HHsearch results for GI: 254780821 and protein with PDBid: 2am1_A

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A*
Probab=100.00  E-value=0  Score=303.92  Aligned_cols=335  Identities=17%  Similarity=0.179  Sum_probs=210.4

Q ss_pred             CCCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECC
Q ss_conf             77888999999987299588359839994589847999999999999789351413784110120089888477871558
Q gi|254780821|r    2 AADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVE   81 (429)
Q Consensus         2 ~~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~   81 (429)
                      .+|.+.-+.+|.+++ .|+.+. ++|+||||||||||++|++++|+..|.+++..              ++.   +..+.
T Consensus        80 V~d~~~al~~la~~~-~~~~~~-~vIgVTGTnGKTTt~~~l~~iL~~~~~~~~~~--------------gn~---~~~~g  140 (454)
T 2am1_A           80 VDDVLTAFQSLASYY-LEKTTV-DVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQ--------------GNY---NNEIG  140 (454)
T ss_dssp             CSCHHHHHHHHHHHH-HHHHCC-EEEEEECCCSSSCHHHHHHHHHTTTSCEEECC--------------TTC---CSTTH
T ss_pred             ECCHHHHHHHHHHHH-HHCCCC-CEEEEECCCCCCCEEHHHHHHHHHHCCCEECC--------------CCC---CCCCC
T ss_conf             898999999999999-708898-58999425887732027899877616733316--------------876---87767


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHH-HCCCCCCCEEEEEECCCHHCCCC
Q ss_conf             8999999999863047767795789999999874114462477764447--56764-13567751589860250000002
Q gi|254780821|r   82 DVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG--GSLDA-TNIIEKVAVSVITSISLDHEKIL  158 (429)
Q Consensus        82 ~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG--Gr~Da-Tnvi~~~~vavITnI~~DHle~L  158 (429)
                         ..                    ++    ..-...+.+++|+|+|..  |..+. +. +-+|+++|||||++||+|++
T Consensus       141 ---~~--------------------~~----~~~~~~~~~~~v~E~~~~~~~~~~~l~~-~~~p~iaviTNI~~dHld~~  192 (454)
T 2am1_A          141 ---LP--------------------YT----VLHMPEGTEKLVLEMGQDHLGDIHLLSE-LARPKTAIVTLVGEAHLAFF  192 (454)
T ss_dssp             ---HH--------------------HH----HHTCCTTCCEEEEECCCSSTTHHHHHHH-HHCCSEEEECCCCCSSCTTC
T ss_pred             ---CH--------------------HH----HHHCCCCHHHHHHHHHCCCCHHHHHHHC-CCCCCEEEEECCCHHHHHHH
T ss_conf             ---37--------------------88----8734221036788860354213788725-67996899908866765541


Q ss_pred             CCCHHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC--CCCCCCCC---CCCCCEEEEEECCCCCC
Q ss_conf             7852344566653113---7983315444717898899998621056652--35763210---12585244431033334
Q gi|254780821|r  159 GNTVSAIAKDKSGIIK---PGCPVVIGHQVYDEVREILVSKAEKMGCPYN--VYGDDFYA---FEKNKCLVYQDKISQTN  230 (429)
Q Consensus       159 G~tle~Ia~eKa~I~k---~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~  230 (429)
                      | |+|+|+.+|+.|++   ++..++.++ + +.....     ........  ..+.+...   ........+.... ...
T Consensus       193 ~-s~e~y~~~K~~lf~~~~~~~~vi~~d-d-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  263 (454)
T 2am1_A          193 K-DRSEIAKGKMQIADGMASGSLLLAPA-D-PIVEDY-----LPIDKKVVRFGQGAELEITDLVERKDSLTFKANF-LEQ  263 (454)
T ss_dssp             C-CHHHHHHHHGGGGTTCCTTCEEEEES-C-GGGGGG-----CCSSSEEEEESTTSSBCEEEEEECSSCEEEEETT-CSS
T ss_pred             C-CHHHHHHHHHHHHHCCCCCCCEECCC-C-HHHHHH-----HHHCCCCCCCCCCCCEEHHHHHHCCCCCCCCCCC-CCC
T ss_conf             0-06899998888873467545220267-7-899998-----7530233200456420013322034554212454-323


