RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] (429 letters) >gnl|CDD|162392 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog. Length = 397 Score = 305 bits (783), Expect = 1e-83 Identities = 151/424 (35%), Positives = 215/424 (50%), Gaps = 34/424 (8%) Query: 6 LLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWN 65 L +M LLE LG PQD L PVIH+ GTNGKGS +F + +L +G V + TSPHL+ +N Sbjct: 1 LERMKKLLEALGNPQD-LYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFN 59 Query: 66 ERFRLGVKGGRGRLVEDVELLDVFRRVR-RVKS-AQNLTIFELSIATALVLFSKYPADCA 123 ER R+ G + D EL F +VR ++ +Q T FEL A + F++ D A Sbjct: 60 ERIRIN-----GEPISDEELAQAFEQVRPILEKLSQQPTYFELLTLLAFLYFAQAQVDVA 114 Query: 124 IIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGH 183 ++EVGLGG LDATN+IE + VSVITSI LDH +ILG+T+ IA +K+GIIK G P+V G Sbjct: 115 VLEVGLGGRLDATNVIEPL-VSVITSIGLDHTEILGDTLEEIAWEKAGIIKEGVPIVTGP 173 Query: 184 QVYDEVREILVSKAEKMGCPYNVYGDDF-YAFEKNKCLVYQDKISQTNLTVLGLVGEHQY 242 Q E +L KA++ G P V G DF Y+ L + L L+G+HQ Sbjct: 174 QE-PEALNVLKKKAQEKGAPLFVVGRDFNYSETDENYLSFSGANLFLEPLALSLLGDHQA 232 Query: 243 INAATAICAV---QMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDG 299 NAA A+ A+ L +E I L + W GRL+ ++E D+ + +DG Sbjct: 233 ENAALALAALEVLGKQRPKLSEEAIRKGLANTIWPGRLEILSE--------DNPNILLDG 284 Query: 300 GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRG 359 HNP++ +++ K + +P L+ G + K L + + V+ Sbjct: 285 AHNPHSAEALAEWFKKRF--NGRPIILLFGALADKDAAAMLAPLKPVVDKEVFVTPFDYP 342 Query: 360 RERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGE 419 R + L A+ G + EAL+ + E IL+ GSLYL GE Sbjct: 343 R-----ADDAADLAALAETFGKE--TVEDWREALALALNASAE---DDILVTGSLYLVGE 392 Query: 420 ALRE 423 + Sbjct: 393 VRKL 396 >gnl|CDD|178501 PLN02913, PLN02913, dihydrofolate synthetase. Length = 510 Score = 182 bits (464), Expect = 1e-46 Identities = 131/460 (28%), Positives = 203/460 (44%), Gaps = 56/460 (12%) Query: 6 LLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWN 65 L +M L++ LG P + +H+ GT GKGS A+F +L G SV +TSPHL Sbjct: 58 LGRMRRLMDRLGNPHSKFK-AVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIR 116 Query: 66 ERFRLGVKGGRGRLVEDVELLDVFRRVR----RVKSAQN--LTIFELSIATALVLFSKYP 119 ER +G G V L D+F ++ +N LT FE+ A A LF++ Sbjct: 117 ERISVGKLGKP---VSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQEN 173 Query: 120 ADCAIIEVGLGGSLDATNII--EKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGC 177 D A+IE GLGG+ DATN+I +A SVIT+I +H LG ++ +IA KSGIIK G Sbjct: 174 VDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGR 233 Query: 178 PVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKN-----KCLVYQD----KISQ 228 PVV+G + IL KA M P A + K ++ + + Sbjct: 234 PVVLGGPFLPHIESILRDKASSMNSPV------VSASDPGVRSSIKGIITDNGKPCQSCD 287 Query: 229 TNLTV--------------LGLVGEHQYINAATAICA---VQMAGFTLEKECINAALQSV 271 + V L ++G HQ NA TA CA ++ G+ + I A L++ Sbjct: 288 IVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLRDQGWRISDASIRAGLENT 347 Query: 272 QWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV 331 GR Q +T + V +DG H + + I LV+ M Sbjct: 348 NLLGRSQFLTSKEAEVLGLPGATVLLDGAHTKESAKALVDTIKTAFPE--ARLALVVAMA 405 Query: 332 