HHsearch alignment for GI: 254780822 and conserved domain: TIGR02740
>TIGR02740 TraF-like TraF-like protein; InterPro: IPR014111 This entry contains TraF-like proteins that are related to the F-type conjugation system pilus assembly proteins TraF (IPR014110 from INTERPRO)and TrbB (IPR014109 from INTERPRO) both of which exhibit a thioredoxin fold . The proteins in this entry have the same length and architecture as TraF, but lack the CXXC-motif found in TrbB that is believed to be responsible for the disulphide isomerase activity..
Probab=98.41 E-value=2.1e-06 Score=57.97 Aligned_cols=87 Identities=20% Similarity=0.332 Sum_probs=70.8
Q ss_pred CCCCEEEEEECCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-----------CHHHHHHHCC---CCCCEEEEEEC
Q ss_conf 8994999987699-7022213466665421000123332267232-----------6577776231---56887999979
Q gi|254780822|r 18 CSNPVVVDFWASW-CRPCVKLSPIIDDIADELADKVKITKLDIEE-----------SSEISTRYQI---SSIPTLILFKD 82 (107)
Q Consensus 18 ~~~~vlv~f~a~w-C~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~-----------~~~l~~~~~v---~~~Pt~~~~~~ 82 (107)
T Consensus 193 a~~~GlFFFf~S~~C~~C~~~~pil~~~~~~YG~~V~pvS~DG~PLp~G~FPn~~pD~G~a~~L~iGtd~~VPA~~L~~p 272 (306)
T TIGR02740 193 AKKSGLFFFFKSDDCPYCHAQAPILKAFEDRYGIEVLPVSVDGGPLPGGKFPNARPDAGQAQKLKIGTDRTVPAVFLVDP 272 (306)
T ss_pred HCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 40751689972788662268999999999731970899984588878788888521403675404676654665899985
Q ss_pred -CEEEEEEECCCCCHHHHHHHHH
Q ss_conf -9898588748999899999998
Q gi|254780822|r 83 -GKVIDRMMPGASSQSDIIEWIL 104 (107)
Q Consensus 83 -g~~~~~~~~g~~~~~~l~~~i~ 104 (107)
T Consensus 273 ~p~~~~~igfG~~S~~~L~~Ri~ 295 (306)
T TIGR02740 273 KPNQITPIGFGVMSADELVDRIL 295 (306)
T ss_pred CCCCEEEEEECCCCHHHHHHHHH
T ss_conf 89903687402003888988877