HHsearch results for GI: 254780821 and protein with PDBid: 1gg4_A
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=2.3e-43 Score=285.69 Aligned_cols=344 Identities=19% Similarity=0.179 Sum_probs=219.5
Q ss_pred CCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCH
Q ss_conf 78889999999872995883598399945898479999999999997893514137841101200898884778715588
Q gi|254780821|r 3 ADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVED 82 (429)
Q Consensus 3 ~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~ 82 (429)
+|+..-|.+|...+- ++.+. ++|+||||||||||+.|++++|+..|.+++...+ .+..+..
T Consensus 81 ~d~~~al~~la~~~~-~~~~~-~vi~ITGT~GKTTt~~~l~~il~~~g~~~~~~~~-----------------~~~~ig~ 141 (452)
T 1gg4_A 81 KDTRLAFGELAAWVR-QQVPA-RVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN-----------------LNNDIGV 141 (452)
T ss_dssp SCHHHHHHHHHHHHH-HHSCC-EEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTT-----------------CCSTTHH
T ss_pred CCHHHHHHHHHHHHH-CCCCC-CEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC-----------------CCCCCCC
T ss_conf 988999999999987-07992-4699971367404456788777765214302357-----------------7887375
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHH-HHHCCCCCCCEEEEEECCCHHCCCCC
Q ss_conf 999999999863047767795789999999874114462477764447--567-64135677515898602500000027
Q gi|254780821|r 83 VELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG--GSL-DATNIIEKVAVSVITSISLDHEKILG 159 (429)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG--Gr~-DaTnvi~~~~vavITnI~~DHle~LG 159 (429)
.. .......+.|++|+|+|.- |.. ..++.+ +|+++|||||++||+|++|
T Consensus 142 ~~---------------------------~~~~~~~~~~~~v~E~~~~~~~~~~~~~~~~-~pdiaviTNI~~dHld~~~ 193 (452)
T 1gg4_A 142 PM---------------------------TLLRLTPEYDYAVIELGANHQGEIAWTVSLT-RPEAALVNNLAAAHLEGFG 193 (452)
T ss_dssp HH---------------------------HHTTCCTTCSEEEEECCCSSSSHHHHHHHHH-CCSEEEECCCC--------
T ss_pred HH---------------------------HHHHCCCCCCEEEEEECCCCCHHHHHHHCCC-CCCEEEEEEECHHHCCCCC
T ss_conf 46---------------------------6643025557289995288660677662456-8878999544055415656
Q ss_pred CCHHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCCC-----CCCCEEEEEECCCC
Q ss_conf 852344566653113---798331544471789889999862105665235---7632101-----25852444310333
Q gi|254780821|r 160 NTVSAIAKDKSGIIK---PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVY---GDDFYAF-----EKNKCLVYQDKISQ 228 (429)
Q Consensus 160 ~tle~Ia~eKa~I~k---~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~ 228 (429)
|+|+++.+|+.+++ ++..++++.++ +......... .......+.. ..|+... ..+..+.......
T Consensus 194 -s~e~y~~aK~~lf~~l~~~~~~i~n~Dd-~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~f~l~~~~~- 269 (452)
T 1gg4_A 194 -SLAGVAKAKGEIFSGLPENGIAIMNADN-NDWLNWQSVI-GSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTG- 269 (452)
T ss_dssp -CHHHHHHHHHGGGGGCCTTCEEEEETTB-CCHHHHHHHH-TTSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTE-
T ss_pred -CHHHHHHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHH-HCCCCEEECCCCCCCCEEEEEEEECCCCCEEEEEECCC-
T ss_conf -2899999999998544425763236787-6888998875-04663154466657756777437707971899995461-
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEE-CCCCHHHH
Q ss_conf 34444443222211111469999875320000110011222233-66530354228754445787459993-36321579
Q gi|254780821|r 229 TNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWID-GGHNPNAG 306 (429)
Q Consensus 229 ~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD-~AHNp~s~ 306 (429)
.....++++|+||++|+++|++++..+|+ +.+.|.++|.+++ .|||||.+... ++..+|.| |+|||+|+
T Consensus 270 ~~~~~~~l~G~hnv~NalaAia~~~~lg~--~~~~i~~~l~~~~~v~~R~~~~~~~-------~~~~~idD~y~~np~s~ 340 (452)
T 1gg4_A 270 SVDVLLPLPGRHNIANALAAAALSMSVGA--TLDAIKAGLANLKAVPGRLFPIQLA-------ENQLLLDDSYNANVGSM 340 (452)
T ss_dssp EEEEEECSSSTHHHHHHHHHHHHHHHTTC--CHHHHHHHHTTCCCCTTSSEEEEEE-------TTEEEEECCSCCCHHHH
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCC--CHHHHHHHHHHCCCCCCHHEEEEEC-------CCCEEEEECCCCCHHHH
T ss_conf 48999725773211408999866655499--8999999987445998311589842-------89579982476897999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCC---CCC---HHHHHHHHHHH-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 98886543311477771243113467---989---89999988863-888999842288998421278989999999854
Q gi|254780821|r 307 LVVSKEISKLKGSSNKPFYLVIGMVE---GKK---YGRYLEAFVEL-SPIVLSVSLICRGRERQSISITPKVLMQEAKKL 379 (429)
Q Consensus 307 ~~l~~~l~~l~~~~~~~i~~I~G~~~---dKd---~~~~l~~l~~~-~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (429)
+++++.+++.. . +.++|+|.+. +++ +.++.+.+... .|.++++- ..++.+.+ .
T Consensus 341 ~a~l~~l~~~~---~-~ki~i~g~~~elG~~~~~~~~~i~~~~~~~~~d~vi~~G------------~~~~~i~~----~ 400 (452)
T 1gg4_A 341 TAAVQVLAEMP---G-YRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVG------------KQSHAIST----A 400 (452)
T ss_dssp HHHHHHHHHSS---S-EEEEEECCCCCCTTHHHHHHHHHHHHHHHHTCSEEEEES------------SSTHHHHH----H
T ss_pred HHHHHHHHHCC---C-CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC------------CCHHHHHH----H
T ss_conf 99999998668---9-839999976878864799999999999857999999978------------28899986----4
Q ss_pred CCCEEEECCHHHHHHHHHHHCCCCCCCEEEEECCH----HHHHHHHHHCCC
Q ss_conf 99789969989999999986035886799994977----999999998797
Q gi|254780821|r 380 GFQAMACSSMIEALSRVRKINEELPPPLILIAGSL----YLAGEALRENGV 426 (429)
Q Consensus 380 ~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~----ylvge~l~~~g~ 426 (429)
......+++++++++.+.+.......++||++||. .-+-+.|++++.
T Consensus 401 ~~~~~~~~~~~~~i~~l~~~~~~~d~~~iL~KGSr~~~le~~v~~L~~~~~ 451 (452)
T 1gg4_A 401 SGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENGT 451 (452)
T ss_dssp TTSCEEESSHHHHHHHHHHHHHHCSSEEEEEECCGGGTTHHHHHHHC----
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf 788706389999999999853369956999914185159999999986289