EGKKYGRYLEAFV---ELSPIVLSVSLICRGRERQ-SISITPKVLMQEAKKLGFQAMACS 387 K + + F+ + + L+ + I G+ R S S + ++ A +LG + + Sbjct: 406 SDKDHLAFASEFLSGLKPEAVFLTEADIAGGKSRSTSASALKEAWIKAAPELGIETLLAE 465 Query: 388 ------SMIEALSRVRKINEELPPPLILIAGSLYLAGEAL 421 S+++A + +RK P ++ + GSL++ L Sbjct: 466 NNSLLKSLVDASAILRKARTLDPSSVVCVTGSLHIVSAVL 505 >gnl|CDD|178469 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase. Length = 530 Score = 167 bits (426), Expect = 4e-42 Identities = 103/300 (34%), Positives = 142/300 (47%), Gaps = 45/300 (15%) Query: 26 VIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVEL 85 VIH+ GT GKGS +F++ +L G + TSPHLI ERFRL G + + + Sbjct: 63 VIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLD-----GVDISEEKF 117 Query: 86 LDVF---RRVRRVKSAQNL---TIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNII 139 L F + K+ ++L F A +FS D AI+EVGLGG LDATN++ Sbjct: 118 LRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVV 177 Query: 140 EKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEK 199 +K V ITS+ DH +ILG+T+ IA +K+GI KPG P Q DE +L +A + Sbjct: 178 QKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVPQP-DEAMRVLEERASE 236 Query: 200 MGCPYNVYGD-DFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAI----CAVQM 254 +G P V D Y K LGL GEHQY+NA A+ +Q Sbjct: 237 LGVPLQVVEPLDSYGLSGLK---------------LGLAGEHQYLNAGLAVALCSTWLQR 281 Query: 255 AGFTLEKECINAA----------LQSVQWFGRLQKITEGPLLNKLPDHSEVW-IDGGHNP 303 G E E + A L + GR Q + + +N V+ +DG H+P Sbjct: 282 TG-HEEFEALLQAGTLPEQFIKGLSTASLQGRAQVVPD-SYINSEDSGDLVFYLDGAHSP 339 >gnl|CDD|182774 PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional. Length = 416 Score = 147 bits (374), Expect = 4e-36 Identities = 100/332 (30%), Positives = 159/332 (47%), Gaps = 31/332 (9%) Query: 9 MGYLLEDLGRPQDRL------PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLI 62 +G LE + + RL P V + GTNGKG+ + +L +G V V++SPHL+ Sbjct: 30 LG--LERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLV 87 Query: 63 RWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADC 122 R+ ER R+ +G+ + + F + + +LT FE +AL LF + D Sbjct: 88 RYTERVRI-----QGQELPESAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQAQLDV 142 Query: 123 AIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIG 182 I+EVGLGG LDATNI++ V+V+TSI+LDH LG +I ++K+GI + P V+G Sbjct: 143 VILEVGLGGRLDATNIVD-ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAVVG 201 Query: 183 HQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQY 242 ++ + A++ G G D+ + + D L L L Sbjct: 202 EP---DMPSTIADVAQEKGALLQRRGVDWNYSVTDHDWAFSDG--DGTLENLPLPNVPL- 255 Query: 243 INAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHN 302 NAATA+ A++ +G + ++ I + S GR Q ++E P + +D HN Sbjct: 256 PNAATALAALRASGLEVSEQAIRDGIASAILPGRFQIVSESPRV---------ILDVAHN 306 Query: 303 PNAGLVVSKEISKLKGSSNKPFYLVIGMVEGK 334 P+A ++ + L N VIGM+ K Sbjct: 307 PHAAEYLTGRLKAL--PKNGRVLAVIGMLHDK 336 >gnl|CDD|162224 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ. Length = 417 Score = 41.1 bits (97), Expect = 5e-04 Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 29/181 (16%) Query: 121 DCAIIEVGLG--GSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCP 178 D A++E+G