RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780821|ref|YP_003065234.1| FolC bifunctional protein
[Candidatus Liberibacter asiaticus str. psy62]
         (429 letters)



>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex,
           ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei}
           SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A
           2gc5_A* 2gc6_A* 2gcb_A
          Length = 428

 Score =  215 bits (547), Expect = 2e-56
 Identities = 128/434 (29%), Positives = 210/434 (48%), Gaps = 49/434 (11%)

Query: 5   SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64
              ++  LL  LG PQ +    IH+ GTNGKGS A+    +LE SGL+V ++TSP ++R+
Sbjct: 21  DHRRILTLLHALGNPQQQGR-YIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRF 79

Query: 65  NERFRLGVKGGRGRLVEDVELLDV-------FRRVRRVKSAQNLTIFELSIATALVLFSK 117
           NER  +         + D  L++          R+++ ++  N+T FE   A A   F +
Sbjct: 80  NERIMID-----HEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQ 134

Query: 118 YPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGC 177
              D A+IEVG+GG  D+TN+I  V VSV+T ++LDH+K+LG+T++AIAK K+GIIK G 
Sbjct: 135 RQVDVAVIEVGIGGDTDSTNVITPV-VSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGI 193

Query: 178 PVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFY-----AFEKNKCLVYQDKISQTNLT 232
           PVV G+    +   ++ +K    G  +  +  DF           +   Y+D+  + +  
Sbjct: 194 PVVTGNL-VPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDL 252

Query: 233 VLGLVGEHQYINAATAICAVQMAGFTLEKEC----INAALQSVQWFGRLQKITEGPLLNK 288
            + LVG++Q  N A AI   ++     E       I   L +  W  RL+KI++ PL   
Sbjct: 253 EVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASHWPARLEKISDTPL--- 309

Query: 289 LPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSP 348
                 + IDG HNP+    +   + +L    ++P  ++ G++  K Y    +    L+ 
Sbjct: 310 ------IVIDGAHNPDGINGLITALKQLF---SQPITVIAGILADKDYAAMAD---RLTA 357

Query: 349 IVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLI 408
              +V L+      +++        +   +   +     S  EAL        ++P   I
Sbjct: 358 AFSTVYLVPVPGTPRALP-------EAGYEALHEGRLKDSWQEAL---AASLNDVPDQPI 407

Query: 409 LIAGSLYLAGEALR 422
           +I GSLYLA    +
Sbjct: 408 VITGSLYLASAVRQ 421


>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166,
           structural genomics, JCSG, PSI, protein structure
           initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2
           c.72.2.2
          Length = 442

 Score =  212 bits (540), Expect = 1e-55
 Identities = 115/423 (27%), Positives = 183/423 (43%), Gaps = 32/423 (7%)

Query: 5   SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64
            L ++  LL  LG P       IHIGGTNGKGSVA+    +L + G  V  + SPHL  +
Sbjct: 34  GLERISMLLSKLGNPHLEYK-TIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTF 92

Query: 65  NERFRL-GVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCA 123
            ER RL         +V+  E ++        +   + + FE+  A A + F++   D A
Sbjct: 93  RERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIA 152

Query: 124 IIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGH 183
           ++EVGLGG LDATN++  +    I ++  DHEK LG T+  IA +KSGIIK   P+V G 
Sbjct: 153 VLEVGLGGRLDATNVVFPLCS-TIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGE 211

Query: 184 QVYDEVREILVSKAEKMGCPYNVYGDDFYA----FEKNKCLVYQDKISQTNLTVLGLVGE 239
           +   E  +++   A K      V   DF       + ++        +     VL + G 
Sbjct: 212 R-KREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGP 270

Query: 240 HQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDG 299
           HQ  NA  A+  ++  G  L ++ I   L++ +  GR + +          +     +DG
Sbjct: 271 HQIENAGVALKTLEATGLPLSEKAIREGLKNAKNLGRFEILE--------KNGKMYILDG 322

Query: 300 GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRG 359
            HNP+    + + +      + +P  LVIG+++ K     L    + + I   V +    
Sbjct: 323 AHNPHGAESLVRSLKLYF--NGEPLSLVIGILDDKNREDILR---KYTGIFERVIVTRVP 377

Query: 360 RERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGE 419
             R         L+  AKK           +EA+    +          ++ GSL+L G 
Sbjct: 378 SPR---MKDMNSLVDMAKKFFKNVEVIEDPLEAIESTERA--------TVVTGSLFLVGY 426

