Query gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 429
No_of_seqs 187 out of 4831
Neff 8.8
Searched_HMMs 23785
Date Mon May 30 13:01:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780821.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vos_A Folylpolyglutamate synt 100.0 0 0 675.3 33.2 399 4-427 45-485 (487)
2 3nrs_A Dihydrofolate:folylpoly 100.0 0 0 616.1 29.7 390 5-426 34-437 (437)
3 1o5z_A Folylpolyglutamate synt 100.0 0 0 596.3 32.2 390 3-424 32-431 (442)
4 1jbw_A Folylpolyglutamate synt 100.0 0 0 540.7 30.5 389 3-424 19-423 (428)
5 1w78_A FOLC bifunctional prote 100.0 0 0 521.5 31.1 384 5-424 31-414 (422)
6 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 0 0 346.8 28.3 360 2-415 124-505 (535)
7 1e8c_A UDP-N-acetylmuramoylala 100.0 0 0 331.3 27.1 356 3-412 87-464 (498)
8 3hn7_A UDP-N-acetylmuramate-L- 100.0 0 0 312.9 18.7 353 24-425 122-518 (524)
9 1j6u_A UDP-N-acetylmuramate-al 100.0 0 0 306.6 20.2 328 25-419 115-448 (469)
10 2f00_A UDP-N-acetylmuramate--L 100.0 1.4E-45 0 301.3 15.8 340 24-426 119-480 (491)
11 1p3d_A UDP-N-acetylmuramate--a 100.0 1.6E-43 0 286.7 22.1 334 24-422 118-470 (475)
12 2am1_A SP protein, UDP-N-acety 100.0 0 0 303.9 6.5 335 2-415 80-442 (454)
13 1gg4_A UDP-N-acetylmuramoylala 100.0 2.3E-43 0 285.7 16.8 344 3-426 81-451 (452)
14 3lk7_A UDP-N-acetylmuramoylala 100.0 2.4E-42 0 279.4 18.4 310 17-413 106-424 (451)
15 2x5o_A UDP-N-acetylmuramoylala 100.0 2.1E-41 1.4E-45 273.6 14.6 311 25-423 105-431 (439)
16 3eag_A UDP-N-acetylmuramate:L- 100.0 2.5E-30 1E-34 205.2 7.1 204 25-273 109-323 (326)
17 3mvn_A UDP-N-acetylmuramate:L- 99.5 1.9E-13 8.1E-18 100.8 9.7 139 264-424 14-161 (163)
18 2www_A Methylmalonic aciduria 97.3 0.001 4.2E-08 40.8 8.2 144 25-191 75-229 (349)
19 1byi_A Dethiobiotin synthase; 96.7 0.0016 6.6E-08 39.5 4.5 32 25-56 2-36 (224)
20 2qmo_A Dethiobiotin synthetase 96.4 0.0038 1.6E-07 37.2 4.9 33 25-57 2-37 (220)
21 2p67_A LAO/AO transport system 96.3 0.018 7.6E-07 33.0 7.7 155 9-188 42-208 (341)
22 2j37_W Signal recognition part 96.1 0.047 2E-06 30.4 9.3 33 25-57 102-136 (504)
23 3end_A Light-independent proto 96.1 0.0058 2.4E-07 36.1 4.4 30 25-55 42-74 (307)
24 3b9q_A Chloroplast SRP recepto 95.9 0.0054 2.2E-07 36.3 3.7 20 185-204 139-158 (302)
25 3fgn_A Dethiobiotin synthetase 95.8 0.0092 3.9E-07 34.8 4.5 33 25-57 27-62 (251)
26 2qm8_A GTPase/ATPase; G protei 95.3 0.023 9.7E-07 32.4 4.9 48 9-57 41-90 (337)
27 3p32_A Probable GTPase RV1496/ 94.5 0.09 3.8E-06 28.7 6.3 154 9-187 65-230 (355)
28 2og2_A Putative signal recogni 94.4 0.17 7E-06 27.1 7.4 15 372-386 322-336 (359)
29 1np6_A Molybdopterin-guanine d 94.3 0.069 2.9E-06 29.4 5.4 35 22-56 4-40 (174)
30 1g3q_A MIND ATPase, cell divis 94.3 0.049 2E-06 30.4 4.6 31 25-55 3-36 (237)
31 3bfv_A CAPA1, CAPB2, membrane 94.2 0.061 2.6E-06 29.7 5.0 49 5-55 65-116 (271)
32 2ph1_A Nucleotide-binding prot 94.2 0.065 2.7E-06 29.6 5.0 33 23-55 17-52 (262)
33 3cio_A ETK, tyrosine-protein k 94.1 0.12 5.2E-06 27.8 6.3 32 24-55 104-138 (299)
34 2ffh_A Protein (FFH); SRP54, s 94.1 0.26 1.1E-05 25.8 9.1 33 25-57 99-133 (425)
35 1xjc_A MOBB protein homolog; s 94.0 0.073 3.1E-06 29.2 5.0 35 21-56 2-38 (169)
36 3la6_A Tyrosine-protein kinase 93.9 0.074 3.1E-06 29.2 4.9 36 19-55 88-126 (286)
37 2v3c_C SRP54, signal recogniti 93.9 0.048 2E-06 30.4 3.9 34 24-57 99-134 (432)
38 3kl4_A SRP54, signal recogniti 93.5 0.092 3.9E-06 28.6 4.7 33 25-57 98-132 (433)
39 3k9g_A PF-32 protein; ssgcid, 93.4 0.065 2.8E-06 29.6 3.8 53 2-55 2-60 (267)
40 1a7j_A Phosphoribulokinase; tr 93.2 0.056 2.4E-06 30.0 3.2 31 25-55 6-38 (290)
41 2afh_E Nitrogenase iron protei 93.0 0.11 4.5E-06 28.2 4.5 31 25-55 3-35 (289)
42 1hyq_A MIND, cell division inh 92.5 0.13 5.5E-06 27.7 4.4 31 25-55 3-36 (263)
43 1vma_A Cell division protein F 92.3 0.27 1.1E-05 25.7 5.7 25 182-206 140-164 (306)
44 1sq5_A Pantothenate kinase; P- 92.2 0.19 8.1E-06 26.7 4.9 45 11-55 67-115 (308)
45 1rz3_A Hypothetical protein rb 92.0 0.26 1.1E-05 25.9 5.3 33 25-57 23-57 (201)
46 3ez2_A Plasmid partition prote 91.9 0.4 1.7E-05 24.7 6.3 53 3-55 83-148 (398)
47 1ihu_A Arsenical pump-driving 91.8 0.22 9.2E-06 26.3 4.8 34 24-57 8-43 (589)
48 3e70_C DPA, signal recognition 91.7 0.31 1.3E-05 25.4 5.5 25 182-206 165-189 (328)
49 3c8u_A Fructokinase; YP_612366 91.2 0.43 1.8E-05 24.5 5.7 45 10-55 9-55 (208)
50 1zu4_A FTSY; GTPase, signal re 90.9 0.28 1.2E-05 25.6 4.6 14 185-198 144-157 (320)
51 1ihu_A Arsenical pump-driving 90.8 0.096 4E-06 28.5 2.2 13 370-382 508-520 (589)
52 2qy9_A Cell division protein F 90.8 0.33 1.4E-05 25.2 4.9 28 180-207 133-160 (309)
53 1wcv_1 SOJ, segregation protei 90.7 0.18 7.4E-06 26.9 3.4 34 21-55 4-40 (257)
54 1ls1_A Signal recognition part 90.5 0.38 1.6E-05 24.9 5.0 26 181-206 133-158 (295)
55 1j8m_F SRP54, signal recogniti 90.4 0.42 1.8E-05 24.6 5.1 29 179-207 131-159 (297)
56 3ez9_A Para; DNA binding, wing 89.3 0.26 1.1E-05 25.8 3.4 52 4-55 87-151 (403)
57 2woo_A ATPase GET3; tail-ancho 88.6 0.15 6.5E-06 27.3 1.8 42 9-56 10-53 (329)
58 2oze_A ORF delta'; para, walke 88.1 0.52 2.2E-05 24.0 4.2 48 7-55 18-70 (298)
59 3io3_A DEHA2D07832P; chaperone 87.3 0.56 2.4E-05 23.8 4.0 37 20-57 15-55 (348)
60 2f1r_A Molybdopterin-guanine d 86.3 0.7 3E-05 23.2 4.1 31 25-55 3-35 (171)
61 3do6_A Formate--tetrahydrofola 86.1 0.66 2.8E-05 23.4 3.9 41 12-55 33-80 (543)
62 2px0_A Flagellar biosynthesis 85.9 0.99 4.2E-05 22.3 4.7 10 53-62 5-14 (296)
63 3cwq_A Para family chromosome 85.0 0.9 3.8E-05 22.5 4.1 29 26-55 2-33 (209)
64 1cp2_A CP2, nitrogenase iron p 84.5 0.65 2.7E-05 23.4 3.2 31 25-55 2-34 (269)
65 3ea0_A ATPase, para family; al 84.2 0.72 3E-05 23.1 3.3 32 24-55 4-39 (245)
66 3dm5_A SRP54, signal recogniti 84.1 1.8 7.6E-05 20.7 9.7 34 25-58 101-136 (443)
67 3aez_A Pantothenate kinase; tr 84.0 0.53 2.2E-05 23.9 2.6 37 15-51 77-119 (312)
68 1eg7_A Formyltetrahydrofolate 83.7 0.99 4.1E-05 22.3 3.8 41 12-55 47-94 (557)
69 3e1s_A Exodeoxyribonuclease V, 83.6 0.76 3.2E-05 23.0 3.2 42 10-55 196-237 (574)
70 2j28_9 Signal recognition part 82.8 2 8.5E-05 20.3 9.5 33 25-57 100-135 (430)
71 2g0t_A Conserved hypothetical 80.9 1.8 7.7E-05 20.6 4.4 34 322-355 245-282 (350)
72 2c5m_A CTP synthase; cytidine 80.5 1.3 5.5E-05 21.5 3.5 31 25-55 24-58 (294)
73 3igf_A ALL4481 protein; two-do 80.1 1.1 4.8E-05 21.9 3.1 36 26-61 4-43 (374)
74 3kjh_A CO dehydrogenase/acetyl 79.9 1.3 5.6E-05 21.4 3.4 29 27-55 3-33 (254)
75 1rj9_A FTSY, signal recognitio 79.8 2.4 0.0001 19.9 4.7 23 183-205 139-161 (304)
76 3nva_A CTP synthase; rossman f 79.7 2.6 0.00011 19.7 5.1 31 25-55 4-38 (535)
77 3iqw_A Tail-anchored protein t 78.7 1.1 4.7E-05 22.0 2.7 31 25-55 17-49 (334)
78 1s1m_A CTP synthase; CTP synth 78.2 2.4 0.0001 19.9 4.3 31 25-55 4-38 (545)
79 2qby_B CDC6 homolog 3, cell di 78.2 1.4 5.8E-05 21.4 3.0 41 6-48 29-71 (384)
80 1vht_A Dephospho-COA kinase; s 78.0 1.9 7.8E-05 20.6 3.7 25 25-53 5-31 (218)
81 2jeo_A Uridine-cytidine kinase 77.8 1.2 5E-05 21.8 2.6 33 16-50 19-53 (245)
82 1vco_A CTP synthetase; tetrame 76.8 2.8 0.00012 19.5 4.3 32 24-55 12-47 (550)
83 1kht_A Adenylate kinase; phosp 76.6 2.5 0.0001 19.8 4.0 30 25-54 4-35 (192)
84 2fp4_B Succinyl-COA ligase [GD 75.5 3.4 0.00014 18.9 6.9 100 293-401 290-393 (395)
85 2yvu_A Probable adenylyl-sulfa 75.5 3.4 0.00015 18.9 5.0 32 25-56 14-47 (186)
86 1nks_A Adenylate kinase; therm 75.5 2.1 8.8E-05 20.3 3.3 31 25-55 2-34 (194)
87 2woj_A ATPase GET3; tail-ancho 74.6 2.6 0.00011 19.7 3.7 32 25-56 19-54 (354)
88 2grj_A Dephospho-COA kinase; T 74.4 2.1 9E-05 20.2 3.2 25 26-53 14-40 (192)
89 1jjv_A Dephospho-COA kinase; P 74.2 2.2 9.4E-05 20.1 3.2 25 25-53 3-29 (206)
90 3iij_A Coilin-interacting nucl 73.2 2.3 9.8E-05 20.0 3.1 34 16-52 3-38 (180)
91 1dek_A Deoxynucleoside monopho 71.3 2.5 0.0001 19.8 2.9 24 25-51 2-27 (241)
92 1cke_A CK, MSSA, protein (cyti 69.3 4.1 0.00017 18.4 3.7 25 22-46 3-29 (227)
93 2z0h_A DTMP kinase, thymidylat 69.2 4.7 0.0002 18.1 3.9 33 27-59 3-37 (197)
94 1uj2_A Uridine-cytidine kinase 68.1 3.3 0.00014 19.0 3.0 25 26-50 24-50 (252)
95 3ch4_B Pmkase, phosphomevalona 67.6 3.8 0.00016 18.7 3.2 22 25-46 12-35 (202)
96 2wwf_A Thymidilate kinase, put 66.7 5.4 0.00023 17.7 6.9 32 25-56 11-44 (212)
97 1nn5_A Similar to deoxythymidy 65.8 5.7 0.00024 17.6 4.0 35 25-59 10-46 (215)
98 2pbr_A DTMP kinase, thymidylat 65.4 5.8 0.00024 17.5 5.5 32 26-57 2-35 (195)
99 1odf_A YGR205W, hypothetical 3 63.5 6.3 0.00026 17.3 3.8 23 26-48 33-57 (290)
100 2is6_A DNA helicase II; hydrol 62.3 2.4 0.0001 19.9 1.4 32 18-51 20-52 (680)
101 2vli_A Antibiotic resistance p 62.2 3.6 0.00015 18.8 2.2 26 19-46 2-29 (183)
102 2f6r_A COA synthase, bifunctio 61.4 4.6 0.00019 18.1 2.7 42 7-53 53-102 (281)
103 2yxb_A Coenzyme B12-dependent 60.5 7.1 0.0003 17.0 7.1 44 10-53 5-49 (161)
104 1pjr_A PCRA; DNA repair, DNA r 58.7 5.4 0.00023 17.7 2.6 40 11-51 7-54 (724)
105 4tmk_A Protein (thymidylate ki 58.5 7.6 0.00032 16.8 4.7 34 25-58 4-39 (213)
106 1fnn_A CDC6P, cell division co 56.5 3.5 0.00015 18.9 1.4 22 26-48 49-70 (389)
107 1gtv_A TMK, thymidylate kinase 56.3 3.6 0.00015 18.8 1.4 34 27-60 3-38 (214)
108 1uaa_A REP helicase, protein ( 53.9 4.4 0.00019 18.2 1.5 26 25-51 19-45 (673)
109 1uf9_A TT1252 protein; P-loop, 52.8 7.6 0.00032 16.8 2.6 32 17-53 2-35 (203)
110 3fdi_A Uncharacterized protein 52.7 9.3 0.00039 16.2 3.0 25 25-52 7-33 (201)
111 2xgj_A ATP-dependent RNA helic 51.5 9.9 0.00042 16.1 3.2 32 26-60 106-138 (1010)
112 3kb2_A SPBC2 prophage-derived 50.7 10 0.00043 16.0 3.6 23 25-47 2-26 (173)
113 2j6v_A UV endonuclease, UVDE; 50.0 11 0.00044 15.9 3.3 20 174-193 122-141 (301)
114 2pez_A Bifunctional 3'-phospho 48.7 11 0.00046 15.8 4.9 31 25-55 6-38 (179)
115 1jwy_B Dynamin A GTPase domain 48.4 11 0.00047 15.8 3.1 38 6-47 7-46 (315)
116 2wjy_A Regulator of nonsense t 47.9 11 0.00048 15.7 3.1 30 29-60 379-409 (800)
117 2i3b_A HCR-ntpase, human cance 47.5 12 0.00048 15.7 5.4 29 26-54 3-33 (189)
118 3lv8_A DTMP kinase, thymidylat 47.0 12 0.00049 15.6 4.8 32 25-56 28-61 (236)
119 2nu8_B SCS-beta, succinyl-COA 46.7 12 0.0005 15.6 9.3 100 293-401 283-386 (388)
120 1gm5_A RECG; helicase, replica 45.0 9.1 0.00038 16.3 2.0 48 7-60 375-426 (780)
121 2qby_A CDC6 homolog 1, cell di 44.3 8.3 0.00035 16.6 1.7 24 26-49 47-72 (386)
122 2qt1_A Nicotinamide riboside k 43.6 13 0.00056 15.3 2.8 23 25-47 22-46 (207)
123 3h1t_A Type I site-specific re 43.4 11 0.00046 15.8 2.2 18 36-53 28-45 (590)
124 3hdt_A Putative kinase; struct 41.5 14 0.0006 15.1 3.3 22 25-46 15-38 (223)
125 2e2z_A TIM15; protein import, 41.2 6.4 0.00027 17.2 0.8 26 152-177 51-79 (100)
126 3lxw_A GTPase IMAP family memb 39.3 3.3 0.00014 19.0 -1.0 31 10-42 11-41 (247)
127 1w36_D RECD, exodeoxyribonucle 38.9 16 0.00066 14.9 3.6 33 25-59 165-204 (608)
128 1ji0_A ABC transporter; ATP bi 38.4 16 0.00067 14.8 2.8 22 25-46 33-56 (240)
129 2bdt_A BH3686; alpha-beta prot 38.2 15 0.00064 14.9 2.3 23 24-46 2-26 (189)
130 2xtp_A GTPase IMAP family memb 38.0 11 0.00048 15.7 1.6 16 26-42 27-42 (260)
131 2qag_B Septin-6, protein NEDD5 37.7 7.7 0.00032 16.8 0.7 18 26-47 47-64 (427)
132 1qhx_A CPT, protein (chloramph 36.7 17 0.00071 14.6 3.0 23 25-47 4-28 (178)
133 2v54_A DTMP kinase, thymidylat 35.2 18 0.00075 14.5 3.9 29 25-53 5-35 (204)
134 2npi_A Protein CLP1; CLP1-PCF1 35.1 18 0.00075 14.5 2.7 39 25-63 139-189 (460)
135 2h92_A Cytidylate kinase; ross 34.3 18 0.00078 14.4 2.8 21 26-46 5-27 (219)
136 2aka_B Dynamin-1; fusion prote 33.9 19 0.00079 14.4 3.8 38 6-47 8-48 (299)
137 1via_A Shikimate kinase; struc 33.3 19 0.00081 14.3 3.4 22 25-46 5-28 (175)
138 2bwj_A Adenylate kinase 5; pho 32.8 20 0.00082 14.3 3.6 33 9-46 2-36 (199)
139 2w00_A HSDR, R.ECOR124I; ATP-b 32.4 18 0.00077 14.4 1.9 37 19-57 299-336 (1038)
140 3fed_A Glutamate carboxypeptid 32.1 19 0.00081 14.3 2.0 42 5-53 23-64 (707)
141 2gno_A DNA polymerase III, gam 31.5 21 0.00086 14.1 4.0 69 3-91 3-73 (305)
142 3l9o_A ATP-dependent RNA helic 31.3 21 0.00087 14.1 2.7 34 25-60 201-236 (1108)
143 3kgf_A Probable 3-deoxy-D-arab 31.0 21 0.00088 14.1 2.1 43 308-350 317-363 (464)
144 1of1_A Thymidine kinase; trans 30.4 21 0.0009 14.0 2.0 35 16-50 39-77 (376)
145 2if2_A Dephospho-COA kinase; a 29.0 23 0.00095 13.9 3.4 25 25-53 2-28 (204)
146 3f5f_A Maltose-binding peripla 28.4 23 0.00098 13.8 2.5 40 387-427 355-401 (658)
147 2x2e_A Dynamin-1; nitration, h 28.1 23 0.00099 13.8 3.9 41 7-53 9-51 (341)
148 2rhm_A Putative kinase; ZP_007 27.9 24 0.00099 13.7 3.2 22 25-46 6-29 (193)
149 2qag_C Septin-7; cell cycle, c 27.6 17 0.00073 14.6 1.1 19 26-48 36-54 (418)
150 1bif_A 6-phosphofructo-2-kinas 27.0 25 0.001 13.6 3.7 32 26-57 41-74 (469)
151 3tmk_A Thymidylate kinase; pho 26.6 25 0.0011 13.6 2.0 27 25-51 6-34 (216)
152 1x6v_B Bifunctional 3'-phospho 26.6 25 0.0011 13.6 3.1 31 25-55 53-85 (630)
153 2ghi_A Transport protein; mult 25.1 8.1 0.00034 16.6 -0.9 18 25-42 47-66 (260)
154 2gks_A Bifunctional SAT/APS ki 24.8 27 0.0011 13.4 6.0 11 200-210 257-267 (546)
155 1c76_A Staphylokinase, SAK; be 24.2 28 0.0012 13.3 4.6 45 26-95 26-70 (136)
156 2ccj_A DTMP kinase, thymidylat 24.2 28 0.0012 13.3 4.5 30 26-56 4-35 (205)
157 1b77_A GP45, protein (sliding 24.1 24 0.001 13.7 1.4 13 190-202 123-135 (228)
158 1y81_A Conserved hypothetical 23.6 28 0.0012 13.2 3.6 36 17-53 8-44 (138)
159 1knq_A Gluconate kinase; ALFA/ 21.8 31 0.0013 13.0 3.3 22 25-46 9-32 (175)
160 1iuk_A Hypothetical protein TT 21.7 31 0.0013 13.0 3.5 30 25-54 14-44 (140)
161 1ye8_A Protein THEP1, hypothet 21.6 31 0.0013 13.0 3.3 21 27-47 3-25 (178)
162 1g5t_A COB(I)alamin adenosyltr 21.4 31 0.0013 13.0 3.6 31 25-55 29-61 (196)
163 2jaq_A Deoxyguanosine kinase; 20.3 33 0.0014 12.8 3.5 21 26-46 2-24 (205)
No 1
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, conformational change, peptidoglycan synthesis, cell division, cobalt binding; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=0 Score=675.33 Aligned_cols=399 Identities=28% Similarity=0.408 Sum_probs=342.5
Q ss_pred CCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHH
Q ss_conf 88899999998729958835983999458984799999999999978935141378411012008988847787155889
Q gi|254780821|r 4 DSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDV 83 (429)
Q Consensus 4 ~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~ 83 (429)
=+|+||++||++|||||+++ |||||||||||||||+|+++||+++|+|||+||||||++++|||+|| |++|++.
T Consensus 45 ~gL~ri~~~l~~lg~P~~~~-~vI~VtGTNGKtSt~~~l~~iL~~~G~~vG~~tSPhl~~~~Eri~i~-----g~~I~~~ 118 (487)
T 2vos_A 45 PSLTRISALMDLLGSPQRSY-PSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISID-----GKPISPA 118 (487)
T ss_dssp TTCHHHHHHHHHTTCGGGSS-CEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEET-----TEECCHH
T ss_pred CCHHHHHHHHHHCCCHHHCC-CEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEEC-----CEECCHH
T ss_conf 98799999999749927619-97999888018999999999999779986896787738424599999-----9983899
Q ss_pred HHHHHHHHHHHC-------------CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 999999998630-------------4776779578999999987411446247776444756764135677515898602
Q gi|254780821|r 84 ELLDVFRRVRRV-------------KSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSI 150 (429)
Q Consensus 84 ~~~~~~~~i~~~-------------~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI 150 (429)
++.+++.++... .....+||||++|++||.+|.++++|++|+|+|+|||+|+||+++ |+++|||||
T Consensus 119 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~~~~~~~d~~v~E~glgg~~datn~~~-~~vavITnI 197 (487)
T 2vos_A 119 QYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRWDATNVIN-APVAVITPI 197 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCSSC-CSEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC-CCEEEECCC
T ss_conf 9999999998998764455432114699988778999999999987503168888420465304210345-564787167
Q ss_pred CCHHCCCCCCCHHHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----CCE
Q ss_conf 5000000278523445666531137------98331544471789889999862105665235763210125-----852
Q gi|254780821|r 151 SLDHEKILGNTVSAIAKDKSGIIKP------GCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEK-----NKC 219 (429)
Q Consensus 151 ~~DHle~LG~tle~Ia~eKa~I~k~------~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~-----~~~ 219 (429)
++||+|+||+|+++||++|++||+. +.++|++.+ ++++.+++..++.+.++..+..+.++..... +..
T Consensus 198 ~~DH~d~lG~t~e~ia~eKagIi~~~~~~~p~~~~v~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (487)
T 2vos_A 198 SIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQ-VPKVMEVLLAESVRADASVAREDSEFAVLRRQIAVGGQV 276 (487)
T ss_dssp CCCBCSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCC-CHHHHHHHHHHHHHTTCEEEEBTTTBEEEEEEEETTEEE
T ss_pred CCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CHHHHHHHHHHHHHCCCEEEECCCCCCEEEEECCCCCCE
T ss_conf 7652223366899999998767763335799725994354-278999999999745962662155410012100257723
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-----HHCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCE
Q ss_conf 444310333344444432222111114699998753-----200001100112222336653035422875444578745
Q gi|254780821|r 220 LVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMA-----GFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSE 294 (429)
Q Consensus 220 ~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~l-----g~~i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~ 294 (429)
+.+...........++|+|.||++|+++|++++..+ ...++.+.|++||++++||||||.+..++ .
T Consensus 277 ~~~~~~~~~~~~~~l~L~G~h~~~Na~~Aia~~~~l~~~~~~~~i~~~~i~~gL~~~~~pGR~e~i~~~~---------~ 347 (487)
T 2vos_A 277 LQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLDGDAVRAGFAAVTSPGRLERMRSAP---------T 347 (487)
T ss_dssp EEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHTCCCTTSSEEEETTT---------E
T ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCC---------E
T ss_conf 7883488740244468752668988999999999997523433356899999876414788643025797---------6
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 99933632157998886543311477771243113467989899999888638889998422889984212789899999
Q gi|254780821|r 295 VWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQ 374 (429)
Q Consensus 295 viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~ 374 (429)
|++||||||+|+++++++++.. ++.+++++|||+++|||..+|++.+.+.+|.++++.. ..+++.+++++++
T Consensus 348 viiD~AHNp~a~~~ll~~l~~~--~~~~~ii~V~G~~~dKD~~~~l~~l~~~~d~viit~~------~~pR~~~~~~l~~ 419 (487)
T 2vos_A 348 VFIDAAHNPAGASALAQTLAHE--FDFRFLVGVLSVLGDKDVDGILAALEPVFDSVVVTHN------GSPRALDVEALAL 419 (487)
T ss_dssp EEECCCCSHHHHHHHHHHHHHS--CCCSEEEEEECCBTTBCHHHHHHHHTTTCSEEEECCC------SCTTBCCHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHH--CCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEEECC------CCCCCCCHHHHHH
T ss_conf 9994587989999999989986--5899789999606995999999998854899999689------9967799999999
Q ss_pred HHHHC--CCCEEEECCHHHHHHHHHHHCC-----------CCCCCEEEEECCHHHHHHHHHHCCCC
Q ss_conf 99854--9978996998999999998603-----------58867999949779999999987974
Q gi|254780821|r 375 EAKKL--GFQAMACSSMIEALSRVRKINE-----------ELPPPLILIAGSLYLAGEALRENGVR 427 (429)
Q Consensus 375 ~~~~~--~~~~~~~~~~~eAi~~a~~~~~-----------~~~~d~VLV~GS~ylvge~l~~~g~~ 427 (429)
.+... ..++..++++++|++.|.++++ ..++|.|||||||||||++++++|+.
