HHsearch results for GI: 254780821 and protein with PDBid: 2am1_A
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A*
Probab=100.00 E-value=0 Score=303.92 Aligned_cols=335 Identities=17% Similarity=0.179 Sum_probs=210.4
Q ss_pred CCCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECC
Q ss_conf 77888999999987299588359839994589847999999999999789351413784110120089888477871558
Q gi|254780821|r 2 AADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVE 81 (429)
Q Consensus 2 ~~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~ 81 (429)
.+|.+.-+.+|.+++ .|+.+. ++|+||||||||||++|++++|+..|.+++.. ++. +..+.
T Consensus 80 V~d~~~al~~la~~~-~~~~~~-~vIgVTGTnGKTTt~~~l~~iL~~~~~~~~~~--------------gn~---~~~~g 140 (454)
T 2am1_A 80 VDDVLTAFQSLASYY-LEKTTV-DVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQ--------------GNY---NNEIG 140 (454)
T ss_dssp CSCHHHHHHHHHHHH-HHHHCC-EEEEEECCCSSSCHHHHHHHHHTTTSCEEECC--------------TTC---CSTTH
T ss_pred ECCHHHHHHHHHHHH-HHCCCC-CEEEEECCCCCCCEEHHHHHHHHHHCCCEECC--------------CCC---CCCCC
T ss_conf 898999999999999-708898-58999425887732027899877616733316--------------876---87767
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHH-HCCCCCCCEEEEEECCCHHCCCC
Q ss_conf 8999999999863047767795789999999874114462477764447--56764-13567751589860250000002
Q gi|254780821|r 82 DVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG--GSLDA-TNIIEKVAVSVITSISLDHEKIL 158 (429)
Q Consensus 82 ~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG--Gr~Da-Tnvi~~~~vavITnI~~DHle~L 158 (429)
.. ++ ..-...+.+++|+|+|.. |..+. +. +-+|+++|||||++||+|++
T Consensus 141 ---~~--------------------~~----~~~~~~~~~~~v~E~~~~~~~~~~~l~~-~~~p~iaviTNI~~dHld~~ 192 (454)
T 2am1_A 141 ---LP--------------------YT----VLHMPEGTEKLVLEMGQDHLGDIHLLSE-LARPKTAIVTLVGEAHLAFF 192 (454)
T ss_dssp ---HH--------------------HH----HHTCCTTCCEEEEECCCSSTTHHHHHHH-HHCCSEEEECCCCCSSCTTC
T ss_pred ---CH--------------------HH----HHHCCCCHHHHHHHHHCCCCHHHHHHHC-CCCCCEEEEECCCHHHHHHH
T ss_conf ---37--------------------88----8734221036788860354213788725-67996899908866765541
Q ss_pred CCCHHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC--CCCCCCCC---CCCCCEEEEEECCCCCC
Q ss_conf 7852344566653113---7983315444717898899998621056652--35763210---12585244431033334
Q gi|254780821|r 159 GNTVSAIAKDKSGIIK---PGCPVVIGHQVYDEVREILVSKAEKMGCPYN--VYGDDFYA---FEKNKCLVYQDKISQTN 230 (429)
Q Consensus 159 G~tle~Ia~eKa~I~k---~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~ 230 (429)
| |+|+|+.+|+.|++ ++..++.++ + +..... ........ ..+.+... ........+.... ...
T Consensus 193 ~-s~e~y~~~K~~lf~~~~~~~~vi~~d-d-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 263 (454)
T 2am1_A 193 K-DRSEIAKGKMQIADGMASGSLLLAPA-D-PIVEDY-----LPIDKKVVRFGQGAELEITDLVERKDSLTFKANF-LEQ 263 (454)
T ss_dssp C-CHHHHHHHHGGGGTTCCTTCEEEEES-C-GGGGGG-----CCSSSEEEEESTTSSBCEEEEEECSSCEEEEETT-CSS
T ss_pred C-CHHHHHHHHHHHHHCCCCCCCEECCC-C-HHHHHH-----HHHCCCCCCCCCCCCEEHHHHHHCCCCCCCCCCC-CCC
T ss_conf 0-06899998888873467545220267-7-899998-----7530233200456420013322034554212454-323
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEE-ECCCCHHHHHH
Q ss_conf 444443222211111469999875320000110011222233-6653035422875444578745999-33632157998
Q gi|254780821|r 231 LTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWI-DGGHNPNAGLV 308 (429)
Q Consensus 231 ~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~vii-D~AHNp~s~~~ 308 (429)
...++++|.||++|+++|++++..+|+ +.+.|.++|.++. .|||||++.. .++..++. ||||||+|+++
T Consensus 264 ~~~~~~~G~~nv~N~laAia~~~~lg~--~~~~i~~~l~~~~~~~~R~e~~~~-------~~~~~iidDsya~nP~s~~~ 334 (454)
T 2am1_A 264 ALDLPVTGKYNATNAMIASYVALQEGV--SEEQIRLAFQHLELTRNRTEWKKA-------ANGADILSDVYNANPTAMKL 334 (454)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHHHTTC--CHHHHHHHGGGCCCCCCCSCEECC-------TTTCEEEEECSCCSHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCC--CHHHEEECCCCCCCCCCCCEEEEC-------CCCCEEEEEECCCCHHHHHH
T ss_conf 433355667899999999999987335--312212001245665530016873-------79926865623699999999
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCC--CCHHHHHHHHH-----HHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC-C
Q ss_conf 8865433114777712431134679--89899999888-----63888999842288998421278989999999854-9
Q gi|254780821|r 309 VSKEISKLKGSSNKPFYLVIGMVEG--KKYGRYLEAFV-----ELSPIVLSVSLICRGRERQSISITPKVLMQEAKKL-G 380 (429)
Q Consensus 309 l~~~l~~l~~~~~~~i~~I~G~~~d--Kd~~~~l~~l~-----~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 380 (429)
++++++.+.....+|+++|+|.+.+ .+....-+.+. ..+|.++++.. .+..+.+..... .
T Consensus 335 aL~~l~~~~~~~~gr~I~VlG~m~e~G~~~~~~h~~i~~~ia~~~~d~vi~~g~------------~~~~~~~~~~~~~~ 402 (454)
T 2am1_A 335 ILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGE------------DIAQLAQLASQMFP 402 (454)
T ss_dssp HHHHHTTSCCCSSCEEEEEEECCCCCCTTHHHHHHHGGGGCCTTTCSEEEEEES------------TTHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHCCCCEEEEECC------------CHHHHHHHHHHHCC
T ss_conf 999998633203786699978620015358999999999999829989999798------------88999999986224
Q ss_pred --C-----CEEEECCHHHHHHHHHHHCCCCCCCEEEEECCHH
Q ss_conf --9-----7899699899999999860358867999949779
Q gi|254780821|r 381 --F-----QAMACSSMIEALSRVRKINEELPPPLILIAGSLY 415 (429)
Q Consensus 381 --~-----~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~y 415 (429)
. ++..++++++|++.+.+.. +++|+||++||-.
T Consensus 403 ~~~~~~~~~~~~~~~~~~ai~~~~~~~--~~gDvVLiKGSr~ 442 (454)
T 2am1_A 403 IGHVYYFKKTEDQDQFEDLVKQVKESL--GAHDQILLKGSNS 442 (454)
T ss_dssp TTCEEEEEBSSSCBTHHHHHHHHHHHC--CTTEEEEEESSCC
T ss_pred CCCCCCCCCCEECCCHHHHHHHHHHHC--CCCCEEEEEECCH
T ss_conf 354114553021278999999999637--9999899983754