Query: 420 ALR 422
              
Sbjct: 427 VRE 429


>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics,
           center for structural genomics of infec diseases, csgid;
           HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
          Length = 437

 Score =  208 bits (531), Expect = 1e-54
 Identities = 108/432 (25%), Positives = 180/432 (41%), Gaps = 46/432 (10%)

Query: 5   SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64
            L ++  + E L   +     +  + GTNGKG+     + +L  +GL V V++SPHL+R+
Sbjct: 34  GLERVKQVAERLDLLKPAPK-IFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRY 92

Query: 65  NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124
            ER R+      G+ + + E    F ++   +   +LT FE    +AL LF +   D  I
Sbjct: 93  TERVRIQ-----GQELSEAEHSHSFAQIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVI 147

Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184
           +EVGLGG LDATNI++   V+ ITSI+LDH   LG    +I ++K+G+ + G P V+G  
Sbjct: 148 LEVGLGGRLDATNIVDSD-VAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGEP 206

Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYI- 243
              +        A ++G         +  F + +    Q+ + Q         GE Q   
Sbjct: 207 DMPQSIAD---VAAELGAQLYRRDVAWK-FSQQEPFDQQEPVDQQINGWHWQCGERQLTG 262

Query: 244 ---------NAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSE 294
                    NAATA+  +  +   L  E I   LQ+    GR Q ++E P          
Sbjct: 263 LPVPNVPLANAATALAVLHYSELPLSDEAIRQGLQAASLPGRFQVVSEQP---------L 313

Query: 295 VWIDGGHNPNAGLVVSKEISKLKGSSN----KPFYLVIGMVEGKKYGRYLEAFVELSPIV 350
           + +D  HNP+A   +   ++++    N         V+GM+  K     L     LS  V
Sbjct: 314 LILDVAHNPHAARYLVNRLAQVINPVNASKQGKVRAVVGMLSDKDIAGTLA---CLSERV 370

Query: 351 LSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI 410
                      R     +   L +        A   S +  A  +  +  +     ++++
Sbjct: 371 DEWYCAPLEGPR---GASAGQLAEHLVS----ARQFSDVETAWRQAMQDAD--TQDVVIV 421

Query: 411 AGSLYLAGEALR 422
            GS +     + 
Sbjct: 422 CGSFHTVAHVMA 433


>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, conformational
           change, peptidoglycan synthesis, cell division, cobalt
           binding; HET: ADP; 2.0A {Mycobacterium tuberculosis}
           PDB: 2vor_A*
          Length = 487

 Score =  161 bits (407), Expect = 3e-40
 Identities = 109/457 (23%), Positives = 176/457 (38%), Gaps = 55/457 (12%)

Query: 5   SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64
           SL ++  L++ LG PQ   P  IHI GTNGK SVA     L+          TSPHL   
Sbjct: 46  SLTRISALMDLLGSPQRSYP-SIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSP 104

Query: 65  NERFRLGVKGGRGRLVEDVELLDVFRRVRRV-------------KSAQNLTIFELSIATA 111
            ER  +      G+ +   + +  +R +  +             K    ++ FE+  A A
Sbjct: 105 VERISID-----GKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMA 159

Query: 112 LVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSG 171
              F+  P D A++EVG+GG  DATN+I    V+VIT IS+DH   LG  ++ IA +K+G
Sbjct: 160 FAAFADAPVDVAVVEVGMGGRWDATNVINAP-VAVITPISIDHVDYLGADIAGIAGEKAG 218

Query: 172 IIKPGCPVVIG-----HQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCL-----V 221
           II               +   +V E+L++++ +          +F    +   +      
Sbjct: 219 IITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSEFAVLRRQIAVGGQVLQ 278

Query: 222 YQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKIT 281
            Q      +   L L GEHQ  NA  A+ +V+              L           +T
Sbjct: 279 LQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAF----FGAGAQRQLDGDAVRAGFAAVT 334

Query: 282 EGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLE 341
               L ++     V+ID  HNP          +       +    V+ ++  K     L 
Sbjct: 335 SPGRLERMRSAPTVFIDAAHNPAGASA--LAQTLAHEFDFRFLVGVLSVLGDKDVDGILA 392

