RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780821|ref|YP_003065234.1| FolC bifunctional protein
[Candidatus Liberibacter asiaticus str. psy62]
(429 letters)
>gnl|CDD|30633 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].
Length = 427
Score = 343 bits (880), Expect = 7e-95
Identities = 159/426 (37%), Positives = 228/426 (53%), Gaps = 34/426 (7%)
Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64
L ++ LLE LG PQ + PPVIH+ GTNGKGS +F + +L +G V V+TSPHL+ +
Sbjct: 26 GLERISRLLERLGNPQ-KSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSF 84
Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQN---LTIFELSIATALVLFSKYPAD 121
NER R+ G + D EL F RV + + LT FE+ A A + F++ D
Sbjct: 85 NERIRIN-----GEPISDEELAAAFERVEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVD 139
Query: 122 CAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVI 181
AI+EVGLGG LDATN+IE VSVITSI LDH LG+T+ +IA++K+GIIK G P VI
Sbjct: 140 VAILEVGLGGRLDATNVIEPD-VSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVI 198
Query: 182 GHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQD--KISQTNLTVLGLVGE 239
G Q E ++ +AE++G P V G DF E+ +Q + L +LG G
Sbjct: 199 GEQQPPEALNVIAERAEELGAPLFVLGPDFQVLEEGNGFSFQGGGGLLDLPLPLLG--GH 256
Query: 240 HQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDG 299
HQ NAA AI A++ G + +E I L +V W GRL++++E PL + +DG
Sbjct: 257 HQIENAALAIAALEALGKEISEEAIRKGLANVDWPGRLERLSENPL---------ILLDG 307
Query: 300 GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRG 359
HNP+A +++ + L + LV GM++ K L A + + + + L
Sbjct: 308 AHNPHAARALAETLKTLFNDRPRL-TLVFGMLKDKDIAGMLAALLPIVDEIYTTPL---P 363
Query: 360 RERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGE 419
R ++ + L+ A + G + EAL + +E L+L+ GSLYLAGE
Sbjct: 364 WPR---ALDAEELLAFAGERGGV--ELDDVAEALELALEKADE--DDLVLVTGSLYLAGE 416
Query: 420 ALRENG 425
L
Sbjct: 417 VLELLK 422
>gnl|CDD|37736 KOG2525, KOG2525, KOG2525, Folylpolyglutamate synthase [Coenzyme
transport and metabolism].
Length = 496
Score = 191 bits (486), Expect = 3e-49
Identities = 131/458 (28%), Positives = 193/458 (42%), Gaps = 74/458 (16%)
Query: 3 ADSLLKMGYLLEDLGRP--QDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPH 60
+L +M LLE LG P Q+ L +IH+ GT GKGS +F++ +L GL +TSPH
Sbjct: 50 GLTLPRMRKLLERLGNPEDQNSLN-IIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPH 108
Query: 61 LIRWNERFRLGVKGGRGRLVEDVELLDVFRRV------RRVKSAQNLTIFELSIATALVL 114
L+ ER R+ G+ + + + F V ++K T FE A +
Sbjct: 109 LLSVRERIRIN-----GQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHV 163
Query: 115 FSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK 174
F K D A+IEVGLGG LDATN+IEK V ITS+ LDH LGNT+S IA +K+GI K
Sbjct: 164 FVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFK 223
Query: 175 PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVL 234
G P Q E +L +A ++G P V A+E + L
Sbjct: 224 EGVPAFTVPQP-PEALNVLKERASELGVPLFVV-PPLEAYELSG-------------VNL 268
Query: 235 GLVGEHQYINAATAI------------------CAVQMAGFTLEKECINAALQSVQWFGR 276
GL+G HQ+ NA+ A+ A+Q +G L S W GR
Sbjct: 269 GLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIPPAFLS--GLASTDWPGR 326
Query: 277 LQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISK-LKGSSNKPFYLVIGMVEGKK 335
LQ + G + +DG H + +K K ++G +++ +
Sbjct: 327 LQILEYGRGV-------TWLLDGAHTKESAEACAKWFRKAVRGLKKLTSLILLFNCTSDR 379
Query: 336 YGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSR 395
L P++ ++I G S+ P + +S E L+
Sbjct: 380 ------DPPLLLPLLKPDAVI--GTRFSSVVFMPNITSSSPVGSADSISLNTSTEEQLNW 431
Query: 396 VRKI---------NEELPPPLILIAGSLYLAGEALREN 424
+ +E ++ GSLYLA E LR++
Sbjct: 432 QNDLQSVWEELKESEGKTEDPSIVFGSLYLAYELLRDD 469
>gnl|CDD|31113 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell
envelope biogenesis, outer membrane].
