HHsearch results for GI: 254780821 and protein with PDBid: 3eag_A
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58}
Probab=99.96 E-value=2.5e-30 Score=205.22 Aligned_cols=204 Identities=18% Similarity=0.205 Sum_probs=127.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429)
++|+||||||||||++|++++|+++|++++....-. ++....+ ..+. .....
T Consensus 109 ~vIaVTGTnGKTTTt~mi~~iL~~~g~~~~~~~~~~---------~~~~~~~-~~~~---------------~~~~~--- 160 (326)
T 3eag_A 109 WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGV---------PENFGVS-ARLP---------------QTPRQ--- 160 (326)
T ss_dssp EEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSE---------ETTSSCS-EECC---------------CCCSS---
T ss_pred CEEEEECCCCCEEHHHHHHHHHHHCCCCCCCCCCCC---------CCCCCCC-CCCC---------------CCCCC---
T ss_conf 379994689955499999999986199831114553---------2245760-0135---------------55444---
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHH--HHH-HCC-CCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCC
Q ss_conf 8999999987411446247776444756--764-135-677515898602500000027852344566653113---798
Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGS--LDA-TNI-IEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGC 177 (429)
Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr--~Da-Tnv-i~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~ 177 (429)
......|++|+|++.... .+. .+. .-+|+++|||||++||+|++| |+|+++.+|..+++ ++.
T Consensus 161 ----------~~~~~~~~~V~E~~~~~~~~~~~~~~~~~~~p~iaviTNI~~DHLd~~~-s~e~y~~~k~~~~~~~~~~g 229 (326)
T 3eag_A 161 ----------DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFA-DLGAIQTQFHYLVRTVPSEG 229 (326)
T ss_dssp ----------CTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSS-SHHHHHHHHHHHHTTSCTTS
T ss_pred ----------CCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCC
T ss_conf ----------4455673222221576535677403443468978999644454224348-99999999999997436573
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC--CCCC--CCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 331544471789889999862105665235763--2101--258524443103333444444322221111146999987
Q gi|254780821|r 178 PVVIGHQVYDEVREILVSKAEKMGCPYNVYGDD--FYAF--EKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQ 253 (429)
Q Consensus 178 ~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~ 253 (429)
.+|++.+ ++...+.+.+ ........++.+ +... ..+..+.............++++|+||++|+++|+++++
T Consensus 230 ~~v~n~d-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HNv~NalaAia~a~ 305 (326)
T 3eag_A 230 LIVCNGR-QQSLQDTLDK---GCWTPVEKFGTEHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAAR 305 (326)
T ss_dssp EEEEESS-CHHHHHHHTT---CCCSCEEEESSSSSEEEEEECTTSCEEEEETTEEEEEECCCCCSHHHHHHHHHHHHHHH
T ss_pred EEEEECC-CHHHHHHHHH---HCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 8999378-7899999865---21355200254202223331477169999999188999978652999999999999999
Q ss_pred HHHHCCHHHHCCCCCCCCCC
Q ss_conf 53200001100112222336
Q gi|254780821|r 254 MAGFTLEKECINAALQSVQW 273 (429)
Q Consensus 254 ~lg~~i~~~~I~~gL~~~~~ 273 (429)
.+|+ +.+.|.++|++++-
T Consensus 306 ~lGi--~~~~i~~aL~~F~G 323 (326)
T 3eag_A 306 HVGV--DIQTACEALGAFKN 323 (326)
T ss_dssp HHTC--CHHHHHHHHHTCCC
T ss_pred HCCC--CHHHHHHHHCCCCC
T ss_conf 8499--99999999746989