Query: 342 AFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGF--QAMACSSMIEALSRVRKI 399
           A   L P+  SV +   G  R   ++  + L   A +     +     ++ +A+     +
Sbjct: 393 A---LEPVFDSVVVTHNGSPR---ALDVEALALAAGERFGPDRVRTAENLRDAIDVATSL 446

Query: 400 NEEL-----------PPPLILIAGSLYLAGEALRENG 425
            ++                I+I GS+  AG A    G
Sbjct: 447 VDDAAADPDVAGDAFSRTGIVITGSVVTAGAARTLFG 483


>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase,
           ATP-binding, folate biosynthesis, ligase,
           multifunctional enzyme; HET: KCX PD8 ADP; 1.82A
           {Escherichia coli} PDB: 1w7k_A*
          Length = 422

 Score =  139 bits (350), Expect = 1e-33
 Identities = 102/418 (24%), Positives = 168/418 (40%), Gaps = 36/418 (8%)

Query: 5   SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64
            L ++  +   LG  +   P V  + GTNGKG+     + +L  +G  V V++SPHL+R+
Sbjct: 31  GLERVSLVAARLGVLKPA-PFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRY 89

Query: 65  NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124
            ER R+  +      + +      F  +   +   +LT FE    +AL LF +   D  I
Sbjct: 90  TERVRVQGQE-----LPESAHTASFAEIESARGDISLTYFEYGTLSALWLFKQAQLDVVI 144

Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184
           +EVGLGG LDATNI++   V+V+TSI+LDH   LG    +I ++K+GI +   P ++G  
Sbjct: 145 LEVGLGGRLDATNIVDAD-VAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVGEP 203

Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYIN 244
                   +  +   +     V  +                +    L            N
Sbjct: 204 EMPSTIADVAQEKGALLQRRGVEWNYSVTDHDWAFSDAHGTLENLPLP------LVPQPN 257

Query: 245 AATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304
           AATA+ A++ +G  + +  I   + S    GR Q ++E P          V  D  HNP+
Sbjct: 258 AATALAALRASGLEVSENAIRDGIASAILPGRFQIVSESPR---------VIFDVAHNPH 308

Query: 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQS 364
           A   ++  +  L    N     VIGM+  K     L     L  +V           R  
Sbjct: 309 AAEYLTGRMKALP--KNGRVLAVIGMLHDKDIAGTLA---WLKSVVDDWYCAPLEGPR-- 361

Query: 365 ISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEALR 422
              T + L++          +  S+ +A        +      +L+ GS +     + 
Sbjct: 362 -GATAEQLLEHLGN----GKSFDSVAQAWDAAMADAK--AEDTVLVCGSFHTVAHVME 412


>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate
           ligase; peptidoglycan biosynthesis; HET: KCX UAG API;
           2.0A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
          Length = 498

 Score =  123 bits (310), Expect = 6e-29
 Identities = 64/425 (15%), Positives = 122/425 (28%), Gaps = 62/425 (14%)

Query: 3   ADSLLKMGYLLEDL-GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHL 61
           +    ++  L       P D L  ++ + GTNGK +      +  +  G    V  +   
Sbjct: 87  SQLNERLSALAGRFYHEPSDNLR-LVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGN 145

Query: 62  IRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPAD 121
               +                                +N T   + +   L       A 
Sbjct: 146 GLLGKVI----------------------------PTENTTGSAVDVQHELAGLVDQGAT 177

Query: 122 CAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVI 181
              +EV   G +       K A SV T++S DH    G  +      K  +         
Sbjct: 178 FCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHG-DMEHYEAAKWLLYSEHHCGQA 236

Query: 182 GHQVYDEVREILVSKAEKM-------GCPYNVYGDDFYA----FEKNKCLVYQDKISQTN 230
                DEV    ++K               N +G    A    +  +   +         
Sbjct: 237 IINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDG 296

Query: 231 LTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLP 290
                L+G     N   A+  +   G+ L  + +  A +     GR++  T        P
Sbjct: 297 EIESHLMGAFNVSNLLLALATLLALGYPLA-DLLKTAARLQPVCGRMEVFTA-------P 348

Query: 291 DHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIV 350
               V +D  H P+A   + K +   +       + V G   G +          ++   
Sbjct: 349 GKPTVVVDYAHTPDA---LEKALQAARLHCAGKLWCVFGCG-GDRDKGKRPLMGAIAEEF 404