T Consensus 420 ~~~~~~~~~~v~~~~~~~eAi~~A~~~a~~~~~~~~~~~~~~~~d~IlV~GSlylvgev~~~l~~~ 485 (487)
T 2vos_A 420 AAGERFGPDRVRTAENLRDAIDVATSLVDDAAADPDVAGDAFSRTGIVITGSVVTAGAARTLFGRD 485 (487)
T ss_dssp HHHHHHCGGGEEECSSHHHHHHHHHHHHHHHHTCTTTTC----CEEEEEESSHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCC
T ss_conf 998637876479918999999999997655332234554147998599975199999999985659
No 2
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
Probab=100.00 E-value=0 Score=616.07 Aligned_cols=390 Identities=26% Similarity=0.364 Sum_probs=329.4
Q ss_pred CHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHH
Q ss_conf 88999999987299588359839994589847999999999999789351413784110120089888477871558899
Q gi|254780821|r 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVE 84 (429)
Q Consensus 5 ~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~ 84 (429)
+|+||++||++|||||+++ |||||||||||||||+|+++||+++|+|||+||||||.+++|||++| +++|++.+
T Consensus 34 ~l~r~~~ll~~lg~P~~~~-~vI~VtGTNGKtSt~~~i~~iL~~~g~kvG~~tSPhl~~~~Eri~~~-----~~~i~~~~ 107 (437)
T 3nrs_A 34 GLERVKQVAERLDLLKPAP-KIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQ-----GQELSEAE 107 (437)
T ss_dssp CCHHHHHHHHHTTCSCSSS-EEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEET-----TEECCHHH
T ss_pred CHHHHHHHHHHCCCCCCCC-CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEC-----CEECCHHH
T ss_conf 8599999999729930039-88999778308999999999999879987997888415012369989-----96426899
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHH
Q ss_conf 99999998630477677957899999998741144624777644475676413567751589860250000002785234
Q gi|254780821|r 85 LLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSA 164 (429)
Q Consensus 85 ~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~ 164 (429)
+.+++.++........+++||++|++|+.+|.+++||++|+|+|+||++|+||++ .|+++|||||++||+|+||+|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~d~~i~E~g~gg~~d~t~~~-~~~~~viTnI~~DH~d~lg~t~~~ 186 (437)
T 3nrs_A 108 HSHSFAQIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDATNIV-DSDVAAITSIALDHTDWLGYDRES 186 (437)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTTSGGGGS-CCSEEEECCCCCCBCCCTTCSHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCC-CCCEEEECCCCHHHHHHCCCHHHH
T ss_conf 8788764332047888774788999999999756985899704713441775256-544156614242067651414899
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE-----EEE-----ECCCCCCCCCC
Q ss_conf 45666531137983315444717898899998621056652357632101258524-----443-----10333344444
Q gi|254780821|r 165 IAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCL-----VYQ-----DKISQTNLTVL 234 (429)
Q Consensus 165 Ia~eKa~I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~l 234 (429)
||++|++|++++.+++++.+..+ .++.+.+...++..+..+.++......... ... ...... ....
T Consensus 187 Ia~~K~~i~k~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 262 (437)
T 3nrs_A 187 IGREKAGVFRGGKPAVVGEPDMP---QSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGER-QLTG 262 (437)
T ss_dssp HHHHHGGGCCTTSEEEECCSSCC---HHHHHHHHHHTCEEEEBTTTEEEEC--------------CCEEEEETTE-EEEE
T ss_pred HHHHHHCCCCCCCCCCCCCCCCH---HHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-HHCC
T ss_conf 99996163136986311333324---6799999871773010474222212230122223222224420135410-0102
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 43222211111469999875320000110011222233665303542287544457874599933632157998886543
Q gi|254780821|r 235 GLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEIS 314 (429)
Q Consensus 235 ~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~ 314 (429)
...|.||+.|+++|++++..+++++++..+..++....||||||++..+| .+|+||||||+|+++++++++
T Consensus 263 ~~~~~~~~~na~~a~a~~~~~~~~i~~~~~~~~~~~~~~pGR~e~i~~~~---------~~ilD~AHNp~a~~~l~~~l~ 333 (437)
T 3nrs_A 263 LPVPNVPLANAATALAVLHYSELPLSDEAIRQGLQAASLPGRFQVVSEQP---------LLILDVAHNPHAARYLVNRLA 333 (437)
T ss_dssp ECCCSSCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHCCCTTSSEEEETTT---------EEEECCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEECCCC---------CEEEECCCCHHHHHHHHHHHH
T ss_conf 11557999999987665543033441999987531257688511550467---------456624778899999999999
Q ss_pred HHCC----CCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHH
Q ss_conf 3114----777712431134679898999998886388899984228899842127898999999985499789969989
Q gi|254780821|r 315 KLKG----SSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMI 390 (429)
Q Consensus 315 ~l~~----~~~~~i~~I~G~~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 390 (429)
+... ...+++++|||+++|||+.+|++.+.+.++.++++.. ..++..+++++.+. ..+...+.+++
T Consensus 334 ~~~~~~~~~~~~ki~~V~G~~~dKd~~~~l~~l~~~~~~ii~~~~------d~~r~~~~~~l~~~----~~~~~~~~~~~ 403 (437)
T 3nrs_A 334 QVINPVNASKQGKVRAVVGMLSDKDIAGTLACLSERVDEWYCAPL------EGPRGASAGQLAEH----LVSARQFSDVE 403 (437)
T ss_dssp HTC--------CCEEEEECCBTTBCHHHHHHHHTTTCCEEEECCC------SSTTBCCHHHHHTT----CSSCEECSSHH
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEECC------CCCCCCCHHHHHHH----HHHCCCCCCHH
T ss_conf 986444301479869996435888999999998855899999799------99777999999998----87576369999
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCC
Q ss_conf 999999986035886799994977999999998797
Q gi|254780821|r 391 EALSRVRKINEELPPPLILIAGSLYLAGEALRENGV 426 (429)
Q Consensus 391 eAi~~a~~~~~~~~~d~VLV~GS~ylvge~l~~~g~ 426 (429)
+|++.|.+.+ +++|+||||||||||||+++.++.
T Consensus 404 eAi~~a~~~a--~~~d~vLI~GSlylvgevl~~L~~ 437 (437)
T 3nrs_A 404 TAWRQAMQDA--DTQDVVIVCGSFHTVAHVMAALHL 437 (437)
T ss_dssp HHHHHHHHHC--CTTCEEEEESSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHC--CCCCEEEEEEHHHHHHHHHHHCCC
T ss_conf 9999999847--998869997169999999987679
No 3
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166, structural genomics, JCSG, PSI, protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=0 Score=596.29 Aligned_cols=390 Identities=29% Similarity=0.431 Sum_probs=331.1
Q ss_pred CCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCH
Q ss_conf 78889999999872995883598399945898479999999999997893514137841101200898884778715588
Q gi|254780821|r 3 ADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVED 82 (429)
Q Consensus 3 ~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~ 82 (429)
+-+|+||++||++|||||+++ |+|||||||||||||+|+++||+++|+|||+||||||.+++|||+|| |.++++
T Consensus 32 ~~~l~r~~~~l~~lg~P~~~l-~vI~VtGTNGKtSt~~~l~~iL~~~g~kvG~~tSp~l~~~~Eri~in-----g~~~~~ 105 (442)
T 1o5z_A 32 KPGLERISMLLSKLGNPHLEY-KTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLN-----EEYISE 105 (442)
T ss_dssp CCCSHHHHHHHHHTTCGGGSS-EEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEET-----TEECCH
T ss_pred CCCHHHHHHHHHHCCCHHHHC-CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEC-----CEECCH
T ss_conf 998399999999729907609-98999787247999999999999879988997887627420189999-----994478
Q ss_pred HHHHHHHHHHHHC------CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCC
Q ss_conf 9999999998630------4776779578999999987411446247776444756764135677515898602500000
Q gi|254780821|r 83 VELLDVFRRVRRV------KSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEK 156 (429)
Q Consensus 83 ~~~~~~~~~i~~~------~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle 156 (429)
..+.+....++.. .....+++||++|++++.+|.+++||++|+|+|+||++|+||+++ ++++++|+|++||.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~~~~~~~f~~~~~d~~i~e~g~~g~~d~~~~~~-~~~~vit~i~~dh~~ 184 (442)
T 1o5z_A 106 EDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVVF-PLCSTIVTVDRDHEK 184 (442)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTCGGGGCC-CSCEEECCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEECCEEEEC-CCCCEEEEECHHHHH
T ss_conf 8999999987765543301578889899999999999854336868988604454031246503-310114320233788
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC----CCCEEEEEECCCCCCCC
Q ss_conf 02785234456665311379833154447178988999986210566523576321012----58524443103333444
Q gi|254780821|r 157 ILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFE----KNKCLVYQDKISQTNLT 232 (429)
Q Consensus 157 ~LG~tle~Ia~eKa~I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 232 (429)
+||+++++|+++|+++++++.+++++.+ .+....+..+.+............++.... .................
T Consensus 185 ~Lg~~l~~i~~~k~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (442)
T 1o5z_A 185 TLGYTIEQIAWEKSGIIKERVPLVTGER-KREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDL 263 (442)
T ss_dssp ---CCHHHHHHHHGGGCCTTCCEEECCC-CHHHHHHHHHHHHHHTCCEEEBTTTBEEEEEECCTTCEEEEEESSSEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEEEECCCCCCCCC
T ss_conf 8888899999986311235774100455-558899999999960886378740100111101346733653276630243
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 44432222111114699998753200001100112222336653035422875444578745999336321579988865
Q gi|254780821|r 233 VLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKE 312 (429)
Q Consensus 233 ~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~ 312 (429)
.++++|.||++|+++|++++..+|++++.+.+.+++....||||||++.. ++..+|+||||||+|+++++++
T Consensus 264 ~~~l~G~~ni~Na~~Aiaa~~~lg~~i~~~~~~~~l~~~~~pGR~e~i~~--------~~~~viiD~AHNp~ai~~ll~~ 335 (442)
T 1o5z_A 264 VLTMNGPHQIENAGVALKTLEATGLPLSEKAIREGLKNAKNLGRFEILEK--------NGKMYILDGAHNPHGAESLVRS 335 (442)
T ss_dssp EESSCSTHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCTTSSEEEEE--------TTEEEEECCCCSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC--------CCCEEEEECCCCHHHHHHHHHH
T ss_conf 54667467999999999999983983367876556533668997744236--------6756999778798999999999
Q ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHH
Q ss_conf 43311477771243113467989899999888638889998422889984212789899999998549978996998999
Q gi|254780821|r 313 ISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEA 392 (429)
Q Consensus 313 l~~l~~~~~~~i~~I~G~~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eA 392 (429)
++... +.+++++|||+++|||..+|++.+.+.+|.++.+.. ..++..+++.+.+.+.....++..++++.+|
T Consensus 336 l~~~~--~~~~i~~V~G~~~dKD~~~~l~~l~~~~d~viit~~------~~~R~~~~~~i~~~~~~~~~~~~~~~d~~~a 407 (442)
T 1o5z_A 336 LKLYF--NGEPLSLVIGILDDKNREDILRKYTGIFERVIVTRV------PSPRMKDMNSLVDMAKKFFKNVEVIEDPLEA 407 (442)
T ss_dssp HHHHC--TTCCEEEEECCCTTSCHHHHHGGGTTTCSEEEECCC------SSTTCCCHHHHHHHHHHHCSCCEECSSHHHH
T ss_pred HHHHH--CCCCEEEEEEEECCCCHHHHHHHHHHHCCEEEEECC------CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 98874--568748999850798999999998855799999899------9967689999999999857984118559999
Q ss_pred HHHHHHHCCCCCCCEEEEECCHHHHHHHHHHC
Q ss_conf 99999860358867999949779999999987
Q gi|254780821|r 393 LSRVRKINEELPPPLILIAGSLYLAGEALREN 424 (429)
Q Consensus 393 i~~a~~~~~~~~~d~VLV~GS~ylvge~l~~~ 424 (429)
++ .++|.|||||||||||++++++
T Consensus 408 i~--------~~~d~vlV~GSlylvg~v~~~l 431 (442)
T 1o5z_A 408 IE--------STERATVVTGSLFLVGYVREFL 431 (442)
T ss_dssp HH--------TCCSEEEEESCHHHHHHHHHHH
T ss_pred HH--------CCCCCEEEEEEHHHHHHHHHHH
T ss_conf 72--------7999999981199999999999
No 4
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=0 Score=540.69 Aligned_cols=389 Identities=32% Similarity=0.471 Sum_probs=321.7
Q ss_pred CCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCH
Q ss_conf 78889999999872995883598399945898479999999999997893514137841101200898884778715588
Q gi|254780821|r 3 ADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVED 82 (429)
Q Consensus 3 ~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~ 82 (429)
+.+|+||+++|++|||||+++ ++|||||||||||||+|+++||+++|+|||+||||||.+++|||+++ |.++++
T Consensus 19 ~~~~~r~~~~l~~lg~P~~~~-~~I~VTGTNGKTTTs~~l~~iL~~~G~kvG~~tSp~l~~~~eri~~~-----g~~i~~ 92 (428)
T 1jbw_A 19 TGDHRRILTLLHALGNPQQQG-RYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID-----HEPIPD 92 (428)
T ss_dssp CSSCHHHHHHHHHTTCGGGSS-CEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEET-----TEECCH
T ss_pred CCCHHHHHHHHHHCCCHHHHC-CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEEC-----CEECCH
T ss_conf 898799999999749938709-98999898227999999999999889988997888747024489999-----995578
Q ss_pred HHHHHHHHHHHHC-------CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHC
Q ss_conf 9999999998630-------477677957899999998741144624777644475676413567751589860250000
Q gi|254780821|r 83 VELLDVFRRVRRV-------KSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHE 155 (429)
Q Consensus 83 ~~~~~~~~~i~~~-------~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHl 155 (429)
..+.+..+.+... ....++|+|+++++.++.+|.++++|++++|+|+||++|+||.+. +.++++||++.||.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~e~~~~~~~~~~~~~~-~~~~~it~i~~dh~ 171 (428)
T 1jbw_A 93 AALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVIT-PVVSVLTEVALDHQ 171 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCSCC-CSEEEECCCCSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCEEEE-CCEEEEECCCCHHH
T ss_conf 99999999989999988752268888689999999999998726747997523021104625741-23223404450089
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCCEEEEEECCCCCC
Q ss_conf 00278523445666531137983315444717898899998621056652357632101-----2585244431033334
Q gi|254780821|r 156 KILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAF-----EKNKCLVYQDKISQTN 230 (429)
Q Consensus 156 e~LG~tle~Ia~eKa~I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 230 (429)
++||+++++++++|.++++++.+++.+.+ .+........++....+.......++... ..+....+........
T Consensus 172 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (428)
T 1jbw_A 172 KLLGHTITAIAKHKAGIIKRGIPVVTGNL-VPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRIS 250 (428)
T ss_dssp HHHCSSHHHHHHHHGGGCCTTCCEEECCC-CHHHHHHHHHHHHHHTCCEEEBTTTEEEEEEEECSSSEEEEEEETTEEEE
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCEEECCC-CCHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHCCCCCCEEEECCCCHHC
T ss_conf 88665399999985413324653010356-71467899999986178412025422220111024576113402210002
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHC----CHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHH
Q ss_conf 4444432222111114699998753200----001100112222336653035422875444578745999336321579
Q gi|254780821|r 231 LTVLGLVGEHQYINAATAICAVQMAGFT----LEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAG 306 (429)
Q Consensus 231 ~~~l~l~G~hn~~Na~~Aiaa~~~lg~~----i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~ 306 (429)
...++++|.||++|+++|++++..++.. .+...+..||+.++||||||.+...| .+++||||||+|+
T Consensus 251 ~~~~~l~G~~~~~N~~~aia~~~~~~~~~~~~~~~~~i~~~l~~~~~~gR~e~i~~~~---------~iivD~AHnp~a~ 321 (428)
T 1jbw_A 251 DLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASHWPARLEKISDTP---------LIVIDGAHNPDGI 321 (428)
T ss_dssp EEEESCCSTHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCCCTTSSEEEETTT---------TEEEECCCSHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCC---------EEEEECCCCHHHH
T ss_conf 3577875356888899999999998652101014788763430356687567852663---------7999668899999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 98886543311477771243113467989899999888638889998422889984212789899999998549978996
Q gi|254780821|r 307 LVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMAC 386 (429)
Q Consensus 307 ~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 386 (429)
++++++++.+. .+++++|||+++|||..+|++.+.+.+|.++.++. +.++ +..+.+. .+. ..+....
T Consensus 322 ~~~l~~l~~~~---~~k~~~V~G~~gdkD~~~~~~~~~~~~d~v~i~~~---~~~~--r~~~~~~-~~~----~~~~~~~ 388 (428)
T 1jbw_A 322 NGLITALKQLF---SQPITVIAGILADKDYAAMADRLTAAFSTVYLVPV---PGTP--RALPEAG-YEA----LHEGRLK 388 (428)
T ss_dssp HHHHHHHHHHC---SSCCEEEEECSSSTTHHHHHHHHHHHCSEEEECCC---SCC----------------------CBC
T ss_pred HHHHHHHHHHC---CCCCEEEEEECCCCCHHHHHHHHHHHCCEEEEECC---CCCC--CCCCHHH-HHH----HHCCCCC
T ss_conf 99999999733---99845998531797999999998855799999999---9996--6470999-987----6217645
Q ss_pred CCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHC
Q ss_conf 99899999999860358867999949779999999987
Q gi|254780821|r 387 SSMIEALSRVRKINEELPPPLILIAGSLYLAGEALREN 424 (429)
Q Consensus 387 ~~~~eAi~~a~~~~~~~~~d~VLV~GS~ylvge~l~~~ 424 (429)
+++++|++.+.+.. ++|.|||+||||||||+++.+
T Consensus 389 ~~~~eAi~~a~~~~---~~d~ilI~GS~yl~g~v~~~l 423 (428)
T 1jbw_A 389 DSWQEALAASLNDV---PDQPIVITGSLYLASAVRQTL 423 (428)
T ss_dssp SSHHHHHHHHHHHC---TTSCEEEEESHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHC---CCCCEEEECHHHHHHHHHHHH
T ss_conf 88999999999748---999699976799999999998
No 5
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=0 Score=521.52 Aligned_cols=384 Identities=26% Similarity=0.382 Sum_probs=321.3
Q ss_pred CHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHH
Q ss_conf 88999999987299588359839994589847999999999999789351413784110120089888477871558899
Q gi|254780821|r 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVE 84 (429)
Q Consensus 5 ~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~ 84 (429)
+|+||++++++|||||.++ |||+||||||||||++|+++||+++|++||+||||||.+++|||+++ +.++++..
T Consensus 31 ~l~r~~~~~~~l~~p~~~~-~vI~VTGTNGKTTT~~li~~iL~~~G~~vg~~~sp~l~~~~eri~~~-----~~~i~~~~ 104 (422)
T 1w78_A 31 GLERVSLVAARLGVLKPAP-FVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQ-----GQELPESA 104 (422)
T ss_dssp CSHHHHHHHHHHTCSSCSS-EEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEET-----TEECCHHH
T ss_pred CHHHHHHHHHHCCCCCCCC-CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEC-----CEECCHHH
T ss_conf 8699999999749962159-88999888218999999999999889988997987726044238999-----87435687
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHH
Q ss_conf 99999998630477677957899999998741144624777644475676413567751589860250000002785234
Q gi|254780821|r 85 LLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSA 164 (429)
Q Consensus 85 ~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~ 164 (429)
+...............+++||+++.+|+.+|.+.++|++++|+|+||++|.+|.+.. +++++|||+.||+++||++++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~d~~~~e~~~~~~~d~~~~~~~-~~~~~t~i~~dH~d~l~~~~~~ 183 (422)
T 1w78_A 105 HTASFAEIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDA-DVAVVTSIALDHTDWLGPDRES 183 (422)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSSTTSGGGGSCC-SEEEECCCCSCCHHHHCSSHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCCC-CCEECCCCCHHHHHHHCCHHHH
T ss_conf 665778888873378875678999999999876599879984463776364222111-3200045521166642537677
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 45666531137983315444717898899998621056652357632101258524443103333444444322221111
Q gi|254780821|r 165 IAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYIN 244 (429)
Q Consensus 165 Ia~eKa~I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~N 244 (429)
|+.+|+++++++.+.+.+.+... .+....+.+.++........+..........+.+.........++++|.||+.|
T Consensus 184 i~~~k~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~n 260 (422)
T 1w78_A 184 IGREKAGIFRSEKPAIVGEPEMP---STIADVAQEKGALLQRRGVEWNYSVTDHDWAFSDAHGTLENLPLPLVPQPNAAT 260 (422)
T ss_dssp HHHHHGGGCCTTSEEEECCSSCC---HHHHHHHHHHTCEEEEBTTTBEEEECSSCEEEEETTEEEEEECCCSSCHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHCCCHH---HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 89998754316885300100036---677888887645777765541021002443234654542222224567778999
Q ss_pred HHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 14699998753200001100112222336653035422875444578745999336321579988865433114777712
Q gi|254780821|r 245 AATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPF 324 (429)
Q Consensus 245 a~~Aiaa~~~lg~~i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i 324 (429)
|++|++ .++..++.+.|+.++....||||||.+..+ .++|+||||||+|+++++++++.+. ..+++
T Consensus 261 Alaa~~---~~~~~~~~~~I~~~~~~~~~~gR~e~l~~~---------~~viiD~AHNp~a~~a~l~~l~~~~--~~~~i 326 (422)
T 1w78_A 261 ALAALR---ASGLEVSENAIRDGIASAILPGRFQIVSES---------PRVIFDVAHNPHAAEYLTGRMKALP--KNGRV 326 (422)
T ss_dssp HHHHHH---HHTCCCCHHHHHHHHHHCCCTTSSEEEETT---------TEEEEECCCSHHHHHHHHHHHHHSC--SCSCE
T ss_pred HHHHHH---HHCCCCCHHHHHHHHCCCCCCCCEEEECCC---------CEEEEECCCCHHHHHHHHHHHHHHC--CCCCE
T ss_conf 999999---827886789998741234556731696148---------7499976889899999998535542--58753
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCC
Q ss_conf 43113467989899999888638889998422889984212789899999998549978996998999999998603588
Q gi|254780821|r 325 YLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELP 404 (429)
Q Consensus 325 ~~I~G~~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~ 404 (429)
++|+|+.+|||..++++.+.+..+.++.+.. + .+++.+++++.+... +...++++++|++.|.+.+ ++
T Consensus 327 i~i~G~~~dkd~~~~~~~~~~~~~~iii~~~---~---~~r~~~~~~i~~~~~----~~~~~~~~~eAi~~a~~~a--~~ 394 (422)
T 1w78_A 327 LAVIGMLHDKDIAGTLAWLKSVVDDWYCAPL---E---GPRGATAEQLLEHLG----NGKSFDSVAQAWDAAMADA--KA 394 (422)
T ss_dssp EEEECCBTTSCHHHHHHHHHTTCSEEEECCC---C---SSSBCCHHHHHHHHS----SCEECSSHHHHHHHHHHHC--CT
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCEEEEECC---C---CCCCCCHHHHHHHHC----CCCCCCCHHHHHHHHHHHC--CC
T ss_conf 7821555786899999998865699999899---9---977799999999852----1874699999999999857--99
Q ss_pred CCEEEEECCHHHHHHHHHHC
Q ss_conf 67999949779999999987
Q gi|254780821|r 405 PPLILIAGSLYLAGEALREN 424 (429)
Q Consensus 405 ~d~VLV~GS~ylvge~l~~~ 424 (429)
+|+|||+|||||+||+|+.+
T Consensus 395 ~d~VLI~GS~yl~g~vl~~l 414 (422)
T 1w78_A 395 EDTVLVCGSFHTVAHVMEVI 414 (422)
T ss_dssp TCEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEECHHHHHHHHHHHH
T ss_conf 88799954699999999999
No 6
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=346.79 Aligned_cols=360 Identities=19% Similarity=0.207 Sum_probs=248.0
Q ss_pred CCCCHHHHHHHHHH-CCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEEC
Q ss_conf 77888999999987-29958835983999458984799999999999978935141378411012008988847787155
Q gi|254780821|r 2 AADSLLKMGYLLED-LGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLV 80 (429)
Q Consensus 2 ~~~~l~r~~~ll~~-lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i 80 (429)
..|++.-+..|..+ .|+|+.++ +|||||||||||||+.|++++|+++|+++++++||++..+.+++... ....
T Consensus 124 v~d~~~aL~~la~~~~~~p~~~l-~vI~VTGTnGKTTT~~~l~~iL~~~G~~~~~~~s~~~~~~~~~~~~~-----~t~~ 197 (535)
T 2wtz_A 124 HPAPRGVLGGLAATVYGHPSERL-TVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSA-----LTTP 197 (535)
T ss_dssp CSSSHHHHHHHHHHHTTCGGGSS-EEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCS-----SSSC
T ss_pred ECCHHHHHHHHHHHHHCCHHHCC-EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCC-----CCCC
T ss_conf 89899999999999864810078-19999699988999999999998539740124773123037511556-----7885
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH----HHHHHHCCCCCCCEEEEEECCCHHCC
Q ss_conf 88999999999863047767795789999999874114462477764447----56764135677515898602500000
Q gi|254780821|r 81 EDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG----GSLDATNIIEKVAVSVITSISLDHEK 156 (429)
Q Consensus 81 ~~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG----Gr~DaTnvi~~~~vavITnI~~DHle 156 (429)
....+. ..+..+.+.++...++|+..- +|.| ...|+++++|||+.||++
T Consensus 198 ~~~~l~-----------------------~~~~~~~e~g~~~~~~e~~~~~~~~~r~~----~~~~~v~vitni~~~Hl~ 250 (535)
T 2wtz_A 198 EAPTLQ-----------------------AMLAAMVERGVDTVVMEVSSHALALGRVD----GTRFAVGAFTNLSRDHLD 250 (535)
T ss_dssp CHHHHH-----------------------HHHHHHHHTTCCEEEEECCHHHHHTTTTT----TCCEEEEEECCCCSCCTT
T ss_pred CHHHHH-----------------------HHHHHHHHCCCCEEEEEECHHHHHHCCCC----CCCCEEEEEECCCHHHHH
T ss_conf 415667-----------------------66666650698658997121167752433----356408999656278865
Q ss_pred CCCCCHHHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHHHHHHHCCCCCC-CCCCCCCC-----CCC-CCEEEEEE
Q ss_conf 02785234456665311379-----83315444717898899998621056652-35763210-----125-85244431
Q gi|254780821|r 157 ILGNTVSAIAKDKSGIIKPG-----CPVVIGHQVYDEVREILVSKAEKMGCPYN-VYGDDFYA-----FEK-NKCLVYQD 224 (429)
Q Consensus 157 ~LG~tle~Ia~eKa~I~k~~-----~~~v~~~~~~~~~~~~i~~~a~~~~~~~~-~~~~~~~~-----~~~-~~~~~~~~ 224 (429)
++| +++.++.+|+.++.+. ...+++.+ ++....+. ........... ....++.. ... ...+....
T Consensus 251 ~~~-~~e~~~~~K~~lf~~~~~~~~~~~v~n~~-d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (535)
T 2wtz_A 251 FHP-SMADYFEAKASLFDPDSALRARTAVVCID-DDAGRAMA-ARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAID 327 (535)
T ss_dssp TSS-SHHHHHHHHHTTTCTTSTTCCSEEEEECS-SHHHHHHH-HHHSSCEEEESSSSCCSEEEEEEEEETTTEEEEEEEC
T ss_pred HCC-CHHHHHHHHHHHHHCCCCCCCCEEEEECC-HHHHHHHH-HHCCCCCEEECCCCCCHHHHHHHCCCCCCCCEEECCC
T ss_conf 237-56765444332110024445753899255-08899997-6303441122146630023332022235761122035
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHH
Q ss_conf 03333444444322221111146999987532000011001122223366530354228754445787459993363215
Q gi|254780821|r 225 KISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 (429)
Q Consensus 225 ~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~ 304 (429)
..+......++|+|.||++|+++|++++..+|+ +.+.|.++|.+++||||||.+..+ .+..+++||+|||+
T Consensus 328 ~~g~~~~i~l~l~G~hnv~NalaAia~a~~lgi--~~~~i~~~L~~~~~~gR~e~i~~~-------~~~~i~~dya~np~ 398 (535)
T 2wtz_A 328 PAGVGHHIGIRLPGRYNVANCLVALAILDTVGV--SPEQAVPGLREIRVPGRLEQIDRG-------QGFLALVDYAHKPE 398 (535)
T ss_dssp TTSCEEEEEESCCSHHHHHHHHHHHHHHHHTTC--CHHHHHHHHTTCCCTTSSEECCSS-------CSSEEEEECCCSHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHCCCCCCEEEEEEC-------CCCEEEEECCCCHH
T ss_conf 543102443225672157779999999987499--999999999869986738999851-------89689996799969
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCH---HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC--
Q ss_conf 79988865433114777712431134679898---9999988863888999842288998421278989999999854--
Q gi|254780821|r 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKY---GRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKL-- 379 (429)
Q Consensus 305 s~~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~---~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 379 (429)
++.+.+..+.. ..+++++|||+++|||. ..|.+...+.+|.++++...++...+.. ..+++.+.+.+.
