HHsearch alignment for GI: 254780822 and conserved domain: PRK09301

>PRK09301 circadian clock protein KaiB; Provisional.
Probab=91.13  E-value=0.55  Score=26.84  Aligned_cols=80  Identities=13%  Similarity=0.220  Sum_probs=58.4

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCEEEEEEECCCCC-HH
Q ss_conf             9499998769970222134666654210-001233322672326577776231568879999799898588748999-89
Q gi|254780822|r   20 NPVVVDFWASWCRPCVKLSPIIDDIADE-LADKVKITKLDIEESSEISTRYQISSIPTLILFKDGKVIDRMMPGASS-QS   97 (107)
Q Consensus        20 ~~vlv~f~a~wC~~C~~~~p~~~~l~~~-~~~~i~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~g~~~-~~   97 (107)
T Consensus         6 ~yvLrLYVaG~tp~S~~Ai~nl~~ice~~L~g~Y~LeVIDv~~~Pe~Ae~~~IlAtPTLvk~-~P~P~RriI-GDLSd~e   83 (103)
T PRK09301          6 TYILKLYVAGNTPNSMRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKI-LPPPVRRII-GDLSDRE   83 (103)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCEEEECHHHHH-CCCCCEEEE-CCCCCHH
T ss_conf             18999997389978999999999999986599636999981269857726886784310020-698620575-0577478


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780822|r   98 DIIE  101 (107)
Q Consensus        98 ~l~~  101 (107)
T Consensus        84 kVL~   87 (103)
T PRK09301         84 KVLI   87 (103)
T ss_pred             HHHH
T ss_conf             9998