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEE-ECCCCHHHHHH
Q ss_conf             444443222211111469999875320000110011222233-6653035422875444578745999-33632157998
Q gi|254780821|r  231 LTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWI-DGGHNPNAGLV  308 (429)
Q Consensus       231 ~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~vii-D~AHNp~s~~~  308 (429)
                      ...++++|.||++|+++|++++..+|+  +.+.|.++|.++. .|||||++..       .++..++. ||||||+|+++
T Consensus       264 ~~~~~~~G~~nv~N~laAia~~~~lg~--~~~~i~~~l~~~~~~~~R~e~~~~-------~~~~~iidDsya~nP~s~~~  334 (454)
T 2am1_A          264 ALDLPVTGKYNATNAMIASYVALQEGV--SEEQIRLAFQHLELTRNRTEWKKA-------ANGADILSDVYNANPTAMKL  334 (454)
T ss_dssp             EEEESSCCHHHHHHHHHHHHHHHHTTC--CHHHHHHHGGGCCCCCCCSCEECC-------TTTCEEEEECSCCSHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCC--CHHHEEECCCCCCCCCCCCEEEEC-------CCCCEEEEEECCCCHHHHHH
T ss_conf             433355667899999999999987335--312212001245665530016873-------79926865623699999999


Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCC--CCHHHHHHHHH-----HHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC-C
Q ss_conf             8865433114777712431134679--89899999888-----63888999842288998421278989999999854-9
Q gi|254780821|r  309 VSKEISKLKGSSNKPFYLVIGMVEG--KKYGRYLEAFV-----ELSPIVLSVSLICRGRERQSISITPKVLMQEAKKL-G  380 (429)
Q Consensus       309 l~~~l~~l~~~~~~~i~~I~G~~~d--Kd~~~~l~~l~-----~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~  380 (429)
                      ++++++.+.....+|+++|+|.+.+  .+....-+.+.     ..+|.++++..            .+..+.+..... .
T Consensus       335 aL~~l~~~~~~~~gr~I~VlG~m~e~G~~~~~~h~~i~~~ia~~~~d~vi~~g~------------~~~~~~~~~~~~~~  402 (454)
T 2am1_A          335 ILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGE------------DIAQLAQLASQMFP  402 (454)
T ss_dssp             HHHHHTTSCCCSSCEEEEEEECCCCCCTTHHHHHHHGGGGCCTTTCSEEEEEES------------TTHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHCCCCEEEEECC------------CHHHHHHHHHHHCC
T ss_conf             999998633203786699978620015358999999999999829989999798------------88999999986224


Q ss_pred             --C-----CEEEECCHHHHHHHHHHHCCCCCCCEEEEECCHH
Q ss_conf             --9-----7899699899999999860358867999949779
Q gi|254780821|r  381 --F-----QAMACSSMIEALSRVRKINEELPPPLILIAGSLY  415 (429)
Q Consensus       381 --~-----~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~y  415 (429)
                        .     ++..++++++|++.+.+..  +++|+||++||-.
T Consensus       403 ~~~~~~~~~~~~~~~~~~ai~~~~~~~--~~gDvVLiKGSr~  442 (454)
T 2am1_A          403 IGHVYYFKKTEDQDQFEDLVKQVKESL--GAHDQILLKGSNS  442 (454)
T ss_dssp             TTCEEEEEBSSSCBTHHHHHHHHHHHC--CTTEEEEEESSCC
T ss_pred             CCCCCCCCCCEECCCHHHHHHHHHHHC--CCCCEEEEEECCH
T ss_conf             354114553021278999999999637--9999899983754