T Consensus 399 ~~~~~l~~~~~----~~~r~~~Vlg~~gd~~~~~~~~~~~~a~~~ad~vi~t~~~pr~e~~~~---i~~~i~~~~~~~~~ 471 (535)
T 2wtz_A 399 ALRSVLTTLAH----PDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTA---IRREILAGAAEVGG 471 (535)
T ss_dssp HHHHHHHTTCC----SSSCEEEEECCCTTSCGGGHHHHHHHHHHHCSEEEECCSCCTTSCHHH---HHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHH----HCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHH---HHHHHHHHHHHHCC
T ss_conf 99999999764----159967997877887577899999999962999999987767579899---99999987897479
Q ss_pred CCCEEEECCHHHHHHHHHHHCCCCCCCEEEEECCHH
Q ss_conf 997899699899999999860358867999949779
Q gi|254780821|r 380 GFQAMACSSMIEALSRVRKINEELPPPLILIAGSLY 415 (429)
Q Consensus 380 ~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~y 415 (429)
..++..++++++|++.+.+.+ +++|+|||+|+.+
T Consensus 472 ~~~v~~~~d~~eAi~~a~~~a--~~gDvVLv~G~Gh 505 (535)
T 2wtz_A 472 DAQVVEIADRRDAIRHAVAWA--RPGDVVLIAGKGH 505 (535)
T ss_dssp CCEEEECCSHHHHHHHHHHHC--CTTCEEEEESCTT
T ss_pred CCCEEEECCHHHHHHHHHHHC--CCCCEEEECCCCC
T ss_conf 988899599999999999838--9999999837888
No 7
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=0 Score=331.30 Aligned_cols=356 Identities=17% Similarity=0.126 Sum_probs=242.6
Q ss_pred CCCHHHHHHHHHH-CCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECC
Q ss_conf 7888999999987-299588359839994589847999999999999789351413784110120089888477871558
Q gi|254780821|r 3 ADSLLKMGYLLED-LGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVE 81 (429)
Q Consensus 3 ~~~l~r~~~ll~~-lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~ 81 (429)
+|+++.|..|..+ +++|+.++ ++|+||||||||||+.|++++|++.|++++.++|+......+.+..+
T Consensus 87 ~d~~~aL~~la~~~~~~~~~~~-~vIgITGSnGKTTT~~~l~~iL~~~~~~~~~~g~~~~~~~~~~~~~~---------- 155 (498)
T 1e8c_A 87 SQLNERLSALAGRFYHEPSDNL-RLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTE---------- 155 (498)
T ss_dssp TTHHHHHHHHHHHHTTCGGGSS-EEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCS----------
T ss_pred CCHHHHHHHHHHHHHCCCCCCC-CEEEEECCCCCCCEEECCHHHHHHCCCCCEECCCEECCCCCCCCCCC----------
T ss_conf 9999999999999855733367-18999789998000646000455437530002540013475224557----------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCC
Q ss_conf 89999999998630477677957899999998741144624777644475676413567751589860250000002785
Q gi|254780821|r 82 DVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNT 161 (429)
Q Consensus 82 ~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~t 161 (429)
......+..++ .|..+.+++++++++|+...|..+..--+-+|+++|||||+.||++++| +
T Consensus 156 ----------------~~~~~~~~~~~--~l~~~~~~~~~~~~~e~s~~g~~~~~~~~~~p~iaviTNI~~dHl~~~g-s 216 (498)
T 1e8c_A 156 ----------------NTTGSAVDVQH--ELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHG-D 216 (498)
T ss_dssp ----------------SSSCCHHHHHH--HHHHHHHTTCCEEEEECCHHHHHTTTTTTCBCSEEEECCCCSCCHHHHS-S
T ss_pred ----------------CCCCCHHHHHH--HHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCEEEEECCCHHHCCCCC-C
T ss_conf ----------------87873567899--9999885699299990698364556407688888999489778767568-8
Q ss_pred HHHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-------CCCCCC-----CCCCCEEEEEECCC
Q ss_conf 2344566653113--798331544471789889999862105665235-------763210-----12585244431033
Q gi|254780821|r 162 VSAIAKDKSGIIK--PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVY-------GDDFYA-----FEKNKCLVYQDKIS 227 (429)
Q Consensus 162 le~Ia~eKa~I~k--~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~-------~~~~~~-----~~~~~~~~~~~~~~ 227 (429)
++.++.+|..++. +...+|++.+ ++....+. ++..+........ +.++.. ......+.+.. ..
T Consensus 217 ~e~~~~aK~~i~~~~~~g~~vln~D-d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 293 (498)
T 1e8c_A 217 MEHYEAAKWLLYSEHHCGQAIINAD-DEVGRRWL-AKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSS-SW 293 (498)
T ss_dssp HHHHHHHHHHHHHTSBCCEEEEETT-SHHHHHHH-TTCTTCEEEESSSCCCTTTCSEEEEEEEEEECSSCEEEEEEE-TT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHH-HHCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEECC-CC
T ss_conf 3676778888653036772899358-67887777-650462588631456754334200002465226652011004-67
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHH
Q ss_conf 334444443222211111469999875320000110011222233-6653035422875444578745999336321579
Q gi|254780821|r 228 QTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAG 306 (429)
Q Consensus 228 ~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~ 306 (429)
....+.++++|.||++|+++|++++..+|.++ +.|.++++++. .+||||.+.. .++..+++||+|||+|+
T Consensus 294 ~~~~i~l~l~G~hnv~NalaAia~a~~lg~~~--~~i~~~l~~~~~~~gR~e~~~~-------~~~~~iidDy~~np~s~ 364 (498)
T 1e8c_A 294 GDGEIESHLMGAFNVSNLLLALATLLALGYPL--ADLLKTAARLQPVCGRMEVFTA-------PGKPTVVVDYAHTPDAL 364 (498)
T ss_dssp CCEEEEECSCSHHHHHHHHHHHHHHHHTTCCH--HHHHHHGGGCCCCTTSSEEECC-------TTSCEEEEECCCSHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHCCCCCCCEEEEEE-------CCCEEEEEECCCCHHHH
T ss_conf 64368875127379999999999997622125--8999999745898997289993-------89549999427992999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCC--HH-HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC---
Q ss_conf 98886543311477771243113467989--89-9999888638889998422889984212789899999998549---
Q gi|254780821|r 307 LVVSKEISKLKGSSNKPFYLVIGMVEGKK--YG-RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG--- 380 (429)
Q Consensus 307 ~~l~~~l~~l~~~~~~~i~~I~G~~~dKd--~~-~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 380 (429)
+++++.+.... .+|+++|+|++++++ .. .+.+.....+|.++.+...++ ...+..+.+.+.+..
T Consensus 365 ~a~l~~l~~~~---~~rii~v~g~~g~~~~~~~~~~~~~a~~~~d~vilt~~~~~-------~e~~~~i~~~~~~~~~~~ 434 (498)
T 1e8c_A 365 EKALQAARLHC---AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPR-------TEEPRAIINDILAGMLDA 434 (498)
T ss_dssp HHHHHHHHHTC---SSCEEEEECCCSSSCSTHHHHHHHHHHHHCSEEEECCSCCB-------TSCHHHHHHHHHTTSSCG
T ss_pred HHHHHHHHHHC---CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCC-------CCCHHHHHHHHHHCCCCC
T ss_conf 99999988656---99889998876666521558999999855999999987878-------779899999998567677
Q ss_pred CCEEEECCHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 97899699899999999860358867999949
Q gi|254780821|r 381 FQAMACSSMIEALSRVRKINEELPPPLILIAG 412 (429)
Q Consensus 381 ~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~G 412 (429)
.++..++++++|++.+.+.+ +++|+|||+|
T Consensus 435 ~~~~~~~d~~eAi~~a~~~a--~~gDvVLi~G 464 (498)
T 1e8c_A 435 GHAKVMEGRAEAVTCAVMQA--KENDVVLVAG 464 (498)
T ss_dssp GGSEECSCHHHHHHHHHHHS--CTTCEEEEES
T ss_pred CCEEEECCHHHHHHHHHHHC--CCCCEEEEEC
T ss_conf 88799689999999999848--9989999947
No 8
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=0 Score=312.92 Aligned_cols=353 Identities=17% Similarity=0.129 Sum_probs=219.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795
Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429)
Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429)
.++|+||||||||||++|++++|+.+|++++.++ ++.... ......+.... ..........
T Consensus 122 ~~vI~VTGTnGKTTTt~mi~~iL~~~g~~~~~~i-------------Gg~~~~--~~~~~~~~~~~--~~~~~~~~~~-- 182 (524)
T 3hn7_A 122 RHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLI-------------GGVPLV--NTTDTNLQQVF--AHSSYLGTEK-- 182 (524)
T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEEC-------------SCCBCC--CSSCHHHHHHT--TSSEECCCCC--
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEE-------------CCCCCC--CCCCCCCCCCC--CCCHHHHHHH--
T ss_conf 8289997888825389999999997299862997-------------570345--77664335677--8733430134--
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHH----HHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CC
Q ss_conf 789999999874114462477764447----56764135677515898602500000027852344566653113---79
Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLG----GSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PG 176 (429)
Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlG----Gr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~ 176 (429)
.......+.|++|+|+.-- +..-.....-+|+++|||||++||+|++| |+++++.+|..+++ ++
T Consensus 183 --------~~~~~~~~~~~~V~E~~e~~~s~~~~~~~~~~~~p~iaviTNI~~DHLd~~~-s~e~~~~ak~~i~~~~~~~ 253 (524)
T 3hn7_A 183 --------DDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFA-DLDAIQTQFHHMVRMIPST 253 (524)
T ss_dssp --------CSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC-------CHHHHHHHHHHHHTTSCTT
T ss_pred --------HHHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHH-HHHHHHHHHHHHHHCCCCC
T ss_conf --------4554024688799998444301455200014446768999747786732333-0355566777787428878
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH-----------------CCCCCCCCC----CCCCC---CCCCCEEEEE--ECCCCCC
Q ss_conf 83315444717898899998621-----------------056652357----63210---1258524443--1033334
Q gi|254780821|r 177 CPVVIGHQVYDEVREILVSKAEK-----------------MGCPYNVYG----DDFYA---FEKNKCLVYQ--DKISQTN 230 (429)
Q Consensus 177 ~~~v~~~~~~~~~~~~i~~~a~~-----------------~~~~~~~~~----~~~~~---~~~~~~~~~~--~~~~~~~ 230 (429)
..+|++.+ ++.+.+.+.+.+.. ...+...++ .++.. ...+..+.+. +......
T Consensus 254 g~~V~n~d-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~ 332 (524)
T 3hn7_A 254 GKIIMPAA-TISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFTVSFNDNKEATA 332 (524)
T ss_dssp SEEEEESS-CHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred CCEEECCC-HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCEEE
T ss_conf 85475340-45699999987643103431111011111134653022035546549999998548713564311564047
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHH
Q ss_conf 444443222211111469999875320000110011222233-6653035422875444578745999336321579988
Q gi|254780821|r 231 LTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVV 309 (429)
Q Consensus 231 ~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l 309 (429)
...++++|.||++|+++|++++..+|+ +.+.|+++|++++ .|||||++.. .++..++.||||||++++++
T Consensus 333 ~~~l~l~G~hNv~NalaAia~a~~lGi--~~~~i~~~L~~f~g~~~R~e~i~~-------~~~~~viDDYahnP~si~a~ 403 (524)
T 3hn7_A 333 LVNWSMSGLHNVNNALVAIAAAYNIGV--SVKTACAALSAFAGIKRRMELIGD-------VNDILVFDDFAHHPTAITTT 403 (524)
T ss_dssp EEECSCCSHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHTCCCBTTSSEEEEE-------ETTEEEEEECCCSHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCC--CHHEEEECCCCCCCCHHHHEEEEE-------CCCCEEEEECCCCHHHHHHH
T ss_conf 898357771999999999999997199--604022200046773324035640-------47815997347998999999
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCC---C-CHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHH---HHCCCC
Q ss_conf 865433114777712431134679---8-989999988863888999842288998421278989999999---854997
Q gi|254780821|r 310 SKEISKLKGSSNKPFYLVIGMVEG---K-KYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEA---KKLGFQ 382 (429)
Q Consensus 310 ~~~l~~l~~~~~~~i~~I~G~~~d---K-d~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~ 382 (429)
++.++... +.+++++||+..+. + ...+.+......+|.++........ ..+....... .....+
T Consensus 404 l~al~~~~--~~~rii~v~~~~~~s~~~~~~~~~~~~~~~~aD~vi~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 474 (524)
T 3hn7_A 404 LDGAKKKL--ADRRLWAIIEPRSNTMKMGIHQDSLAQSATLADHTLWYEPTGLE-------WGLKEVIDNATIANPSIGS 474 (524)
T ss_dssp HHHHHHHH--TTSCEEEEEECCCCSSCCSCCTTHHHHHTTTSSEEEEECCTTCC-------CSHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHHC--CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCC-------CCHHHHHHHHHHHCCCCCC
T ss_conf 99999766--99859999888998421346689999999749999997888766-------4878788799874345788
Q ss_pred EEEECCHHHHHHHHHHHCCCCCCCEEEE--ECCHHHHHH-HHHHCC
Q ss_conf 8996998999999998603588679999--497799999-999879
Q gi|254780821|r 383 AMACSSMIEALSRVRKINEELPPPLILI--AGSLYLAGE-ALRENG 425 (429)
Q Consensus 383 ~~~~~~~~eAi~~a~~~~~~~~~d~VLV--~GS~ylvge-~l~~~g 425 (429)
...++++++|++.+.+.+ +++|+||+ +||++-+++ ++..++
T Consensus 475 ~~~~~~~~eai~~~~~~a--~~gDiVLi~G~G~~~~i~~~ll~~L~ 518 (524)
T 3hn7_A 475 QQVLSSVDDIIKHICTHA--KAGDAIVIMSNGGFEGIHQRLLTALG 518 (524)
T ss_dssp EEEESCHHHHHHHHHHHC--CTTCEEEEEESSCGGGHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 499899999999999857--99899999879976589999999873
No 9
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=0 Score=306.63 Aligned_cols=328 Identities=15% Similarity=0.084 Sum_probs=215.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429)
++|+||||||||||+.|++++|+.+|++++.+... . +..++ ..
T Consensus 115 ~~IaITGTnGKTTTt~ml~~iL~~~g~~~~~~~~~--------------~--~~~~~----------------~~----- 157 (469)
T 1j6u_A 115 EEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGG--------------I--MDSLE----------------HG----- 157 (469)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSS--------------C--CTTST----------------TS-----
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCCEEECCC--------------C--CCCCC----------------CH-----
T ss_conf 67999689961469999999860545454120376--------------5--56421----------------00-----
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444
Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429)
Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429)
......++.|+|++.- +..-..-+|+++|||||++||+|++|++++.+...|..+++.+..++...+
T Consensus 158 ----------~~~~~~~~~V~E~~~~---~~~~~~~~p~iavitNI~~DHld~~~~~~~~~~~~~~~i~~~~~~~~~~~d 224 (469)
T 1j6u_A 158 ----------NYEKGNGPVVYELDES---EEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVVTFAE 224 (469)
T ss_dssp ----------SEECCSSCEEEEECTT---SGGGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCSEEEEETT
T ss_pred ----------HCCCCCCEEEEECCCC---CCCCCEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf ----------0036996079964432---121100068889980673653244242268899999987516881154122
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHC
Q ss_conf 71789889999862105665235763210125852444310333344444432222111114699998753200001100
Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECI 264 (429)
Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I 264 (429)
++ ...................... ......................++++|.||++|+++|++++..+|+ +.+.|
T Consensus 225 -d~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~G~hNv~NalaAia~a~~~Gi--~~~~i 299 (469)
T 1j6u_A 225 -DE-LTSHLGDVTFGVKKGTYTLEMR-SASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGY--DLAPV 299 (469)
T ss_dssp -CT-TTGGGCSEEECSSSSSEEEEEE-EECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHTTC--CHHHH
T ss_pred -HH-HHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCC--CHHHH
T ss_conf -05-5655543022222343111221-1223454047750586202557720138889889999999998299--99999
Q ss_pred CCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC---CHHHHH
Q ss_conf 11222233-66530354228754445787459993363215799888654331147777124311346798---989999
Q gi|254780821|r 265 NAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGK---KYGRYL 340 (429)
Q Consensus 265 ~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~~dK---d~~~~l 340 (429)
.++|+++. .|||||.+...+ ..+..+++||||||+|++++++.++... +++++++||+..++. +...++
T Consensus 300 ~~~l~~f~gv~~R~e~v~~~~-----~~~i~vidDYAHnP~ai~a~l~~l~~~~--~~~~ii~vf~~~~~~r~~~~~~~~ 372 (469)
T 1j6u_A 300 LEALEEFRGVHRRFSIAFHDP-----ETNIYVIDDYAHTPDEIRNLLQTAKEVF--ENEKIVVIFQPHRYSRLEREDGNF 372 (469)
T ss_dssp HHHHHHCCCCTTSSEEEEEET-----TTTEEEEEECCCSHHHHHHHHHHHHHHC--SSSEEEEEECCBC--------CHH
T ss_pred HHHHHCCCCCCCCEEEEEECC-----CCCCEEEEECCCCHHHHHHHHHHHHHHC--CCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 988750478788447998628-----8883466404689899999999999765--898289999798886467778999
Q ss_pred HHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEE--CCHHHHH
Q ss_conf 98886388899984228899842127898999999985499789969989999999986035886799994--9779999
Q gi|254780821|r 341 EAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIA--GSLYLAG 418 (429)
Q Consensus 341 ~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~--GS~ylvg 418 (429)
....+.+|.++.+.+++..+.+. .....+.+.+.++..+.+...+++.+++.+ +. ..+++|+||++ ||++..+
T Consensus 373 ~~a~~~aD~vilt~~~~~~E~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~i~~-~l---~~~~gDiVL~~GaGdi~~~~ 447 (469)
T 1j6u_A 373 AKALQLADEVVVTEVYDAFEEKK-NGISGKMIWDSLKSLGKEAYFVEKLPELEK-VI---SVSENTVFLFVGAGDIIYSS 447 (469)
T ss_dssp HHHHTTSSEEEECCCBC----------CHHHHHHHHHHTTCCEEECCSGGGHHH-HC---CCCSSEEEEEECSSTHHHHH
T ss_pred HHHHHCCCEEEECCCCCCCCCCC-CCCCHHHHHHHHHHCCCCEEECCCHHHHHH-HH---HCCCCCEEEEECCCCHHHHH
T ss_conf 99997099999999889988754-587899999999846998598099999999-98---57997999995699989999
Q ss_pred H
Q ss_conf 9
Q gi|254780821|r 419 E 419 (429)
Q Consensus 419 e 419 (429)
.
T Consensus 448 ~ 448 (469)
T 1j6u_A 448 R 448 (469)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 10
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.4e-45 Score=301.28 Aligned_cols=340 Identities=18% Similarity=0.167 Sum_probs=223.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795
Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429)
Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429)
+++|+||||||||||+.|++++|+++|++++.+. |+. +.+.. . .
T Consensus 119 ~~~iaVTGTnGKTTtt~ml~~iL~~~g~~~~~~~-------------g~~---~~~~~-------------~--~----- 162 (491)
T 2f00_A 119 RHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVN-------------GGL---VKAAG-------------V--H----- 162 (491)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEE-------------EEE---ETTTT-------------E--E-----
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE-------------CCC---CCCHH-------------H--H-----
T ss_conf 7279994567823299999999997599937997-------------164---45024-------------4--2-----
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCC
Q ss_conf 78999999987411446247776444756764135677515898602500000027852344566653113---798331
Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVV 180 (429)
Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v 180 (429)
....+-+++|+|+.- +|.+-.--+|+++|||||++||+|+++.|+|+++..|..|++ ++..+|
T Consensus 163 -----------~~~~~~~~~V~E~s~---~~~~~~~~~p~iavitNi~~DHld~~~~~~e~y~~~k~~i~~~~~~~~~~i 228 (491)
T 2f00_A 163 -----------ARLGHGRYLIAEADE---SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAV 228 (491)
T ss_dssp -----------EECCSSSEEEEECCC---TTSGGGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred -----------HCCCCCCEEEEEECC---CCCCHHCCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf -----------025899889999766---401301148989999778667751206889999999999996699588899
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC---------CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 544471789889999862105665235763210---------12585244431033334444443222211111469999
Q gi|254780821|r 181 IGHQVYDEVREILVSKAEKMGCPYNVYGDDFYA---------FEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICA 251 (429)
Q Consensus 181 ~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa 251 (429)
++.+ ++.+.+ .+.........++..... ......+.............++++|.||++|+++|+++
T Consensus 229 ~n~d-d~~~~~----~~~~~~~~v~tfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAAia~ 303 (491)
T 2f00_A 229 MCVD-DPVIRE----LLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAV 303 (491)
T ss_dssp EETT-SHHHHH----HGGGCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHH
T ss_pred EECC-CHHHHH----HHHHCCCCEEEEECCCCCCEECCCHHHCCCCCCEEEECCCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 9798-889999----98754886378600111110012211125665201101234331221035672015349999999
Q ss_pred HHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCC--CCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 875320000110011222233-665303542287544--45787459993363215799888654331147777124311
Q gi|254780821|r 252 VQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLN--KLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVI 328 (429)
Q Consensus 252 ~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~--~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~ 328 (429)
+..+| ++.+.|.++|.++. .|+|||.+....... ...+...++.||||||++++++++.++... +.+++++++
T Consensus 304 a~~lG--i~~e~I~~aL~~F~g~~~R~E~vg~~~~~~~~~~~~~~~i~DdyahnP~si~a~l~al~~~~--~~~~ii~i~ 379 (491)
T 2f00_A 304 ATEEG--IDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGW--PDKNLVMLF 379 (491)
T ss_dssp HHHHT--CCHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEECCCSHHHHHHHHHHHHTTC--CSSEEEEEE
T ss_pred HHHCC--CCHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEEE
T ss_conf 99859--95788776654047887414899874212342378978999846789589999999999658--997699997
Q ss_pred CCCCCC----CHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHCCCC
Q ss_conf 346798----9899999888638889998422889984212789899999998549-97899699899999999860358
Q gi|254780821|r 329 GMVEGK----KYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG-FQAMACSSMIEALSRVRKINEEL 403 (429)
Q Consensus 329 G~~~dK----d~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~eAi~~a~~~~~~~ 403 (429)
+.-.+. -++++.+.+ ..+|.++...+++..+.+ ....+.+.+++.+...+ .++..+++.++|++.+.+.+ +
T Consensus 380 ~~~~~~~~~~~~~e~~~~l-~~aD~vil~~i~~a~e~~-~~g~~~~~l~~~i~~~~~~~~~~~~~~~ea~~~l~~~~--~ 455 (491)
T 2f00_A 380 QPHRFTRTRDLYDDFANVL-TQVDTLLMLEVYPAGEAP-IPGADSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVL--T 455 (491)
T ss_dssp CCBCHHHHTTTHHHHHHHH-TTSSEEEECCCBCSSSCC-CTTSSHHHHTTC-------CCEECCCSSCCHHHHGGGC--C
T ss_pred CCCCCCCHHHHHHHHHHHH-HHCCEEEECCCCCCCCCC-CCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHC--C
T ss_conf 6778724799999999999-869999996666886664-45859999999998559989799799999999999758--9
Q ss_pred CCCEEEEEC--CHHHHHHHHHHCCC
Q ss_conf 867999949--77999999998797
Q gi|254780821|r 404 PPPLILIAG--SLYLAGEALRENGV 426 (429)
Q Consensus 404 ~~d~VLV~G--S~ylvge~l~~~g~ 426 (429)
++|+||++| |++-+.+.|.+.-.
T Consensus 456 ~gDvVL~~Gsg~i~~~~~~l~e~~~ 480 (491)
T 2f00_A 456 GNDLILVQGAGNIGKIARSLAEIKL 480 (491)
T ss_dssp SEEEEEEECSTTHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 9899999889988899999999870
No 11
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=1.6e-43 Score=286.68 Aligned_cols=334 Identities=18% Similarity=0.162 Sum_probs=219.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795
Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429)
Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429)
+++|+||||||||||+.|++++|+++|++++... |+. +.++.. .
T Consensus 118 ~~~iaVTGTnGKTTTt~li~~il~~~g~~~~~~~-------------g~~---~~~~~~---------------~----- 161 (475)
T 1p3d_A 118 RHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVN-------------GGL---VKSAGK---------------N----- 161 (475)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEE-------------EEE---ETTTTE---------------E-----
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE-------------CCC---CCCCCH---------------H-----
T ss_conf 5257886567875179999999997799978998-------------981---465410---------------0-----
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCC
Q ss_conf 78999999987411446247776444756764135677515898602500000027852344566653113---798331
Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVV 180 (429)
Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v 180 (429)
......|+.|+|+.- +|.+-.--+|+++|||||++||+|+++.++|+++..|..|++ ++..+|
T Consensus 162 -----------~~~~~~~~~V~E~s~---~~~~~~~~~p~iavitNI~~DHlD~~~~~~e~y~~~k~~i~~~~~~~~~~i 227 (475)
T 1p3d_A 162 -----------AHLGASRYLIAEADE---SDASFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAV 227 (475)
T ss_dssp -----------EECCSSSEEEEECCC---TTSGGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred -----------CCCCCCCEEEEEECC---CHHHHHHCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf -----------336898728999763---445586359988999678712420106889999999999995699488899
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC---------CCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 5444717898899998621056652357632101---------2585244431033334444443222211111469999
Q gi|254780821|r 181 IGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAF---------EKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICA 251 (429)
Q Consensus 181 ~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa 251 (429)
++.+ ++...... ....+....++.+.... ...................++++|.||++|+++|+++
T Consensus 228 ~n~d-d~~~~~~~----~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAAiav 302 (475)
T 1p3d_A 228 MCAD-DPVLMELV----PKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAV 302 (475)
T ss_dssp EETT-CHHHHHHH----HHHCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHH
T ss_pred EECC-CHHHHHHH----HHHCCCEEEECCCCCCCCCCCCCHHHCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 9688-67887667----863785799525766552211100001465200012444201220046754669999999999
Q ss_pred HHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 875320000110011222233-6653035422875444578745999336321579988865433114777712431134
Q gi|254780821|r 252 VQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGM 330 (429)
Q Consensus 252 ~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~ 330 (429)
+..+|+ +.+.|.++|.++. .|+|||.+.+ .....++..++.||||||++++++++.++... +.+++++++++
T Consensus 303 a~~lGi--~~e~i~~aL~~f~g~~~R~e~~~e---i~~~~~~~~iiDDya~~p~si~a~l~al~~~~--~~~~ii~i~~~ 375 (475)
T 1p3d_A 303 AKEEGI--ANEAILEALADFQGAGRRFDQLGE---FIRPNGKVRLVDDYGHHPTEVGVTIKAAREGW--GDKRIVMIFQP 375 (475)
T ss_dssp HHHTTC--CHHHHHHHHHTCCCBTTSSEEEEE---EEETTEEEEEEEECCCSHHHHHHHHHHHHHHH--CSSCEEEEECC
T ss_pred HHHCCC--CHHHHHHHHHHCCCCCCCCEEEEE---EEECCCCEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEEECC
T ss_conf 998499--999999767643787531106889---99548978999767889799999999998656--99769999547
Q ss_pred CCCCCHHHHHHHH---HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHCCCCCCC
Q ss_conf 6798989999988---8638889998422889984212789899999998549-97899699899999999860358867
Q gi|254780821|r 331 VEGKKYGRYLEAF---VELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG-FQAMACSSMIEALSRVRKINEELPPP 406 (429)
Q Consensus 331 ~~dKd~~~~l~~l---~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~eAi~~a~~~~~~~~~d 406 (429)
.+..+..++.+.+ ...+|.++...+++..... ......+.+.+.+...+ .++..+++.++|++.+.+.. +++|
T Consensus 376 ~~~~~~~~~~~e~~~~l~~~d~vil~~i~~a~e~~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~ea~~~l~~~~--~~gD 452 (475)
T 1p3d_A 376 HRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAP-IVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQII--QDGD 452 (475)
T ss_dssp BCHHHHHHTHHHHHHHHTTSSEEEEECCBCTTCCC-CTTCSHHHHHHHHHHHTSCCCEEESCGGGHHHHHHHHC--CTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCC-CCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHC--CCCC
T ss_conf 77732789999999999849999987766776665-45848999999998608989799699999999999858--9989
Q ss_pred EEEEEC--CHHHHHHHHH
Q ss_conf 999949--7799999999
Q gi|254780821|r 407 LILIAG--SLYLAGEALR 422 (429)
Q Consensus 407 ~VLV~G--S~ylvge~l~ 422 (429)
+||++| |++-+.+.|.
