BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780821|ref|YP_003065234.1| FolC bifunctional protein
[Candidatus Liberibacter asiaticus str. psy62]
         (429 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 429

 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/429 (100%), Positives = 429/429 (100%)

Query: 1   MAADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPH 60
           MAADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPH
Sbjct: 1   MAADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPH 60

Query: 61  LIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPA 120
           LIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPA
Sbjct: 61  LIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPA 120

Query: 121 DCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVV 180
           DCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVV
Sbjct: 121 DCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVV 180

Query: 181 IGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEH 240
           IGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEH
Sbjct: 181 IGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEH 240

Query: 241 QYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGG 300
           QYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGG
Sbjct: 241 QYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGG 300

Query: 301 HNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGR 360
           HNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGR
Sbjct: 301 HNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGR 360

Query: 361 ERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEA 420
           ERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEA
Sbjct: 361 ERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEA 420

Query: 421 LRENGVRIN 429
           LRENGVRIN
Sbjct: 421 LRENGVRIN 429


>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 497

 Score = 32.0 bits (71), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 21/27 (77%)

Query: 26  VIHIGGTNGKGSVASFSQRLLETSGLS 52
           ++ + GT+GK SVASF Q++ + SGLS
Sbjct: 117 ILAVTGTSGKSSVASFVQQICQRSGLS 143


>gi|254780197|ref|YP_003064610.1| triosephosphate isomerase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 264

 Score = 25.8 bits (55), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 31/144 (21%)

Query: 23  LPPVIHIGGTNGK---GSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRL 79
           L P++ IG T+ +   G      Q+ L+ S L     +S  +I +   + +G   GR   
Sbjct: 124 LYPIVCIGETDEEYRSGRTFEVLQKQLDCS-LPSEFKSSVPVIAYEPIWAIGT--GRVPA 180

Query: 80  VEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATN-- 137
           V D+E +  F  VRR+                  L  ++P +   + +  GGS+D  N  
Sbjct: 181 VVDLEKIHSF--VRRI------------------LLDRFPEEGQKMRILYGGSVDVANAE 220

Query: 138 ---IIEKVAVSVITSISLDHEKIL 158
              +IE +   ++   SL HE  L
Sbjct: 221 DFSLIENIDGLLVGGASLQHELFL 244


>gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate 3-epimerase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 224

 Score = 25.4 bits (54), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDA-TNIIEKVAVSVIT--SISLDHEKILGN 160
           F   +  +L  +S    DC +    +  S+D+  NII      +IT    S  H +    
Sbjct: 49  FGADVIRSLRSYSDSVFDCHL----MISSIDSHINIIADAGCDIITFHPESSPHIRRSLR 104

Query: 161 TVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILV 194
           T+ A+ K     I P  PV I   V DE+  IL+
Sbjct: 105 TIHAMGKKTGVAINPETPVAILEDVIDEIDMILI 138


>gi|254780402|ref|YP_003064815.1| 3-deoxy-D-manno-octulosonic-acid transferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 440

 Score = 25.4 bits (54), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 12/83 (14%)

Query: 4   DSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIR 63
           D++ +MG+ L        R+  +  IG    +   AS  Q  LE + L   + + P++  
Sbjct: 309 DTIGEMGFYL--------RMTEIAFIG----RSFCASGGQNPLEAAMLGCAILSGPNVEN 356

Query: 64  WNERFRLGVKGGRGRLVEDVELL 86
           + + +R  V  G  R+VE+V  L
Sbjct: 357 FRDIYRRMVSSGAVRIVEEVGTL 379


>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 468

 Score = 25.4 bits (54), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 25  PVIHIGGTNGKGSVASFSQRLLETSGLSVHV 55
           P I + GTNGK S  +    +L  +G  V +
Sbjct: 114 PFIAVTGTNGKSSTVALISHVLRKNGYDVQL 144


>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 474

 Score = 25.0 bits (53), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 28/189 (14%)

Query: 234 LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHS 293
           L L+GEH   NA  +I      G  L  E +   L S     R  + T   + N +    
Sbjct: 280 LPLIGEHNISNACASIAVAYKLG--LSSEDVKKGLASFSGIKR--RFTLVGVWNDV---- 331

Query: 294 EVWIDGGHNP---NAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPI- 349
            V+ D GH+P   ++ L   ++I   K         +I + +  +Y R    F + S   
Sbjct: 332 HVFDDYGHHPIEISSVLAAVRQICPRK---------IIAIHQPHRYSRLSTLFDQFSSCF 382

Query: 350 ----VLSVSLICRGRERQSISITPKVLMQEAKKLGF-QAMACSSMIEALSRVRKINEELP 404
               ++ +S +    E++    +   L++  K  G  QA    S    +S++  I E  P
Sbjct: 383 GDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAE--P 440

Query: 405 PPLILIAGS 413
              I+  G+
Sbjct: 441 GDFIIFFGA 449


>gi|254781048|ref|YP_003065461.1| malate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 320

 Score = 23.9 bits (50), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 176 GCPVVIGHQVYDEVREILVSKAEK 199
           G PVVIGH+  +++ E+ +S  EK
Sbjct: 272 GVPVVIGHKGVEKIVELNLSFDEK 295


>gi|254780568|ref|YP_003064981.1| hypothetical protein CLIBASIA_02275 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 70

 Score = 23.9 bits (50), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query: 320 SNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLI 356
           S +  ++++  +  K YG +L  ++  + I+LSVSL+
Sbjct: 9   SERFLFVILERMRKKLYGIFLMMWICYAAIILSVSLL 45


>gi|254780370|ref|YP_003064783.1| argininosuccinate lyase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 473

 Score = 23.1 bits (48), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 138 IIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII 173
           I+EK+ VS+     L  + ILG+ V      K GII
Sbjct: 25  IMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGII 60


>gi|254780287|ref|YP_003064700.1| iron-sulfur cluster assembly accessory protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 109

 Score = 23.1 bits (48), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 209 DDFYAFEKNKCLVYQDKISQTNLT 232
           +D   FEKN   ++ DKIS   LT
Sbjct: 52  EDDIVFEKNGAQIFIDKISLAYLT 75


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.137    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 268,301
Number of Sequences: 1233
Number of extensions: 10984
Number of successful extensions: 41
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 20
length of query: 429
length of database: 328,796
effective HSP length: 76
effective length of query: 353
effective length of database: 235,088
effective search space: 82986064
effective search space used: 82986064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)