G + I K ++VIT+I H + G ++ IA+ K I++ Sbjct: 127 DYAVLEMGASHPGEIAYLAEIAKPDIAVITNIGPAHLEGFG-SLEGIAEAKGEILQGLKE 185 Query: 179 ---VVIG--HQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTV 233 VI + + + L +KA + G DF A + + T T+ Sbjct: 186 NGIAVINADDPAFAKFAKRLPNKAILS---FGFEGGDFSAA-----DISYSALGSTGFTL 237 Query: 234 ----------LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQW-FGRLQKITE 282 L L+G H +NA A G LE+ I L ++ GR + T+ Sbjct: 238 VAPGGEFEVSLPLLGRHNVMNALAAAALALELGIPLEE--IAEGLAELKLVKGRFEIQTK 295 Query: 283 G 283 Sbjct: 296 N 296 >gnl|CDD|183385 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional. Length = 958 Score = 40.1 bits (94), Expect = 0.001 Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 32/228 (14%) Query: 123 AIIEVGLG--GSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII----KPG 176 A+ E+G+ G + I V+++T+ +H++ + + V A+A+ K II + G Sbjct: 661 AVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMHS-VEAVARAKGEIIAALPEDG 719 Query: 177 CPVVIGHQVYDEVREILVSKAEKMGCPY----NVYGDDF------YAFEKNKCLVYQDKI 226 VV G Y + L + +VY + +C V Sbjct: 720 VAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQVVTPA- 778 Query: 227 SQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWF-GRLQKITEGPL 285 + L L+GEH NA AI AG +L++ A L+ Q GR+Q+ Sbjct: 779 GSAEVY-LPLIGEHNLRNALAAIACALAAGASLKQIR--AGLERFQPVAGRMQRRRL--- 832 Query: 286 LNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIG-MVE 332 ID +N N + I L N P LV+G M+E Sbjct: 833 -----SCGTRIIDDTYNANP-DSMRAAIDVLAELPNGPRALVLGDMLE 874 Score = 32.8 bits (75), Expect = 0.17 Identities = 62/306 (20%), Positives = 102/306 (33%), Gaps = 61/306 (19%) Query: 17 GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGR 76 GRP ++L ++ + GTNGK S A +LL G G G Sbjct: 106 GRPSEQLS-LVAVTGTNGKTSCAQLLAQLLTRLGKPC-----------------GSIGTL 147 Query: 77 GRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEV---GLG-GS 132 G ++ + T + + L AD +E GL G Sbjct: 148 GARLDGRLI-----------PGSLTTPDAIILHRILARMRAAGADAVAMEASSHGLEQGR 196 Query: 133 LDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGI---IKPGCPVVI------GH 183 LD ++AV+ T+++ DH G T+ + K+ + + VI Sbjct: 197 LDGL----RIAVAGFTNLTRDHLDYHG-TMQDYEEAKAALFSKLPGLGAAVINADDPAAA 251 Query: 184 QVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKC---LVYQDKISQTNLTVLGLVGEH 240 ++ + L +V D A + L D Q V L+G Sbjct: 252 RLLAALPRGLKVGYSPQNAGADVQARDLRA-TAHGQVFTLATPDGSYQ---LVTRLLGRF 307 Query: 241 QYINAATAICAVQMAGFTLEKECIN-AALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDG 299 N A++ G L + AA+ V GR++++ + P V +D Sbjct: 308 NVSNLLLVAAALKKLGLPLAQIARALAAVSPVP--GRMERVGPTA-GAQGPL---VVVDY 361 Query: 300 GHNPNA 305 H P+A Sbjct: 362 AHTPDA 367 >gnl|CDD|149357 pfam08245, Mur_ligase_M, Mur ligase middle domain. Length = 188 Score = 38.4 bits (90), Expect = 0.003 Identities = 49/237 (20%), Positives = 74/237 (31%), Gaps = 62/237 (26%) Query: 29 IGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDV 88 I GTNGK + LL +G Sbjct: 1 ITGTNGKTTTTELIAALLSAAG-------------------------------------- 22 Query: 89 FRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDA-TNIIEKVAVSVI 147 V + N T + + L L + AD A++E+ G + + K ++VI