T Consensus 453 vVL~~GsG~i~~~~~~l~ 470 (475)
T 1p3d_A 453 LILAQGAGSVSKISRGLA 470 (475)
T ss_dssp EEEEECSSTHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHH
T ss_conf 999978998899999999
No 12
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A*
Probab=100.00 E-value=0 Score=303.92 Aligned_cols=335 Identities=17% Similarity=0.179 Sum_probs=210.4
Q ss_pred CCCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECC
Q ss_conf 77888999999987299588359839994589847999999999999789351413784110120089888477871558
Q gi|254780821|r 2 AADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVE 81 (429)
Q Consensus 2 ~~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~ 81 (429)
.+|.+.-+.+|.+++ .|+.+. ++|+||||||||||++|++++|+..|.+++.. ++. +..+.
T Consensus 80 V~d~~~al~~la~~~-~~~~~~-~vIgVTGTnGKTTt~~~l~~iL~~~~~~~~~~--------------gn~---~~~~g 140 (454)
T 2am1_A 80 VDDVLTAFQSLASYY-LEKTTV-DVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQ--------------GNY---NNEIG 140 (454)
T ss_dssp CSCHHHHHHHHHHHH-HHHHCC-EEEEEECCCSSSCHHHHHHHHHTTTSCEEECC--------------TTC---CSTTH
T ss_pred ECCHHHHHHHHHHHH-HHCCCC-CEEEEECCCCCCCEEHHHHHHHHHHCCCEECC--------------CCC---CCCCC
T ss_conf 898999999999999-708898-58999425887732027899877616733316--------------876---87767
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHH-HCCCCCCCEEEEEECCCHHCCCC
Q ss_conf 8999999999863047767795789999999874114462477764447--56764-13567751589860250000002
Q gi|254780821|r 82 DVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG--GSLDA-TNIIEKVAVSVITSISLDHEKIL 158 (429)
Q Consensus 82 ~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG--Gr~Da-Tnvi~~~~vavITnI~~DHle~L 158 (429)
.. ++ ..-...+.+++|+|+|.. |..+. +. +-+|+++|||||++||+|++
T Consensus 141 ---~~--------------------~~----~~~~~~~~~~~v~E~~~~~~~~~~~l~~-~~~p~iaviTNI~~dHld~~ 192 (454)
T 2am1_A 141 ---LP--------------------YT----VLHMPEGTEKLVLEMGQDHLGDIHLLSE-LARPKTAIVTLVGEAHLAFF 192 (454)
T ss_dssp ---HH--------------------HH----HHTCCTTCCEEEEECCCSSTTHHHHHHH-HHCCSEEEECCCCCSSCTTC
T ss_pred ---CH--------------------HH----HHHCCCCHHHHHHHHHCCCCHHHHHHHC-CCCCCEEEEECCCHHHHHHH
T ss_conf ---37--------------------88----8734221036788860354213788725-67996899908866765541
Q ss_pred CCCHHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC--CCCCCCCC---CCCCCEEEEEECCCCCC
Q ss_conf 7852344566653113---7983315444717898899998621056652--35763210---12585244431033334
Q gi|254780821|r 159 GNTVSAIAKDKSGIIK---PGCPVVIGHQVYDEVREILVSKAEKMGCPYN--VYGDDFYA---FEKNKCLVYQDKISQTN 230 (429)
Q Consensus 159 G~tle~Ia~eKa~I~k---~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~ 230 (429)
| |+|+|+.+|+.|++ ++..++.++ + +..... ........ ..+.+... ........+.... ...
T Consensus 193 ~-s~e~y~~~K~~lf~~~~~~~~vi~~d-d-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 263 (454)
T 2am1_A 193 K-DRSEIAKGKMQIADGMASGSLLLAPA-D-PIVEDY-----LPIDKKVVRFGQGAELEITDLVERKDSLTFKANF-LEQ 263 (454)
T ss_dssp C-CHHHHHHHHGGGGTTCCTTCEEEEES-C-GGGGGG-----CCSSSEEEEESTTSSBCEEEEEECSSCEEEEETT-CSS
T ss_pred C-CHHHHHHHHHHHHHCCCCCCCEECCC-C-HHHHHH-----HHHCCCCCCCCCCCCEEHHHHHHCCCCCCCCCCC-CCC
T ss_conf 0-06899998888873467545220267-7-899998-----7530233200456420013322034554212454-323
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEE-ECCCCHHHHHH
Q ss_conf 444443222211111469999875320000110011222233-6653035422875444578745999-33632157998
Q gi|254780821|r 231 LTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWI-DGGHNPNAGLV 308 (429)
Q Consensus 231 ~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~vii-D~AHNp~s~~~ 308 (429)
...++++|.||++|+++|++++..+|+ +.+.|.++|.++. .|||||++.. .++..++. ||||||+|+++
T Consensus 264 ~~~~~~~G~~nv~N~laAia~~~~lg~--~~~~i~~~l~~~~~~~~R~e~~~~-------~~~~~iidDsya~nP~s~~~ 334 (454)
T 2am1_A 264 ALDLPVTGKYNATNAMIASYVALQEGV--SEEQIRLAFQHLELTRNRTEWKKA-------ANGADILSDVYNANPTAMKL 334 (454)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHHHTTC--CHHHHHHHGGGCCCCCCCSCEECC-------TTTCEEEEECSCCSHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCC--CHHHEEECCCCCCCCCCCCEEEEC-------CCCCEEEEEECCCCHHHHHH
T ss_conf 433355667899999999999987335--312212001245665530016873-------79926865623699999999
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCC--CCHHHHHHHHH-----HHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC-C
Q ss_conf 8865433114777712431134679--89899999888-----63888999842288998421278989999999854-9
Q gi|254780821|r 309 VSKEISKLKGSSNKPFYLVIGMVEG--KKYGRYLEAFV-----ELSPIVLSVSLICRGRERQSISITPKVLMQEAKKL-G 380 (429)
Q Consensus 309 l~~~l~~l~~~~~~~i~~I~G~~~d--Kd~~~~l~~l~-----~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 380 (429)
++++++.+.....+|+++|+|.+.+ .+....-+.+. ..+|.++++.. .+..+.+..... .
T Consensus 335 aL~~l~~~~~~~~gr~I~VlG~m~e~G~~~~~~h~~i~~~ia~~~~d~vi~~g~------------~~~~~~~~~~~~~~ 402 (454)
T 2am1_A 335 ILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGE------------DIAQLAQLASQMFP 402 (454)
T ss_dssp HHHHHTTSCCCSSCEEEEEEECCCCCCTTHHHHHHHGGGGCCTTTCSEEEEEES------------TTHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHCCCCEEEEECC------------CHHHHHHHHHHHCC
T ss_conf 999998633203786699978620015358999999999999829989999798------------88999999986224
Q ss_pred --C-----CEEEECCHHHHHHHHHHHCCCCCCCEEEEECCHH
Q ss_conf --9-----7899699899999999860358867999949779
Q gi|254780821|r 381 --F-----QAMACSSMIEALSRVRKINEELPPPLILIAGSLY 415 (429)
Q Consensus 381 --~-----~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~y 415 (429)
. ++..++++++|++.+.+.. +++|+||++||-.
T Consensus 403 ~~~~~~~~~~~~~~~~~~ai~~~~~~~--~~gDvVLiKGSr~ 442 (454)
T 2am1_A 403 IGHVYYFKKTEDQDQFEDLVKQVKESL--GAHDQILLKGSNS 442 (454)
T ss_dssp TTCEEEEEBSSSCBTHHHHHHHHHHHC--CTTEEEEEESSCC
T ss_pred CCCCCCCCCCEECCCHHHHHHHHHHHC--CCCCEEEEEECCH
T ss_conf 354114553021278999999999637--9999899983754
No 13
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=2.3e-43 Score=285.69 Aligned_cols=344 Identities=19% Similarity=0.179 Sum_probs=219.5
Q ss_pred CCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCH
Q ss_conf 78889999999872995883598399945898479999999999997893514137841101200898884778715588
Q gi|254780821|r 3 ADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVED 82 (429)
Q Consensus 3 ~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~ 82 (429)
+|+..-|.+|...+- ++.+. ++|+||||||||||+.|++++|+..|.+++...+ .+..+..
T Consensus 81 ~d~~~al~~la~~~~-~~~~~-~vi~ITGT~GKTTt~~~l~~il~~~g~~~~~~~~-----------------~~~~ig~ 141 (452)
T 1gg4_A 81 KDTRLAFGELAAWVR-QQVPA-RVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN-----------------LNNDIGV 141 (452)
T ss_dssp SCHHHHHHHHHHHHH-HHSCC-EEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTT-----------------CCSTTHH
T ss_pred CCHHHHHHHHHHHHH-CCCCC-CEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC-----------------CCCCCCC
T ss_conf 988999999999987-07992-4699971367404456788777765214302357-----------------7887375
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHH-HHHCCCCCCCEEEEEECCCHHCCCCC
Q ss_conf 999999999863047767795789999999874114462477764447--567-64135677515898602500000027
Q gi|254780821|r 83 VELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG--GSL-DATNIIEKVAVSVITSISLDHEKILG 159 (429)
Q Consensus 83 ~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG--Gr~-DaTnvi~~~~vavITnI~~DHle~LG 159 (429)
.. .......+.|++|+|+|.- |.. ..++.+ +|+++|||||++||+|++|
T Consensus 142 ~~---------------------------~~~~~~~~~~~~v~E~~~~~~~~~~~~~~~~-~pdiaviTNI~~dHld~~~ 193 (452)
T 1gg4_A 142 PM---------------------------TLLRLTPEYDYAVIELGANHQGEIAWTVSLT-RPEAALVNNLAAAHLEGFG 193 (452)
T ss_dssp HH---------------------------HHTTCCTTCSEEEEECCCSSSSHHHHHHHHH-CCSEEEECCCC--------
T ss_pred HH---------------------------HHHHCCCCCCEEEEEECCCCCHHHHHHHCCC-CCCEEEEEEECHHHCCCCC
T ss_conf 46---------------------------6643025557289995288660677662456-8878999544055415656
Q ss_pred CCHHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCCC-----CCCCEEEEEECCCC
Q ss_conf 852344566653113---798331544471789889999862105665235---7632101-----25852444310333
Q gi|254780821|r 160 NTVSAIAKDKSGIIK---PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVY---GDDFYAF-----EKNKCLVYQDKISQ 228 (429)
Q Consensus 160 ~tle~Ia~eKa~I~k---~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~ 228 (429)
|+|+++.+|+.+++ ++..++++.++ +......... .......+.. ..|+... ..+..+.......
T Consensus 194 -s~e~y~~aK~~lf~~l~~~~~~i~n~Dd-~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~f~l~~~~~- 269 (452)
T 1gg4_A 194 -SLAGVAKAKGEIFSGLPENGIAIMNADN-NDWLNWQSVI-GSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTG- 269 (452)
T ss_dssp -CHHHHHHHHHGGGGGCCTTCEEEEETTB-CCHHHHHHHH-TTSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTE-
T ss_pred -CHHHHHHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHH-HCCCCEEECCCCCCCCEEEEEEEECCCCCEEEEEECCC-
T ss_conf -2899999999998544425763236787-6888998875-04663154466657756777437707971899995461-
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEE-CCCCHHHH
Q ss_conf 34444443222211111469999875320000110011222233-66530354228754445787459993-36321579
Q gi|254780821|r 229 TNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWID-GGHNPNAG 306 (429)
Q Consensus 229 ~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD-~AHNp~s~ 306 (429)
.....++++|+||++|+++|++++..+|+ +.+.|.++|.+++ .|||||.+... ++..+|.| |+|||+|+
T Consensus 270 ~~~~~~~l~G~hnv~NalaAia~~~~lg~--~~~~i~~~l~~~~~v~~R~~~~~~~-------~~~~~idD~y~~np~s~ 340 (452)
T 1gg4_A 270 SVDVLLPLPGRHNIANALAAAALSMSVGA--TLDAIKAGLANLKAVPGRLFPIQLA-------ENQLLLDDSYNANVGSM 340 (452)
T ss_dssp EEEEEECSSSTHHHHHHHHHHHHHHHTTC--CHHHHHHHHTTCCCCTTSSEEEEEE-------TTEEEEECCSCCCHHHH
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCC--CHHHHHHHHHHCCCCCCHHEEEEEC-------CCCEEEEECCCCCHHHH
T ss_conf 48999725773211408999866655499--8999999987445998311589842-------89579982476897999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCC---CCC---HHHHHHHHHHH-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 98886543311477771243113467---989---89999988863-888999842288998421278989999999854
Q gi|254780821|r 307 LVVSKEISKLKGSSNKPFYLVIGMVE---GKK---YGRYLEAFVEL-SPIVLSVSLICRGRERQSISITPKVLMQEAKKL 379 (429)
Q Consensus 307 ~~l~~~l~~l~~~~~~~i~~I~G~~~---dKd---~~~~l~~l~~~-~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (429)
+++++.+++.. . +.++|+|.+. +++ +.++.+.+... .|.++++- ..++.+.+ .
T Consensus 341 ~a~l~~l~~~~---~-~ki~i~g~~~elG~~~~~~~~~i~~~~~~~~~d~vi~~G------------~~~~~i~~----~ 400 (452)
T 1gg4_A 341 TAAVQVLAEMP---G-YRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVG------------KQSHAIST----A 400 (452)
T ss_dssp HHHHHHHHHSS---S-EEEEEECCCCCCTTHHHHHHHHHHHHHHHHTCSEEEEES------------SSTHHHHH----H
T ss_pred HHHHHHHHHCC---C-CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC------------CCHHHHHH----H
T ss_conf 99999998668---9-839999976878864799999999999857999999978------------28899986----4
Q ss_pred CCCEEEECCHHHHHHHHHHHCCCCCCCEEEEECCH----HHHHHHHHHCCC
Q ss_conf 99789969989999999986035886799994977----999999998797
Q gi|254780821|r 380 GFQAMACSSMIEALSRVRKINEELPPPLILIAGSL----YLAGEALRENGV 426 (429)
Q Consensus 380 ~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~----ylvge~l~~~g~ 426 (429)
......+++++++++.+.+.......++||++||. .-+-+.|++++.
T Consensus 401 ~~~~~~~~~~~~~i~~l~~~~~~~d~~~iL~KGSr~~~le~~v~~L~~~~~ 451 (452)
T 1gg4_A 401 SGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENGT 451 (452)
T ss_dssp TTSCEEESSHHHHHHHHHHHHHHCSSEEEEEECCGGGTTHHHHHHHC----
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf 788706389999999999853369956999914185159999999986289
No 14
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=2.4e-42 Score=279.43 Aligned_cols=310 Identities=18% Similarity=0.233 Sum_probs=205.6
Q ss_pred CCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCC
Q ss_conf 99588359839994589847999999999999789351413784110120089888477871558899999999986304
Q gi|254780821|r 17 GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVK 96 (429)
Q Consensus 17 g~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~ 96 (429)
..+..+. ++|+||||||||||+.|++++|+..|.+++.... . +.+...
T Consensus 106 ~~~~~~~-~vIgVTGT~GKTTt~~~l~~iL~~~~~~~~~~~~--------------~---~~~~~~-------------- 153 (451)
T 3lk7_A 106 AYLVSES-QLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGN--------------I---GFPASE-------------- 153 (451)
T ss_dssp HHHHCCS-EEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEET--------------S---SSCHHH--------------
T ss_pred HHHHHHC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCC--------------C---CCCCHH--------------
T ss_conf 9987408-6899977778621899999998643344123046--------------6---767054--------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC--
Q ss_conf 776779578999999987411446247776444756764135677515898602500000027852344566653113--
Q gi|254780821|r 97 SAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK-- 174 (429)
Q Consensus 97 ~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k-- 174 (429)
......+.|++|+|+|...... .+. -+|+++|||||+.||+|++| |+|+++.+|..+++
T Consensus 154 ----------------~~~~~~~~~~~v~E~s~~~~~~-~~~-~~p~iaviTNI~~dHld~~~-s~e~y~~aK~~l~~~~ 214 (451)
T 3lk7_A 154 ----------------VVQAANDKDTLVMELSSFQLMG-VKE-FRPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQM 214 (451)
T ss_dssp ----------------HTTTCCTTCEEEEECCHHHHTT-CSS-CCCSEEEECCCCSCCHHHHS-SHHHHHHHHHGGGTTC
T ss_pred ----------------HHHCCCCCCEEEEEECCCCCCC-CCC-CCCCEEEEECCHHHHCCCCC-CHHHHHHHHHHHHHCC
T ss_conf ----------------4213589878999943321045-544-59869985071777637206-9889877755343146
Q ss_pred -CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf -79833154447178988999986210566523576321---01258524443103333444444322221111146999
Q gi|254780821|r 175 -PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFY---AFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAIC 250 (429)
Q Consensus 175 -~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aia 250 (429)
++..+|++.+ ++... .+ ..........++.+.. .......+.+.. ........++++|.||++|+++|++
T Consensus 215 ~~~~~~v~n~d-d~~~~-~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~G~hnv~NalaA~a 288 (451)
T 3lk7_A 215 SSSDFLVLNFN-QGISK-EL---AKTTKATIVPFSTTEKVDGAYVQDKQLFYKG-ENIMSVDDIGVPGSHNVENALATIA 288 (451)
T ss_dssp CTTSEEEEETT-SHHHH-HH---HTTCSSEEEEEESSSCCSSEEEETTEEEETT-EEEEEGGGSSSCSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCC-CHHHH-HH---HHHCCCCEEEECCCCCCCCCEEECEEEEECC-CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 66565333467-58999-99---8741773898447645563243030899757-1367652247764445660899999
Q ss_pred HHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 9875320000110011222233-665303542287544457874599933-63215799888654331147777124311
Q gi|254780821|r 251 AVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVI 328 (429)
Q Consensus 251 a~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~ 328 (429)
++..+|+ +.+.|.++|++++ .|||||++.. .++..+|.|+ ++||.++.+. ++. .+.+++++++
T Consensus 289 ~a~~lGi--~~~~i~~~L~~f~~~~gR~e~i~~-------~~g~~iidD~~~~~~~s~~~a---l~~---~~~~~ii~i~ 353 (451)
T 3lk7_A 289 VAKLAGI--SNQVIRETLSNFGGVKHRLQSLGK-------VHGISFYNDSKSTNILATQKA---LSG---FDNTKVILIA 353 (451)
T ss_dssp HHHHHTC--CHHHHHHHHHHCCCCTTSSEEEEE-------ETTEEEEECTTCCSHHHHHHH---HHT---SCGGGEEEEE
T ss_pred HHHHCCC--CHHHHHHHHHHCCCCHHHHEEEEC-------CCCEEEEECCCCHHHHHHHHH---HHH---CCCCCEEEEC
T ss_conf 9998699--999999999856665013157741-------388699956774169999999---974---7788728980
Q ss_pred CCCC-CCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCE
Q ss_conf 3467-989899999888638889998422889984212789899999998549978996998999999998603588679
Q gi|254780821|r 329 GMVE-GKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPL 407 (429)
Q Consensus 329 G~~~-dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~ 407 (429)
|+.. +++..++.+.+.+..+.++ +. .+...+.+.+.+.+.++..+.++++|++.+.+.+ +++|+
T Consensus 354 gg~~~~~~~~~l~~~~~~~~~~ii----~g---------~~~~~i~~~~~~~~~~~~~~~d~~eAi~~a~~~~--~~gDi 418 (451)
T 3lk7_A 354 GGLDRGNEFDELIPDITGLKHMVV----LG---------ESASRVKRAAQKAGVTYSDALDVRDAVHKAYEVA--QQGDV 418 (451)
T ss_dssp CCSCCSCCCGGGHHHHTTCSEEEE----CS---------TTHHHHHHHHHHTTCCEEECSSHHHHHHHHHHHC--CTTCE
T ss_pred CCCCCCCCHHHHHHHHHCCCEEEE----EC---------CCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHC--CCCCE
T ss_conf 785566659999999866988999----79---------9989999999866996897499999999999858--99799
Q ss_pred EEEECC
Q ss_conf 999497
Q gi|254780821|r 408 ILIAGS 413 (429)
Q Consensus 408 VLV~GS 413 (429)
||+.|+
T Consensus 419 VLls~a 424 (451)
T 3lk7_A 419 ILLSPA 424 (451)
T ss_dssp EEECCS
T ss_pred EEECCC
T ss_conf 997795
No 15
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2jfg_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=2.1e-41 Score=273.59 Aligned_cols=311 Identities=16% Similarity=0.162 Sum_probs=202.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429)
++|+||||||||||+.|++++|+..|+.+.+ .+. .|.+..
T Consensus 105 ~~IaVTGT~GKTTTt~~l~~iL~~~~~~~~~--------------~g~---~g~~~~----------------------- 144 (439)
T 2x5o_A 105 PIVAITGSNGKSTVTTLVGEMAKAAGVNVGV--------------GGN---IGLPAL----------------------- 144 (439)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTTCCEEE--------------EES---SSBCHH-----------------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCEE--------------CCC---CCCCCC-----------------------
T ss_conf 6899878998447999999998763865011--------------355---467301-----------------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444
Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429)
Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429)
.....+.|+.|+|.+... ++... .-+|+++|||||++||+|++|+..|.+...|..|++.+..+|++.+
T Consensus 145 ---------~~~~~~~~~~vve~~~~~-~~~~~-~~~p~iavitNi~~dHld~~~~~~e~y~~~k~~i~~~~~~~v~n~d 213 (439)
T 2x5o_A 145 ---------MLLDDECELYVLELSSFQ-LETTS-SLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNAD 213 (439)
T ss_dssp ---------HHCCTTCCEEEEECCHHH-HHTCC-CCCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCSEEEEETT
T ss_pred ---------CCCCCCCCEEEEECCCCC-CCCCC-CCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf ---------033578878999900355-34554-4476500102655410353111479999998653036733664351
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCC---CC-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf 7178988999986210566523576321---01-2585244431033334444443222211111469999875320000
Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYGDDFY---AF-EKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLE 260 (429)
Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~ 260 (429)
+ +..... .........++.+.. .. .....+.............++++|.||++|+++|++++..+|+ +
T Consensus 214 d-~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~lGi--~ 285 (439)
T 2x5o_A 214 D-ALTMPI-----RGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGL--P 285 (439)
T ss_dssp C-GGGSCS-----CCCSSCCEEECSSSSSEEEEEETTEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHTTC--C
T ss_pred H-HHHHHH-----HHCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC--C
T ss_conf 4-889998-----7436744675024443320003661599835851222221155660557778779999998399--6
Q ss_pred HHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEE-CCCCCCCHH
Q ss_conf 110011222233-665303542287544457874599933-63215799888654331147777124311-346798989
Q gi|254780821|r 261 KECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVI-GMVEGKKYG 337 (429)
Q Consensus 261 ~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~-G~~~dKd~~ 337 (429)
.+.|.++|++++ +|||||.+.. .++..+|.|+ ||||+|++++++.++.. .++.+++ |..++.++.
T Consensus 286 ~~~i~~~L~~f~gv~~R~e~~~~-------~~g~~~idD~~a~np~a~~~al~~~~~~-----~~~~~i~~g~~~~~~~~ 353 (439)
T 2x5o_A 286 RASSLKALTTFTGLPHRFEVVLE-------HNGVRWINDSKATNVGSTEAALNGLHVD-----GTLHLLLGGDGKSADFS 353 (439)
T ss_dssp HHHHHHHHHHCCCCTTSSEEEEE-------ETTEEEEECTTCCSHHHHHHHHTTCCCS-----SCEEEEEESBCTTCCCG
T ss_pred HHHHHHHHHHCCCCCCEEEEEEE-------ECCEEEEEECCCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCCCCHH
T ss_conf 99999999757797442689995-------0998999953799989999999966644-----88669974788644789
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEE-C--CH
Q ss_conf 99998886388899984228899842127898999999985499789969989999999986035886799994-9--77
Q gi|254780821|r 338 RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIA-G--SL 414 (429)
Q Consensus 338 ~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~-G--S~ 414 (429)
++.+.+....+.++++ . .+.+.+.+ .....+..+++++||++.+.+.+ +++|+||.. | ||
T Consensus 354 ~l~~~~~~~~~~v~~~---G---------~~~~~i~~---~~~~~~~~~~~l~eav~~a~~~~--~~gDvVLlSP~~aSf 416 (439)
T 2x5o_A 354 PLARYLNGDNVRLYCF---G---------RDGAQLAA---LRPEVAEQTETMEQAMRLLAPRV--QPGDMVLLSPACASL 416 (439)
T ss_dssp GGGGGSCSSSEEEEEE---S---------TTHHHHHT---TSGGGEEECSSHHHHHHHHGGGC--CTTCEEEECCSSBST
T ss_pred HHHHHHHCCCCEEEEE---C---------CCHHHHHH---HCCCCEEECCCHHHHHHHHHHHC--CCCCEEEECCCCCCC
T ss_conf 9999985048899998---9---------89899985---37777177598999999999858--992999979744030
Q ss_pred ------HHHHHHHHH
Q ss_conf ------999999998
Q gi|254780821|r 415 ------YLAGEALRE 423 (429)
Q Consensus 415 ------ylvge~l~~ 423 (429)
.-=|+..++
T Consensus 417 d~f~~~~~RG~~F~~ 431 (439)
T 2x5o_A 417 DQFKNFEQRGNEFAR 431 (439)
T ss_dssp TTSSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 232799999999999
No 16
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58}
Probab=99.96 E-value=2.5e-30 Score=205.22 Aligned_cols=204 Identities=18% Similarity=0.205 Sum_probs=127.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429)
++|+||||||||||++|++++|+++|++++....-. ++....+ ..+. .....
T Consensus 109 ~vIaVTGTnGKTTTt~mi~~iL~~~g~~~~~~~~~~---------~~~~~~~-~~~~---------------~~~~~--- 160 (326)
T 3eag_A 109 WVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGV---------PENFGVS-ARLP---------------QTPRQ--- 160 (326)
T ss_dssp EEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSE---------ETTSSCS-EECC---------------CCCSS---
T ss_pred CEEEEECCCCCEEHHHHHHHHHHHCCCCCCCCCCCC---------CCCCCCC-CCCC---------------CCCCC---
T ss_conf 379994689955499999999986199831114553---------2245760-0135---------------55444---
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHH--HHH-HCC-CCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCC
Q ss_conf 8999999987411446247776444756--764-135-677515898602500000027852344566653113---798
Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGS--LDA-TNI-IEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGC 177 (429)
Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr--~Da-Tnv-i~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~ 177 (429)
......|++|+|++.... .+. .+. .-+|+++|||||++||+|++| |+|+++.+|..+++ ++.
T Consensus 161 ----------~~~~~~~~~V~E~~~~~~~~~~~~~~~~~~~p~iaviTNI~~DHLd~~~-s~e~y~~~k~~~~~~~~~~g 229 (326)
T 3eag_A 161 ----------DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFA-DLGAIQTQFHYLVRTVPSEG 229 (326)
T ss_dssp ----------CTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSS-SHHHHHHHHHHHHTTSCTTS
T ss_pred ----------CCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCC
T ss_conf ----------4455673222221576535677403443468978999644454224348-99999999999997436573
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC--CCCC--CCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 331544471789889999862105665235763--2101--258524443103333444444322221111146999987
Q gi|254780821|r 178 PVVIGHQVYDEVREILVSKAEKMGCPYNVYGDD--FYAF--EKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQ 253 (429)
Q Consensus 178 ~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~ 253 (429)
.+|++.+ ++...+.+.+ ........++.+ +... ..+..+.............++++|+||++|+++|+++++
T Consensus 230 ~~v~n~d-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HNv~NalaAia~a~ 305 (326)
T 3eag_A 230 LIVCNGR-QQSLQDTLDK---GCWTPVEKFGTEHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAAR 305 (326)
T ss_dssp EEEEESS-CHHHHHHHTT---CCCSCEEEESSSSSEEEEEECTTSCEEEEETTEEEEEECCCCCSHHHHHHHHHHHHHHH
T ss_pred EEEEECC-CHHHHHHHHH---HCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 8999378-7899999865---21355200254202223331477169999999188999978652999999999999999
Q ss_pred HHHHCCHHHHCCCCCCCCCC
Q ss_conf 53200001100112222336
Q gi|254780821|r 254 MAGFTLEKECINAALQSVQW 273 (429)
Q Consensus 254 ~lg~~i~~~~I~~gL~~~~~ 273 (429)
.+|+ +.+.|.++|++++-
T Consensus 306 ~lGi--~~~~i~~aL~~F~G 323 (326)
T 3eag_A 306 HVGV--DIQTACEALGAFKN 323 (326)
T ss_dssp HHTC--CHHHHHHHHHTCCC
T ss_pred HCCC--CHHHHHHHHCCCCC
T ss_conf 8499--99999999746989
No 17
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.48 E-value=1.9e-13 Score=100.83 Aligned_cols=139 Identities=16% Similarity=0.086 Sum_probs=90.7
Q ss_pred CCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC-----CHH
Q ss_conf 011222233-66530354228754445787459993363215799888654331147777124311346798-----989
Q gi|254780821|r 264 INAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGK-----KYG 337 (429)
Q Consensus 264 I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~~dK-----d~~ 337 (429)
+.++|..++ .++|||++.. .++.+||.||||||++++++.+.++.... .+++++++....+. ...
