HHsearch alignment for GI: 254780822 and conserved domain: TIGR02738
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB; InterPro: IPR014109 This entry includes thiol-disulphide isomerase (TrbB), a protein that is involved in conjugative transfer of plasmid DNA, specifically in the F-type system. TrbB has been predicted to contain a thioredoxin fold, it also contains a conserved pair of cysteines and has been shown to function as a thiol disulphide isomerase by complementation of Escherichia coli DsbA mutants . TtbB is believed to be involved in pilin assembly . TrbB is closely related to TraF (IPR014110 from INTERPRO) though somewhat longer lacking the cysteine motif and is apparently not functional as a disulphide bond isomerase..
Probab=98.07 E-value=4.3e-06 Score=56.24 Aligned_cols=88 Identities=18% Similarity=0.363 Sum_probs=67.6
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----------CHHHHHH------HCCCCCCEEEEEE
Q ss_conf 89949999876997022213466665421000123332267232----------6577776------2315688799997
Q gi|254780822|r 18 CSNPVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIEE----------SSEISTR------YQISSIPTLILFK 81 (107)
Q Consensus 18 ~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~----------~~~l~~~------~~v~~~Pt~~~~~ 81 (107)
T Consensus 70 ~~~~~~vfF~~S~CPyCh~FAP~LK~f~~~~~~~V~a~SlDG~g~~~FP~~~P~tpE~~~~~F~~~ey~~~~~PalFLvN 149 (176)
T TIGR02738 70 LDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLSVYAFSLDGQGLAEFPDALPATPEVMQTFFPNGEYRPVVTPALFLVN 149 (176)
T ss_pred HHCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCEEEEEC
T ss_conf 44350788862889640022657787887628753788733897877887657876578763388970301023223331
Q ss_pred -CCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf -998985887489998999999984
Q gi|254780822|r 82 -DGKVIDRMMPGASSQSDIIEWILS 105 (107)
Q Consensus 82 -~g~~~~~~~~g~~~~~~l~~~i~~ 105 (107)
T Consensus 150 vnt~~~~~v~~G~~~~~~L~~r~~~ 174 (176)
T TIGR02738 150 VNTRKAYPVLQGAVDEAELANRMDE 174 (176)
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 5378887643387678999999987