Length = 451
Score = 51.1 bits (122), Expect = 5e-07
Identities = 71/354 (20%), Positives = 121/354 (34%), Gaps = 74/354 (20%)
Query: 4 DSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIR 63
D+L +G L + Q VI I G+NGK + +L T G VH +P
Sbjct: 85 DTLEALGKLAKAY--RQKFNAKVIAITGSNGKTTTKEMLAAILSTKG---KVHATPG--- 136
Query: 64 WNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCA 123
N +G+ LT+ L T + A
Sbjct: 137 -NFNNEIGLP---------------------------LTLLRLPADT----------EYA 158
Query: 124 IIEVG--LGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK--PGCPV 179
++E+G G + + I + ++VIT+I H + G + IA+ K+ I+ +
Sbjct: 159 VLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG-SREGIAEAKAEILAGLRPEGI 217
Query: 180 VIGHQVYDEVREILVSKAE-------KMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLT 232
I + + + + +K + + + + E+ + +
Sbjct: 218 AILNA-DNPLLKNWAAKIGNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAEFE 276
Query: 233 VLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDH 292
L L G H NA A G LE+ I A L+ + K +G L L +
Sbjct: 277 -LPLPGRHNVTNALAAAALALELGLDLEE--IAAGLKEL-------KPVKGRLEVILLAN 326
Query: 293 SEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIG-MVEGKKYGRYLEAFVE 345
+ ID +N N + + L + V+G M+E G E E
Sbjct: 327 GKTLIDDSYNANPD-SMRAALDLLAALPGRKGIAVLGDMLE---LGEESEELHE 376
>gnl|CDD|31112 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell
envelope biogenesis, outer membrane].
Length = 475
Score = 49.6 bits (118), Expect = 2e-06
Identities = 85/417 (20%), Positives = 140/417 (33%), Gaps = 74/417 (17%)
Query: 17 GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGR 76
G P +L VI + GTNGK + S ++L+ G + G
Sbjct: 85 GLPSGKLK-VIGVTGTNGKTTTTSLLAQILKKLGKKT-----------------ALIGTE 126
Query: 77 GRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDAT 136
G + ++ T L + L A+ A++EV G +
Sbjct: 127 GDELSP----------GILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVSSHGLVQGR 176
Query: 137 NIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVY---DEVREIL 193
V V T++S DH T+ K+ + + G V D
Sbjct: 177 VEGVTFDVGVFTNLSRDHLD-YHGTMEYYGAAKAVLFESLPH--SGEAVINPDDGHGLDY 233
Query: 194 VSKAEKMGCPYNVYGDDF-YAFEKNKCLVYQDKISQTNLTV--------LGLVGEHQYIN 244
+ + Y YG DF + + S L L G N
Sbjct: 234 KERLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIGEYELPLPGLFNVYN 293
Query: 245 AATAICAVQMAGFTLEKECINAALQSVQW-FGRLQKITEGPLLNKLPDHSEVWIDGGHNP 303
A A+ A G LE I A L++++ GR++ + G L V +D HNP
Sbjct: 294 ALAAVAAALALGVDLED--ILAGLETLKPVPGRMELVNIGGKL--------VIVDYAHNP 343
Query: 304 NAGLVVSKEISKLKGSSNKPFYLVIGMV-EGKKYGRYLEAFV--ELSPIVLSVSLICRGR 360
+ + K + ++ + +V G + K R + +L+ IV+ S R
Sbjct: 344 DG---LEKALRAVRLHAAGRLIVVFGCGGDRDKSKRPDMGAIAEQLADIVIVTSDNPRSE 400
Query: 361 ERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEEL----PPPLILIAGS 413
+ P V++ + G +A +IE R I + L ++LIAG
Sbjct: 401 D-------PAVILADILA-GIEAPEKYEIIE--DREEAIRKALDLAKEGDVVLIAGK 447
>gnl|CDD|31114 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell
envelope biogenesis, outer membrane].