T Consensus 14 ~~~~l~~~~g~~RR~E~v~~-------~~g~~vidDyAHnP~~i~a~l~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~ 84 (163)
T 3mvn_A 14 GTENLYFQSNAQRRLEVKGV-------VNNITVYDDFAHHPTAITATIDALRAKVG--QQRILAVLEPRSNTMKMGVHKH 84 (163)
T ss_dssp -------------CCEEEEE-------ETTEEEEEECCCSHHHHHHHHHHHHHHHT--TSCEEEEECCC---------CH
T ss_pred HHHHHHHCCCCCCCEEEEEE-------CCCCEEEEECCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCCHHHHHHHHH
T ss_conf 99888757897635499972-------59948999689998999999999986236--6538842022331144676699
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEE--CCHH
Q ss_conf 99998886388899984228899842127898999999985499789969989999999986035886799994--9779
Q gi|254780821|r 338 RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIA--GSLY 415 (429)
Q Consensus 338 ~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~--GS~y 415 (429)
++...+. ..+.++... .+. .... ..+.....+.+...++++++|++.+.+.+ +|+|+||++ ||+.
T Consensus 85 e~~~~l~-~~~~v~~~~---~~~----~~~~---~~~~~~~~~~~~~~~~d~~eai~~l~~~a--~~gDvVL~~G~G~~~ 151 (163)
T 3mvn_A 85 ELATSLQ-DADSVFIYQ---PPT----IEWQ---VSEVLANLAQPAISADDVDELVMRIVQQA--KPNDHILIMSNGAFG 151 (163)
T ss_dssp HHHHHHT-TCSEEEEEC---C--------CC---HHHHHTTCCSCEEEESSHHHHHHHHHHHC--CTTCEEEEECSSCGG
T ss_pred HHHHHHH-CCCEEEECC---CCC----CHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHC--CCCCEEEEECCCCHH
T ss_conf 9999851-377999827---854----1143---68898750468299658999999999867--996999998499788
Q ss_pred HHHH-HHHHC
Q ss_conf 9999-99987
Q gi|254780821|r 416 LAGE-ALREN 424 (429)
Q Consensus 416 lvge-~l~~~ 424 (429)
-+.+ +++.+
T Consensus 152 ~~~~~i~~~L 161 (163)
T 3mvn_A 152 GIHQKLLTAL 161 (163)
T ss_dssp GHHHHHHHHT
T ss_pred HHHHHHHHHH
T ss_conf 9999999984
No 18
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, disease mutation, mitochondrion, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.33 E-value=0.001 Score=40.77 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=73.7
Q ss_pred CEEEEECC--CCHHHHHHHHHHHHHHCCCCEEEEE----CCCC--CEEEEEEEECCCC-CCCEECCHHHHHHHHHHHHHC
Q ss_conf 83999458--9847999999999999789351413----7841--1012008988847-787155889999999998630
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLLETSGLSVHVHT----SPHL--IRWNERFRLGVKG-GRGRLVEDVELLDVFRRVRRV 95 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il~~~g~k~g~~t----SPhl--~~~~Eri~i~~~~-~~g~~i~~~~~~~~~~~i~~~ 95 (429)
.+|+|||+ -||||...-+..-+...|++||..+ ||-= .-..+|+|+.... ..+..+-... ....
T Consensus 75 ~~IGitG~PGaGKStli~~l~~~~~~~g~~vaVla~Dpss~~~gg~llgdriRm~~~~~~~~~~ir~~~-------~~~~ 147 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSP-------TRGT 147 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC------------
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCH-------HHHH
T ss_conf 588621799988999999999999847971789957878662688877538846963578763126664-------4442
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH-HHH-HHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 47767795789999999874114462477764-447-5676413567751589860250000002785234456665311
Q gi|254780821|r 96 KSAQNLTIFELSIATALVLFSKYPADCAIIEV-GLG-GSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII 173 (429)
Q Consensus 96 ~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~-GlG-Gr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~ 173 (429)
....... |.-+...+...+.|+.++|+ |.| ...+...+.+. .+.|+.+= .|+.+ -..|+|||
T Consensus 148 ~gg~~~~-----~~~~i~llea~G~D~i~iEtvG~gq~e~~~~~~ad~-~v~v~~p~-------~Gd~~---q~~k~gi~ 211 (349)
T 2www_A 148 LGGVTRT-----TNEAILLCEGAGYDIILIETVGVGQSEFAVADMVDM-FVLLLPPA-------GGDEL---QGIKRGII 211 (349)
T ss_dssp ----CTT-----HHHHHHHHHHTTCSEEEEECCCC--CHHHHHTTCSE-EEEEECCC----------------------C
T ss_pred HCCHHHH-----HHHHHHHHHCCCCCEEEEEECCCCCCCCCEECCCCE-EEEEECCC-------CCCHH---HHHHCCCE
T ss_conf 1110254-----799999874069986999853665025433226654-66873367-------64225---45401610
Q ss_pred CCCCCCCCCCCCCHHHHH
Q ss_conf 379833154447178988
Q gi|254780821|r 174 KPGCPVVIGHQVYDEVRE 191 (429)
Q Consensus 174 k~~~~~v~~~~~~~~~~~ 191 (429)
.-...+|+++-+.+....
T Consensus 212 EiADiiVVNKaD~~~~~~ 229 (349)
T 2www_A 212 EMADLVAVTKSDGDLIVP 229 (349)
T ss_dssp CSCSEEEECCCSGGGHHH
T ss_pred ECCCEEEEECCCCCCHHH
T ss_conf 222078881567633678
No 19
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=96.70 E-value=0.0016 Score=39.55 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=29.4
Q ss_pred CEEEEECCC---CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 839994589---84799999999999978935141
Q gi|254780821|r 25 PVIHIGGTN---GKGSVASFSQRLLETSGLSVHVH 56 (429)
Q Consensus 25 ~vI~VtGTn---GKttt~~~i~~il~~~g~k~g~~ 56 (429)
+.|=||||. ||||++..+...|.+.|+||+.|
T Consensus 2 ~~~~Itgt~~GVGKTtvs~~La~~La~~G~rV~~~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 52999989999759999999999999779949998
No 20
>2qmo_A Dethiobiotin synthetase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.47A {Helicobacter pylori 26695} PDB: 3mle_A*
Probab=96.40 E-value=0.0038 Score=37.18 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=30.1
Q ss_pred CEEEEECCC---CHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 839994589---847999999999999789351413
Q gi|254780821|r 25 PVIHIGGTN---GKGSVASFSQRLLETSGLSVHVHT 57 (429)
Q Consensus 25 ~vI~VtGTn---GKttt~~~i~~il~~~g~k~g~~t 57 (429)
++|=||||+ |||+++..|.+.|++.|+||+.|-
T Consensus 2 k~ifItgT~t~vGKT~vs~~L~~~L~~~G~~V~~~K 37 (220)
T 2qmo_A 2 HMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 37 (220)
T ss_dssp CEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 789999799998799999999999997899699976
No 21
>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} SCOP: c.37.1.10
Probab=96.26 E-value=0.018 Score=33.01 Aligned_cols=155 Identities=20% Similarity=0.226 Sum_probs=73.6
Q ss_pred HHHHHHHC-CCHHHHCCCEEEEECC--CCHHHHHHHHHHHHHHCCCCEEEEE----CCCC--CEEEEEEEECCCCCC-CE
Q ss_conf 99999872-9958835983999458--9847999999999999789351413----7841--101200898884778-71
Q gi|254780821|r 9 MGYLLEDL-GRPQDRLPPVIHIGGT--NGKGSVASFSQRLLETSGLSVHVHT----SPHL--IRWNERFRLGVKGGR-GR 78 (429)
Q Consensus 9 ~~~ll~~l-g~P~~~~~~vI~VtGT--nGKttt~~~i~~il~~~g~k~g~~t----SPhl--~~~~Eri~i~~~~~~-g~ 78 (429)
...||+++ .+..+. .+|+|||+ -||||...-+..-+...|.++|..+ ||-- .-...|+|+...... +.
T Consensus 42 ~~~ll~~~~~~~~~~--~~IgItG~PGaGKSTLi~~L~~~~~~~~~~vavlavDpss~~sggailgDr~Rm~~l~~~~~~ 119 (341)
T 2p67_A 42 STQLLDAIMPYCGNT--LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAA 119 (341)
T ss_dssp HHHHHHHHGGGCSCS--EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTE
T ss_pred HHHHHHHHHHCCCCC--EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCE
T ss_conf 999999875226985--289732899998999999999998616886014416886640244362126789875157753
Q ss_pred ECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH-HHH-HHHHHHCCCCCCCEEEEEECCCHHCC
Q ss_conf 5588999999999863047767795789999999874114462477764-447-56764135677515898602500000
Q gi|254780821|r 79 LVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEV-GLG-GSLDATNIIEKVAVSVITSISLDHEK 156 (429)
Q Consensus 79 ~i~~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~-GlG-Gr~DaTnvi~~~~vavITnI~~DHle 156 (429)
.+ ++......+.-.---|--+...+...+.|+.++|+ |.| ...+..... |+.++. +.+.
T Consensus 120 ~i------------r~~~s~~~lgg~~~~~~~~v~~l~~~g~D~iliETVG~gq~e~~v~~~a---D~~l~v-l~p~--- 180 (341)
T 2p67_A 120 FI------------RPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMV---DCFISL-QIAG--- 180 (341)
T ss_dssp EE------------EEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHTTC---SEEEEE-ECC----
T ss_pred EE------------ECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCC---CEEEEE-ECCC---
T ss_conf 54------------1366654443203656889999875599731221026776521244205---503564-0567---
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 02785234456665311379833154447178
Q gi|254780821|r 157 ILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDE 188 (429)
Q Consensus 157 ~LG~tle~Ia~eKa~I~k~~~~~v~~~~~~~~ 188 (429)
.|+. +-..|.+|+.-...+|+++-+.+.
T Consensus 181 -~GD~---iq~~k~gi~EiaDivVVNK~D~~~ 208 (341)
T 2p67_A 181 -GGDD---LQGIKKGLMEVADLIVINKDDGDN 208 (341)
T ss_dssp ---------CCCCHHHHHHCSEEEECCCCTTC
T ss_pred -CCCH---HHHCCCCHHEECCEEEEECCCCCC
T ss_conf -6423---321252311105579997523543
No 22
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.15 E-value=0.047 Score=30.44 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=26.7
Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 839994589--847999999999999789351413
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSVHVHT 57 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~t 57 (429)
.||.+.|-+ |||||++=++..+...|+||++-|
T Consensus 102 ~Vi~lvG~~GvGKTTT~aKLA~~~~~~g~kv~Lva 136 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 59999668788865508999999986002020000
No 23
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.08 E-value=0.0058 Score=36.07 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=27.7
Q ss_pred CEEEEECCC---CHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 839994589---8479999999999997893514
Q gi|254780821|r 25 PVIHIGGTN---GKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 25 ~vI~VtGTn---GKttt~~~i~~il~~~g~k~g~ 55 (429)
+||+|+| + |||||+.-++..|...|+||++
T Consensus 42 kiIAVaG-KGGVGKTTtsvNLA~aLA~~GkrVLl 74 (307)
T 3end_A 42 KVFAVYG-KGGIGKSTTSSNLSAAFSILGKRVLQ 74 (307)
T ss_dssp EEEEEEC-STTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 3999989-98757999999999999987994999
No 24
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.92 E-value=0.0054 Score=36.28 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q ss_conf 71789889999862105665
Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPY 204 (429)
Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~ 204 (429)
..+...+.++..+...++++
T Consensus 139 ~R~aA~eQL~~~a~~~~v~~ 158 (302)
T 3b9q_A 139 FRAAASDQLEIWAERTGCEI 158 (302)
T ss_dssp SCHHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHHHHCCCCE
T ss_conf 78779999999986426530
No 25
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding, ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=95.82 E-value=0.0092 Score=34.82 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=30.6
Q ss_pred CEEEEECCC---CHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 839994589---847999999999999789351413
Q gi|254780821|r 25 PVIHIGGTN---GKGSVASFSQRLLETSGLSVHVHT 57 (429)
Q Consensus 25 ~vI~VtGTn---GKttt~~~i~~il~~~g~k~g~~t 57 (429)
++|=||||+ |||+++.-|...|+..|++|+.|-
T Consensus 27 ~~lfItGT~TgVGKT~Vs~~L~~aL~~~G~~V~~~K 62 (251)
T 3fgn_A 27 TILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 868998699996199999999999996899499977
No 26
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.26 E-value=0.023 Score=32.35 Aligned_cols=48 Identities=25% Similarity=0.287 Sum_probs=33.4
Q ss_pred HHHHHHHCCCHHHHCCCEEEEECC--CCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999998729958835983999458--9847999999999999789351413
Q gi|254780821|r 9 MGYLLEDLGRPQDRLPPVIHIGGT--NGKGSVASFSQRLLETSGLSVHVHT 57 (429)
Q Consensus 9 ~~~ll~~lg~P~~~~~~vI~VtGT--nGKttt~~~i~~il~~~g~k~g~~t 57 (429)
.+++++++- |+..=..+|+|||. -||||...-+..-+...|.|+|..+
T Consensus 41 ~~~l~~~~~-~~~~~~~~IgItG~PGaGKSTLi~~L~~~~~~~g~kvavla 90 (337)
T 2qm8_A 41 VRDLIDAVL-PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp HHHHHHHHG-GGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHH-HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999999764-20688259952389998899999999999743898311231
No 27
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A*
Probab=94.52 E-value=0.09 Score=28.70 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=71.4
Q ss_pred HHHHHHHCCCHHH-HCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEE----CCCC--CEEEEEEEECCCCCC-CE
Q ss_conf 9999987299588-359839994589--847999999999999789351413----7841--101200898884778-71
Q gi|254780821|r 9 MGYLLEDLGRPQD-RLPPVIHIGGTN--GKGSVASFSQRLLETSGLSVHVHT----SPHL--IRWNERFRLGVKGGR-GR 78 (429)
Q Consensus 9 ~~~ll~~lg~P~~-~~~~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~t----SPhl--~~~~Eri~i~~~~~~-g~ 78 (429)
..++|+++- |+. +- .+|+|||.- ||+|...-+..-+...|.++|..+ ||.- .-.-+|+|+.....+ +.
T Consensus 65 ~~~~l~~~~-~~~~~~-~rIgItG~PGaGKSTLi~~L~~~~~~~g~~VavlavDPss~~sggailgDr~Rm~~~~~~~~~ 142 (355)
T 3p32_A 65 AQQLLLRLL-PDSGNA-HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNA 142 (355)
T ss_dssp HHHHHHHHG-GGCCCS-EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTE
T ss_pred HHHHHHHHH-HCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHCCCCCE
T ss_conf 999999873-016897-599742899998999999999999864886568846888742120121001247775058863
Q ss_pred ECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH-HHH-HHHHHHCCCCCCCEEEEEECCCHHCC
Q ss_conf 5588999999999863047767795789999999874114462477764-447-56764135677515898602500000
Q gi|254780821|r 79 LVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEV-GLG-GSLDATNIIEKVAVSVITSISLDHEK 156 (429)
Q Consensus 79 ~i~~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~-GlG-Gr~DaTnvi~~~~vavITnI~~DHle 156 (429)
.+ +.......+.-+--.|--+...+...+.|+.++|+ |.| ...+...+.+. .+-|+.+ .
T Consensus 143 ~i------------r~~~trg~~gg~~~~~~~~~~ll~~~G~d~iiiETVGvgqse~~v~~~aD~-~vlV~~P---~--- 203 (355)
T 3p32_A 143 YI------------RPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQSEVAVANMVDT-FVLLTLA---R--- 203 (355)
T ss_dssp EE------------ECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSSHHHHHHTTCSE-EEEEEES---S---
T ss_pred EE------------EECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCC-EEEECCC---C---
T ss_conf 57------------615876632024442144677787539980234303554444301002331-0123056---6---
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 0278523445666531137983315444717
Q gi|254780821|r 157 ILGNTVSAIAKDKSGIIKPGCPVVIGHQVYD 187 (429)
Q Consensus 157 ~LG~tle~Ia~eKa~I~k~~~~~v~~~~~~~ 187 (429)
.|+. +-..|+||+.-...+|+++-+.+
T Consensus 204 -~GDe---iQ~~k~gilEiaDiiVVNK~D~~ 230 (355)
T 3p32_A 204 -TGDQ---LQGIKKGVLELADIVVVNKADGE 230 (355)
T ss_dssp -TTCT---TTTCCTTSGGGCSEEEEECCCGG
T ss_pred -CCHH---HHHCCCCHHHCCCEEEEECCCCC
T ss_conf -4146---76507133311657899631367
No 28
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.37 E-value=0.17 Score=27.07 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=6.3
Q ss_pred HHHHHHHCCCCEEEE
Q ss_conf 999998549978996
Q gi|254780821|r 372 LMQEAKKLGFQAMAC 386 (429)
Q Consensus 372 l~~~~~~~~~~~~~~ 386 (429)
+.......+.++..+
T Consensus 322 ~lsi~~~~~~Pi~fi 336 (359)
T 2og2_A 322 VVSVVEELGIPVKFI 336 (359)
T ss_dssp HHHHHHHHCCCEEEE
T ss_pred HHHHHHHHCCCEEEE
T ss_conf 999999989597999
No 29
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.31 E-value=0.069 Score=29.41 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=30.3
Q ss_pred HCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 359839994589--84799999999999978935141
Q gi|254780821|r 22 RLPPVIHIGGTN--GKGSVASFSQRLLETSGLSVHVH 56 (429)
Q Consensus 22 ~~~~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~ 56 (429)
.+.|||+|+|.+ ||||-..-+-..|++.|+|||..
T Consensus 4 ~m~pii~ivG~~~SGKTTLi~~li~~L~~~G~~V~~I 40 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 3602799990699989999999999999779828899
No 30
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.30 E-value=0.049 Score=30.36 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=27.6
Q ss_pred CEEEEECCC---CHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 839994589---8479999999999997893514
Q gi|254780821|r 25 PVIHIGGTN---GKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 25 ~vI~VtGTn---GKttt~~~i~~il~~~g~k~g~ 55 (429)
+||+|++.+ ||||++..++..|...|+||.+
T Consensus 3 kvIav~s~kGGvGKTT~a~nLA~~la~~g~~Vll 36 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLA 36 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 3999989999970999999999999978998999
No 31
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.25 E-value=0.061 Score=29.73 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHCCCHHHHCCCEEEEECC---CCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8899999998729958835983999458---98479999999999997893514
Q gi|254780821|r 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGT---NGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 5 ~l~r~~~ll~~lg~P~~~~~~vI~VtGT---nGKttt~~~i~~il~~~g~k~g~ 55 (429)
.+.+++.-+... .+..+. ++|.||++ -||||++.-++..|...|+||.+
T Consensus 65 ~~r~l~~~l~~~-~~~~~~-kvI~vtS~~~g~GKTtia~nLA~~lA~~G~rVLl 116 (271)
T 3bfv_A 65 KFRGIRSNIMFA-NPDSAV-QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLI 116 (271)
T ss_dssp HHHHHHHHHHHS-STTCCC-CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHH-CCCCCC-EEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999987763-479998-5999974899898899999999999976994999
No 32
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.18 E-value=0.065 Score=29.59 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=28.8
Q ss_pred CCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 59839994---5898479999999999997893514
Q gi|254780821|r 23 LPPVIHIG---GTNGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 23 ~~~vI~Vt---GTnGKttt~~~i~~il~~~g~k~g~ 55 (429)
++++|+|+ |=-|||||+.-|+..|...|+||.+
T Consensus 17 i~~~IaV~SgKGGvGKTT~a~NLA~aLA~~GkkVll 52 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGI 52 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 886999975999887999999999999977992576
No 33
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.12 E-value=0.12 Score=27.84 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=27.3
Q ss_pred CCEEEEECC---CCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 983999458---98479999999999997893514
Q gi|254780821|r 24 PPVIHIGGT---NGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 24 ~~vI~VtGT---nGKttt~~~i~~il~~~g~k~g~ 55 (429)
.+||.||++ -||||++.-++..|.+.|+||.+
T Consensus 104 ~kvI~VtS~~~G~GKTtva~nLA~~lA~~GkrVLL 138 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLF 138 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 85999977999998899999999999977996899
No 34
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.08 E-value=0.26 Score=25.84 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=27.0
Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 839994589--847999999999999789351413
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSVHVHT 57 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~t 57 (429)
.||-+.|.| |||||+.=++..++..|+||++-+
T Consensus 99 ~VIl~vG~~G~GKTTT~aKLA~~~~~~g~kv~lva 133 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 38999667887610089999999986398368984
No 35
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.03 E-value=0.073 Score=29.25 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=30.5
Q ss_pred HHCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8359839994589--84799999999999978935141
Q gi|254780821|r 21 DRLPPVIHIGGTN--GKGSVASFSQRLLETSGLSVHVH 56 (429)
Q Consensus 21 ~~~~~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~ 56 (429)
+.+ +||+|+|.. ||||.+.-|-.-|...|++||..
T Consensus 2 n~m-ki~~I~G~~gSGKTTLi~~Li~~L~~~G~~V~~i 38 (169)
T 1xjc_A 2 NAM-NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 38 (169)
T ss_dssp --C-CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCC-EEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 976-5999981999989999999999999769905677
No 36
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.94 E-value=0.074 Score=29.23 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=29.5
Q ss_pred HHHHCCCEEEEECCC---CHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 588359839994589---8479999999999997893514
Q gi|254780821|r 19 PQDRLPPVIHIGGTN---GKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 19 P~~~~~~vI~VtGTn---GKttt~~~i~~il~~~g~k~g~ 55 (429)
+..+. +||.||+++ ||||++.-++..|...|+||-+
T Consensus 88 ~~~~~-kvi~VtS~~~G~GKTtia~nLA~~lA~~G~rVLL 126 (286)
T 3la6_A 88 MQAQN-NVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLL 126 (286)
T ss_dssp TTTTC-CEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCCCC-EEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 59998-1899977999998899999999999977991899
No 37
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii}
Probab=93.91 E-value=0.048 Score=30.41 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=29.9
Q ss_pred CCEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9839994589--847999999999999789351413
Q gi|254780821|r 24 PPVIHIGGTN--GKGSVASFSQRLLETSGLSVHVHT 57 (429)
Q Consensus 24 ~~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~t 57 (429)
+.||-+.|-| |||||+.=++..++..|+||++-+
T Consensus 99 p~VIllvGl~GsGKTTT~aKLA~~l~~~g~kv~lva 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 869998579877621489999999997799742442
No 38
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus P2} PDB: 1qzx_A 1qzw_A
Probab=93.49 E-value=0.092 Score=28.64 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=29.3
Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 839994589--847999999999999789351413
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSVHVHT 57 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~t 57 (429)
.||.+.|-| |||||++=+++.+...|+||++-|
T Consensus 98 ~Vi~lvG~~G~GKTTTiaKLA~~~~~~g~kV~lva 132 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 79999747888701349999999986598158984
No 39
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide, SAD phasing; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.37 E-value=0.065 Score=29.56 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHCCCHH---HHCCCEEEEEC---CCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 7788899999998729958---83598399945---898479999999999997893514
Q gi|254780821|r 2 AADSLLKMGYLLEDLGRPQ---DRLPPVIHIGG---TNGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 2 ~~~~l~r~~~ll~~lg~P~---~~~~~vI~VtG---TnGKttt~~~i~~il~~~g~k~g~ 55 (429)
+...-+.|+++-...-.|- ++-++||+|++ =-||||++.-++..|. .|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~kvI~v~s~KGGVGKTT~a~nLA~~la-~g~rVll 60 (267)
T 3k9g_A 2 AHHHHHHMGTLEAQTQGPGSMDNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLL 60 (267)
T ss_dssp ------------------------CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEE
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEE
T ss_conf 7530100023665445987668889979999899997589999999999998-7998899
No 40
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.18 E-value=0.056 Score=29.97 Aligned_cols=31 Identities=19% Similarity=0.486 Sum_probs=27.5
Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 839994589--8479999999999997893514
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~ 55 (429)
|||+|||.- ||||++..+.++|...|.++..
T Consensus 6 pIIgItG~SGSGKTTva~~L~~il~~~~v~~~v 38 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVS 38 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 789998999780999999999985346997699
No 41
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.05 E-value=0.11 Score=28.22 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=26.9
Q ss_pred CEEEEE--CCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 839994--5898479999999999997893514
Q gi|254780821|r 25 PVIHIG--GTNGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 25 ~vI~Vt--GTnGKttt~~~i~~il~~~g~k~g~ 55 (429)
++|.|+ |=-|||||+.-+++.|.+.|+||.+
T Consensus 3 r~IaisGKGGVGKTT~a~nLA~aLA~~G~rVLl 35 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMI 35 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 099998999875999999999999987998899
No 42
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=92.49 E-value=0.13 Score=27.68 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=27.6
Q ss_pred CEEEEECC---CCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 83999458---98479999999999997893514
Q gi|254780821|r 25 PVIHIGGT---NGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 25 ~vI~VtGT---nGKttt~~~i~~il~~~g~k~g~ 55 (429)
+||+|++. -||||++.-++..|...|+||.+
T Consensus 3 kvI~v~s~KGGvGKTtia~nlA~~la~~g~kVll 36 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTI 36 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 6999989999871999999999999968998999
No 43
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.28 E-value=0.27 Score=25.75 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=12.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 4447178988999986210566523
Q gi|254780821|r 182 GHQVYDEVREILVSKAEKMGCPYNV 206 (429)
Q Consensus 182 ~~~~~~~~~~~i~~~a~~~~~~~~~ 206 (429)
.+-..+...+.++..+...+++++.
T Consensus 140 ~Dt~R~aA~eQL~~~a~~~~v~~~~ 164 (306)
T 1vma_A 140 ADTFRAAAIEQLKIWGERVGATVIS 164 (306)
T ss_dssp ECTTCHHHHHHHHHHHHHHTCEEEC
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 3566777999999988514877547
No 44
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.19 E-value=0.19 Score=26.67 Aligned_cols=45 Identities=33% Similarity=0.420 Sum_probs=32.9
Q ss_pred HHHHHCCCHHHHCCCEEEEECC--CCHHHHHHHHHHHHHHC--CCCEEE
Q ss_conf 9998729958835983999458--98479999999999997--893514
Q gi|254780821|r 11 YLLEDLGRPQDRLPPVIHIGGT--NGKGSVASFSQRLLETS--GLSVHV 55 (429)
Q Consensus 11 ~ll~~lg~P~~~~~~vI~VtGT--nGKttt~~~i~~il~~~--g~k~g~ 55 (429)
..-+-||.+..+-+=||+|+|. -||||+|..|..+|... +.+|.+
T Consensus 67 ~~~~fl~~~~~k~P~IIGIaG~sgsGKSTla~~L~~lL~~~~~~~~v~l 115 (308)
T 1sq5_A 67 VLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp HHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9999846889999689999899988799999999999710169996599
No 45
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.97 E-value=0.26 Score=25.87 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=28.0
Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 839994589--847999999999999789351413
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSVHVHT 57 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~t 57 (429)
-+|+|+|.- ||||+|.+|+..|...|..+..+.
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~ 57 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 89998898988999999999998352477602201
No 46
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, P partition, DNA binding protein; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=91.93 E-value=0.4 Score=24.68 Aligned_cols=53 Identities=23% Similarity=0.175 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHCCCHHHHC----CCEEEEEC---CCCHHHHHHHHHHHHHHC------CCCEEE
Q ss_conf 788899999998729958835----98399945---898479999999999997------893514
Q gi|254780821|r 3 ADSLLKMGYLLEDLGRPQDRL----PPVIHIGG---TNGKGSVASFSQRLLETS------GLSVHV 55 (429)
Q Consensus 3 ~~~l~r~~~ll~~lg~P~~~~----~~vI~VtG---TnGKttt~~~i~~il~~~------g~k~g~ 55 (429)
+-||.-+..+.++.|-|..+- ..||.|+. =-|||||+..+++.|..+ |+||.+
T Consensus 83 ~~tl~~i~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTttv~LA~~La~~~~la~~g~RVLl 148 (398)
T 3ez2_A 83 AMSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILV 148 (398)
T ss_dssp CBCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEE
T ss_pred EEEHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 655999999999726898777899876999978889874899999999999972066646995598
No 47
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=91.83 E-value=0.22 Score=26.32 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=29.6
Q ss_pred CCEEEEECC--CCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 983999458--9847999999999999789351413
Q gi|254780821|r 24 PPVIHIGGT--NGKGSVASFSQRLLETSGLSVHVHT 57 (429)
Q Consensus 24 ~~vI~VtGT--nGKttt~~~i~~il~~~g~k~g~~t 57 (429)
+++|-++|- -||||++..++..|...|+||.+-.
