
T Consensus 38 ~~~~~~~~~~~~~~~V~E~~~~~~~~~~l~~-~~~P~iaviTNi~~DHld~~~-s~e~~~~~K~~i~~~~~~~g~~v~n~ 115 (188)
T pfam08245 38 PLLLALMERKGADYAVLELSSFGLGEGRLEG-LAKPDIAVITNISPDHLDYHG-TMENYAAAKAEIFEGLPEDGIAVINA 115 (188)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHCC-CCCCCEEEEECCHHHHHHHHC-CHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 9999766646996899983277710765527-778999999457655646621-79999999999997299999999989
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCC----C-----CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 4717898899998621056652357632----1-----0125852444310333344444432222111114699998
Q gi|254780821|r 184 QVYDEVREILVSKAEKMGCPYNVYGDDF----Y-----AFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAV 252 (429)
Q Consensus 184 ~~~~~~~~~i~~~a~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~ 252 (429)
T Consensus 116 D-d~~~~~~~----~~~~~~~~t~g~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~l~G~HNv~NalaAia~A 188 (188)
T pfam08245 116 D-DPELAKRL----KNAGAKVITFGLENEADDRAANIYVSSEGGKIVLFTVPGGELEISLPLPGRHNVYNALAALAAA 188 (188)
T ss_pred C-CHHHHHHH----HHCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 8-88899999----8669846998568765604467899589968999962993899998866399999999999959