RPSBLAST alignment of GI: 254780821 and protein with PDBid: 1j6u

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 17/284 (5%)

Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCP 203
             +IT+   DH +  GN+++        I +     ++     DE+   L      +   
Sbjct: 184 YLIITNARGDHLENYGNSLTRYRSAFEKISRNTD--LVVTFAEDELTSHLGDVTFGVKKG 241

Query: 204 YNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKEC 263
                    +  + K +V ++      L  L + G H  +NA   I      G+ L    
Sbjct: 242 TYTLEMRSASRAEQKAMVEKNGKRYLELK-LKVPGFHNVLNALAVIALFDSLGYDLAPVL 300

Query: 264 INAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKP 323
                       R       P       +  V  D  H P+    + +   ++    N+ 
Sbjct: 301 EALEEFRGVH-RRFSIAFHDP-----ETNIYVIDDYAHTPDEIRNLLQTAKEVFE--NEK 352

Query: 324 FYLVIGMVEGKKYGRYLEAFVE---LSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG 380
             ++       +  R    F +   L+  V+   +     E+++  I+ K++    K LG
Sbjct: 353 IVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVYDAFEEKKNG-ISGKMIWDSLKSLG 411

Query: 381 FQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEALREN 424
            +A     + E    +      +   L + AG +  +     E 
Sbjct: 412 KEAYFVEKLPELEKVISVSENTV--FLFVGAGDIIYSSRRFVER 453