HHsearch results for GI: 254780821 and protein with PDBid: 1ls1_A
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A 2ng1_A*
Probab=90.49 E-value=0.38 Score=24.87 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=13.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 54447178988999986210566523
Q gi|254780821|r 181 IGHQVYDEVREILVSKAEKMGCPYNV 206 (429)
Q Consensus 181 ~~~~~~~~~~~~i~~~a~~~~~~~~~ 206 (429)
..+.......+.++..+...+++++.
T Consensus 133 ~~Dt~R~~A~eQL~~~a~~~~v~~~~ 158 (295)
T 1ls1_A 133 AADTQRPAAREQLRLLGEKVGVPVLE 158 (295)
T ss_dssp ECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred ECCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 41455533899999999864963895