Query: 351 LSVSLICRGRERQSISITPKVLMQEAKKLGF---QAMACSSMIEALSRVRKINEELPPPL 407
             V+++     R   +  P+ ++ +          A       EA++      +     +
Sbjct: 405 ADVAVVTDDNPR---TEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAK--ENDV 459

Query: 408 ILIAG 412
           +L+AG
Sbjct: 460 VLVAG 464


>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate
           ligase; nucleotide-binding, peptidoglycan synthesis,
           MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium
           tuberculosis}
          Length = 535

 Score = 88.5 bits (218), Expect = 3e-18
 Identities = 63/410 (15%), Positives = 123/410 (30%), Gaps = 61/410 (14%)

Query: 17  GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGR 76
           G P +RL  VI I GT+GK +     +  L  +G    +  +  +               
Sbjct: 140 GHPSERLT-VIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSA----- 193

Query: 77  GRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDAT 136
                                    T    ++   L    +   D  ++EV         
Sbjct: 194 -----------------------LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR 230

Query: 137 NIIEKVAVSVITSISLDHEKILGNTVS---AIAKDKSGIIKPGCPVVIGHQVYDEVREIL 193
               + AV   T++S DH     +      A A              +     D  R + 
Sbjct: 231 VDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMA 290

Query: 194 VSKAEKMGCPYNVYGDDFYA------FEKNKCLVYQDKISQTNLTVLGLVGEHQYINAAT 247
              A+ +          + A          +     D     +   + L G +   N   
Sbjct: 291 ARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLV 350

Query: 248 AICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGL 307
           A+  +   G + E+      L+ ++  GRL++I                +D  H P A  
Sbjct: 351 ALAILDTVGVSPEQ--AVPGLREIRVPGRLEQIDR-------GQGFLALVDYAHKPEALR 401

Query: 308 VVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAF---VELSPIVLSVSLICRGRERQS 364
            V   ++      ++   +V G    +  G+         +L+ +V+      R  +  +
Sbjct: 402 SVLTTLA----HPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTA 457

Query: 365 ISITPKVLMQEAKKLGF--QAMACSSMIEALSRVRKINEELPPPLILIAG 412
           I    + ++  A ++G   Q +  +   +A+          P  ++LIAG
Sbjct: 458 IR---REILAGAAEVGGDAQVVEIADRRDAIRHAVAWAR--PGDVVLIAG 502


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 69.6 bits (170), Expect = 1e-12
 Identities = 81/480 (16%), Positives = 137/480 (28%), Gaps = 173/480 (36%)

Query: 40  SFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVED------VELLDVF---- 89
           + S   LE   L V   +     +  E+F   +         D       EL+  F    
Sbjct: 10  TLSHGSLEHV-LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68

Query: 90  -RRVRRVKSAQNLTIFELSIATALVLF-SKYPADCAIIEVGLGG--------SLDATNII 139
              V   K  Q   +  L +      F + Y          L G         L   N  
Sbjct: 69  SSLVEPSKVGQFDQVLNLCLTE----FENCY----------LEGNDIHALAAKLLQENDT 114

Query: 140 EKVAVSVI-----TSISLDHEKILGNTVSAI----AKDKSGIIKPGCPVVIGHQ----VY 186
             V    +     T+  +        + SA+     +  + ++      + G Q     Y
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV-----AIFGGQGNTDDY 169

Query: 187 -DEVREILVSKAEKMGCPYNVYG---DDFYAF--EKNKCLV----YQDKISQTNLTVLG- 235
            +E+R++           Y  Y     D   F  E    L+      +K+    L +L  
Sbjct: 170 FEELRDL-----------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218

Query: 236 LVGEHQ-----YINAATA------ICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGP 284
           L          Y+   +       I  +Q+A + +            +    L+  T G 
Sbjct: 219 LENPSNTPDKDYL--LSIPISCPLIGVIQLAHYVV--TAKLLGFTPGELRSYLKGAT-G- 272

Query: 285 LLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFV 344
                  HS+           GLV +  I+    + +                   E+F 
Sbjct: 273 -------HSQ-----------GLVTAVAIA---ETDS------------------WESFF 293

Query: 345 ELSPIVLSVSL-I-CRGRE---RQSISITPKVLMQEAKKLGFQAMACSSM--IEALSR-- 395
                 ++V   I  R  E     S+   P +L +++ +        S M  I  L++  
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLP--PSIL-EDSLENNEGVP--SPMLSISNLTQEQ 348

