BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] (429 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/429 (100%), Positives = 429/429 (100%) Query: 1 MAADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPH 60 MAADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPH Sbjct: 1 MAADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPH 60 Query: 61 LIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPA 120 LIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPA Sbjct: 61 LIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPA 120 Query: 121 DCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVV 180 DCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVV Sbjct: 121 DCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVV 180 Query: 181 IGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEH 240 IGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEH Sbjct: 181 IGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEH 240 Query: 241 QYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGG 300 QYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGG Sbjct: 241 QYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGG 300 Query: 301 HNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGR 360 HNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGR Sbjct: 301 HNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGR 360 Query: 361 ERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEA 420 ERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEA Sbjct: 361 ERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEA 420 Query: 421 LRENGVRIN 429 LRENGVRIN Sbjct: 421 LRENGVRIN 429 >gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 497 Score = 32.0 bits (71), Expect = 0.021, Method: Compositional matrix adjust. Identities = 14/27 (51%), Positives = 21/27 (77%) Query: 26 VIHIGGTNGKGSVASFSQRLLETSGLS 52 ++ + GT+GK SVASF Q++ + SGLS Sbjct: 117 ILAVTGTSGKSSVASFVQQICQRSGLS 143 >gi|254780197|ref|YP_003064610.1| triosephosphate isomerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 264 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%) Query: 23 LPPVIHIGGTNGK---GSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRL 79 L P++ IG T+ + G Q+ L+ S L +S +I + + +G GR Sbjct: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCS-LPSEFKSSVPVIAYEPIWAIGT--GRVPA 180 Query: 80 VEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATN-- 137 V D+E + F VRR+ L ++P + + + GGS+D N Sbjct: 181 VVDLEKIHSF--VRRI------------------LLDRFPEEGQKMRILYGGSVDVANAE 220 Query: 138 ---IIEKVAVSVITSISLDHEKIL 158 +IE + ++ SL HE L Sbjct: 221 DFSLIENIDGLLVGGASLQHELFL 244 >gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate 3-epimerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 224 Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 7/94 (7%) Query: 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDA-TNIIEKVAVSVIT--SISLDHEKILGN 160 F + +L +S DC + + S+D+ NII +IT S H + Sbjct: 49 FGADVIRSLRSYSDSVFDCHL----MISSIDSHINIIADAGCDIITFHPESSPHIRRSLR 104 Query: 161 TVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILV 194 T+ A+ K I P PV I V DE+ IL+ Sbjct: 105 TIHAMGKKTGVAINPETPVAILEDVIDEIDMILI 138 >gi|254780402|ref|YP_003064815.1| 3-deoxy-D-manno-octulosonic-acid transferase [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 12/83 (14%) Query: 4 DSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIR 63 D++ +MG+ L R+ + IG + AS Q LE + L + + P++ Sbjct: 309 DTIGEMGFYL--------RMTEIAFIG----RSFCASGGQNPLEAAMLGCAILSGPNVEN 356 Query: 64 WNERFRLGVKGGRGRLVEDVELL 86 + + +R V G R+VE+V L Sbjct: 357 FRDIYRRMVSSGAVRIVEEVGTL 379 >gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 468 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHV 55 P I + GTNGK S + +L +G V + Sbjct: 114 PFIAVTGTNGKSSTVALISHVLRKNGYDVQL 144 >gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 474 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 28/189 (14%) Query: 234 LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHS 293 L L+GEH NA +I G L E + L S R + T + N + Sbjct: 280 LPLIGEHNISNACASIAVAYKLG--LSSEDVKKGLASFSGIKR--RFTLVGVWNDV---- 331 Query: 294 EVWIDGGHNP---NAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPI- 349 V+ D GH+P ++ L ++I K +I + + +Y R F + S Sbjct: 332 HVFDDYGHHPIEISSVLAAVRQICPRK---------IIAIHQPHRYSRLSTLFDQFSSCF 382 Query: 350 ----VLSVSLICRGRERQSISITPKVLMQEAKKLGF-QAMACSSMIEALSRVRKINEELP 404 ++ +S + E++ + L++ K G QA S +S++ I E P Sbjct: 383 GDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAE--P 440 Query: 405 PPLILIAGS 413 I+ G+ Sbjct: 441 GDFIIFFGA 449 >gi|254781048|ref|YP_003065461.1| malate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 320 Score = 23.9 bits (50), Expect = 4.8, Method: Compositional matrix adjust. Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 176 GCPVVIGHQVYDEVREILVSKAEK 199 G PVVIGH+ +++ E+ +S EK Sbjct: 272 GVPVVIGHKGVEKIVELNLSFDEK 295 >gi|254780568|ref|YP_003064981.1| hypothetical protein CLIBASIA_02275 [Candidatus Liberibacter asiaticus str. psy62] Length = 70 Score = 23.9 bits (50), Expect = 4.9, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 23/37 (62%) Query: 320 SNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLI 356 S + ++++ + K YG +L ++ + I+LSVSL+ Sbjct: 9 SERFLFVILERMRKKLYGIFLMMWICYAAIILSVSLL 45 >gi|254780370|ref|YP_003064783.1| argininosuccinate lyase [Candidatus Liberibacter asiaticus str. psy62] Length = 473 Score = 23.1 bits (48), Expect = 8.3, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 19/36 (52%) Query: 138 IIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII 173 I+EK+ VS+ L + ILG+ V K GII Sbjct: 25 IMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGII 60 >gi|254780287|ref|YP_003064700.1| iron-sulfur cluster assembly accessory protein [Candidatus Liberibacter asiaticus str. psy62] Length = 109 Score = 23.1 bits (48), Expect = 8.6, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 14/24 (58%) Query: 209 DDFYAFEKNKCLVYQDKISQTNLT 232 +D FEKN ++ DKIS LT Sbjct: 52 EDDIVFEKNGAQIFIDKISLAYLT 75 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.137 0.395 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 268,301 Number of Sequences: 1233 Number of extensions: 10984 Number of successful extensions: 41 Number of sequences better than 100.0: 17 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 20 length of query: 429 length of database: 328,796 effective HSP length: 76 effective length of query: 353 effective length of database: 235,088 effective search space: 82986064 effective search space used: 82986064 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)