T Consensus 8 ~~~i~~sGKGGvGKTTvaa~lA~~lA~~G~rVLlvD 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 848999899600799999999999996899899997
No 48
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.71 E-value=0.31 Score=25.38 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=12.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 4447178988999986210566523
Q gi|254780821|r 182 GHQVYDEVREILVSKAEKMGCPYNV 206 (429)
Q Consensus 182 ~~~~~~~~~~~i~~~a~~~~~~~~~ 206 (429)
++...+.+.+.++..+...+++++.
T Consensus 165 ~Dt~R~aA~eQL~~~a~~~~v~~~~ 189 (328)
T 3e70_C 165 SDTFRAGAIEQLEEHAKRIGVKVIK 189 (328)
T ss_dssp ECCSSTTHHHHHHHHHHHTTCEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEC
T ss_conf 2324507999999998873576146
No 49
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.15 E-value=0.43 Score=24.53 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=31.7
Q ss_pred HHHHHHCCCHHHHCCCEEEEECC--CCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99998729958835983999458--98479999999999997893514
Q gi|254780821|r 10 GYLLEDLGRPQDRLPPVIHIGGT--NGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 10 ~~ll~~lg~P~~~~~~vI~VtGT--nGKttt~~~i~~il~~~g~k~g~ 55 (429)
..+++++. |...=.++|+|+|. -||||++.+++..|...+..+..
T Consensus 9 ~~~~~~~~-~~~~~~~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~ 55 (208)
T 3c8u_A 9 QGVLERLD-PRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEV 55 (208)
T ss_dssp HHHHHHSC-TTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999750-349996899988989899999999999997342898157
No 50
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.90 E-value=0.28 Score=25.63 Aligned_cols=14 Identities=7% Similarity=-0.090 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 71789889999862
Q gi|254780821|r 185 VYDEVREILVSKAE 198 (429)
Q Consensus 185 ~~~~~~~~i~~~a~ 198 (429)
..+...+.++..+.
T Consensus 144 ~R~aA~eQL~~~a~ 157 (320)
T 1zu4_A 144 FRAGATQQLEEWIK 157 (320)
T ss_dssp SCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
T ss_conf 10889999999987
No 51
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=90.83 E-value=0.096 Score=28.53 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=5.4
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999854997
Q gi|254780821|r 370 KVLMQEAKKLGFQ 382 (429)
Q Consensus 370 ~~l~~~~~~~~~~ 382 (429)
+.+.+.++..+.+
T Consensus 508 ~r~~~~L~~~gi~ 520 (589)
T 1ihu_A 508 ANLQADLERAGIH 520 (589)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999858999
No 52
>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1 c.37.1.10 PDB: 1fts_A
Probab=90.83 E-value=0.33 Score=25.21 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 1544471789889999862105665235
Q gi|254780821|r 180 VIGHQVYDEVREILVSKAEKMGCPYNVY 207 (429)
Q Consensus 180 v~~~~~~~~~~~~i~~~a~~~~~~~~~~ 207 (429)
+..+...+.+.+.++..+...+++++..
T Consensus 133 va~Dt~R~aA~eQL~~~a~~~~v~~~~~ 160 (309)
T 2qy9_A 133 AAGDTFRAAAVEQLQVWGQRNNIPVIAQ 160 (309)
T ss_dssp ECCCTTCHHHHHHHHHHHHHTTCCEECC
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEC
T ss_conf 6445306549999999875249837733
No 53
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=90.69 E-value=0.18 Score=26.92 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=28.7
Q ss_pred HHCCCEEEEECC---CCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 835983999458---98479999999999997893514
Q gi|254780821|r 21 DRLPPVIHIGGT---NGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 21 ~~~~~vI~VtGT---nGKttt~~~i~~il~~~g~k~g~ 55 (429)
.|. ++|.|.+. -||||++.-++..|...|+||.+
T Consensus 4 ~~~-k~I~v~s~KGGvGKTTia~nlA~~La~~g~~Vll 40 (257)
T 1wcv_1 4 AKV-RRIALANQKGGVGKTTTAINLAAYLARLGKRVLL 40 (257)
T ss_dssp -CC-CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCC-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 787-6999986999876999999999999977998899
No 54
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A 2ng1_A*
Probab=90.49 E-value=0.38 Score=24.87 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=13.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 54447178988999986210566523
Q gi|254780821|r 181 IGHQVYDEVREILVSKAEKMGCPYNV 206 (429)
Q Consensus 181 ~~~~~~~~~~~~i~~~a~~~~~~~~~ 206 (429)
..+.......+.++..+...+++++.
T Consensus 133 ~~Dt~R~~A~eQL~~~a~~~~v~~~~ 158 (295)
T 1ls1_A 133 AADTQRPAAREQLRLLGEKVGVPVLE 158 (295)
T ss_dssp ECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred ECCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 41455533899999999864963895
No 55
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.40 E-value=0.42 Score=24.58 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=17.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 31544471789889999862105665235
Q gi|254780821|r 179 VVIGHQVYDEVREILVSKAEKMGCPYNVY 207 (429)
Q Consensus 179 ~v~~~~~~~~~~~~i~~~a~~~~~~~~~~ 207 (429)
++..+...+...+.++..+...+++++..
T Consensus 131 l~a~Dt~R~aA~eQL~~~a~~~~v~~~~~ 159 (297)
T 1j8m_F 131 LVGADVYRPAALEQLQQLGQQIGVPVYGE 159 (297)
T ss_dssp EEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 12115654448999999863139515423
No 56
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=89.26 E-value=0.26 Score=25.82 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHCCCHH-HH---CCCEEEEEC---CCCHHHHHHHHHHHHHH------CCCCEEE
Q ss_conf 88899999998729958-83---598399945---89847999999999999------7893514
Q gi|254780821|r 4 DSLLKMGYLLEDLGRPQ-DR---LPPVIHIGG---TNGKGSVASFSQRLLET------SGLSVHV 55 (429)
Q Consensus 4 ~~l~r~~~ll~~lg~P~-~~---~~~vI~VtG---TnGKttt~~~i~~il~~------~g~k~g~ 55 (429)
-||..+..+.+..|-|. ++ -..||+|+- =-||||||..+++.|.. .|+||.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~r~~~~~~~VIav~n~KGGvGKTT~avnLA~~LA~~~~~~~~G~rVLl 151 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILV 151 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEE
T ss_pred EEHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEE
T ss_conf 43999999999707998778899976999968177207999999999999843156658996899
No 57
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=88.60 E-value=0.15 Score=27.26 Aligned_cols=42 Identities=26% Similarity=0.296 Sum_probs=31.7
Q ss_pred HHHHHHHCCCHHHHCCCEEEEECC--CCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 999998729958835983999458--984799999999999978935141
Q gi|254780821|r 9 MGYLLEDLGRPQDRLPPVIHIGGT--NGKGSVASFSQRLLETSGLSVHVH 56 (429)
Q Consensus 9 ~~~ll~~lg~P~~~~~~vI~VtGT--nGKttt~~~i~~il~~~g~k~g~~ 56 (429)
++.|++ +| .+ ++|-|+|- -|||||+.-++.-|...|+||-+-
T Consensus 10 ~~~~~~---~~--~~-r~i~~~GKGGVGKTT~a~~lA~~lA~~G~rVLlv 53 (329)
T 2woo_A 10 LENLLE---QT--SL-KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI 53 (329)
T ss_dssp THHHHH---CT--TC-CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEE
T ss_pred HHHHHC---CC--CC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 898745---77--71-6999969986829999999999999689918999
No 58
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.05 E-value=0.52 Score=23.99 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=32.5
Q ss_pred HHHHHH--HHHCCCHHHHCCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 999999--987299588359839994---5898479999999999997893514
Q gi|254780821|r 7 LKMGYL--LEDLGRPQDRLPPVIHIG---GTNGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 7 ~r~~~l--l~~lg~P~~~~~~vI~Vt---GTnGKttt~~~i~~il~~~g~k~g~ 55 (429)
+|++.+ +.+.-+|.++- -||.|+ |=-||||++..++..|..+|+||.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~-~ii~v~s~KGGvGKTT~a~nlA~~LA~~G~rVll 70 (298)
T 2oze_A 18 EELKILEELRRILSNKNEA-IVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLM 70 (298)
T ss_dssp HHHHHHHHHHHHHHHHCSC-EEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHCCCCCE-EEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 6657789988764478861-9999758989818999999999999977990899
No 59
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=87.33 E-value=0.56 Score=23.77 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=27.7
Q ss_pred HHHCCCEEEEECC--CCHHHHHHHHHHH--HHHCCCCEEEEE
Q ss_conf 8835983999458--9847999999999--999789351413
Q gi|254780821|r 20 QDRLPPVIHIGGT--NGKGSVASFSQRL--LETSGLSVHVHT 57 (429)
Q Consensus 20 ~~~~~~vI~VtGT--nGKttt~~~i~~i--l~~~g~k~g~~t 57 (429)
+..+ ++|-|+|- -||||++..++.- |...|+||.+..
T Consensus 15 ~~~~-r~i~~sGKGGvGKTT~a~~lA~~lalA~~G~rVLlvD 55 (348)
T 3io3_A 15 HDSL-KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp CTTC-SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 8884-5999968985729999999999999995899199994
No 60
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=86.31 E-value=0.7 Score=23.19 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=26.8
Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 839994589--8479999999999997893514
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~ 55 (429)
-||+|+|-| ||||....|...|...|.+|..
T Consensus 3 ~Ii~ivG~nGsGKTTLl~~l~g~l~~~~g~V~~ 35 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAV 35 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 599998599988999999997102779977999
No 61
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima}
Probab=86.13 E-value=0.66 Score=23.35 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=32.4
Q ss_pred HHHHC-CCHHHHCCCEEEEECCC------CHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99872-99588359839994589------8479999999999997893514
Q gi|254780821|r 12 LLEDL-GRPQDRLPPVIHIGGTN------GKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 12 ll~~l-g~P~~~~~~vI~VtGTn------GKttt~~~i~~il~~~g~k~g~ 55 (429)
.++++ ++|.-| .|-||+.| |||||+-=|.+-|...|+|+-.
T Consensus 33 ~~~~~~~~~~gk---lilVTaitPTp~GEGKtTttiGL~~aL~~~gk~~~~ 80 (543)
T 3do6_A 33 FLKSLENHEDGK---LILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIV 80 (543)
T ss_dssp HHHHTTTSCCCE---EEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHCCCCCCE---EEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 766531389963---999973588888888520089899998752874379
No 62
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A*
Probab=85.93 E-value=0.99 Score=22.27 Aligned_cols=10 Identities=40% Similarity=0.667 Sum_probs=5.4
Q ss_pred EEEEECCCCC
Q ss_conf 5141378411
Q gi|254780821|r 53 VHVHTSPHLI 62 (429)
Q Consensus 53 ~g~~tSPhl~ 62 (429)
-.+|.||...
T Consensus 5 ~~~~~sp~~~ 14 (296)
T 2px0_A 5 HHHHSSPKIE 14 (296)
T ss_dssp ----------
T ss_pred CCCCCCCCCC
T ss_conf 4466899743
No 63
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=85.00 E-value=0.9 Score=22.52 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=24.4
Q ss_pred EEEEEC---CCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 399945---898479999999999997893514
Q gi|254780821|r 26 VIHIGG---TNGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 26 vI~VtG---TnGKttt~~~i~~il~~~g~k~g~ 55 (429)
||+|++ =-||||++..++.-|...| ||.+
T Consensus 2 vI~v~s~KGGvGKTT~a~nLA~~La~~G-kVll 33 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLL 33 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCC-CEEE
T ss_conf 8999829998749999999999999689-9899
No 64
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=84.46 E-value=0.65 Score=23.40 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=25.4
Q ss_pred CEEEEEC--CCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8399945--898479999999999997893514
Q gi|254780821|r 25 PVIHIGG--TNGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 25 ~vI~VtG--TnGKttt~~~i~~il~~~g~k~g~ 55 (429)
+.|+|.| =-||||++.-++..|.+.|+||.+
T Consensus 2 ~~Iai~gKGGVGKTT~a~nLA~~La~~G~rVLl 34 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMV 34 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 799998999876999999999999978997899
No 65
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.20A {Chlorobium tepidum tls}
Probab=84.16 E-value=0.72 Score=23.12 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=25.9
Q ss_pred CCEEEEECCC---CHHHHHHHHHHHHHH-CCCCEEE
Q ss_conf 9839994589---847999999999999-7893514
Q gi|254780821|r 24 PPVIHIGGTN---GKGSVASFSQRLLET-SGLSVHV 55 (429)
Q Consensus 24 ~~vI~VtGTn---GKttt~~~i~~il~~-~g~k~g~ 55 (429)
.+||+|+|++ ||||++.-++..|.. .|+||-+
T Consensus 4 ~riI~v~s~kGGvGkTt~a~nlA~~La~~~~~~vll 39 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLA 39 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 879999899997659999999999999868998999
No 66
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=84.10 E-value=1.8 Score=20.66 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=28.4
Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 839994589--8479999999999997893514137
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSVHVHTS 58 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~tS 58 (429)
.||.+.|-| |||||++=++..+...|+||++-+.
T Consensus 101 ~vi~~vG~~G~GKTTT~aKLA~~~~~~g~kv~lva~ 136 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 136 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEC
T ss_conf 289996678897232799999999976994246531
No 67
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A*
Probab=83.99 E-value=0.53 Score=23.93 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=26.0
Q ss_pred HCCCH----HHHCCCEEEEECC--CCHHHHHHHHHHHHHHCCC
Q ss_conf 72995----8835983999458--9847999999999999789
Q gi|254780821|r 15 DLGRP----QDRLPPVIHIGGT--NGKGSVASFSQRLLETSGL 51 (429)
Q Consensus 15 ~lg~P----~~~~~~vI~VtGT--nGKttt~~~i~~il~~~g~ 51 (429)
-||.+ ..+-+=||+|+|. .||||+|..|..+|...+.
T Consensus 77 fl~~~~~~~~~~~PfIIGIaG~sgSGKST~a~~L~~lL~~~~~ 119 (312)
T 3aez_A 77 FLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp HTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred HHCCHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 8606543578999889998898987899999999999853078
No 68
>1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP binding, formate binding, monovalent cation binding, ligase; 2.50A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fpm_A 1fp7_A
Probab=83.69 E-value=0.99 Score=22.28 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=31.5
Q ss_pred HHHHC-CCHHHHCCCEEEEECCC------CHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99872-99588359839994589------8479999999999997893514
Q gi|254780821|r 12 LLEDL-GRPQDRLPPVIHIGGTN------GKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 12 ll~~l-g~P~~~~~~vI~VtGTn------GKttt~~~i~~il~~~g~k~g~ 55 (429)
+++++ ++|+.|| |-||+.| |||||+-=|.+-|...|+++-.
T Consensus 47 ~~~~~~~~~~gkl---ilVtaitPTp~GEGKtTttiGL~~al~~lg~~~~~ 94 (557)
T 1eg7_A 47 VYRRLKDKPDGKL---ILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMV 94 (557)
T ss_dssp HHHHHTTSCCCEE---EEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHCCCCCCEE---EEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 7643123899708---99984588887886030799999999870985389
No 69
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=83.60 E-value=0.76 Score=22.96 Aligned_cols=42 Identities=29% Similarity=0.274 Sum_probs=27.8
Q ss_pred HHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9999872995883598399945898479999999999997893514
Q gi|254780821|r 10 GYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 10 ~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~ 55 (429)
..+...++++ +.=+.|-+|| ||||+...+...++..|+++-+
T Consensus 196 ~Av~~~~~~~---~~~i~G~aGT-GKTt~l~~i~~~~~~~~~~v~~ 237 (574)
T 3e1s_A 196 SVLDQLAGHR---LVVLTGGPGT-GKSTTTKAVADLAESLGLEVGL 237 (574)
T ss_dssp HHHHHHTTCS---EEEEECCTTS-CHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHCCC---EEEEECCCCC-HHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999970598---8999899860-0999999999999867984998
No 70
>2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli}
Probab=82.83 E-value=2 Score=20.34 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=26.7
Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHH-CCCCEEEEE
Q ss_conf 839994589--847999999999999-789351413
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLET-SGLSVHVHT 57 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~-~g~k~g~~t 57 (429)
.||-+.|-| |||||++=+++.++. .|++|++-+
T Consensus 100 ~VIm~VGvnGsGKTTTiaKLA~~~k~k~~kkVllva 135 (430)
T 2j28_9 100 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 135 (430)
T ss_dssp CEEEEECSSSSSSTTTHHHHHHHHHTSSSCCCCBCC
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 599997568998554299999999994798589995
No 71
>2g0t_A Conserved hypothetical protein; TM0796, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=80.92 E-value=1.8 Score=20.60 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=13.5
Q ss_pred CCEEEEECCCC--CCCHHH-HHHHHH-HHCCEEEEEEE
Q ss_conf 71243113467--989899-999888-63888999842
Q gi|254780821|r 322 KPFYLVIGMVE--GKKYGR-YLEAFV-ELSPIVLSVSL 355 (429)
Q Consensus 322 ~~i~~I~G~~~--dKd~~~-~l~~l~-~~~d~i~~~~~ 355 (429)
..+++|=|-.+ .=-+.. -+..+. ..-|.++.+-.
T Consensus 245 ~d~iiIEGQGSL~hP~ys~vtl~LL~Gs~Pd~lIL~H~ 282 (350)
T 2g0t_A 245 KEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHD 282 (350)
T ss_dssp CSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECC
T ss_pred CCEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEC
T ss_conf 98799888554126765324699870569987999506
No 72
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=80.46 E-value=1.3 Score=21.53 Aligned_cols=31 Identities=35% Similarity=0.479 Sum_probs=27.8
Q ss_pred CEEEEEC----CCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8399945----898479999999999997893514
Q gi|254780821|r 25 PVIHIGG----TNGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 25 ~vI~VtG----TnGKttt~~~i~~il~~~g~k~g~ 55 (429)
+.|-||| +=|||-|++.+..+|++.|++|-.
T Consensus 24 KyIfVtGGV~SglGKGi~aaSig~lLk~~g~~V~~ 58 (294)
T 2c5m_A 24 KYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (294)
T ss_dssp EEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEEC
T ss_pred EEEEEECCEECCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 59999188303664079999999999977971467
No 73
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP}
Probab=80.11 E-value=1.1 Score=21.88 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=27.9
Q ss_pred EEEEECC--CCHHHHHHHHHHHHHHCCCCEEEE--ECCCC
Q ss_conf 3999458--984799999999999978935141--37841
Q gi|254780821|r 26 VIHIGGT--NGKGSVASFSQRLLETSGLSVHVH--TSPHL 61 (429)
Q Consensus 26 vI~VtGT--nGKttt~~~i~~il~~~g~k~g~~--tSPhl 61 (429)
+|-.+|. -||||++.-++..|...|+||-+- +.|.+
T Consensus 4 Ii~f~GKGGVGKTT~aa~lA~~lA~~G~rvLlvs~~dp~~ 43 (374)
T 3igf_A 4 ILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGLAEPVL 43 (374)
T ss_dssp EEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEECSCSHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf 9999899877299999999999997899689996798644
No 74
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=79.92 E-value=1.3 Score=21.45 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=24.0
Q ss_pred EEEEC--CCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99945--898479999999999997893514
Q gi|254780821|r 27 IHIGG--TNGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 27 I~VtG--TnGKttt~~~i~~il~~~g~k~g~ 55 (429)
|+|.| =-||||++.-++..|...|+||.+
T Consensus 3 Iav~gKGGvGKTt~a~~lA~~la~~g~~Vll 33 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYA 33 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9998988227999999999999968996899
No 75
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D*
Probab=79.79 E-value=2.4 Score=19.87 Aligned_cols=23 Identities=9% Similarity=0.032 Sum_probs=10.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 44717898899998621056652
Q gi|254780821|r 183 HQVYDEVREILVSKAEKMGCPYN 205 (429)
Q Consensus 183 ~~~~~~~~~~i~~~a~~~~~~~~ 205 (429)
+...+...+.++..+...+++++
T Consensus 139 Dt~R~ga~eQL~~~a~~~~v~~~ 161 (304)
T 1rj9_A 139 DTFRAAGGTQLSEWGKRLSIPVI 161 (304)
T ss_dssp CCSSTTTTHHHHHHHHHHTCCEE
T ss_pred CCCCCHHHHHHHHHCCCCCCEEE
T ss_conf 42000067899985655685079
No 76
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=79.70 E-value=2.6 Score=19.66 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=26.6
Q ss_pred CEEEEEC----CCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8399945----898479999999999997893514
Q gi|254780821|r 25 PVIHIGG----TNGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 25 ~vI~VtG----TnGKttt~~~i~~il~~~g~k~g~ 55 (429)
+.|-||| +=|||-|++.+..+|++.|+||-.
T Consensus 4 KyifVtGGV~S~lGKGi~~aSig~lL~~~G~~V~~ 38 (535)
T 3nva_A 4 KYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTA 38 (535)
T ss_dssp EEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 19999087111573089999999999978976778
No 77
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=78.67 E-value=1.1 Score=21.96 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=26.9
Q ss_pred CEEEEEC--CCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8399945--898479999999999997893514
Q gi|254780821|r 25 PVIHIGG--TNGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 25 ~vI~VtG--TnGKttt~~~i~~il~~~g~k~g~ 55 (429)
++|-|+| =-||||++.-++..|...|+||.+
T Consensus 17 r~if~sGKGGVGKTT~aanlA~~lA~~G~rVLl 49 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLL 49 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 699997999771999999999999978994899
No 78
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5'-triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=78.22 E-value=2.4 Score=19.90 Aligned_cols=31 Identities=35% Similarity=0.538 Sum_probs=26.3
Q ss_pred CEEEEEC----CCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8399945----898479999999999997893514
Q gi|254780821|r 25 PVIHIGG----TNGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 25 ~vI~VtG----TnGKttt~~~i~~il~~~g~k~g~ 55 (429)
+.|-||| +=|||.|++.+..+|++.|++|-.
T Consensus 4 kyifVtGGV~S~lGKGi~~aSig~lLk~~g~~v~~ 38 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTI 38 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 19999187211573089999999999978975778
No 79
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=78.16 E-value=1.4 Score=21.38 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=26.2
Q ss_pred HHHHHHHHHHC-CCHH-HHCCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 89999999872-9958-8359839994589847999999999999
Q gi|254780821|r 6 LLKMGYLLEDL-GRPQ-DRLPPVIHIGGTNGKGSVASFSQRLLET 48 (429)
Q Consensus 6 l~r~~~ll~~l-g~P~-~~~~~vI~VtGTnGKttt~~~i~~il~~ 48 (429)
+..+..++... .++. ..+ =+.|..|| ||||++..+.+-|..
T Consensus 29 ~~~l~~~l~~~i~~~~~~~~-li~GppG~-GKTtlar~v~~~L~~ 71 (384)
T 2qby_B 29 LRDAAIAIRYFVKNEVKFSN-LFLGLTGT-GKTFVSKYIFNEIEE 71 (384)
T ss_dssp HHHHHHHHHHHHTTCCCCEE-EEEECTTS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCEE-EEECCCCC-CHHHHHHHHHHHHHH
T ss_conf 99999999999709998608-99879988-299999999999876
No 80
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=78.04 E-value=1.9 Score=20.59 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=19.4
Q ss_pred CEEEEECC--CCHHHHHHHHHHHHHHCCCCE
Q ss_conf 83999458--984799999999999978935
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLLETSGLSV 53 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il~~~g~k~ 53 (429)
.+|+|||. .||||+|.++ ...|++|
T Consensus 5 ~IIgItG~igSGKStva~~l----~~~G~~v 31 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF----ADLGINV 31 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH----HHTTCEE
T ss_pred EEEEEECCCCCCHHHHHHHH----HHCCCCE
T ss_conf 69998798878799999999----9879919
No 81
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=77.82 E-value=1.2 Score=21.77 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=24.0
Q ss_pred CCCHHHHCCCEEEEECC--CCHHHHHHHHHHHHHHCC
Q ss_conf 29958835983999458--984799999999999978
Q gi|254780821|r 16 LGRPQDRLPPVIHIGGT--NGKGSVASFSQRLLETSG 50 (429)
Q Consensus 16 lg~P~~~~~~vI~VtGT--nGKttt~~~i~~il~~~g 50 (429)
++++++- -||+|||. .||||.|..|...|...+
T Consensus 19 ~~~~~kP--~IIgI~G~~gSGKSTla~~L~~~l~~~~ 53 (245)
T 2jeo_A 19 YFQSMRP--FLIGVSGGTASGKSTVCEKIMELLGQNE 53 (245)
T ss_dssp ----CCS--EEEEEECSTTSSHHHHHHHHHHHHTGGG
T ss_pred HHCCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 6289995--8999889898889999999999856154
No 82
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=76.79 E-value=2.8 Score=19.50 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=27.6
Q ss_pred CCEEEEEC----CCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 98399945----898479999999999997893514
Q gi|254780821|r 24 PPVIHIGG----TNGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 24 ~~vI~VtG----TnGKttt~~~i~~il~~~g~k~g~ 55 (429)
.+.|-||| +=|||-|++.+..+|++.|++|-.
T Consensus 12 ~KyifVtGGV~S~lGKGi~aaSig~lLk~~g~~V~~ 47 (550)
T 1vco_A 12 RKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTA 47 (550)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 059998387121573089999999999978975778
No 83
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=76.60 E-value=2.5 Score=19.81 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=25.4
Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCEE
Q ss_conf 839994589--847999999999999789351
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSVH 54 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~g 54 (429)
++|.|+|.. ||||.+..|+..|...|+.+.
T Consensus 4 ~iI~i~G~~GsGKTT~~~~L~~~l~~~~~~~~ 35 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK 35 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 88999899995989999999999876599769
No 84
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=75.51 E-value=3.4 Score=18.92 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=56.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEE--EECC-CC-CCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 4599933632157998886543311477771243--1134-67-989899999888638889998422889984212789
Q gi|254780821|r 293 SEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYL--VIGM-VE-GKKYGRYLEAFVELSPIVLSVSLICRGRERQSISIT 368 (429)
Q Consensus 293 ~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~--I~G~-~~-dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~ 368 (429)
..=++|++.+|.. +.+.+.++-+...++-+.++ |||. ++ |-=.+.+++.+.+....+ +++. +-.+..
T Consensus 290 pANFlD~GG~a~~-e~v~~a~~iil~d~~vk~iliNIfGGI~~cd~vA~GIi~A~~e~~~~v---pivV-----Rl~Gtn 360 (395)
T 2fp4_B 290 PANFLDLGGGVKE-SQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKV---PLVV-----RLEGTN 360 (395)
T ss_dssp BCEEEECCSSCCH-HHHHHHHHHHHHCTTCCEEEEEEEESSSCHHHHHHHHHHHHHHHTCCS---CEEE-----EEEETT
T ss_pred CCEEEECCCCCCH-HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC---CEEE-----ECCCCC
T ss_conf 3315641788878-999999999963999878999980873035999999999999619998---7899-----999899
Q ss_pred HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCC
Q ss_conf 899999998549978996998999999998603
Q gi|254780821|r 369 PKVLMQEAKKLGFQAMACSSMIEALSRVRKINE 401 (429)
Q Consensus 369 ~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~ 401 (429)
.++-.+.++..+.++..++++++|.+.+.+...
T Consensus 361 ~~eg~~iL~~sgl~i~~~~~l~~A~~kaV~~~~ 393 (395)
T 2fp4_B 361 VHEAQNILTNSGLPITSAVDLEDAAKKAVASVT 393 (395)
T ss_dssp HHHHHHHHHHTCSCCEECSSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 899999999779974874899999999999963
No 85
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Aeropyrum pernix K1}
Probab=75.49 E-value=3.4 Score=18.91 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=26.6
Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 839994589--84799999999999978935141
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSVHVH 56 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~ 56 (429)
-+|-+||.- ||||.+..|+.-|...++.++.+
T Consensus 14 ~iI~itG~~GSGKSTlAk~La~~L~~~~~~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 5999899999999999999999984238971110
No 86
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=75.48 E-value=2.1 Score=20.26 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=25.0
Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 839994589--8479999999999997893514
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~ 55 (429)
++|-|+|.. ||||.+..|+..|...|+.+-.
