HHsearch alignment for GI: 254780822 and conserved domain: PRK13728
>PRK13728 conjugal transfer protein TrbB; Provisional.
Probab=97.61 E-value=0.00019 Score=46.74 Aligned_cols=87 Identities=17% Similarity=0.299 Sum_probs=61.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----------CHHHHHH-HC--CCCCCEEEEEE-CCE
Q ss_conf 9949999876997022213466665421000123332267232----------6577776-23--15688799997-998
Q gi|254780822|r 19 SNPVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIEE----------SSEISTR-YQ--ISSIPTLILFK-DGK 84 (107)
Q Consensus 19 ~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~----------~~~l~~~-~~--v~~~Pt~~~~~-~g~ 84 (107)
T Consensus 69 ~dy~lV~F~rS~CPyChqFAP~Lk~~a~~~gi~V~~~SlDG~g~~~FP~~lPaTpei~~tfF~n~~~~tPatFLvNvnT~ 148 (181)
T PRK13728 69 ADWKVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred CCEEEEEEECCCCCHHHHHCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 34189999738892577658899999998597179985369888788867779879999974789878861699733741
Q ss_pred EEEEEECCCCCHHHHHHHHHH
Q ss_conf 985887489998999999984
Q gi|254780822|r 85 VIDRMMPGASSQSDIIEWILS 105 (107)
Q Consensus 85 ~~~~~~~g~~~~~~l~~~i~~ 105 (107)
T Consensus 149 ~ayPv~qG~~~~~~l~~R~d~ 169 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDT 169 (181)
T ss_pred CEECCCCCCCCHHHHHHHHHH
T ss_conf 100111165578999999999