HHsearch alignment for GI: 254780822 and conserved domain: PRK13703
>PRK13703 conjugal pilus assembly protein TraF; Provisional.
Probab=98.63 E-value=1.5e-07 Score=64.55 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=68.6
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC---------CHHHHHHHCCCCCCEEEEEE--CCEEE
Q ss_conf 89949999876997022213466665421000123332267232---------65777762315688799997--99898
Q gi|254780822|r 18 CSNPVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIEE---------SSEISTRYQISSIPTLILFK--DGKVI 86 (107)
Q Consensus 18 ~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~---------~~~l~~~~~v~~~Pt~~~~~--~g~~~ 86 (107)
T Consensus 141 a~~~GLffFy~~~c~~c~~~apil~~fa~~yg~~vi~VS~DG~~~p~fp~~r~d~Gqa~~l~V~~~PAL~Lv~p~t~~~~ 220 (247)
T PRK13703 141 AEHYGLMFFYRGQDPIDGQLAQVINGFRKTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR 220 (247)
T ss_pred HHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCCCEE
T ss_conf 87123899986898046998999999999859779998338986877787777867897369841656999988999288
Q ss_pred EEEECCCCCHHHHHHHHH
Q ss_conf 588748999899999998
Q gi|254780822|r 87 DRMMPGASSQSDIIEWIL 104 (107)
Q Consensus 87 ~~~~~g~~~~~~l~~~i~ 104 (107)
T Consensus 221 Pva-~G~iS~deL~~Ri~ 237 (247)
T PRK13703 221 PLS-YGFITQDDLAKRFL 237 (247)
T ss_pred EEE-ECCCCHHHHHHHHH
T ss_conf 773-11277999999999