T Consensus 2 kiivi~G~~GsGKsT~~~~L~~~l~~~~~~~~~ 34 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKI 34 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 299998999979899999999999875997799
No 87
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3idq_A 3a36_A 3a37_A*
Probab=74.63 E-value=2.6 Score=19.67 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=25.6
Q ss_pred CEEEEECC--CCHHHHHHHHHHHHHH--CCCCEEEE
Q ss_conf 83999458--9847999999999999--78935141
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLLET--SGLSVHVH 56 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il~~--~g~k~g~~ 56 (429)
++|-|+|- -||||++..++..|.. .|+||.+-
T Consensus 19 r~i~~sGKGGVGKTT~a~~lA~~LA~~~~G~rVLlv 54 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLI 54 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 799997999880999999999999986589959999
No 88
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme A kinase, structural genomics, joint center for structural genomics, JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=74.38 E-value=2.1 Score=20.20 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=18.9
Q ss_pred EEEEECC--CCHHHHHHHHHHHHHHCCCCE
Q ss_conf 3999458--984799999999999978935
Q gi|254780821|r 26 VIHIGGT--NGKGSVASFSQRLLETSGLSV 53 (429)
Q Consensus 26 vI~VtGT--nGKttt~~~i~~il~~~g~k~ 53 (429)
+|||||. .||||+|.+++.- .|++|
T Consensus 14 IIgiTG~igSGKStv~~~l~~~---~g~~v 40 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK---YGAHV 40 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH---HCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH---CCCEE
T ss_conf 9998789878899999999885---39989
No 89
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=74.19 E-value=2.2 Score=20.09 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=19.1
Q ss_pred CEEEEECC--CCHHHHHHHHHHHHHHCCCCE
Q ss_conf 83999458--984799999999999978935
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLLETSGLSV 53 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il~~~g~k~ 53 (429)
.+|+|||. .||||.|.++ +..|+.|
T Consensus 3 ~iIgitG~igSGKStv~~~l----~~~G~~v 29 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLF----TDLGVPL 29 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHH----HTTTCCE
T ss_pred EEEEEECCCCCCHHHHHHHH----HHCCCEE
T ss_conf 89998899876699999999----9889969
No 90
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=73.24 E-value=2.3 Score=19.97 Aligned_cols=34 Identities=35% Similarity=0.445 Sum_probs=26.2
Q ss_pred CCCHHHHCCCEEEEECCC--CHHHHHHHHHHHHHHCCCC
Q ss_conf 299588359839994589--8479999999999997893
Q gi|254780821|r 16 LGRPQDRLPPVIHIGGTN--GKGSVASFSQRLLETSGLS 52 (429)
Q Consensus 16 lg~P~~~~~~vI~VtGTn--GKttt~~~i~~il~~~g~k 52 (429)
|+.||-...|-|-|+|.- ||||.|..|+.-| |+.
T Consensus 3 ~~~~~~~~~pnI~i~G~pG~GKTTiak~La~~l---~~~ 38 (180)
T 3iij_A 3 LGSPEFMLLPNILLTGTPGVGKTTLGKELASKS---GLK 38 (180)
T ss_dssp ---CTTCCCCCEEEECSTTSSHHHHHHHHHHHH---CCE
T ss_pred CCCHHHHCCCCEEEECCCCCCHHHHHHHHHHHH---CCC
T ss_conf 997246608957998999988899999999996---998
No 91
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=71.32 E-value=2.5 Score=19.83 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=18.2
Q ss_pred CEEEEECC--CCHHHHHHHHHHHHHHCCC
Q ss_conf 83999458--9847999999999999789
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLLETSGL 51 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il~~~g~ 51 (429)
++|++||. .||+|+|.|+.. ..|+
T Consensus 2 ~iIgltG~~gSGKsTva~~L~e---~~g~ 27 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMS---NYSA 27 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH---HSCE
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HCCC
T ss_conf 7999779998889999999999---7599
No 92
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=69.34 E-value=4.1 Score=18.42 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=21.4
Q ss_pred HCCCEEEEECC--CCHHHHHHHHHHHH
Q ss_conf 35983999458--98479999999999
Q gi|254780821|r 22 RLPPVIHIGGT--NGKGSVASFSQRLL 46 (429)
Q Consensus 22 ~~~~vI~VtGT--nGKttt~~~i~~il 46 (429)
+..|||+|-|. .||||++.+|+.=|
T Consensus 3 ~~~pIIaIDGPagSGKST~ak~LA~~L 29 (227)
T 1cke_A 3 AIAPVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CCSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 889789977898678899999999991
No 93
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=69.15 E-value=4.7 Score=18.08 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=25.8
Q ss_pred EEEECC--CCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 999458--984799999999999978935141378
Q gi|254780821|r 27 IHIGGT--NGKGSVASFSQRLLETSGLSVHVHTSP 59 (429)
Q Consensus 27 I~VtGT--nGKttt~~~i~~il~~~g~k~g~~tSP 59 (429)
|.|.|- .||||.+.+|..-|++.|++|-.+--|
T Consensus 3 I~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~P 37 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99989988889999999999999779988997699
No 94
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=68.11 E-value=3.3 Score=19.00 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=20.9
Q ss_pred EEEEECC--CCHHHHHHHHHHHHHHCC
Q ss_conf 3999458--984799999999999978
Q gi|254780821|r 26 VIHIGGT--NGKGSVASFSQRLLETSG 50 (429)
Q Consensus 26 vI~VtGT--nGKttt~~~i~~il~~~g 50 (429)
||+|||. .||||.|..|...|...+
T Consensus 24 IIgItG~~gSGKSTla~~L~~~l~~~~ 50 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 999889898859999999999966123
No 95
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=67.62 E-value=3.8 Score=18.65 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=18.5
Q ss_pred CEEEEECC--CCHHHHHHHHHHHH
Q ss_conf 83999458--98479999999999
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLL 46 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il 46 (429)
-||+|||. .||||.|.++..-+
T Consensus 12 ~II~ItG~~GSGKsTva~~L~e~~ 35 (202)
T 3ch4_B 12 LVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 899988979999999999999972
No 96
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=66.68 E-value=5.4 Score=17.70 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=26.1
Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 839994589--84799999999999978935141
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSVHVH 56 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~ 56 (429)
..|.|.|-. ||||.+..|+.-|.+.|+++...
T Consensus 11 ~~I~ieG~dGsGKtT~~~~L~e~L~~~g~~v~~~ 44 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHL 44 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 5999989988899999999999998779966899
No 97
>1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=65.79 E-value=5.7 Score=17.59 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=27.1
Q ss_pred CEEEEECC--CCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 83999458--984799999999999978935141378
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLLETSGLSVHVHTSP 59 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il~~~g~k~g~~tSP 59 (429)
..|.|.|- .||||.+..|+.-|.+.|+++-.+.-|
T Consensus 10 ~~I~ieG~dGsGKST~~~~L~~~L~~~g~~~~~~~~~ 46 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP 46 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 5999989988889999999999998679966998649
No 98
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus VF5}
Probab=65.37 E-value=5.8 Score=17.54 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=25.0
Q ss_pred EEEEECC--CCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3999458--9847999999999999789351413
Q gi|254780821|r 26 VIHIGGT--NGKGSVASFSQRLLETSGLSVHVHT 57 (429)
Q Consensus 26 vI~VtGT--nGKttt~~~i~~il~~~g~k~g~~t 57 (429)
.|.|.|- -||||.+..|+.-|++.|+++-.+.
T Consensus 2 ~I~ieG~~GsGKsT~~~~L~~~L~~~g~~v~~~~ 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8999889989899999999999987799489986
No 99
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=63.46 E-value=6.3 Score=17.32 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=19.1
Q ss_pred EEEEECC--CCHHHHHHHHHHHHHH
Q ss_conf 3999458--9847999999999999
Q gi|254780821|r 26 VIHIGGT--NGKGSVASFSQRLLET 48 (429)
Q Consensus 26 vI~VtGT--nGKttt~~~i~~il~~ 48 (429)
+|+|+|. .||||+|..|...|.+
T Consensus 33 iIgiaG~~GSGKSTla~~l~~~l~~ 57 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9996789878899999999999997
No 100
>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A*
Probab=62.34 E-value=2.4 Score=19.86 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=19.7
Q ss_pred CHHHHCCCEEEEECCCCHHHHHHH-HHHHHHHCCC
Q ss_conf 958835983999458984799999-9999999789
Q gi|254780821|r 18 RPQDRLPPVIHIGGTNGKGSVASF-SQRLLETSGL 51 (429)
Q Consensus 18 ~P~~~~~~vI~VtGTnGKttt~~~-i~~il~~~g~ 51 (429)
+|...+ -|++-+|| |||||-.- +..++...|.
T Consensus 20 ~~~~~~-lV~AgAGS-GKT~tL~~ri~~Li~~~~~ 52 (680)
T 2is6_A 20 APRSNL-LVLAGAGS-GKTRVLVHRIAWLMSVENC 52 (680)
T ss_dssp CCSSCE-EEECCTTS-SHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCE-EEEEECCH-HHHHHHHHHHHHHHHHCCC
T ss_conf 999998-99984864-8999999999999980999
No 101
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=62.22 E-value=3.6 Score=18.83 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=19.8
Q ss_pred HHHHCCCEEEEECCC--CHHHHHHHHHHHH
Q ss_conf 588359839994589--8479999999999
Q gi|254780821|r 19 PQDRLPPVIHIGGTN--GKGSVASFSQRLL 46 (429)
Q Consensus 19 P~~~~~~vI~VtGTn--GKttt~~~i~~il 46 (429)
|.++ ++|-|+|.. ||||++..|+.-|
T Consensus 2 pm~~--~iI~i~G~sGsGKSTva~~La~~l 29 (183)
T 2vli_A 2 PMRS--PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp ---C--CEEEEECCC----CHHHHHHHHHS
T ss_pred CCCC--EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988--089999998834999999999983
No 102
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), structural genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=61.42 E-value=4.6 Score=18.12 Aligned_cols=42 Identities=29% Similarity=0.345 Sum_probs=24.8
Q ss_pred HHHHHHHHHCCC----HH--HHCCCEEEEECC--CCHHHHHHHHHHHHHHCCCCE
Q ss_conf 999999987299----58--835983999458--984799999999999978935
Q gi|254780821|r 7 LKMGYLLEDLGR----PQ--DRLPPVIHIGGT--NGKGSVASFSQRLLETSGLSV 53 (429)
Q Consensus 7 ~r~~~ll~~lg~----P~--~~~~~vI~VtGT--nGKttt~~~i~~il~~~g~k~ 53 (429)
.|++.|=..|.. |+ .+. -+|++||- .||||.|.+++ ..|+.|
T Consensus 53 ~r~~~lg~~~~~~~~~~~~~~~~-~IIGLTGgigSGKStva~~L~----~~G~~v 102 (281)
T 2f6r_A 53 FRQRILGNLLQPPNERPELPSGL-YVLGLTGISGSGKSSVAQRLK----NLGAYI 102 (281)
T ss_dssp --CEETTSCCSCCCCCTTSCTTC-EEEEEEECTTSCHHHHHHHHH----HHTCEE
T ss_pred HHHHHHHHCCCCCCCCCCCCCCC-EEEEEECCCCCCHHHHHHHHH----HCCCCE
T ss_conf 89998663008876689999999-899987887521999999999----879969
No 103
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1}
Probab=60.51 E-value=7.1 Score=16.99 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=34.8
Q ss_pred HHHHHHC-CCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 9999872-9958835983999458984799999999999978935
Q gi|254780821|r 10 GYLLEDL-GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSV 53 (429)
Q Consensus 10 ~~ll~~l-g~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~ 53 (429)
..+.+++ |.|.++.+=+|+..+..+-+-=..|++.+|+.+|+.|
T Consensus 5 ~~~~~~~~~~p~rk~rvvia~~~~D~HdiG~~~va~~l~~~G~eV 49 (161)
T 2yxb_A 5 QSTRERVLGTPRRRYKVLVAKMGLDGHDRGAKVVARALRDAGFEV 49 (161)
T ss_dssp -----------CCSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 888988425998898799980498624788999999999789889
No 104
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=58.69 E-value=5.4 Score=17.72 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=24.2
Q ss_pred HHHHHCCCHHHHC-------CCEEEEECCCCHHHHHHH-HHHHHHHCCC
Q ss_conf 9998729958835-------983999458984799999-9999999789
Q gi|254780821|r 11 YLLEDLGRPQDRL-------PPVIHIGGTNGKGSVASF-SQRLLETSGL 51 (429)
Q Consensus 11 ~ll~~lg~P~~~~-------~~vI~VtGTnGKttt~~~-i~~il~~~g~ 51 (429)
.+|+.|...|++. .-|++.+|| |||+|-.. ++.++...|.
T Consensus 7 ~~l~~Ln~~Q~~av~~~~g~~lV~AgAGS-GKT~~L~~ri~~Li~~~~~ 54 (724)
T 1pjr_A 7 QLLAHLNKEQQEAVRTTEGPLLIMAGAGS-GKTRVLTHRIAYLMAEKHV 54 (724)
T ss_dssp HHHTTSCHHHHHHHHCCSSCEEEEECTTS-CHHHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCHHHHHHHCCCCCCEEEEEECCH-HHHHHHHHHHHHHHHCCCC
T ss_conf 99873689999997299989899982844-8999999999999980998
No 105
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=58.51 E-value=7.6 Score=16.78 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=26.8
Q ss_pred CEEEEECC--CCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 83999458--98479999999999997893514137
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLLETSGLSVHVHTS 58 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il~~~g~k~g~~tS 58 (429)
+.|.|-|- .||||-+..|+.-|.+.|+++-.++.
T Consensus 4 ~~I~ieG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ 39 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTR 39 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 189988999988999999999999977997599841
No 106
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=56.53 E-value=3.5 Score=18.85 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=15.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 39994589847999999999999
Q gi|254780821|r 26 VIHIGGTNGKGSVASFSQRLLET 48 (429)
Q Consensus 26 vI~VtGTnGKttt~~~i~~il~~ 48 (429)
+.|-+|| |||+++..+.+-+..
T Consensus 49 i~GppGt-GKT~~ar~la~~l~~ 70 (389)
T 1fnn_A 49 LLGRPGT-GKTVTLRKLWELYKD 70 (389)
T ss_dssp EECCTTS-SHHHHHHHHHHHHTT
T ss_pred EECCCCC-CHHHHHHHHHHHHHC
T ss_conf 9889999-699999999998531
No 107
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=56.35 E-value=3.6 Score=18.79 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=26.4
Q ss_pred EEEECC--CCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 999458--9847999999999999789351413784
Q gi|254780821|r 27 IHIGGT--NGKGSVASFSQRLLETSGLSVHVHTSPH 60 (429)
Q Consensus 27 I~VtGT--nGKttt~~~i~~il~~~g~k~g~~tSPh 60 (429)
|.|.|- .||||.+..|..-|.+.|++|-.+..|.
T Consensus 3 I~ieG~dGsGKST~~~~L~e~l~~~g~~v~~~~eP~ 38 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPR 38 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999899878999999999999987799789985699
No 108
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=53.88 E-value=4.4 Score=18.25 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=16.9
Q ss_pred CEEEEECCCCHHHHHHH-HHHHHHHCCC
Q ss_conf 83999458984799999-9999999789
Q gi|254780821|r 25 PVIHIGGTNGKGSVASF-SQRLLETSGL 51 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~-i~~il~~~g~ 51 (429)
-|++-+|| |||||-.- +..++...|.
T Consensus 19 lV~AgAGS-GKT~tL~~ri~~Ll~~~~~ 45 (673)
T 1uaa_A 19 LVLAGAGS-GKTRVITNKIAHLIRGCGY 45 (673)
T ss_dssp EECCCTTS-CHHHHHHHHHHHHHHHHCC
T ss_pred EEEEECCH-HHHHHHHHHHHHHHHCCCC
T ss_conf 99981854-8999999999999981898
No 109
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=52.77 E-value=7.6 Score=16.78 Aligned_cols=32 Identities=34% Similarity=0.591 Sum_probs=20.8
Q ss_pred CCHHHHCCCEEEEECC--CCHHHHHHHHHHHHHHCCCCE
Q ss_conf 9958835983999458--984799999999999978935
Q gi|254780821|r 17 GRPQDRLPPVIHIGGT--NGKGSVASFSQRLLETSGLSV 53 (429)
Q Consensus 17 g~P~~~~~~vI~VtGT--nGKttt~~~i~~il~~~g~k~ 53 (429)
||-.+. +=+|+|||. .||||.|.++ +..|+++
T Consensus 2 ~~~~k~-P~iIgItG~~GSGKsTva~~l----~~~g~~~ 35 (203)
T 1uf9_A 2 GHEAKH-PIIIGITGNIGSGKSTVAALL----RSWGYPV 35 (203)
T ss_dssp ----CC-CEEEEEEECTTSCHHHHHHHH----HHTTCCE
T ss_pred CCCCCC-CEEEEEECCCCCCHHHHHHHH----HHCCCEE
T ss_conf 988888-489999899877699999999----9879939
No 110
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class member, structural genomics; 2.20A {Eubacterium ventriosum atcc 27560}
Probab=52.72 E-value=9.3 Score=16.25 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=20.8
Q ss_pred CEEEEECC--CCHHHHHHHHHHHHHHCCCC
Q ss_conf 83999458--98479999999999997893
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLLETSGLS 52 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il~~~g~k 52 (429)
.||.|+|. -||||++..|+.-| |+.
T Consensus 7 ~iI~I~g~~GsGKstiak~LA~~L---g~~ 33 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY---NIP 33 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT---TCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHHH---CCC
T ss_conf 589866999998699999999995---991
No 111
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=51.49 E-value=9.9 Score=16.07 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=18.3
Q ss_pred EEEEECCCCHHHHHHH-HHHHHHHCCCCEEEEECCC
Q ss_conf 3999458984799999-9999999789351413784
Q gi|254780821|r 26 VIHIGGTNGKGSVASF-SQRLLETSGLSVHVHTSPH 60 (429)
Q Consensus 26 vI~VtGTnGKttt~~~-i~~il~~~g~k~g~~tSPh 60 (429)
|.+-||| |||-++.+ +...|. .|.+ .+|++|-
T Consensus 106 v~apTGS-GKT~va~~~i~~~l~-~~~r-vl~l~Pt 138 (1010)
T 2xgj_A 106 VSAHTSA-GKTVVAEYAIAQSLK-NKQR-VIYTSPI 138 (1010)
T ss_dssp EECCTTS-CHHHHHHHHHHHHHH-TTCE-EEEEESS
T ss_pred EEECCCC-HHHHHHHHHHHHHHH-CCCC-EEEECCH
T ss_conf 9908986-599999999999996-0995-9999896
No 112
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A*
Probab=50.74 E-value=10 Score=16.00 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.6
Q ss_pred CEEEEECC--CCHHHHHHHHHHHHH
Q ss_conf 83999458--984799999999999
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLLE 47 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il~ 47 (429)
++|.|.|. -||||.+.+|+.-|.
T Consensus 2 ~iI~i~G~~GsGKSTva~~La~~L~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 0999978999999999999999969
No 113
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=49.95 E-value=11 Score=15.92 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCCHHHHHHH
Q ss_conf 37983315444717898899
Q gi|254780821|r 174 KPGCPVVIGHQVYDEVREIL 193 (429)
Q Consensus 174 k~~~~~v~~~~~~~~~~~~i 193 (429)
-|+-.++++.+.++.+.+.+
T Consensus 122 HP~qf~vL~S~~~~vve~Si 141 (301)
T 2j6v_A 122 HPGQYVNPGSPDPEVVERSL 141 (301)
T ss_dssp CCCTTCCTTCSCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHH
T ss_conf 69855046899779999999
No 114
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=48.72 E-value=11 Score=15.80 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=25.3
Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 839994589--8479999999999997893514
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~ 55 (429)
-+|-++|.- ||||.+..|+..|...++.+..
T Consensus 6 ~~I~l~G~~GsGKSTia~~La~~L~~~~~~~~~ 38 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYT 38 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 799988999989999999999997445887410
No 115
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=48.45 E-value=11 Score=15.78 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=27.4
Q ss_pred HHHHHHHHHHCCCHHHHCCCEEEEEC--CCCHHHHHHHHHHHHH
Q ss_conf 89999999872995883598399945--8984799999999999
Q gi|254780821|r 6 LLKMGYLLEDLGRPQDRLPPVIHIGG--TNGKGSVASFSQRLLE 47 (429)
Q Consensus 6 l~r~~~ll~~lg~P~~~~~~vI~VtG--TnGKttt~~~i~~il~ 47 (429)
+.|+..+++.+|+.+-.+ |-|.|.| +.||+| +|.++|.
T Consensus 7 ~~~l~~~~~~l~~~~~~~-P~I~VvG~~ssGKSs---liNaLlG 46 (315)
T 1jwy_B 7 INKLQDVFNTLGSDPLDL-PQIVVVGSQSSGKSS---VLENIVG 46 (315)
T ss_dssp HHHHHHHTTTSSSCTTCC-CEEEEEECSSSSHHH---HHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCC-CEEEEEECCCCCHHH---HHHHHHC
T ss_conf 999999999727577888-859999188896999---9999968
No 116
>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=47.87 E-value=11 Score=15.72 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=17.2
Q ss_pred EECCCCHHHHHHH-HHHHHHHCCCCEEEEECCC
Q ss_conf 9458984799999-9999999789351413784
Q gi|254780821|r 29 IGGTNGKGSVASF-SQRLLETSGLSVHVHTSPH 60 (429)
Q Consensus 29 VtGTnGKttt~~~-i~~il~~~g~k~g~~tSPh 60 (429)
--|| |||+|..- +.+++...+.++ +.++|.
T Consensus 379 PPGT-GKT~Ti~~iI~~L~~~~~~kI-LVcApS 409 (800)
T 2wjy_A 379 PPGT-GKTVTSATIVYHLARQGNGPV-LVCAPS 409 (800)
T ss_dssp CTTS-CHHHHHHHHHHHHHTTCSSCE-EEEESS
T ss_pred CCCC-CHHHHHHHHHHHHHHHCCCCE-EEEECC
T ss_conf 9999-950999999999997068989-999486
No 117
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=47.45 E-value=12 Score=15.68 Aligned_cols=29 Identities=24% Similarity=0.474 Sum_probs=24.1
Q ss_pred EEEEECCC--CHHHHHHHHHHHHHHCCCCEE
Q ss_conf 39994589--847999999999999789351
Q gi|254780821|r 26 VIHIGGTN--GKGSVASFSQRLLETSGLSVH 54 (429)
Q Consensus 26 vI~VtGTn--GKttt~~~i~~il~~~g~k~g 54 (429)
-|.|||-+ ||||.+..+...++..+..+.
T Consensus 3 hi~I~G~~GsGKTTL~~~l~~~l~~~~~~v~ 33 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEC
T ss_conf 9999899982299999999866169969998
No 118
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, infectious diseases, center for structural genomics of infectious diseases; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=46.96 E-value=12 Score=15.63 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=26.9
Q ss_pred CEEEEECC--CCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 83999458--984799999999999978935141
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLLETSGLSVHVH 56 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il~~~g~k~g~~ 56 (429)
+.|.|.|- -||||-+..|+.-|.+.|+++...
T Consensus 28 kfIvieG~dGsGKSTq~~~L~~~L~~~g~~~~~~ 61 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITR 61 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9899989998849999999999999669985998
No 119
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=46.68 E-value=12 Score=15.61 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=57.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEE--EECC-CC-CCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 4599933632157998886543311477771243--1134-67-989899999888638889998422889984212789
Q gi|254780821|r 293 SEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYL--VIGM-VE-GKKYGRYLEAFVELSPIVLSVSLICRGRERQSISIT 368 (429)
Q Consensus 293 ~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~--I~G~-~~-dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~ 368 (429)
..=++|++-+|.. +.+.+.++.+...++-+.++ |||. ++ |-=...+++.+.+....+ +++.+ -.+..
T Consensus 283 pANfld~gG~a~~-e~v~~a~kiil~d~~vk~iliNIfGGI~rcd~vA~GIi~A~~~~~~~v---pivVR-----l~Gtn 353 (388)
T 2nu8_B 283 PANFLDVGGGATK-ERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNV---PVVVR-----LEGNN 353 (388)
T ss_dssp BCEEEECCSCCCH-HHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHHHHHHHHHHTCCS---CEEEE-----EESTT
T ss_pred CCEEEEECCCCCH-HHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCC---CEEEE-----CCCCC
T ss_conf 4226873699978-999999999865999658999960764558999999999999709998---78999-----99899
Q ss_pred HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCC
Q ss_conf 899999998549978996998999999998603
Q gi|254780821|r 369 PKVLMQEAKKLGFQAMACSSMIEALSRVRKINE 401 (429)
Q Consensus 369 ~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~ 401 (429)
.++-.+.+++.|.++..++++++|.+.+.+.++
T Consensus 354 ~eeg~~il~~~gl~i~~~~~l~~Aa~~~V~~~~ 386 (388)
T 2nu8_B 354 AELGAKKLADSGLNIIAAKGLTDAAQQVVAAVE 386 (388)
T ss_dssp HHHHHHHHHTTCSSEEECSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHC
T ss_conf 899999999789986870899999999999855
No 120
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=44.97 E-value=9.1 Score=16.32 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=24.0
Q ss_pred HHHHHHHHHC--CCHHHHCCCEEEEECCCCHHHHHHHHHHHHH--HCCCCEEEEECCC
Q ss_conf 9999999872--9958835983999458984799999999999--9789351413784
Q gi|254780821|r 7 LKMGYLLEDL--GRPQDRLPPVIHIGGTNGKGSVASFSQRLLE--TSGLSVHVHTSPH 60 (429)
Q Consensus 7 ~r~~~ll~~l--g~P~~~~~~vI~VtGTnGKttt~~~i~~il~--~~g~k~g~~tSPh 60 (429)
.-+..++..+ ++|.+.+ +.+.||| ||| .+++ -.++. ..|+.+. +.+|.
T Consensus 375 ~~~~~i~~d~~~~~~~~~L--lqa~TGS-GKT-lv~l-lpil~~i~~g~q~l-ilaPT 426 (780)
T 1gm5_A 375 RAHQEIRNDMISEKPMNRL--LQGDVGS-GKT-VVAQ-LAILDNYEAGFQTA-FMVPT 426 (780)
T ss_dssp HHHHHHHHHHHSSSCCCCE--EECCSSS-SHH-HHHH-HHHHHHHHHTSCEE-EECSC
T ss_pred HHHHHHHHHHCCCCCCEEE--EECCCCC-CCH-HHHH-HHHHHHHHCCCCEE-EEECC
T ss_conf 9999999986189875289--9817897-460-9999-99999986389559-99252
No 121
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=44.26 E-value=8.3 Score=16.56 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=15.9
Q ss_pred EEEEECCC--CHHHHHHHHHHHHHHC
Q ss_conf 39994589--8479999999999997
Q gi|254780821|r 26 VIHIGGTN--GKGSVASFSQRLLETS 49 (429)
Q Consensus 26 vI~VtGTn--GKttt~~~i~~il~~~ 49 (429)
.|-|+|-- ||||++..+.+-|...
T Consensus 47 ~ili~GppGtGKT~l~~~la~~l~~~ 72 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 08998799881999999999998752
No 122
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=43.55 E-value=13 Score=15.31 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=18.2
Q ss_pred CEEEEECC--CCHHHHHHHHHHHHH
Q ss_conf 83999458--984799999999999
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLLE 47 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il~ 47 (429)
-||+|+|- .||||.|.+|+.-|.