Sbjct: 23 ----GVVGTGGN-TNNAIGLPLLLALMERKGADYAVLELSSFGLGEGRLEGLAKPDIAVI 77 Query: 148 TSISLDHEKILGNTVSAIAKDKSGI---IKPGCPVVIGHQVYDEVREILVSKAEKMGCPY 204 T+IS DH G T+ A K+ I + VI D+ L + + G Sbjct: 78 TNISPDHLDYHG-TMENYAAAKAEIFEGLPEDGIAVINA---DD--PELAKRLKNAGAKV 131 Query: 205 NVYG-DDFYAFEKNKCLVYQDKISQTNLTV--------LGLVGEHQYINAATAICAV 252 +G ++ V + TV L L G H NA A+ A Sbjct: 132 ITFGLENEADDRAANIYVSSEGGKIVLFTVPGGELEISLPLPGRHNVYNALAALAAA 188 >gnl|CDD|179359 PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional. Length = 498 Score = 34.6 bits (80), Expect = 0.049 Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHV 55 P V+ I GTNGK + + + L E +G V V Sbjct: 121 PKVLAITGTNGKTTTTALTGLLCERAGKKVAV 152 >gnl|CDD|162197 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase. Length = 433 Score = 33.9 bits (78), Expect = 0.089 Identities = 13/30 (43%), Positives = 17/30 (56%) Query: 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSV 53 PV+ I GTNGK + S LL+ +GL Sbjct: 102 LPVVAITGTNGKTTTTSLLYHLLKAAGLKA 131 >gnl|CDD|162196 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown. Length = 464 Score = 32.7 bits (75), Expect = 0.20 Identities = 62/307 (20%), Positives = 97/307 (31%), Gaps = 59/307 (19%) Query: 17 GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGR 76 G P +L VI + GTNGK + S +LL G + G+ G Sbjct: 79 GHPSKKLK-VIGVTGTNGKTTTTSLIAQLLRLLGK-----------------KTGLIGTI 120 Query: 77 G-RLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEV---GLG-G 131 G RL + + + A T L++ + L + A A++EV L G Sbjct: 121 GYRLGGNDLIKNP---------AALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHALAQG 171 Query: 132 SLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVRE 191 + +V T++S DH G T+ K+ + D+ Sbjct: 172 RVRGVR----FDAAVFTNLSRDHLDFHG-TMENYFAAKASLFTELGLKRFAVINLDDEYG 226 Query: 192 ILVSKAEKMGCPY---NVYGDDFYAFEKNKCLVYQDKISQTNLTVLG--------LVGEH 240 K D K Y + Q L+G Sbjct: 227 AQFVKRLPKDITVSAITQPADGRAQDIKITDSGYSFEGQQFTFETPAGEGHLHTPLIGRF 286 Query: 241 QYINAATAICAV-QMAGFTLEKECINAALQSVQWF-GRLQKITEGPLLNKLPDHSEVWID 298 N A+ + + G LE I AAL+ + GR++ + G V +D Sbjct: 287 NVYNLLAALATLLHLGGIDLED--IVAALEKFRGVPGRMELVDGGQKFL-------VIVD 337 Query: 299 GGHNPNA 305 H P+A Sbjct: 338 YAHTPDA 344 >gnl|CDD|178894 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional. Length = 460 Score = 32.0 bits (74), Expect = 0.27 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 17 GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSG 50 G P D+L +I + GTNGK + A ++L G Sbjct: 89 GHPSDKLK-LIGVTGTNGKTTTAYLLAQILRLLG 121 Score = 28.9 bits (66), Expect = 2.5 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 10/73 (13%) Query: 234 LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWF-GRLQKITEGPLLNKLPDH 292 L+G N A+ A+ G LE AAL +Q GR++++ G Sbjct: 272 SPLIGRFNVSNLLAALAALLALGVPLED--ALAALAKLQGVPGRMERVDAG-------QG 322 Query: 293 SEVWIDGGHNPNA 305 V +D H P+A Sbjct: 323 PLVIVDYAHTPDA 335 >gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. Length = 864 Score = 31.7 bits (72), Expect = 0.38 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 33/150 (22%) Query: 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVE 84 