Query: 396 ----VRKINEELPP------PLI------LIAG---SLY-LAGEALRENGV-------RI 428
               V K N  LP        L+      +++G   SLY L    LR+          RI
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL-TLRKAKAPSGLDQSRI 407



 Score = 30.3 bits (68), Expect = 0.83
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 38/131 (29%)

Query: 1    MAADSLLKM----GYLLEDLGRPQDRLPPVIHIGGTN------GKGSVA-SFSQRLLE-- 47
            M+ +SL+++    G  ++ +  P+D L      G +N        G VA SFSQ  L+  
Sbjct: 1777 MSIESLVEVVFYRGMTMQ-VAVPRDEL------GRSNYGMIAINPGRVAASFSQEALQYV 1829

Query: 48   ------TSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNL 101
                   +G  V +      + +N   +  V  G      D+  LD    V      Q +
Sbjct: 1830 VERVGKRTGWLVEI------VNYNVENQQYVAAG------DLRALDTVTNVLNFIKLQKI 1877

Query: 102  TIFELSIATAL 112
             I EL  + +L
Sbjct: 1878 DIIELQKSLSL 1888



 Score = 28.0 bits (62), Expect = 3.7
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)

Query: 25   PV---IHIGGTNGKGSVASFSQRLLET 48
            PV   IH GG  GK    ++S  + ET
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFET 1695


>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
           MCSG, structural genomics, midwest center for structural
           genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
          Length = 451

 Score = 53.3 bits (127), Expect = 9e-08
 Identities = 42/301 (13%), Positives = 103/301 (34%), Gaps = 32/301 (10%)

Query: 114 LFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII 173
           + +    D  ++E  L           +  ++VIT++   H    G+    +A   +   
Sbjct: 155 VQAANDKDTLVME--LSSFQLMGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQN 212

Query: 174 KPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTV 233
           +      +       + + L    +    P++       A+ ++K L Y+ + +  ++  
Sbjct: 213 QMSSSDFLVLNFNQGISKELAKTTKATIVPFSTTEKVDGAYVQDKQLFYKGE-NIMSVDD 271

Query: 234 LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDH 292
           +G+ G H   NA   I   ++AG + +   I   L +      RLQ + +          
Sbjct: 272 IGVPGSHNVENALATIAVAKLAGISNQV--IRETLSNFGGVKHRLQSLGK---------V 320

Query: 293 SEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLS 352
             +           L   K +S       K   +  G+  G ++   +     L  +V+ 
Sbjct: 321 HGISFYNDSKSTNILATQKALSGFDN--TKVILIAGGLDRGNEFDELIPDITGLKHMVV- 377

Query: 353 VSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAG 412
                       +  +   + + A+K G        + +A+ +  ++ +     +IL++ 
Sbjct: 378 ------------LGESASRVKRAAQKAGVTYSDALDVRDAVHKAYEVAQ--QGDVILLSP 423

Query: 413 S 413
           +
Sbjct: 424 A 424


>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics,
           TM0231, JCSG, PSI, protein structure initiative; 2.30A
           {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
          Length = 469

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 17/284 (5%)

Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCP 203
             +IT+   DH +  GN+++        I +     ++     DE+   L      +   
Sbjct: 184 YLIITNARGDHLENYGNSLTRYRSAFEKISRNTD--LVVTFAEDELTSHLGDVTFGVKKG 241

Query: 204 YNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKEC 263
                    +  + K +V ++      L  L + G H  +NA   I      G+ L    
Sbjct: 242 TYTLEMRSASRAEQKAMVEKNGKRYLELK-LKVPGFHNVLNALAVIALFDSLGYDLAPVL 300

Query: 264 INAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKP 323
                       R       P       +  V  D  H P+    + +   ++    N+ 
Sbjct: 301 EALEEFRGVH-RRFSIAFHDP-----ETNIYVIDDYAHTPDEIRNLLQTAKEVFE--NEK 352

Query: 324 FYLVIGMVEGKKYGRYLEAFVE---LSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG 380
             ++       +  R    F +   L+  V+   +     E+++  I+ K++    K LG
Sbjct: 353 IVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVYDAFEEKKNG-ISGKMIWDSLKSLG 411