T Consensus 22 ~iI~I~G~~GSGKTTla~~L~~~l~ 46 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTST
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9999989898859999999999859
No 123
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=43.38 E-value=11 Score=15.82 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHCCCCE
Q ss_conf 799999999999978935
Q gi|254780821|r 36 GSVASFSQRLLETSGLSV 53 (429)
Q Consensus 36 ttt~~~i~~il~~~g~k~ 53 (429)
.|...+|-..|+.+|-.+
T Consensus 28 ~t~~~~id~~l~~agw~~ 45 (590)
T 3h1t_A 28 DTCRVYVTPKLKESGWEN 45 (590)
T ss_dssp HHHHHTHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 999997489999779998
No 124
>3hdt_A Putative kinase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=41.50 E-value=14 Score=15.11 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=18.7
Q ss_pred CEEEEECCC--CHHHHHHHHHHHH
Q ss_conf 839994589--8479999999999
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLL 46 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il 46 (429)
.||+|+|.- ||||.+..|+.-|
T Consensus 15 ~iItI~g~~GsGKsTia~~LA~~L 38 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 799857999899799999999994
No 125
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=41.25 E-value=6.4 Score=17.24 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=17.6
Q ss_pred CHHCCCCCC---CHHHHHHHHHHHCCCCC
Q ss_conf 000000278---52344566653113798
Q gi|254780821|r 152 LDHEKILGN---TVSAIAKDKSGIIKPGC 177 (429)
Q Consensus 152 ~DHle~LG~---tle~Ia~eKa~I~k~~~ 177 (429)
-|||.|+++ ++|+|..+|..-++.+.
T Consensus 51 aDnLg~F~d~~~~iEdil~~kGe~V~~~~ 79 (100)
T 2e2z_A 51 ADHLKIFHDHHVTVEQLMKANGEQVSQDV 79 (100)
T ss_dssp CCSSCSGGGSCCCHHHHHHHHCCCCSSSS
T ss_pred HHCCCEECCCCCCHHHHHHHHCCEEEECC
T ss_conf 11036026799799999997097777668
No 126
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens}
Probab=39.28 E-value=3.3 Score=19.04 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=18.7
Q ss_pred HHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHH
Q ss_conf 999987299588359839994589847999999
Q gi|254780821|r 10 GYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFS 42 (429)
Q Consensus 10 ~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i 42 (429)
+.=+..-|.+..++. +||-||+ ||+|+...|
T Consensus 11 ~~~~~~~~~~~~rI~-liG~tg~-GKStl~N~l 41 (247)
T 3lxw_A 11 RENLYFQGESTRRLI-LVGRTGA-GKSATGNSI 41 (247)
T ss_dssp ---------CEEEEE-EESSTTS-SHHHHHHHH
T ss_pred CCCCCCCCCCCCEEE-EECCCCC-CHHHHHHHH
T ss_conf 887653589987899-9999998-299999999
No 127
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=38.92 E-value=16 Score=14.86 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=16.9
Q ss_pred CEEEEE---CCCCHHHHHHHH-HHHHHHC---CCCEEEEECC
Q ss_conf 839994---589847999999-9999997---8935141378
Q gi|254780821|r 25 PVIHIG---GTNGKGSVASFS-QRLLETS---GLSVHVHTSP 59 (429)
Q Consensus 25 ~vI~Vt---GTnGKttt~~~i-~~il~~~---g~k~g~~tSP 59 (429)
++.-|+ || |||||...+ ..+++.. +.++.+ ++|
T Consensus 165 ~~~lI~GgpGT-GKTtti~~~i~~l~~~~~~~~~~Ill-~Ap 204 (608)
T 1w36_D 165 RISVISGGPGT-GKTTTVAKLLAALIQMADGERCRIRL-AAP 204 (608)
T ss_dssp SEEEEECCTTS-THHHHHHHHHHHHHHTCSSCCCCEEE-EBS
T ss_pred CEEEEEECCCC-HHHHHHHHHHHHHHHHHHCCCCEEEE-EEC
T ss_conf 90899938997-29999999999999974157984999-948
No 128
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=38.45 E-value=16 Score=14.82 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=17.4
Q ss_pred CEEEEECCC--CHHHHHHHHHHHH
Q ss_conf 839994589--8479999999999
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLL 46 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il 46 (429)
.++++.|-| ||||+..++.-++
T Consensus 33 ei~~liGpNGaGKSTll~~i~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999984999999997797
No 129
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus halodurans c-125} SCOP: c.37.1.25
Probab=38.21 E-value=15 Score=14.94 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=17.8
Q ss_pred CCEEEEECC--CCHHHHHHHHHHHH
Q ss_conf 983999458--98479999999999
Q gi|254780821|r 24 PPVIHIGGT--NGKGSVASFSQRLL 46 (429)
Q Consensus 24 ~~vI~VtGT--nGKttt~~~i~~il 46 (429)
+++|-|+|. .||||.|..|+.-|
T Consensus 2 ~klIii~G~~GsGKTTla~~La~~l 26 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 9589998999989899999999980
No 130
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=37.98 E-value=11 Score=15.72 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=11.5
Q ss_pred EEEEECCCCHHHHHHHH
Q ss_conf 39994589847999999
Q gi|254780821|r 26 VIHIGGTNGKGSVASFS 42 (429)
Q Consensus 26 vI~VtGTnGKttt~~~i 42 (429)
+||-||+ ||+|...+|
T Consensus 27 l~G~tg~-GKSsl~N~l 42 (260)
T 2xtp_A 27 LVGKTGT-GKSAAGNSI 42 (260)
T ss_dssp EEECTTS-CHHHHHHHH
T ss_pred EECCCCC-CHHHHHHHH
T ss_conf 9918998-399999999
No 131
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=37.74 E-value=7.7 Score=16.76 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=10.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHH
Q ss_conf 3999458984799999999999
Q gi|254780821|r 26 VIHIGGTNGKGSVASFSQRLLE 47 (429)
Q Consensus 26 vI~VtGTnGKttt~~~i~~il~ 47 (429)
|||.||+ ||||+.. +++.
T Consensus 47 vvG~tGs-GKST~iN---sL~~ 64 (427)
T 2qag_B 47 CVGETGL-GKSTLMD---TLFN 64 (427)
T ss_dssp EECSTTS-SSHHHHH---HHHT
T ss_pred EECCCCC-CHHHHHH---HHHC
T ss_conf 9889999-7999999---9849
No 132
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleotide binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=36.69 E-value=17 Score=14.65 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.0
Q ss_pred CEEEEECC--CCHHHHHHHHHHHHH
Q ss_conf 83999458--984799999999999
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLLE 47 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il~ 47 (429)
++|.++|. -||||.+..|+..|.
T Consensus 4 ~iI~l~G~~GsGKsTvA~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 3999989999998999999999848
No 133
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=35.19 E-value=18 Score=14.50 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=22.6
Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCE
Q ss_conf 839994589--84799999999999978935
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSV 53 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~ 53 (429)
+.|.|.|-. ||||-+..|..-|...|.++
T Consensus 5 ~~I~ieG~dGsGKtT~~~~L~~~l~~~~~~~ 35 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKY 35 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 3899989988859999999999984689989
No 134
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=35.12 E-value=18 Score=14.49 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=25.6
Q ss_pred CEEEEECCC--CHHHHHHHHHHHHH-HCCCCE---------EEEECCCCCE
Q ss_conf 839994589--84799999999999-978935---------1413784110
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLE-TSGLSV---------HVHTSPHLIR 63 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~-~~g~k~---------g~~tSPhl~~ 63 (429)
|.|-|.|-+ ||||.|++|.+-+- ..|+++ |.|+-|.-++
T Consensus 139 PRVLV~Gp~~sGKSTl~r~L~Nyalr~~g~~p~~vDlDpGQ~~~s~PG~iS 189 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEE
T ss_conf 889998998879899999999999852697239996668987767996788
No 135
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=34.30 E-value=18 Score=14.41 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.4
Q ss_pred EEEEECC--CCHHHHHHHHHHHH
Q ss_conf 3999458--98479999999999
Q gi|254780821|r 26 VIHIGGT--NGKGSVASFSQRLL 46 (429)
Q Consensus 26 vI~VtGT--nGKttt~~~i~~il 46 (429)
+|+|-|+ .||||+|..|+.-|
T Consensus 5 ~IaIDGpagSGKsT~ak~LA~~l 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99977898678899999999992
No 136
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=33.91 E-value=19 Score=14.37 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=25.3
Q ss_pred HHHHHHHHHHCCCH-HHHCCCEEEEEC--CCCHHHHHHHHHHHHH
Q ss_conf 89999999872995-883598399945--8984799999999999
Q gi|254780821|r 6 LLKMGYLLEDLGRP-QDRLPPVIHIGG--TNGKGSVASFSQRLLE 47 (429)
Q Consensus 6 l~r~~~ll~~lg~P-~~~~~~vI~VtG--TnGKttt~~~i~~il~ 47 (429)
+.|+.-.|..+|.. +-.+ |-|.|.| +.||+|. |.+++.
T Consensus 8 ~~~l~d~l~~~g~~~~~~~-P~IvVvG~~s~GKSsl---iNallg 48 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDL-PQIAVVGGQSAGKSSV---LENFVG 48 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCC-CEEEEEEBTTSCHHHH---HHHHHT
T ss_pred HHHHHHHHHHCCCCCCCCC-CEEEEECCCCCCHHHH---HHHHHC
T ss_conf 9999999996477888888-8799987999979999---999968
No 137
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=33.34 E-value=19 Score=14.31 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=17.2
Q ss_pred CEEEEECC--CCHHHHHHHHHHHH
Q ss_conf 83999458--98479999999999
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLL 46 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il 46 (429)
+.|-++|. -||||.+..|+.-|
T Consensus 5 k~Iil~G~~GsGKtTi~k~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 849998689998999999999995
No 138
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=32.84 E-value=20 Score=14.26 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=23.1
Q ss_pred HHHHHHHCCCHHHHCCCEEEEECC--CCHHHHHHHHHHHH
Q ss_conf 999998729958835983999458--98479999999999
Q gi|254780821|r 9 MGYLLEDLGRPQDRLPPVIHIGGT--NGKGSVASFSQRLL 46 (429)
Q Consensus 9 ~~~ll~~lg~P~~~~~~vI~VtGT--nGKttt~~~i~~il 46 (429)
|+.+++.+ +|. ++|-|.|- .||||.|..|+.-+
T Consensus 2 ~~~~m~~~----~k~-kiI~l~G~pGSGKsT~a~~La~~~ 36 (199)
T 2bwj_A 2 MGGFMEDL----RKC-KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp --CHHHHH----HHS-CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHC----CCC-CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 34146565----478-689998999999899999999986
No 139
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, plasmid, helicase, hydrolase, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2w74_B*
Probab=32.43 E-value=18 Score=14.43 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=24.4
Q ss_pred HHHHCCCEEEEECCCCHHHHHHHHHHHHHHCC-CCEEEEE
Q ss_conf 58835983999458984799999999999978-9351413
Q gi|254780821|r 19 PQDRLPPVIHIGGTNGKGSVASFSQRLLETSG-LSVHVHT 57 (429)
Q Consensus 19 P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g-~k~g~~t 57 (429)
++++-. +.|-||| |||=|+.++...|...+ .+.-+|.
T Consensus 299 ~~~~Gl-i~haTGS-GKTlT~~~~a~~l~~~~~~~~VLfl 336 (1038)
T 2w00_A 299 PESGGY-IWHTTGS-GKTLTSFKAARLATELDFIDKVFFV 336 (1038)
T ss_dssp GGGSEE-EEECTTS-SHHHHHHHHHHHHTTCTTCCEEEEE
T ss_pred CCCCEE-EEECCCC-CCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 787269-9977898-2369999999999828778847999
No 140
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, calcium cation, chloride anion, zinc IONS, dipeptidase; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* 3d7g_A* 3d7h_A* ...
Probab=32.07 E-value=19 Score=14.31 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 8899999998729958835983999458984799999999999978935
Q gi|254780821|r 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSV 53 (429)
Q Consensus 5 ~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~ 53 (429)
+-.+|++.|+.|-. .-|+|||.|=-.++.++..-|+..|++.
T Consensus 23 ~~~~i~~~L~~lss-------~ph~aGT~g~~~aa~yi~~~f~~~Gl~~ 64 (707)
T 3fed_A 23 KAENIKSFLRSFTK-------LPHLAGTEQNFLLAKKIQTQWKKFGLDS 64 (707)
T ss_dssp CHHHHHHHHHHHSS-------SCCCTTSHHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHHHHHHHC-------CCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999856-------9867899889999999999999859985
No 141
>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} SCOP: a.80.1.1 c.37.1.20
Probab=31.50 E-value=21 Score=14.12 Aligned_cols=69 Identities=13% Similarity=0.103 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHCCCHHHHCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEEC
Q ss_conf 7888999999987299588359839994589--84799999999999978935141378411012008988847787155
Q gi|254780821|r 3 ADSLLKMGYLLEDLGRPQDRLPPVIHIGGTN--GKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLV 80 (429)
Q Consensus 3 ~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i 80 (429)
+|-|+-++++++.=-.| -+-+-|.. ||||+|.-+...+..... ..|-+. .|+. .++-|
T Consensus 3 ~~~~~~~~~~~~~~~~~------~~~~~g~~g~gk~~~~~~~~~~i~~~~~-----~HpD~~------~i~~---e~~~I 62 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGI------SILINGEDLSYPREVSLELPEYVEKFPP-----KASDVL------EIDP---EGENI 62 (305)
T ss_dssp -CHHHHHHHHHHTCSSE------EEEEECSSSSHHHHHHHHHHHHHHTSCC-----CTTTEE------EECC---SSSCB
T ss_pred HHHHHHHHHHHHCCCCC------EEEEECCCCCCHHHHHHHHHHHHHCCCC-----CCCCEE------EEEC---CCCCC
T ss_conf 78999999999769997------4988899998879999999999736567-----799889------8707---76789
Q ss_pred CHHHHHHHHHH
Q ss_conf 88999999999
Q gi|254780821|r 81 EDVELLDVFRR 91 (429)
Q Consensus 81 ~~~~~~~~~~~ 91 (429)
.=+++.++.+.
T Consensus 63 ~Id~IR~l~~~ 73 (305)
T 2gno_A 63 GIDDIRTIKDF 73 (305)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 98999999999
No 142
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=31.31 E-value=21 Score=14.10 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=17.4
Q ss_pred CEEEEECC-CCHHHHHHH-HHHHHHHCCCCEEEEECCC
Q ss_conf 83999458-984799999-9999999789351413784
Q gi|254780821|r 25 PVIHIGGT-NGKGSVASF-SQRLLETSGLSVHVHTSPH 60 (429)
Q Consensus 25 ~vI~VtGT-nGKttt~~~-i~~il~~~g~k~g~~tSPh 60 (429)
.||.++-| -|||-++.+ +..-| ..|.+ .+|++|-
T Consensus 201 dvlv~ApTGSGKTlv~~l~i~~~l-~~~~r-~l~l~Pt 236 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIAQSL-KNKQR-VIYTSPI 236 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHHHHH-HTTCE-EEEEESS
T ss_pred CEEEECCCCCHHHHHHHHHHHHHH-HHCCE-EEEECCH
T ss_conf 999980898659999999999999-61990-9998897
No 143
>3kgf_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathwa aromatic biosynthesis; HET: PHE TRP; 2.00A {Mycobacterium tuberculosis} PDB: 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 2w19_A 2w1a_A*
Probab=30.96 E-value=21 Score=14.07 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=21.5
Q ss_pred HHHHHHHHHCCC-CCCCEEEEECCCCCCC---HHHHHHHHHHHCCEE
Q ss_conf 888654331147-7771243113467989---899999888638889
Q gi|254780821|r 308 VVSKEISKLKGS-SNKPFYLVIGMVEGKK---YGRYLEAFVELSPIV 350 (429)
Q Consensus 308 ~l~~~l~~l~~~-~~~~i~~I~G~~~dKd---~~~~l~~l~~~~d~i 350 (429)
.+.+.++.+.+. ..+|+++|.=|..+|= ...+++.+......+
T Consensus 317 el~~L~~~LnP~nepGRltLI~RmGa~ki~~~LP~Li~aV~~~G~~V 363 (464)
T 3kgf_A 317 LAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQV 363 (464)
T ss_dssp HHHHHHHHHCTTCCTTSEEEEECCCTTTHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999998498887871899860370789988799999998779955
No 144
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=30.44 E-value=21 Score=14.01 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=26.0
Q ss_pred CCCHHHHCCCE--EEEECC--CCHHHHHHHHHHHHHHCC
Q ss_conf 29958835983--999458--984799999999999978
Q gi|254780821|r 16 LGRPQDRLPPV--IHIGGT--NGKGSVASFSQRLLETSG 50 (429)
Q Consensus 16 lg~P~~~~~~v--I~VtGT--nGKttt~~~i~~il~~~g 50 (429)
-+.|..+++.+ |.|-|- -||||++.++++.+...+
T Consensus 39 ~~r~~~~~p~ilRI~IEG~iGsGKTTl~k~La~~l~~~~ 77 (376)
T 1of1_A 39 EVRPEQKMPTLLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp -------CCEEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 455555677626999989876789999999998606487
No 145
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Aquifex aeolicus VF5}
Probab=28.99 E-value=23 Score=13.86 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=18.4
Q ss_pred CEEEEECC--CCHHHHHHHHHHHHHHCCCCE
Q ss_conf 83999458--984799999999999978935
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLLETSGLSV 53 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il~~~g~k~ 53 (429)
+.|+|||. .||||.+.++ +..|+.|
T Consensus 2 ~kIgItG~iGSGKSTv~~~l----~~~G~~v 28 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMF----RELGAYV 28 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHH----HHTTCEE
T ss_pred EEEEEECCCCCCHHHHHHHH----HHCCCEE
T ss_conf 49999799977799999999----9879939
No 146
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=28.36 E-value=23 Score=13.79 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHCCC-CCCCEEEE------ECCHHHHHHHHHHCCCC
Q ss_conf 9989999999986035-88679999------49779999999987974
Q gi|254780821|r 387 SSMIEALSRVRKINEE-LPPPLILI------AGSLYLAGEALRENGVR 427 (429)
Q Consensus 387 ~~~~eAi~~a~~~~~~-~~~d~VLV------~GS~ylvge~l~~~g~~ 427 (429)
.++++|++.|.+.+++ -.++.+|| |||-.++ ++|+.+|.+
T Consensus 355 ~tpeeAl~~aq~~~~~~~~~~~~~~f~~v~K~g~~t~~-~~~~~~~~~ 401 (658)
T 3f5f_A 355 QTVDAALAAAQTNAAADEEDDVVIIYNRVPKTASTSFT-NIAYDLCAK 401 (658)
T ss_dssp SCHHHHHHHHHHHTTSCCCSCCEEEECCCSSSSHHHHH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHH-HHHHHHHHH
T ss_conf 98999999999999841152732200588670899999-999999861
No 147
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A*
Probab=28.11 E-value=23 Score=13.77 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCCHHHHCCCEEEEEC--CCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 9999999872995883598399945--8984799999999999978935
Q gi|254780821|r 7 LKMGYLLEDLGRPQDRLPPVIHIGG--TNGKGSVASFSQRLLETSGLSV 53 (429)
Q Consensus 7 ~r~~~ll~~lg~P~~~~~~vI~VtG--TnGKttt~~~i~~il~~~g~k~ 53 (429)
.|+...+..||.+..--.|.|+|.| +.||+| +|.++| |.++
T Consensus 9 ~~~~d~~~~l~~~~~~~~p~I~VvG~~ssGKST---lINaLl---G~~i 51 (341)
T 2x2e_A 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSS---VLENFV---GRDF 51 (341)
T ss_dssp HHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHH---HHHTTT---TSCC
T ss_pred HHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHH---HHHHHH---CCCC
T ss_conf 999999997278888888869998489997999---999995---8996
No 148
>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl}
Probab=27.93 E-value=24 Score=13.75 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=17.8
Q ss_pred CEEEEECCC--CHHHHHHHHHHHH
Q ss_conf 839994589--8479999999999
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLL 46 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il 46 (429)
.+|.|+|.. ||||.+..|+.-+
T Consensus 6 ~~I~i~G~~GsGKTTla~~La~~~ 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998689999799999999996
No 149
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=27.56 E-value=17 Score=14.58 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=10.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 39994589847999999999999
Q gi|254780821|r 26 VIHIGGTNGKGSVASFSQRLLET 48 (429)
Q Consensus 26 vI~VtGTnGKttt~~~i~~il~~ 48 (429)
|+|.||+ ||||+ |.+|+..
T Consensus 36 v~G~tG~-GKSt~---iNsl~~~ 54 (418)
T 2qag_C 36 VVGESGL-GKSTL---INSLFLT 54 (418)
T ss_dssp EECCTTS-SHHHH---HHHHTTC
T ss_pred EECCCCC-CHHHH---HHHHHCC
T ss_conf 9778999-39999---9999688
No 150
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6- bisphosphatase; transferase (phospho), hydrolase (phospho), glycolysis, bifunctional enzyme; HET: ATG; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=26.99 E-value=25 Score=13.64 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=26.5
Q ss_pred EEEEECC--CCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3999458--9847999999999999789351413
Q gi|254780821|r 26 VIHIGGT--NGKGSVASFSQRLLETSGLSVHVHT 57 (429)
Q Consensus 26 vI~VtGT--nGKttt~~~i~~il~~~g~k~g~~t 57 (429)
||-..|= -||||.|.-|..-|...|++|-.|.
T Consensus 41 vivmvGLPa~GKS~ia~~l~r~L~~~g~~~~vf~ 74 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 9999899999999999999999712787628834
No 151
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=26.61 E-value=25 Score=13.60 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=20.9
Q ss_pred CEEEEECC--CCHHHHHHHHHHHHHHCCC
Q ss_conf 83999458--9847999999999999789
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLLETSGL 51 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il~~~g~ 51 (429)
+.|.|.|- .||||.+.+|+.-|+..|.
T Consensus 6 ~fIviEGidGsGKST~~~~L~~~L~~~~~ 34 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 28999899888499999999999971988
No 152
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=26.57 E-value=25 Score=13.59 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=25.9
Q ss_pred CEEEEECC--CCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 83999458--98479999999999997893514
Q gi|254780821|r 25 PVIHIGGT--NGKGSVASFSQRLLETSGLSVHV 55 (429)
Q Consensus 25 ~vI~VtGT--nGKttt~~~i~~il~~~g~k~g~ 55 (429)
.||=+||- .||||.+..|+..|...|+.|..
T Consensus 53 ~vIwltGlsGSGKSTIak~La~~L~~~~~~t~~ 85 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYT 85 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf 799998999999999999999996412789702
No 153
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=25.11 E-value=8.1 Score=16.62 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=12.2
Q ss_pred CEEEEECCCC--HHHHHHHH
Q ss_conf 8399945898--47999999
Q gi|254780821|r 25 PVIHIGGTNG--KGSVASFS 42 (429)
Q Consensus 25 ~vI~VtGTnG--Kttt~~~i 42 (429)
..|+|.|-|| |||-..++
T Consensus 47 e~vaIvG~sGsGKSTLl~ll 66 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLL 66 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHH
T ss_conf 89999999998799999999
No 154
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=24.80 E-value=27 Score=13.39 Aligned_cols=11 Identities=27% Similarity=0.446 Sum_probs=4.5
Q ss_pred CCCCCCCCCCC
Q ss_conf 05665235763
Q gi|254780821|r 200 MGCPYNVYGDD 210 (429)
Q Consensus 200 ~~~~~~~~~~~ 210 (429)
.+|..+.+|.|
T Consensus 257 ~GcthfiVGRD 267 (546)
T 2gks_A 257 YGATHFIVGRD 267 (546)
T ss_dssp TTCSEEEECTT
T ss_pred CCCCEEEECCC
T ss_conf 69855640565
No 155
>1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A
Probab=24.23 E-value=28 Score=13.33 Aligned_cols=45 Identities=18% Similarity=0.379 Sum_probs=32.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHC
Q ss_conf 3999458984799999999999978935141378411012008988847787155889999999998630
Q gi|254780821|r 26 VIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRV 95 (429)
Q Consensus 26 vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~ 95 (429)
+|.|||+++++- .--|||-+.|+ + ..|+.++.+++.++.+.+-.+
T Consensus 26 miNvtGvd~~g~-----------------~il~P~Y~ei~----L----~~G~tltkeeil~~Vq~~ida 70 (136)
T 1c76_A 26 MVNVTGVDGKGN-----------------ELLSPHYVEFP----I----KPGTTLTKEKIEYYVEWALDA 70 (136)
T ss_dssp EEEEEEECTTCC-----------------EEECCCCEEEE----C----CTTCEECHHHHHHHHHHHHTT
T ss_pred EEEEEEECCCCC-----------------EEECCCCEEEE----C----CCCCEECHHHHHHHHHHHHHH
T ss_conf 999750048998-----------------89545207886----4----768462699999999986433
No 156
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Probab=24.20 E-value=28 Score=13.32 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=22.2
Q ss_pred EEEEECCC--CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 39994589--84799999999999978935141
Q gi|254780821|r 26 VIHIGGTN--GKGSVASFSQRLLETSGLSVHVH 56 (429)
Q Consensus 26 vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~ 56 (429)
-|.|.|-. ||||.+..|..-|. .|+++-.+
T Consensus 4 fI~ieG~dGsGKsT~~~~L~~~L~-~~~~v~~~ 35 (205)
T 2ccj_A 4 FITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEE
T ss_conf 899989988709999999999996-69988998
No 157
>1b77_A GP45, protein (sliding clamp); replisome; 2.10A {Enterobacteria phage RB69} SCOP: d.131.1.2 d.131.1.2 PDB: 1b8h_A* 1czd_A*
Probab=24.06 E-value=24 Score=13.67 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=5.1
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 8899998621056
Q gi|254780821|r 190 REILVSKAEKMGC 202 (429)
Q Consensus 190 ~~~i~~~a~~~~~ 202 (429)
.+.+++.+.-.+.
T Consensus 123 l~~i~kAa~vl~l 135 (228)
T 1b77_A 123 LQQLLRVSRGLQI 135 (228)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999975199
No 158
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=23.60 E-value=28 Score=13.25 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=27.0
Q ss_pred CCHHHHCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 995883598399945-8984799999999999978935
Q gi|254780821|r 17 GRPQDRLPPVIHIGG-TNGKGSVASFSQRLLETSGLSV 53 (429)
Q Consensus 17 g~P~~~~~~vI~VtG-TnGKttt~~~i~~il~~~g~k~ 53 (429)
|.-.+++ +.|+|.| |+-+++..+++-.-|...||++
T Consensus 8 ~~~~~~~-KsIAVVGaS~~~~k~g~~v~~~l~~~g~~V 44 (138)
T 1y81_A 8 GSNSKEF-RKIALVGASKNPAKYGNIILKDLLSKGFEV 44 (138)
T ss_dssp ------C-CEEEEETCCSCTTSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCC-CEEEEECCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 8986104-779999216999982999999999789989
No 159
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=21.79 E-value=31 Score=13.03 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=17.9
Q ss_pred CEEEEECCC--CHHHHHHHHHHHH
Q ss_conf 839994589--8479999999999
Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLL 46 (429)
Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il 46 (429)
.+|-++|.. ||||.+..|+.-|
T Consensus 9 ~i~~l~G~~GsGKST~a~~La~~l 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 189998799999899999999996
No 160
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=21.73 E-value=31 Score=13.02 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=22.8
Q ss_pred CEEEEEC-CCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 8399945-89847999999999999789351
Q gi|254780821|r 25 PVIHIGG-TNGKGSVASFSQRLLETSGLSVH 54 (429)
Q Consensus 25 ~vI~VtG-TnGKttt~~~i~~il~~~g~k~g 54 (429)
+-|+|.| |.-+++.++.+..-|+..||++-
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~ 44 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVL 44 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 9699981069999839999999997899338
No 161
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=21.64 E-value=31 Score=13.01 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=16.0
Q ss_pred EEEECCC--CHHHHHHHHHHHHH
Q ss_conf 9994589--84799999999999
Q gi|254780821|r 27 IHIGGTN--GKGSVASFSQRLLE 47 (429)
Q Consensus 27 I~VtGTn--GKttt~~~i~~il~ 47 (429)
|.++|.| ||||....++..+.
T Consensus 3 i~i~G~~GsGKTTLlk~ia~~l~ 25 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999709999999997418
No 162
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=21.40 E-value=31 Score=12.98 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=25.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHC--CCCEEE
Q ss_conf 8399945898479999999999997--893514
Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETS--GLSVHV 55 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~--g~k~g~ 55 (429)
-.|+|==-+|||.|++-+...++++ |+||..
T Consensus 29 Glv~VytG~GKGKTTAAlGlalRA~G~G~rV~i 61 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGV 61 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 869999179987799999999998469987999
No 163
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=20.32 E-value=33 Score=12.84 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=17.5
Q ss_pred EEEEECC--CCHHHHHHHHHHHH
Q ss_conf 3999458--98479999999999
Q gi|254780821|r 26 VIHIGGT--NGKGSVASFSQRLL 46 (429)
Q Consensus 26 vI~VtGT--nGKttt~~~i~~il 46 (429)
.|+|.|. .||||.|.+|+.-|
T Consensus 2 ~I~IeG~~GsGKST~~k~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998889878999999999984
Done!