P++ + GTNGK + +L+ +G V + T+ G + Sbjct: 480 PIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTT-----------------DGVYIGK-- 520 Query: 85 LLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAV 144 V+ N A+A + D A++E GG L ++ V Sbjct: 521 --------YLVEKGDN-----TGPASARRILMDPTVDAAVLETARGGILREGLAFDRCDV 567 Query: 145 SVITSISLDHEKILG-NTVSAIAKDKSGII 173 V+T+I+ DH I NT+ +A K ++ Sbjct: 568 GVVTNIAGDHLGIGDINTIEDLADVKRVVV 597 >gnl|CDD|184501 PRK14093, PRK14093, UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional. Length = 479 Score = 29.7 bits (67), Expect = 1.4 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 19/157 (12%) Query: 116 SKYPADC--AIIEVGLGGSLDATNIIEKVA--VSVITSISLDHEKILGNTVSAIAKDKSG 171 ++ PAD A+ E+G+ + + +++ V V++IT++ H + + AIA K+ Sbjct: 154 ARCPADARFAVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFSG-IEAIADAKAE 212 Query: 172 I---IKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNV-YGDDFYAFEKNKCLVYQDKIS 227 I ++PG V+ R L + A G V +G D A + + S Sbjct: 213 IFTGLEPGGAAVLNRDNPQFDR--LAASARAAGIARIVSFGADEKADARLLDVALHADCS 270 Query: 228 QTNLTV--------LGLVGEHQYINAATAICAVQMAG 256 + + LG+ G H +N+ + A ++AG Sbjct: 271 AVHADILGHDVTYKLGMPGRHIAMNSLAVLAAAELAG 307 >gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional. Length = 438 Score = 29.4 bits (66), Expect = 1.9 Identities = 12/31 (38%), Positives = 19/31 (61%) Query: 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHV 55 PVI I G+NGK +V + + + +G+ V V Sbjct: 109 PVIAITGSNGKSTVTDLTGVMAKAAGVKVAV 139 Score = 29.0 bits (65), Expect = 2.4 Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 24/132 (18%) Query: 234 LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFG-RLQKITEGPLLNKLPDH 292 L LVG H N + + AG K AL+S R Q + + +H Sbjct: 263 LKLVGRHNVANVLVVLALLDAAGVDYRKAL--DALKSYTGLTHRCQVVAD--------NH 312 Query: 293 SEVWIDGGHNPNAGLVVSKEISKLKG-SSNKPFYLVIGMVEGKKYGRYLEAFVELSPIV- 350 W++ N V+ ++ L G YL++G V GK F L P++ Sbjct: 313 GIKWVNDSKATN----VASTLAALSGLEIEGKLYLLVGGV-GKG-----ADFSPLKPVLA 362 Query: 351 -LSVSLICRGRE 361 L++ L C G + Sbjct: 363 TLNLQLCCFGED 374 >gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional. Length = 727 Score = 29.0 bits (66), Expect = 2.3 Identities = 10/29 (34%), Positives = 16/29 (55%) Query: 25 PVIHIGGTNGKGSVASFSQRLLETSGLSV 53 P++ + GTNGK + +L+ SG V Sbjct: 481 PIVAVTGTNGKTTTTRLIAHILKLSGKRV 509 >gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional. Length = 438 Score = 28.8 bits (65), Expect = 2.8 Identities = 10/31 (32%), Positives = 18/31 (58%) Query: 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHV 55 P++ I G+NGK +V + + + +G V V Sbjct: 106 PIVAITGSNGKSTVTTLVGEMAKAAGWKVGV 136 >gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional. Length = 445 Score = 28.3 bits (63), Expect = 3.6 Identities = 12/27 (44%), Positives = 14/27 (51%) Query: 25 PVIHIGGTNGKGSVASFSQRLLETSGL 51 VI I G+NGK +V S L GL Sbjct: 111 KVIAITGSNGKTTVTSLVGYLCIKCGL 137 >gnl|CDD|183298 PRK11752, PRK11752, putative S-transferase; Provisional. Length = 264 Score = 28.0 bits (63), Expect = 4.6 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 4/29 (13%) Query: 55 VHTSPHLIRWNERF--RLGVKGGRGRLVE 