Query: 381 FQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEALREN 424
            +A     + E    +      +   L + AG +  +     E 
Sbjct: 412 KEAYFVEKLPELEKVISVSENTV--FLFVGAGDIIYSSRRFVER 453


>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA
           ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1
           c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
          Length = 475

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 50/283 (17%), Positives = 91/283 (32%), Gaps = 24/283 (8%)

Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCP 203
           VSV+T++  DH          +       +        G  V      +L+    K+G  
Sbjct: 188 VSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFY--GLAVMCADDPVLMELVPKVGRQ 245

Query: 204 YNVYGDDFYAFEKNKCLVYQDKISQTNLTVL---------GLVGEHQYINAATAICAVQM 254
              YG    A  + +            +             + G+H  +NA  A+   + 
Sbjct: 246 VITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKE 305

Query: 255 AGFTLEKECINAALQSVQW-FGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEI 313
            G   E   I  AL   Q    R  ++ E    N       +  D GH+P    V  K  
Sbjct: 306 EGIANEA--ILEALADFQGAGRRFDQLGEFIRPN---GKVRLVDDYGHHPTEVGVTIKAA 360

Query: 314 SKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSL--ICRGRERQSISITPKV 371
            +  G  +K   ++       +     + FV++   V ++ +  +    E   +    K 
Sbjct: 361 REGWG--DKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAPIVGADSKS 418

Query: 372 LMQEAKKLGF-QAMACSSMIEALSRVRKINEELPPPLILIAGS 413
           L +  + LG    +  S   +    + +I +     LIL  G+
Sbjct: 419 LCRSIRNLGKVDPILVSDTSQLGDVLDQIIQ--DGDLILAQGA 459


>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta
           sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
           c.72.2.1
          Length = 452

 Score = 43.8 bits (102), Expect = 7e-05
 Identities = 46/322 (14%), Positives = 100/322 (31%), Gaps = 41/322 (12%)

Query: 121 DCAIIEVGL--GGSLDATNIIEKVAVSVITSISLDHEKILGNTVS-AIAKDKSGIIKPGC 177
           D A+IE+G    G +  T  + +   +++ +++  H +  G+    A AK +     P  
Sbjct: 153 DYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN 212

Query: 178 PVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDF------YAFEKNKCLVYQDKISQTNL 231
            + I +   ++          +    ++    +            +         + +  
Sbjct: 213 GIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVD 272

Query: 232 TVLGLVGEHQYINAATAICAVQMAGFTLEK-ECINAALQSVQWFGRLQKITEGPLLNKLP 290
            +L L G H   NA  A       G TL+  +   A L++V       ++ E        
Sbjct: 273 VLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQ------ 326

Query: 291 DHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIV 350
               +  D  +     +  +  +  L         +V  M E           V++    
Sbjct: 327 ---LLLDDSYNANVGSMTAA--VQVLAEMPGYRVLVVGDMAEL--GAESEACHVQVGEAA 379

Query: 351 LSVS---LICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPL 407
            +     ++  G++                         +     ++R++ +  E     
Sbjct: 380 KAAGIDRVLSVGKQ-----------SHAISTASGVGEHFADKTALITRLKLLIAEQQVIT 428

Query: 408 ILIAGS----LYLAGEALRENG 425
           IL+ GS    +     AL+ENG
Sbjct: 429 ILVKGSRSAAMEEVVRALQENG 450


>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
           cycle, cell division, cell shape, cell WAL
           biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
           coli} PDB: 2wjp_A* 2jfg_A* 2jff_A* 2jfh_A* 2uuo_A*
           2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A*
           3uag_A* 2uag_A*
          Length = 439

 Score = 37.8 bits (87), Expect = 0.005
 Identities = 42/289 (14%), Positives = 81/289 (28%), Gaps = 36/289 (12%)

Query: 114 LFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII 173
           +      +  ++E  L      T    +   + I +++ DH       +      K  I 
Sbjct: 145 MLLDDECELYVLE--LSSFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIY 202

Query: 174 KPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTV 233
           +     V+     D +   +    E+        GD     ++ +  +        N+  
Sbjct: 203 ENAKVCVVNA--DDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKE 260

Query: 234 LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDH 292
           + L G+H Y NA  A+     AG          AL +      R + + E          
Sbjct: 261 MKLSGQHNYTNALAALALADAAGLPRAS--SLKALTTFTGLPHRFEVVLEH------NGV 312