Length = 448
Score = 37.2 bits (86), Expect = 0.010
Identities = 69/385 (17%), Positives = 124/385 (32%), Gaps = 93/385 (24%)
Query: 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDV 83
P++ I GTNGK + S LL+ +G + G G
Sbjct: 110 APIVAITGTNGKTTTTSLIAHLLKAAG-----------------LDALLGGNIG-----T 147
Query: 84 ELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVA 143
L++ ++ + ELS S P
Sbjct: 148 PALELLE----QAEPADVYVLELSSFQLETTSSLRPE----------------------- 180
Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCP 203
++VI +IS DH G+ + A K I++ V + + ++ + +
Sbjct: 181 IAVILNISEDHLDRHGS-MENYAAAKLRILEGQTEVAVINADDAYLKTLADEATKA---- 235
Query: 204 YNVYGDDFYAFEKNKCLVYQDKISQTNLTV-----LGLVGEHQYINAATAICAVQMAGFT 258
V F + +Y K+ + L L G H NA A+ + G
Sbjct: 236 -RVIWFSFGEPLADGDYIYDGKLVFKGEKLLPADELKLPGAHNLENALAALALARALGVP 294
Query: 259 LEKECINAALQSVQWF----GRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEIS 314
E A L+++ F RL+ + E ++I+ N ++ +S
Sbjct: 295 PE-----AILEALSSFTGLPHRLEFVGEK--------DGVLFINDSKATNVDATLAA-LS 340
Query: 315 KLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQ 374
G P L+ G G G E+ V+ L+ G + + I+
Sbjct: 341 GFDG----PVILIAG---GDDKGADFSPLAEILAKVI-KKLVLIGEDAEKIA-------A 385
Query: 375 EAKKLGFQAMACSSMIEALSRVRKI 399
K+ G + C ++ EA+ R++
Sbjct: 386 ALKEAGPSLVICETLEEAVQLAREL 410
>gnl|CDD|147498 pfam05343, Peptidase_M42, M42 glutamyl aminopeptidase. These
peptidases are found in Archaea and Bacteria. The
example in Lactococcus lactis, PepA, aids growth on
milk. Pyrococcus horikoshii contain a thermostable
de-blocking aminopeptidase member of this family used
commercially for N-terminal protein sequencing.
Length = 292
Score = 36.8 bits (86), Expect = 0.011
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 19/89 (21%)
Query: 126 EVGLGGSLDATNIIE-KVAVSVITSISLD------HEKILGNTVSAIAKDKSGIIKPGCP 178
EVGL G+ + I+ A++V + + D ++ LG KD SGI P
Sbjct: 167 EVGLRGAKTSAFKIKPDEAIAVDVTPAGDTPGSDEYKAPLGKGPVIRVKDASGIYHPK-- 224
Query: 179 VVIGHQVYDEVREILVSKAEKMGCPYNVY 207
+R+ L+ A+K PY V
Sbjct: 225 ----------LRKFLLELAKKNNIPYQVE 243
>gnl|CDD|31554 COG1363, FrvX, Cellulase M and related proteins [Carbohydrate
transport and metabolism].
Length = 355
Score = 36.7 bits (85), Expect = 0.013
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 19/89 (21%)
Query: 126 EVGLGGSLDATNII-EKVAVSVITSISLDHEKI------LGNTVSAIAKDKSGIIKPGCP 178
EVGL G+ + I +A++V + + D + LG KD SGI P
Sbjct: 213 EVGLRGAKTSAFRIKPDIAIAVDVTPAGDTPGVPKGDVKLGKGPVIRVKDASGIYHPK-- 270
Query: 179 VVIGHQVYDEVREILVSKAEKMGCPYNVY 207
+R+ L+ AEK PY V
Sbjct: 271 ----------LRKFLLELAEKNNIPYQVD 289
>gnl|CDD|32227 COG2044, COG2044, Predicted peroxiredoxins [General function
prediction only].
Length = 120
Score = 28.3 bits (63), Expect = 4.5
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 372 LMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEALRENGV 426
L+++A + G + C E ++R I E+ + I G+ A + V
Sbjct: 67 LIKQAIEAGVKIYVC----EQSLKLRGIKEDDLVEGVKIVGAATFLLLASEADVV 117
>gnl|CDD|31708 COG1519, KdtA, 3-deoxy-D-manno-octulosonic-acid transferase [Cell
envelope biogenesis, outer membrane].
Length = 419
Score = 27.5 bits (61), Expect = 7.7
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 43 QRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLD 87
LE + V P+ +++ ++ G G VED +LL
Sbjct: 333 HNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLA 377
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.137 0.395
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,065,559
Number of extensions: 267320
Number of successful extensions: 673
Number of sequences better than 10.0: 1
Number of HSP's gapped: 661
Number of HSP's successfully gapped: 17
Length of query: 429
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 332
Effective length of database: 4,167,664
Effective search space: 1383664448
Effective search space used: 1383664448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)