81 V + H+ RW + R VK RGR+V Sbjct: 233 VGSYKHVQRWAKEIAERPAVK--RGRIVN 259 >gnl|CDD|130808 TIGR01747, diampropi_NH3ly, diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase). Length = 376 Score = 27.9 bits (62), Expect = 4.6 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 9/53 (16%) Query: 369 PKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEAL 421 P +MQ G+ +A EA+ ++R++ P ++L AG +AG L Sbjct: 181 PTWIMQ-----GYATLA----DEAVEQLREMGSVTPTHVLLQAGVGSMAGGVL 224 >gnl|CDD|179428 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional. Length = 447 Score = 27.5 bits (62), Expect = 6.0 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 9/53 (16%) Query: 234 LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFG----RLQKITE 282 + L G H NA AI A ++ G + E I L + F RLQ + Sbjct: 269 IVLPGSHNLENALAAIAAAKLLG--VSNEAIREVLST---FSGVKHRLQYVGT 316 Score = 27.1 bits (61), Expect = 9.0 Identities = 9/31 (29%), Positives = 16/31 (51%) Query: 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHV 55 P+I I G+NGK + + +L+ G + Sbjct: 109 PIIGITGSNGKTTTTTLIGEMLKAGGQHALL 139 >gnl|CDD|179650 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional. Length = 448 Score = 27.6 bits (62), Expect = 6.2 Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHV 55 PVI I G+NGK +V + + + +G V V Sbjct: 108 APVIAITGSNGKSTVTTLVGEMAKAAGKRVAV 139 >gnl|CDD|132195 TIGR03151, enACPred_II, putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. Length = 307 Score = 27.8 bits (62), Expect = 6.3 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 27/87 (31%) Query: 297 IDGGHNPNAGLVVSKEISKLKGSSNKPF----YLVIGMVE-------------------- 332 I G+ P VV KEI K+K ++KPF L+ V+ Sbjct: 40 IGAGNAPPD--VVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGN 97 Query: 333 -GKKYGRYLEAFVELSPIVLSVSLICR 358 GK R E V++ P+V SV+L R Sbjct: 98 PGKYIPRLKENGVKVIPVVASVALAKR 124 >gnl|CDD|180006 PRK05306, infB, translation initiation factor IF-2; Validated. Length = 787 Score = 27.2 bits (61), Expect = 9.4 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 365 ISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPP 406 + ++ K L+++ K+LG + + SS +E RK+ + L Sbjct: 13 LGVSSKELLEKLKELGIEVKSHSSTVEE-EEARKLLDHLKKS 53 >gnl|CDD|184459 PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional. Length = 481 Score = 26.9 bits (60), Expect = 9.9 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%) Query: 3 ADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSG 50 A SL+ M E PQ +L ++ GT GK + A F+ +L+ Sbjct: 94 AMSLIAM----EFYDNPQHKLK-LLAFTGTKGKTTAAYFAYHILKQLH 136 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.137 0.395 Gapped Lambda K H 0.267 0.0666 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,001,530 Number of extensions: 454533 Number of successful extensions: 941 Number of sequences better than 10.0: 1 Number of HSP's gapped: 926 Number of HSP's successfully gapped: 43 Length of query: 429 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 333 Effective length of database: 3,920,105 Effective search space: 1305394965 Effective search space used: 1305394965 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.6 bits)