Query: 293 SEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLS 352
             +      N  +          L G        ++   +GK           L+  +  
Sbjct: 313 RWINDSKATNVGSTEAA------LNGLHVDGTLHLLLGGDGKSADFS-----PLARYLNG 361

Query: 353 --VSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKI 399
             V L C GR+   +          A      A    +M +A+  +   
Sbjct: 362 DNVRLYCFGRDGAQL----------AALRPEVAEQTETMEQAMRLLAPR 400


>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase,
           bacterial cell WALL; 2.50A {Escherichia coli}
          Length = 491

 Score = 37.6 bits (86), Expect = 0.006
 Identities = 43/286 (15%), Positives = 89/286 (31%), Gaps = 25/286 (8%)

Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIK--PGCPVVIGHQVYDEVREILVSKAEK-- 199
           V+++T+I  DH          + +     +   P     +       +RE+L     +  
Sbjct: 189 VAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTT 248

Query: 200 ---MGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAG 256
                   +V  +D+             +  +     L   G H  +NAA A+      G
Sbjct: 249 TYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEG 308

Query: 257 FTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSE---VWIDGGHNPNAGLVVSKEI 313
                E I  AL+S Q  GR         L  +   S    +  D GH+P        + 
Sbjct: 309 IDD--EAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE-----VDA 361

Query: 314 SKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPI-----VLSVSLICRGRERQSISIT 368
           +     +  P   ++ + +  ++ R  + + + + +      L +  +    E       
Sbjct: 362 TIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGAD 421

Query: 369 PKVLMQEAKKLGF-QAMACSSMIEALSRVRKINEELPPPLILIAGS 413
            + L +  +  G    +           +  +       LIL+ G+
Sbjct: 422 SRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLT--GNDLILVQGA 465


>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural
           genomics, joint center for structural genomics, JCSG;
           HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
          Length = 524

 Score = 34.5 bits (78), Expect = 0.047
 Identities = 53/434 (12%), Positives = 110/434 (25%), Gaps = 76/434 (17%)

Query: 14  EDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVK 73
           + L     +   VI + GT+GK         +L  +G+                      
Sbjct: 112 QFLSEQVLQSRHVIAVAGTHGKXXXXXMLAWILHYAGIDAGFLI---------------- 155

Query: 74  GGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEV----GL 129
           GG   +                   Q                +       +IE       
Sbjct: 156 GGVPLVNTT-----------DTNLQQVFAHSSYLGTEKDDSDNSVNTGYFVIEADEYDSA 204

Query: 130 GGSLDATNIIEKVAVSVITSISLDH---EKILGNTVSAIAKDKSGIIKPGCPVVIGHQVY 186
                +  +  +   +++ ++  DH      L    +        I   G  ++    + 
Sbjct: 205 FFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAIQTQFHHMVRMIPSTGKIIMPAATIS 264

Query: 187 DE---------------VREILVSKAEKMGCPYNVYG----DDFYA----FEKNKCLVYQ 223
            E               V +  +S   +   P          D+ A     + ++  V  
Sbjct: 265 LEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFTVSF 324

Query: 224 DKISQTNLTV-LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITE 282
           +   +    V   + G H   NA  AI A    G +  K    A         R++ I +
Sbjct: 325 NDNKEATALVNWSMSGLHNVNNALVAIAAAYNIGVS-VKTACAALSAFAGIKRRMELIGD 383

Query: 283 GPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEA 342
                       V+ D  H+P A         K           +  ++E +     +  
Sbjct: 384 VN-------DILVFDDFAHHPTAITTTLDGAKKKLADRR-----LWAIIEPRSNTMKMGI 431

Query: 343 FVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGF---QAMACSSMIEALSRVRKI 399
             +      +++      E   +    K ++  A             SS+ + +  +   
Sbjct: 432 HQDSLAQSATLADHTLWYEPTGLEWGLKEVIDNATIANPSIGSQQVLSSVDDIIKHICTH 491

Query: 400 NEELPPPLILIAGS 413
            +      I+I  +
Sbjct: 492 AK--AGDAIVIMSN 503


>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           MESO-diaminopimelate ligase; structural genomics, PSI-2,
           protein structure initiative; 2.55A {Neisseria
           meningitidis MC58}
          Length = 326

 Score = 33.5 bits (75), Expect = 0.089
 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 6/130 (4%)

Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCP 203
            +V+ ++  DH  I  +  +   +    +       +I      +  +  + K       
Sbjct: 194 TAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDKGCWTPVE 253

Query: 204 YNVYGDDFYAFEKNKC---LVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLE 260
                  + A E N      V  D  +   +    L+G H  +NA   I A +  G  ++
Sbjct: 254 KFGTEHGWQAGEANADGSFDVLLDGKTAGRVK-WDLMGRHNRMNALAVIAAARHVGVDIQ 312

Query: 261 KECINAALQS 270
                 AL +
Sbjct: 313 T--ACEALGA 320


>3meb_A Aspartate aminotransferase; pyridoxal phosphate, structural
           genomics, seattle structural genomics center for
           infectious disease; HET: PLP; 1.90A {Giardia lamblia
           atcc 50803}
          Length = 448

 Score = 31.7 bits (71), Expect = 0.29
 Identities = 4/35 (11%), Positives = 8/35 (22%)

Query: 184 QVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNK 218
                +R +L +   K   P       +       
Sbjct: 355 ARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAI 389


>1wyz_A Putative S-adenosylmethionine-dependent methytransferase; northeast
           structural genomics consortium, BTR28; 2.50A
           {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.90.1.1
          Length = 242

 Score = 28.4 bits (62), Expect = 2.9
 Identities = 7/39 (17%), Positives = 15/39 (38%)

Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIG 182
           + +  +I+ + E I   TV         + K  C  ++ 
Sbjct: 195 LCIAANITCEGEFIQTRTVKDWKGHIPELSKIPCIFLLY 233


>3da0_A Cleaved chimeric receptor binding protein from bacteriophages
           TP901-1 and P2; lactococcal phage P2; 1.65A {Lactococcus
           phage tp901-1}
          Length = 136

 Score = 27.9 bits (62), Expect = 4.4
 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 16/98 (16%)

Query: 225 KISQTNLTVLGLVGEHQYINAATAICAVQM-AGFTLEKECINAALQSVQWFGRLQKITEG 283
           K    N+ V G       +        V+   G  L+    N  L  V++FG +  I +G
Sbjct: 16  KTFTGNVEVNG------SLTLPVQTLTVEAGNGLQLQLTKKNNDLVIVRFFGSVSNIQKG 69

Query: 284 PLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSN 321
             +      S  W+D    P     V   +    G   
Sbjct: 70  WNM------SGTWVDRPFRPA---AVQSLVGHFAGRDT 98


>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold,
           RRM domain, RNA recogntion, aminoacyl-tRNA synthetase,
           ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB:
           3hfv_A*
          Length = 415

 Score = 27.8 bits (61), Expect = 4.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 72  VKGGRGRLVEDVELLDVFR 90
           V+   G LVE V+L+D F 
Sbjct: 349 VRTIGGDLVEKVDLIDKFV 367


>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
           II, ligase; 3.23A {Methanococcus maripaludis S2}
          Length = 685

 Score = 27.2 bits (60), Expect = 6.4
 Identities = 14/71 (19%), Positives = 18/71 (25%), Gaps = 13/71 (18%)

Query: 153 DHEKILGNTVSAIAKDKSGIIKPGCPVVIGH-----QVYDEVREILVSKAEKMG---CPY 204
           D EK    T   I   K     P    V G         + +R+  +     MG      
Sbjct: 33  DFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLR----MGFEEYIN 88

Query: 205 NVYGDDFYAFE 215
            V   D     
Sbjct: 89  PVI-VDERDIY 98


>1f0c_A ICE inhibitor; apoptosis, caspase inhibitor, protease inhibitor,
           serpin, viral protein; 2.26A {Cowpox virus} SCOP:
           e.1.1.1 PDB: 1c8o_A
          Length = 305

 Score = 27.0 bits (59), Expect = 8.4
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 86  LDVFRRVRRVKSAQNLTIFELSIATALVLFS 116
           +D+FR +      +N+ I   SI++ L +  
Sbjct: 1   MDIFREIASSMKGENVFISPPSISSVLTILY 31


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0473    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,680,256
Number of extensions: 172195
Number of successful extensions: 585
Number of sequences better than 10.0: 1
Number of HSP's gapped: 562
Number of HSP's successfully gapped: 25
Length of query: 429
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 334
Effective length of database: 3,390,050
Effective search space: 1132276700
Effective search space used: 1132276700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)