HHsearch results for GI: 254780821 and protein with PDBid: 1e8c_A
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=0 Score=331.30 Aligned_cols=356 Identities=17% Similarity=0.126 Sum_probs=242.6
Q ss_pred CCCHHHHHHHHHH-CCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECC
Q ss_conf 7888999999987-299588359839994589847999999999999789351413784110120089888477871558
Q gi|254780821|r 3 ADSLLKMGYLLED-LGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVE 81 (429)
Q Consensus 3 ~~~l~r~~~ll~~-lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~ 81 (429)
+|+++.|..|..+ +++|+.++ ++|+||||||||||+.|++++|++.|++++.++|+......+.+..+
T Consensus 87 ~d~~~aL~~la~~~~~~~~~~~-~vIgITGSnGKTTT~~~l~~iL~~~~~~~~~~g~~~~~~~~~~~~~~---------- 155 (498)
T 1e8c_A 87 SQLNERLSALAGRFYHEPSDNL-RLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTE---------- 155 (498)
T ss_dssp TTHHHHHHHHHHHHTTCGGGSS-EEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCS----------
T ss_pred CCHHHHHHHHHHHHHCCCCCCC-CEEEEECCCCCCCEEECCHHHHHHCCCCCEECCCEECCCCCCCCCCC----------
T ss_conf 9999999999999855733367-18999789998000646000455437530002540013475224557----------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCC
Q ss_conf 89999999998630477677957899999998741144624777644475676413567751589860250000002785
Q gi|254780821|r 82 DVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNT 161 (429)
Q Consensus 82 ~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~t 161 (429)
......+..++ .|..+.+++++++++|+...|..+..--+-+|+++|||||+.||++++| +
T Consensus 156 ----------------~~~~~~~~~~~--~l~~~~~~~~~~~~~e~s~~g~~~~~~~~~~p~iaviTNI~~dHl~~~g-s 216 (498)
T 1e8c_A 156 ----------------NTTGSAVDVQH--ELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHG-D 216 (498)
T ss_dssp ----------------SSSCCHHHHHH--HHHHHHHTTCCEEEEECCHHHHHTTTTTTCBCSEEEECCCCSCCHHHHS-S
T ss_pred ----------------CCCCCHHHHHH--HHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCEEEEECCCHHHCCCCC-C
T ss_conf ----------------87873567899--9999885699299990698364556407688888999489778767568-8
Q ss_pred HHHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-------CCCCCC-----CCCCCEEEEEECCC
Q ss_conf 2344566653113--798331544471789889999862105665235-------763210-----12585244431033
Q gi|254780821|r 162 VSAIAKDKSGIIK--PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVY-------GDDFYA-----FEKNKCLVYQDKIS 227 (429)
Q Consensus 162 le~Ia~eKa~I~k--~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~-------~~~~~~-----~~~~~~~~~~~~~~ 227 (429)
++.++.+|..++. +...+|++.+ ++....+. ++..+........ +.++.. ......+.+.. ..
T Consensus 217 ~e~~~~aK~~i~~~~~~g~~vln~D-d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 293 (498)
T 1e8c_A 217 MEHYEAAKWLLYSEHHCGQAIINAD-DEVGRRWL-AKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSS-SW 293 (498)
T ss_dssp HHHHHHHHHHHHHTSBCCEEEEETT-SHHHHHHH-TTCTTCEEEESSSCCCTTTCSEEEEEEEEEECSSCEEEEEEE-TT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHH-HHCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEECC-CC
T ss_conf 3676778888653036772899358-67887777-650462588631456754334200002465226652011004-67
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHH
Q ss_conf 334444443222211111469999875320000110011222233-6653035422875444578745999336321579
Q gi|254780821|r 228 QTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAG 306 (429)
Q Consensus 228 ~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~ 306 (429)
....+.++++|.||++|+++|++++..+|.++ +.|.++++++. .+||||.+.. .++..+++||+|||+|+
T Consensus 294 ~~~~i~l~l~G~hnv~NalaAia~a~~lg~~~--~~i~~~l~~~~~~~gR~e~~~~-------~~~~~iidDy~~np~s~ 364 (498)
T 1e8c_A 294 GDGEIESHLMGAFNVSNLLLALATLLALGYPL--ADLLKTAARLQPVCGRMEVFTA-------PGKPTVVVDYAHTPDAL 364 (498)
T ss_dssp CCEEEEECSCSHHHHHHHHHHHHHHHHTTCCH--HHHHHHGGGCCCCTTSSEEECC-------TTSCEEEEECCCSHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHCCCCCCCEEEEEE-------CCCEEEEEECCCCHHHH
T ss_conf 64368875127379999999999997622125--8999999745898997289993-------89549999427992999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCC--HH-HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC---
Q ss_conf 98886543311477771243113467989--89-9999888638889998422889984212789899999998549---
Q gi|254780821|r 307 LVVSKEISKLKGSSNKPFYLVIGMVEGKK--YG-RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG--- 380 (429)
Q Consensus 307 ~~l~~~l~~l~~~~~~~i~~I~G~~~dKd--~~-~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 380 (429)
+++++.+.... .+|+++|+|++++++ .. .+.+.....+|.++.+...++ ...+..+.+.+.+..
T Consensus 365 ~a~l~~l~~~~---~~rii~v~g~~g~~~~~~~~~~~~~a~~~~d~vilt~~~~~-------~e~~~~i~~~~~~~~~~~ 434 (498)
T 1e8c_A 365 EKALQAARLHC---AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPR-------TEEPRAIINDILAGMLDA 434 (498)
T ss_dssp HHHHHHHHHTC---SSCEEEEECCCSSSCSTHHHHHHHHHHHHCSEEEECCSCCB-------TSCHHHHHHHHHTTSSCG
T ss_pred HHHHHHHHHHC---CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCC-------CCCHHHHHHHHHHCCCCC
T ss_conf 99999988656---99889998876666521558999999855999999987878-------779899999998567677
Q ss_pred CCEEEECCHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 97899699899999999860358867999949
Q gi|254780821|r 381 FQAMACSSMIEALSRVRKINEELPPPLILIAG 412 (429)
Q Consensus 381 ~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~G 412 (429)
.++..++++++|++.+.+.+ +++|+|||+|
T Consensus 435 ~~~~~~~d~~eAi~~a~~~a--~~gDvVLi~G 464 (498)
T 1e8c_A 435 GHAKVMEGRAEAVTCAVMQA--KENDVVLVAG 464 (498)
T ss_dssp GGSEECSCHHHHHHHHHHHS--CTTCEEEEES
T ss_pred CCEEEECCHHHHHHHHHHHC--CCCCEEEEEC
T ss_conf 88799689999999999848--9989999947